Citrus Sinensis ID: 045449

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820---
Protein Sequence
MLLKSIISQHQQALLALKAHISYDHTNLFARNWTSSTSVCIWIGITCDVNSHRVIGLNISSFNLQGTITPQLGNLSSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQLFGSLSSFIFNMSSMTTIDLSINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEIGNLTKLKEIISTITNSTVCEIPREIGNLPYLARLALATNNLVGVVPVTIFNMSALKEISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSITNSSKLSDLELGENLFSGFIPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGILPKSIGNFSLSLETILMANCSISGNIPQVVGNLSNLLVLELGGNNLTGPIPVTFSQLQTLQAFDLTRNKLAGPITDELCHLARLHSLVLQGNKFSGSIPSCLGNLTSVRVLYLGLNIFTSVLSSTIWNLKDILFIDVSSNFLDGPLSLDIGNLKVVIGLDFSRNNLSGDIPITIGEGEIPRGGPFANLTAKSFMGNELLCGLPDLQVSPCKPNKPNTHKKSRKMLLLVIVLPLSTALIVVVTLTLKWKLIKCWKSRTGPSNDGINSPQAIRRFSYHELLRATDRFSENNLIGIGNGMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGETCTPVRESKYEVHPATTTIMEHPLPRVGEVMDVDRGKARIQGKPIK
Secondary Structure (PSIPRED)
cccccccHHHHHHHHHHHHcccccccccccccccccccccccEEEEcccccccEEEEEEcccccEEEccccccccccccEEEcccccccccccccccccccccEEEcccccccccccHHccccccccEEEccccccccccccccccccccccccccccEEEccccccEEccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccHHcccccccccccccccccEEcccHHHHcccccccEEEEcccEEEEcccccccccccccEEEccccEEEEEccccccccccccEEEccccccccccccccccccccccccccEEEcccccccccccHHHHcccccccEEEEcccEEEEcccccccccccccEEEcccccccccccHHccccccccEEEccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccHHHHccccccEEccccccccccccHHHHccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHcccccccEEEcccccEEEEEEEEccccccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHcccccccEEEEccccccccccccccEEccccccccccccccccccccccccEEEccccccccccccccccccccccEEEcccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHccccHHHHHHHHHHHHccccccccccccccccccccccEEEEEcccccEEEEEEcccccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHHcccccEEEccccccEEEcccccccccHHHcccHccEEEEEccccccccccHHHccHHHHHHHHHHHcccccccccHHHccccccEEEEEHcccccccccHcHcccccccEEEEccccccccccHHHHHHcHcccEEEcccccccccccHHHcccccccEEEEccccccccccHHHcccccccEEEEcccccccccccccccHHHccccccEEEEEEcccccccccHHHccccccEEEEEEccccccccccHHHcccccccEEEEccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHccHHHccEEEcccccccccccHHHcccccEEEEEcccccccccccHHHcccccccEEEccccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHcccHHcEEEcccccEEEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHEEEcccccEEEcccccccEccccccEccccEEEccEcEEcccHcEEEEEcccccEEEEEEEEEEcccccccccccccEEEEEEEEEccccccHHHHccHHHcccccHHHHHHHHcccccc
Coil and Loop (DISEMBL)
MLLKSIISQHQQALLALKAHISydhtnlfarnwtsstSVCIWIGItcdvnshrviglnissfnlqgtitpqlgnlsslqtldlshnklsgnipssifnmhtlklldfsdnqlfgsLSSFIFNMSSMTTIDLSINrlsgelpanickipstlskckQLEELNLgfnnlsgaipkeigNLTKLKEIISTITNstvceipreignlpYLARLALATNNLVGVVPVTIFNMSALKEISLLNnslsgslpsridlslpnvetlnlginsfsgtipssitnssklsdlelgenlfsgfipntignlrnlefgniadnyltsstpelsflssltnckKLKVLIVTgnpldgilpksignfSLSLETILMANcsisgnipqVVGNLSNLLVLElggnnltgpipvtfSQLQTLQAFdltrnklagpitdELCHLARLHSLVLqgnkfsgsipsclgnlTSVRVLYLGLNIFTSVLSSTIWNLKDILFIdvssnfldgplsldignLKVVIGLDfsrnnlsgdipitigegeiprggpfanltaksfmgnellcglpdlqvspckpnkpnthkksRKMLLLVIVLPLSTALIVVVTLTLKWKLIKcwksrtgpsndginspqaiRRFSYHELLRAtdrfsennligignGMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVKIISSSLeylhfghsipiihcdlkpsnvlldeDMVAHISDFGIakllsgedqLSKQTQTLATIgymapeygtkgrvstrgdvcsfgiisggketrsmtvgetctpvreskyevhpatttimehplprvgevmdvdrgkariqgkpik
Flexible Loop (DISEMBL)
MLLKSIISQHQQALLALKAHISYDHTNLFARNWTSSTSVCIWIGITCDVNSHRVIGLNISSFNLQGTITPQLGNLSSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQLFGSLSSFIFNMSSMTTIDLSINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEIGNLTKLKEIISTItnstvceiprEIGNLPYLARLALATNNLVGVVPVTIFNMSALKEISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSITNSSKLSDLELGENLFSGFIPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTgnpldgilPKSIGNFSLSLETILMANCSISGNIPQVVGNLSNLLVLELGGNNLTGPIPVTFSQLQTLQAFDLTRNKLAGPITDELCHLARLHSLVLQGNKFSGSIPSCLGNLTSVRVLYLGLNIFTSVLSSTIWNLKDILFIDVSSNFLDGPLSLDIGNLKVVIGLDFSRNNLSGDipitigegeiprGGPFANLTAKSFMGNELLCGLPDLQVSPCKPNKPNTHKKSRKMLLLVIVLPLSTALIVVVTLTLKWKLIKCWksrtgpsndginspqAIRRFSYHELLRATDRFSENNLIGIGNGMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMApeygtkgrvstrgdVCSFGiisggketrsmtvgetctpvreskyevhpatttimehplprvgevmdvdrgkariqgkpik
Low Complexity Region (SEG)
MLLKSIISQHQQALLALKAHISYDHTNLFARNWTSSTSVCIWIGITCDVNSHRVIGLNISSFNLQGTITPQLGNLSSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQLFGSLSSFIFNMSSMTTIDLSINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEIGNLTKLKEIISTITNSTVCEIPREIGNLPYLARLALATNNLVGVVPVTIFNMSALKEIsllnnslsgslPSRIDLSLPNVETLNLGINSFSGTIPSSITNSSKLSDLELGENLFSGFIPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGILPKSIGNFSLSLETILMANCSISGNIPQvvgnlsnllvlelggnnlTGPIPVTFSQLQTLQAFDLTRNKLAGPITDELCHLARLHSLVLQGNKFSGSIPSCLGNLTSVRVLYLGLNIFTSVLSSTIWNLKDILFIDVSSNFLDGPLSLDIGNLKVVIGLDFSRNNLSGDIPITIGEGEIPRGGPFANLTAKSFMGNELLCGLPDLQVSPCKPNKPNTHKKSRKMLLLVIVLPLSTALIVVVTLTLKWKLIKCWKSRTGPSNDGINSPQAIRRFSYHELLRATDRFSENNLIGIGNGMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGETCTPVRESKYEVHPATTTIMEHPLPRVGEVMDVDRGKARIQGKPIK
Disordered region (IsUnstruct)
******ISQHQQALLALKAHISYDHTNLFARNWTSSTSVCIWIGITCDVNSHRVIGLNISSFNLQGTITPQLGNLSSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQLFGSLSSFIFNMSSMTTIDLSINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEIGNLTKLKEIISTITNSTVCEIPREIGNLPYLARLALATNNLVGVVPVTIFNMSALKEISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTI**********SDLELGENLFSGFIPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGILPKSIGNFSLSLETILMANCSISGNIPQVVGNLSNLLVLELGGNNLTGPIPVTFSQLQTLQAFDLTRNKLAGPITDELCHLARLHSLVLQGNKFSGSIPSCLGNLTSVRVLYLGLNIFTSVLSSTIWNLKDILFIDVSSNFLDGPLSLDIGNLKVVIGLDFSRNNLSGDIPITIGEGEIPRGGPFANLTAKSFMGNELLCGLPDLQV***************KMLLLVIVLPLSTALIVVVTLTLKWKLIKCWKSRT**********QAIRRFSYHELLRATDRFSENNLIGIGNGMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGK*****TVGETCT*******************************************
Disordered Region (DISOPRED)
MLLKSIISQHQQALLALKAHIS**********WTSSTSVCIWIGITCDVNSHRVIGLNISSFNLQGTITPQLGNLSSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQLFGSLSSFIFNMSSMTTIDLSINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEIGNLTKLKEIISTITNSTVCEIPREIGNLPYLARLALATNNLVGVVPVTIFNMSALKEISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSITNSSKLSDLELGENLFSGFIPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGILPKSIGNFSLSLETILMANCSISGNIPQVVGNLSNLLVLELGGNNLTGPIPVTFSQLQTLQAFDLTRNKLAGPITDELCHLARLHSLVLQGNKFSGSIPSCLGNLTSVRVLYLGLNIFTSVLSSTIWNLKDILFIDVSSNFLDGPLSLDIGNLKVVIGLDFSRNNLSGDIPITIGEGEIPRGGPFANLTAKSFMGNELLCGLPDL*********************LVIVLPLSTALIVVVTLTLKWK********************AIRRFSYHELLRATDRFSENNLIGIGNGMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSG********QTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGETCTPVRESKYEVHPATTTIMEHPLPRVGEVMD**************
Disordered Region (DISEMBL)
MLLKSIISQHQQALLALKAHISYDHTNLFARNWTSSTSVCIWIGITCDVNSHRVIGLNISSFNLQGTITPQLGNLSSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQLFGSLSSFIFNMSSMTTIDLSINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEIGNLTKLKEIISTITNSTVCEIPREIGNLPYLARLALATNNLVGVVPVTIFNMSALKEISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSITNSSKLSDLELGENLFSGFIPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGILPKSIGNFSLSLETILMANCSISGNIPQVVGNLSNLLVLELGGNNLTGPIPVTFSQLQTLQAFDLTRNKLAGPITDELCHLARLHSLVLQGNKFSGSIPSCLGNLTSVRVLYLGLNIFTSVLSSTIWNLKDILFIDVSSNFLDGPLSLDIGNLKVVIGLDFSRNNLSGDIPITIGEGEIPRGGPFANLTAKSFMGNELLCGLPDLQVSPCKPNKPNTHKKSRKMLLLVIVLPLSTALIVVVTLTLKWKLIKCWKSRTGPSNDGINSPQAIRRFSYHELLRATDRFSENNLIGIGNGMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGETCTPVRESKYEVHPATTTIMEHPLPRVGEVMDVDRGKA********
Disordered Region (DISPRO)
MLLKSIISQHQQALLALKAHISYDHTNLFARNWTSSTSVCIWIGITCDVNSHRVIGLNISSFNLQGTITPQLGNLSSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQLFGSLSSFIFNMSSMTTIDLSINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEIGNLTKLKEIISTITNSTVCEIPREIGNLPYLARLALATNNLVGVVPVTIFNMSALKEISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSITNSSKLSDLELGENLFSGFIPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGILPKSIGNFSLSLETILMANCSISGNIPQVVGNLSNLLVLELGGNNLTGPIPVTFSQLQTLQAFDLTRNKLAGPITDELCHLARLHSLVLQGNKFSGSIPSCLGNLTSVRVLYLGLNIFTSVLSSTIWNLKDILFIDVSSNFLDGPLSLDIGNLKVVIGLDFSRNNLSGDIPITIGEGEIPRGGPFANLTAKSFMGNELLCGLPDLQVSPC*******HKKSRKMLLLVIVLPLSTALIVVVTLTLKWKLIKCWKSR******GINSPQAIRRFSYHELLRATDRFSENNLIGIGNGMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGETCTPVRESKYEVHPATTTIMEHPLPRVGEVMDVDRGKARIQGKPIK
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MLLKSIISQHQQALLALKAHISYDHTNLFARNWTSSTSVCIWIGITCDVNSHRVIGLNISSFNLQGTITPQLGNLSSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQLFGSLSSFIFNMSSMTTIDLSINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEIGNLTKLKEIISTITNSTVCEIPREIGNLPYLARLALATNNLVGVVPVTIFNMSALKEISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSITNSSKLSDLELGENLFSGFIPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGILPKSIGNFSLSLETILMANCSISGNIPQVVGNLSNLLVLELGGNNLTGPIPVTFSQLQTLQAFDLTRNKLAGPITDELCHLARLHSLVLQGNKFSGSIPSCLGNLTSVRVLYLGLNIFTSVLSSTIWNLKDILFIDVSSNFLDGPLSLDIGNLKVVIGLDFSRNNLSGDIPITIGEGEIPRGGPFANLTAKSFMGNELLCGLPDLQVSPCKPNKPNTHKKSRKMLLLVIVLPLSTALIVVVTLTLKWKLIKCWKSRTGPSNDGINSPQAIRRFSYHELLRATDRFSENNLIGIGNGMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGETCTPVRESKYEVHPATTTIMEHPLPRVGEVMDVDRGKARIQGKPIK
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	823	2.2.26 [Sep-21-2011]
C0LGT6	1031	LRR receptor-like serine/	yes	no	0.934	0.745	0.330	1e-111
C0LGP4	1010	Probable LRR receptor-lik	no	no	0.901	0.734	0.327	1e-103
Q9SD62	1025	Putative receptor-like pr	no	no	0.904	0.725	0.327	7e-91
Q42371	976	LRR receptor-like serine/	no	no	0.893	0.753	0.310	7e-90
Q9M2Z1	1002	Leucine-rich repeat recep	no	no	0.882	0.724	0.299	3e-84
C0LGW6	966	LRR receptor-like serine/	no	no	0.884	0.753	0.301	5e-84
O49545	1003	Leucine-rich repeat recep	no	no	0.889	0.729	0.307	8e-84
Q9ZUI0	980	Putative leucine-rich rep	no	no	0.919	0.772	0.315	1e-81
Q6XAT2	967	LRR receptor-like serine/	no	no	0.897	0.764	0.299	1e-81
Q8VZG8	1045	Probable LRR receptor-lik	no	no	0.845	0.666	0.298	2e-81

>sp|C0LGT6|EFR_ARATH LRR receptor-like serine/threonine-protein kinase EFR OS=Arabidopsis thaliana GN=EFR PE=1 SV=1

 Score =  402 bits (1032), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 309/934 (33%), Positives = 442/934 (47%), Gaps = 165/934 (17%)

Query: 12  QALLALKAHISYDHTNLFARNWTSSTSVCIWIGITCDVNSHRVIGLNISSFNLQGTITPQ 71
           QALL  K+ +S ++      +W  S+  C WIG+TC     RVI LN+  F L G I+P 
Sbjct: 33  QALLEFKSQVSENNKREVLASWNHSSPFCNWIGVTCGRRRERVISLNLGGFKLTGVISPS 92

Query: 72  LGNLSSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQLFGSLSSFIFNMSSMTTIDL 131
           +GNLS L+ L+L+ N     IP  +  +  L+ L+ S N L G + S + N S ++T+DL
Sbjct: 93  IGNLSFLRLLNLADNSFGSTIPQKVGRLFRLQYLNMSYNLLEGRIPSSLSNCSRLSTVDL 152

Query: 132 SINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEIGNLTKLKEIISTITNS 191
           S N L          +PS L    +L  L+L  NNL+G  P  +GNLT L+++     N 
Sbjct: 153 SSNHLGH-------GVPSELGSLSKLAILDLSKNNLTGNFPASLGNLTSLQKL-DFAYNQ 204

Query: 192 TVCEIPREIGNLPYLARLALATNNLVGVVPVTIFNMSALKEISLLNNSLSGSLPSRIDLS 251
              EIP E+  L  +    +A N+  G  P  ++N+S+L+ +SL +NS SG+L +     
Sbjct: 205 MRGEIPDEVARLTQMVFFQIALNSFSGGFPPALYNISSLESLSLADNSFSGNLRADFGYL 264

Query: 252 LPNVETLNLGINSFSGTIPSSITNSSKLSDLELGENLFSGFIPNTIGNLRNLEF-GNIAD 310
           LPN+  L LG N F+G IP ++ N S L   ++  N  SG IP + G LRNL + G   +
Sbjct: 265 LPNLRRLLLGTNQFTGAIPKTLANISSLERFDISSNYLSGSIPLSFGKLRNLWWLGIRNN 324

Query: 311 NYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGILPKSIGNFSLSLETILMANCSISGN 370
           +   +S+  L F+ ++ NC +L+ L V  N L G LP SI N S +L ++ +    ISG 
Sbjct: 325 SLGNNSSSGLEFIGAVANCTQLEYLDVGYNRLGGELPASIANLSTTLTSLFLGQNLISGT 384

Query: 371 IPQVVGNLSNLLVLELGGNNLTGPIPVTFSQLQTLQAFDLTRNKLAGPITDELCHLARLH 430
           IP  +GNL +L  L L  N L+G +PV+F +L  LQ  DL  N ++G I     ++ RL 
Sbjct: 385 IPHDIGNLVSLQELSLETNMLSGELPVSFGKLLNLQVVDLYSNAISGEIPSYFGNMTRLQ 444

Query: 431 SLVLQGNKFSGSIPSCLGNLTSVRVLYLGLNIFTSVLSSTIWNLKDILFIDVSSNFLDGP 490
            L L  N F G IP  LG    +  L++  N     +   I  +  + +ID+S+NFL G 
Sbjct: 445 KLHLNSNSFHGRIPQSLGRCRYLLDLWMDTNRLNGTIPQEILQIPSLAYIDLSNNFLTGH 504

Query: 491 LSLDIGNLKVVIGLDFSRNNLSGDIPITIG------------------------------ 520
              ++G L++++GL  S N LSG +P  IG                              
Sbjct: 505 FPEEVGKLELLVGLGASYNKLSGKMPQAIGGCLSMEFLFMQGNSFDGAIPDISRLVSLKN 564

Query: 521 --------EGEIPR------------------------GGPFANLTAKSFMGNELLC-GL 547
                    G IPR                         G F N TA S  GN  +C G+
Sbjct: 565 VDFSNNNLSGRIPRYLASLPSLRNLNLSMNKFEGRVPTTGVFRNATAVSVFGNTNICGGV 624

Query: 548 PDLQVSPCKPNKPNTHKKS---RKMLLLVIVLPLSTALIVVVTLTLKWKLIKCWKSRTGP 604
            ++Q+ PC        +K    RK ++  I + +++ L++++  +L W + +  K+    
Sbjct: 625 REMQLKPCIVQASPRKRKPLSVRKKVVSGICIGIASLLLIIIVASLCWFMKRKKKNNASD 684

Query: 605 SN--DGINSPQAIRRFSYHELLRATDRFSENNLIGIGN---------GME---VAVKVFH 650
            N  D         + SY EL  AT RFS  NLIG GN         G E   VAVKV +
Sbjct: 685 GNPSDSTTLGMFHEKVSYEELHSATSRFSSTNLIGSGNFGNVFKGLLGPENKLVAVKVLN 744

Query: 651 QQYERALKSFEDECEVRKRIRHRNLVKIIS--SSL------------EYLHFG------- 689
                A KSF  ECE  K IRHRNLVK+I+  SSL            E++  G       
Sbjct: 745 LLKHGATKSFMAECETFKGIRHRNLVKLITVCSSLDSEGNDFRALVYEFMPKGSLDMWLQ 804

Query: 690 ---------HSIPI--------------------IHC-------DLKPSNVLLDEDMVAH 713
                    HS  +                    +HC       D+KPSN+LLD+D+ AH
Sbjct: 805 LEDLERVNDHSRSLTPAEKLNIAIDVASALEYLHVHCHDPVAHCDIKPSNILLDDDLTAH 864

Query: 714 ISDFGIAKLLSGEDQLSKQTQ-----TLATIGYMAPEYGTKGRVSTRGDVCSFGII---- 764
           +SDFG+A+LL   D+ S   Q        TIGY APEYG  G+ S +GDV SFGI+    
Sbjct: 865 VSDFGLAQLLYKYDRESFLNQFSSAGVRGTIGYAAPEYGMGGQPSIQGDVYSFGILLLEM 924

Query: 765 -SGGKETRSMTVGETCTPVRESKYEVHPATTTIM 797
            SG K T     G+         Y +H  T +I+
Sbjct: 925 FSGKKPTDESFAGD---------YNLHSYTKSIL 949

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of elongation factor Tu (EF-Tu), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Reduces transformation by Rhizobium radiobacter probably by inducing plant defense during the interaction. Binding to the effector AvrPto1 from P.syringae blocks the downstream plant immune response.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|C0LGP4|Y3475_ARATH Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=1 SV=1

 Score =  377 bits (968), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 294/897 (32%), Positives = 434/897 (48%), Gaps = 155/897 (17%)

Query: 11  QQALLALKAHISYDHTNLFARNWTSSTSVCIWIGITCDVNSHRVIGLNISSFNLQGTITP 70
           +QALL  K+ +S D   + + +W  S  +C W G+TC   + RV  L +    L G I+P
Sbjct: 26  RQALLQFKSQVSEDKRVVLS-SWNHSFPLCNWKGVTCGRKNKRVTHLELGRLQLGGVISP 84

Query: 71  QLGNLSSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQLFGSLSSFIFNMSSMTTID 130
            +GNLS L +LDL  N   G IP  +  +  L+ LD   N L G +   ++N S +  + 
Sbjct: 85  SIGNLSFLVSLDLYENFFGGTIPQEVGQLSRLEYLDMGINYLRGPIPLGLYNCSRLLNLR 144

Query: 131 LSINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEIGNLTKLKEIISTITN 190
           L  NRL G        +PS L     L +LNL  NN+ G +P  +GNLT L+++  +  N
Sbjct: 145 LDSNRLGG-------SVPSELGSLTNLVQLNLYGNNMRGKLPTSLGNLTLLEQLALS-HN 196

Query: 191 STVCEIPREIGNLPYLARLALATNNLVGVVPVTIFNMSALKEISLLNNSLSGSLPSRIDL 250
           +   EIP ++  L  +  L L  NN  GV P  ++N+S+LK + +  N  SG L   + +
Sbjct: 197 NLEGEIPSDVAQLTQIWSLQLVANNFSGVFPPALYNLSSLKLLGIGYNHFSGRLRPDLGI 256

Query: 251 SLPNVETLNLGINSFSGTIPSSITNSSKLSDLELGENLFSGFIPNTIGNLRNLEFGNIAD 310
            LPN+ + N+G N F+G+IP++++N S L  L + EN  +G IP T GN+ NL+   +  
Sbjct: 257 LLPNLLSFNMGGNYFTGSIPTTLSNISTLERLGMNENNLTGSIP-TFGNVPNLKLLFLHT 315

Query: 311 NYLTS-STPELSFLSSLTNCKKLKVLIVTGNPLDGILPKSIGNFSLSLETILMANCSISG 369
           N L S S+ +L FL+SLTNC +L+ L +  N L G LP SI N S  L T+ +    ISG
Sbjct: 316 NSLGSDSSRDLEFLTSLTNCTQLETLGIGRNRLGGDLPISIANLSAKLVTLDLGGTLISG 375

Query: 370 NIPQVVGNLSNLLVLELGGNNLTGPIPVTFSQLQTLQAFDLTRNKLAGPITDELCHLARL 429
           +IP  +GNL NL  L L  N L+GP+P +  +L  L+   L  N+L+G I   + ++  L
Sbjct: 376 SIPYDIGNLINLQKLILDQNMLSGPLPTSLGKLLNLRYLSLFSNRLSGGIPAFIGNMTML 435

Query: 430 HSLVLQGNKFSGSIPSCLGNLTSVRVLYLGLNIFTSVLSSTIWNLKDILFIDVSSNFLDG 489
            +L L  N F G +P+ LGN + +  L++G N     +   I  ++ +L +D+S N L G
Sbjct: 436 ETLDLSNNGFEGIVPTSLGNCSHLLELWIGDNKLNGTIPLEIMKIQQLLRLDMSGNSLIG 495

Query: 490 PLSLDIGNLKVVIGLDFSRNNLSGDIPITIG----------EGEIPRGG----------- 528
            L  DIG L+ +  L    N LSG +P T+G          EG +  G            
Sbjct: 496 SLPQDIGALQNLGTLSLGDNKLSGKLPQTLGNCLTMESLFLEGNLFYGDIPDLKGLVGVK 555

Query: 529 ----------------------------PFANLTAK-------------SFMGNELLC-G 546
                                        F NL  K             S +GN  LC G
Sbjct: 556 EVDLSNNDLSGSIPEYFASFSKLEYLNLSFNNLEGKVPVKGIFENATTVSIVGNNDLCGG 615

Query: 547 LPDLQVSPCKPNKPNTHKK-SRKMLLLVIVLPLSTALIVVV---TLTLKWKLIKCWKSRT 602
           +   Q+ PC    P+  KK S ++  +VI + +   L++++   ++TL W  ++  K   
Sbjct: 616 IMGFQLKPCLSQAPSVVKKHSSRLKKVVIGVSVGITLLLLLFMASVTLIW--LRKRKKNK 673

Query: 603 GPSNDGINSPQAI-RRFSYHELLRATDRFSENNLIGIGN------------GMEVAVKVF 649
             +N   ++ + +  + SY +L  AT+ FS +N++G G+               VAVKV 
Sbjct: 674 ETNNPTPSTLEVLHEKISYGDLRNATNGFSSSNMVGSGSFGTVYKALLLTEKKVVAVKVL 733

Query: 650 HQQYERALKSFEDECEVRKRIRHRNLVKIISSS--------------------------- 682
           + Q   A+KSF  ECE  K IRHRNLVK++++                            
Sbjct: 734 NMQRRGAMKSFMAECESLKDIRHRNLVKLLTACSSIDFQGNEFRALIYEFMPNGSLDMWL 793

Query: 683 -----------------LEYLHFGHSIPII------HC-------DLKPSNVLLDEDMVA 712
                            LE L+    +  +      HC       DLKPSNVLLD+D+ A
Sbjct: 794 HPEEVEEIHRPSRTLTLLERLNIAIDVASVLDYLHVHCHEPIAHCDLKPSNVLLDDDLTA 853

Query: 713 HISDFGIAKLLSGEDQLSKQTQ-----TLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
           H+SDFG+A+LL   D+ S   Q        TIGY APEYG  G+ S  GDV SFGI+
Sbjct: 854 HVSDFGLARLLLKFDEESFFNQLSSAGVRGTIGYAAPEYGVGGQPSINGDVYSFGIL 910

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SD62|Y3471_ARATH Putative receptor-like protein kinase At3g47110 OS=Arabidopsis thaliana GN=At3g47110 PE=3 SV=1

 Score =  335 bits (860), Expect = 7e-91,   Method: Compositional matrix adjust.
 Identities = 294/897 (32%), Positives = 428/897 (47%), Gaps = 153/897 (17%)

Query: 11  QQALLALKAHISYDHTNLFARNWTSSTSVCIWIGITCDVNSHRVIGLNISSFNLQGTITP 70
           +QALL  K+ +S + + +   +W  S  +C W G+ C +   RV G+++    L G ++P
Sbjct: 41  KQALLEFKSQVS-ETSRVVLGSWNDSLPLCSWTGVKCGLKHRRVTGVDLGGLKLTGVVSP 99

Query: 71  QLGNLSSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQLFGSLSSFIFNMSSMTTID 130
            +GNLS L++L+L+ N   G IPS + N+  L+ L+ S+N   G +   + N SS++T+D
Sbjct: 100 FVGNLSFLRSLNLADNFFHGAIPSEVGNLFRLQYLNMSNNLFGGVIPVVLSNCSSLSTLD 159

Query: 131 LSINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEIGNLTKLKEIISTITN 190
           LS N L          +P       +L  L+LG NNL+G  P  +GNLT L +++  I N
Sbjct: 160 LSSNHLEQ-------GVPLEFGSLSKLVLLSLGRNNLTGKFPASLGNLTSL-QMLDFIYN 211

Query: 191 STVCEIPREIGNLPYLARLALATNNLVGVVPVTIFNMSALKEISLLNNSLSGSLPSRIDL 250
               EIP +I  L  +    +A N   GV P  I+N+S+L  +S+  NS SG+L      
Sbjct: 212 QIEGEIPGDIARLKQMIFFRIALNKFNGVFPPPIYNLSSLIFLSITGNSFSGTLRPDFGS 271

Query: 251 SLPNVETLNLGINSFSGTIPSSITNSSKLSDLELGENLFSGFIPNTIGNLRNLEFGNIAD 310
            LPN++ L +GINSF+GTIP +++N S L  L++  N  +G IP + G L+NL    + +
Sbjct: 272 LLPNLQILYMGINSFTGTIPETLSNISSLRQLDIPSNHLTGKIPLSFGRLQNLLLLGLNN 331

Query: 311 NYLTS-STPELSFLSSLTNCKKLKVLIVTGNPLDGILPKSIGNFSLSLETILMANCSISG 369
           N L + S+ +L FL +LTNC +L+ L V  N L G LP  I N S  L  + +    ISG
Sbjct: 332 NSLGNYSSGDLDFLGALTNCSQLQYLNVGFNKLGGQLPVFIANLSTQLTELSLGGNLISG 391

Query: 370 NIPQVVGNLSNLLVLELGGNNLTGPIPVTFSQLQTLQAFDLTRNKLAGPITDELCHLARL 429
           +IP  +GNL +L  L+LG N LTG +P +  +L  L+   L  N L+G I   L +++ L
Sbjct: 392 SIPHGIGNLVSLQTLDLGENLLTGKLPPSLGELSELRKVLLYSNGLSGEIPSSLGNISGL 451

Query: 430 HSLVLQGNKFSGSIPSCLGNLTSVRVLYLGLNIFTSVLSSTIWNLKDILFIDVSSNFLDG 489
             L L  N F GSIPS LG+ + +  L LG N     +   +  L  ++ ++VS N L G
Sbjct: 452 TYLYLLNNSFEGSIPSSLGSCSYLLDLNLGTNKLNGSIPHELMELPSLVVLNVSFNLLVG 511

Query: 490 PLSLDIGNLKVVIGLD-------------------------------------------- 505
           PL  DIG LK ++ LD                                            
Sbjct: 512 PLRQDIGKLKFLLALDVSYNKLSGQIPQTLANCLSLEFLLLQGNSFVGPIPDIRGLTGLR 571

Query: 506 ---FSRNNLSGDIPITIG---------------EGEIPRGGPFANLTAKSFMGNELLCG- 546
               S+NNLSG IP  +                +G +P  G F N +A S  GN  LCG 
Sbjct: 572 FLDLSKNNLSGTIPEYMANFSKLQNLNLSLNNFDGAVPTEGVFRNTSAMSVFGNINLCGG 631

Query: 547 LPDLQVSPCKPNKPNTHKKSRKMLLLVI-VLPLSTALIVVVTLTLKWKLIKCWKSRTGPS 605
           +P LQ+ PC    P  H   RK++ + +  +  +  L+ +  + L W  ++  KS    +
Sbjct: 632 IPSLQLQPCSVELPRRHSSVRKIITICVSAVMAALLLLCLCVVYLCWYKLRV-KSVRANN 690

Query: 606 NDGINSPQAIRRF----SYHELLRATDRFSENNLIGIGN------------GMEVAVKVF 649
           N+   S   ++ F    SY EL + T  FS +NLIG GN               VA+KV 
Sbjct: 691 NENDRSFSPVKSFYEKISYDELYKTTGGFSSSNLIGSGNFGAVFKGFLGSKNKAVAIKVL 750

Query: 650 HQQYERALKSFEDECEVRKRIRHRNLVKII---SSS-----------LEYLHFGHSIPII 695
           +     A KSF  ECE    IRHRNLVK++   SSS            E++  G+    +
Sbjct: 751 NLCKRGAAKSFIAECEALGGIRHRNLVKLVTICSSSDFEGNDFRALVYEFMPNGNLDMWL 810

Query: 696 HCDL-----KPS---------NVLLD------------EDMVAH---------------- 713
           H D       PS         N+ +D             + +AH                
Sbjct: 811 HPDEIEETGNPSRTLGLFARLNIAIDVASALVYLHTYCHNPIAHCDIKPSNILLDKDLTA 870

Query: 714 -ISDFGIAKLLSGEDQLSKQTQ-----TLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
            +SDFG+A+LL   D+ +   Q        TIGY APEYG  G  S  GDV SFGI+
Sbjct: 871 HVSDFGLAQLLLKFDRDTFHIQFSSAGVRGTIGYAAPEYGMGGHPSIMGDVYSFGIV 927

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q42371|ERECT_ARATH LRR receptor-like serine/threonine-protein kinase ERECTA OS=Arabidopsis thaliana GN=ERECTA PE=1 SV=1

 Score =  332 bits (851), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 264/849 (31%), Positives = 408/849 (48%), Gaps = 114/849 (13%)

Query: 2   LLKSIISQHQQALLALKAHISYDHTNLFARNWTSSTS--VCIWIGITCDVNSHRVIGLNI 59
           L+ ++ S+    LL +K   S+   N    +WT+S S   C+W G++C+  +  V+ LN+
Sbjct: 18  LVATVTSEEGATLLEIKK--SFKDVNNVLYDWTTSPSSDYCVWRGVSCENVTFNVVALNL 75

Query: 60  SSFNLQGTITPQLGNLSSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQLFGSLSSF 119
           S  NL G I+P +G+L SL ++DL  N+LSG IP  I +  +L+ LD S N+L G +   
Sbjct: 76  SDLNLDGEISPAIGDLKSLLSIDLRGNRLSGQIPDEIGDCSSLQNLDLSFNELSGDIPFS 135

Query: 120 IFNMSSMTTIDLSINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEIGNLT 179
           I  +  +  + L  N+L G        IPSTLS+   L+ L+L  N LSG IP+ I    
Sbjct: 136 ISKLKQLEQLILKNNQLIG-------PIPSTLSQIPNLKILDLAQNKLSGEIPRLI-YWN 187

Query: 180 KLKEIISTITNSTVCEIPREIGNLPYLARLALATNNLVGVVPVTIFNMSALKEISLLNNS 239
           ++ + +    N+ V  I  ++  L  L    +  N+L G +P TI N +A + + L  N 
Sbjct: 188 EVLQYLGLRGNNLVGNISPDLCQLTGLWYFDVRNNSLTGSIPETIGNCTAFQVLDLSYNQ 247

Query: 240 LSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSITNSSKLSDLELGENLFSGFIPNTIGN 299
           L+G +P   D+    V TL+L  N  SG IPS I     L+ L+L  NL SG IP  +GN
Sbjct: 248 LTGEIP--FDIGFLQVATLSLQGNQLSGKIPSVIGLMQALAVLDLSGNLLSGSIPPILGN 305

Query: 300 LRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGILPKSIGNFSLSLET 359
           L   E   +  N LT S P       L N  KL  L +  N L G +P  +G  +  L  
Sbjct: 306 LTFTEKLYLHSNKLTGSIPP-----ELGNMSKLHYLELNDNHLTGHIPPELGKLT-DLFD 359

Query: 360 ILMANCSISGNIPQVVGNLSNLLVLELGGNNLTGPIPVTFSQLQTLQAFDLTRNKLAGPI 419
           + +AN  + G IP  + + +NL  L + GN  +G IP  F +L+++   +L+ N + GPI
Sbjct: 360 LNVANNDLEGPIPDHLSSCTNLNSLNVHGNKFSGTIPRAFQKLESMTYLNLSSNNIKGPI 419

Query: 420 TDELCHLARLHSLVLQGNKFSGSIPSCLGNLTSVRVLYLGLNIFTSVLSSTIWNLKDILF 479
             EL  +  L +L L  NK +G IPS LG+L  +  + L  N  T V+     NL+ I+ 
Sbjct: 420 PVELSRIGNLDTLDLSNNKINGIIPSSLGDLEHLLKMNLSRNHITGVVPGDFGNLRSIME 479

Query: 480 IDVSSNFLDGPLSLDIGNLKVVIGLDFSRNNLSGDI-------PITIGE-------GEIP 525
           ID+S+N + GP+  ++  L+ +I L    NNL+G++        +T+         G+IP
Sbjct: 480 IDLSNNDISGPIPEELNQLQNIILLRLENNNLTGNVGSLANCLSLTVLNVSHNNLVGDIP 539

Query: 526 RGGPFANLTAKSFMGNELLCGLPDLQVSPCKPNKPNTHKKSRKMLLLVIVLPLSTALIVV 585
           +   F+  +  SF+GN  LCG      SPC     ++ +  R  +    +L ++   +V+
Sbjct: 540 KNNNFSRFSPDSFIGNPGLCG--SWLNSPCH----DSRRTVRVSISRAAILGIAIGGLVI 593

Query: 586 VTLTLKWKLIKCWKSRTGPSNDG-------INSPQAI------RRFSYHELLRATDRFSE 632
           + + L   +  C      P  DG        ++P+ +          Y +++R T+  SE
Sbjct: 594 LLMVL---IAACRPHNPPPFLDGSLDKPVTYSTPKLVILHMNMALHVYEDIMRMTENLSE 650

Query: 633 NNLIGIG-----------NGMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVKIISS 681
             +IG G           N   VA+K  +    +++K FE E E+   I+HRNLV + + 
Sbjct: 651 KYIIGHGASSTVYKCVLKNCKPVAIKRLYSHNPQSMKQFETELEMLSSIKHRNLVSLQAY 710

Query: 682 SLE----------------------------------------------YLHFGHSIPII 695
           SL                                               YLH   S  II
Sbjct: 711 SLSHLGSLLFYDYLENGSLWDLLHGPTKKKTLDWDTRLKIAYGAAQGLAYLHHDCSPRII 770

Query: 696 HCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTR 755
           H D+K SN+LLD+D+ A ++DFGIAK L         T  + TIGY+ PEY    R++ +
Sbjct: 771 HRDVKSSNILLDKDLEARLTDFGIAKSLCVSKS-HTSTYVMGTIGYIDPEYARTSRLTEK 829

Query: 756 GDVCSFGII 764
            DV S+GI+
Sbjct: 830 SDVYSYGIV 838

Receptor kinase that, together with ERL1 and ERL2, regulates aerial architecture, including inflorescence (e.g. shoot apical meristem-originating organ shape, elongation of the internode and pedicels, and adaxial-abaxial polarity), and stomatal patterning (e.g. density and clustering), probably by tuning cell division and expansion. Modulates plant transpiration efficiency by controlling stomatal density, leaf photosynthetic capacity, epidermal cell expansion, mesophyll cell proliferation and cell-cell contact. Probable major trait regulating canalization (maintenance of phenotype despite varying environment) in many aspect of the plant physiology (e.g. plant morphology, light-dependent leaves number, branch number, flowering time, phytate and mineral concentrations) by transducing microenvironmental variation into phenotypic differentiation (ecological amplifier). May maintain development integrity in heat stress conditions. Regulates cell wall composition and structure. Confers resistance to the pathogenic bacteria Ralstonia solanacearum and to the necrotrophic fungi Plectosphaerella cucumerina and Pythium irregulare, and required for callose deposition upon infection. Resistance to P.cucumerina seems cell wall-mediated.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9M2Z1|BAME2_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM2 OS=Arabidopsis thaliana GN=BAM2 PE=1 SV=1

 Score =  313 bits (803), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 264/881 (29%), Positives = 402/881 (45%), Gaps = 155/881 (17%)

Query: 12  QALLALKAHISYDHTNLFARNWTSSTSVCIWIGITCDVNSHRVIGLNISSFNLQGTITPQ 71
            ALL+LK+  + D  +    +W  ST+ C W G+TCDV+   V  L++S  NL GT++  
Sbjct: 29  HALLSLKSSFTIDEHSPLLTSWNLSTTFCSWTGVTCDVSLRHVTSLDLSGLNLSGTLSSD 88

Query: 72  LGNLSSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQLFGS----LSSFIFNMSSMT 127
           + +L  LQ L L+ N++SG IP  I N++ L+ L+ S+N   GS    LSS + N+    
Sbjct: 89  VAHLPLLQNLSLAANQISGPIPPQISNLYELRHLNLSNNVFNGSFPDELSSGLVNLR--- 145

Query: 128 TIDLSINRLSGELPANIC-----------------KIPSTLSKCKQLEELNLGFNNLSGA 170
            +DL  N L+G+LP ++                  KIP+T      LE L +  N L+G 
Sbjct: 146 VLDLYNNNLTGDLPVSLTNLTQLRHLHLGGNYFSGKIPATYGTWPVLEYLAVSGNELTGK 205

Query: 171 IPKEIGNLTKLKEIISTITNSTVCEIPREIGNLPYLARLALATNNLVGVVPVTIFNM--- 227
           IP EIGNLT L+E+     N+    +P EIGNL  L R   A   L G +P  I  +   
Sbjct: 206 IPPEIGNLTTLRELYIGYYNAFENGLPPEIGNLSELVRFDAANCGLTGEIPPEIGKLQKL 265

Query: 228 ---------------------SALKEISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFS 266
                                S+LK + L NN  +G +P+     L N+  LNL  N   
Sbjct: 266 DTLFLQVNAFTGTITQELGLISSLKSMDLSNNMFTGEIPTSFS-QLKNLTLLNLFRNKLY 324

Query: 267 GTIPSSITNSSKLSDLELGENLFSGFIPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSL 326
           G IP  I    +L  L+L EN F+G IP  +G    L   +++ N LT + P      ++
Sbjct: 325 GAIPEFIGEMPELEVLQLWENNFTGSIPQKLGENGRLVILDLSSNKLTGTLP-----PNM 379

Query: 327 TNCKKLKVLIVTGNPLDGILPKSIGNFSLSLETILMANCSISGNIPQVVGNLSNLLVLEL 386
            +  +L  LI  GN L G +P S+G    SL  I M    ++G+IP+ +  L  L  +EL
Sbjct: 380 CSGNRLMTLITLGNFLFGSIPDSLGKCE-SLTRIRMGENFLNGSIPKELFGLPKLSQVEL 438

Query: 387 GGNNLTGPIPVTFSQLQ-TLQAFDLTRNKLAGPITDELCHLARLHSLVLQGNKFSGSIPS 445
             N LTG +P++   +   L    L+ N+L+G +   + +L+ +  L+L GNKFSGSIP 
Sbjct: 439 QDNYLTGELPISGGGVSGDLGQISLSNNQLSGSLPAAIGNLSGVQKLLLDGNKFSGSIPP 498

Query: 446 CLGNLTSVRVLYLGLNIFTSVLSSTIWNLKDILFIDVSSNFLDGPLSLDIGNLKVVIGLD 505
            +G L  +  L    N+F+  ++  I   K + F+D+S N L G +  ++  +K++  L+
Sbjct: 499 EIGRLQQLSKLDFSHNLFSGRIAPEISRCKLLTFVDLSRNELSGDIPNELTGMKILNYLN 558

Query: 506 FSRNNLSGDIPITIG---------------EGEIPRGGPFANLTAKSFMGNELLCGLPDL 550
            SRN+L G IP+TI                 G +P  G F+     SF+GN  LCG P L
Sbjct: 559 LSRNHLVGSIPVTIASMQSLTSVDFSYNNLSGLVPSTGQFSYFNYTSFVGNSHLCG-PYL 617

Query: 551 QVSPCKPNKPNTHKKSRKMLLLVIVLPLSTA-----LIVVVTLTLKWKLIKCWKSRTGPS 605
              PC      +H K           PLS       ++ ++  ++ + ++   K+R   S
Sbjct: 618 --GPCGKGTHQSHVK-----------PLSATTKLLLVLGLLFCSMVFAIVAIIKAR---S 661

Query: 606 NDGINSPQAIRRFSYHEL----LRATDRFSENNLIGIG-----------NGMEVAVKVFH 650
               +  +A R  ++  L        D   E+N+IG G            G  VAVK   
Sbjct: 662 LRNASEAKAWRLTAFQRLDFTCDDVLDSLKEDNIIGKGGAGIVYKGTMPKGDLVAVKRLA 721

Query: 651 QQYERALKS--FEDECEVRKRIRHRNLVKII----------------------------- 679
                +     F  E +   RIRHR++V+++                             
Sbjct: 722 TMSHGSSHDHGFNAEIQTLGRIRHRHIVRLLGFCSNHETNLLVYEYMPNGSLGEVLHGKK 781

Query: 680 ----------------SSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLL 723
                           +  L YLH   S  I+H D+K +N+LLD +  AH++DFG+AK L
Sbjct: 782 GGHLHWNTRYKIALEAAKGLCYLHHDCSPLIVHRDVKSNNILLDSNFEAHVADFGLAKFL 841

Query: 724 SGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
                    +    + GY+APEY    +V  + DV SFG++
Sbjct: 842 QDSGTSECMSAIAGSYGYIAPEYAYTLKVDEKSDVYSFGVV 882

Necessary for male gametophyte development, as well as ovule specification and function. Involved in cell-cell communication process required during early anther development, and regulating cell division and differentiation to organize cell layers. Required for the development of high-ordered vascular strands within the leaf and a correlated control of leaf shape, size and symmetry. May regulate the CLV1-dependent CLV3-mediated signaling in meristems maintenance.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGW6|ERL1_ARATH LRR receptor-like serine/threonine-protein kinase ERL1 OS=Arabidopsis thaliana GN=ERL1 PE=2 SV=1

 Score =  312 bits (800), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 257/851 (30%), Positives = 393/851 (46%), Gaps = 123/851 (14%)

Query: 3   LKSIISQHQQALLALKAHISYDHTNLFARNWTSSTSVCIWIGITCDVNSHRVIGLNISSF 62
           + S ++   +AL+A+K   S     L   +   ++ +C W G+ CD  S+ V+ LN+SS 
Sbjct: 22  VASAMNNEGKALMAIKGSFSNLVNMLLDWDDVHNSDLCSWRGVFCDNVSYSVVSLNLSSL 81

Query: 63  NLQGTITPQLGNLSSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQLFGSLSSFIFN 122
           NL G I+P +G+L +LQ++DL  NKL+G IP  I N  +L  LD S+N L+G +   I  
Sbjct: 82  NLGGEISPAIGDLRNLQSIDLQGNKLAGQIPDEIGNCASLVYLDLSENLLYGDIPFSISK 141

Query: 123 MSSMTTIDLSINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEIGNLTKLK 182
           +  + T++L  N+L+G +PA + +IP+       L+ L+L  N+L+G    EI  L    
Sbjct: 142 LKQLETLNLKNNQLTGPVPATLTQIPN-------LKRLDLAGNHLTG----EISRLLYWN 190

Query: 183 EIISTIT---NSTVCEIPREIGNLPYLARLALATNNLVGVVPVTIFNMSALKEISLLNNS 239
           E++  +    N     +  ++  L  L    +  NNL G +P +I N ++ + + +  N 
Sbjct: 191 EVLQYLGLRGNMLTGTLSSDMCQLTGLWYFDVRGNNLTGTIPESIGNCTSFQILDISYNQ 250

Query: 240 LSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSITNSSKLSDLELGENLFSGFIPNTIGN 299
           ++G +P  I      V TL+L  N  +G IP  I     L+ L+L +N   G IP  +GN
Sbjct: 251 ITGEIPYNI--GFLQVATLSLQGNRLTGRIPEVIGLMQALAVLDLSDNELVGPIPPILGN 308

Query: 300 LRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGILPKSIGNFSLSLET 359
           L       +  N LT   P     S L N  +L  L +  N L G +P  +G      E 
Sbjct: 309 LSFTGKLYLHGNMLTGPIP-----SELGNMSRLSYLQLNDNKLVGTIPPELGKLEQLFE- 362

Query: 360 ILMANCSISGNIPQVVGNLSNLLVLELGGNNLTGPIPVTFSQLQTLQAFDLTRNKLAGPI 419
           + +AN  + G IP  + + + L    + GN L+G IP+ F  L +L   +L+ N   G I
Sbjct: 363 LNLANNRLVGPIPSNISSCAALNQFNVHGNLLSGSIPLAFRNLGSLTYLNLSSNNFKGKI 422

Query: 420 TDELCHLARLHSLVLQGNKFSGSIPSCLGNLTSVRVLYLGLNIFTSVLSSTIWNLKDILF 479
             EL H+  L  L L GN FSGSIP  LG+L  + +L L  N  +  L +   NL+ I  
Sbjct: 423 PVELGHIINLDKLDLSGNNFSGSIPLTLGDLEHLLILNLSRNHLSGQLPAEFGNLRSIQM 482

Query: 480 IDVSSNFLDGPLSLDIG------------------------NLKVVIGLDFSRNNLSGDI 515
           IDVS N L G +  ++G                        N   ++ L+ S NNLSG +
Sbjct: 483 IDVSFNLLSGVIPTELGQLQNLNSLILNNNKLHGKIPDQLTNCFTLVNLNVSFNNLSGIV 542

Query: 516 PITIGEGEIPRGGPFANLTAKSFMGNELLCGLPDLQVSPCKPNKPNTHKKSRKMLLLVI- 574
           P        P    F+     SF+GN  LCG  +   S C P  P +   SR  L+ ++ 
Sbjct: 543 P--------PMKN-FSRFAPASFVGNPYLCG--NWVGSICGP-LPKSRVFSRGALICIVL 590

Query: 575 -VLPLSTALIVVVTLTLKWKLIKCWKSRTGPSNDG---INSPQAIRRFSYHELLRATDRF 630
            V+ L   + + V  +++ K I    S+          ++   AI  F   +++R T+  
Sbjct: 591 GVITLLCMIFLAVYKSMQQKKILQGSSKQAEGLTKLVILHMDMAIHTFD--DIMRVTENL 648

Query: 631 SENNLIGIG-----------NGMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVKI- 678
           +E  +IG G           +   +A+K  + QY   L+ FE E E    IRHRN+V + 
Sbjct: 649 NEKFIIGYGASSTVYKCALKSSRPIAIKRLYNQYPHNLREFETELETIGSIRHRNIVSLH 708

Query: 679 ---------------------------------------------ISSSLEYLHFGHSIP 693
                                                         +  L YLH   +  
Sbjct: 709 GYALSPTGNLLFYDYMENGSLWDLLHGSLKKVKLDWETRLKIAVGAAQGLAYLHHDCTPR 768

Query: 694 IIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVS 753
           IIH D+K SN+LLDE+  AH+SDFGIAK +    +    T  L TIGY+ PEY    R++
Sbjct: 769 IIHRDIKSSNILLDENFEAHLSDFGIAKSIPAS-KTHASTYVLGTIGYIDPEYARTSRIN 827

Query: 754 TRGDVCSFGII 764
            + D+ SFGI+
Sbjct: 828 EKSDIYSFGIV 838

Receptor kinase that regulates inflorescence architecture and organ shape as well as stomatal patterning, including density and clustering, together with ER and ERL2.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O49545|BAME1_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 OS=Arabidopsis thaliana GN=BAM1 PE=1 SV=1

 Score =  312 bits (799), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 271/881 (30%), Positives = 407/881 (46%), Gaps = 149/881 (16%)

Query: 12  QALLALKAHI--SYDHTNLFARNWTSSTSVCIWIGITCDVNSHRVIGLNISSFNLQGTIT 69
           +ALL+LK  +  + D  N    +W  STS C WIG+TCDV+   V  L++S  NL GT++
Sbjct: 27  RALLSLKTSLTGAGDDKNSPLSSWKVSTSFCTWIGVTCDVSRRHVTSLDLSGLNLSGTLS 86

Query: 70  PQLGNLSSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQLFGSLSSFIFN-MSSMTT 128
           P + +L  LQ L L+ N +SG IP  I ++  L+ L+ S+N   GS    I + + ++  
Sbjct: 87  PDVSHLRLLQNLSLAENLISGPIPPEISSLSGLRHLNLSNNVFNGSFPDEISSGLVNLRV 146

Query: 129 IDLSINRLSGELPANIC-----------------KIPSTLSKCKQLEELNLGFNNLSGAI 171
           +D+  N L+G+LP ++                  KIP +      +E L +  N L G I
Sbjct: 147 LDVYNNNLTGDLPVSVTNLTQLRHLHLGGNYFAGKIPPSYGSWPVIEYLAVSGNELVGKI 206

Query: 172 PKEIGNLTKLKEIISTITNSTVCEIPREIGNLPYLARLALATNNLVGVVP---------- 221
           P EIGNLT L+E+     N+    +P EIGNL  L R   A   L G +P          
Sbjct: 207 PPEIGNLTTLRELYIGYYNAFEDGLPPEIGNLSELVRFDGANCGLTGEIPPEIGKLQKLD 266

Query: 222 -----VTIFN---------MSALKEISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSG 267
                V +F+         +S+LK + L NN  +G +P+     L N+  LNL  N   G
Sbjct: 267 TLFLQVNVFSGPLTWELGTLSSLKSMDLSNNMFTGEIPASF-AELKNLTLLNLFRNKLHG 325

Query: 268 TIPSSITNSSKLSDLELGENLFSGFIPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLT 327
            IP  I +  +L  L+L EN F+G IP  +G    L   +++ N LT + P      ++ 
Sbjct: 326 EIPEFIGDLPELEVLQLWENNFTGSIPQKLGENGKLNLVDLSSNKLTGTLP-----PNMC 380

Query: 328 NCKKLKVLIVTGNPLDGILPKSIGNFSLSLETILMANCSISGNIPQVVGNLSNLLVLELG 387
           +  KL+ LI  GN L G +P S+G    SL  I M    ++G+IP+ +  L  L  +EL 
Sbjct: 381 SGNKLETLITLGNFLFGSIPDSLGKCE-SLTRIRMGENFLNGSIPKGLFGLPKLTQVELQ 439

Query: 388 GNNLTGPIPVTFSQLQTLQAFDLTRNKLAGPITDELCHLARLHSLVLQGNKFSGSIPSCL 447
            N L+G +PV       L    L+ N+L+GP+   + +   +  L+L GNKF G IPS +
Sbjct: 440 DNYLSGELPVAGGVSVNLGQISLSNNQLSGPLPPAIGNFTGVQKLLLDGNKFQGPIPSEV 499

Query: 448 GNLTSVRVLYLGLNIFTSVLSSTIWNLKDILFIDVSSNFLDGPLSLDIGNLKVVIGLDFS 507
           G L  +  +    N+F+  ++  I   K + F+D+S N L G +  +I  +K++  L+ S
Sbjct: 500 GKLQQLSKIDFSHNLFSGRIAPEISRCKLLTFVDLSRNELSGEIPNEITAMKILNYLNLS 559

Query: 508 RNNLSGDIPITIG---------------EGEIPRGGPFANLTAKSFMGNELLCGLPDLQV 552
           RN+L G IP +I                 G +P  G F+     SF+GN  LCG P L  
Sbjct: 560 RNHLVGSIPGSISSMQSLTSLDFSYNNLSGLVPGTGQFSYFNYTSFLGNPDLCG-PYL-- 616

Query: 553 SPCK----PNKPNTHKK-----SRKMLLLVIVLPLSTALIVVVTLTLKWKLIKCWKSRTG 603
            PCK         +H K     S K+LL++ +L  S A  VV  +  +  L K  +SR  
Sbjct: 617 GPCKDGVAKGGHQSHSKGPLSASMKLLLVLGLLVCSIAFAVVAIIKAR-SLKKASESRAW 675

Query: 604 PSNDGINSPQAIRR--FSYHELLRATDRFSENNLIGIG-----------NGMEVAVKVFH 650
                     A +R  F+  ++L   D   E+N+IG G           NG  VAVK   
Sbjct: 676 -------RLTAFQRLDFTCDDVL---DSLKEDNIIGKGGAGIVYKGVMPNGDLVAVKRLA 725

Query: 651 QQYERALKS--FEDECEVRKRIRHRNLVKII----------------------------- 679
                +     F  E +   RIRHR++V+++                             
Sbjct: 726 AMSRGSSHDHGFNAEIQTLGRIRHRHIVRLLGFCSNHETNLLVYEYMPNGSLGEVLHGKK 785

Query: 680 ----------------SSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLL 723
                           +  L YLH   S  I+H D+K +N+LLD +  AH++DFG+AK L
Sbjct: 786 GGHLHWDTRYKIALEAAKGLCYLHHDCSPLIVHRDVKSNNILLDSNFEAHVADFGLAKFL 845

Query: 724 SGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
                    +    + GY+APEY    +V  + DV SFG++
Sbjct: 846 QDSGTSECMSAIAGSYGYIAPEYAYTLKVDEKSDVYSFGVV 886

Necessary for male gametophyte development, as well as ovule specification and function. Involved in cell-cell communication process required during early anther development, and regulating cell division and differentiation to organize cell layers. Required for the development of high-ordered vascular strands within the leaf and a correlated control of leaf shape, size and symmetry. May regulate the CLV1-dependent CLV3-mediated signaling in meristems maintenance.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9ZUI0|Y2241_ARATH Putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g24130 OS=Arabidopsis thaliana GN=At2g24130 PE=3 SV=1

 Score =  305 bits (780), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 281/892 (31%), Positives = 422/892 (47%), Gaps = 135/892 (15%)

Query: 39  VCIWIGITCDVNSHRVIGLNISSFNLQGTITPQLGNLSSLQTLDLSHNKLSGNIPSSIFN 98
           VC W G+ C+  S +VI L+IS  +L G I+P + NL+ L  LDLS N   G IP  I +
Sbjct: 53  VCNWSGVKCNKESTQVIELDISGRDLGGEISPSIANLTGLTVLDLSRNFFVGKIPPEIGS 112

Query: 99  MH-TLKLLDFSDNQLFGSLSSFIFNMSSMTTIDLSINRLSGELPANI-C----------- 145
           +H TLK L  S+N L G++   +  ++ +  +DL  NRL+G +P  + C           
Sbjct: 113 LHETLKQLSLSENLLHGNIPQELGLLNRLVYLDLGSNRLNGSIPVQLFCNGSSSSLQYID 172

Query: 146 --------KIP-STLSKCKQLEELNLGFNNLSGAIPKEIGNLTKLKEIISTITNSTVCEI 196
                   +IP +     K+L  L L  N L+G +P  + N T LK  +   +N    E+
Sbjct: 173 LSNNSLTGEIPLNYHCHLKELRFLLLWSNKLTGTVPSSLSNSTNLK-WMDLESNMLSGEL 231

Query: 197 PRE-IGNLPYLARLALATNNLVG------VVP--VTIFNMSALKEISLLNNSLSGSLPSR 247
           P + I  +P L  L L+ N+ V       + P   ++ N S L+E+ L  NSL G + S 
Sbjct: 232 PSQVISKMPQLQFLYLSYNHFVSHNNNTNLEPFFASLANSSDLQELELAGNSLGGEITSS 291

Query: 248 IDLSLPNVETLNLGINSFSGTIPSSITNSSKLSDLELGENLFSGFIPNTIGNLRNLEFGN 307
           +     N+  ++L  N   G+IP  I+N   L+ L L  NL SG IP  +  L  LE   
Sbjct: 292 VRHLSVNLVQIHLDQNRIHGSIPPEISNLLNLTLLNLSSNLLSGPIPRELCKLSKLERVY 351

Query: 308 IADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGILPKSIGNFSLSLETILMANCSI 367
           +++N+LT   P       L +  +L +L V+ N L G +P S GN S  L  +L+    +
Sbjct: 352 LSNNHLTGEIP-----MELGDIPRLGLLDVSRNNLSGSIPDSFGNLS-QLRRLLLYGNHL 405

Query: 368 SGNIPQVVGNLSNLLVLELGGNNLTGPIPV-TFSQLQTLQAF-DLTRNKLAGPITDELCH 425
           SG +PQ +G   NL +L+L  NNLTG IPV   S L+ L+ + +L+ N L+GPI  EL  
Sbjct: 406 SGTVPQSLGKCINLEILDLSHNNLTGTIPVEVVSNLRNLKLYLNLSSNHLSGPIPLELSK 465

Query: 426 LARLHSLVLQGNKFSGSIPSCLGNLTSVRVLYLGLNIFTSVLSSTIWNLKDILFIDVSSN 485
           +  + S+ L  N+ SG IP  LG+  ++  L L  N F+S L S++  L  +  +DVS N
Sbjct: 466 MDMVLSVDLSSNELSGKIPPQLGSCIALEHLNLSRNGFSSTLPSSLGQLPYLKELDVSFN 525

Query: 486 FLDGPLSLDIGNLKVVIGLDFSRNNLSGDIPITIGEGEIPRGGPFANLTAKSFMGNELLC 545
            L G +         +  L+FS N LSG+         +   G F+ LT +SF+G+ LLC
Sbjct: 526 RLTGAIPPSFQQSSTLKHLNFSFNLLSGN---------VSDKGSFSKLTIESFLGDSLLC 576

Query: 546 G-LPDLQVSPCKPNKPNTHKKSRKMLLLVIVLPLSTALIVVVTLTLKWKLIKCWKSRTGP 604
           G +  +Q    K   P+        L+   VL +    +V  +   K   +   +     
Sbjct: 577 GSIKGMQACKKKHKYPSVLLPVLLSLIATPVLCVFGYPLVQRSRFGKNLTVYAKEEVEDE 636

Query: 605 SNDGINSPQAIRRFSYHELLRATDRFSENNLIGIG-----------NGMEVAVKVFHQQY 653
                N P+   R SY +L+ AT  F+ ++LIG G           N  +VAVKV   + 
Sbjct: 637 EKQNQNDPK-YPRISYQQLIAATGGFNASSLIGSGRFGHVYKGVLRNNTKVAVKVLDPKT 695

Query: 654 ERALK-SFEDECEVRKRIRHRNLVKIISS-----------------SLE----------- 684
                 SF+ EC++ KR RHRNL++II++                 SLE           
Sbjct: 696 ALEFSGSFKRECQILKRTRHRNLIRIITTCSKPGFNALVLPLMPNGSLERHLYPGEYSSK 755

Query: 685 -------------------YLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSG 725
                              YLH    + ++HCDLKPSN+LLD++M A ++DFGI++L+ G
Sbjct: 756 NLDLIQLVNICSDVAEGIAYLHHYSPVKVVHCDLKPSNILLDDEMTALVTDFGISRLVQG 815

Query: 726 EDQLSKQTQTLA----------TIGYMAPEYGTKGRVSTRGDVCSFGI----ISGGKETR 771
            ++      +++          ++GY+APEYG   R ST GDV SFG+    I  G+   
Sbjct: 816 VEETVSTDDSVSFGSTDGLLCGSVGYIAPEYGMGKRASTHGDVYSFGVLLLEIVSGRRPT 875

Query: 772 SMTVGETCTPVRESKYEVHPATTTIMEHPLPRVGEVMDVDRGKARIQGKPIK 823
            + V E  +     K     +   I+E  L R            + QGKP K
Sbjct: 876 DVLVNEGSSLHEFMKSHYPDSLEGIIEQALSR-----------WKPQGKPEK 916

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q6XAT2|ERL2_ARATH LRR receptor-like serine/threonine-protein kinase ERL2 OS=Arabidopsis thaliana GN=ERL2 PE=2 SV=1

 Score =  305 bits (780), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 254/847 (29%), Positives = 387/847 (45%), Gaps = 108/847 (12%)

Query: 1   MLLKSI--ISQHQQALLALKAHISYDHTNLFARNWTSSTSVCIWIGITCDVNSHRVIGLN 58
           MLL S+  ++   +AL+A+KA  S     L   +   +   C W G+ CD  S  V+ LN
Sbjct: 20  MLLGSVSPMNNEGKALMAIKASFSNVANMLLDWDDVHNHDFCSWRGVFCDNVSLNVVSLN 79

Query: 59  ISSFNLQGTITPQLGNLSSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQLFGSLSS 118
           +S+ NL G I+  LG+L +LQ++DL  NKL G IP  I N  +L  +DFS N LFG +  
Sbjct: 80  LSNLNLGGEISSALGDLMNLQSIDLQGNKLGGQIPDEIGNCVSLAYVDFSTNLLFGDIPF 139

Query: 119 FIFNMSSMTTIDLSINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEIGNL 178
            I  +  +  ++L  N+L+G +PA + +IP+       L+ L+L  N L+G IP+    L
Sbjct: 140 SISKLKQLEFLNLKNNQLTGPIPATLTQIPN-------LKTLDLARNQLTGEIPR----L 188

Query: 179 TKLKEIISTIT---NSTVCEIPREIGNLPYLARLALATNNLVGVVPVTIFNMSALKEISL 235
               E++  +    N     +  ++  L  L    +  NNL G +P +I N ++ + + +
Sbjct: 189 LYWNEVLQYLGLRGNMLTGTLSPDMCQLTGLWYFDVRGNNLTGTIPESIGNCTSFEILDV 248

Query: 236 LNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSITNSSKLSDLELGENLFSGFIPN 295
             N ++G +P  I      V TL+L  N  +G IP  I     L+ L+L +N  +G IP 
Sbjct: 249 SYNQITGVIPYNI--GFLQVATLSLQGNKLTGRIPEVIGLMQALAVLDLSDNELTGPIPP 306

Query: 296 TIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGILPKSIGNFSL 355
            +GNL       +  N LT   P       L N  +L  L +  N L G +P  +G    
Sbjct: 307 ILGNLSFTGKLYLHGNKLTGQIP-----PELGNMSRLSYLQLNDNELVGKIPPELGKLEQ 361

Query: 356 SLETILMANCSISGNIPQVVGNLSNLLVLELGGNNLTGPIPVTFSQLQTLQAFDLTRNKL 415
             E + +AN ++ G IP  + + + L    + GN L+G +P+ F  L +L   +L+ N  
Sbjct: 362 LFE-LNLANNNLVGLIPSNISSCAALNQFNVHGNFLSGAVPLEFRNLGSLTYLNLSSNSF 420

Query: 416 AGPITDELCHLARLHSLVLQGNKFSGSIPSCLGNLTSVRVLYLGLNIFTSVLSSTIWNLK 475
            G I  EL H+  L +L L GN FSGSIP  LG+L  + +L L  N     L +   NL+
Sbjct: 421 KGKIPAELGHIINLDTLDLSGNNFSGSIPLTLGDLEHLLILNLSRNHLNGTLPAEFGNLR 480

Query: 476 DILFIDVSSNFLDGPLSLDIGNLKVVIGLDFSRNNLSGDIPITIG--------------- 520
            I  IDVS NFL G +  ++G L+ +  L  + N + G IP  +                
Sbjct: 481 SIQIIDVSFNFLAGVIPTELGQLQNINSLILNNNKIHGKIPDQLTNCFSLANLNISFNNL 540

Query: 521 EGEIPRGGPFANLTAKSFMGNELLCGLPDLQVSPCKPNKPNTHKKSRKMLLLVIVLPLST 580
            G IP    F   +  SF GN  LCG  +   S C P+ P +   +R + ++ +VL   T
Sbjct: 541 SGIIPPMKNFTRFSPASFFGNPFLCG--NWVGSICGPSLPKSQVFTR-VAVICMVLGFIT 597

Query: 581 ALIVVVTLTLKWKLIKCWKSRTGPSNDG------INSPQAIRRFSYHELLRATDRFSENN 634
            + ++     K K  K     +    +G      ++   AI  F   +++R T+   E  
Sbjct: 598 LICMIFIAVYKSKQQKPVLKGSSKQPEGSTKLVILHMDMAIHTFD--DIMRVTENLDEKY 655

Query: 635 LIGIG-----------NGMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVKI----- 678
           +IG G               +A+K  + QY    + FE E E    IRHRN+V +     
Sbjct: 656 IIGYGASSTVYKCTSKTSRPIAIKRIYNQYPSNFREFETELETIGSIRHRNIVSLHGYAL 715

Query: 679 -----------------------------------------ISSSLEYLHFGHSIPIIHC 697
                                                     +  L YLH   +  IIH 
Sbjct: 716 SPFGNLLFYDYMENGSLWDLLHGPGKKVKLDWETRLKIAVGAAQGLAYLHHDCTPRIIHR 775

Query: 698 DLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGD 757
           D+K SN+LLD +  A +SDFGIAK +      +  T  L TIGY+ PEY    R++ + D
Sbjct: 776 DIKSSNILLDGNFEARLSDFGIAKSIPATKTYAS-TYVLGTIGYIDPEYARTSRLNEKSD 834

Query: 758 VCSFGII 764
           + SFGI+
Sbjct: 835 IYSFGIV 841

Receptor kinase that regulates inflorescence architecture and organ shape as well as stomatal patterning, including density and clustering, together with ERL1 and ER.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8VZG8|Y4885_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS=Arabidopsis thaliana GN=At4g08850 PE=1 SV=3

 Score =  304 bits (778), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 250/837 (29%), Positives = 378/837 (45%), Gaps = 141/837 (16%)

Query: 57  LNISSFNLQGTITPQLGNLSSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQLFGSL 116
            ++S   L G I P+LG+LS+L TL L  NKL+G+IPS I  +  +  +   DN L G +
Sbjct: 147 FDLSINQLVGEIPPELGDLSNLDTLHLVENKLNGSIPSEIGRLTKVTEIAIYDNLLTGPI 206

Query: 117 SSFIFNMSSMTTIDLSINRLSGELPANI---------C--------KIPSTLSKCKQLEE 159
            S   N++ +  + L IN LSG +P+ I         C        KIPS+    K +  
Sbjct: 207 PSSFGNLTKLVNLYLFINSLSGSIPSEIGNLPNLRELCLDRNNLTGKIPSSFGNLKNVTL 266

Query: 160 LNLGFNNLSGAIPKEIGNLTKLKEIISTITNSTVCEIPREIGNLPYLARLALATNNLVGV 219
           LN+  N LSG IP EIGN+T L + +S  TN     IP  +GN+  LA L L  N L G 
Sbjct: 267 LNMFENQLSGEIPPEIGNMTAL-DTLSLHTNKLTGPIPSTLGNIKTLAVLHLYLNQLNGS 325

Query: 220 VPVTIFNMSALKEISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSITNSSKL 279
           +P  +  M ++ ++ +  N L+G +P      L  +E L L  N  SG IP  I NS++L
Sbjct: 326 IPPELGEMESMIDLEISENKLTGPVPDSFG-KLTALEWLFLRDNQLSGPIPPGIANSTEL 384

Query: 280 SDLELGENLFSGFIPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTG 339
           + L+L  N F+GF+P+TI     LE   + DN+     P+     SL +CK L  +   G
Sbjct: 385 TVLQLDTNNFTGFLPDTICRGGKLENLTLDDNHFEGPVPK-----SLRDCKSLIRVRFKG 439

Query: 340 NPLDGILPKSIG-------------NF----------SLSLETILMANCSISGNIPQVVG 376
           N   G + ++ G             NF          S  L   +++N SI+G IP  + 
Sbjct: 440 NSFSGDISEAFGVYPTLNFIDLSNNNFHGQLSANWEQSQKLVAFILSNNSITGAIPPEIW 499

Query: 377 NLSNLLVLELGGNNLTGPIPVTFSQLQTLQAFDLTRNKLAGPITDELCHLARLHSLVLQG 436
           N++ L  L+L  N +TG +P + S +  +    L  N+L+G I   +  L  L  L L  
Sbjct: 500 NMTQLSQLDLSSNRITGELPESISNINRISKLQLNGNRLSGKIPSGIRLLTNLEYLDLSS 559

Query: 437 NKFSGSIPSCLGNLTSVRVLYLGLNIFTSVLSSTIWNLKDILFIDVSSNFLDGPLSLDIG 496
           N+FS  IP  L NL  +  + L  N     +   +  L  +  +D+S N LDG +S    
Sbjct: 560 NRFSSEIPPTLNNLPRLYYMNLSRNDLDQTIPEGLTKLSQLQMLDLSYNQLDGEISSQFR 619

Query: 497 NLKVVIGLDFSRNNLSGDIPITIG---------------EGEIPRGGPFANLTAKSFMGN 541
           +L+ +  LD S NNLSG IP +                 +G IP    F N    +F GN
Sbjct: 620 SLQNLERLDLSHNNLSGQIPPSFKDMLALTHVDVSHNNLQGPIPDNAAFRNAPPDAFEGN 679

Query: 542 ELLCGLPDLQ--VSPCKPNKPNTHKKSRKMLLLVIVLPLSTALIVVVTLTLKWKLIKCWK 599
           + LCG  +    + PC         K R +++ ++V P+  A+I+   L++   +  C++
Sbjct: 680 KDLCGSVNTTQGLKPCSITSSKKSHKDRNLIIYILV-PIIGAIII---LSVCAGIFICFR 735

Query: 600 SRTGPSNDGINSPQAIRRFS---------YHELLRATDRFSENNLIGIGNGMEV------ 644
            RT    +  +S       S         Y E+++AT  F    LIG G   +V      
Sbjct: 736 KRTKQIEEHTDSESGGETLSIFSFDGKVRYQEIIKATGEFDPKYLIGTGGHGKVYKAKLP 795

Query: 645 ----AVKVFHQQYERAL------KSFEDECEVRKRIRHRNLVKI---------------- 678
               AVK  ++  + ++      + F +E      IRHRN+VK+                
Sbjct: 796 NAIMAVKKLNETTDSSISNPSTKQEFLNEIRALTEIRHRNVVKLFGFCSHRRNTFLVYEY 855

Query: 679 ------------------------------ISSSLEYLHFGHSIPIIHCDLKPSNVLLDE 708
                                         ++ +L Y+H   S  I+H D+   N+LL E
Sbjct: 856 MERGSLRKVLENDDEAKKLDWGKRINVVKGVAHALSYMHHDRSPAIVHRDISSGNILLGE 915

Query: 709 DMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIIS 765
           D  A ISDFG AKLL  +   S  +    T GY+APE     +V+ + DV SFG+++
Sbjct: 916 DYEAKISDFGTAKLLKPDS--SNWSAVAGTYGYVAPELAYAMKVTEKCDVYSFGVLT 970

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	823
255572272	1089	serine-threonine protein kinase, plant-t	0.907	0.685	0.392	1e-164
359483198	1087	PREDICTED: probable LRR receptor-like se	0.924	0.700	0.391	1e-159
147853795	1420	hypothetical protein VITISV_005816 [Viti	0.886	0.514	0.404	1e-155
147852480	1229	hypothetical protein VITISV_039533 [Viti	0.856	0.573	0.403	1e-155
359483677	1229	PREDICTED: LRR receptor-like serine/thre	0.897	0.601	0.391	1e-154
147776333	1205	hypothetical protein VITISV_000078 [Viti	0.840	0.574	0.403	1e-154
147769371	1241	hypothetical protein VITISV_010511 [Viti	0.856	0.568	0.4	1e-153
359485451	1454	PREDICTED: LRR receptor-like serine/thre	0.834	0.472	0.410	1e-152
224116832	1061	predicted protein [Populus trichocarpa]	0.869	0.674	0.402	1e-152
359497186	1140	PREDICTED: LRR receptor-like serine/thre	0.895	0.646	0.388	1e-152

>gi|255572272|ref|XP_002527075.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223533580|gb|EEF35319.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  586 bits (1510), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 378/962 (39%), Positives = 509/962 (52%), Gaps = 215/962 (22%)

Query: 13  ALLALKAHISYDHTNLFARNWTSSTSVCIWIGITCDVNSHRVIGLNISSFNLQGTITPQL 72
           ALL LK H ++D     ++NW+S+TS C W G+TC    +RV+ L +S+  ++G + P +
Sbjct: 34  ALLVLKEHSNFDP--FMSKNWSSATSFCHWYGVTCSERHNRVVALTLSNMGIKGIVPPHI 91

Query: 73  GNLSSLQTLDLSHNKLSGNIP--------------------------------------- 93
           GNLS L  +D+S+N  SG++P                                       
Sbjct: 92  GNLSFLVHIDMSNNSYSGHLPNELGNLHRLKFMNFSNNSFVGEIPSSLAMLPKLQHLLLA 151

Query: 94  --------SSIFNMHTLKLLDFSDN-------------------------QLFGSLSSFI 120
                   SSIFN+ TL  LD +DN                         QL GS    I
Sbjct: 152 NNSLTAGRSSIFNITTLNTLDLNDNLLGGNILDNIGGNLSNLQVLNMGLNQLSGSFPPKI 211

Query: 121 FNMSSMTTIDLSINRLSGELPANIC------------------KIPSTLSKCKQLEELNL 162
            ++ S+  I L +N LSG L   +C                  +IPS L KCK+L  L L
Sbjct: 212 LDLPSLKFIYLQVNNLSGNLKEILCNQNSKLQLLNLAGNQLYGQIPSDLYKCKELRSLAL 271

Query: 163 GFNNLSGAIPKEIGNLTKLKEIISTITNSTVCEIPREIGNLPYLARLALATNNLVGVVPV 222
             N  +G+IP+ IGNLTKLK  +S   N+    IP EIGNL  L  + L+ NNL G +P 
Sbjct: 272 HANKFTGSIPRTIGNLTKLK-WLSLGRNNLTGRIPLEIGNLQNLQIVHLSFNNLNGSIPH 330

Query: 223 TIFNMSALKEISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSITNSSKLSDL 282
            +FN+S +K I++ +N+L G+LP+ + L LPN+  L LGIN  SG IPS I+N+SKL+ L
Sbjct: 331 ALFNISTMKWIAMTSNNLLGNLPTSLGLHLPNLIWLYLGINKLSGPIPSYISNASKLTIL 390

Query: 283 ELGENLFSGFIPNTIGNLRNLEFGNIADNYLTS--STPELSFLSSLTNCKKLKVLIVTGN 340
           EL  N F+GFIP+++G+LRNL+   +  N L+S  ++ EL+  SSL NC+ LK L ++ N
Sbjct: 391 ELPSNSFTGFIPDSLGDLRNLQTLKLGANLLSSKKTSQELTIFSSLKNCQNLKYLWLSYN 450

Query: 341 PLDGILPKSIGNFSLSLETILMANCSISGNIPQVVGNLSNLLVLELGGNNLTGPIPVTFS 400
           PLDG LP S+GN S SLE+ L ++  I G++ + +GNLS+L  L LG N+LTG IP T  
Sbjct: 451 PLDGYLPHSVGNLSNSLESFLASDGLIKGSVHESIGNLSSLTRLNLGNNDLTGRIPTTIG 510

Query: 401 QLQTLQAFDLTRNKLAGPITDELCHLARLHSLVLQGNKFSGSIPSCLGNLTSVRVLYLGL 460
            L+ LQ   L  N L G I  ELC L  L++L L GNK SGSIP+C  NLTS+R L+L  
Sbjct: 511 TLKHLQGLYLHGNDLDGSIPSELCDLRTLYNLELTGNKLSGSIPTCFSNLTSLRNLFLAS 570

Query: 461 NIFTSVLSSTIWNLKDILFIDVSSNFLDGPLSLDIGNLKVV-----------------IG 503
           N F S +SST+W LKDIL ++++SN+L G L  +I NL+ V                 IG
Sbjct: 571 NRFVSTISSTLWTLKDILQVNLASNYLTGSLPSEIENLRAVYMINISKNQLSGEIPISIG 630

Query: 504 -------------------------------LDFSRNNLSGDIPITIG------------ 520
                                          LD S NNLSG IP ++             
Sbjct: 631 GLQDLAQLYLSGNKLQGPIPQSVGDIKSLEFLDLSSNNLSGMIPKSLDNLLYLKYFNVSF 690

Query: 521 ---EGEIPRGGPFANLTAKSFMGNELLCGLPDLQVSPCKPNKPNTHKKSRKMLLLVIVLP 577
              +GEIP GG F+N +A+SF+GNE LCG   LQVSPCK +     +     ++L  VLP
Sbjct: 691 NYLQGEIPEGGSFSNFSAQSFIGNEALCGSARLQVSPCKDDNSRATETPGSKIVLRYVLP 750

Query: 578 LSTALIVVVTLTLKWKLIKCWKSRTGPSNDGINSPQAIRRFSYHELLRATDRFSENNLIG 637
                + V+   +  K   C +       D   +   IRR SYHEL  AT+ F E+N +G
Sbjct: 751 AIVFAVFVLAFVIMLKRY-CERKAKFSIEDDFLALTTIRRISYHELQLATNGFQESNFLG 809

Query: 638 IG-----------NGMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVKIISSS---- 682
           +G           +G  +A KVF+ Q ERA KSF+ ECEV + +RHRNLVKII+S     
Sbjct: 810 MGSFGSVYKGTLSDGTVIAAKVFNLQLERAFKSFDTECEVLRNLRHRNLVKIITSCSGPN 869

Query: 683 ----------------------------------------LEYLHFGHSIPIIHCDLKPS 702
                                                   LEYLH G++IP+ HCD+KPS
Sbjct: 870 FKALVLEFMPNWSLEKWLYSDDYFLNNLQRLNIMLDVASVLEYLHHGYTIPMAHCDIKPS 929

Query: 703 NVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFG 762
           NVLL+EDMVA ++DFGI+KLL GE+    QT TLATIGYMAPEYG++G VS RGDV S+G
Sbjct: 930 NVLLNEDMVAFLADFGISKLL-GEEGSVMQTMTLATIGYMAPEYGSEGIVSVRGDVYSYG 988

Query: 763 II 764
           ++
Sbjct: 989 VL 990

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359483198|ref|XP_002271405.2| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Vitis vinifera]

 Score =  567 bits (1461), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 384/981 (39%), Positives = 504/981 (51%), Gaps = 220/981 (22%)

Query: 11   QQALLALKAHISYDHTNLFARNWTSSTSVCIWIGITCDVNSHRVIGLNISSFNLQGTITP 70
            Q +LLALKAHI+ D  ++ A NW++ TS C WIG++C+    RVI L++S+  L+GTI P
Sbjct: 33   QSSLLALKAHITLDPHHVLAGNWSTKTSFCEWIGVSCNAQQQRVIALDLSNLGLRGTIPP 92

Query: 71   QLGNLSSLQTLDLS---------------------------------------------- 84
             LGNLS L +LDLS                                              
Sbjct: 93   DLGNLSFLVSLDLSSNNFHGPVPVEVGQLTSLLSMNLQYNLLSGQIPPSFGNLNRLQSLF 152

Query: 85   --HNKLSGNIPSSIFNMHTLKLLDFSDNQLFG------------------------SLSS 118
              +N  +G IP SI NM  L+ L    N L G                        ++ S
Sbjct: 153  LGNNSFTGTIPPSIGNMSMLETLGLGGNHLQGNIPEEIGKLSTMKILDIQSNQLVGAIPS 212

Query: 119  FIFNMSSMTTIDLSINRLSGELPANICK-------------------IPSTLSKCKQLEE 159
             IFN+SS+  I L+ N LSG+LP+++C                    IPS LSKC +L+ 
Sbjct: 213  AIFNISSLQEIALTYNSLSGDLPSSMCNHELSALRGIRLSANRFTGPIPSNLSKCGELQT 272

Query: 160  LNLGFNNLSGAIPKEIGNLTKLKEIISTITNSTVCEIPREIGNLPYLARLALATNNLVGV 219
            L L FN  +G IP+ I +LTKL  ++S   NS   E+P EIG+L  L  L +  N+L G 
Sbjct: 273  LYLSFNKFTGGIPRSIDSLTKLT-MLSLAANSLSGEVPCEIGSLCTLNVLNIEDNSLTGH 331

Query: 220  VPVTIFNMSALKEISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSITNSSKL 279
            +P  IFN+S++   SL  N+LSG+LP      LPN+E L L IN  SG IPSSI N+SKL
Sbjct: 332  IPFQIFNISSMVSGSLTRNNLSGNLPPNFGSYLPNLENLILEINWLSGIIPSSIGNASKL 391

Query: 280  SDLELGENLFSGFIPNTIGNLRNLEFGNIADNYLT--SSTPELSFLSSLTNCKKLKVLIV 337
              L+ G N+ +G IP+ +G+LR LE  N+  N L   S   ELSFL+SLTNCK+L++L +
Sbjct: 392  RSLDFGYNMLTGSIPHALGSLRFLERLNLGVNNLKGESYIQELSFLTSLTNCKRLRILYL 451

Query: 338  TGNPLDGILPKSIGNFSLSLETILMANCSISGNIPQVVGNLSNLLVLELGGNNLTGPIPV 397
            + NPL GILP SIGN S SL+      C + GNIP  +GNLSNL +L L  N+LTG IP 
Sbjct: 452  SFNPLIGILPISIGNLSTSLQRFEANTCKLKGNIPTEIGNLSNLYLLSLNNNDLTGTIPP 511

Query: 398  TFSQLQTLQAFDLTRNKLAGPITDELCHLARLHSLVLQGNKFSGSIPSCLGNLTSVRVLY 457
            +  QLQ LQ   L  NKL G I +++C L  L  L L  N+ SGSIP+CLG LT +R LY
Sbjct: 512  SIGQLQKLQGLYLPSNKLQGSIPNDICQLRNLGELFLTNNQLSGSIPACLGELTFLRHLY 571

Query: 458  LGLNIFTSVLSSTIWNLKDILFIDVSSNFLDGPLSLDIGNLKVVIGLDFSRNNLSGDIPI 517
            LG N   S + ST+W+L  IL +D+SSNFL G L  D+GNLKV++ +D SRN LSG+IP 
Sbjct: 572  LGSNKLNSTIPSTLWSLIHILSLDMSSNFLVGYLPSDMGNLKVLVKIDLSRNQLSGEIPS 631

Query: 518  TIGE---------------------------------------GEIPRG----------- 527
             IG                                        GEIP+            
Sbjct: 632  NIGGLQDLTSLSLAHNRFEGPILHSFSNLKSLEFMDLSDNALFGEIPKSLEGLVYLKYLD 691

Query: 528  -------------GPFANLTAKSFMGNELLCGLPDLQVSPCKPNKPNTHKKSRKMLLLVI 574
                         GPFAN +A+SFM N+ LCG P L++ PC+         +   LLL  
Sbjct: 692  VSFNGLYGEIPPEGPFANFSAESFMMNKALCGSPRLKLPPCRTG--TRWSTTISWLLLKY 749

Query: 575  VLPLSTALIVVVTLTLKWKLIKCWKSRTG-PSNDGINSPQAIRRFSYHELLRATDRFSEN 633
            +LP   + ++ + L   W   +C K     P+          RR SY E+ +AT+ FS  
Sbjct: 750  ILPAILSTLLFLALIFVWT--RCRKRNAVLPTQSESLLTATWRRISYQEIFQATNGFSAG 807

Query: 634  NLIGIG-----------NGMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVKIISS- 681
            NL+G G           +G   A+KVF+ Q E A KSF+ ECEV   IRHRNL+KI+SS 
Sbjct: 808  NLLGRGSLGSVYRGTLSDGKNAAIKVFNLQEEAAFKSFDAECEVMHHIRHRNLIKIVSSC 867

Query: 682  ---------------------------------------------SLEYLHFGHSIPIIH 696
                                                         ++EYLH G S P++H
Sbjct: 868  SNSYIDFKALVLEYVPNGSLERWLYSHNYCLDILQRLNIMIDVALAMEYLHHGCSTPVVH 927

Query: 697  CDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRG 756
            CDLKPSN+LLDED   H+ DFGIAKLL  E+ + ++TQTLATIGYMAP+Y + G V+T G
Sbjct: 928  CDLKPSNILLDEDFGGHVGDFGIAKLLREEESI-RETQTLATIGYMAPKYVSNGIVTTSG 986

Query: 757  DVCSFGIISGGKETRSMTVGE 777
            DV S+GI+     TR     E
Sbjct: 987  DVYSYGIVLMETFTRRRPTDE 1007

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147853795|emb|CAN81714.1| hypothetical protein VITISV_005816 [Vitis vinifera]

 Score =  556 bits (1434), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 359/888 (40%), Positives = 473/888 (53%), Gaps = 158/888 (17%)

Query: 56   GLNISSFNLQGTITPQLGNLSSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQLFGS 115
            GL++S     G I   +G+LS+L+ + L++N L+G IP  I N+  L  L      + G 
Sbjct: 267  GLSLSLNQFTGGIPQAIGSLSNLEEVYLAYNNLAGGIPREIGNLSNLNSLQLGSCGISGP 326

Query: 116  LSSFIFNMSSMTTIDLSINRLSGELPANICK------------------IPSTLSKCKQL 157
            +   IFN+SS+  IDL+ N L G LP +ICK                  +P+TLS C QL
Sbjct: 327  IPPEIFNISSLQMIDLTDNSLHGSLPMDICKHLHNLQGLYLSFNQLSGQLPTTLSLCGQL 386

Query: 158  EELNLGFNNLSGAIPKEIGNLTKLKEIISTITNSTVCEIPREIGNLPYLARLALATNNLV 217
              L+L  N  +G IP   GNLT L+++     N+    IP E+GNL  L  L L+ NNL 
Sbjct: 387  LSLSLWGNRFTGNIPPSFGNLTVLQDL-ELXENNIQGNIPNELGNLINLQNLKLSVNNLT 445

Query: 218  GVVPVTIFNMSALKEISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSITNSS 277
            G++P  IFN+S L+ + L  N  SGSLPS I   LP++E L +G N FSG IP SI+N S
Sbjct: 446  GIIPEAIFNISKLQTLXLAQNHFSGSLPSSIGTQLPDLEGLAIGXNEFSGIIPMSISNMS 505

Query: 278  KLSDLELGENLFSGFIPNTIGNLRNLEFGNIADNYLTS--STPELSFLSSLTNCKKLKVL 335
            +L+ L++  N F+G +P  +GNLR LEF N+  N LT   ST E+ FL+SLTNCK L+ L
Sbjct: 506  ELTVLDIWANFFTGDVPKDLGNLRRLEFLNLGFNQLTDEHSTSEVGFLTSLTNCKFLRRL 565

Query: 336  IVTGNPLDGILPKSIGNFSLSLETILMANCSISGNIPQVVGNLSNLLVLELGGNNLTGPI 395
             +  NPL GILP S+GN S+SLE+   + C   G IP  +GNL NL+ L L  N+LTG I
Sbjct: 566  WIEDNPLKGILPNSLGNLSISLESFDASACQFKGTIPTGIGNLINLIDLRLNDNDLTGLI 625

Query: 396  PVTFSQLQTLQAFDLTRNKLAGPITDELCHLARLHSLVLQGNKFSGSIPSCLGNLTSVRV 455
            P++F  LQ LQ F ++ N++ G I   LCHL  L  L L  NK SG+IP C GNLT++R 
Sbjct: 626  PISFGHLQKLQWFAISGNRIHGSIPSVLCHLRNLGYLDLSSNKLSGTIPGCFGNLTALRN 685

Query: 456  LYLGLNIFTSVLSSTIWNLKDILFIDVSSNFLDGPLSLDIGNLKVVIGLDFSRN------ 509
            + L  N   S + S++W L+D+L +++SSNFL+  L L++GN+K ++ LD S+N      
Sbjct: 686  ISLHSNGLASEIPSSLWTLRDLLVLNLSSNFLNCQLPLEVGNMKSLLVLDLSKNQFSGNI 745

Query: 510  ------------------------------------------NLSGDIPITIG------- 520
                                                      N SG IP ++        
Sbjct: 746  PSTISLLQNLLQLYLSHNKLQGHMPPNFGALVSLEYLDLSGNNFSGTIPTSLEALKYLKY 805

Query: 521  --------EGEIPRGGPFANLTAKSFMGNELLCGLPDLQVSPCKPNKPNTHKKSRKMLLL 572
                    +GEIP  GPFAN TA+SF+ N  LCG P  QV  C+ +     +++ K LLL
Sbjct: 806  LNVSFNKLQGEIPNRGPFANFTAESFISNLALCGAPRFQVMACEKDA----RRNTKSLLL 861

Query: 573  VIVLPLSTAL---IVVVTLTLKWKLIKCWKSRTGPSNDGINS----PQAIRRFSYHELLR 625
              ++PLS +L   I+VV  TL       WK R   S   +      P+  R  S+ ELL 
Sbjct: 862  KCIVPLSVSLSTMILVVLFTL-------WKRRQTESESPVQVDLLLPRMHRLISHQELLY 914

Query: 626  ATDRFSENNLIGIG-----------NGMEVAVKVFHQQYERALKSFEDECEVRKRIRHRN 674
            AT  F E NLIG G           +G+ VAVKVF+ +   A KSFE ECEV + IRHRN
Sbjct: 915  ATSYFGEENLIGKGSLGMVYKGVLSDGLIVAVKVFNLELHGAFKSFEVECEVMRNIRHRN 974

Query: 675  LVKIIS--------------------------------------------SSLEYLHFGH 690
            L KIIS                                            S LEYLH  +
Sbjct: 975  LAKIISSCSNLDFKALVLEYMPNESLEKWLYSHNYCLDFIQRLKIMIDVASGLEYLHHDY 1034

Query: 691  SIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKG 750
            S P++HCDLKPSNVLLD+DMVAHISDFGIAKLL G  +  K+T+TL TIGYMAPEYG++G
Sbjct: 1035 SNPVVHCDLKPSNVLLDDDMVAHISDFGIAKLLMGS-EFMKRTKTLGTIGYMAPEYGSEG 1093

Query: 751  RVSTRGDVCSFGIISGGKETRSMTVGETCTPVRESKYEVHPATTTIME 798
             VST+ D  S+GII      R     E        K  V  +   IME
Sbjct: 1094 IVSTKCDTYSYGIILMEIFVRKKPTDEMFVEELTLKSWVESSANNIME 1141

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147852480|emb|CAN78527.1| hypothetical protein VITISV_039533 [Vitis vinifera]

 Score =  555 bits (1430), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 343/850 (40%), Positives = 472/850 (55%), Gaps = 145/850 (17%)

Query: 53   RVIGLNISSFNLQGTITPQLGNLSSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQL 112
            RV+ L+I+ F   G I   +G+LS L+ L L +NKL+G IP  I N+  L +L    N +
Sbjct: 295  RVLSLSINRFT--GGIPQAIGSLSDLEELYLGYNKLTGGIPREIGNLSNLNILQLGSNGI 352

Query: 113  FGSLSSFIFNMSSMTTIDLSINRLSGELPANICK------------------IPSTLSKC 154
             G + + IFN+SS+  I  S N LSG LP +ICK                  +P+TLS C
Sbjct: 353  SGPIPAEIFNISSLQGIGFSNNSLSGSLPMDICKHLPNLQWLDLALNHLSGQLPTTLSLC 412

Query: 155  KQLEELNLGFNNLSGAIPKEIGNLTKLKEIISTITNSTVCEIPREIGNLPYLARLALATN 214
            ++L  L+L FN   G+IP+EIGNL+KL E I   +NS V  IP   GNL  L  L L  N
Sbjct: 413  RELLVLSLSFNKFRGSIPREIGNLSKL-EWIDLSSNSLVGSIPTSFGNLMALKFLNLGIN 471

Query: 215  NLVGVVPVTIFNMSALKEISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSIT 274
            NL G VP  IFN+S L+ +++  N LSGSLPS I   LP++E L +G N FSG IP SI+
Sbjct: 472  NLTGTVPEAIFNISKLQSLAMAINHLSGSLPSSIGTWLPDLEGLFIGGNEFSGIIPVSIS 531

Query: 275  NSSKLSDLELGENLFSGFIPNTIGNLRNLEFGNIADNYLTSS--TPELSFLSSLTNCKKL 332
            N SKL+ L++  N F G +P  +GNL  LE  N+A N  T+     E+SFL+SLTNCK L
Sbjct: 532  NMSKLTQLDVSRNSFIGNVPKDLGNLTKLEVLNLAGNQFTNEHLASEVSFLTSLTNCKFL 591

Query: 333  KVLIVTGNPLDGILPKSIGNFSLSLETILMANCSISGNIPQVVGNLSNLLVLELGGNNLT 392
            K L +  NP  G LP S+GN  ++LE+ + + C   G IP  +GNL+NL+ L+LG N+LT
Sbjct: 592  KNLWIGNNPFKGTLPNSLGNLPIALESFIASACQFRGTIPTGIGNLTNLIWLDLGANDLT 651

Query: 393  GPIPVTFSQLQTLQAFDLTRNKLAGPITDELCHLARLHSLVLQGNKFSGSIPSCLGNLTS 452
            G IP    +L+ LQ   +  N+L G I ++LCHL  L  L L  NK SGSIPSC G+L +
Sbjct: 652  GSIPTILGRLKKLQRLHIAGNRLRGSIPNDLCHLKNLGYLHLSSNKLSGSIPSCFGDLPA 711

Query: 453  VRVLYLGLNIFTSVLSSTIWNLKDILFIDVSSNFLDGPLSLDIGNLKVVI---------- 502
            ++ L+L  N+    + +++W+L+D+L +++SSNFL G L  ++GN+K +           
Sbjct: 712  LQELFLDSNVLAFNIPTSLWSLRDLLVLNLSSNFLTGNLPPEVGNMKSITTLDLSKNLVS 771

Query: 503  --------------------------------------GLDFSRNNLSGDIPITIG---- 520
                                                   LD S+NNLSG IP ++     
Sbjct: 772  GYIPRRMGEQQNLAKLSLSQNRLQGPIPVEFGDLVSLESLDLSQNNLSGTIPKSLEALIY 831

Query: 521  -----------EGEIPRGGPFANLTAKSFMGNELLCGLPDLQVSPCKPNKPNTHKKSRKM 569
                       +GEIP GGPF N TA+SFM NE LCG P  QV  C  N      K++  
Sbjct: 832  LKYLNVSSNKLQGEIPNGGPFVNFTAESFMFNEALCGAPHFQVMACDKNNRTQSWKTKSF 891

Query: 570  LLLVIVLPLSTALIVVVTLTLKWKLIKCWKSRTGPSNDGINSPQAIRRFSYHELLRATDR 629
            +L  I+LP+ + + +VV + L W  I+   +   P+      P    + S+  LL AT+ 
Sbjct: 892  ILKYILLPVGSTITLVVFIVL-W--IRRRDNMEIPTPIDSWLPGTHEKISHQRLLYATND 948

Query: 630  FSENNLIGIG-----------NGMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVKI 678
            F E+NLIG G           NG+ VA+KVF+ +++ AL+SF+ ECEV + IRHRNLV+I
Sbjct: 949  FGEDNLIGKGSQGMVYKGVLSNGLIVAIKVFNLEFQGALRSFDSECEVMQGIRHRNLVRI 1008

Query: 679  I--------------------------------------------SSSLEYLHFGHSIPI 694
            I                                            +S+LEYLH   S  +
Sbjct: 1009 ITCCSNLDFKALVLKYMPNGSLEKWLYSHNYFLDLIQRLNIMIDVASALEYLHHDCSSLV 1068

Query: 695  IHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVST 754
            +HCDLKPSNVLLD+DMVAH++DFGI KLL+  + + +QT+TL TIGYMAPE+G+ G VST
Sbjct: 1069 VHCDLKPSNVLLDDDMVAHVADFGITKLLTKTESM-QQTKTLGTIGYMAPEHGSDGIVST 1127

Query: 755  RGDVCSFGII 764
            + DV S+GI+
Sbjct: 1128 KSDVYSYGIL 1137

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359483677|ref|XP_003633000.1| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2-like [Vitis vinifera]

 Score =  553 bits (1425), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 346/884 (39%), Positives = 486/884 (54%), Gaps = 145/884 (16%)

Query: 53   RVIGLNISSFNLQGTITPQLGNLSSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQL 112
            RV+ L+ + F   G I   +G+LS+L+ L LSHNKL+G IP  I N+  L +L  S N +
Sbjct: 295  RVLSLSFNQFT--GGIPQAIGSLSNLEELYLSHNKLTGGIPREIGNLSNLNILQLSSNGI 352

Query: 113  FGSLSSFIFNMSSMTTIDLSINRLSGELPANICK------------------IPSTLSKC 154
             G + + IFN+SS+  I  + N LSG LP +ICK                  +P+TLS C
Sbjct: 353  SGPIPAEIFNVSSLQVIAFTDNSLSGSLPKDICKHLPNLQGLSLSQNHLSGQLPTTLSLC 412

Query: 155  KQLEELNLGFNNLSGAIPKEIGNLTKLKEIISTITNSTVCEIPREIGNLPYLARLALATN 214
             +L  L+L FN   G+IPKEIGNL+KL++I    TNS +  IP   GNL  L  L L  N
Sbjct: 413  GELLFLSLSFNKFRGSIPKEIGNLSKLEKIYLG-TNSLIGSIPTSFGNLKALKFLNLGIN 471

Query: 215  NLVGVVPVTIFNMSALKEISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSIT 274
            NL G VP  IFN+S L+ ++++ N LSGSLPS I   L ++E L +  N FSG IP SI+
Sbjct: 472  NLTGTVPEAIFNISKLQSLAMVKNHLSGSLPSSIGTWLSDLEGLFIAGNEFSGIIPMSIS 531

Query: 275  NSSKLSDLELGENLFSGFIPNTIGNLRNLEFGNIADNYLTSS--TPELSFLSSLTNCKKL 332
            N SKL+ L L  N F+G +P  +GNL  L+  ++A N LT      E+ FL+SLTNCK L
Sbjct: 532  NMSKLTVLGLSANSFTGNVPKDLGNLTKLKVLDLAGNQLTDEHVASEVGFLTSLTNCKFL 591

Query: 333  KVLIVTGNPLDGILPKSIGNFSLSLETILMANCSISGNIPQVVGNLSNLLVLELGGNNLT 392
            K L +  NP  G LP S+GN  ++LE+ + + C   G IP  +GNL+NL+ L+LG N+LT
Sbjct: 592  KNLWIGNNPFKGTLPNSLGNLPIALESFIASACQFRGTIPTRIGNLTNLIWLDLGANDLT 651

Query: 393  GPIPVTFSQLQTLQAFDLTRNKLAGPITDELCHLARLHSLVLQGNKFSGSIPSCLGNLTS 452
            G IP T  +L+ LQ   +  N+L G I ++LCHL  L  L L  NK SGSIPSC G+L +
Sbjct: 652  GSIPTTLGRLKKLQKLHIVGNRLRGSIPNDLCHLKNLGYLHLSSNKLSGSIPSCFGDLPA 711

Query: 453  VRVLYLGLNIFTSVLSSTIWNLKDILFIDVSSNFLDGPLSLDIGNLKVVI---------- 502
            ++ L+L  N+    + +++W+L+D+L +++SSNFL G L  ++GN+K +           
Sbjct: 712  LQELFLDSNVLAFNIPTSLWSLRDLLVLNLSSNFLTGNLPPEVGNMKSITTLDLSKNLVS 771

Query: 503  --------------------------------------GLDFSRNNLSGDIPITIG---- 520
                                                   LD S+NNLSG IP ++     
Sbjct: 772  GHIPRKMGEQQNLAKLSLSQNKLQGPIPIEFGDLVSLESLDLSQNNLSGTIPKSLEALIY 831

Query: 521  -----------EGEIPRGGPFANLTAKSFMGNELLCGLPDLQVSPCKPNKPNTHKKSRKM 569
                       +GEIP GGPF N TA+SFM NE LCG P  QV  C  N      K++  
Sbjct: 832  LKYLNVSLNKLQGEIPNGGPFINFTAESFMFNEALCGAPHFQVMACDKNNRTQSWKTKSF 891

Query: 570  LLLVIVLPLSTALIVVVTLTLKWKLIKCWKSRTGPSNDGINSPQAIRRFSYHELLRATDR 629
            +L  I+LP+ + + +VV + L W  I+   +   P+      P    + S+ +LL AT+ 
Sbjct: 892  ILKYILLPVGSIVTLVVFIVL-W--IRRRDNMEIPTPIDSWLPGTHEKISHQQLLYATND 948

Query: 630  FSENNLIGIG-----------NGMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVKI 678
            F E+NLIG G           NG+ VA+KVF+ +++ AL+SF+ ECEV + IRHRNLV+I
Sbjct: 949  FGEDNLIGKGSQGMVYKGVLSNGLTVAIKVFNLEFQGALRSFDSECEVMQGIRHRNLVRI 1008

Query: 679  I--------------------------------------------SSSLEYLHFGHSIPI 694
            I                                            +S+LEYLH   S  +
Sbjct: 1009 ITCCSNLDFKALVLEYMPNGSLEKWLYSHNYFLDLIQRLNIMIDVASALEYLHHDCSSLV 1068

Query: 695  IHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVST 754
            +HCDLKP+NVLLD+DMVAH++DFGI KLL+  + + +QT+TL TIGYMAPE+G+ G VST
Sbjct: 1069 VHCDLKPNNVLLDDDMVAHVADFGITKLLTKTESM-QQTKTLGTIGYMAPEHGSDGIVST 1127

Query: 755  RGDVCSFGIISGGKETRSMTVGETCTPVRESKYEVHPATTTIME 798
            + DV S+GI+     +R   + E  T     K  V   + ++++
Sbjct: 1128 KSDVYSYGILLMEVFSRKKPMDEMFTGDLTLKTWVESLSNSVIQ 1171

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147776333|emb|CAN72034.1| hypothetical protein VITISV_000078 [Vitis vinifera]

 Score =  551 bits (1420), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 344/852 (40%), Positives = 465/852 (54%), Gaps = 160/852 (18%)

Query: 60   SSFN-LQGTITPQLGNLSSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQLFGSLSS 118
            SSFN   G I   +G+L +L+ L L+ NKL+G IP  I N+  L +L    N + G + +
Sbjct: 275  SSFNQFTGGIPQAIGSLCNLEELYLAFNKLTGGIPREIGNLSNLNILQLGSNGISGPIPA 334

Query: 119  FIFNMSSMTTIDLSINRLSGELPANICK------------------IPSTLSKCKQLEEL 160
             IFN+SS+  ID + N LSG LP  ICK                  +P+TLS C +L  L
Sbjct: 335  EIFNISSLQVIDFTNNSLSGSLPMGICKHLPNLQGLYLAQNHLSGQLPTTLSLCGELLFL 394

Query: 161  NLGFNNLSGAIPKEIGNLTKLKEIISTITNSTVCEIPREIGNLPYLARLALATNNLVGVV 220
            +L FN   G+IP+EIGNL+KL E I   +NS V  IP   GNL  L  L L  N L G V
Sbjct: 395  SLSFNKFRGSIPREIGNLSKL-EHIDLRSNSLVGSIPTSFGNLKALKFLNLGINFLTGTV 453

Query: 221  PVTIFNMSALKEISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSITNSSKLS 280
            P  IFN+S L+ ++L+ N LSGSLPS I   LP++E L +G N FSGTIP SI+N SKL+
Sbjct: 454  PEAIFNISELQNLALVQNHLSGSLPSSIGTWLPDLEGLYIGANEFSGTIPMSISNMSKLT 513

Query: 281  DLELGENLFSGFIPNTIGNLRNLEFGNIADNYLTSS--TPELSFLSSLTNCKKLKVLIVT 338
             L L +N F+G +P  + NL  L+F N+A N LT       + FL+SLTNCK L+ L + 
Sbjct: 514  VLSLSDNSFTGNVPKDLCNLTKLKFLNLAHNQLTDEHLASGVGFLTSLTNCKFLRYLWIG 573

Query: 339  GNPLDGILPKSIGNFSLSLETILMANCSISGNIPQVVGNLSNLLVLELGGNNLTGPIPVT 398
             NPL G LP S+GN  ++LE+     C   G IP  +GNL+NL+ L+LG N+LTG IP T
Sbjct: 574  YNPLKGTLPNSLGNLPIALESFTAYACQFRGTIPTGIGNLTNLIWLDLGANDLTGSIPTT 633

Query: 399  FSQLQTLQAFDLTRNKLAGPITDELCHLARLHSLVLQGNKFSGSIPSCLGNLTSVRVLYL 458
              +LQ LQ   +  N++ G I ++LCHL  L  L L  NK SGS PSC G+L ++R L+L
Sbjct: 634  LGRLQKLQRLHIAGNRIRGSIPNDLCHLKNLGYLGLSSNKLSGSTPSCFGDLLALRELFL 693

Query: 459  GLNIFTSVLSSTIWNLKDILFIDVSSNFLDGPLSLDIGNLKVVIGLDFSR---------- 508
              N     + +++W+L+D+L +++SSNFL G L  ++GN+K +  LD S+          
Sbjct: 694  DSNALAFNIPTSLWSLRDLLVLNLSSNFLTGNLPPEVGNMKSITTLDLSKNLVSGYIPSR 753

Query: 509  --------------------------------------NNLSGDIPITIG---------- 520
                                                  NNLSG IP ++           
Sbjct: 754  MGKLQYLITLSLSQNRLQGPIXVEFGDLVSLESLDLSHNNLSGTIPKSLEALIYLKYLNV 813

Query: 521  -----EGEIPRGGPFANLTAKSFMGNELLCGLPDLQVSPCKPNKPNTHKKSRKMLLLVIV 575
                 +GEIP GGPF   TA+SFM NE LCG P  QV  C  N      K++  +L  I+
Sbjct: 814  SFNKLQGEIPNGGPFVKFTAESFMFNEALCGAPHFQVMACDKNNRTQSWKTKSFILKYIL 873

Query: 576  LPLSTALIVVVTLTLKWKLIKCWKSRTGPSNDGINSPQAI--------RRFSYHELLRAT 627
            LP+ + + +VV + L       W  R     D +  P  I         + S+ +LL AT
Sbjct: 874  LPVGSTVTLVVFIVL-------WIRR----RDNMEIPTPIDSWLLGTHEKISHQQLLYAT 922

Query: 628  DRFSENNLIGIG-----------NGMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLV 676
            + F E+NLIG G           NG+ VA+KVF+ +++ AL+SF+ ECEV + IRHRNLV
Sbjct: 923  NDFGEDNLIGKGSQGMVYKGVLSNGLNVAIKVFNLEFQGALRSFDSECEVMQGIRHRNLV 982

Query: 677  KII--------------------------------------------SSSLEYLHFGHSI 692
            +II                                            +S+LEYLH   S 
Sbjct: 983  RIITCCSNLDFKALVLEYMPNGSLEKWLYSHNYFLDLIQRLNIMIDVASALEYLHHDCSS 1042

Query: 693  PIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRV 752
             ++HCDLKPSNVLLD+DMVAH++DFGIAKLL+ E +  +QT+TL TIGYMAPE+G+ G V
Sbjct: 1043 LVVHCDLKPSNVLLDDDMVAHVADFGIAKLLT-ETESMQQTKTLGTIGYMAPEHGSAGIV 1101

Query: 753  STRGDVCSFGII 764
            ST+ DV S+GI+
Sbjct: 1102 STKSDVYSYGIL 1113

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147769371|emb|CAN72496.1| hypothetical protein VITISV_010511 [Vitis vinifera]

 Score =  550 bits (1416), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 340/850 (40%), Positives = 473/850 (55%), Gaps = 145/850 (17%)

Query: 53   RVIGLNISSFNLQGTITPQLGNLSSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQL 112
            RV+ L+ + F   G I   +G+LS+L+ L LS+NKL+G IP  I N+  L +L    N +
Sbjct: 307  RVLSLSFNQFT--GGIPQAIGSLSNLEGLYLSYNKLTGGIPREIGNLSNLNILQLGSNGI 364

Query: 113  FGSLSSFIFNMSSMTTIDLSINRLSGELPANICK------------------IPSTLSKC 154
             G + + IFN+SS+  ID S N LSG LP +ICK                  +P+TLS C
Sbjct: 365  SGPIPAEIFNISSLQIIDFSNNSLSGSLPMDICKHLPNLQGLYLLQNHLSGQLPTTLSLC 424

Query: 155  KQLEELNLGFNNLSGAIPKEIGNLTKLKEIISTITNSTVCEIPREIGNLPYLARLALATN 214
             +L  L+L  N   G+IP+EIGNL+KL++I S  +NS V  IP   GNL  L  L L  N
Sbjct: 425  GELLYLSLAVNKFRGSIPREIGNLSKLEDI-SLRSNSLVGSIPTSFGNLMALKYLDLGMN 483

Query: 215  NLVGVVPVTIFNMSALKEISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSIT 274
             L G VP  IFN+S L+ + L+ N LSGSLP  I   LP++E L +G N FSGTIP SI+
Sbjct: 484  FLTGTVPEAIFNISELQILVLVQNHLSGSLPPSIGTWLPDLEGLYIGSNKFSGTIPMSIS 543

Query: 275  NSSKLSDLELGENLFSGFIPNTIGNLRNLEFGNIADNYLTSS--TPELSFLSSLTNCKKL 332
            N SKL  L++ +N F+G +P  +GNL  LE  N+A N LT+      + FL+SLTNCK L
Sbjct: 544  NMSKLIQLQVWDNSFTGNVPKDLGNLTKLEVLNLAANQLTNEHLASGVGFLTSLTNCKFL 603

Query: 333  KVLIVTGNPLDGILPKSIGNFSLSLETILMANCSISGNIPQVVGNLSNLLVLELGGNNLT 392
            + L +  NP  G LP S+GN  ++LE+   + C   G IP  +GNL+NL+ L+LG N+LT
Sbjct: 604  RHLWIDDNPFKGTLPNSLGNLPIALESFTASACQFRGTIPTGIGNLTNLIELDLGANDLT 663

Query: 393  GPIPVTFSQLQTLQAFDLTRNKLAGPITDELCHLARLHSLVLQGNKFSGSIPSCLGNLTS 452
              IP T  +LQ LQ   +  N++ G I ++LCHL  L  L L  NK SGSIPSC G+L +
Sbjct: 664  RSIPTTLGRLQKLQRLHIAGNRIRGSIPNDLCHLKNLGYLHLXSNKLSGSIPSCFGDLPA 723

Query: 453  VRVLYLGLNIFTSVLSSTIWNLKDILFIDVSSNFLDGPLSLDIGNLKVVI---------- 502
            ++ L+L  N+    + +++W+L+D+L +++SSNFL G L  ++GN+K +           
Sbjct: 724  LQELFLDSNVLAFNIPTSLWSLRDLLVLNLSSNFLTGNLPPEVGNMKSITTLDLSKNLVS 783

Query: 503  --------------------------------------GLDFSRNNLSGDIPITIG---- 520
                                                   LD S+NNLSG IP ++     
Sbjct: 784  GYIPRRMGEQQNLAKLSLSQNRLQGPIPXEFGDLVSLESLDLSQNNLSGTIPKSLEALIY 843

Query: 521  -----------EGEIPRGGPFANLTAKSFMGNELLCGLPDLQVSPCKPNKPNTHKKSRKM 569
                       +GEIP GGPF N TA+SFM NE LCG P  QV  C  N      K++  
Sbjct: 844  LKYLNVSSNKLQGEIPNGGPFXNFTAESFMFNEALCGAPHFQVMACDKNNRTQSWKTKSF 903

Query: 570  LLLVIVLPLSTALIVVVTLTLKWKLIKCWKSRTGPSNDGINSPQAIRRFSYHELLRATDR 629
            +L  I+LP+ + + +VV + L W   +       P +  +  P    + S+ +LL AT+ 
Sbjct: 904  ILKYILLPVGSTITLVVFIVL-WIRRRDNMEIXTPIDSWL--PGTHEKISHQQLLYATND 960

Query: 630  FSENNLIGIG-----------NGMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVKI 678
            F E+NLIG G           NG+ VA+KVF+ +++ AL+SF+ ECEV + IRHRNLV+I
Sbjct: 961  FGEDNLIGKGSQGMVYKGVLSNGLIVAIKVFNLEFQGALRSFDSECEVMQGIRHRNLVRI 1020

Query: 679  I--------------------------------------------SSSLEYLHFGHSIPI 694
            I                                            +S+LEYLH   S  +
Sbjct: 1021 ITCCSNLDFKALVLKYMPNGSLEKWLYSHNYFLDLIQRLNIMIDVASALEYLHHDCSSLV 1080

Query: 695  IHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVST 754
            +HCDLKPSNVLLD+BMVAH++DFGIAKLL+  + + +QT+TL TIGYMAPE+G+ G VST
Sbjct: 1081 VHCDLKPSNVLLDDBMVAHVTDFGIAKLLTKTESM-QQTKTLGTIGYMAPEHGSDGIVST 1139

Query: 755  RGDVCSFGII 764
            + DV S+GI+
Sbjct: 1140 KSDVYSYGIL 1149

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359485451|ref|XP_002276944.2| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2-like [Vitis vinifera]

 Score =  546 bits (1407), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 339/826 (41%), Positives = 469/826 (56%), Gaps = 139/826 (16%)

Query: 63   NLQGTITPQLGNLSSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQLFGSLSSFIF- 121
            NL G I  ++GNLS+L  LD   + +SG IP  IFN+ +L++ D +DN L GSL   I+ 
Sbjct: 552  NLVGGIPREIGNLSNLNILDFGSSGISGPIPPEIFNISSLQIFDLTDNSLLGSLPMDIYK 611

Query: 122  NMSSMTTIDLSINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEIGNLTKL 181
            ++ ++  + LS N+LSG+LP       STLS C QL+ L+L  N  +G IP   GNLT L
Sbjct: 612  HLPNLQELYLSWNKLSGQLP-------STLSLCGQLQSLSLWGNRFTGNIPPSFGNLTAL 664

Query: 182  KEIISTITNSTVCEIPREIGNLPYLARLALATNNLVGVVPVTIFNMSALKEISLLNNSLS 241
            +++     N+    IP E+GNL  L  L L+ NNL G++P  IFN+S L+ +SL  N  S
Sbjct: 665  QDL-ELGDNNIQGNIPNELGNLINLQNLKLSENNLTGIIPEAIFNISKLQSLSLAQNHFS 723

Query: 242  GSLPSRIDLSLPNVETLNLGINSFSGTIPSSITNSSKLSDLELGENLFSGFIPNTIGNLR 301
            GSLPS +   LP++E L +G N FSG IP SI+N S+L++L++ +N F+G +P  +GNLR
Sbjct: 724  GSLPSSLGTQLPDLEGLAIGRNEFSGIIPMSISNMSELTELDIWDNFFTGDVPKDLGNLR 783

Query: 302  NLEFGNIADNYLTS--STPELSFLSSLTNCKKLKVLIVTGNPLDGILPKSIGNFSLSLET 359
             LEF N+  N LT   S  E+ FL+SLTNC  L+ L +  NPL GILP S+GN S+SLE+
Sbjct: 784  RLEFLNLGSNQLTDEHSASEVGFLTSLTNCNFLRTLWIEDNPLKGILPNSLGNLSISLES 843

Query: 360  ILMANCSISGNIPQVVGNLSNLLVLELGGNNLTGPIPVTFSQLQTLQAFDLTRNKLAGPI 419
               + C   G IP  +GNL++L+ LELG N+LTG IP T  QL+ LQ   +  N+L G I
Sbjct: 844  FDASACQFRGTIPTGIGNLTSLISLELGDNDLTGLIPTTLGQLKKLQELGIAGNRLRGSI 903

Query: 420  TDELCHLARLHSLVLQGNKFSGSIPSCLGNLTSVRVLYLGLNIFTSVLSSTIWNLKDILF 479
             ++LC L  L  L L  N+ +GSIPSCLG L  +R LYL  N   S +  ++W L+ +L 
Sbjct: 904  PNDLCRLKNLGYLFLSSNQLTGSIPSCLGYLPPLRELYLHSNALASNIPPSLWTLRGLLV 963

Query: 480  IDVSSNFLDGPLSLDIGNLKVV-----------------IG------------------- 503
            +++SSNFL G L  ++GN+K +                 +G                   
Sbjct: 964  LNLSSNFLTGHLPPEVGNIKSIRTLDLSKNQVSGHIPRTLGELQNLEDLSLSQNRLQGPI 1023

Query: 504  ------------LDFSRNNLSGDIPITIG---------------EGEIPRGGPFANLTAK 536
                        LD S+NNLSG IP ++                +GEIP GGPF N TA+
Sbjct: 1024 PLEFGDLLSLKFLDLSQNNLSGVIPKSLKALTYLKYLNVSFNKLQGEIPDGGPFMNFTAE 1083

Query: 537  SFMGNELLCGLPDLQVSPCKPNKPNTHKKSR-KMLLLVIVLPLSTALIVVVTLTLKWKLI 595
            SF+ NE LCG P  QV  C  +K    +  R K+ +L  +LP   ++I +V   + W  I
Sbjct: 1084 SFIFNEALCGAPHFQVIAC--DKSTRSRSWRTKLFILKYILPPVISIITLVVFLVLW--I 1139

Query: 596  KCWKSRTGPSNDGINSPQAIRRFSYHELLRATDRFSENNLIGIG-----------NGMEV 644
            +  K+   P+      P +  + S+ +LL AT+ F E+NLIG G           NG+ V
Sbjct: 1140 RRRKNLEVPTPIDSWLPGSHEKISHQQLLYATNYFGEDNLIGKGSLSMVYKGVLSNGLTV 1199

Query: 645  AVKVFHQQYERALKSFEDECEVRKRIRHRNLVKII------------------------- 679
            AVKVF+ +++ A +SF+ ECEV + IRHRNLVKII                         
Sbjct: 1200 AVKVFNLEFQGAFRSFDSECEVMQSIRHRNLVKIITCCSNLDFKALVLEYMPKGSLDKWL 1259

Query: 680  -------------------SSSLEYLHFGHSIP--IIHCDLKPSNVLLDEDMVAHISDFG 718
                               +S+LEYLH  H  P  ++HCDLKP+N+LLD+DMVAH+ DFG
Sbjct: 1260 YSHNYFLDLIQRLNIMIDVASALEYLH--HDCPSLVVHCDLKPNNILLDDDMVAHVGDFG 1317

Query: 719  IAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
            IA+LL+ E +  +QT+TL TIGYMAPEYG+ G VST+GDV S+GI+
Sbjct: 1318 IARLLT-ETESMQQTKTLGTIGYMAPEYGSDGIVSTKGDVFSYGIM 1362

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224116832|ref|XP_002317405.1| predicted protein [Populus trichocarpa] gi|222860470|gb|EEE98017.1| predicted protein [Populus trichocarpa]

 Score =  545 bits (1403), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 358/890 (40%), Positives = 467/890 (52%), Gaps = 174/890 (19%)

Query: 57  LNISSFNLQGTITPQLGNLSSLQTLDLSHNKLSGNIPSSIFNM----------------- 99
           LN+    ++G I+ ++ NLS+L+ LDL HN  SG I   +FNM                 
Sbjct: 93  LNLEGNFIEGNISEEIRNLSNLKILDLGHNHFSGVISPILFNMPSLRLINLRANSLSGIL 152

Query: 100 ----------HTLKLLDFSDNQLFGSLSSFIFNMSSMTTIDLSINRLSGELPANIC---- 145
                      TL++L+   NQL G + S +   + +  +DL  NR +G +P  IC    
Sbjct: 153 QVVMIMSNIPSTLEVLNLGYNQLHGRIPSNLHKCTELRVLDLESNRFTGSIPKEICTLTK 212

Query: 146 -------------KIPSTLSKCKQLEELNLGFNNLSGAIPKEIGNLTKLKEIISTITNST 192
                        +IP  +++   LE+L L  N L+G IP+EIGN T L EI     N+ 
Sbjct: 213 LKELYLGKNNLTGQIPGEIARLVSLEKLGLEVNGLNGNIPREIGNCTYLMEI-HVENNNL 271

Query: 193 VCEIPREIGNLPYLARLALATNNLVGVVPVTIFNMSALKEISLLNNSLSGSLPSRIDLSL 252
              IP E+GNL  L  L L  NN+ G +P T FN S L+ +++  N LSG LPS   L L
Sbjct: 272 TGVIPNEMGNLHTLQELDLGFNNITGSIPSTFFNFSILRRVNMAYNYLSGHLPSNTGLGL 331

Query: 253 PNVETLNLGINSFSGTIPSSITNSSKLSDLELGENLFSGFIPNTIGNLRNLEFGNIADNY 312
           PN+E L L  N  SG IP SI N+SKL  L+L  N FSG IP+ +GNLRNL+  N+A+N 
Sbjct: 332 PNLEELYLEKNELSGPIPDSIGNASKLIVLDLSYNSFSGRIPDLLGNLRNLQKLNLAENI 391

Query: 313 LTSSTPELSFLSSLT--NCKKLKVLIVTGNPLDGILPKSIGNFSLSLETILMANCSISGN 370
           LTS +         +  NC+ L  L   GNPL G LP SIGN S SLE +   +C I GN
Sbjct: 392 LTSKSLRSELSFLSSLSNCRSLAYLRFNGNPLRGRLPVSIGNLSASLEELYAFDCRIIGN 451

Query: 371 IPQVVGNLSNLLVLELGGNNLTGPIPVTFSQLQTLQAFDLTRNKLAGPITDELCHLARLH 430
           IP+ +GNLSNL+ L L  N LTG IP    +L+ LQ F L  NKL G I +E+CHL RL 
Sbjct: 452 IPRGIGNLSNLIGLILQQNELTGAIPSEIGRLKHLQDFSLASNKLQGHIPNEICHLERLS 511

Query: 431 SLVLQGNKFSGSIPSCLGNLTSVRVLYLGLNIFTSVLSSTIWNLKDILFIDVSSNFLDGP 490
            L L  N FSGS+P+CL N+TS+R LYLG N FTS+  +T W+LKD+L I++S N L G 
Sbjct: 512 YLYLLENGFSGSLPACLSNITSLRELYLGSNRFTSI-PTTFWSLKDLLQINLSFNSLTGT 570

Query: 491 LSLDIGNLKVVIGLDFS------------------------------------------- 507
           L L+IGNLKVV  +DFS                                           
Sbjct: 571 LPLEIGNLKVVTVIDFSSNQLSGDIPTSIADLQNLAHFSLSDNRMQGPIPSSFGDLVSLE 630

Query: 508 -----RNNLSGDIPITIG---------------EGEIPRGGPFANLTAKSFMGNELLCGL 547
                RN+LSG IP ++                +GEI  GGPFAN + +SFM NE LCG 
Sbjct: 631 FLDLSRNSLSGAIPKSLEKLVHLKTFNVSFNRLQGEILDGGPFANFSFRSFMDNEALCGP 690

Query: 548 PDLQVSPCKPNKPNTHKKSRKMLLLVIVLPLSTALIVVVTLTLKWKLIKCWKSRTGPSND 607
             +QV PCK    +TH++S++    VI   +     +++ L L   + +    R   + +
Sbjct: 691 IRMQVPPCK--SISTHRQSKRPREFVIRYIVPAIAFIILVLALAVIIFRRSHKRKLSTQE 748

Query: 608 GINSPQAIRRFSYHELLRATDRFSENNLIGIG-----------NGMEVAVKVFHQQYERA 656
               P   R+ SYHEL RAT+ F+E NL+G G           +G+ +AVKVFH Q E  
Sbjct: 749 DPLPPATWRKISYHELYRATEGFNETNLLGTGSCGSVYKGTLSDGLCIAVKVFHLQLEGE 808

Query: 657 LKSFEDECEVRKRIRHRNLVKIIS------------------------------------ 680
           L  F+ ECEV + +RHRNLVKIIS                                    
Sbjct: 809 LMRFDSECEVLRMLRHRNLVKIISSCCNLDFKALILEFIPHGSLEKWLYSHNYYLDILQR 868

Query: 681 --------SSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQ 732
                   S+LEYLH G + P++HCDLKPSNVL++EDMVAH+SDFGI++LL GE     Q
Sbjct: 869 LNIMIDVASALEYLHHGCTRPVVHCDLKPSNVLINEDMVAHVSDFGISRLL-GEGDAVTQ 927

Query: 733 TQTLATIGYMAPEYGTKGRVSTRGDVCSFGI-----ISGGKETRSMTVGE 777
           T TLATIGYMAPEYG +G VS +GDV S+GI      +  K T  M  GE
Sbjct: 928 TLTLATIGYMAPEYGLEGIVSVKGDVYSYGIFLMETFTRKKPTDDMFGGE 977

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359497186|ref|XP_003635448.1| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1-like [Vitis vinifera]

 Score =  544 bits (1401), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 345/887 (38%), Positives = 480/887 (54%), Gaps = 150/887 (16%)

Query: 57   LNISSFNLQGTITPQLGNLSSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQL--FG 114
            LN+SS +L G I   LG    LQ + L++N  +G+IPS I N+  L+ L   +N    F 
Sbjct: 201  LNLSSNHLSGKIPTGLGQCIQLQVISLAYNDFTGSIPSGIDNLVELQRLSLQNNSFTAFK 260

Query: 115  SLS-----SFIFNMSSMTTIDLSINRLSGELPANICK------------------IPSTL 151
             +S     + IFN+SS+  I  + N LSG LP +ICK                  +P+TL
Sbjct: 261  DISKALLFAEIFNVSSLQVIAFTDNSLSGSLPKDICKHLPNLQGLSLSQNHLSGQLPTTL 320

Query: 152  SKCKQLEELNLGFNNLSGAIPKEIGNLTKLKEIISTITNSTVCEIPREIGNLPYLARLAL 211
            S C +L  L+L FN   G+IPKEIGNL+KL+EI    TNS +  IP   GNL  L  L L
Sbjct: 321  SLCGELLFLSLSFNKFRGSIPKEIGNLSKLEEIYLG-TNSLIGSIPTSFGNLKALKFLNL 379

Query: 212  ATNNLVGVVPVTIFNMSALKEISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPS 271
              NNL G VP  IFN+S L+ ++++ N LSGSLPS I   LP++E L +  N FSG IP 
Sbjct: 380  GINNLTGTVPEAIFNISKLQSLAMVKNHLSGSLPSSIGTWLPDLEGLFIAGNEFSGIIPM 439

Query: 272  SITNSSKLSDLELGENLFSGFIPNTIGNLRNLEFGNIADNYLTSS--TPELSFLSSLTNC 329
            SI+N SKL+ L L  N F+G +P  +GNL  L+  ++A N LT      E+ FL+SLTNC
Sbjct: 440  SISNMSKLTVLGLSANSFTGNVPKDLGNLTKLKVLDLAGNQLTDEHVASEVGFLTSLTNC 499

Query: 330  KKLKVLIVTGNPLDGILPKSIGNFSLSLETILMANCSISGNIPQVVGNLSNLLVLELGGN 389
            K LK L +   P  G LP S+GN  ++LE+ + + C   G IP  +GNL+NL+ L+LG N
Sbjct: 500  KFLKNLWIGNIPFKGTLPNSLGNLPIALESFIASACQFRGTIPTGIGNLTNLIRLDLGAN 559

Query: 390  NLTGPIPVTFSQLQTLQAFDLTRNKLAGPITDELCHLARLHSLVLQGNKFSGSIPSCLGN 449
            +LTG IP T  QLQ LQ   +  N++ G I ++LCHL  L  L L  NK SGSIPSC G+
Sbjct: 560  DLTGSIPTTLGQLQKLQWLYIAGNRIRGSIPNDLCHLKDLGYLFLSSNKLSGSIPSCFGD 619

Query: 450  LTSVRVLYLGLNIFTSVLSSTIWNLKDILFIDVSSNFLDGPLSLDIGNLKVVIGLDFSRN 509
            L +++ L+L  N+    + +++W+L+D+L +++SSNFL G L  ++GN+K +  LD S+N
Sbjct: 620  LLALQELFLDSNVLAFNIPTSLWSLRDLLALNLSSNFLTGNLPPEVGNMKSITTLDLSKN 679

Query: 510  ------------------------NLSGDIPITIG------------------------- 520
                                     L G IPI  G                         
Sbjct: 680  LVSGYIPSKMGKLQSLITLSLSQNRLQGPIPIEFGDLVSLESLDLSQNNLSGTIPKSLEA 739

Query: 521  --------------EGEIPRGGPFANLTAKSFMGNELLCGLPDLQVSPCKPNKPNTHKKS 566
                          +GEIP GGPF N TA+SFM NE LCG P  QV  C  N      K+
Sbjct: 740  LIYLKYLNVSLNKLQGEIPNGGPFINFTAESFMFNEALCGAPHFQVMACDKNNRTQSWKT 799

Query: 567  RKMLLLVIVLPLSTALIVVVTLTLKWKLIKCWKSRTGPSNDGINSPQAIRRFSYHELLRA 626
            +  +L  I+LP+ + + +VV + L W  I+   +   P+      P    + S+ +LL A
Sbjct: 800  KSFILKYILLPVGSIVTLVVFIVL-W--IRRRDNMEIPTPIDSWLPGTHEKISHQQLLYA 856

Query: 627  TDRFSENNLIGIG-----------NGMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNL 675
            T+ F E+NLIG G           NG+ VA+KVF+ +++ AL+SF+ ECEV + IRHRNL
Sbjct: 857  TNDFGEDNLIGKGSQGMVYKGVLSNGLTVAIKVFNLEFQGALRSFDSECEVMQGIRHRNL 916

Query: 676  VKII--------------------------------------------SSSLEYLHFGHS 691
            V+II                                            +S+LEYLH   S
Sbjct: 917  VRIITCCSNLDFKALVLEYMPNGSLEKWLYSHNYFLDLIQRLNIMIDVASALEYLHHDCS 976

Query: 692  IPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGR 751
              ++HCDLKP+NVLLD+DMVAH++DFGI KLL+  + + +QT+TL TIGYMAPE+G+ G 
Sbjct: 977  SLVVHCDLKPNNVLLDDDMVAHVADFGITKLLTKTESM-QQTKTLGTIGYMAPEHGSDGI 1035

Query: 752  VSTRGDVCSFGIISGGKETRSMTVGETCTPVRESKYEVHPATTTIME 798
            VST+ DV S+GI+     +R   + E  T     K  V   + ++++
Sbjct: 1036 VSTKSDVYSYGILLMEVFSRKKPMDEMFTGGLTLKTWVESLSNSVIQ 1082

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	823
TAIR|locus:2149922	1031	EFR "EF-TU receptor" [Arabidop	0.608	0.485	0.341	1.1e-97
TAIR|locus:2075661	1025	AT3G47110 [Arabidopsis thalian	0.606	0.486	0.358	2.3e-95
UNIPROTKB|Q40640	1025	Xa21 "Receptor kinase-like pro	0.614	0.493	0.352	4.8e-94
TAIR|locus:2079142	1010	AT3G47570 [Arabidopsis thalian	0.607	0.495	0.342	1.2e-93
TAIR|locus:2079157	1011	AT3G47580 [Arabidopsis thalian	0.608	0.495	0.318	1.9e-88
TAIR|locus:2005507	976	ER "ERECTA" [Arabidopsis thali	0.799	0.674	0.303	2.1e-88
TAIR|locus:2075631	1009	AT3G47090 [Arabidopsis thalian	0.609	0.497	0.328	9e-86
TAIR|locus:2167948	966	ERL1 "ERECTA-like 1" [Arabidop	0.787	0.670	0.298	1e-84
TAIR|locus:2182855	967	ERL2 "ERECTA-like 2" [Arabidop	0.795	0.677	0.295	1.2e-81
TAIR|locus:2047525	980	AT2G24130 [Arabidopsis thalian	0.719	0.604	0.319	2.1e-78

TAIR|locus:2149922 EFR "EF-TU receptor" [Arabidopsis thaliana (taxid:3702)]

 Score = 748 (268.4 bits), Expect = 1.1e-97, Sum P(2) = 1.1e-97
 Identities = 174/510 (34%), Positives = 261/510 (51%)

Query:    12 QALLALKAHISYDHTNLFARNWTSSTSVCIWIGITCDVNSHRVIGLNISSFNLQGTITPQ 71
             QALL  K+ +S ++      +W  S+  C WIG+TC     RVI LN+  F L G I+P 
Sbjct:    33 QALLEFKSQVSENNKREVLASWNHSSPFCNWIGVTCGRRRERVISLNLGGFKLTGVISPS 92

Query:    72 LGNLSSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQLFGSLSSFIFNMSSMTTIDL 131
             +GNLS L+ L+L+ N     IP  +  +  L+ L+ S N L G + S + N S ++T+DL
Sbjct:    93 IGNLSFLRLLNLADNSFGSTIPQKVGRLFRLQYLNMSYNLLEGRIPSSLSNCSRLSTVDL 152

Query:   132 SINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEIGNLTKLKEIISTITNS 191
             S N L   +P+ +     +LSK   L  L+L  NNL+G  P  +GNLT L+++     N 
Sbjct:   153 SSNHLGHGVPSEL----GSLSK---LAILDLSKNNLTGNFPASLGNLTSLQKL-DFAYNQ 204

Query:   192 TVCEIPREIGNLPYLARLALATNNLVGVVPVTIFNMSALKEIXXXXXXXXXXXPSRIDLS 251
                EIP E+  L  +    +A N+  G  P  ++N+S+L+ +            +     
Sbjct:   205 MRGEIPDEVARLTQMVFFQIALNSFSGGFPPALYNISSLESLSLADNSFSGNLRADFGYL 264

Query:   252 LPNVETLNLGINSFSGTIPSSITNSSKLSDLELGENLFSGFIPNTIGNLRNLEFGNIADN 311
             LPN+  L LG N F+G IP ++ N S L   ++  N  SG IP + G LRNL +  I +N
Sbjct:   265 LPNLRRLLLGTNQFTGAIPKTLANISSLERFDISSNYLSGSIPLSFGKLRNLWWLGIRNN 324

Query:   312 YL-TSSTPELSFLSSLTNCKKLKVLIVTGNPLDGILPKSIGNFSLSLETILMANCSISGN 370
              L  +S+  L F+ ++ NC +L+ L V  N L G LP SI N S +L ++ +    ISG 
Sbjct:   325 SLGNNSSSGLEFIGAVANCTQLEYLDVGYNRLGGELPASIANLSTTLTSLFLGQNLISGT 384

Query:   371 IPQXXXXXXXXXXXXXXXXXXTGPIPVTFSQLQTLQAFDLTRNKLAGPITDELCHLARLH 430
             IP                   +G +PV+F +L  LQ  DL  N ++G I     ++ RL 
Sbjct:   385 IPHDIGNLVSLQELSLETNMLSGELPVSFGKLLNLQVVDLYSNAISGEIPSYFGNMTRLQ 444

Query:   431 SLVLQGNKFSGSIPSCLGNLTSVRVLYLGLNIFTSVLSSTIWNLKDILFIDVSSNFLDGP 490
              L L  N F G IP  LG    +  L++  N     +   I  +  + +ID+S+NFL G 
Sbjct:   445 KLHLNSNSFHGRIPQSLGRCRYLLDLWMDTNRLNGTIPQEILQIPSLAYIDLSNNFLTGH 504

Query:   491 LSLDIGNLKVVIGLDFSRNNLSGDIPITIG 520
                ++G L++++GL  S N LSG +P  IG
Sbjct:   505 FPEEVGKLELLVGLGASYNKLSGKMPQAIG 534

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0010204 "defense response signaling pathway, resistance gene-independent" evidence=IMP

GO:0016045 "detection of bacterium" evidence=RCA;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0002764 "immune response-regulating signaling pathway" evidence=IMP

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0019199 "transmembrane receptor protein kinase activity" evidence=TAS

GO:0010359 "regulation of anion channel activity" evidence=IMP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009581 "detection of external stimulus" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0050776 "regulation of immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2075661 AT3G47110 [Arabidopsis thaliana (taxid:3702)]

 Score = 741 (265.9 bits), Expect = 2.3e-95, Sum P(2) = 2.3e-95
 Identities = 183/511 (35%), Positives = 271/511 (53%)

Query:    11 QQALLALKAHISYDHTNLFARNWTSSTSVCIWIGITCDVNSHRVIGLNISSFNLQGTITP 70
             +QALL  K+ +S + + +   +W  S  +C W G+ C +   RV G+++    L G ++P
Sbjct:    41 KQALLEFKSQVS-ETSRVVLGSWNDSLPLCSWTGVKCGLKHRRVTGVDLGGLKLTGVVSP 99

Query:    71 QLGNLSSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQLFGSLSSFIF-NMSSMTTI 129
              +GNLS L++L+L+ N   G IPS + N+  L+ L+ S+N LFG +   +  N SS++T+
Sbjct:   100 FVGNLSFLRSLNLADNFFHGAIPSEVGNLFRLQYLNMSNN-LFGGVIPVVLSNCSSLSTL 158

Query:   130 DLSINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEIGNLTKLKEIISTIT 189
             DLS N L   +P        +LSK   L  L+LG NNL+G  P  +GNLT L +++  I 
Sbjct:   159 DLSSNHLEQGVPLEF----GSLSK---LVLLSLGRNNLTGKFPASLGNLTSL-QMLDFIY 210

Query:   190 NSTVCEIPREIGNLPYLARLALATNNLVGVVPVTIFNMSALKEIXXXXXXXXXXXPSRID 249
             N    EIP +I  L  +    +A N   GV P  I+N+S+L  +                
Sbjct:   211 NQIEGEIPGDIARLKQMIFFRIALNKFNGVFPPPIYNLSSLIFLSITGNSFSGTLRPDFG 270

Query:   250 LSLPNVETLNLGINSFSGTIPSSITNSSKLSDLELGENLFSGFIPNTIGNLRNLEFGNIA 309
               LPN++ L +GINSF+GTIP +++N S L  L++  N  +G IP + G L+NL    + 
Sbjct:   271 SLLPNLQILYMGINSFTGTIPETLSNISSLRQLDIPSNHLTGKIPLSFGRLQNLLLLGLN 330

Query:   310 DNYLTS-STPELSFLSSLTNCKKLKVLIVTGNPLDGILPKSIGNFSLSLETILMANCSIS 368
             +N L + S+ +L FL +LTNC +L+ L V  N L G LP  I N S  L  + +    IS
Sbjct:   331 NNSLGNYSSGDLDFLGALTNCSQLQYLNVGFNKLGGQLPVFIANLSTQLTELSLGGNLIS 390

Query:   369 GNIPQXXXXXXXXXXXXXXXXXXTGPIPVTFSQLQTLQAFDLTRNKLAGPITDELCHLAR 428
             G+IP                   TG +P +  +L  L+   L  N L+G I   L +++ 
Sbjct:   391 GSIPHGIGNLVSLQTLDLGENLLTGKLPPSLGELSELRKVLLYSNGLSGEIPSSLGNISG 450

Query:   429 LHSLVLQGNKFSGSIPSCLGNLTSVRVLYLGLNIFTSVLSSTIWNLKDILFIDVSSNFLD 488
             L  L L  N F GSIPS LG+ + +  L LG N     +   +  L  ++ ++VS N L 
Sbjct:   451 LTYLYLLNNSFEGSIPSSLGSCSYLLDLNLGTNKLNGSIPHELMELPSLVVLNVSFNLLV 510

Query:   489 GPLSLDIGNLKVVIGLDFSRNNLSGDIPITI 519
             GPL  DIG LK ++ LD S N LSG IP T+
Sbjct:   511 GPLRQDIGKLKFLLALDVSYNKLSGQIPQTL 541

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

UNIPROTKB|Q40640 Xa21 "Receptor kinase-like protein" [Oryza sativa (taxid:4530)]

 Score = 726 (260.6 bits), Expect = 4.8e-94, Sum P(2) = 4.8e-94
 Identities = 184/522 (35%), Positives = 280/522 (53%)

Query:    13 ALLALKAHISYDHTNLFARNWTSST--SVCIWIGITCDV----NSHRVIGLNISSFNLQG 66
             ALL+ K+ + Y      A +W +S     C W+G+ C      + HRV+ L + S NL G
Sbjct:    35 ALLSFKSSLLYQGGQSLA-SWNTSGHGQHCTWVGVVCGRRRRRHPHRVVKLLLRSSNLSG 93

Query:    67 TITPQLGNLSSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQLFGSLSSFIFNMSSM 126
              I+P LGNLS L+ LDL  N LSG IP  +  +  L+LL+ SDN + GS+ + I   + +
Sbjct:    94 IISPSLGNLSFLRELDLGDNYLSGEIPPELSRLSRLQLLELSDNSIQGSIPAAIGACTKL 153

Query:   127 TTIDLSINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEIGNLTKLKEIIS 186
             T++DLS N+L G +P    +I ++L   K L  L L  N LSG IP  +GNLT L+E   
Sbjct:   154 TSLDLSHNQLRGMIPR---EIGASL---KHLSNLYLYKNGLSGEIPSALGNLTSLQEFDL 207

Query:   187 TITNSTVCEIPREIGNLPYLARLALATNNLVGVVPVTIFNMSALKEIXXXXXXXXXXXPS 246
             +  N     IP  +G L  L  + L  NNL G++P +I+N+S+L+             P+
Sbjct:   208 SF-NRLSGAIPSSLGQLSSLLTMNLGQNNLSGMIPNSIWNLSSLRAFSVRENKLGGMIPT 266

Query:   247 RIDLSLPNVETLNLGINSFSGTIPSSITNSSKLSDLELGENLFSGFIPNTIGNLRNLEFG 306
                 +L  +E +++G N F G IP+S+ N+S L+ +++  NLFSG I +  G LRNL   
Sbjct:   267 NAFKTLHLLEVIDMGTNRFHGKIPASVANASHLTVIQIYGNLFSGIITSGFGRLRNLTEL 326

Query:   307 NIADN-YLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGILPKSIGNFSLSLETILMANC 365
              +  N + T    +  F+S LTNC KL+ L +  N L G+LP S  N S SL  + +   
Sbjct:   327 YLWRNLFQTREQDDWGFISDLTNCSKLQTLNLGENNLGGVLPNSFSNLSTSLSFLALELN 386

Query:   366 SISGNIPQXXXXXXXXXXXXXXXXXXTGPIPVTFSQLQTLQAFDLTRNKLAGPITDELCH 425
              I+G+IP+                   G +P +  +L+ L       N L+G I   + +
Sbjct:   387 KITGSIPKDIGNLIGLQHLYLCNNNFRGSLPSSLGRLKNLGILLAYENNLSGSIPLAIGN 446

Query:   426 LARLHSLVLQGNKFSGSIPSCLGNLTSVRVLYLGLNIFTSVLSSTIWNLKDI-LFIDVSS 484
             L  L+ L+L  NKFSG IP  L NLT++  L L  N  +  + S ++N++ + + I+VS 
Sbjct:   447 LTELNILLLGTNKFSGWIPYTLSNLTNLLSLGLSTNNLSGPIPSELFNIQTLSIMINVSK 506

Query:   485 NFLDGPLSLDIGNLKVVIGLDFSRNNLSGDIPITIGEGEIPR 526
             N L+G +  +IG+LK ++      N LSG IP T+G+ ++ R
Sbjct:   507 NNLEGSIPQEIGHLKNLVEFHAESNRLSGKIPNTLGDCQLLR 548

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2079142 AT3G47570 [Arabidopsis thaliana (taxid:3702)]

 Score = 716 (257.1 bits), Expect = 1.2e-93, Sum P(2) = 1.2e-93
 Identities = 175/511 (34%), Positives = 266/511 (52%)

Query:    11 QQALLALKAHISYDHTNLFARNWTSSTSVCIWIGITCDVNSHRVIGLNISSFNLQGTITP 70
             +QALL  K+ +S D   + + +W  S  +C W G+TC   + RV  L +    L G I+P
Sbjct:    26 RQALLQFKSQVSEDKRVVLS-SWNHSFPLCNWKGVTCGRKNKRVTHLELGRLQLGGVISP 84

Query:    71 QLGNLSSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQLFGSLSSFIFNMSSMTTID 130
              +GNLS L +LDL  N   G IP  +  +  L+ LD   N L G +   ++N S +  + 
Sbjct:    85 SIGNLSFLVSLDLYENFFGGTIPQEVGQLSRLEYLDMGINYLRGPIPLGLYNCSRLLNLR 144

Query:   131 LSINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEIGNLTKLKEIISTITN 190
             L  NRL G        +PS L     L +LNL  NN+ G +P  +GNLT L+++  +  N
Sbjct:   145 LDSNRLGGS-------VPSELGSLTNLVQLNLYGNNMRGKLPTSLGNLTLLEQLALS-HN 196

Query:   191 STVCEIPREIGNLPYLARLALATNNLVGVVPVTIFNMSALKEIXXXXXXXXXXXPSRIDL 250
             +   EIP ++  L  +  L L  NN  GV P  ++N+S+LK +              + +
Sbjct:   197 NLEGEIPSDVAQLTQIWSLQLVANNFSGVFPPALYNLSSLKLLGIGYNHFSGRLRPDLGI 256

Query:   251 SLPNVETLNLGINSFSGTIPSSITNSSKLSDLELGENLFSGFIPNTIGNLRNLEFGNIAD 310
              LPN+ + N+G N F+G+IP++++N S L  L + EN  +G IP T GN+ NL+   +  
Sbjct:   257 LLPNLLSFNMGGNYFTGSIPTTLSNISTLERLGMNENNLTGSIP-TFGNVPNLKLLFLHT 315

Query:   311 NYLTS-STPELSFLSSLTNCKKLKVLIVTGNPLDGILPKSIGNFSLSLETILMANCSISG 369
             N L S S+ +L FL+SLTNC +L+ L +  N L G LP SI N S  L T+ +    ISG
Sbjct:   316 NSLGSDSSRDLEFLTSLTNCTQLETLGIGRNRLGGDLPISIANLSAKLVTLDLGGTLISG 375

Query:   370 NIPQXXXXXXXXXXXXXXXXXXTGPIPVTFSQLQTLQAFDLTRNKLAGPITDELCHLARL 429
             +IP                   +GP+P +  +L  L+   L  N+L+G I   + ++  L
Sbjct:   376 SIPYDIGNLINLQKLILDQNMLSGPLPTSLGKLLNLRYLSLFSNRLSGGIPAFIGNMTML 435

Query:   430 HSLVLQGNKFSGSIPSCLGNLTSVRVLYLGLNIFTSVLSSTIWNLKDILFIDVSSNFLDG 489
              +L L  N F G +P+ LGN + +  L++G N     +   I  ++ +L +D+S N L G
Sbjct:   436 ETLDLSNNGFEGIVPTSLGNCSHLLELWIGDNKLNGTIPLEIMKIQQLLRLDMSGNSLIG 495

Query:   490 PLSLDIGNLKVVIGLDFSRNNLSGDIPITIG 520
              L  DIG L+ +  L    N LSG +P T+G
Sbjct:   496 SLPQDIGALQNLGTLSLGDNKLSGKLPQTLG 526

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2079157 AT3G47580 [Arabidopsis thaliana (taxid:3702)]

 Score = 676 (243.0 bits), Expect = 1.9e-88, Sum P(2) = 1.9e-88
 Identities = 163/511 (31%), Positives = 255/511 (49%)

Query:    11 QQALLALKAHISYDHTNLFARNWTSSTSVCIWIGITCDVNSHRVIGLNISSFNLQGTITP 70
             +QALL  K+ +S    ++ + +W +S  +C W  +TC     RV  LN+    L G ++P
Sbjct:    26 RQALLEFKSQVSEGKRDVLS-SWNNSFPLCNWKWVTCGRKHKRVTHLNLGGLQLGGIVSP 84

Query:    71 QLGNLSSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQLFGSLSSFIFNMSSMTTID 130
              +GN+S L +LDLS N   G IP  + N+  L+ L  + N L G + + + N S +  +D
Sbjct:    85 SIGNVSFLISLDLSDNAFGGIIPREVGNLFRLEHLYMAFNSLEGGIPATLSNCSRLLNLD 144

Query:   131 LSINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEIGNLTKLKEIISTITN 190
             L  N L          +PS L    +L  L+LG NNL G +P+ +GNLT LK +  T  N
Sbjct:   145 LYSNPLRQG-------VPSELGSLTKLVILDLGRNNLKGKLPRSLGNLTSLKSLGFT-DN 196

Query:   191 STVCEIPREIGNLPYLARLALATNNLVGVVPVTIFNMSALKEIXXXXXXXXXXXPSRIDL 250
             +   E+P E+  L  +  L L+ N   GV P  I+N+SAL+++                 
Sbjct:   197 NIEGEVPDELARLSQMVGLGLSMNKFFGVFPPAIYNLSALEDLFLFGSGFSGSLKPDFGN 256

Query:   251 SLPNVETLNLGINSFSGTIPSSITNSSKLSDLELGENLFSGFIPNTIGNLRNLEFGNIAD 310
              LPN+  LNLG N   G IP++++N S L    + +N+ +G I    G + +L++ ++++
Sbjct:   257 LLPNIRELNLGENDLVGAIPTTLSNISTLQKFGINKNMMTGGIYPNFGKVPSLQYLDLSE 316

Query:   311 NYLTSST-PELSFLSSLTNCKKLKVLIVTGNPLDGILPKSIGNFSLSLETILMANCSISG 369
             N L S T  +L F+ SLTNC  L++L V    L G LP SI N S  L ++ +      G
Sbjct:   317 NPLGSYTFGDLEFIDSLTNCTHLQLLSVGYTRLGGALPTSIANMSTELISLNLIGNHFFG 376

Query:   370 NIPQXXXXXXXXXXXXXXXXXXTGPIPVTFSQLQTLQAFDLTRNKLAGPITDELCHLARL 429
             +IPQ                  TGP+P +  +L  L    L  N+++G I   + +L +L
Sbjct:   377 SIPQDIGNLIGLQRLQLGKNMLTGPLPTSLGKLLRLGLLSLYSNRMSGEIPSFIGNLTQL 436

Query:   430 HSLVLQGNKFSGSIPSCLGNLTSVRVLYLGLNIFTSVLSSTIWNLKDILFIDVSSNFLDG 489
               L L  N F G +P  LG  + +  L +G N     +   I  +  ++ + +  N L G
Sbjct:   437 EILYLSNNSFEGIVPPSLGKCSHMLDLRIGYNKLNGTIPKEIMQIPTLVNLSMEGNSLSG 496

Query:   490 PLSLDIGNLKVVIGLDFSRNNLSGDIPITIG 520
              L  DIG+L+ ++ L    N  SG +P T+G
Sbjct:   497 SLPNDIGSLQNLVKLSLENNKFSGHLPQTLG 527

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2005507 ER "ERECTA" [Arabidopsis thaliana (taxid:3702)]

 Score = 722 (259.2 bits), Expect = 2.1e-88, Sum P(2) = 2.1e-88
 Identities = 220/725 (30%), Positives = 346/725 (47%)

Query:     2 LLKSIISQHQQALLALKAHISYDHTNLFARNWTSSTS--VCIWIGITCDVNSHRVIGLNI 59
             L+ ++ S+    LL +K   S+   N    +WT+S S   C+W G++C+  +  V+ LN+
Sbjct:    18 LVATVTSEEGATLLEIKK--SFKDVNNVLYDWTTSPSSDYCVWRGVSCENVTFNVVALNL 75

Query:    60 SSFNLQGTITPQLGNLSSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQLFGSLSSF 119
             S  NL G I+P +G+L SL ++DL  N+LSG IP  I +  +L+ LD S N+L G +   
Sbjct:    76 SDLNLDGEISPAIGDLKSLLSIDLRGNRLSGQIPDEIGDCSSLQNLDLSFNELSGDIPFS 135

Query:   120 IFNMSSMTTIDLSINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEIGNLT 179
             I  +  +  + L  N+L G  P     IPSTLS+   L+ L+L  N LSG IP+ I    
Sbjct:   136 ISKLKQLEQLILKNNQLIG--P-----IPSTLSQIPNLKILDLAQNKLSGEIPRLI-YWN 187

Query:   180 KLKEIISTITNSTVCEIPREIGNLPYLARLALATNNLVGVVPVTIFNMSALKEIXXXXXX 239
             ++ + +    N+ V  I  ++  L  L    +  N+L G +P TI N +A + +      
Sbjct:   188 EVLQYLGLRGNNLVGNISPDLCQLTGLWYFDVRNNSLTGSIPETIGNCTAFQVLDLSYNQ 247

Query:   240 XXXXXPSRIDLSLPNVETLNLGINSFSGTIPSSITNSSKLSDLELGENLFSGFIPNTIGN 299
                  P   D+    V TL+L  N  SG IPS I     L+ L+L  NL SG IP  +GN
Sbjct:   248 LTGEIP--FDIGFLQVATLSLQGNQLSGKIPSVIGLMQALAVLDLSGNLLSGSIPPILGN 305

Query:   300 LRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGILPKSIGNFSLSLET 359
             L   E   +  N LT S P       L N  KL  L +  N L G +P  +G  +  L  
Sbjct:   306 LTFTEKLYLHSNKLTGSIPP-----ELGNMSKLHYLELNDNHLTGHIPPELGKLT-DLFD 359

Query:   360 ILMANCSISGNIPQXXXXXXXXXXXXXXXXXXTGPIPVTFSQLQTLQAFDLTRNKLAGPI 419
             + +AN  + G IP                   +G IP  F +L+++   +L+ N + GPI
Sbjct:   360 LNVANNDLEGPIPDHLSSCTNLNSLNVHGNKFSGTIPRAFQKLESMTYLNLSSNNIKGPI 419

Query:   420 TDELCHLARLHSLVLQGNKFSGSIPSCLGNLTSVRVLYLGLNIFTSVLSSTIWNLKDILF 479
               EL  +  L +L L  NK +G IPS LG+L  +  + L  N  T V+     NL+ I+ 
Sbjct:   420 PVELSRIGNLDTLDLSNNKINGIIPSSLGDLEHLLKMNLSRNHITGVVPGDFGNLRSIME 479

Query:   480 IDVSSNFLDGPLSLDIGNLKVVIGLDFSRNNLSGDI-------PITIGE-------GEIP 525
             ID+S+N + GP+  ++  L+ +I L    NNL+G++        +T+         G+IP
Sbjct:   480 IDLSNNDISGPIPEELNQLQNIILLRLENNNLTGNVGSLANCLSLTVLNVSHNNLVGDIP 539

Query:   526 RGGPFANLTAKSFMGNELLCGLPDLQVSPCKPNKPNTHKKSRKMLLLVIVLPLSTALIVV 585
             +   F+  +  SF+GN  LCG      SPC  ++    +  R  +    +L ++   +V+
Sbjct:   540 KNNNFSRFSPDSFIGNPGLCG--SWLNSPCHDSR----RTVRVSISRAAILGIAIGGLVI 593

Query:   586 VTLTLKWKLIKCWKSRTGPSNDG-------INSPQAI------RRFSYHELLRATDRFSE 632
             + + L   +  C      P  DG        ++P+ +          Y +++R T+  SE
Sbjct:   594 LLMVL---IAACRPHNPPPFLDGSLDKPVTYSTPKLVILHMNMALHVYEDIMRMTENLSE 650

Query:   633 NNLIGIG-----------NGMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVKIISS 681
               +IG G           N   VA+K  +    +++K FE E E+   I+HRNLV + + 
Sbjct:   651 KYIIGHGASSTVYKCVLKNCKPVAIKRLYSHNPQSMKQFETELEMLSSIKHRNLVSLQAY 710

Query:   682 SLEYL 686
             SL +L
Sbjct:   711 SLSHL 715

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0048281 "inflorescence morphogenesis" evidence=IMP

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=IMP

GO:0042742 "defense response to bacterium" evidence=IMP

GO:0005739 "mitochondrion" evidence=IDA

GO:0050832 "defense response to fungus" evidence=IMP

GO:0010103 "stomatal complex morphogenesis" evidence=RCA;IMP

GO:0001558 "regulation of cell growth" evidence=IGI;IMP

GO:0009965 "leaf morphogenesis" evidence=RCA;IMP

GO:0010148 "transpiration" evidence=IMP

GO:0030155 "regulation of cell adhesion" evidence=IMP

GO:0051302 "regulation of cell division" evidence=IGI;IMP

GO:0009664 "plant-type cell wall organization" evidence=IMP

GO:0008356 "asymmetric cell division" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0031540 "regulation of anthocyanin biosynthetic process" evidence=RCA

GO:0019199 "transmembrane receptor protein kinase activity" evidence=ISS

GO:2000027 "regulation of organ morphogenesis" evidence=IMP

TAIR|locus:2075631 AT3G47090 [Arabidopsis thaliana (taxid:3702)]

 Score = 651 (234.2 bits), Expect = 9.0e-86, Sum P(2) = 9.0e-86
 Identities = 168/512 (32%), Positives = 248/512 (48%)

Query:    11 QQALLALKAHISYDHTNLFARNWTSSTSVCIWIGITCDVNSHRVIGLNISSFNLQGTITP 70
             +QALL +K+ +S    +  +  W +S  +C W  + C     RV  L++    L G I+P
Sbjct:    26 RQALLEIKSQVSESKRDALSA-WNNSFPLCSWKWVRCGRKHKRVTRLDLGGLQLGGVISP 84

Query:    71 QLGNLSSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQLFGSLSSFIFNMSSMTTID 130
              +GNLS L  LDLS+N   G IP  + N+  LK L    N L G + + + N S +  +D
Sbjct:    85 SIGNLSFLIYLDLSNNSFGGTIPQEMGNLFRLKYLAVGFNYLEGEIPASLSNCSRLLYLD 144

Query:   131 LSINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEIGNLTKLKEIISTITN 190
             L  N L G+       +PS L   ++L  L LG N+L G  P  I NLT L  +++   N
Sbjct:   145 LFSNNL-GD------GVPSELGSLRKLLYLYLGLNDLKGKFPVFIRNLTSLI-VLNLGYN 196

Query:   191 STVCEIPREIGNLPYLARLALATNNLVGVVPVTIFNMSALKEIXXXXXXXXXXXPSRIDL 250
                 EIP +I  L  +  L L  NN  GV P   +N+S+L+ +                 
Sbjct:   197 HLEGEIPDDIAMLSQMVSLTLTMNNFSGVFPPAFYNLSSLENLYLLGNGFSGNLKPDFGN 256

Query:   251 SLPNVETLNLGINSFSGTIPSSITNSSKLSDLELGENLFSGFIPNTIGNLRNLEFGNIAD 310
              LPN+  L+L  N  +G IP+++ N S L    +G+N  +G I    G L NL +  +A+
Sbjct:   257 LLPNIHELSLHGNFLTGAIPTTLANISTLEMFGIGKNRMTGSISPNFGKLENLHYLELAN 316

Query:   311 NYLTS-STPELSFLSSLTNCKKLKVLIVTGNPLDGILPKSIGNFSLSLETILMANCSISG 369
             N L S S  +L+FL +LTNC  L  L V+ N L G LP SI N S  L  + +    I G
Sbjct:   317 NSLGSYSFGDLAFLDALTNCSHLHGLSVSYNRLGGALPTSIVNMSTELTVLNLKGNLIYG 376

Query:   370 NIPQXXXXXXXXXXXXXXXXXXTGPIPVTFSQLQTLQAFDLTRNKLAGPITDELCHLARL 429
             +IP                   TGP+P +   L  L    L  N+ +G I   + +L +L
Sbjct:   377 SIPHDIGNLIGLQSLLLADNLLTGPLPTSLGNLVGLGELILFSNRFSGEIPSFIGNLTQL 436

Query:   430 HSLVLQGNKFSGSIPSCLGNLTSVRVLYLGLNIFTSVLSSTIWNLKDILFIDVSSNFLDG 489
               L L  N F G +P  LG+ + +  L +G N     +   I  +  ++ +++ SN L G
Sbjct:   437 VKLYLSNNSFEGIVPPSLGDCSHMLDLQIGYNKLNGTIPKEIMQIPTLVHLNMESNSLSG 496

Query:   490 PLSLDIGNLKVVIGLDFSRNNLSGDIPITIGE 521
              L  DIG L+ ++ L    NNLSG +P T+G+
Sbjct:   497 SLPNDIGRLQNLVELLLGNNNLSGHLPQTLGK 528

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2167948 ERL1 "ERECTA-like 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 677 (243.4 bits), Expect = 1.0e-84, Sum P(2) = 1.0e-84
 Identities = 212/710 (29%), Positives = 329/710 (46%)

Query:     5 SIISQHQQALLALKAHISYDHTNLFARNWTS--STSVCIWIGITCDVNSHRVIGLNISSF 62
             S ++   +AL+A+K   S +  N+   +W    ++ +C W G+ CD  S+ V+ LN+SS 
Sbjct:    24 SAMNNEGKALMAIKGSFS-NLVNMLL-DWDDVHNSDLCSWRGVFCDNVSYSVVSLNLSSL 81

Query:    63 NLQGTITPQLGNLSSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQLFGSLSSFIFN 122
             NL G I+P +G+L +LQ++DL  NKL+G IP  I N  +L  LD S+N L+G +   I  
Sbjct:    82 NLGGEISPAIGDLRNLQSIDLQGNKLAGQIPDEIGNCASLVYLDLSENLLYGDIPFSISK 141

Query:   123 MSSMTTIDLSINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEIGNLTKLK 182
             +  + T++L  N+L+G +PA + +IP+       L+ L+L  N+L+G    EI  L    
Sbjct:   142 LKQLETLNLKNNQLTGPVPATLTQIPN-------LKRLDLAGNHLTG----EISRLLYWN 190

Query:   183 EIISTIT---NSTVCEIPREIGNLPYLARLALATNNLVGVVPVTIFNMSALKEIXXXXXX 239
             E++  +    N     +  ++  L  L    +  NNL G +P +I N ++ + +      
Sbjct:   191 EVLQYLGLRGNMLTGTLSSDMCQLTGLWYFDVRGNNLTGTIPESIGNCTSFQILDISYNQ 250

Query:   240 XXXXXPSRIDLSLPNVETLNLGINSFSGTIPSSITNSSKLSDLELGENLFSGFIPNTIGN 299
                  P  I      V TL+L  N  +G IP  I     L+ L+L +N   G IP  +GN
Sbjct:   251 ITGEIPYNIGFL--QVATLSLQGNRLTGRIPEVIGLMQALAVLDLSDNELVGPIPPILGN 308

Query:   300 LRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGILPKSIGNFSLSLET 359
             L       +  N LT   P     S L N  +L  L +  N L G +P  +G      E 
Sbjct:   309 LSFTGKLYLHGNMLTGPIP-----SELGNMSRLSYLQLNDNKLVGTIPPELGKLEQLFE- 362

Query:   360 ILMANCSISGNIPQXXXXXXXXXXXXXXXXXXTGPIPVTFSQLQTLQAFDLTRNKLAGPI 419
             + +AN  + G IP                   +G IP+ F  L +L   +L+ N   G I
Sbjct:   363 LNLANNRLVGPIPSNISSCAALNQFNVHGNLLSGSIPLAFRNLGSLTYLNLSSNNFKGKI 422

Query:   420 TDELCHLARLHSLVLQGNKFSGSIPSCLGNLTSVRVLYLGLNIFTSVLSSTIWNLKDILF 479
               EL H+  L  L L GN FSGSIP  LG+L  + +L L  N  +  L +   NL+ I  
Sbjct:   423 PVELGHIINLDKLDLSGNNFSGSIPLTLGDLEHLLILNLSRNHLSGQLPAEFGNLRSIQM 482

Query:   480 IDVSSNFLDGPLSLDIGNLKVVIGLDFSRNNLSGDIP---------ITIG------EGEI 524
             IDVS N L G +  ++G L+ +  L  + N L G IP         + +        G +
Sbjct:   483 IDVSFNLLSGVIPTELGQLQNLNSLILNNNKLHGKIPDQLTNCFTLVNLNVSFNNLSGIV 542

Query:   525 PRGGPFANLTAKSFMGNELLCGLPDLQVSPCKPNKPNTHKKSRKMLLLVI--VLPLSTAL 582
             P    F+     SF+GN  LCG  +   S C P  P +   SR  L+ ++  V+ L   +
Sbjct:   543 PPMKNFSRFAPASFVGNPYLCG--NWVGSICGP-LPKSRVFSRGALICIVLGVITLLCMI 599

Query:   583 IVVVTLTLKWKLIKCWKSRTGPSNDGI---NSPQAIRRFSYHELLRATDRFSENNLIGIG 639
              + V  +++ K I    S+       +   +   AI  F   +++R T+  +E  +IG G
Sbjct:   600 FLAVYKSMQQKKILQGSSKQAEGLTKLVILHMDMAIHTFD--DIMRVTENLNEKFIIGYG 657

Query:   640 -----------NGMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVKI 678
                        +   +A+K  + QY   L+ FE E E    IRHRN+V +
Sbjct:   658 ASSTVYKCALKSSRPIAIKRLYNQYPHNLREFETELETIGSIRHRNIVSL 707

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0010103 "stomatal complex morphogenesis" evidence=IGI;RCA

GO:0009553 "embryo sac development" evidence=IGI

GO:0048481 "ovule development" evidence=IGI;RCA

GO:0016020 "membrane" evidence=IDA

GO:0001708 "cell fate specification" evidence=RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

GO:0009886 "post-embryonic morphogenesis" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0048441 "petal development" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

GO:0048507 "meristem development" evidence=RCA

TAIR|locus:2182855 ERL2 "ERECTA-like 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 668 (240.2 bits), Expect = 1.2e-81, Sum P(2) = 1.2e-81
 Identities = 211/714 (29%), Positives = 326/714 (45%)

Query:     1 MLLKSI--ISQHQQALLALKAHISYDHTNLFARNWTS--STSVCIWIGITCDVNSHRVIG 56
             MLL S+  ++   +AL+A+KA  S +  N+   +W    +   C W G+ CD  S  V+ 
Sbjct:    20 MLLGSVSPMNNEGKALMAIKASFS-NVANMLL-DWDDVHNHDFCSWRGVFCDNVSLNVVS 77

Query:    57 LNISSFNLQGTITPQLGNLSSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQLFGSL 116
             LN+S+ NL G I+  LG+L +LQ++DL  NKL G IP  I N  +L  +DFS N LFG +
Sbjct:    78 LNLSNLNLGGEISSALGDLMNLQSIDLQGNKLGGQIPDEIGNCVSLAYVDFSTNLLFGDI 137

Query:   117 SSFIFNMSSMTTIDLSINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEIG 176
                I  +  +  ++L  N+L+G +PA + +IP+       L+ L+L  N L+G IP+ + 
Sbjct:   138 PFSISKLKQLEFLNLKNNQLTGPIPATLTQIPN-------LKTLDLARNQLTGEIPRLL- 189

Query:   177 NLTKLKEIISTITNSTVCEIPREIGNLPYLARLALATNNLVGVVPVTIFNMSALKEIXXX 236
                ++ + +    N     +  ++  L  L    +  NNL G +P +I N ++ + +   
Sbjct:   190 YWNEVLQYLGLRGNMLTGTLSPDMCQLTGLWYFDVRGNNLTGTIPESIGNCTSFEILDVS 249

Query:   237 XXXXXXXXPSRIDLSLPNVETLNLGINSFSGTIPSSITNSSKLSDLELGENLFSGFIPNT 296
                     P  I      V TL+L  N  +G IP  I     L+ L+L +N  +G IP  
Sbjct:   250 YNQITGVIPYNIGFL--QVATLSLQGNKLTGRIPEVIGLMQALAVLDLSDNELTGPIPPI 307

Query:   297 IGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGILPKSIGNFSLS 356
             +GNL       +  N LT   P       L N  +L  L +  N L G +P  +G     
Sbjct:   308 LGNLSFTGKLYLHGNKLTGQIPP-----ELGNMSRLSYLQLNDNELVGKIPPELGKLEQL 362

Query:   357 LETILMANCSISGNIPQXXXXXXXXXXXXXXXXXXTGPIPVTFSQLQTLQAFDLTRNKLA 416
              E + +AN ++ G IP                   +G +P+ F  L +L   +L+ N   
Sbjct:   363 FE-LNLANNNLVGLIPSNISSCAALNQFNVHGNFLSGAVPLEFRNLGSLTYLNLSSNSFK 421

Query:   417 GPITDELCHLARLHSLVLQGNKFSGSIPSCLGNLTSVRVLYLGLNIFTSVLSSTIWNLKD 476
             G I  EL H+  L +L L GN FSGSIP  LG+L  + +L L  N     L +   NL+ 
Sbjct:   422 GKIPAELGHIINLDTLDLSGNNFSGSIPLTLGDLEHLLILNLSRNHLNGTLPAEFGNLRS 481

Query:   477 ILFIDVSSNFLDGPLSLDIGNLKVVIGLDFSRNNLSGDIP-----------ITIG----E 521
             I  IDVS NFL G +  ++G L+ +  L  + N + G IP           + I      
Sbjct:   482 IQIIDVSFNFLAGVIPTELGQLQNINSLILNNNKIHGKIPDQLTNCFSLANLNISFNNLS 541

Query:   522 GEIPRGGPFANLTAKSFMGNELLCGLPDLQVSPCKPNKPNTHKKSRKMLLLVIVLPLSTA 581
             G IP    F   +  SF GN  LCG  +   S C P+ P +   +R + ++ +VL   T 
Sbjct:   542 GIIPPMKNFTRFSPASFFGNPFLCG--NWVGSICGPSLPKSQVFTR-VAVICMVLGFITL 598

Query:   582 LIVVVTLTLKWKLIKCWKSRTGPSNDG------INSPQAIRRFSYHELLRATDRFSENNL 635
             + ++     K K  K     +    +G      ++   AI  F   +++R T+   E  +
Sbjct:   599 ICMIFIAVYKSKQQKPVLKGSSKQPEGSTKLVILHMDMAIHTFD--DIMRVTENLDEKYI 656

Query:   636 IGIG-----------NGMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVKI 678
             IG G               +A+K  + QY    + FE E E    IRHRN+V +
Sbjct:   657 IGYGASSTVYKCTSKTSRPIAIKRIYNQYPSNFREFETELETIGSIRHRNIVSL 710

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0010103 "stomatal complex morphogenesis" evidence=IGI;RCA

GO:0009553 "embryo sac development" evidence=IGI

GO:0048481 "ovule development" evidence=IGI;RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009686 "gibberellin biosynthetic process" evidence=RCA

GO:0009740 "gibberellic acid mediated signaling pathway" evidence=RCA

GO:0009845 "seed germination" evidence=RCA

GO:0009886 "post-embryonic morphogenesis" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

GO:0048507 "meristem development" evidence=RCA

GO:0048608 "reproductive structure development" evidence=RCA

TAIR|locus:2047525 AT2G24130 [Arabidopsis thaliana (taxid:3702)]

 Score = 605 (218.0 bits), Expect = 2.1e-78, Sum P(2) = 2.1e-78
 Identities = 212/663 (31%), Positives = 325/663 (49%)

Query:    57 LNISSFNLQGTITPQLGNL-SSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQLFGS 115
             L++S     G I P++G+L  +L+ L LS N L GNIP  +  ++ L  LD   N+L GS
Sbjct:    95 LDLSRNFFVGKIPPEIGSLHETLKQLSLSENLLHGNIPQELGLLNRLVYLDLGSNRLNGS 154

Query:   116 LSSFIF---NMSSMTTIDLSINRLSGELPANI-CKIPSTLSKCKQLEELNLGFNNLSGAI 171
             +   +F   + SS+  IDLS N L+GE+P N  C +       K+L  L L  N L+G +
Sbjct:   155 IPVQLFCNGSSSSLQYIDLSNNSLTGEIPLNYHCHL-------KELRFLLLWSNKLTGTV 207

Query:   172 PKEIGNLTKLKEIISTITNSTVCEIPRE-IGNLPYLARLALATNNLVG------VVP--V 222
             P  + N T LK +    +N    E+P + I  +P L  L L+ N+ V       + P   
Sbjct:   208 PSSLSNSTNLKWM-DLESNMLSGELPSQVISKMPQLQFLYLSYNHFVSHNNNTNLEPFFA 266

Query:   223 TIFNMSALKEIXXXXXXXXXXXPSRI-DLSLPNVETLNLGINSFSGTIPSSITNSSKLSD 281
             ++ N S L+E+            S +  LS+ N+  ++L  N   G+IP  I+N   L+ 
Sbjct:   267 SLANSSDLQELELAGNSLGGEITSSVRHLSV-NLVQIHLDQNRIHGSIPPEISNLLNLTL 325

Query:   282 LELGENLFSGFIPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNP 341
             L L  NL SG IP  +  L  LE   +++N+LT   P       L +  +L +L V+ N 
Sbjct:   326 LNLSSNLLSGPIPRELCKLSKLERVYLSNNHLTGEIP-----MELGDIPRLGLLDVSRNN 380

Query:   342 LDGILPKSIGNFSLSLETILMANCSISGNIPQXXXXXXXXXXXXXXXXXXTGPIPV-TFS 400
             L G +P S GN S  L  +L+    +SG +PQ                  TG IPV   S
Sbjct:   381 LSGSIPDSFGNLS-QLRRLLLYGNHLSGTVPQSLGKCINLEILDLSHNNLTGTIPVEVVS 439

Query:   401 QLQTLQAF-DLTRNKLAGPITDELCHLARLHSLVLQGNKFSGSIPSCLGNLTSVRVLYLG 459
              L+ L+ + +L+ N L+GPI  EL  +  + S+ L  N+ SG IP  LG+  ++  L L 
Sbjct:   440 NLRNLKLYLNLSSNHLSGPIPLELSKMDMVLSVDLSSNELSGKIPPQLGSCIALEHLNLS 499

Query:   460 LNIFTSVLSSTIWNLKDILFIDVSSNFLDGPLSLDIGNLKVVIGLDFSRNNLSGDIPITI 519
              N F+S L S++  L  +  +DVS N L G +         +  L+FS N LSG++    
Sbjct:   500 RNGFSSTLPSSLGQLPYLKELDVSFNRLTGAIPPSFQQSSTLKHLNFSFNLLSGNVSDK- 558

Query:   520 GEGEIPRGGPFANLTAKSFMGNELLCG-LPDLQVSPCKPNKPNTHKKSRKMLLLVIVLPL 578
                     G F+ LT +SF+G+ LLCG +  +Q   CK      HK    +LL V++  +
Sbjct:   559 --------GSFSKLTIESFLGDSLLCGSIKGMQA--CKKK----HKYP-SVLLPVLLSLI 603

Query:   579 STALIVVVTLTLKWKLIKCWKSRTGPSNDGI--------NSPQAIRRFSYHELLRATDRF 630
             +T ++ V    L  +  +  K+ T  + + +        N P+   R SY +L+ AT  F
Sbjct:   604 ATPVLCVFGYPLVQRS-RFGKNLTVYAKEEVEDEEKQNQNDPK-YPRISYQQLIAATGGF 661

Query:   631 SENNLIGIG-----------NGMEVAVKVFHQQYERALK-SFEDECEVRKRIRHRNLVKI 678
             + ++LIG G           N  +VAVKV   +       SF+ EC++ KR RHRNL++I
Sbjct:   662 NASSLIGSGRFGHVYKGVLRNNTKVAVKVLDPKTALEFSGSFKRECQILKRTRHRNLIRI 721

Query:   679 ISS 681
             I++
Sbjct:   722 ITT 724

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	2.7.11.1	0.824
3rd Layer	2.7.11	0.766

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	823
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-77
cd00180	215	cd00180, PKc, Catalytic domain of Protein Kinases	3e-20
smart00220	254	smart00220, S_TKc, Serine/Threonine protein kinase	4e-19
pfam07714	258	pfam07714, Pkinase_Tyr, Protein tyrosine kinase	8e-19
pfam00069	260	pfam00069, Pkinase, Protein kinase domain	9e-19
cd06606	260	cd06606, STKc_MAPKKK, Catalytic domain of the Prot	4e-18
smart00219	257	smart00219, TyrKc, Tyrosine kinase, catalytic doma	2e-16
cd00192	262	cd00192, PTKc, Catalytic domain of Protein Tyrosin	2e-15
smart00221	258	smart00221, STYKc, Protein kinase; unclassified sp	3e-15
cd05578	258	cd05578, STKc_Yank1, Catalytic domain of the Prote	3e-15
cd05123	250	cd05123, STKc_AGC, Catalytic domain of AGC family	2e-14
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-13
cd08215	258	cd08215, STKc_Nek, Catalytic domain of the Protein	1e-12
cd05039	256	cd05039, PTKc_Csk_like, Catalytic domain of C-term	1e-12
COG0515	384	COG0515, SPS1, Serine/threonine protein kinase [Ge	4e-12
cd05122	253	cd05122, PKc_STE, Catalytic domain of STE family P	5e-12
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-11
cd05148	261	cd05148, PTKc_Srm_Brk, Catalytic domain of the Pro	3e-11
cd06621	287	cd06621, PKc_MAPKK_Pek1_like, Catalytic domain of	4e-11
cd06623	264	cd06623, PKc_MAPKK_plant_like, Catalytic domain of	7e-11
cd05581	280	cd05581, STKc_PDK1, Catalytic domain of the Protei	8e-11
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	1e-10
cd05034	261	cd05034, PTKc_Src_like, Catalytic domain of Src ki	4e-10
cd06614	286	cd06614, STKc_PAK, Catalytic domain of the Protein	4e-10
cd06626	264	cd06626, STKc_MEKK4, Catalytic domain of the Prote	5e-10
cd07855	334	cd07855, STKc_ERK5, Catalytic domain of the Serine	5e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	7e-10
cd06612	256	cd06612, STKc_MST1_2, Catalytic domain of the Prot	7e-10
cd05069	260	cd05069, PTKc_Yes, Catalytic domain of the Protein	8e-10
cd05577	277	cd05577, STKc_GRK, Catalytic domain of the Protein	1e-09
cd06605	265	cd06605, PKc_MAPKK, Catalytic domain of the dual-s	1e-09
cd07832	286	cd07832, STKc_CCRK, Catalytic domain of the Serine	2e-09
cd05048	283	cd05048, PTKc_Ror, Catalytic Domain of the Protein	2e-09
cd06618	296	cd06618, PKc_MKK7, Catalytic domain of the dual-sp	3e-09
cd05090	283	cd05090, PTKc_Ror1, Catalytic domain of the Protei	3e-09
cd05071	262	cd05071, PTKc_Src, Catalytic domain of the Protein	3e-09
cd05582	318	cd05582, STKc_RSK_N, N-terminal catalytic domain o	4e-09
cd05032	277	cd05032, PTKc_InsR_like, Catalytic domain of Insul	4e-09
cd06610	267	cd06610, STKc_OSR1_SPAK, Catalytic domain of the P	6e-09
cd05038	284	cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domai	7e-09
cd05070	260	cd05070, PTKc_Fyn_Yrk, Catalytic domain of the Pro	7e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	9e-09
cd06617	283	cd06617, PKc_MKK3_6, Catalytic domain of the dual-	2e-08
cd06627	254	cd06627, STKc_Cdc7_like, Catalytic domain of Cell	2e-08
cd05082	256	cd05082, PTKc_Csk, Catalytic domain of the Protein	2e-08
TIGR03903	1266	TIGR03903, TOMM_kin_cyc, TOMM system kinase/cyclas	2e-08
cd07829	282	cd07829, STKc_CDK_like, Catalytic domain of Cyclin	2e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-08
cd05068	261	cd05068, PTKc_Frk_like, Catalytic domain of Fyn-re	3e-08
cd07833	288	cd07833, STKc_CDKL, Catalytic domain of Cyclin-Dep	3e-08
cd05083	254	cd05083, PTKc_Chk, Catalytic domain of the Protein	3e-08
cd08217	265	cd08217, STKc_Nek2, Catalytic domain of the Protei	4e-08
cd07852	337	cd07852, STKc_MAPK15, Catalytic domain of the Seri	4e-08
cd05060	257	cd05060, PTKc_Syk_like, Catalytic domain of Spleen	5e-08
cd06917	277	cd06917, STKc_NAK1_like, Catalytic domain of Funga	5e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-08
cd05118	283	cd05118, STKc_CMGC, Catalytic domain of CMGC famil	6e-08
cd06647	293	cd06647, STKc_PAK_I, Catalytic domain of the Prote	6e-08
PLN00034	353	PLN00034, PLN00034, mitogen-activated protein kina	7e-08
cd07847	286	cd07847, STKc_CDKL1_4, Catalytic domain of the Ser	7e-08
cd07834	330	cd07834, STKc_MAPK, Catalytic domain of the Serine	7e-08
cd05052	263	cd05052, PTKc_Abl, Catalytic domain of the Protein	8e-08
cd05579	265	cd05579, STKc_MAST_like, Catalytic domain of Micro	8e-08
cd05580	290	cd05580, STKc_PKA, Catalytic domain of the Protein	1e-07
cd06624	268	cd06624, STKc_ASK, Catalytic domain of the Protein	1e-07
cd05612	291	cd05612, STKc_PRKX_like, Catalytic domain of PRKX-	1e-07
cd07851	343	cd07851, STKc_p38, Catalytic domain of the Serine/	2e-07
cd05575	323	cd05575, STKc_SGK, Catalytic domain of the Protein	2e-07
cd07840	287	cd07840, STKc_CDK9_like, Catalytic domain of Cycli	2e-07
cd05059	256	cd05059, PTKc_Tec_like, Catalytic domain of Tec-li	2e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-07
cd06607	307	cd06607, STKc_TAO, Catalytic domain of the Protein	3e-07
cd05081	284	cd05081, PTKc_Jak2_Jak3_rpt2, Catalytic (repeat 2)	3e-07
cd05608	280	cd05608, STKc_GRK1, Catalytic domain of the Protei	3e-07
cd05572	262	cd05572, STKc_cGK_PKG, Catalytic domain of the Pro	3e-07
cd05089	297	cd05089, PTKc_Tie1, Catalytic domain of the Protei	3e-07
cd05112	256	cd05112, PTKc_Itk, Catalytic domain of the Protein	3e-07
cd07838	287	cd07838, STKc_CDK4_6_like, Catalytic domain of Cyc	3e-07
cd08529	256	cd08529, STKc_FA2-like, Catalytic domain of the Pr	4e-07
cd05053	293	cd05053, PTKc_FGFR, Catalytic domain of the Protei	4e-07
cd05044	269	cd05044, PTKc_c-ros, Catalytic domain of the Prote	4e-07
cd05084	252	cd05084, PTKc_Fes, Catalytic domain of the Protein	5e-07
cd08220	256	cd08220, STKc_Nek8, Catalytic domain of the Protei	5e-07
cd05100	334	cd05100, PTKc_FGFR3, Catalytic domain of the Prote	5e-07
cd06654	296	cd06654, STKc_PAK1, Catalytic domain of the Protei	5e-07
cd05062	277	cd05062, PTKc_IGF-1R, Catalytic domain of the Prot	5e-07
cd08528	269	cd08528, STKc_Nek10, Catalytic domain of the Prote	6e-07
cd05045	290	cd05045, PTKc_RET, Catalytic domain of the Protein	7e-07
cd05040	257	cd05040, PTKc_Ack_like, Catalytic domain of the Pr	7e-07
pfam08263	42	pfam08263, LRRNT_2, Leucine rich repeat N-terminal	7e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	8e-07
cd05607	277	cd05607, STKc_GRK7, Catalytic domain of the Protei	8e-07
cd06629	272	cd06629, STKc_MAPKKK_Bck1_like, Catalytic domain o	8e-07
cd06616	288	cd06616, PKc_MKK4, Catalytic domain of the dual-sp	9e-07
cd06620	284	cd06620, PKc_MAPKK_Byr1_like, Catalytic domain of	9e-07
cd05047	270	cd05047, PTKc_Tie, Catalytic domain of Tie Protein	1e-06
cd05049	280	cd05049, PTKc_Trk, Catalytic domain of the Protein	1e-06
cd07857	332	cd07857, STKc_MPK1, Catalytic domain of the Serine	1e-06
cd08223	257	cd08223, STKc_Nek4, Catalytic domain of the Protei	1e-06
cd05099	314	cd05099, PTKc_FGFR4, Catalytic domain of the Prote	1e-06
cd05101	304	cd05101, PTKc_FGFR2, Catalytic domain of the Prote	1e-06
cd06628	267	cd06628, STKc_MAPKKK_Byr2_like, Catalytic domain o	2e-06
cd06656	297	cd06656, STKc_PAK3, Catalytic domain of the Protei	2e-06
cd05098	307	cd05098, PTKc_FGFR1, Catalytic domain of the Prote	2e-06
PTZ00263	329	PTZ00263, PTZ00263, protein kinase A catalytic sub	2e-06
cd05584	323	cd05584, STKc_p70S6K, Catalytic domain of the Prot	2e-06
cd05116	257	cd05116, PTKc_Syk, Catalytic domain of the Protein	2e-06
cd05057	279	cd05057, PTKc_EGFR_like, Catalytic domain of Epide	2e-06
cd06640	277	cd06640, STKc_MST4, Catalytic domain of the Protei	2e-06
cd07853	372	cd07853, STKc_NLK, Catalytic domain of the Serine/	2e-06
cd05072	261	cd05072, PTKc_Lyn, Catalytic domain of the Protein	2e-06
cd07865	310	cd07865, STKc_CDK9, Catalytic domain of the Serine	2e-06
cd06613	262	cd06613, STKc_MAP4K3_like, Catalytic domain of Mit	2e-06
cd05092	280	cd05092, PTKc_TrkA, Catalytic domain of the Protei	2e-06
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	3e-06
cd05604	325	cd05604, STKc_SGK3, Catalytic domain of the Protei	3e-06
cd05067	260	cd05067, PTKc_Lck_Blk, Catalytic domain of the Pro	3e-06
cd07849	336	cd07849, STKc_ERK1_2_like, Catalytic domain of Ext	3e-06
cd05073	260	cd05073, PTKc_Hck, Catalytic domain of the Protein	3e-06
cd05091	283	cd05091, PTKc_Ror2, Catalytic domain of the Protei	3e-06
cd06648	285	cd06648, STKc_PAK_II, Catalytic domain of the Prot	3e-06
cd07856	328	cd07856, STKc_Sty1_Hog1, Catalytic domain of the S	4e-06
cd08221	256	cd08221, STKc_Nek9, Catalytic domain of the Protei	4e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-06
cd07863	288	cd07863, STKc_CDK4, Catalytic domain of the Serine	5e-06
cd05630	285	cd05630, STKc_GRK6, Catalytic domain of the Protei	5e-06
cd05080	283	cd05080, PTKc_Tyk2_rpt2, Catalytic (repeat 2) doma	5e-06
cd07858	337	cd07858, STKc_TEY_MAPK_plant, Catalytic domain of	5e-06
cd05115	257	cd05115, PTKc_Zap-70, Catalytic domain of the Prot	5e-06
cd05041	251	cd05041, PTKc_Fes_like, Catalytic domain of Fes-li	5e-06
cd07842	316	cd07842, STKc_CDK8_like, Catalytic domain of Cycli	5e-06
cd06659	297	cd06659, STKc_PAK6, Catalytic domain of the Protei	6e-06
cd07878	343	cd07878, STKc_p38beta_MAPK11, Catalytic domain of	6e-06
cd06641	277	cd06641, STKc_MST3, Catalytic domain of the Protei	6e-06
cd05606	278	cd05606, STKc_beta_ARK, Catalytic domain of the Pr	7e-06
cd06655	296	cd06655, STKc_PAK2, Catalytic domain of the Protei	7e-06
cd07860	284	cd07860, STKc_CDK2_3, Catalytic domain of the Seri	8e-06
cd06632	258	cd06632, STKc_MEKK1_plant, Catalytic domain of the	8e-06
cd08530	256	cd08530, STKc_CNK2-like, Catalytic domain of the P	9e-06
cd07854	342	cd07854, STKc_MAPK4_6, Catalytic domain of the Ser	9e-06
cd05111	279	cd05111, PTK_HER3, Pseudokinase domain of the Prot	1e-05
cd07841	298	cd07841, STKc_CDK7, Catalytic domain of the Serine	1e-05
cd05583	288	cd05583, STKc_MSK_N, N-terminal catalytic domain o	1e-05
cd06644	292	cd06644, STKc_STK10_LOK, Catalytic domain of the P	1e-05
cd05632	285	cd05632, STKc_GRK5, Catalytic domain of the Protei	1e-05
cd05050	288	cd05050, PTKc_Musk, Catalytic domain of the Protei	1e-05
cd05633	279	cd05633, STKc_GRK3, Catalytic domain of the Protei	1e-05
cd05036	277	cd05036, PTKc_ALK_LTK, Catalytic domain of the Pro	1e-05
cd05094	291	cd05094, PTKc_TrkC, Catalytic domain of the Protei	1e-05
cd05605	285	cd05605, STKc_GRK4_like, Catalytic domain of G pro	1e-05
cd07877	345	cd07877, STKc_p38alpha_MAPK14, Catalytic domain of	2e-05
cd05061	288	cd05061, PTKc_InsR, Catalytic domain of the Protei	2e-05
cd05097	295	cd05097, PTKc_DDR_like, Catalytic domain of Discoi	2e-05
cd07843	293	cd07843, STKc_CDC2L1, Catalytic domain of the Seri	2e-05
cd06642	277	cd06642, STKc_STK25-YSK1, Catalytic domain of the	2e-05
cd05088	303	cd05088, PTKc_Tie2, Catalytic domain of the Protei	2e-05
cd06611	280	cd06611, STKc_SLK_like, Catalytic domain of Ste20-	2e-05
cd06658	292	cd06658, STKc_PAK5, Catalytic domain of the Protei	2e-05
cd07862	290	cd07862, STKc_CDK6, Catalytic domain of the Serine	2e-05
cd06615	308	cd06615, PKc_MEK, Catalytic domain of the dual-spe	3e-05
cd05592	316	cd05592, STKc_nPKC_theta_delta, Catalytic domain o	3e-05
cd06634	308	cd06634, STKc_TAO2, Catalytic domain of the Protei	3e-05
cd07835	283	cd07835, STKc_CDK1_like, Catalytic domain of Cycli	3e-05
cd05113	256	cd05113, PTKc_Btk_Bmx, Catalytic domain of the Pro	3e-05
cd07846	286	cd07846, STKc_CDKL2_3, Catalytic domain of the Ser	3e-05
cd06635	317	cd06635, STKc_TAO1, Catalytic domain of the Protei	3e-05
cd06609	274	cd06609, STKc_MST3_like, Catalytic domain of Mamma	3e-05
cd07850	353	cd07850, STKc_JNK, Catalytic domain of the Serine/	4e-05
cd05074	273	cd05074, PTKc_Tyro3, Catalytic domain of the Prote	4e-05
cd05096	304	cd05096, PTKc_DDR1, Catalytic domain of the Protei	5e-05
cd07837	295	cd07837, STKc_CdkB_plant, Catalytic domain of the	5e-05
cd08222	260	cd08222, STKc_Nek11, Catalytic domain of the Prote	5e-05
PTZ00267	478	PTZ00267, PTZ00267, NIMA-related protein kinase; P	6e-05
cd05102	338	cd05102, PTKc_VEGFR3, Catalytic domain of the Prot	7e-05
cd06633	313	cd06633, STKc_TAO3, Catalytic domain of the Protei	7e-05
cd05093	288	cd05093, PTKc_TrkB, Catalytic domain of the Protei	8e-05
cd07848	287	cd07848, STKc_CDKL5, Catalytic domain of the Serin	8e-05
cd05065	269	cd05065, PTKc_EphR_B, Catalytic domain of the Prot	8e-05
cd07876	359	cd07876, STKc_JNK2, Catalytic domain of the Serine	8e-05
cd05035	273	cd05035, PTKc_Axl_like, Catalytic Domain of Axl-li	8e-05
cd05603	321	cd05603, STKc_SGK2, Catalytic domain of the Protei	8e-05
PHA02882	294	PHA02882, PHA02882, putative serine/threonine kina	8e-05
cd06619	279	cd06619, PKc_MKK5, Catalytic domain of the dual-sp	9e-05
cd05054	337	cd05054, PTKc_VEGFR, Catalytic domain of the Prote	9e-05
cd05085	250	cd05085, PTKc_Fer, Catalytic domain of the Protein	1e-04
cd07861	285	cd07861, STKc_CDK1_euk, Catalytic domain of the Se	1e-04
cd05095	296	cd05095, PTKc_DDR2, Catalytic domain of the Protei	1e-04
cd05075	272	cd05075, PTKc_Axl, Catalytic domain of the Protein	1e-04
cd05105	400	cd05105, PTKc_PDGFR_alpha, Catalytic domain of the	1e-04
cd05103	343	cd05103, PTKc_VEGFR2, Catalytic domain of the Prot	1e-04
cd05055	302	cd05055, PTKc_PDGFR, Catalytic domain of the Prote	1e-04
cd05033	266	cd05033, PTKc_EphR, Catalytic domain of Ephrin Rec	1e-04
cd05620	316	cd05620, STKc_nPKC_delta, Catalytic domain of the	1e-04
cd05619	316	cd05619, STKc_nPKC_theta, Catalytic domain of the	2e-04
cd08229	267	cd08229, STKc_Nek7, Catalytic domain of the Protei	2e-04
cd06625	263	cd06625, STKc_MEKK3_like, Catalytic domain of MAP/	2e-04
cd06657	292	cd06657, STKc_PAK4, Catalytic domain of the Protei	2e-04
cd05570	318	cd05570, STKc_PKC, Catalytic domain of the Protein	2e-04
cd05573	350	cd05573, STKc_ROCK_NDR_like, Catalytic domain of R	2e-04
cd05613	290	cd05613, STKc_MSK1_N, N-terminal catalytic domain	2e-04
cd07880	343	cd07880, STKc_p38gamma_MAPK12, Catalytic domain of	2e-04
cd08228	267	cd08228, STKc_Nek6, Catalytic domain of the Protei	2e-04
cd05066	267	cd05066, PTKc_EphR_A, Catalytic domain of the Prot	2e-04
cd07879	342	cd07879, STKc_p38delta_MAPK13, Catalytic domain of	2e-04
cd08224	267	cd08224, STKc_Nek6_Nek7, Catalytic domain of the P	2e-04
PTZ00426	340	PTZ00426, PTZ00426, cAMP-dependent protein kinase	2e-04
cd05631	285	cd05631, STKc_GRK4, Catalytic domain of the Protei	2e-04
cd05063	268	cd05063, PTKc_EphR_A2, Catalytic domain of the Pro	3e-04
cd07875	364	cd07875, STKc_JNK1, Catalytic domain of the Serine	3e-04
cd05571	323	cd05571, STKc_PKB, Catalytic domain of the Protein	3e-04
PRK13184	932	PRK13184, pknD, serine/threonine-protein kinase; R	3e-04
cd05058	262	cd05058, PTKc_Met_Ron, Catalytic domain of the Pro	4e-04
cd06645	267	cd06645, STKc_MAP4K3, Catalytic domain of the Prot	4e-04
cd05056	270	cd05056, PTKc_FAK, Catalytic domain of the Protein	4e-04
cd05107	401	cd05107, PTKc_PDGFR_beta, Catalytic domain of the	4e-04
cd05593	328	cd05593, STKc_PKB_gamma, Catalytic domain of the P	4e-04
cd05614	332	cd05614, STKc_MSK2_N, N-terminal catalytic domain	5e-04
cd05114	256	cd05114, PTKc_Tec_Rlk, Catalytic domain of the Pro	5e-04
cd06630	268	cd06630, STKc_MEKK1, Catalytic domain of the Prote	6e-04
cd07845	309	cd07845, STKc_CDK10, Catalytic domain of the Serin	6e-04
cd07874	355	cd07874, STKc_JNK3, Catalytic domain of the Serine	6e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	7e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	7e-04
cd05595	323	cd05595, STKc_PKB_beta, Catalytic domain of the Pr	7e-04
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	7e-04
cd06649	331	cd06649, PKc_MEK2, Catalytic domain of the dual-sp	7e-04
cd05600	333	cd05600, STKc_Sid2p_Dbf2p, Catalytic domain of Fun	8e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.001
cd05587	324	cd05587, STKc_cPKC, Catalytic domain of the Protei	0.001
cd05602	325	cd05602, STKc_SGK1, Catalytic domain of the Protei	0.001
cd05108	316	cd05108, PTKc_EGFR, Catalytic domain of the Protei	0.001
cd05109	279	cd05109, PTKc_HER2, Catalytic domain of the Protei	0.002
cd05609	305	cd05609, STKc_MAST, Catalytic domain of the Protei	0.002
cd08225	257	cd08225, STKc_Nek5, Catalytic domain of the Protei	0.002
PHA03209	357	PHA03209, PHA03209, serine/threonine kinase US3; P	0.002
cd05574	316	cd05574, STKc_phototropin_like, Catalytic domain o	0.002
PTZ00283	496	PTZ00283, PTZ00283, serine/threonine protein kinas	0.002
cd08218	256	cd08218, STKc_Nek1, Catalytic domain of the Protei	0.002
cd07867	317	cd07867, STKc_CDC2L6, Catalytic domain of Serine/T	0.002
cd06643	282	cd06643, STKc_SLK, Catalytic domain of the Protein	0.003
PLN00009	294	PLN00009, PLN00009, cyclin-dependent kinase A; Pro	0.003
cd05586	330	cd05586, STKc_Sck1_like, Catalytic domain of Suppr	0.003
cd05043	280	cd05043, PTK_Ryk, Pseudokinase domain of Ryk (Rece	0.003
cd07868	317	cd07868, STKc_CDK8, Catalytic domain of the Serine	0.003
cd06650	333	cd06650, PKc_MEK1, Catalytic domain of the dual-sp	0.003
cd07859	338	cd07859, STKc_TDY_MAPK_plant, Catalytic domain of	0.003
cd07864	302	cd07864, STKc_CDK12, Catalytic domain of the Serin	0.004
cd05051	296	cd05051, PTKc_DDR, Catalytic domain of the Protein	0.004
cd05611	260	cd05611, STKc_Rim15_like, Catalytic domain of fung	0.004

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  268 bits (687), Expect = 6e-77
 Identities = 244/872 (27%), Positives = 381/872 (43%), Gaps = 159/872 (18%)

Query: 14  LLALKAHISYDHTNLFARNWTSSTSVCIWIGITCDVNSHRVIGL---------------- 57
           LL+ K+ I+     L   NW SS  VC+W GITC+ NS RV+ +                
Sbjct: 34  LLSFKSSINDPLKYLS--NWNSSADVCLWQGITCN-NSSRVVSIDLSGKNISGKISSAIF 90

Query: 58  --------NISSFNLQGTITPQL-----------------------GNLSSLQTLDLSHN 86
                   N+S+  L G I   +                       G++ +L+TLDLS+N
Sbjct: 91  RLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNN 150

Query: 87  KLSGNIPSSIFNMHTLKLLDFSDNQLFGSLSSFIFNMSSMTTIDLSINRLSGELPANICK 146
            LSG IP+ I +  +LK+LD   N L G + + + N++S+  + L+ N+L G+       
Sbjct: 151 MLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQ------- 203

Query: 147 IPSTLSKCKQLEELNLGFNNLSGAIPKEIGNLTKLKEIISTITNSTVCEIPREIGNLPYL 206
           IP  L + K L+ + LG+NNLSG IP EIG LT L   +  + N+    IP  +GNL  L
Sbjct: 204 IPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNH-LDLVYNNLTGPIPSSLGNLKNL 262

Query: 207 ARLALATNNLVGVVPVTIFNMSALKEISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFS 266
             L L  N L G +P +IF++  L  + L +NSLSG +P  + + L N+E L+L  N+F+
Sbjct: 263 QYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELV-IQLQNLEILHLFSNNFT 321

Query: 267 GTIPSSITNSSKLSDLELGENLFSGFIPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSL 326
           G IP ++T+  +L  L+L  N FSG IP  +G   NL   +++ N LT   PE      L
Sbjct: 322 GKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPE-----GL 376

Query: 327 TNCKKLKVLIVTGNPLDGILPKSIGNFSLSLETILMANCSISGNIPQVVGNLSNLLVLEL 386
            +   L  LI+  N L+G +PKS+G    SL  + + + S SG +P     L  +  L++
Sbjct: 377 CSSGNLFKLILFSNSLEGEIPKSLGACR-SLRRVRLQDNSFSGELPSEFTKLPLVYFLDI 435

Query: 387 GGNNLTGPIPVTFSQLQTLQAFDLTRNKLAGPITDELCHLARLHSLVLQGNKFSGSIPSC 446
             NNL G I      + +LQ   L RNK  G + D      RL +L L  N+FSG++P  
Sbjct: 436 SNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPD-SFGSKRLENLDLSRNQFSGAVPRK 494

Query: 447 LGNLTSVRVLYLGLNIFTSVLSSTIWNLKDILFIDVSSNFLDGPLSLDIGNLKVVIGLDF 506
           LG+L+ +  L L  N  +  +   + + K ++ +D+S N L G +      + V+  LD 
Sbjct: 495 LGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDL 554

Query: 507 SRNNLSGDIPITIG---------------EGEIPRGGPFANLTAKSFMGNELLC------ 545
           S+N LSG+IP  +G                G +P  G F  + A +  GN  LC      
Sbjct: 555 SQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGDTTS 614

Query: 546 GLPDLQVSPCKP-NKPNTHKKSRKMLLLVIVLPLSTALIVVVTLTLKWKLIKCWKSRTGP 604
           GLP     PCK   K  +        L   ++    A   V         +K  ++  G 
Sbjct: 615 GLP-----PCKRVRKTPSWWFYITCTLGAFLVLALVAFGFVFIRGRNNLELKRVENEDGT 669

Query: 605 SNDGINSPQAIRRFSYHELLRATDRFSENNLI------------GIGNGMEVAVKVFHQQ 652
                   +  +  + +++L +     E N+I             I NGM+  VK  +  
Sbjct: 670 WELQFFDSKVSKSITINDILSSL---KEENVISRGKKGASYKGKSIKNGMQFVVKEINDV 726

Query: 653 YERALKSFEDECEVRKRIRHRNLVKI---------------------------------- 678
                    D      +++H N+VK+                                  
Sbjct: 727 NSIPSSEIAD----MGKLQHPNIVKLIGLCRSEKGAYLIHEYIEGKNLSEVLRNLSWERR 782

Query: 679 ------ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQ 732
                 I+ +L +LH   S  ++  +L P  +++D     H+        LS    L   
Sbjct: 783 RKIAIGIAKALRFLHCRCSPAVVVGNLSPEKIIIDGKDEPHL-------RLSLPGLLCTD 835

Query: 733 TQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
           T+   +  Y+APE      ++ + D+  FG+I
Sbjct: 836 TKCFISSAYVAPETRETKDITEKSDIYGFGLI 867

Length = 968

>gnl|CDD|173623 cd00180, PKc, Catalytic domain of Protein Kinases

 Score = 89.6 bits (223), Expect = 3e-20
 Identities = 50/170 (29%), Positives = 72/170 (42%), Gaps = 46/170 (27%)

Query: 639 GNGMEVAVKVFHQQYE-RALKSFEDECEVRKRIRHRNLVKIISSS---------LEYLHF 688
             G +VA+K+  ++     L+    E E+ K++ H N+VK+             +EY   
Sbjct: 16  KTGKKVAIKIIKKEDSSSLLEELLREIEILKKLNHPNIVKLYGVFEDENHLYLVMEYCEG 75

Query: 689 G--------------------------------HSIPIIHCDLKPSNVLLDED-MVAHIS 715
           G                                HS  IIH DLKP N+LLD D     ++
Sbjct: 76  GSLKDLLKENEGKLSEDEILRILLQILEGLEYLHSNGIIHRDLKPENILLDSDNGKVKLA 135

Query: 716 DFGIAKLLSGEDQLSKQTQTLATIGYMAPE-YGTKGRVSTRGDVCSFGII 764
           DFG++KLL+ +  L K      T  YMAPE    KG  S + D+ S G+I
Sbjct: 136 DFGLSKLLTSDKSLLKTIV--GTPAYMAPEVLLGKGYYSEKSDIWSLGVI 183

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which one kinase activates a second kinase, which in turn, may act on other kinases; this sequential action transmits a signal from the cell surface to target proteins, which results in cellular responses. The PK family is one of the largest known protein families with more than 100 homologous yeast enzymes and 550 human proteins. A fraction of PK family members are pseudokinases that lack crucial residues for catalytic activity. The mutiplicity of kinases allows for specific regulation according to substrate, tissue distribution, and cellular localization. PKs regulate many cellular processes including proliferation, division, differentiation, motility, survival, metabolism, cell-cycle progression, cytoskeletal rearrangement, immunity, and neuronal functions. Many kinases are implicated in the development of various human diseases including different types of cancer. Length = 215

>gnl|CDD|214567 smart00220, S_TKc, Serine/Threonine protein kinases, catalytic domain

 Score = 87.6 bits (218), Expect = 4e-19
 Identities = 47/171 (27%), Positives = 73/171 (42%), Gaps = 50/171 (29%)

Query: 638 IGNGMEVAVKVFH-QQYERALKSFEDECEVRKRIRHRNLVKI------------------ 678
              G  VA+KV   ++ ++  +    E ++ K+++H N+V++                  
Sbjct: 21  KKTGKLVAIKVIKKKKIKKDRERILREIKILKKLKHPNIVRLYDVFEDEDKLYLVMEYCE 80

Query: 679 -------------------------ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAH 713
                                    I S+LEYLH   S  I+H DLKP N+LLDED    
Sbjct: 81  GGDLFDLLKKRGRLSEDEARFYLRQILSALEYLH---SKGIVHRDLKPENILLDEDGHVK 137

Query: 714 ISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
           ++DFG+A+ L   ++L   T  + T  YMAPE           D+ S G+I
Sbjct: 138 LADFGLARQLDPGEKL---TTFVGTPEYMAPEVLLGKGYGKAVDIWSLGVI 185

Phosphotransferases. Serine or threonine-specific kinase subfamily. Length = 254

>gnl|CDD|219530 pfam07714, Pkinase_Tyr, Protein tyrosine kinase

 Score = 86.8 bits (216), Expect = 8e-19
 Identities = 44/181 (24%), Positives = 74/181 (40%), Gaps = 53/181 (29%)

Query: 639 GNGMEVAVKVFHQQY-ERALKSFEDECEVRKRIRHRNLVKI------------------- 678
           G   +VAVK   +   E   + F +E  + K++ H N+V++                   
Sbjct: 26  GTETKVAVKTLKEGASEEEREEFLEEASIMKKLSHPNIVRLLGVCTQGEPLYIVTEYMPG 85

Query: 679 -------------------------ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAH 713
                                    I+  +EYL    S   +H DL   N L+ E++V  
Sbjct: 86  GDLLDFLRKHGEKLTLKDLLQMALQIAKGMEYLE---SKNFVHRDLAARNCLVTENLVVK 142

Query: 714 ISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFG-----IISGGK 768
           ISDFG+++ +  +D   K+      I +MAPE    G+ +++ DV SFG     I + G+
Sbjct: 143 ISDFGLSRDIYEDDYYRKRGGGKLPIKWMAPESLKDGKFTSKSDVWSFGVLLWEIFTLGE 202

Query: 769 E 769
           +
Sbjct: 203 Q 203

Length = 258

>gnl|CDD|215690 pfam00069, Pkinase, Protein kinase domain

 Score = 86.5 bits (215), Expect = 9e-19
 Identities = 50/170 (29%), Positives = 70/170 (41%), Gaps = 45/170 (26%)

Query: 638 IGNGMEVAVKVF--HQQYERALKSFEDECEVRKRIRHRNLVKIISSS---------LEY- 685
            G G  VAVK+     +  +  ++   E  + +R+ H N+V++I +          +EY 
Sbjct: 21  KGTGKIVAVKILKKRSEKSKKDQTARREIRILRRLSHPNIVRLIDAFEDKDHLYLVMEYC 80

Query: 686 ------------------------------LHFGHSIPIIHCDLKPSNVLLDEDMVAHIS 715
                                         L + HS  IIH DLKP N+LLDE+ V  I+
Sbjct: 81  EGGDLFDYLSRGGPLSEDEAKKIALQILRGLEYLHSNGIIHRDLKPENILLDENGVVKIA 140

Query: 716 DFGIAKLLSGEDQLSKQTQTLATIGYMAPE-YGTKGRVSTRGDVCSFGII 764
           DFG+AK L      S  T    T  YMAPE          + DV S G+I
Sbjct: 141 DFGLAKKLLKSSS-SLTTFV-GTPWYMAPEVLLGGNGYGPKVDVWSLGVI 188

Length = 260

>gnl|CDD|173724 cd06606, STKc_MAPKKK, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

 Score = 84.5 bits (210), Expect = 4e-18
 Identities = 41/167 (24%), Positives = 60/167 (35%), Gaps = 44/167 (26%)

Query: 640 NGMEVAVKV--FHQQYERALKSFEDECEVRKRIRHRNLVKIISSS-----------LEYL 686
            G  +AVK        E  L++ E E  +   ++H N+V+   S            LEY+
Sbjct: 24  TGELMAVKSVELSGDSEEELEALEREIRILSSLQHPNIVRYYGSERDEEKNTLNIFLEYV 83

Query: 687 HFG-------------------------------HSIPIIHCDLKPSNVLLDEDMVAHIS 715
             G                               HS  I+H D+K +N+L+D D V  ++
Sbjct: 84  SGGSLSSLLKKFGKLPEPVIRKYTRQILEGLAYLHSNGIVHRDIKGANILVDSDGVVKLA 143

Query: 716 DFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFG 762
           DFG AK L   +          T  +MAPE           D+ S G
Sbjct: 144 DFGCAKRLGDIETGEGTGSVRGTPYWMAPEVIRGEEYGRAADIWSLG 190

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKKK5) and ASK2 (or MAPKKK6), MEKK1, MEKK2, MEKK3, MEKK4, as well as plant and fungal MAPKKKs. Also included in this subfamily are the cell division control proteins Schizosaccharomyces pombe Cdc7 and Saccharomyces cerevisiae Cdc15. Length = 260

>gnl|CDD|197581 smart00219, TyrKc, Tyrosine kinase, catalytic domain

 Score = 79.5 bits (197), Expect = 2e-16
 Identities = 43/169 (25%), Positives = 72/169 (42%), Gaps = 49/169 (28%)

Query: 640 NGMEVAVKVFHQQY-ERALKSFEDECEVRKRIRHRNLVKI-------------------- 678
             +EVAVK   +   E+ ++ F  E  + +++ H N+VK+                    
Sbjct: 27  KKVEVAVKTLKEDASEQQIEEFLREARIMRKLDHPNVVKLLGVCTEEEPLYIVMEYMEGG 86

Query: 679 ------------------------ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHI 714
                                   I+  +EYL    S   IH DL   N L+ E++V  I
Sbjct: 87  DLLSYLRKNRPKLSLSDLLSFALQIARGMEYL---ESKNFIHRDLAARNCLVGENLVVKI 143

Query: 715 SDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGI 763
           SDFG+++ L  +D   ++      I +MAPE   +G+ +++ DV SFG+
Sbjct: 144 SDFGLSRDLY-DDDYYRKRGGKLPIRWMAPESLKEGKFTSKSDVWSFGV 191

Phosphotransferases. Tyrosine-specific kinase subfamily. Length = 257

>gnl|CDD|173624 cd00192, PTKc, Catalytic domain of Protein Tyrosine Kinases

 Score = 77.2 bits (191), Expect = 2e-15
 Identities = 45/177 (25%), Positives = 68/177 (38%), Gaps = 50/177 (28%)

Query: 637 GIGNGMEVAVKVFHQQYERALKS-FEDECEVRKRIRHRNLVKIISSS---------LEYL 686
             G   EVAVK   +      +  F  E  V K++ H N+V+++            LEY+
Sbjct: 19  KDGKTTEVAVKTLKEDASEEERKDFLKEARVMKKLGHPNVVRLLGVCTEEEPLYLVLEYM 78

Query: 687 HFG----------------------------------------HSIPIIHCDLKPSNVLL 706
             G                                         S   +H DL   N L+
Sbjct: 79  EGGDLLDYLRKSRPVFPSPEKSTLSLKDLLSFAIQIAKGMEYLASKKFVHRDLAARNCLV 138

Query: 707 DEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGI 763
            ED+V  ISDFG+++ +  +D   K+T     I +MAPE    G  +++ DV SFG+
Sbjct: 139 GEDLVVKISDFGLSRDVYDDDYYRKKTGGKLPIRWMAPESLKDGIFTSKSDVWSFGV 195

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain, leading to intracellular signaling. Some RTKs are orphan receptors with no known ligands. Non-receptor (or cytoplasmic) tyr kinases are distributed in different intracellular compartments and are usually multi-domain proteins containing a catalytic tyr kinase domain as well as various regulatory domains such as SH3 and SH2. PTKs are usually autoinhibited and require a mechanism for activation. In many PTKs, the phosphorylation of tyr residues in the activation loop is essential for optimal activity. Aberrant expression of PTKs is associated with many development abnormalities and cancers. Length = 262

>gnl|CDD|214568 smart00221, STYKc, Protein kinase; unclassified specificity

 Score = 76.0 bits (188), Expect = 3e-15
 Identities = 46/176 (26%), Positives = 73/176 (41%), Gaps = 50/176 (28%)

Query: 634 NLIGIGNGMEVAVKVFHQQY-ERALKSFEDECEVRKRIRHRNLVKI-------------- 678
              G G  +EVAVK   +   E+ ++ F  E  + +++ H N+VK+              
Sbjct: 21  KGKGDGKEVEVAVKTLKEDASEQQIEEFLREARIMRKLDHPNIVKLLGVCTEEEPLMIVM 80

Query: 679 -------------------------------ISSSLEYLHFGHSIPIIHCDLKPSNVLLD 707
                                          I+  +EYL    S   IH DL   N L+ 
Sbjct: 81  EYMPGGDLLDYLRKNRPKELSLSDLLSFALQIARGMEYLE---SKNFIHRDLAARNCLVG 137

Query: 708 EDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGI 763
           E++V  ISDFG+++ L  +D   K       I +MAPE   +G+ +++ DV SFG+
Sbjct: 138 ENLVVKISDFGLSRDLY-DDDYYKVKGGKLPIRWMAPESLKEGKFTSKSDVWSFGV 192

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase. Length = 258

>gnl|CDD|173669 cd05578, STKc_Yank1, Catalytic domain of the Protein Serine/Threonine Kinase, Yank1

 Score = 76.2 bits (188), Expect = 3e-15
 Identities = 37/86 (43%), Positives = 46/86 (53%), Gaps = 6/86 (6%)

Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLAT 738
           I  +LEYLH   S  IIH D+KP N+LLDE    HI+DF IA  ++ +      T T  T
Sbjct: 109 IVLALEYLH---SKGIIHRDIKPDNILLDEQGHVHITDFNIATKVTPDTLT---TSTSGT 162

Query: 739 IGYMAPEYGTKGRVSTRGDVCSFGII 764
            GYMAPE   +   S   D  S G+ 
Sbjct: 163 PGYMAPEVLCRQGYSVAVDWWSLGVT 188

Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A. Length = 258

>gnl|CDD|173660 cd05123, STKc_AGC, Catalytic domain of AGC family Protein Serine/Threonine Kinases

 Score = 73.3 bits (181), Expect = 2e-14
 Identities = 36/87 (41%), Positives = 47/87 (54%), Gaps = 7/87 (8%)

Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLA- 737
           I  +LEYLH   S+ II+ DLKP N+LLD D    ++DFG+AK LS E     +T T   
Sbjct: 102 IVLALEYLH---SLGIIYRDLKPENILLDADGHIKLTDFGLAKELSSEGS---RTNTFCG 155

Query: 738 TIGYMAPEYGTKGRVSTRGDVCSFGII 764
           T  Y+APE           D  S G++
Sbjct: 156 TPEYLAPEVLLGKGYGKAVDWWSLGVL 182

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the turn motif. Phosphorylation at the A-loop is required of most AGC kinases, which results in a disorder-to-order transition of the A-loop. The ordered conformation results in the access of substrates and ATP to the active site. A subset of AGC kinases with C-terminal extensions containing the HM also requires phosphorylation at this site. Phosphorylation at the HM allows the C-terminal extension to form an ordered structure that packs into the hydrophobic pocket of the catalytic domain, which then reconfigures the kinase into an active bi-lobed state. In addition, growth factor-activated AGC kinases such as PKB, p70S6K, RSK, MSK, PKC, and SGK, require phosphorylation at the turn motif (also called tail or zipper site), located N-terminal to the HM at the C-terminal extension. AGC kinases regulate many cellular processes including division, growth, survival, metabolism, motility, and differentiation. Many are implicated in the development of various human diseases. Length = 250

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 73.7 bits (181), Expect = 2e-13
 Identities = 52/193 (26%), Positives = 81/193 (41%), Gaps = 38/193 (19%)

Query: 42  WIGITC---DVNSHRVI-GLNISSFNLQGTITPQLGNLSSLQTLDLSHNKLSGNIPSSIF 97
           W G  C          I GL + +  L+G I   +  L  LQ+++LS N + GNIP S  
Sbjct: 404 WSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPS-- 461

Query: 98  NMHTLKLLDFSDNQLFGSLSSFIFNMSSMTTIDLSINRLSGELPANICKIPSTLSKCKQL 157
                           G       +++S+  +DLS N  +G        IP +L +   L
Sbjct: 462 ---------------LG-------SITSLEVLDLSYNSFNGS-------IPESLGQLTSL 492

Query: 158 EELNLGFNNLSGAIPKEIGNLTKLKEIISTITNSTVCEIP--REIG-NLPYLARLALATN 214
             LNL  N+LSG +P  +G     +   +   N+ +C IP  R  G +L   A++ +A  
Sbjct: 493 RILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACGPHLSVGAKIGIAFG 552

Query: 215 NLVGVVPVTIFNM 227
             V  + + I  M
Sbjct: 553 VSVAFLFLVICAM 565

Length = 623

>gnl|CDD|173755 cd08215, STKc_Nek, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

 Score = 68.3 bits (168), Expect = 1e-12
 Identities = 30/93 (32%), Positives = 47/93 (50%), Gaps = 19/93 (20%)

Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLA- 737
           +  +L+YLH   S  I+H D+KP N+ L  + +  + DFGI+K+LS    L    +T+  
Sbjct: 112 LCLALKYLH---SRKILHRDIKPQNIFLTSNGLVKLGDFGISKVLSSTVDL---AKTVVG 165

Query: 738 TIGYMAPE------YGTKGRVSTRGDVCSFGII 764
           T  Y++PE      Y  K       D+ S G +
Sbjct: 166 TPYYLSPELCQNKPYNYK------SDIWSLGCV 192

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Length = 258

>gnl|CDD|133171 cd05039, PTKc_Csk_like, Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

 Score = 68.6 bits (168), Expect = 1e-12
 Identities = 48/172 (27%), Positives = 73/172 (42%), Gaps = 48/172 (27%)

Query: 635 LIGIGNGMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVKIISSSL---------EY 685
           ++G   G +VAVK   +    A ++F  E  V   +RH NLV+++   L         EY
Sbjct: 23  MLGDYRGQKVAVKCL-KDDSTAAQAFLAEASVMTTLRHPNLVQLLGVVLQGNPLYIVTEY 81

Query: 686 LHFGHSI---------------------------------PIIHCDLKPSNVLLDEDMVA 712
           +  G  +                                   +H DL   NVL+ ED+VA
Sbjct: 82  MAKGSLVDYLRSRGRAVITLAQQLGFALDVCEGMEYLEEKNFVHRDLAARNVLVSEDLVA 141

Query: 713 HISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
            +SDFG+AK    E    + +  L  + + APE   + + ST+ DV SFGI+
Sbjct: 142 KVSDFGLAK----EASQGQDSGKLP-VKWTAPEALREKKFSTKSDVWSFGIL 188

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, resulting in their inactivation. Chk inhibit Src kinases using a noncatalytic mechanism by simply binding to them. As negative regulators of Src kinases, Csk and Chk play important roles in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. Length = 256

>gnl|CDD|223589 COG0515, SPS1, Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

 Score = 68.6 bits (166), Expect = 4e-12
 Identities = 38/116 (32%), Positives = 54/116 (46%), Gaps = 8/116 (6%)

Query: 657 LKSFEDECEVRKRIRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDED-MVAHIS 715
           L+    +   +  +     + I++  L  L + HS  IIH D+KP N+LLD D  V  + 
Sbjct: 85  LEDLLKKIGRKGPLSESEALFILAQILSALEYLHSKGIIHRDIKPENILLDRDGRVVKLI 144

Query: 716 DFGIAKLLSGEDQLSKQTQTLA----TIGYMAPEY---GTKGRVSTRGDVCSFGII 764
           DFG+AKLL      S      +    T GYMAPE     +    S+  D+ S GI 
Sbjct: 145 DFGLAKLLPDPGSTSSIPALPSTSVGTPGYMAPEVLLGLSLAYASSSSDIWSLGIT 200

Length = 384

>gnl|CDD|173659 cd05122, PKc_STE, Catalytic domain of STE family Protein Kinases

 Score = 66.5 bits (163), Expect = 5e-12
 Identities = 30/82 (36%), Positives = 41/82 (50%), Gaps = 8/82 (9%)

Query: 683 LEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLA-TIGY 741
           LEYLH      IIH D+K +N+LL  D    + DFG++  LS     +K   T+  T  +
Sbjct: 111 LEYLHSNG---IIHRDIKAANILLTSDGEVKLIDFGLSAQLS----DTKARNTMVGTPYW 163

Query: 742 MAPEYGTKGRVSTRGDVCSFGI 763
           MAPE         + D+ S GI
Sbjct: 164 MAPEVINGKPYDYKADIWSLGI 185

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPKK, which itself is phosphorylated and activated by a MAPKKK. Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAPKKK to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. Other STE family members include p21-activated kinases (PAKs) and class III myosins, among others. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain, which can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, as well as autophosphorylate the C-terminal motor domain. They play an important role in maintaining the structural integrity of photoreceptor cell microvilli. Length = 253

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 67.1 bits (164), Expect = 2e-11
 Identities = 59/218 (27%), Positives = 82/218 (37%), Gaps = 69/218 (31%)

Query: 384 LELGGNNLTGPIPVTFSQLQTLQAFDLTRNKLAGPITDELCHLARLHSLVLQGNKFSGSI 443
           L L    L G IP   S+L+ LQ+ +L+ N + G I   L  +  L  L L  N F+GSI
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 444 PSCLGNLTSVRVLYLGLNIFTSVLSSTIWNLKDILFIDVSSNFLDGPLSLDIGNLKVVIG 503
           P  LG LTS+R+L                NL                             
Sbjct: 483 PESLGQLTSLRIL----------------NLNG--------------------------- 499

Query: 504 LDFSRNNLSGDIPITIGEGEIPRGGPFANLTAKSFMGNELLCGLPDLQVSPCKPNKPNTH 563
                N+LSG +P  +G G +     F      +F  N  LCG+P L+   C P+     
Sbjct: 500 -----NSLSGRVPAALG-GRLLHRASF------NFTDNAGLCGIPGLR--ACGPHLSVGA 545

Query: 564 KKSRKMLLLVIVLPLSTALIVVVTLTLKWKLIKCWKSR 601
           K       + I   +S A + +V   + W     WK R
Sbjct: 546 K-------IGIAFGVSVAFLFLVICAMCW-----WKRR 571

Length = 623

>gnl|CDD|133248 cd05148, PTKc_Srm_Brk, Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

 Score = 64.4 bits (157), Expect = 3e-11
 Identities = 50/187 (26%), Positives = 76/187 (40%), Gaps = 50/187 (26%)

Query: 640 NGMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNL------------VKIISSSLE--- 684
           N + VA+K+         + F+ E +  KR+RH++L            V II+  +E   
Sbjct: 29  NRVRVAIKILKSDDLLKQQDFQKEVQALKRLRHKHLISLFAVCSVGEPVYIITELMEKGS 88

Query: 685 YLHF-----GHSIP----------------------IIHCDLKPSNVLLDEDMVAHISDF 717
            L F     G  +P                       IH DL   N+L+ ED+V  ++DF
Sbjct: 89  LLAFLRSPEGQVLPVASLIDMACQVAEGMAYLEEQNSIHRDLAARNILVGEDLVCKVADF 148

Query: 718 GIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII------SGGKETR 771
           G+A+L+  +  LS   +      + APE  + G  ST+ DV SFGI+       G     
Sbjct: 149 GLARLIKEDVYLSSDKKI--PYKWTAPEAASHGTFSTKSDVWSFGILLYEMFTYGQVPYP 206

Query: 772 SMTVGET 778
            M   E 
Sbjct: 207 GMNNHEV 213

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Srm and Brk however, lack the N-terminal myristylation sites. Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Brk has been found to be overexpressed in a majority of breast tumors. Length = 261

>gnl|CDD|132952 cd06621, PKc_MAPKK_Pek1_like, Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases

 Score = 64.4 bits (157), Expect = 4e-11
 Identities = 40/102 (39%), Positives = 50/102 (49%), Gaps = 7/102 (6%)

Query: 665 EVRK---RIRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAK 721
           +V+K   RI  + L KI  S L+ L + HS  IIH D+KPSN+LL       + DFG+  
Sbjct: 94  KVKKRGGRIGEKVLGKIAESVLKGLSYLHSRKIIHRDIKPSNILLTRKGQVKLCDFGV-- 151

Query: 722 LLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGI 763
             SGE   S       T  YMAPE       S   DV S G+
Sbjct: 152 --SGELVNSLAGTFTGTSFYMAPERIQGKPYSITSDVWSLGL 191

Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include the MAPKKs Pek1/Skh1 from Schizosaccharomyces pombe and MKK2 from Saccharomyces cerevisiae, and related proteins. Both fission yeast Pek1 and baker's yeast MKK2 are components of the cell integrity MAPK pathway. In fission yeast, Pek1 phosphorylates and activates the MAPK Pmk1/Spm1 and is regulated by the MAPKKK Mkh1. In baker's yeast, the pathway involves the MAPK Slt2, the MAPKKs MKK1 and MKK2, and the MAPKKK Bck1. The cell integrity MAPK cascade is activated by multiple stress conditions, and is essential in cell wall construction, morphogenesis, cytokinesis, and ion homeostasis. Length = 287

>gnl|CDD|132954 cd06623, PKc_MAPKK_plant_like, Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

 Score = 63.4 bits (155), Expect = 7e-11
 Identities = 31/88 (35%), Positives = 45/88 (51%), Gaps = 18/88 (20%)

Query: 683 LEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQT-LATIGY 741
           L+YLH    I  IH D+KPSN+L++      I+DFGI+K+L   +    Q  T + T+ Y
Sbjct: 112 LDYLHTKRHI--IHRDIKPSNLLINSKGEVKIADFGISKVL---ENTLDQCNTFVGTVTY 166

Query: 742 MAPE------YGTKGRVSTRGDVCSFGI 763
           M+PE      Y          D+ S G+
Sbjct: 167 MSPERIQGESYSYA------ADIWSLGL 188

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include MAPKKs from plants, kinetoplastids, alveolates, and mycetozoa. The MAPKK, LmxPK4, from Leishmania mexicana, is important in differentiation and virulence. Dictyostelium discoideum MEK1 is required for proper chemotaxis. MEK1 null mutants display severe defects in cell polarization and directional movement. Plants contain multiple MAPKKs like other eukaryotes. The Arabidopsis genome encodes for 10 MAPKKs while poplar and rice contain 13 MAPKKs each. The functions of these proteins have not been fully elucidated. There is evidence to suggest that MAPK cascades are involved in plant stress responses. In Arabidopsis, MKK3 plays a role in pathogen signaling, MKK2 is involved in cold and salt stress signaling, MKK4/MKK5 participates in innate immunity, and MKK7 regulates basal and systemic acquired resistance. Length = 264

>gnl|CDD|173672 cd05581, STKc_PDK1, Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

 Score = 63.4 bits (155), Expect = 8e-11
 Identities = 35/105 (33%), Positives = 48/105 (45%), Gaps = 23/105 (21%)

Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLAT 738
           I  +LEYLH   S  IIH DLKP N+LLD+DM   I+DFG AK+L   +   +  +  AT
Sbjct: 111 ILLALEYLH---SKGIIHRDLKPENILLDKDMHIKITDFGTAKVL-DPNSSPESNKGDAT 166

Query: 739 IG-------------------YMAPEYGTKGRVSTRGDVCSFGII 764
                                Y++PE   +       D+ + G I
Sbjct: 167 NIDSQIEKNRRRFASFVGTAEYVSPELLNEKPAGKSSDLWALGCI 211

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to autophosphorylate and is constitutively active in mammalian cells. PDK1 is essential for normal embryo development and is important in regulating cell volume. Length = 280

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 64.2 bits (156), Expect = 1e-10
 Identities = 89/366 (24%), Positives = 155/366 (42%), Gaps = 53/366 (14%)

Query: 51  SHRVIGLNISSFNLQGTITPQLGNLSSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDN 110
           S  V  L ++  +    + P   +      L       S +   ++ N+  L  LD + N
Sbjct: 44  SVAVNRLALNLSSNTLLLLPSSLSRLLSLDLLSPSGISSLDGSENLLNLLPLPSLDLNLN 103

Query: 111 QLFGSLSSFIFNMSSMTTIDLSINRLSGELPANICKIPSTLSK-CKQLEELNLGFNNLSG 169
           +L  ++S  +  ++++T++DL  N        NI  IP  +      L+EL+L  N +  
Sbjct: 104 RLRSNIS-ELLELTNLTSLDLDNN--------NITDIPPLIGLLKSNLKELDLSDNKIE- 153

Query: 170 AIPKEIGNLTKLKEIISTITNSTVCEIPREIGNLPYLARLALATNNLVGVVPVTIFNMSA 229
           ++P  + NL  LK +   ++ + + ++P+ + NL  L  L L+ N +   +P  I  +SA
Sbjct: 154 SLPSPLRNLPNLKNL--DLSFNDLSDLPKLLSNLSNLNNLDLSGNKI-SDLPPEIELLSA 210

Query: 230 LKEISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSITNSSKLSDLELGENLF 289
           L+E+ L NNS+                            + SS++N   LS LEL  N  
Sbjct: 211 LEELDLSNNSII--------------------------ELLSSLSNLKNLSGLELSNNKL 244

Query: 290 SGFIPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGILPKS 349
              +P +IGNL NLE  ++++N ++S       +SSL +   L+ L ++GN L   LP  
Sbjct: 245 E-DLPESIGNLSNLETLDLSNNQISS-------ISSLGSLTNLRELDLSGNSLSNALPLI 296

Query: 350 IGNFSLSLETILMANCSISGNIPQVVGNLSNLLVLELGGNNLTGPIPVTFSQLQTLQAFD 409
                L    + +     +      +   S LL   +  N  T   P   S L++L    
Sbjct: 297 ALLLLLLELLLNLLLTLKALE----LKLNSILLNNNILSNGETS-SPEALSILESLNNLW 351

Query: 410 LTRNKL 415
              N L
Sbjct: 352 TLDNAL 357

Length = 394

>gnl|CDD|173626 cd05034, PTKc_Src_like, Catalytic domain of Src kinase-like Protein Tyrosine Kinases

 Score = 60.8 bits (148), Expect = 4e-10
 Identities = 46/171 (26%), Positives = 78/171 (45%), Gaps = 45/171 (26%)

Query: 637 GIGNG-MEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVK------------IIS--- 680
           G  NG  +VAVK   +    + ++F  E ++ K++RH  LV+            I++   
Sbjct: 25  GTWNGTTKVAVKTL-KPGTMSPEAFLQEAQIMKKLRHDKLVQLYAVCSEEEPIYIVTEYM 83

Query: 681 ---SSLEYLHF--GHSIPI----------------------IHCDLKPSNVLLDEDMVAH 713
              S L++L    G  + +                      IH DL   N+L+ E++V  
Sbjct: 84  SKGSLLDFLKSGEGKKLRLPQLVDMAAQIAEGMAYLESRNYIHRDLAARNILVGENLVCK 143

Query: 714 ISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
           I+DFG+A+L+  +D+ + +      I + APE    GR + + DV SFGI+
Sbjct: 144 IADFGLARLIE-DDEYTAREGAKFPIKWTAPEAANYGRFTIKSDVWSFGIL 193

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. They were identified as the first proto-oncogene products, and they regulate cell adhesion, invasion, and motility in cancer cells and tumor vasculature, contributing to cancer progression and metastasis. Src kinases are overexpressed in a variety of human cancers, making them attractive targets for therapy. They are also implicated in acute inflammatory responses and osteoclast function. Src, Fyn, Yes, and Yrk are widely expressed, while Blk, Lck, Hck, Fgr, and Lyn show a limited expression pattern. Length = 261

>gnl|CDD|173728 cd06614, STKc_PAK, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

 Score = 61.1 bits (149), Expect = 4e-10
 Identities = 45/184 (24%), Positives = 69/184 (37%), Gaps = 61/184 (33%)

Query: 641 GMEVAVKVFH--QQYERALKSFEDECEVRKRIRHRNLVKIISSSL---------EY---- 685
           G EVA+K     +Q +  +    +E  + K  +H N+V    S L         EY    
Sbjct: 44  GKEVAIKKMRLRKQNKELII---NEILIMKDCKHPNIVDYYDSYLVGDELWVVMEYMDGG 100

Query: 686 ----------------------------LHFGHSIPIIHCDLKPSNVLLDEDMVAHISDF 717
                                       L + HS  +IH D+K  N+LL +D    ++DF
Sbjct: 101 SLTDIITQNFVRMNEPQIAYVCREVLQGLEYLHSQNVIHRDIKSDNILLSKDGSVKLADF 160

Query: 718 GIAKLLSGEDQLSKQTQTLATI-G---YMAPEYGTKGRVSTRGDVCSFGIISGGKETRSM 773
           G A       QL+K+     ++ G   +MAPE   +     + D+ S GI+        M
Sbjct: 161 GFAA------QLTKEKSKRNSVVGTPYWMAPEVIKRKDYGPKVDIWSLGIM-----CIEM 209

Query: 774 TVGE 777
             GE
Sbjct: 210 AEGE 213

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). Group II PAKs contain a PBD and a catalytic domain, but lack other motifs found in group I PAKs. Since group II PAKs do not contain an obvious AID, they may be regulated differently from group I PAKs. Group I PAKs interact with the SH3 containing proteins Nck, Grb2 and PIX; no such binding has been demonstrated for group II PAKs. Length = 286

>gnl|CDD|132957 cd06626, STKc_MEKK4, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

 Score = 60.8 bits (148), Expect = 5e-10
 Identities = 48/165 (29%), Positives = 67/165 (40%), Gaps = 47/165 (28%)

Query: 645 AVKV--FHQQYERALKSFEDECEVRKRIRHRNLVK-----------II------SSSLE- 684
           AVK         + +K   DE +V + ++H NLVK            I        +LE 
Sbjct: 29  AVKEIRIQDNDPKTIKEIADEMKVLELLKHPNLVKYYGVEVHREKVYIFMEYCSGGTLEE 88

Query: 685 YLHFG----------------------HSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKL 722
            L  G                      HS  I+H D+KP+N+ LD + V  + DFG A  
Sbjct: 89  LLEHGRILDEHVIRVYTLQLLEGLAYLHSHGIVHRDIKPANIFLDHNGVIKLGDFGCAVK 148

Query: 723 LS-GEDQLSKQTQTLA-TIGYMAPEYGTKGRVSTRG---DVCSFG 762
           L      + ++ Q+LA T  YMAPE  T G+    G   D+ S G
Sbjct: 149 LKNNTTTMGEEVQSLAGTPAYMAPEVITGGKGKGHGRAADIWSLG 193

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4/MKK7 and MKK3/MKK6. JNK and p38 are collectively known as stress-activated MAPKs, as they are activated in response to a variety of environmental stresses and pro-inflammatory cytokines. MEKK4 also plays roles in the re-polarization of the actin cytoskeleton in response to osmotic stress, in the proper closure of the neural tube, in cardiovascular development, and in immune responses. Length = 264

>gnl|CDD|173749 cd07855, STKc_ERK5, Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5

 Score = 61.6 bits (150), Expect = 5e-10
 Identities = 29/65 (44%), Positives = 40/65 (61%), Gaps = 5/65 (7%)

Query: 683 LEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLL--SGEDQLSKQTQTLATIG 740
           L+Y+H   S  +IH DLKPSN+L++ED    I DFG+A+ L  S  +     T+ +AT  
Sbjct: 120 LKYIH---SANVIHRDLKPSNLLVNEDCELRIGDFGMARGLSSSPTEHKYFMTEYVATRW 176

Query: 741 YMAPE 745
           Y APE
Sbjct: 177 YRAPE 181

Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the MAP2K MEK5, which in turn is regulated by the MAP3Ks MEKK2 and MEKK3. Activated ERK5 phosphorylates its targets including myocyte enhancer factor 2 (MEF2), Sap1a, c-Myc, and RSK. It plays a role in EGF-induced cell proliferation during the G1/S phase transition. Studies on knockout mice revealed that ERK5 is essential for cardiovascular development and plays an important role in angiogenesis. It is also critical for neural differentiation and survival. The ERK5 pathway has been implicated in the pathogenesis of many diseases including cancer, cardiac hypertrophy, and atherosclerosis. Length = 334

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 62.1 bits (151), Expect = 7e-10
 Identities = 30/85 (35%), Positives = 44/85 (51%)

Query: 364 NCSISGNIPQVVGNLSNLLVLELGGNNLTGPIPVTFSQLQTLQAFDLTRNKLAGPITDEL 423
           N  + G IP  +  L +L  + L GN++ G IP +   + +L+  DL+ N   G I + L
Sbjct: 427 NQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESL 486

Query: 424 CHLARLHSLVLQGNKFSGSIPSCLG 448
             L  L  L L GN  SG +P+ LG
Sbjct: 487 GQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|132943 cd06612, STKc_MST1_2, Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

 Score = 60.0 bits (146), Expect = 7e-10
 Identities = 29/86 (33%), Positives = 50/86 (58%), Gaps = 2/86 (2%)

Query: 678 IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLA 737
           I+  +L+ L + HS   IH D+K  N+LL+E+  A ++DFG++  L   D ++K+   + 
Sbjct: 104 ILYQTLKGLEYLHSNKKIHRDIKAGNILLNEEGQAKLADFGVSGQL--TDTMAKRNTVIG 161

Query: 738 TIGYMAPEYGTKGRVSTRGDVCSFGI 763
           T  +MAPE   +   + + D+ S GI
Sbjct: 162 TPFWMAPEVIQEIGYNNKADIWSLGI 187

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a MAPK kinase) and MEKK1 (a MAPK kinase kinase) by acting as a MAPK kinase kinase kinase (MAPKKKK). Activation of JNK by MST1 leads to caspase activation and apoptosis. MST1 has also been implicated in cell proliferation and differentiation. Krs1 may regulate cell growth arrest and apoptosis in response to cellular stress. Length = 256

>gnl|CDD|133200 cd05069, PTKc_Yes, Catalytic domain of the Protein Tyrosine Kinase, Yes

 Score = 60.1 bits (145), Expect = 8e-10
 Identities = 33/114 (28%), Positives = 60/114 (52%), Gaps = 5/114 (4%)

Query: 668 KRIRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGED 727
           K ++   LV + +   + + +   +  IH DL+ +N+L+ +++V  I+DFG+A+L+   +
Sbjct: 97  KYLKLPQLVDMAAQIADGMAYIERMNYIHRDLRAANILVGDNLVCKIADFGLARLIEDNE 156

Query: 728 QLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGETCTP 781
             ++Q      I + APE    GR + + DV SFGI+     T  +T G    P
Sbjct: 157 YTARQGAKFP-IKWTAPEAALYGRFTIKSDVWSFGIL----LTELVTKGRVPYP 205

Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. c-Yes kinase is the cellular homolog of the oncogenic protein (v-Yes) encoded by the Yamaguchi 73 and Esh sarcoma viruses. It displays functional overlap with other Src subfamily members, particularly Src. It also shows some unique functions such as binding to occludins, transmembrane proteins that regulate extracellular interactions in tight junctions. Yes also associates with a number of proteins in different cell types that Src does not interact with, like JAK2 and gp130 in pre-adipocytes, and Pyk2 in treated pulmonary vein endothelial cells. Although the biological function of Yes remains unclear, it appears to have a role in regulating cell-cell interactions and vesicle trafficking in polarized cells. Length = 260

>gnl|CDD|173668 cd05577, STKc_GRK, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase

 Score = 59.8 bits (145), Expect = 1e-09
 Identities = 32/85 (37%), Positives = 38/85 (44%), Gaps = 6/85 (7%)

Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLAT 738
           I   LE+LH      I++ DLKP NVLLD+     ISD G+A  L G     K      T
Sbjct: 104 IICGLEHLH---QRRIVYRDLKPENVLLDDHGNVRISDLGLAVELKGG---KKIKGRAGT 157

Query: 739 IGYMAPEYGTKGRVSTRGDVCSFGI 763
            GYMAPE           D  + G 
Sbjct: 158 PGYMAPEVLQGEVYDFSVDWFALGC 182

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of G protein signaling) homology (RH) domain and several motifs. The C-terminus diverges among different groups of GRKs. There are seven types of GRKs, named GRK1 to GRK7. They are subdivided into three main groups: visual (GRK1/7); beta-adrenergic receptor kinases (GRK2/3); and GRK4-like (GRK4/5/6). Expression of GRK2/3/5/6 is widespread while GRK1/4/7 show a limited tissue distribution. The substrate spectrum of the widely expressed GRKs partially overlaps. GRKs play important roles in the cardiovascular, immune, respiratory, skeletal, and nervous systems. Length = 277

>gnl|CDD|173723 cd06605, PKc_MAPKK, Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

 Score = 59.6 bits (145), Expect = 1e-09
 Identities = 38/102 (37%), Positives = 51/102 (50%), Gaps = 9/102 (8%)

Query: 665 EVRKRIRHRNLVKI---ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAK 721
           EV+ RI  R L KI   +   L YLH  H I  IH D+KPSN+L++      + DFG+  
Sbjct: 92  EVQGRIPERILGKIAVAVLKGLTYLHEKHKI--IHRDVKPSNILVNSRGQIKLCDFGV-- 147

Query: 722 LLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGI 763
             SG+   S     + T  YMAPE       S + D+ S G+
Sbjct: 148 --SGQLVNSLAKTFVGTSSYMAPERIQGNDYSVKSDIWSLGL 187

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity PKs that phosphorylate their downstream targets, MAPKs, at specific threonine and tyrosine residues. There are three MAPK subfamilies: extracellular signal-regulated kinase (ERK), c-Jun N-terminal kinase (JNK), and p38. In mammalian cells, there are seven MAPKKs (named MKK1-7) and 20 MAPKKKs. Each MAPK subfamily can be activated by at least two cognate MAPKKs and by multiple MAPKKKs. Length = 265

>gnl|CDD|173736 cd07832, STKc_CCRK, Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

 Score = 59.6 bits (145), Expect = 2e-09
 Identities = 29/67 (43%), Positives = 42/67 (62%), Gaps = 3/67 (4%)

Query: 683 LEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYM 742
           L+ + + H+  I+H DLKP+N+L+  D V  I+DFG+A+L S E+      Q +AT  Y 
Sbjct: 109 LKGVAYMHANGIMHRDLKPANLLISADGVLKIADFGLARLFSEEEPRLYSHQ-VATRWYR 167

Query: 743 APE--YG 747
           APE  YG
Sbjct: 168 APELLYG 174

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of heart failure. Length = 286

>gnl|CDD|133179 cd05048, PTKc_Ror, Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

 Score = 59.4 bits (144), Expect = 2e-09
 Identities = 30/107 (28%), Positives = 55/107 (51%), Gaps = 6/107 (5%)

Query: 661 EDECEVRKRIRHRNLVKI---ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDF 717
             +  V+  +   + + I   I++ +EYL   H    +H DL   N L+ E +   ISDF
Sbjct: 112 SGDETVKSSLDCSDFLHIAIQIAAGMEYLSSHH---FVHRDLAARNCLVGEGLTVKISDF 168

Query: 718 GIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
           G+++ +   D    Q+++L  + +M PE    G+ +T  D+ SFG++
Sbjct: 169 GLSRDIYSADYYRVQSKSLLPVRWMPPEAILYGKFTTESDIWSFGVV 215

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. Ror kinases are expressed in many tissues during development. They play important roles in bone and heart formation. Mutations in human Ror2 result in two different bone development genetic disorders, recessive Robinow syndrome and brachydactyly type B. Drosophila Ror is expressed only in the developing nervous system during neurite outgrowth and neuronal differentiation, suggesting a role for Drosophila Ror in neural development. More recently, mouse Ror1 and Ror2 have also been found to play an important role in regulating neurite growth in central neurons. Ror1 and Ror2 are believed to have some overlapping and redundant functions. Length = 283

>gnl|CDD|132949 cd06618, PKc_MKK7, Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7

 Score = 58.9 bits (143), Expect = 3e-09
 Identities = 39/111 (35%), Positives = 53/111 (47%), Gaps = 16/111 (14%)

Query: 664 CEVRKRIRH----RNLVKI---ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISD 716
            ++ KRI+       L K+   I  +L YL   H +  IH D+KPSN+LLD      + D
Sbjct: 101 DKLLKRIQGPIPEDILGKMTVAIVKALHYLKEKHGV--IHRDVKPSNILLDASGNVKLCD 158

Query: 717 FGIAKLLSGEDQLSKQTQTLATIGYMAPEY----GTKGRVSTRGDVCSFGI 763
           FGI+  L   D  +K T++     YMAPE         +   R DV S GI
Sbjct: 159 FGISGRLV--DSKAK-TRSAGCAAYMAPERIDPPDPNPKYDIRADVWSLGI 206

Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates its downstream target, c-Jun N-terminal kinase (JNK), on specific threonine and tyrosine residues. Although MKK7 is capable of dual phosphorylation, it prefers to phosphorylate the threonine residue of JNK. Thus, optimal activation of JNK requires both MKK4 (not included in this subfamily) and MKK7. MKK7 is primarily activated by cytokines. MKK7 is essential for liver formation during embryogenesis. It plays roles in G2/M cell cycle arrest and cell growth. In addition, it is involved in the control of programmed cell death, which is crucial in oncogenesis, cancer chemoresistance, and antagonism to TNFalpha-induced killing, through its inhibition by Gadd45beta and the subsequent suppression of the JNK cascade. Length = 296

>gnl|CDD|133221 cd05090, PTKc_Ror1, Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1

 Score = 58.9 bits (142), Expect = 3e-09
 Identities = 33/111 (29%), Positives = 59/111 (53%), Gaps = 10/111 (9%)

Query: 659 SFEDECEVRKRIRHRNLVKI---ISSSLEYL--HFGHSIPIIHCDLKPSNVLLDEDMVAH 713
           S +++  V+  + H + + I   I++ +EYL  HF      +H DL   N+L+ E +   
Sbjct: 110 SSDEDGTVKSSLDHGDFLHIAIQIAAGMEYLSSHF-----FVHKDLAARNILIGEQLHVK 164

Query: 714 ISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
           ISD G+++ +   D    Q ++L  I +M PE    G+ S+  D+ SFG++
Sbjct: 165 ISDLGLSREIYSADYYRVQPKSLLPIRWMPPEAIMYGKFSSDSDIWSFGVV 215

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. Ror kinases are expressed in many tissues during development. Avian Ror1 was found to be involved in late limb development. Studies in mice reveal that Ror1 is important in the regulation of neurite growth in central neurons, as well as in respiratory development. Loss of Ror1 also enhances the heart and skeletal abnormalities found in Ror2-deficient mice. Length = 283

>gnl|CDD|133202 cd05071, PTKc_Src, Catalytic domain of the Protein Tyrosine Kinase, Src

 Score = 58.5 bits (141), Expect = 3e-09
 Identities = 30/100 (30%), Positives = 56/100 (56%), Gaps = 1/100 (1%)

Query: 665 EVRKRIRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLS 724
           E+ K +R   LV + +     + +   +  +H DL+ +N+L+ E++V  ++DFG+A+L+ 
Sbjct: 94  EMGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIE 153

Query: 725 GEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
             +  ++Q      I + APE    GR + + DV SFGI+
Sbjct: 154 DNEYTARQGAKFP-IKWTAPEAALYGRFTIKSDVWSFGIL 192

Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Src also play a role in regulating cell adhesion, invasion, and motility in cancer cells and tumor vasculature, contributing to cancer progression and metastasis. Elevated levels of Src kinase activity have been reported in a variety of human cancers. Several inhibitors of Src have been developed as anti-cancer drugs. Src is also implicated in acute inflammatory responses and osteoclast function. Length = 262

>gnl|CDD|173673 cd05582, STKc_RSK_N, N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase

 Score = 58.7 bits (142), Expect = 4e-09
 Identities = 29/75 (38%), Positives = 42/75 (56%), Gaps = 2/75 (2%)

Query: 690 HSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTK 749
           HS+ II+ DLKP N+LLDE+    ++DFG++K     D   K      T+ YMAPE   +
Sbjct: 115 HSLGIIYRDLKPENILLDEEGHIKLTDFGLSK--ESIDHEKKAYSFCGTVEYMAPEVVNR 172

Query: 750 GRVSTRGDVCSFGII 764
              +   D  SFG++
Sbjct: 173 RGHTQSADWWSFGVL 187

Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylates all known RSK substrates. RSKs act as downstream effectors of mitogen-activated protein kinase (MAPK) and play key roles in mitogen-activated cell growth, differentiation, and survival. Mammals possess four RSK isoforms (RSK1-4) from distinct genes. RSK proteins are also referred to as MAP kinase-activated protein kinases (MAPKAPKs), p90-RSKs, or p90S6Ks. Length = 318

>gnl|CDD|173625 cd05032, PTKc_InsR_like, Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases

 Score = 58.1 bits (141), Expect = 4e-09
 Identities = 29/115 (25%), Positives = 50/115 (43%), Gaps = 6/115 (5%)

Query: 653 YERALKSFEDECEVR---KRIRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDED 709
           Y R+ +   +           +   +   I+  + YL        +H DL   N ++ ED
Sbjct: 99  YLRSRRPEAENNPGLGPPTLQKFIQMAAEIADGMAYLAAKK---FVHRDLAARNCMVAED 155

Query: 710 MVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
           +   I DFG+ + +   D   K  + L  + +MAPE    G  +T+ DV SFG++
Sbjct: 156 LTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMAPESLKDGVFTTKSDVWSFGVV 210

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR and IGF-1R, which share 84% sequence identity in their kinase domains, display physiologically distinct yet overlapping functions in cell growth, differentiation, and metabolism. InsR activation leads primarily to metabolic effects while IGF-1R activation stimulates mitogenic pathways. In cells expressing both receptors, InsR/IGF-1R hybrids are found together with classical receptors. Both receptors can interact with common adaptor molecules such as IRS-1 and IRS-2. Length = 277

>gnl|CDD|173726 cd06610, STKc_OSR1_SPAK, Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

 Score = 57.8 bits (140), Expect = 6e-09
 Identities = 37/91 (40%), Positives = 45/91 (49%), Gaps = 20/91 (21%)

Query: 683 LEYLH-FGHSIPIIHCDLKPSNVLLDEDMVAHISDFGI-AKLLSGEDQLSKQTQTLA-TI 739
           LEYLH  G     IH D+K  N+LL ED    I+DFG+ A L  G D+  K  +T   T 
Sbjct: 115 LEYLHSNGQ----IHRDIKAGNILLGEDGSVKIADFGVSASLADGGDRTRKVRKTFVGTP 170

Query: 740 GYMAPE-------YGTKGRVSTRGDVCSFGI 763
            +MAPE       Y  K       D+ SFGI
Sbjct: 171 CWMAPEVMEQVHGYDFK------ADIWSFGI 195

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1 and SPAK contain a conserved C-terminal (CCT) domain, which recognizes a unique motif ([RK]FX[VI]) present in their activating kinases (WNK1/WNK4) and their substrates. Length = 267

>gnl|CDD|173628 cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

 Score = 57.4 bits (139), Expect = 7e-09
 Identities = 45/171 (26%), Positives = 64/171 (37%), Gaps = 47/171 (27%)

Query: 639 GNGMEVAVKVF-HQQYERALKSFEDECEVRKRIRHRNLVKIISSS-----------LEYL 686
             G +VAVK   H   E+    FE E E+ + + H N+VK                +EYL
Sbjct: 31  NTGEQVAVKSLNHSGEEQHRSDFEREIEILRTLDHENIVKYKGVCEKPGGRSLRLIMEYL 90

Query: 687 HFG--------------------------------HSIPIIHCDLKPSNVLLDEDMVAHI 714
             G                                 S   IH DL   N+L++ + +  I
Sbjct: 91  PSGSLRDYLQRHRDQINLKRLLLFSSQICKGMDYLGSQRYIHRDLAARNILVESEDLVKI 150

Query: 715 SDFGIAKLLSGEDQL--SKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGI 763
           SDFG+AK+L  +      K+        Y APE     + S+  DV SFG+
Sbjct: 151 SDFGLAKVLPEDKDYYYVKEPGESPIFWY-APECLRTSKFSSASDVWSFGV 200

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jaks are also involved in regulating the surface expression of some cytokine receptors. The Jak-STAT pathway is involved in many biological processes including hematopoiesis, immunoregulation, host defense, fertility, lactation, growth, and embryogenesis. Length = 284

>gnl|CDD|133201 cd05070, PTKc_Fyn_Yrk, Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk

 Score = 57.3 bits (138), Expect = 7e-09
 Identities = 46/171 (26%), Positives = 79/171 (46%), Gaps = 44/171 (25%)

Query: 636 IGIGNG-MEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVKIIS-------------- 680
           +G  NG  +VAVK   +    + +SF +E ++ K++RH  LV++ +              
Sbjct: 24  MGTWNGNTKVAVKTL-KPGTMSPESFLEEAQIMKKLRHDKLVQLYAVVSEEPIYIVTEYM 82

Query: 681 ---SSLEYLHFGH----SIP--------------------IIHCDLKPSNVLLDEDMVAH 713
              S L++L  G      +P                     IH DL+ +N+L+ + +V  
Sbjct: 83  SKGSLLDFLKDGEGRALKLPNLVDMAAQVAAGMAYIERMNYIHRDLRSANILVGDGLVCK 142

Query: 714 ISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
           I+DFG+A+L+   +  ++Q      I + APE    GR + + DV SFGI+
Sbjct: 143 IADFGLARLIEDNEYTARQGAKFP-IKWTAPEAALYGRFTIKSDVWSFGIL 192

Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Fyn, together with Lck, plays a critical role in T-cell signal transduction by phosphorylating ITAM (immunoreceptor tyr activation motif) sequences on T-cell receptors, ultimately leading to the proliferation and differentiation of T-cells. In addition, Fyn is involved in the myelination of neurons, and is implicated in Alzheimer's and Parkinson's diseases. Yrk has been detected only in chickens. It is primarily found in neuronal and epithelial cells and in macrophages. It may play a role in inflammation and in response to injury. Length = 260

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 58.7 bits (142), Expect = 9e-09
 Identities = 30/86 (34%), Positives = 48/86 (55%), Gaps = 1/86 (1%)

Query: 233 ISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSITNSSKLSDLELGENLFSGF 292
           + L N  L G +P+ I   L +++++NL  NS  G IP S+ + + L  L+L  N F+G 
Sbjct: 423 LGLDNQGLRGFIPNDIS-KLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481

Query: 293 IPNTIGNLRNLEFGNIADNYLTSSTP 318
           IP ++G L +L   N+  N L+   P
Sbjct: 482 IPESLGQLTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|173729 cd06617, PKc_MKK3_6, Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6

 Score = 56.3 bits (136), Expect = 2e-08
 Identities = 37/103 (35%), Positives = 50/103 (48%), Gaps = 12/103 (11%)

Query: 668 KRIRHRNLVKI---ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLS 724
             I    L KI   I  +LEYLH    + +IH D+KPSNVL++ +    + DFGI+  L 
Sbjct: 98  LTIPEDILGKIAVSIVKALEYLH--SKLSVIHRDVKPSNVLINRNGQVKLCDFGISGYLV 155

Query: 725 GEDQLSKQTQTLATIGYMAPEY----GTKGRVSTRGDVCSFGI 763
             D ++K T       YMAPE       +     + DV S GI
Sbjct: 156 --DSVAK-TIDAGCKPYMAPERINPELNQKGYDVKSDVWSLGI 195

Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs that phosphorylate and activate their downstream target, p38 MAPK, on specific threonine and tyrosine residues. MKK3/6 plays roles in the regulation of cell cycle progression, cytokine- and stress-induced apoptosis, oncogenic transformation, and adult tissue regeneration. In addition, MKK6 plays a critical role in osteoclast survival in inflammatory disease while MKK3 is associated with tumor invasion, progression, and poor patient survival in glioma. Length = 283

>gnl|CDD|173731 cd06627, STKc_Cdc7_like, Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

 Score = 55.7 bits (135), Expect = 2e-08
 Identities = 45/165 (27%), Positives = 66/165 (40%), Gaps = 44/165 (26%)

Query: 640 NGMEVAVK--VFHQQYERALKSFEDECEVRKRIRHRNLVKIISSS---------LEY--- 685
            G  VA+K     +  E ALKS   E ++ K ++H N+VK I S          LEY   
Sbjct: 24  TGDFVAIKQISLEKIKEEALKSIMQEIDLLKNLKHPNIVKYIGSIETSDSLYIILEYAEN 83

Query: 686 ----------------------------LHFGHSIPIIHCDLKPSNVLLDEDMVAHISDF 717
                                       L + H   +IH D+K +N+L  +D V  ++DF
Sbjct: 84  GSLRQIIKKFGPFPESLVAVYVYQVLQGLAYLHEQGVIHRDIKAANILTTKDGVVKLADF 143

Query: 718 GIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFG 762
           G+A  L+   +       + T  +MAPE       ST  D+ S G
Sbjct: 144 GVATKLNDVSKDD--ASVVGTPYWMAPEVIEMSGASTASDIWSLG 186

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast Cdc7 is essential for cell division by playing a key role in the initiation of septum formation and cytokinesis. Budding yeast Cdc15 functions to coordinate mitotic exit with cytokinesis. Arabidopsis MAPKKK epsilon is required for pollen development in the plasma membrane. Length = 254

>gnl|CDD|133213 cd05082, PTKc_Csk, Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase

 Score = 55.8 bits (134), Expect = 2e-08
 Identities = 48/173 (27%), Positives = 71/173 (41%), Gaps = 50/173 (28%)

Query: 635 LIGIGNGMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVKII------SSSL----E 684
           ++G   G +VAVK    + +   ++F  E  V  ++RH NLV+++         L    E
Sbjct: 23  MLGDYRGNKVAVKCI--KNDATAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTE 80

Query: 685 Y-----------------------LHFGHSI----------PIIHCDLKPSNVLLDEDMV 711
           Y                       L F   +            +H DL   NVL+ ED V
Sbjct: 81  YMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEANNFVHRDLAARNVLVSEDNV 140

Query: 712 AHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
           A +SDFG+ K  S     S Q      + + APE   + + ST+ DV SFGI+
Sbjct: 141 AKVSDFGLTKEAS-----STQDTGKLPVKWTAPEALREKKFSTKSDVWSFGIL 188

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, resulting in their inactivation. Csk is expressed in a wide variety of tissues. As a negative regulator of Src, Csk plays a role in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. In addition, Csk also shows Src-independent functions. It is a critical component in G-protein signaling, and plays a role in cytoskeletal reorganization and cell migration. Length = 256

>gnl|CDD|234389 TIGR03903, TOMM_kin_cyc, TOMM system kinase/cyclase fusion protein

 Score = 57.9 bits (140), Expect = 2e-08
 Identities = 43/176 (24%), Positives = 66/176 (37%), Gaps = 52/176 (29%)

Query: 641 GMEVAVKVF---HQQYERALKSFEDECEVRKRIRHRNLVKIISSS--------------- 682
           G EVA+K+      + E     F  E  +  R+ H N+V ++ S                
Sbjct: 3   GHEVAIKLLRTDAPEEEHQRARFRRETALCARLYHPNIVALLDSGEAPPGLLFAVFEYVP 62

Query: 683 --------------------------LEYLHFGHSIPIIHCDLKPSNVLL---DEDMVAH 713
                                     L+ L   H+  I+H DLKP N+++        A 
Sbjct: 63  GRTLREVLAADGALPAGETGRLMLQVLDALACAHNQGIVHRDLKPQNIMVSQTGVRPHAK 122

Query: 714 ISDFGIAKLLSG-----EDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
           + DFGI  LL G        L++ T+ L T  Y APE      V+   D+ ++G+I
Sbjct: 123 VLDFGIGTLLPGVRDADVATLTRTTEVLGTPTYCAPEQLRGEPVTPNSDLYAWGLI 178

This model represents proteins of 1350 in length, in multiple species of Burkholderia, in Acidovorax avenae subsp. citrulli AAC00-1 and Delftia acidovorans SPH-1, and in multiple copies in Sorangium cellulosum, in genomic neighborhoods that include a cyclodehydratase/docking scaffold fusion protein (TIGR03882) and a member of the thiazole/oxazole modified metabolite (TOMM) precursor family TIGR03795. It has a kinase domain in the N-terminal 300 amino acids, followed by a cyclase homology domain, followed by regions without named domain definitions. It is a probable bacteriocin-like metabolite biosynthesis protein [Cellular processes, Toxin production and resistance]. Length = 1266

>gnl|CDD|173733 cd07829, STKc_CDK_like, Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

 Score = 56.0 bits (136), Expect = 2e-08
 Identities = 47/158 (29%), Positives = 70/158 (44%), Gaps = 31/158 (19%)

Query: 599 KSRTGPSNDGINSPQAIRRFSYHELLRATDRFSENNLIGIGNGMEVAVK------VFHQQ 652
           K R     +GI S  A+R  S   LL+        N++ +   ++V         VF  +
Sbjct: 31  KIRLDNEEEGIPS-TALREIS---LLK---ELKHPNIVKL---LDVIHTERKLYLVF--E 78

Query: 653 Y-ERALKSFEDECEVRKRIRHRNLVKIIS----SSLEYLHFGHSIPIIHCDLKPSNVLLD 707
           Y +  LK +    + R      NL+K I       L Y H   S  I+H DLKP N+L++
Sbjct: 79  YCDMDLKKY---LDKRPGPLSPNLIKSIMYQLLRGLAYCH---SHRILHRDLKPQNILIN 132

Query: 708 EDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPE 745
            D V  ++DFG+A+       L   T  + T+ Y APE
Sbjct: 133 RDGVLKLADFGLARAFGIP--LRTYTHEVVTLWYRAPE 168

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the early G1 phase by CDK4 or CDK6, the G1/S phase transition by CDK2, or the entry of mitosis by CDK1. They also exhibit overlapping cyclin specificity and functions in certain conditions. Knockout mice with a single CDK deleted remain viable with specific phenotypes, showing that some CDKs can compensate for each other. For example, CDK4 can compensate for the loss of CDK6, however, double knockout mice with both CDK4 and CDK6 deleted die in utero. CDK8 and CDK9 are mainly involved in transcription while CDK5 is implicated in neuronal function. CDK7 plays essential roles in both the cell cycle as a CDK-Activating Kinase (CAK) and in transcription as a component of the general transcription factor TFIIH. Length = 282

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 57.1 bits (138), Expect = 3e-08
 Identities = 37/105 (35%), Positives = 55/105 (52%), Gaps = 4/105 (3%)

Query: 209 LALATNNLVGVVPVTIFNMSALKEISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGT 268
           L L    L G +P  I  +  L+ I+L  NS+ G++P  +  S+ ++E L+L  NSF+G+
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLG-SITSLEVLDLSYNSFNGS 481

Query: 269 IPSSITNSSKLSDLELGENLFSGFIPNTIGN--LRNLEFGNIADN 311
           IP S+   + L  L L  N  SG +P  +G   L    F N  DN
Sbjct: 482 IPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASF-NFTDN 525

Length = 623

>gnl|CDD|133199 cd05068, PTKc_Frk_like, Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

 Score = 55.1 bits (133), Expect = 3e-08
 Identities = 40/149 (26%), Positives = 64/149 (42%), Gaps = 43/149 (28%)

Query: 658 KSFEDECEVRKRIRHRNLVK------------IIS------SSLEYLHF--GHSIPI--- 694
           K F  E ++ K++RH  L++            I++      S LEYL    G ++ +   
Sbjct: 46  KDFLAEAQIMKKLRHPKLIQLYAVCTLEEPIYIVTELMKYGSLLEYLQGGAGRALKLPQL 105

Query: 695 -------------------IHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQT 735
                              IH DL   NVL+ E+ +  ++DFG+A+++  ED    +   
Sbjct: 106 IDMAAQVASGMAYLEAQNYIHRDLAARNVLVGENNICKVADFGLARVI-KEDIYEAREGA 164

Query: 736 LATIGYMAPEYGTKGRVSTRGDVCSFGII 764
              I + APE     R S + DV SFGI+
Sbjct: 165 KFPIKWTAPEAALYNRFSIKSDVWSFGIL 193

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Frk, also known as Rak, is specifically expressed in liver, lung, kidney, intestine, mammary glands, and the islets of Langerhans. Rodent homologs were previously referred to as GTK (gastrointestinal tyr kinase), BSK (beta-cell Src-like kinase), or IYK (intestinal tyr kinase). Studies in mice reveal that Frk is not essential for viability. It plays a role in the signaling that leads to cytokine-induced beta-cell death in Type I diabetes. It also regulates beta-cell number during embryogenesis and early in life. Length = 261

>gnl|CDD|143338 cd07833, STKc_CDKL, Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

 Score = 55.4 bits (134), Expect = 3e-08
 Identities = 41/147 (27%), Positives = 58/147 (39%), Gaps = 43/147 (29%)

Query: 641 GMEVAVKVFHQQY--ERALKSFEDECEVRKRIRHRNLVKII-----------------SS 681
           G  VA+K F +    E   K+   E +V +++RH N+V +                   +
Sbjct: 26  GEIVAIKKFKESEDDEDVKKTALREVKVLRQLRHENIVNLKEAFRRKGRLYLVFEYVERT 85

Query: 682 SLEYL-----------------------HFGHSIPIIHCDLKPSNVLLDEDMVAHISDFG 718
            LE L                        + HS  IIH D+KP N+L+ E  V  + DFG
Sbjct: 86  LLELLEASPGGLPPDAVRSYIWQLLQAIAYCHSHNIIHRDIKPENILVSESGVLKLCDFG 145

Query: 719 IAKLLSGEDQLSKQTQTLATIGYMAPE 745
            A+ L      S  T  +AT  Y APE
Sbjct: 146 FARALRARPA-SPLTDYVATRWYRAPE 171

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning and memory. Length = 288

>gnl|CDD|133214 cd05083, PTKc_Chk, Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

 Score = 55.0 bits (132), Expect = 3e-08
 Identities = 41/169 (24%), Positives = 72/169 (42%), Gaps = 56/169 (33%)

Query: 641 GMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVKI---------------------- 678
           G +VAVK    + +   ++F +E  V  ++ H+NLV++                      
Sbjct: 29  GQKVAVKNI--KCDVTAQAFLEETAVMTKLHHKNLVRLLGVILHNGLYIVMELMSKGNLV 86

Query: 679 ----------------------ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISD 716
                                 ++  +EYL    S  ++H DL   N+L+ ED VA +SD
Sbjct: 87  NFLRTRGRALVSVIQLLQFSLDVAEGMEYLE---SKKLVHRDLAARNILVSEDGVAKVSD 143

Query: 717 FGIAKLLS-GEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
           FG+A++ S G D       +   + + APE     + S++ DV S+G++
Sbjct: 144 FGLARVGSMGVD------NSKLPVKWTAPEALKHKKFSSKSDVWSYGVL 186

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src kinases using a noncatalytic mechanism by simply binding to them. As a negative regulator of Src kinases, Chk may play important roles in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. Chk is expressed in brain and hematopoietic cells. Studies in mice reveal that Chk is not functionally redundant with Csk and that it plays an important role as a regulator of immune responses. Chk also plays a role in neural differentiation in a manner independent of Src by enhancing Mapk activation via Ras-mediated signaling. Length = 254

>gnl|CDD|173757 cd08217, STKc_Nek2, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

 Score = 54.9 bits (133), Expect = 4e-08
 Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 6/87 (6%)

Query: 679 ISSSLEYLHFGH--SIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQT- 735
           +  +L   H        ++H DLKP+N+ LD +    + DFG+AK+L  +       +T 
Sbjct: 114 LLLALYECHNRSDPGNTVLHRDLKPANIFLDANNNVKLGDFGLAKILGHDSSF---AKTY 170

Query: 736 LATIGYMAPEYGTKGRVSTRGDVCSFG 762
           + T  YM+PE         + D+ S G
Sbjct: 171 VGTPYYMSPEQLNHMSYDEKSDIWSLG 197

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exit. NIMA is involved in nuclear membrane fission. Vertebrate Nek2 is a cell cycle-regulated STK, localized in centrosomes and kinetochores, that regulates centrosome splitting at the G2/M phase. It also interacts with other mitotic kinases such as Polo-like kinase 1 and may play a role in spindle checkpoint. An increase in the expression of the human NEK2 gene is strongly associated with the progression of non-Hodgkin lymphoma. Length = 265

>gnl|CDD|173747 cd07852, STKc_MAPK15, Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15

 Score = 55.7 bits (135), Expect = 4e-08
 Identities = 29/67 (43%), Positives = 42/67 (62%), Gaps = 6/67 (8%)

Query: 682 SLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLS-GEDQLSKQTQT--LAT 738
           +L+Y+H G+   +IH DLKPSN+LL+ D    ++DFG+A+ LS  E+       T  +AT
Sbjct: 119 ALKYIHSGN---VIHRDLKPSNILLNSDCRVKLADFGLARSLSELEENPENPVLTDYVAT 175

Query: 739 IGYMAPE 745
             Y APE
Sbjct: 176 RWYRAPE 182

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimuli whereas ERK8 shows low basal activity and is activated by DNA-damaging agents. ERK7 and ERK8 also have different substrate profiles. Genome analysis shows that they are orthologs with similar gene structures. ERK7 and ERK 8 may be involved in the signaling of some nuclear receptor transcription factors. ERK7 regulates hormone-dependent degradation of estrogen receptor alpha while ERK8 down-regulates the transcriptional co-activation androgen and glucocorticoid receptors. Length = 337

>gnl|CDD|133191 cd05060, PTKc_Syk_like, Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases

 Score = 54.7 bits (132), Expect = 5e-08
 Identities = 44/168 (26%), Positives = 65/168 (38%), Gaps = 53/168 (31%)

Query: 643 EVAVKVFHQQYERALKS-FEDECEVRKRIRHRNLVKII---------------------- 679
           EVAVK   Q++  A K  F  E  V  ++ H  +V++I                      
Sbjct: 25  EVAVKTLKQEHIAAGKKEFLREASVMAQLDHPCIVRLIGVCKGEPLMLVMELAPLGPLLK 84

Query: 680 --------------------SSSLEYL---HFGHSIPIIHCDLKPSNVLLDEDMVAHISD 716
                               +  + YL   HF      +H DL   NVLL     A ISD
Sbjct: 85  YLKKRREIPVSDLKELAHQVAMGMAYLESKHF------VHRDLAARNVLLVNRHQAKISD 138

Query: 717 FGIAKLL-SGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGI 763
           FG+++ L +G D     T     + + APE    G+ S++ DV S+G+
Sbjct: 139 FGMSRALGAGSDYYRATTAGRWPLKWYAPECINYGKFSSKSDVWSYGV 186

Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, migration, and phagocytosis. Syk is important in B-cell receptor (BCR) signaling, while Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Syk also plays a central role in Fc receptor-mediated phagocytosis in the adaptive immune system. Shark is exclusively expressed in ectodermally derived epithelia, and is localized preferentially to the apical surface of the epithelial cells, it may play a role in a signaling pathway for epithelial cell polarity. Length = 257

>gnl|CDD|132991 cd06917, STKc_NAK1_like, Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases

 Score = 54.8 bits (132), Expect = 5e-08
 Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 5/88 (5%)

Query: 678 IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLA 737
           II   L  L + H + +IH D+K +N+L+       + DFG+A LL+   Q S +  T  
Sbjct: 106 IIREVLVALKYIHKVGVIHRDIKAANILVTNTGNVKLCDFGVAALLN---QNSSKRSTFV 162

Query: 738 TIGY-MAPEYGTKGRV-STRGDVCSFGI 763
              Y MAPE  T+G+   T+ D+ S GI
Sbjct: 163 GTPYWMAPEVITEGKYYDTKADIWSLGI 190

Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of centrin, and phosphorylates substrates in a Cdc31p-dependent manner. Length = 277

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 56.0 bits (135), Expect = 6e-08
 Identities = 25/78 (32%), Positives = 49/78 (62%), Gaps = 1/78 (1%)

Query: 196 IPREIGNLPYLARLALATNNLVGVVPVTIFNMSALKEISLLNNSLSGSLPSRIDLSLPNV 255
           IP +I  L +L  + L+ N++ G +P ++ ++++L+ + L  NS +GS+P  +   L ++
Sbjct: 434 IPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQ-LTSL 492

Query: 256 ETLNLGINSFSGTIPSSI 273
             LNL  NS SG +P+++
Sbjct: 493 RILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|143333 cd05118, STKc_CMGC, Catalytic domain of CMGC family Serine/Threonine Kinases

 Score = 54.6 bits (132), Expect = 6e-08
 Identities = 49/172 (28%), Positives = 77/172 (44%), Gaps = 34/172 (19%)

Query: 606 NDGINSPQAIRRFSYHELLRATDRFSENNLIGIGNGMEVAVKVFHQQYERALKSFE---- 661
           ++GI    A+R       ++     +  N+I + +       VF  + +  L  FE    
Sbjct: 38  SEGIPK-TALRE------IKLLKELNHPNIIKLLD-------VFRHKGDLYL-VFEFMDT 82

Query: 662 DECEVRKRIRHRNLV---KIISS----SLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHI 714
           D  ++   I+ R       +I S     L+ L F HS  I+H DLKP N+L++ + V  +
Sbjct: 83  DLYKL---IKDRQRGLPESLIKSYLYQLLQGLAFCHSHGILHRDLKPENLLINTEGVLKL 139

Query: 715 SDFGIAKLLSGEDQLSKQTQTLATIGYMAPE--YGTKGRVSTRGDVCSFGII 764
           +DFG+A+      +    T  + T  Y APE   G KG  ST  D+ S G I
Sbjct: 140 ADFGLARSFGSPVRP--YTHYVVTRWYRAPELLLGDKG-YSTPVDIWSVGCI 188

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Length = 283

>gnl|CDD|132978 cd06647, STKc_PAK_I, Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase

 Score = 54.5 bits (131), Expect = 6e-08
 Identities = 44/169 (26%), Positives = 70/169 (41%), Gaps = 41/169 (24%)

Query: 636 IGIGNGMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVKIISSSL---------EYL 686
           I +  G EVA+K  + Q +   +   +E  V +  +H N+V  + S L         EYL
Sbjct: 39  IDVATGQEVAIKQMNLQQQPKKELIINEILVMRENKHPNIVNYLDSYLVGDELWVVMEYL 98

Query: 687 ------------------------------HFGHSIPIIHCDLKPSNVLLDEDMVAHISD 716
                                          F HS  +IH D+K  N+LL  D    ++D
Sbjct: 99  AGGSLTDVVTETCMDEGQIAAVCRECLQALEFLHSNQVIHRDIKSDNILLGMDGSVKLTD 158

Query: 717 FGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIIS 765
           FG    ++ E   SK++  + T  +MAPE  T+     + D+ S GI++
Sbjct: 159 FGFCAQITPEQ--SKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMA 205

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group I PAKs, also called conventional PAKs, include PAK1, PAK2, and PAK3. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). They interact with the SH3 domain containing proteins Nck, Grb2 and PIX. Binding of group I PAKs to activated GTPases leads to conformational changes that destabilize the AID, allowing autophosphorylation and full activation of the kinase domain. Known group I PAK substrates include MLCK, Bad, Raf, MEK1, LIMK, Merlin, Vimentin, Myc, Stat5a, and Aurora A, among others. Length = 293

>gnl|CDD|215036 PLN00034, PLN00034, mitogen-activated protein kinase kinase; Provisional

 Score = 55.2 bits (133), Expect = 7e-08
 Identities = 69/284 (24%), Positives = 103/284 (36%), Gaps = 96/284 (33%)

Query: 548 PDLQVSPCKPNKPNTHKKSRKMLLLVIVLPLSTALIVVVTLTLKWKLIKCWKSRTGPSND 607
           P   V      +  T  + R+   L + LP         +L +   L     S +  S+ 
Sbjct: 6   PPPGVPLPSTARHTTKSRPRRRPDLTLPLPQRD-----PSLAVPLPLPPPSSSSSSSSSS 60

Query: 608 GINSPQAIRRFSYHELLRATDRFSENNLIGIGNGMEVAVKVFHQQYER--ALK----SFE 661
             +        S  EL R        N IG G G  V  KV H+   R  ALK    + E
Sbjct: 61  SASGSAPSAAKSLSELERV-------NRIGSGAGGTV-YKVIHRPTGRLYALKVIYGNHE 112

Query: 662 D--------ECEVRKRIRHRNLVKI----------------------------------- 678
           D        E E+ + + H N+VK                                    
Sbjct: 113 DTVRRQICREIEILRDVNHPNVVKCHDMFDHNGEIQVLLEFMDGGSLEGTHIADEQFLAD 172

Query: 679 ----ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQT- 733
               I S + YLH  H   I+H D+KPSN+L++      I+DFG++++L+       QT 
Sbjct: 173 VARQILSGIAYLHRRH---IVHRDIKPSNLLINSAKNVKIADFGVSRILA-------QTM 222

Query: 734 ----QTLATIGYMAPEYGTKGRVST----------RGDVCSFGI 763
                ++ TI YM+PE     R++T           GD+ S G+
Sbjct: 223 DPCNSSVGTIAYMSPE-----RINTDLNHGAYDGYAGDIWSLGV 261

Length = 353

>gnl|CDD|173744 cd07847, STKc_CDKL1_4, Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4

 Score = 54.3 bits (131), Expect = 7e-08
 Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 2/69 (2%)

Query: 677 KIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTL 736
           KII  +L+ ++F H    IH D+KP N+L+ +     + DFG A++L+G       T  +
Sbjct: 104 KIIWQTLQAVNFCHKHNCIHRDVKPENILITKQGQIKLCDFGFARILTGPG--DDYTDYV 161

Query: 737 ATIGYMAPE 745
           AT  Y APE
Sbjct: 162 ATRWYRAPE 170

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The function of CDKL4 is unknown. Length = 286

>gnl|CDD|173737 cd07834, STKc_MAPK, Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase

 Score = 54.8 bits (133), Expect = 7e-08
 Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 1/61 (1%)

Query: 686 LHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQ-TQTLATIGYMAP 744
           L + HS  +IH DLKPSN+L++ +    I DFG+A+ +  ++      T+ + T  Y AP
Sbjct: 116 LKYLHSANVIHRDLKPSNILVNSNCDLKICDFGLARGVDPDEDEKGFLTEYVVTRWYRAP 175

Query: 745 E 745
           E
Sbjct: 176 E 176

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPK kinase (MAP2K or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAP3K or MKKK). Each cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. There are three main typical MAPK subfamilies: Extracellular signal-Regulated Kinase (ERK), c-Jun N-terminal Kinase (JNK), and p38. Some MAPKs are atypical in that they are not regulated by MAP2Ks. These include MAPK4, MAPK6, NLK, and ERK7. Length = 330

>gnl|CDD|173633 cd05052, PTKc_Abl, Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

 Score = 54.1 bits (130), Expect = 8e-08
 Identities = 41/169 (24%), Positives = 68/169 (40%), Gaps = 50/169 (29%)

Query: 641 GMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVKI---------------------- 678
            + VAVK   +     ++ F  E  V K I+H NLV++                      
Sbjct: 31  SLTVAVKTLKED-TMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNL 89

Query: 679 -----------------------ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHIS 715
                                  ISS++EYL   +    IH DL   N L+ E+ +  ++
Sbjct: 90  LDYLRECNRQEVNAVVLLYMATQISSAMEYLEKKN---FIHRDLAARNCLVGENHLVKVA 146

Query: 716 DFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
           DFG+++L++G D  +        I + APE     + S + DV +FG++
Sbjct: 147 DFGLSRLMTG-DTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVL 194

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays a role in cell proliferation and survival. In response to DNA damage or oxidative stress, Abl is transported to the nucleus where it induces apoptosis. In chronic myelogenous leukemia (CML) patients, an aberrant translocation results in the replacement of the first exon of Abl with the BCR (breakpoint cluster region) gene. The resulting BCR-Abl fusion protein is constitutively active and associates into tetramers, resulting in a hyperactive kinase sending a continuous signal. This leads to uncontrolled proliferation, morphological transformation and anti-apoptotic effects. BCR-Abl is the target of selective inhibitors, such as imatinib (Gleevec), used in the treatment of CML. Abl2, also known as ARG (Abelson-related gene), is thought to play a cooperative role with Abl in the proper development of the nervous system. The Tel-ARG fusion protein, resulting from reciprocal translocation between chromosomes 1 and 12, is associated with acute myeloid leukemia (AML). The TEL gene is a frequent fusion partner of other tyr kinase oncogenes, including Tel/Abl, Tel/PDGFRbeta, and Tel/Jak2, found in patients with leukemia and myeloproliferative disorders. Length = 263

>gnl|CDD|173670 cd05579, STKc_MAST_like, Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

 Score = 54.2 bits (131), Expect = 8e-08
 Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 9/79 (11%)

Query: 673 RNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQL--- 729
           R  +  I  +LEYLH   S  IIH DLKP N+L+D +    ++DFG++K+     Q+   
Sbjct: 96  RIYIAEIVLALEYLH---SNGIIHRDLKPDNILIDSNGHLKLTDFGLSKVGLVRRQINLN 152

Query: 730 ---SKQTQTLATIGYMAPE 745
               +  + + T  Y+APE
Sbjct: 153 DDEKEDKRIVGTPDYIAPE 171

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert relative to other kinases. The fungal kinases in this subfamily harbor other domains in addition to a central catalytic domain, which also contains an insert relative to MAST kinases like MASTL. Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. MAST kinases are cytoskeletal associated kinases of unknown function that are also expressed at neuromuscular junctions and postsynaptic densities. The fungal proteins Rim15 and cek1 are involved in the regulation of meiosis and mitosis, respectively. Length = 265

>gnl|CDD|173671 cd05580, STKc_PKA, Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

 Score = 54.1 bits (131), Expect = 1e-07
 Identities = 45/155 (29%), Positives = 62/155 (40%), Gaps = 56/155 (36%)

Query: 638 IGNGMEVAVKVFHQQYERALKSFE---DECEVRKRIRHRNLVKIISS------------- 681
            G+G   A+K+  +     LK  E   +E  + + IRH  LV +  S             
Sbjct: 23  KGSGKYYALKILSKAKIVKLKQVEHVLNEKRILQSIRHPFLVNLYGSFQDDSNLYLVMEY 82

Query: 682 ------------------------------SLEYLHFGHSIPIIHCDLKPSNVLLDEDMV 711
                                         +LEYLH   S+ I++ DLKP N+LLD D  
Sbjct: 83  VPGGELFSHLRKSGRFPEPVARFYAAQVVLALEYLH---SLDIVYRDLKPENLLLDSDGY 139

Query: 712 AHISDFGIAKLLSGEDQLSKQTQTL-ATIGYMAPE 745
             I+DFG AK + G      +T TL  T  Y+APE
Sbjct: 140 IKITDFGFAKRVKG------RTYTLCGTPEYLAPE 168

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubiquitously in cells and interacts with many different downstream targets. It plays a role in the regulation of diverse processes such as growth, development, memory, metabolism, gene expression, immunity, and lipolysis. Length = 290

>gnl|CDD|173730 cd06624, STKc_ASK, Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase

 Score = 53.7 bits (129), Expect = 1e-07
 Identities = 44/173 (25%), Positives = 70/173 (40%), Gaps = 56/173 (32%)

Query: 640 NGMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVKIISSS----------------- 682
             + +A+K   ++  R ++   +E  +   ++HRN+V+ + S                  
Sbjct: 32  TQVRIAIKEIPERDSRYVQPLHEEIALHSYLKHRNIVQYLGSDSENGFFKIFMEQVPGGS 91

Query: 683 --------------------------LEYLHFGHSIPIIHCDLKPSNVLLDE-DMVAHIS 715
                                     LE L + H   I+H D+K  NVL++    V  IS
Sbjct: 92  LSALLRSKWGPLKDNEQTIIFYTKQILEGLKYLHDNQIVHRDIKGDNVLVNTYSGVVKIS 151

Query: 716 DFGIAKLLSGEDQLSKQTQTL-ATIGYMAPEYGTKGRVSTRG-----DVCSFG 762
           DFG +K L+G   ++  T+T   T+ YMAPE   KG    RG     D+ S G
Sbjct: 152 DFGTSKRLAG---INPCTETFTGTLQYMAPEVIDKG---PRGYGAPADIWSLG 198

Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4/MKK7 and MKK3/MKK6. It plays important roles in cytokine and stress responses, as well as in reactive oxygen species (ROS)-mediated cellular responses. ASK1 is implicated in various diseases mediated by oxidative stress including inschemic heart disease, hypertension, vessel injury, brain ischemia, Fanconi anemia, asthma, and pulmonary edema, among others. ASK2 (also called MAPKKK6) functions only in a heteromeric complex with ASK1, and can activate ASK1 by direct phosphorylation. The function of MAPKKK15 is still unknown. Length = 268

>gnl|CDD|173703 cd05612, STKc_PRKX_like, Catalytic domain of PRKX-like Protein Serine/Threonine Kinases

 Score = 54.0 bits (130), Expect = 1e-07
 Identities = 32/74 (43%), Positives = 44/74 (59%), Gaps = 11/74 (14%)

Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTL-A 737
           I  +LEYLH   S  I++ DLKP N+LLD++    ++DFG AK      +L  +T TL  
Sbjct: 110 IVCALEYLH---SKEIVYRDLKPENILLDKEGHIKLTDFGFAK------KLRDRTWTLCG 160

Query: 738 TIGYMAPE-YGTKG 750
           T  Y+APE   +KG
Sbjct: 161 TPEYLAPEVIQSKG 174

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyte/macrophage lineage differentiation, renal cell epithelial migration, and tubular morphogenesis in the developing kidney. Length = 291

>gnl|CDD|143356 cd07851, STKc_p38, Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase

 Score = 53.8 bits (130), Expect = 2e-07
 Identities = 27/63 (42%), Positives = 36/63 (57%), Gaps = 8/63 (12%)

Query: 683 LEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYM 742
           L+Y+H   S  IIH DLKPSN+ ++ED    I DFG+A+         + T  +AT  Y 
Sbjct: 131 LKYIH---SAGIIHRDLKPSNIAVNEDCELKILDFGLARHTD-----DEMTGYVATRWYR 182

Query: 743 APE 745
           APE
Sbjct: 183 APE 185

Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. p38 substrates include other protein kinases and factors that regulate transcription, nuclear export, mRNA stability and translation. p38 kinases are drug targets for the inflammatory diseases psoriasis, rheumatoid arthritis, and chronic pulmonary disease. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta, which show varying substrate specificity and expression patterns. p38alpha and p38beta are ubiquitously expressed, p38gamma is predominantly found in skeletal muscle, and p38delta is found in the heart, lung, testis, pancreas, and small intestine. Length = 343

>gnl|CDD|173666 cd05575, STKc_SGK, Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase

 Score = 53.6 bits (129), Expect = 2e-07
 Identities = 44/108 (40%), Positives = 55/108 (50%), Gaps = 22/108 (20%)

Query: 640 NGMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVKIISSSLEYLHFGHSIPIIHCDL 699
           NG E+    FH Q ER   SF    E R R         I+S+L YLH   S+ II+ DL
Sbjct: 79  NGGEL---FFHLQRER---SFP---EPRARFYAAE----IASALGYLH---SLNIIYRDL 122

Query: 700 KPSNVLLDEDMVAHISDFGIAKLLSGED-QLSKQTQTL-ATIGYMAPE 745
           KP N+LLD      ++DFG+ K    E  + SK T T   T  Y+APE
Sbjct: 123 KPENILLDSQGHVVLTDFGLCK----EGIEHSKTTSTFCGTPEYLAPE 166

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell proliferation, and apoptosis. Length = 323

>gnl|CDD|143345 cd07840, STKc_CDK9_like, Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

 Score = 53.3 bits (129), Expect = 2e-07
 Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 8/74 (10%)

Query: 683 LEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYM 742
           LE L + HS  I+H D+K SN+L++ D V  ++DFG+A+  +     +  T  + T+ Y 
Sbjct: 110 LEGLQYLHSNGILHRDIKGSNILINNDGVLKLADFGLARPYTKR-NSADYTNRVITLWYR 168

Query: 743 APE-------YGTK 749
            PE       YG +
Sbjct: 169 PPELLLGATRYGPE 182

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA polymerase II and participate in regulating mutliple steps of gene expression including transcription elongation and RNA processing. CDK9 and CdkC associate with T-type cyclins while BUR1 associates with the cyclin BUR2. CDK12 is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 interacts with cyclins L1 and L2, and participates in regulating transcription and alternative splicing. Length = 287

>gnl|CDD|173637 cd05059, PTKc_Tec_like, Catalytic domain of Tec-like Protein Tyrosine Kinases

 Score = 52.8 bits (127), Expect = 2e-07
 Identities = 33/95 (34%), Positives = 49/95 (51%), Gaps = 9/95 (9%)

Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLAT 738
           +  ++EYL    S   IH DL   N L+ ED V  +SDFG+A+ +  +DQ +    T   
Sbjct: 109 VCEAMEYLE---SNGFIHRDLAARNCLVGEDNVVKVSDFGLARYVL-DDQYTSSQGTKFP 164

Query: 739 IGYMAPEYGTKGRVSTRGDVCSFGII-----SGGK 768
           + +  PE     R S++ DV SFG++     S GK
Sbjct: 165 VKWAPPEVFDYSRFSSKSDVWSFGVLMWEVFSEGK 199

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, some members contain the Tec homology (TH) domain, which contains proline-rich and zinc-binding regions. Tec kinases form the second largest subfamily of nRTKs and are expressed mainly by haematopoietic cells, although Tec and Bmx are also found in endothelial cells. B-cells express Btk and Tec, while T-cells express Itk, Txk, and Tec. Collectively, Tec kinases are expressed in a variety of myeloid cells such as mast cells, platelets, macrophages, and dendritic cells. Each Tec kinase shows a distinct cell-type pattern of expression. The function of Tec kinases in lymphoid cells have been studied extensively. They play important roles in the development, differentiation, maturation, regulation, survival, and function of B-cells and T-cells. Mutations in Btk cause the severe B-cell immunodeficiency, X-linked agammaglobulinaemia (XLA). Length = 256

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 54.1 bits (130), Expect = 3e-07
 Identities = 28/76 (36%), Positives = 45/76 (59%), Gaps = 1/76 (1%)

Query: 342 LDGILPKSIGNFSLSLETILMANCSISGNIPQVVGNLSNLLVLELGGNNLTGPIPVTFSQ 401
           L G +P  I      L++I ++  SI GNIP  +G++++L VL+L  N+  G IP +  Q
Sbjct: 430 LRGFIPNDISKLR-HLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQ 488

Query: 402 LQTLQAFDLTRNKLAG 417
           L +L+  +L  N L+G
Sbjct: 489 LTSLRILNLNGNSLSG 504

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 53.7 bits (129), Expect = 3e-07
 Identities = 30/87 (34%), Positives = 50/87 (57%), Gaps = 3/87 (3%)

Query: 162 LGFNN--LSGAIPKEIGNLTKLKEIISTITNSTVCEIPREIGNLPYLARLALATNNLVGV 219
           LG +N  L G IP +I  L  L+ I +   NS    IP  +G++  L  L L+ N+  G 
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSI-NLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481

Query: 220 VPVTIFNMSALKEISLLNNSLSGSLPS 246
           +P ++  +++L+ ++L  NSLSG +P+
Sbjct: 482 IPESLGQLTSLRILNLNGNSLSGRVPA 508

Length = 623

>gnl|CDD|132938 cd06607, STKc_TAO, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins

 Score = 52.9 bits (127), Expect = 3e-07
 Identities = 37/114 (32%), Positives = 55/114 (48%), Gaps = 10/114 (8%)

Query: 654 ERALKSFEDECEV-RKRIRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVA 712
           E  L S  D  EV +K ++   +  I   +L+ L + HS   IH D+K  N+LL E    
Sbjct: 95  EYCLGSASDILEVHKKPLQEVEIAAICHGALQGLAYLHSHERIHRDIKAGNILLTEPGTV 154

Query: 713 HISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEY---GTKGRVSTRGDVCSFGI 763
            ++DFG A L+S  +        + T  +MAPE      +G+   + DV S GI
Sbjct: 155 KLADFGSASLVSPANSF------VGTPYWMAPEVILAMDEGQYDGKVDVWSLGI 202

Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily members, named TAO1, TAO2, and TAO3. Length = 307

>gnl|CDD|133212 cd05081, PTKc_Jak2_Jak3_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

 Score = 52.8 bits (127), Expect = 3e-07
 Identities = 44/168 (26%), Positives = 70/168 (41%), Gaps = 44/168 (26%)

Query: 641 GMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVKI--ISSS---------LEYLHFG 689
           G  VAVK         L+ FE E E+ K ++H N+VK   +  S         +EYL +G
Sbjct: 33  GEVVAVKKLQHSTAEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLRLVMEYLPYG 92

Query: 690 --------------------HSIPI------------IHCDLKPSNVLLDEDMVAHISDF 717
                               ++  I            +H DL   N+L++ +    I DF
Sbjct: 93  SLRDYLQKHRERLDHRKLLLYASQICKGMEYLGSKRYVHRDLATRNILVESENRVKIGDF 152

Query: 718 GIAKLLSGEDQLSKQTQT-LATIGYMAPEYGTKGRVSTRGDVCSFGII 764
           G+ K+L  + +  K  +   + I + APE  T+ + S   DV SFG++
Sbjct: 153 GLTKVLPQDKEYYKVREPGESPIFWYAPESLTESKFSVASDVWSFGVV 200

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jak2 is widely expressed in many tissues while Jak3 is expressed only in hematopoietic cells. Jak2 is essential for the signaling of hormone-like cytokines such as growth hormone, erythropoietin, thrombopoietin, and prolactin, as well as some IFNs and cytokines that signal through the IL-3 and gp130 receptors. Jak3 binds the shared receptor subunit common gamma chain and thus, is essential in the signaling of cytokines that use it such as IL-2, IL-4, IL-7, IL-9, IL-15, and IL-21. Disruption of Jak2 in mice results in an embryonic lethal phenotype with multiple defects including erythropoietic and cardiac abnormalities. It is the only Jak gene that results in a lethal phenotype when disrupted in mice. A mutation in the pseudokinase domain of Jak2, V617F, is present in many myeloproliferative diseases, including almost all patients with polycythemia vera, and 50% of patients with essential thrombocytosis and myelofibrosis. Jak3 is important in lymphoid development and myeloid cell differentiation. Inactivating mutations in Jak3 have been reported in humans with severe combined immunodeficiency (SCID). Length = 284

>gnl|CDD|173699 cd05608, STKc_GRK1, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 1

 Score = 52.5 bits (126), Expect = 3e-07
 Identities = 33/68 (48%), Positives = 39/68 (57%), Gaps = 7/68 (10%)

Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIA-KLLSGEDQLSKQTQTLA 737
           I S LE+LH      II+ DLKP NVLLD D    ISD G+A +L  G+   SK      
Sbjct: 106 IISGLEHLHQRR---IIYRDLKPENVLLDNDGNVRISDLGLAVELKDGQ---SKTKGYAG 159

Query: 738 TIGYMAPE 745
           T G+MAPE
Sbjct: 160 TPGFMAPE 167

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual group of GRKs and is expressed in retinal cells. It phosphorylates rhodopsin in rod cells, which leads to termination of the phototransduction cascade. Mutations in GRK1 are associated to a recessively inherited form of stationary nightblindness called Oguchi disease. Length = 280

>gnl|CDD|173663 cd05572, STKc_cGK_PKG, Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase

 Score = 52.2 bits (126), Expect = 3e-07
 Identities = 27/64 (42%), Positives = 35/64 (54%), Gaps = 8/64 (12%)

Query: 683 LEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTL-ATIGY 741
            EYLH   +  II+ DLKP N+LLD +    + DFG AK L       ++T T   T  Y
Sbjct: 106 FEYLH---NRGIIYRDLKPENLLLDSNGYVKLVDFGFAKKLKS----GQKTWTFCGTPEY 158

Query: 742 MAPE 745
           +APE
Sbjct: 159 VAPE 162

Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowing autophosphorylation and activation of the kinase. cGKI is a soluble protein expressed in all smooth muscles, platelets, cerebellum, and kidney. It is also expressed at lower concentrations in other tissues. cGKII is a membrane-bound protein that is most abundantly expressed in the intestine. It is also present in the brain nuclei, adrenal cortex, kidney, lung, and prostate. cGKI is involved in the regulation of smooth muscle tone, smooth cell proliferation, and platelet activation. cGKII plays a role in the regulation of secretion, such as renin secretion by the kidney and aldosterone secretion by the adrenal. It also regulates bone growth and the circadian rhythm. Length = 262

>gnl|CDD|133220 cd05089, PTKc_Tie1, Catalytic domain of the Protein Tyrosine Kinase, Tie1

 Score = 52.7 bits (126), Expect = 3e-07
 Identities = 34/125 (27%), Positives = 57/125 (45%), Gaps = 9/125 (7%)

Query: 659 SFEDECEVRKRIRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFG 718
           +F  E      +  + L++  S     + +      IH DL   NVL+ E++ + I+DFG
Sbjct: 105 AFAKEHGTASTLTSQQLLQFASDVATGMQYLSEKQFIHRDLAARNVLVGENLASKIADFG 164

Query: 719 IAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII------SGGKETRS 772
           +++   GE+   K+T     + +MA E       +T+ DV SFG++       GG     
Sbjct: 165 LSR---GEEVYVKKTMGRLPVRWMAIESLNYSVYTTKSDVWSFGVLLWEIVSLGGTPYCG 221

Query: 773 MTVGE 777
           MT  E
Sbjct: 222 MTCAE 226

Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations. In vivo studies of Tie1 show that it is critical in vascular development. Length = 297

>gnl|CDD|133243 cd05112, PTKc_Itk, Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

 Score = 52.3 bits (125), Expect = 3e-07
 Identities = 27/86 (31%), Positives = 47/86 (54%), Gaps = 4/86 (4%)

Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLAT 738
           +   + YL    S  +IH DL   N L+ E+ V  +SDFG+ + +  +DQ +  T T   
Sbjct: 109 VCEGMAYLE---SSNVIHRDLAARNCLVGENQVVKVSDFGMTRFVL-DDQYTSSTGTKFP 164

Query: 739 IGYMAPEYGTKGRVSTRGDVCSFGII 764
           + + +PE  +  + S++ DV SFG++
Sbjct: 165 VKWSSPEVFSFSKYSSKSDVWSFGVL 190

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, Itk contains the Tec homology (TH) domain containing one proline-rich region and a zinc-binding region. Tec kinases are expressed mainly by haematopoietic cells. Itk is expressed in T-cells and mast cells, and is important in their development and differentiation. Of the three Tec kinases expressed in T-cells, Itk plays the predominant role in T-cell receptor (TCR) signaling. It is activated by phosphorylation upon TCR crosslinking and is involved in the pathway resulting in phospholipase C-gamma1 activation and actin polymerization. It also plays a role in the downstream signaling of the T-cell costimulatory receptor CD28, the T-cell surface receptor CD2, and the chemokine receptor CXCR4. In addition, Itk is crucial for the development of T-helper(Th)2 effector responses. Length = 256

>gnl|CDD|173739 cd07838, STKc_CDK4_6_like, Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases

 Score = 52.3 bits (126), Expect = 3e-07
 Identities = 26/73 (35%), Positives = 43/73 (58%), Gaps = 6/73 (8%)

Query: 673 RNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQ 732
           ++L++ +   +++LH   S  I+H DLKP N+L+  D    I+DFG+A++ S E      
Sbjct: 110 KDLMRQLLRGVDFLH---SHRIVHRDLKPQNILVTSDGQVKIADFGLARIYSFE---MAL 163

Query: 733 TQTLATIGYMAPE 745
           T  + T+ Y APE
Sbjct: 164 TSVVVTLWYRAPE 176

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both expressed ubiquitously, associate with all three D cyclins (D1, D2 and D3), and phosphorylate the retinoblastoma (pRb) protein. They are also regulated by the INK4 family of inhibitors which associate with either the CDK alone or the CDK/cyclin complex. CDK4 and CDK6 show differences in subcellular localization, sensitivity to some inhibitors, timing in activation, tumor selectivity, and possibly substrate profiles. Although CDK4 and CDK6 seem to show some redundancy, they also have discrete, nonoverlapping functions. CDK6 plays an important role in cell differentiation. Length = 287

>gnl|CDD|173771 cd08529, STKc_FA2-like, Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

 Score = 52.1 bits (125), Expect = 4e-07
 Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 2/79 (2%)

Query: 686 LHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPE 745
           L   HS  I+H D+K  N+ LD      I D G+AKLLS     +     + T  Y++PE
Sbjct: 114 LAHLHSKKILHRDIKSLNLFLDAYDNVKIGDLGVAKLLSDNTNFAN--TIVGTPYYLSPE 171

Query: 746 YGTKGRVSTRGDVCSFGII 764
                  + + DV + G++
Sbjct: 172 LCEDKPYNEKSDVWALGVV 190

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cycle progression. No cellular function has yet been ascribed to CNK4. Length = 256

>gnl|CDD|173634 cd05053, PTKc_FGFR, Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors

 Score = 52.0 bits (125), Expect = 4e-07
 Identities = 34/109 (31%), Positives = 54/109 (49%), Gaps = 6/109 (5%)

Query: 659 SFEDECEVRKRIRHRNLVKI---ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHIS 715
           S +D     + +  ++LV     ++  +E+L    S   IH DL   NVL+ ED V  I+
Sbjct: 118 SPDDPRPPEETLTQKDLVSFAYQVARGMEFLA---SKKCIHRDLAARNVLVTEDHVMKIA 174

Query: 716 DFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
           DFG+A+ +   D   K T     + +MAPE       + + DV SFG++
Sbjct: 175 DFGLARDIHHIDYYRKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVL 223

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation, and intracellular signaling. There are at least 23 FGFs and four types of FGFRs. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. FGF/FGFR signaling is important in the regulation of embryonic development, homeostasis, and regenerative processes. Depending on the cell type and stage, FGFR signaling produces diverse cellular responses including proliferation, growth arrest, differentiation, and apoptosis. Aberrant signaling leads to many human diseases such as skeletal, olfactory, and metabolic disorders, as well as cancer. Length = 293

>gnl|CDD|173630 cd05044, PTKc_c-ros, Catalytic domain of the Protein Tyrosine Kinase, C-ros

 Score = 51.8 bits (124), Expect = 4e-07
 Identities = 32/87 (36%), Positives = 46/87 (52%), Gaps = 11/87 (12%)

Query: 683 LEYLHFGHSIPIIHCDLKPSNVLLDE-----DMVAHISDFGIAKLLSGEDQLSKQTQTLA 737
           LE +HF      IH DL   N L+ E     D V  I DFG+A+ +   D   K+ + L 
Sbjct: 122 LEQMHF------IHRDLAARNCLVSEKGYDADRVVKIGDFGLARDIYKSDYYRKEGEGLL 175

Query: 738 TIGYMAPEYGTKGRVSTRGDVCSFGII 764
            + +MAPE    G+ +T+ DV SFG++
Sbjct: 176 PVRWMAPESLLDGKFTTQSDVWSFGVL 202

Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male mice bearing inactive mutations of c-ros lack the initial segment of the epididymis and are infertile. The Drosophila protein, Sevenless, is required for the specification of the R7 photoreceptor cell during eye development. Length = 269

>gnl|CDD|173645 cd05084, PTKc_Fes, Catalytic domain of the Protein Tyrosine Kinase, Fes

 Score = 51.6 bits (123), Expect = 5e-07
 Identities = 35/101 (34%), Positives = 54/101 (53%), Gaps = 10/101 (9%)

Query: 669 RIRHRNLVKII---SSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSG 725
           R++ + L++++   ++ +EYL   H I   H DL   N L+ E  V  ISDFG+++    
Sbjct: 90  RLKVKELIQMVENAAAGMEYLESKHCI---HRDLAARNCLVTEKNVLKISDFGMSR--EE 144

Query: 726 EDQLSKQTQTLATI--GYMAPEYGTKGRVSTRGDVCSFGII 764
           ED +   T  +  I   + APE    GR S+  DV SFGI+
Sbjct: 145 EDGVYASTGGMKQIPVKWTAPEALNYGRYSSESDVWSFGIL 185

Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular endothelial, epithelial, and neuronal cells. It plays important roles in cell growth and differentiation, angiogenesis, inflammation and immunity, and cytoskeletal regulation. A recent study implicates Fes kinase as a tumor suppressor in colorectal cancer. Length = 252

>gnl|CDD|173760 cd08220, STKc_Nek8, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8

 Score = 51.8 bits (124), Expect = 5e-07
 Identities = 39/158 (24%), Positives = 64/158 (40%), Gaps = 46/158 (29%)

Query: 650 HQQYERALKSFEDECEVRKRIRHRNLVKIISSSLE------------------------- 684
            Q  +    + ++EC+V K + H N+++   + LE                         
Sbjct: 36  EQMTKDERLAAQNECQVLKLLSHPNIIEYYENFLEDKALMIVMEYAPGGTLAEYIQKRCN 95

Query: 685 -----------------YLHFGHSIPIIHCDLKPSNVLLDE-DMVAHISDFGIAKLLSGE 726
                             LH  H+  I+H DLK  N+LLD+  MV  I DFGI+K+LS +
Sbjct: 96  SLLDEDTILHFFVQILLALHHVHTKLILHRDLKTQNILLDKHKMVVKIGDFGISKILSSK 155

Query: 727 DQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
              SK    + T  Y++PE       + + D+ + G +
Sbjct: 156 ---SKAYTVVGTPCYISPELCEGKPYNQKSDIWALGCV 190

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with a rare form of juvenile renal cystic disease, nephronophthisis type 9. It has been suggested that a defect in the ciliary localization of Nek8 contributes to the development of cysts manifested by these diseases. Length = 256

>gnl|CDD|173652 cd05100, PTKc_FGFR3, Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3

 Score = 52.3 bits (125), Expect = 5e-07
 Identities = 54/171 (31%), Positives = 81/171 (47%), Gaps = 22/171 (12%)

Query: 642 MEVAVKVFHQQYERALK------SFEDECEV-RKRIRHRNLVKI---ISSSLEYLHFGHS 691
           +E A K   ++Y RA +      SF D C++  +++  ++LV     ++  +EYL    S
Sbjct: 97  VEYASKGNLREYLRARRPPGMDYSF-DTCKLPEEQLTFKDLVSCAYQVARGMEYLA---S 152

Query: 692 IPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGR 751
              IH DL   NVL+ ED V  I+DFG+A+ +   D   K T     + +MAPE     R
Sbjct: 153 QKCIHRDLAARNVLVTEDNVMKIADFGLARDVHNIDYYKKTTNGRLPVKWMAPE-ALFDR 211

Query: 752 VST-RGDVCSFGII------SGGKETRSMTVGETCTPVRESKYEVHPATTT 795
           V T + DV SFG++       GG     + V E    ++E      PA  T
Sbjct: 212 VYTHQSDVWSFGVLLWEIFTLGGSPYPGIPVEELFKLLKEGHRMDKPANCT 262

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. Many FGFR3 splice variants have been reported with the IIIb and IIIc isoforms being the predominant forms. FGFR3 IIIc is the isoform expressed in chondrocytes, the cells affected in dwarfism, while IIIb is expressed in epithelial cells. FGFR3 ligands include FGF1, FGF2, FGF4, FGF8, FGF9, and FGF23. It is a negative regulator of long bone growth. In the cochlear duct and in the lens, FGFR3 is involved in differentiation while it appears to have a role in cell proliferation in epithelial cells. Germline mutations in FGFR3 are associated with skeletal disorders including several forms of dwarfism. Some missense mutations are associated with multiple myeloma and carcinomas of the bladder and cervix. Overexpression of FGFR3 is found in thyroid carcinoma. Length = 334

>gnl|CDD|132985 cd06654, STKc_PAK1, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1

 Score = 52.0 bits (124), Expect = 5e-07
 Identities = 29/91 (31%), Positives = 48/91 (52%), Gaps = 2/91 (2%)

Query: 675 LVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQ 734
           +  +    L+ L F HS  +IH D+K  N+LL  D    ++DFG    ++ E   SK++ 
Sbjct: 118 IAAVCRECLQALEFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQ--SKRST 175

Query: 735 TLATIGYMAPEYGTKGRVSTRGDVCSFGIIS 765
            + T  +MAPE  T+     + D+ S GI++
Sbjct: 176 MVGTPYWMAPEVVTRKAYGPKVDIWSLGIMA 206

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). PAK1 is important in the regulation of many cellular processes including cytoskeletal dynamics, cell motility, growth, and proliferation. Although PAK1 has been regarded mainly as a cytosolic protein, recent reports indicate that PAK1 also exists in significant amounts in the nucleus, where it is involved in transcription modulation and in cell cycle regulatory events. PAK1 is also involved in transformation and tumorigenesis. Its overexpression, hyperactivation and increased nuclear accumulation is correlated to breast cancer invasiveness and progression. Nuclear accumulation is also linked to tamoxifen resistance in breast cancer cells. Length = 296

>gnl|CDD|133193 cd05062, PTKc_IGF-1R, Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor

 Score = 51.6 bits (123), Expect = 5e-07
 Identities = 34/156 (21%), Positives = 72/156 (46%), Gaps = 2/156 (1%)

Query: 609 INSPQAIRRFSYHELLRATDRFSENNLIGIGNGMEVAVKVFHQQYERALKSFEDECEVRK 668
           +N    ++ F+ H ++R     S+     +   ME+  +   + Y R+L+   +   V+ 
Sbjct: 57  LNEASVMKEFNCHHVVRLLGVVSQGQPTLVI--MELMTRGDLKSYLRSLRPEMENNPVQA 114

Query: 669 RIRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQ 728
               + ++++     + + + ++   +H DL   N ++ ED    I DFG+ + +   D 
Sbjct: 115 PPSLKKMIQMAGEIADGMAYLNANKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDY 174

Query: 729 LSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
             K  + L  + +M+PE    G  +T  DV SFG++
Sbjct: 175 YRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVV 210

Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, where it is frequently overexpressed, IGF-1R is implicated in proliferation, the suppression of apoptosis, invasion, and metastasis. IGF-1R is being developed as a therapeutic target in cancer treatment. Length = 277

>gnl|CDD|173770 cd08528, STKc_Nek10, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10

 Score = 51.3 bits (123), Expect = 6e-07
 Identities = 37/97 (38%), Positives = 48/97 (49%), Gaps = 17/97 (17%)

Query: 674 NLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQT 733
           N+   +  +L YLH      I+H DL P+N++L ED    I+DFG+AK    E   SK T
Sbjct: 117 NIFVQMVLALRYLH--KEKRIVHRDLTPNNIMLGEDDKVTITDFGLAKQKQPE---SKLT 171

Query: 734 QTLATIGYMAPE------YGTKGRVSTRGDVCSFGII 764
             + TI Y  PE      YG K       DV +FG I
Sbjct: 172 SVVGTILYSCPEIVKNEPYGEK------ADVWAFGCI 202

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24. Length = 269

>gnl|CDD|173631 cd05045, PTKc_RET, Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein

 Score = 51.5 bits (123), Expect = 7e-07
 Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 3/86 (3%)

Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLAT 738
           IS  ++YL     + ++H DL   NVL+ E     ISDFG+++ +  ED   K+++    
Sbjct: 136 ISRGMQYLA---EMKLVHRDLAARNVLVAEGRKMKISDFGLSRDVYEEDSYVKRSKGRIP 192

Query: 739 IGYMAPEYGTKGRVSTRGDVCSFGII 764
           + +MA E       +T+ DV SFG++
Sbjct: 193 VKWMAIESLFDHIYTTQSDVWSFGVL 218

Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leading to autophosphorylation, activation, and intracellular signaling. RET is essential for the development of the sympathetic, parasympathetic and enteric nervous systems, and the kidney. RET disruption by germline mutations causes diseases in humans including congenital aganglionosis of the gastrointestinal tract (Hirschsprung's disease) and three related inherited cancers: multiple endocrine neoplasia type 2A (MEN2A), MEN2B, and familial medullary thyroid carcinoma (FMTC). Length = 290

>gnl|CDD|133172 cd05040, PTKc_Ack_like, Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase

 Score = 51.2 bits (123), Expect = 7e-07
 Identities = 26/86 (30%), Positives = 35/86 (40%), Gaps = 4/86 (4%)

Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAK-LLSGEDQLSKQTQTLA 737
           I++ + YL        IH DL   N+LL  D    I DFG+ + L   ED    +     
Sbjct: 106 IANGMRYLESKR---FIHRDLAARNILLASDDKVKIGDFGLMRALPQNEDHYVMEEHLKV 162

Query: 738 TIGYMAPEYGTKGRVSTRGDVCSFGI 763
              + APE       S   DV  FG+
Sbjct: 163 PFAWCAPESLRTRTFSHASDVWMFGV 188

Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with androgen-independent prostate cancer progression. Tnk1 regulates TNFalpha signaling and may play an important role in cell death. Length = 257

>gnl|CDD|219766 pfam08263, LRRNT_2, Leucine rich repeat N-terminal domain

 Score = 46.2 bits (110), Expect = 7e-07
 Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 2/38 (5%)

Query: 12 QALLALKAHISYDHTNLFARNWTSSTSV-CIWIGITCD 48
           ALLA K+ ++ D +   + +W  S+S  C W G+TCD
Sbjct: 6  DALLAFKSSLNGDPSGALS-SWNPSSSDPCSWTGVTCD 42

Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats. Length = 42

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 52.1 bits (125), Expect = 8e-07
 Identities = 29/97 (29%), Positives = 48/97 (49%), Gaps = 5/97 (5%)

Query: 255 VETLNLGINSFSGTIPSSITNSSKLSDLELGENLFSGFIPNTIGNLRNLEFGNIADNYLT 314
           ++ L L      G IP+ I+    L  + L  N   G IP ++G++ +LE  +++ N   
Sbjct: 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFN 479

Query: 315 SSTPELSFLSSLTNCKKLKVLIVTGNPLDGILPKSIG 351
            S PE     SL     L++L + GN L G +P ++G
Sbjct: 480 GSIPE-----SLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|173698 cd05607, STKc_GRK7, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7

 Score = 51.1 bits (122), Expect = 8e-07
 Identities = 27/60 (45%), Positives = 35/60 (58%), Gaps = 4/60 (6%)

Query: 686 LHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPE 745
           LH  HS+ I++ D+KP NVLLD+     +SD G+A  L     +   TQ   T GYMAPE
Sbjct: 109 LHL-HSMDIVYRDMKPENVLLDDQGNCRLSDLGLAVELKDGKTI---TQRAGTNGYMAPE 164

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual group of GRKs. It is primarily found in the retina and plays a role in the regulation of opsin light receptors. GRK7 is located in retinal cone outer segments and plays an important role in regulating photoresponse of the cones. Length = 277

>gnl|CDD|132960 cd06629, STKc_MAPKKK_Bck1_like, Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

 Score = 51.0 bits (122), Expect = 8e-07
 Identities = 32/98 (32%), Positives = 50/98 (51%), Gaps = 13/98 (13%)

Query: 673 RNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAK----LLSGEDQ 728
           R   + +   L YLH   S  I+H DLK  N+L+D D +  ISDFGI+K    +   +  
Sbjct: 111 RFFTEQVLEGLAYLH---SKGILHRDLKADNLLVDADGICKISDFGISKKSDDIYDNDQN 167

Query: 729 LSKQTQTLATIGYMAPEY-GTKGR-VSTRGDVCSFGII 764
           +S Q     ++ +MAPE   +  +  S + D+ S G +
Sbjct: 168 MSMQ----GSVFWMAPEVIHSYSQGYSAKVDIWSLGCV 201

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell integrity MAPK pathway, which is activated by stresses and aggressions to the cell wall. The MAPKKK Bck1, MAPKKs Mkk1 and Mkk2, and the MAPK Slt2 make up the cascade that is important in the maintenance of cell wall homeostasis. Fission yeast Mkh1 is involved in MAPK cascades regulating cell morphology, cell wall integrity, salt resistance, and filamentous growth in response to stress. Length = 272

>gnl|CDD|132947 cd06616, PKc_MKK4, Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4

 Score = 51.2 bits (123), Expect = 9e-07
 Identities = 36/106 (33%), Positives = 52/106 (49%), Gaps = 17/106 (16%)

Query: 667 RKRIRHRNLVKIISSSLEYL-HFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSG 725
           +  I    L KI  ++++ L +    + IIH D+KPSN+LLD +    + DFGI+  L  
Sbjct: 101 KSVIPEEILGKIAVATVKALNYLKEELKIIHRDVKPSNILLDRNGNIKLCDFGISGQL-- 158

Query: 726 EDQLSKQTQTLATIGYMAPEYGTKGRVST--------RGDVCSFGI 763
            D ++K T+      YMAPE     R+          R DV S GI
Sbjct: 159 VDSIAK-TRDAGCRPYMAPE-----RIDPSARDGYDVRSDVWSLGI 198

Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates the downstream targets, c-Jun N-terminal kinase (JNK) and p38 MAPK, on specific threonine and tyrosine residues. JNK and p38 are collectively known as stress-activated MAPKs, as they are activated in response to a variety of environmental stresses and pro-inflammatory cytokines. Their activation is associated with the induction of cell death. Mice deficient in MKK4 die during embryogenesis and display anemia, severe liver hemorrhage, and abnormal hepatogenesis. MKK4 may also play roles in the immune system and in cardiac hypertrophy. It plays a major role in cancer as a tumor and metastasis suppressor. Under certain conditions, MKK4 is pro-oncogenic. Length = 288

>gnl|CDD|132951 cd06620, PKc_MAPKK_Byr1_like, Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases

 Score = 51.0 bits (122), Expect = 9e-07
 Identities = 32/90 (35%), Positives = 47/90 (52%), Gaps = 9/90 (10%)

Query: 677 KIISSSLE---YLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQT 733
           KI  + +E   YL+  H I  +H D+KPSN+L++      + DFG+    SGE   S   
Sbjct: 107 KIAVAVVEGLTYLYNVHRI--MHRDIKPSNILVNSRGQIKLCDFGV----SGELINSIAD 160

Query: 734 QTLATIGYMAPEYGTKGRVSTRGDVCSFGI 763
             + T  YM+PE    G+ + + DV S GI
Sbjct: 161 TFVGTSTYMSPERIQGGKYTVKSDVWSLGI 190

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include the MAPKKs Byr1 from Schizosaccharomyces pombe, FUZ7 from Ustilago maydis, and related proteins. Byr1 phosphorylates its downstream target, the MAPK Spk1, and is regulated by the MAPKKK Byr2. The Spk1 cascade is pheromone-responsive and is essential for sporulation and sexual differentiation in fission yeast. FUZ7 phosphorylates and activates its target, the MAPK Crk1, which is required in mating and virulence in U. maydis. Length = 284

>gnl|CDD|88330 cd05047, PTKc_Tie, Catalytic domain of Tie Protein Tyrosine Kinases

 Score = 50.5 bits (120), Expect = 1e-06
 Identities = 31/125 (24%), Positives = 54/125 (43%), Gaps = 9/125 (7%)

Query: 659 SFEDECEVRKRIRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFG 718
           +F         +  + L+   +     + +      IH DL   N+L+ E+ VA I+DFG
Sbjct: 98  AFAIANSTASTLSSQQLLHFAADVARGMDYLSQKQFIHRDLAARNILVGENYVAKIADFG 157

Query: 719 IAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII------SGGKETRS 772
           +++   G++   K+T     + +MA E       +T  DV S+G++       GG     
Sbjct: 158 LSR---GQEVYVKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCG 214

Query: 773 MTVGE 777
           MT  E
Sbjct: 215 MTCAE 219

Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific ligand has been identified for Tie1. The binding of Ang-1 to Tie2 leads to receptor autophosphorylation and activation, promoting cell migration and survival. In contrast, Ang-2 binding to Tie2 does not result in the same response, suggesting that Ang-2 may function as an antagonist. In vivo studies of Tie1 show that it is critical in vascular development. Length = 270

>gnl|CDD|133180 cd05049, PTKc_Trk, Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

 Score = 50.9 bits (122), Expect = 1e-06
 Identities = 31/96 (32%), Positives = 48/96 (50%), Gaps = 12/96 (12%)

Query: 675 LVKI---ISSSLEYL---HFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQ 728
           L++I   I+S + YL   HF      +H DL   N L+  D+V  I DFG+++ +   D 
Sbjct: 124 LLQIAVQIASGMVYLASQHF------VHRDLATRNCLVGYDLVVKIGDFGMSRDVYTTDY 177

Query: 729 LSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
                 T+  I +M PE     + +T  DV SFG++
Sbjct: 178 YRVGGHTMLPIRWMPPESIMYRKFTTESDVWSFGVV 213

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalytic domain. Trk receptors are mainly expressed in the peripheral and central nervous systems. They play important roles in cell fate determination, neuronal survival and differentiation, as well as in the regulation of synaptic plasticity. Altered expression of Trk receptors is associated with many human diseases. Length = 280

>gnl|CDD|173750 cd07857, STKc_MPK1, Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1

 Score = 50.9 bits (122), Expect = 1e-06
 Identities = 36/109 (33%), Positives = 50/109 (45%), Gaps = 18/109 (16%)

Query: 674 NLVKIISSS--LEYLHFG-------------HSIPIIHCDLKPSNVLLDEDMVAHISDFG 718
           +L +II S   L   HF              HS  ++H DLKP N+L++ D    I DFG
Sbjct: 91  DLHQIIRSGQPLTDAHFQSFIYQILCGLKYIHSANVLHRDLKPGNLLVNADCELKICDFG 150

Query: 719 IAKLLSG--EDQLSKQTQTLATIGYMAPEYGTKGRVSTRG-DVCSFGII 764
           +A+  S    +     T+ +AT  Y APE     +  T+  DV S G I
Sbjct: 151 LARGFSENPGENAGFMTEYVATRWYRAPEIMLSFQSYTKAIDVWSVGCI 199

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall construction, morphogenesis, and ion homeostasis. MPK1 is activated in response to cell wall stress including heat stimulation, osmotic shock, UV irradiation, and any agents that interfere with cell wall biogenesis such as chitin antagonists, caffeine, or zymolase. MPK1 is regulated by the MAP2Ks Mkk1/2, which are regulated by the MAP3K Bck1. Pmk1 is also activated by multiple stresses including elevated temperatures, hyper- or hypotonic stress, glucose deprivation, exposure to cell-wall damaging compounds, and oxidative stress. It is regulated by the MAP2K Pek1, which is regulated by the MAP3K Mkh1. Length = 332

>gnl|CDD|173763 cd08223, STKc_Nek4, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4

 Score = 50.4 bits (120), Expect = 1e-06
 Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 5/84 (5%)

Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLAT 738
           I+ +L+YLH  H   I+H DLK  NV L    +  + D GIA++L  E+Q    +  + T
Sbjct: 111 IAMALQYLHEKH---ILHRDLKTQNVFLTRTNIIKVGDLGIARVL--ENQCDMASTLIGT 165

Query: 739 IGYMAPEYGTKGRVSTRGDVCSFG 762
             YM+PE  +    + + DV + G
Sbjct: 166 PYYMSPELFSNKPYNYKSDVWALG 189

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown. Length = 257

>gnl|CDD|133230 cd05099, PTKc_FGFR4, Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4

 Score = 50.7 bits (121), Expect = 1e-06
 Identities = 34/87 (39%), Positives = 47/87 (54%), Gaps = 5/87 (5%)

Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLAT 738
           ++  +EYL    S   IH DL   NVL+ ED V  I+DFG+A+ +   D   K +     
Sbjct: 143 VARGMEYLE---SRRCIHRDLAARNVLVTEDNVMKIADFGLARGVHDIDYYKKTSNGRLP 199

Query: 739 IGYMAPEYGTKGRVST-RGDVCSFGII 764
           + +MAPE     RV T + DV SFGI+
Sbjct: 200 VKWMAPE-ALFDRVYTHQSDVWSFGIL 225

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. Unlike other FGFRs, there is only one splice form of FGFR4. It binds FGF1, FGF2, FGF6, FGF19, and FGF23. FGF19 is a selective ligand for FGFR4. Although disruption of FGFR4 in mice causes no obvious phenotype, in vivo inhibition of FGFR4 in cultured skeletal muscle cells resulted in an arrest of muscle progenitor differentiation. FGF6 and FGFR4 are uniquely expressed in myofibers and satellite cells. FGF6/FGFR4 signaling appears to play a key role in the regulation of muscle regeneration. A polymorphism in FGFR4 is found in head and neck squamous cell carcinoma. Length = 314

>gnl|CDD|133232 cd05101, PTKc_FGFR2, Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2

 Score = 50.4 bits (120), Expect = 1e-06
 Identities = 41/124 (33%), Positives = 59/124 (47%), Gaps = 11/124 (8%)

Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLAT 738
           ++  +EYL    S   IH DL   NVL+ E+ V  I+DFG+A+ ++  D   K T     
Sbjct: 146 VARGMEYLA---SQKCIHRDLAARNVLVTENNVMKIADFGLARDVNNIDYYKKTTNGRLP 202

Query: 739 IGYMAPEYGTKGRVST-RGDVCSFGIIS------GGKETRSMTVGETCTPVRESKYEVHP 791
           + +MAPE     RV T + DV SFG++       GG     + V E    ++E      P
Sbjct: 203 VKWMAPE-ALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVEELFKLLKEGHRMDKP 261

Query: 792 ATTT 795
           A  T
Sbjct: 262 ANCT 265

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. There are many splice variants of FGFR2 which show differential expression and binding to FGF ligands. Disruption of either FGFR2 or FGFR2b is lethal in mice, due to defects in the placenta or severe impairment of tissue development including lung, limb, and thyroid, respectively. Disruption of FGFR2c in mice results in defective bone and skull development. Genetic alterations of FGFR2 are associated with many human skeletal disorders including Apert syndrome, Crouzon syndrome, Jackson-Weiss syndrome, and Pfeiffer syndrome. Length = 304

>gnl|CDD|173732 cd06628, STKc_MAPKKK_Byr2_like, Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

 Score = 50.2 bits (120), Expect = 2e-06
 Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 11/96 (11%)

Query: 673 RNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAK-----LLSGED 727
           RN V+ I   L YLH   +  IIH D+K +N+L+D      ISDFGI+K      LS   
Sbjct: 109 RNFVRQILKGLNYLH---NRGIIHRDIKGANILVDNKGGIKISDFGISKKLEANSLST-- 163

Query: 728 QLSKQTQTL-ATIGYMAPEYGTKGRVSTRGDVCSFG 762
           + +    +L  ++ +MAPE   +   + + D+ S G
Sbjct: 164 KTNGARPSLQGSVFWMAPEVVKQTSYTRKADIWSLG 199

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast Byr2 is regulated by Ras1. It responds to pheromone signaling and controls mating through the MAPK pathway. Budding yeast Ste11 functions in MAPK cascades that regulate mating, high osmolarity glycerol, and filamentous growth responses. Length = 267

>gnl|CDD|132987 cd06656, STKc_PAK3, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3

 Score = 50.5 bits (120), Expect = 2e-06
 Identities = 29/91 (31%), Positives = 48/91 (52%), Gaps = 2/91 (2%)

Query: 675 LVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQ 734
           +  +    L+ L F HS  +IH D+K  N+LL  D    ++DFG    ++ E   SK++ 
Sbjct: 117 IAAVCRECLQALDFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQ--SKRST 174

Query: 735 TLATIGYMAPEYGTKGRVSTRGDVCSFGIIS 765
            + T  +MAPE  T+     + D+ S GI++
Sbjct: 175 MVGTPYWMAPEVVTRKAYGPKVDIWSLGIMA 205

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). PAK3 is highly expressed in the brain. It is implicated in neuronal plasticity, synapse formation, dendritic spine morphogenesis, cell cycle progression, neuronal migration, and apoptosis. Inactivating mutations in the PAK3 gene cause X-linked non-syndromic mental retardation, the severity of which depends on the site of the mutation. Length = 297

>gnl|CDD|133229 cd05098, PTKc_FGFR1, Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1

 Score = 50.4 bits (120), Expect = 2e-06
 Identities = 39/132 (29%), Positives = 63/132 (47%), Gaps = 12/132 (9%)

Query: 642 MEVAVKVFHQQYERALK------SFEDECEVRKRIRHRNLVKI---ISSSLEYLHFGHSI 692
           +E A K   ++Y RA +       +       +++  ++LV     ++  +EYL    S 
Sbjct: 103 VEYASKGNLREYLRARRPPGMEYCYNPTQVPEEQLSFKDLVSCAYQVARGMEYLA---SK 159

Query: 693 PIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRV 752
             IH DL   NVL+ ED V  I+DFG+A+ +   D   K T     + +MAPE       
Sbjct: 160 KCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIY 219

Query: 753 STRGDVCSFGII 764
           + + DV SFG++
Sbjct: 220 THQSDVWSFGVL 231

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. Alternative splicing of FGFR1 transcripts produces a variety of isoforms, which are differentially expressed in cells. FGFR1 binds the ligands, FGF1 and FGF2, with high affinity and has also been reported to bind FGF4, FGF6, and FGF9. FGFR1 signaling is critical in the control of cell migration during embryo development. It promotes cell proliferation in fibroblasts. Nuclear FGFR1 plays a role in the regulation of transcription. Mutations, insertions or deletions of FGFR1 have been identified in patients with Kallman's syndrome (KS), an inherited disorder characterized by hypogonadotropic hypogonadism and loss of olfaction. Aberrant FGFR1 expression has been found in some human cancers including 8P11 myeloproliferative syndrome (EMS), breast cancer, and pancreatic adenocarcinoma. Length = 307

>gnl|CDD|140289 PTZ00263, PTZ00263, protein kinase A catalytic subunit; Provisional

 Score = 50.2 bits (120), Expect = 2e-06
 Identities = 28/65 (43%), Positives = 37/65 (56%), Gaps = 10/65 (15%)

Query: 682 SLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTL-ATIG 740
           + EYLH   S  II+ DLKP N+LLD      ++DFG AK      ++  +T TL  T  
Sbjct: 130 AFEYLH---SKDIIYRDLKPENLLLDNKGHVKVTDFGFAK------KVPDRTFTLCGTPE 180

Query: 741 YMAPE 745
           Y+APE
Sbjct: 181 YLAPE 185

Length = 329

>gnl|CDD|173675 cd05584, STKc_p70S6K, Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase

 Score = 50.2 bits (120), Expect = 2e-06
 Identities = 30/68 (44%), Positives = 38/68 (55%), Gaps = 7/68 (10%)

Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTL-A 737
           IS +LE+LH      II+ DLKP N+LLD      ++DFG+ K    E  +   T T   
Sbjct: 109 ISLALEHLH---QQGIIYRDLKPENILLDAQGHVKLTDFGLCKESIHEGTV---THTFCG 162

Query: 738 TIGYMAPE 745
           TI YMAPE
Sbjct: 163 TIEYMAPE 170

Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the insulin receptor substrate IRS-1, among others. Mammals contain two isoforms of p70S6K, named S6K1 and S6K2 (or S6K-beta). Length = 323

>gnl|CDD|133247 cd05116, PTKc_Syk, Catalytic domain of the Protein Tyrosine Kinase, Spleen tyrosine kinase

 Score = 49.6 bits (118), Expect = 2e-06
 Identities = 37/120 (30%), Positives = 57/120 (47%), Gaps = 13/120 (10%)

Query: 668 KRIRHRN---LVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLS 724
           K +  +N   LV  +S  ++YL   +    +H DL   NVLL     A ISDFG++K L 
Sbjct: 90  KHVTEKNITELVHQVSMGMKYLEETN---FVHRDLAARNVLLVTQHYAKISDFGLSKALG 146

Query: 725 GEDQLSK-QTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIIS------GGKETRSMTVGE 777
            ++   K +T     + + APE     + S++ DV SFG++       G K  + M   E
Sbjct: 147 ADENYYKAKTHGKWPVKWYAPECMNYYKFSSKSDVWSFGVLMWEAFSYGQKPYKGMKGNE 206

Protein Tyrosine Kinase (PTK) family; Spleen tyrosine kinase (Syk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk, together with Zap-70, form the Syk subfamily of kinases which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Syk was first cloned from the spleen, and its function in hematopoietic cells is well-established. Syk is involved in the signaling downstream of activated receptors (including B-cell and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, migration, and phagocytosis. More recently, Syk expression has been detected in other cell types (including epithelial cells, vascular endothelial cells, neurons, hepatocytes, and melanocytes), suggesting a variety of biological functions in non-immune cells. Syk plays a critical role in maintaining vascular integrity and in wound healing during embryogenesis. It also regulates Vav3, which is important in osteoclast function including bone development. In breast epithelial cells, where Syk acts as a negative regulator for epidermal growth factor receptor (EGFR) signaling, loss of Syk expression is associated with abnormal proliferation during cancer development suggesting a potential role as a tumor suppressor. In mice, Syk has been shown to inhibit malignant transformation of mammary epithelial cells induced with murine mammary tumor virus (MMTV). Length = 257

>gnl|CDD|173636 cd05057, PTKc_EGFR_like, Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

 Score = 49.7 bits (119), Expect = 2e-06
 Identities = 38/168 (22%), Positives = 64/168 (38%), Gaps = 41/168 (24%)

Query: 637 GIGNGMEVAVKVFHQQYER-ALKSFEDECEVRKRIRHRNLVKIIS--------------- 680
           G    + VA+KV  ++    A K   DE  V   + H ++V+++                
Sbjct: 32  GEKVKIPVAIKVLREETSPKANKEILDEAYVMASVDHPHVVRLLGICLSSQVQLITQLMP 91

Query: 681 --SSLEY-------------LHFGHSIP----------IIHCDLKPSNVLLDEDMVAHIS 715
               L+Y             L++   I           ++H DL   NVL+       I+
Sbjct: 92  LGCLLDYVRNHKDNIGSQYLLNWCVQIAKGMSYLEEKRLVHRDLAARNVLVKTPQHVKIT 151

Query: 716 DFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGI 763
           DFG+AKLL  +++          I +MA E       + + DV S+G+
Sbjct: 152 DFGLAKLLDVDEKEYHAEGGKVPIKWMALESILHRIYTHKSDVWSYGV 199

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, resulting in the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. Collectively, they can recognize a variety of ligands including EGF, TGFalpha, and neuregulins, among others. All four subfamily members can form homo- or heterodimers. HER3 contains an impaired kinase domain and depends on its heterodimerization partner for activation. EGFR subfamily members are involved in signaling pathways leading to a broad range of cellular responses including cell proliferation, differentiation, migration, growth inhibition, and apoptosis. Gain of function alterations, through their overexpression, deletions, or point mutations in their kinase domains, have been implicated in various cancers. These receptors are targets of many small molecule inhibitors and monoclonal antibodies used in cancer therapy. Length = 279

>gnl|CDD|132971 cd06640, STKc_MST4, Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4

 Score = 49.7 bits (118), Expect = 2e-06
 Identities = 32/91 (35%), Positives = 49/91 (53%), Gaps = 5/91 (5%)

Query: 675 LVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQ 734
           ++K I   L+YLH   S   IH D+K +NVLL E     ++DFG+A  L+  D   K+  
Sbjct: 106 MLKEILKGLDYLH---SEKKIHRDIKAANVLLSEQGDVKLADFGVAGQLT--DTQIKRNT 160

Query: 735 TLATIGYMAPEYGTKGRVSTRGDVCSFGIIS 765
            + T  +MAPE   +    ++ D+ S GI +
Sbjct: 161 FVGTPFWMAPEVIQQSAYDSKADIWSLGITA 191

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by interacting with the Golgi matrix protein GM130 and may play a role in cell migration. Length = 277

>gnl|CDD|173748 cd07853, STKc_NLK, Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase

 Score = 50.1 bits (120), Expect = 2e-06
 Identities = 31/83 (37%), Positives = 44/83 (53%), Gaps = 5/83 (6%)

Query: 683 LEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYM 742
           L+YLH      I+H D+KP N+L++ + V  I DFG+A+ +   D+    TQ + T  Y 
Sbjct: 116 LKYLHSAG---ILHRDIKPGNLLVNSNCVLKICDFGLAR-VEEPDESKHMTQEVVTQYYR 171

Query: 743 APEYGTKGRVSTRG-DVCSFGII 764
           APE     R  T   D+ S G I
Sbjct: 172 APEILMGSRHYTSAVDIWSVGCI 194

Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription factors from the TCF/LEF family, inhibiting their ability to activate the transcription of target genes. In prostate cancer cells, NLK is involved in regulating androgen receptor-mediated transcription and its expression is altered during cancer progression. Length = 372

>gnl|CDD|173641 cd05072, PTKc_Lyn, Catalytic domain of the Protein Tyrosine Kinase, Lyn

 Score = 49.6 bits (118), Expect = 2e-06
 Identities = 24/70 (34%), Positives = 43/70 (61%), Gaps = 1/70 (1%)

Query: 695 IHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVST 754
           IH DL+ +NVL+ E ++  I+DFG+A+++  +++ + +      I + APE    G  + 
Sbjct: 125 IHRDLRAANVLVSESLMCKIADFGLARVIE-DNEYTAREGAKFPIKWTAPEAINFGSFTI 183

Query: 755 RGDVCSFGII 764
           + DV SFGI+
Sbjct: 184 KSDVWSFGIL 193

Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Lyn is expressed in B lymphocytes and myeloid cells. It exhibits both positive and negative regulatory roles in B cell receptor (BCR) signaling. Lyn, as well as Fyn and Blk, promotes B cell activation by phosphorylating ITAMs (immunoreceptor tyr activation motifs) in CD19 and in Ig components of BCR. It negatively regulates signaling by its unique ability to phosphorylate ITIMs (immunoreceptor tyr inhibition motifs) in cell surface receptors like CD22 and CD5. Lyn also plays an important role in G-CSF receptor signaling by phosphorylating a variety of adaptor molecules. Length = 261

>gnl|CDD|173754 cd07865, STKc_CDK9, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9

 Score = 50.1 bits (120), Expect = 2e-06
 Identities = 22/71 (30%), Positives = 42/71 (59%), Gaps = 2/71 (2%)

Query: 677 KIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAK--LLSGEDQLSKQTQ 734
           K++   L  L++ H   I+H D+K +N+L+ +D +  ++DFG+A+   LS   + ++ T 
Sbjct: 123 KVMKMLLNGLYYIHRNKILHRDMKAANILITKDGILKLADFGLARAFSLSKNSKPNRYTN 182

Query: 735 TLATIGYMAPE 745
            + T+ Y  PE
Sbjct: 183 RVVTLWYRPPE 193

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multiple steps of gene expression including transcription elongation, mRNA synthesis, processing, export, and translation. It also plays a role in mediating cytokine induced transcription networks such as IL6-induced STAT3 signaling. In addition, the CDK9/cyclin T2a complex promotes muscle differentiation and enhances the function of some myogenic regulatory factors. Length = 310

>gnl|CDD|173727 cd06613, STKc_MAP4K3_like, Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases

 Score = 49.6 bits (119), Expect = 2e-06
 Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 8/84 (9%)

Query: 683 LEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYM 742
           L YLH       IH D+K +N+LL ED    ++DFG++  L+    ++K+   + T  +M
Sbjct: 114 LAYLH---ETGKIHRDIKGANILLTEDGDVKLADFGVSAQLT--ATIAKRKSFIGTPYWM 168

Query: 743 APEYG---TKGRVSTRGDVCSFGI 763
           APE      KG    + D+ + GI
Sbjct: 169 APEVAAVERKGGYDGKCDIWALGI 192

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAP4K1, also called haematopoietic progenitor kinase 1 (HPK1), is a hematopoietic-specific STK involved in many cellular signaling cascades including MAPK, antigen receptor, apoptosis, growth factor, and cytokine signaling. It participates in the regulation of T cell receptor signaling and T cell-mediated immune responses. MAP4K2 was referred to as germinal center (GC) kinase because of its preferred location in GC B cells. MAP4K3 plays a role in the nutrient-responsive pathway of mTOR (mammalian target of rapamycin) signaling. It is required in the activation of S6 kinase by amino acids and for the phosphorylation of the mTOR-regulated inhibitor of eukaryotic initiation factor 4E. MAP4K5, also called germinal center kinase-related enzyme (GCKR), has been shown to activate the MAPK c-Jun N-terminal kinase (JNK). Length = 262

>gnl|CDD|173648 cd05092, PTKc_TrkA, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A

 Score = 49.6 bits (118), Expect = 2e-06
 Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 3/86 (3%)

Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLAT 738
           I+S + YL    S+  +H DL   N L+ + +V  I DFG+++ +   D      +T+  
Sbjct: 131 IASGMVYLA---SLHFVHRDLATRNCLVGQGLVVKIGDFGMSRDIYSTDYYRVGGRTMLP 187

Query: 739 IGYMAPEYGTKGRVSTRGDVCSFGII 764
           I +M PE     + +T  D+ SFG++
Sbjct: 188 IRWMPPESILYRKFTTESDIWSFGVV 213

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory and sympathetic neurons of the peripheral nervous system, and in basal forebrain cholinergic neurons of the central nervous system. It is critical for neuronal growth, differentiation and survival. Alternative TrkA splicing has been implicated as a pivotal regulator of neuroblastoma (NB) behavior. Normal TrkA expression is associated with better NB prognosis, while the hypoxia-regulated TrkAIII splice variant promotes NB pathogenesis and progression. Aberrant TrkA expression has also been demonstrated in non-neural tumors including prostate, breast, lung, and pancreatic cancers. Length = 280

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 50.0 bits (119), Expect = 3e-06
 Identities = 82/301 (27%), Positives = 139/301 (46%), Gaps = 18/301 (5%)

Query: 171 IPKEIGNLTKLKEIISTITNSTVCEIPREI---GNLPYLARLALATNNLVGVVPVTIFNM 227
           + K   +   L+E++S+ T  T  +         NL  +A   LA N     + +   ++
Sbjct: 7   LLKSALSSNTLREVLSSNTYHTTPQSINLNFPDSNLESVAVNRLALNLSSNTLLLLPSSL 66

Query: 228 SALKEISLLNNSLSGSLP-SRIDLSLPNVETLNLGINSFSGTIPSSITNSSKLSDLELGE 286
           S L  + LL+ S   SL  S   L+L  + +L+L +N     I S +   + L+ L+L  
Sbjct: 67  SRLLSLDLLSPSGISSLDGSENLLNLLPLPSLDLNLNRLRSNI-SELLELTNLTSLDLDN 125

Query: 287 NLFSGFIPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGIL 346
           N  +   P       NL+  +++DN + S        S L N   LK L ++ N L   L
Sbjct: 126 NNITDIPPLIGLLKSNLKELDLSDNKIES------LPSPLRNLPNLKNLDLSFNDLS-DL 178

Query: 347 PKSIGNFSLSLETILMANCSISGNIPQVVGNLSNLLVLELGGNNLTGPIPVTFSQLQTLQ 406
           PK + N   +L  + ++   IS ++P  +  LS L  L+L  N++   +  + S L+ L 
Sbjct: 179 PKLLSN-LSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLS 235

Query: 407 AFDLTRNKLAGPITDELCHLARLHSLVLQGNKFSGSIPSCLGNLTSVRVLYLGLNIFTSV 466
             +L+ NKL       + +L+ L +L L  N+   S  S LG+LT++R L L  N  ++ 
Sbjct: 236 GLELSNNKLEDLPES-IGNLSNLETLDLSNNQ--ISSISSLGSLTNLRELDLSGNSLSNA 292

Query: 467 L 467
           L
Sbjct: 293 L 293

Length = 394

>gnl|CDD|173695 cd05604, STKc_SGK3, Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3

 Score = 50.0 bits (119), Expect = 3e-06
 Identities = 41/106 (38%), Positives = 52/106 (49%), Gaps = 18/106 (16%)

Query: 640 NGMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVKIISSSLEYLHFGHSIPIIHCDL 699
           NG E+    FH Q ER   SF +        R R     I+S+L YLH   SI I++ DL
Sbjct: 79  NGGEL---FFHLQRER---SFPEP-------RARFYAAEIASALGYLH---SINIVYRDL 122

Query: 700 KPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPE 745
           KP N+LLD      ++DFG+ K   G  Q    T    T  Y+APE
Sbjct: 123 KPENILLDSQGHVVLTDFGLCK--EGIAQSDTTTTFCGTPEYLAPE 166

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels, and receptors. It plays a critical role in hair follicle morphogenesis and hair cycling. Length = 325

>gnl|CDD|173640 cd05067, PTKc_Lck_Blk, Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk

 Score = 49.5 bits (118), Expect = 3e-06
 Identities = 24/70 (34%), Positives = 41/70 (58%), Gaps = 1/70 (1%)

Query: 695 IHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVST 754
           IH DL+ +N+L+ E +   I+DFG+A+L+   +  +++      I + APE    G  + 
Sbjct: 124 IHRDLRAANILVSETLCCKIADFGLARLIEDNEYTAREGAKFP-IKWTAPEAINYGTFTI 182

Query: 755 RGDVCSFGII 764
           + DV SFGI+
Sbjct: 183 KSDVWSFGIL 192

Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Lck is expressed in T-cells and natural killer (NK) cells. It plays a critical role in T-cell maturation, activation, and T-cell receptor (TCR) signaling. Lck phosphorylates ITAM (immunoreceptor tyr activation motif) sequences on several subunits of TCRs, leading to the activation of different second messenger cascades. Phosphorylated ITAMs serve as binding sites for other signaling factor such as Syk and ZAP-70, leading to their activation and propagation of downstream events. In addition, Lck regulates drug-induced apoptosis by interfering with the mitochondrial death pathway. The apototic role of Lck is independent of its primary function in T-cell signaling. Blk is expressed specifically in B-cells. It is involved in pre-BCR (B-cell receptor) signaling. Length = 260

>gnl|CDD|143354 cd07849, STKc_ERK1_2_like, Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases

 Score = 50.0 bits (120), Expect = 3e-06
 Identities = 24/57 (42%), Positives = 34/57 (59%), Gaps = 1/57 (1%)

Query: 690 HSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKL-LSGEDQLSKQTQTLATIGYMAPE 745
           HS  ++H DLKPSN+LL+ +    I DFG+A++     D     T+ +AT  Y APE
Sbjct: 123 HSANVLHRDLKPSNLLLNTNCDLKICDFGLARIADPEHDHTGFLTEYVATRWYRAPE 179

Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase kinase from the Raf family. ERK1/2 have numerous substrates, many of which are nuclear and participate in transcriptional regulation of many cellular processes. They regulate cell growth, cell proliferation, and cell cycle progression from G1 to S phase. Although the distinct roles of ERK1 and ERK2 have not been fully determined, it is known that ERK2 can maintain most functions in the absence of ERK1, and that the deletion of ERK2 is embryonically lethal. The MAPK, Fus3, regulates yeast mating processes including mating-specific gene expression, G1 arrest, mating projection, and cell fusion. Length = 336

>gnl|CDD|133204 cd05073, PTKc_Hck, Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase

 Score = 49.3 bits (117), Expect = 3e-06
 Identities = 26/87 (29%), Positives = 45/87 (51%), Gaps = 5/87 (5%)

Query: 695 IHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVST 754
           IH DL+ +N+L+   +V  I+DFG+A+++   +  +++      I + APE    G  + 
Sbjct: 124 IHRDLRAANILVSASLVCKIADFGLARVIEDNEYTAREGAKFP-IKWTAPEAINFGSFTI 182

Query: 755 RGDVCSFGIISGGKETRSMTVGETCTP 781
           + DV SFGI+        +T G    P
Sbjct: 183 KSDVWSFGILL----MEIVTYGRIPYP 205

Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Hck is present in myeloid and lymphoid cells that play a role in the development of cancer. It may be important in the oncogenic signaling of the protein Tel-Abl, which induces a chronic myelogenous leukemia (CML)-like disease. Hck also acts as a negative regulator of granulocyte colony-stimulating factor (G-CSF)-induced proliferation of granulocytic precursors, suggesting a possible role in the development of acute myeloid leukemia (AML). In addition, Hck is essential in regulating the degranulation of polymorphonuclear leukocytes (PMNs). Genetic polymorphisms affect the expression level of Hck, which affects PMN mediator release and influences the development of chronic obstructive pulmonary disease (COPD). Length = 260

>gnl|CDD|173647 cd05091, PTKc_Ror2, Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2

 Score = 49.3 bits (117), Expect = 3e-06
 Identities = 26/91 (28%), Positives = 48/91 (52%), Gaps = 3/91 (3%)

Query: 674 NLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQT 733
           ++V  I++ +E+L   H   ++H DL   NVL+ + +   ISD G+ + +   D      
Sbjct: 128 HIVTQIAAGMEFLSSHH---VVHKDLATRNVLVFDKLNVKISDLGLFREVYAADYYKLMG 184

Query: 734 QTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
            +L  I +M+PE    G+ S   D+ S+G++
Sbjct: 185 NSLLPIRWMSPEAIMYGKFSIDSDIWSYGVV 215

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. Ror2 plays important roles in skeletal and heart formation. Ror2-deficient mice show widespread bone abnormalities, ventricular defects in the heart, and respiratory dysfunction. Mutations in human Ror2 result in two different bone development genetic disorders, recessive Robinow syndrome and brachydactyly type B. Ror2 is also implicated in neural development. Length = 283

>gnl|CDD|132979 cd06648, STKc_PAK_II, Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase

 Score = 49.4 bits (118), Expect = 3e-06
 Identities = 27/96 (28%), Positives = 49/96 (51%), Gaps = 2/96 (2%)

Query: 669 RIRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQ 728
           R+    +  +  + L+ L F H+  +IH D+K  ++LL  D    +SDFG    +S   +
Sbjct: 111 RMNEEQIATVCLAVLKALSFLHAQGVIHRDIKSDSILLTSDGRVKLSDFGFCAQVS--KE 168

Query: 729 LSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
           + ++   + T  +MAPE  ++    T  D+ S GI+
Sbjct: 169 VPRRKSLVGTPYWMAPEVISRLPYGTEVDIWSLGIM 204

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs found in group I PAKs, such as an AID (autoinhibitory domain) and SH3 binding sites. Since group II PAKs do not contain an obvious AID, they may be regulated differently from group I PAKs. While group I PAKs interact with the SH3 containing proteins Nck, Grb2 and PIX, no such binding has been demonstrated for group II PAKs. Some known substrates of group II PAKs are also substrates of group I PAKs such as Raf, BAD, LIMK and GEFH1. Unique group II substrates include MARK/Par-1 and PDZ-RhoGEF. Group II PAKs play important roles in filopodia formation, neuron extension, cytoskeletal organization, and cell survival. Length = 285

>gnl|CDD|143361 cd07856, STKc_Sty1_Hog1, Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1

 Score = 49.4 bits (118), Expect = 4e-06
 Identities = 24/60 (40%), Positives = 37/60 (61%), Gaps = 5/60 (8%)

Query: 686 LHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPE 745
           L + HS  ++H DLKPSN+L++E+    I DFG+A++     Q  + T  ++T  Y APE
Sbjct: 121 LKYVHSAGVVHRDLKPSNILINENCDLKICDFGLARI-----QDPQMTGYVSTRYYRAPE 175

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and UV radiation. Sty1 is regulated by the MAP2K Wis1, which is activated by the MAP3Ks Wis4 and Win1, which receive signals of the stress condition from membrane-spanning histidine kinases Mak1-3. Activated Sty1 stabilizes the Atf1 transcription factor and induces transcription of Atf1-dependent genes of the core environmetal stress response (CESR). Hog1 is the key element in the high osmolarity glycerol (HOG) pathway and is activated upon hyperosmotic stress. Activated Hog1 accumulates in the nucleus and regulates stress-induced transcription. The HOG pathway is mediated by two transmembrane osmosensors, Sln1 and Sho1. Length = 328

>gnl|CDD|173761 cd08221, STKc_Nek9, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9

 Score = 49.0 bits (117), Expect = 4e-06
 Identities = 24/86 (27%), Positives = 46/86 (53%), Gaps = 5/86 (5%)

Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLAT 738
           I S++ Y+H      I+H D+K  N+ L +  +  + DFGI+K+L  E  +++    + T
Sbjct: 110 IVSAVSYIH---KAGILHRDIKTLNIFLTKAGLIKLGDFGISKILGSEYSMAE--TVVGT 164

Query: 739 IGYMAPEYGTKGRVSTRGDVCSFGII 764
             YM+PE     + + + D+ + G +
Sbjct: 165 PYYMSPELCQGVKYNFKSDIWALGCV 190

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associates with FACT (FAcilitates Chromatin Transcription) and modulates interphase progression. It also interacts with Nek6, and Nek7, during mitosis, resulting in their activation. Length = 256

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 49.8 bits (119), Expect = 5e-06
 Identities = 33/106 (31%), Positives = 55/106 (51%), Gaps = 30/106 (28%)

Query: 291 GFIPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGILPKSI 350
           GFIPN I  LR+L+  N+                             +GN + G +P S+
Sbjct: 432 GFIPNDISKLRHLQSINL-----------------------------SGNSIRGNIPPSL 462

Query: 351 GNFSLSLETILMANCSISGNIPQVVGNLSNLLVLELGGNNLTGPIP 396
           G+ + SLE + ++  S +G+IP+ +G L++L +L L GN+L+G +P
Sbjct: 463 GSIT-SLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|143368 cd07863, STKc_CDK4, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4

 Score = 48.8 bits (116), Expect = 5e-06
 Identities = 29/92 (31%), Positives = 49/92 (53%), Gaps = 6/92 (6%)

Query: 673 RNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQ 732
           ++L++     L++LH      I+H DLKP N+L+       ++DFG+A++ S +  L   
Sbjct: 111 KDLMRQFLRGLDFLHANC---IVHRDLKPENILVTSGGQVKLADFGLARIYSCQMAL--- 164

Query: 733 TQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
           T  + T+ Y APE   +   +T  D+ S G I
Sbjct: 165 TPVVVTLWYRAPEVLLQSTYATPVDMWSVGCI 196

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the nucleus. CDK4 also shows kinase activity towards Smad3, a signal transducer of transforming growth factor (TGF)-beta signaling which modulates transcription and plays a role in cell proliferation and apoptosis. CDK4 is inhibited by the p21 inhibitor and is specifically mutated in human melanoma. Length = 288

>gnl|CDD|173719 cd05630, STKc_GRK6, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6

 Score = 48.9 bits (116), Expect = 5e-06
 Identities = 29/67 (43%), Positives = 37/67 (55%), Gaps = 6/67 (8%)

Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLAT 738
           I   LE LH      I++ DLKP N+LLD+     ISD G+A  +  E Q  K    + T
Sbjct: 111 ICCGLEDLHQER---IVYRDLKPENILLDDHGHIRISDLGLAVHVP-EGQTIK--GRVGT 164

Query: 739 IGYMAPE 745
           +GYMAPE
Sbjct: 165 VGYMAPE 171

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as multiple splice variants with different domain architectures. It is post-translationally palmitoylated and localized in the membrane. GRK6 plays important roles in the regulation of dopamine, M3 muscarinic, opioid, and chemokine receptor signaling. It also plays maladaptive roles in addiction and Parkinson's disease. GRK6-deficient mice exhibit altered dopamine receptor regulation, decreased lymphocyte chemotaxis, and increased acute inflammation and neutrophil chemotaxis. Length = 285

>gnl|CDD|133211 cd05080, PTKc_Tyk2_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

 Score = 48.7 bits (116), Expect = 5e-06
 Identities = 30/86 (34%), Positives = 42/86 (48%), Gaps = 4/86 (4%)

Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLL-SGEDQLSKQTQTLA 737
           I   + YLH  H    IH DL   NVLLD D +  I DFG+AK +  G +    +    +
Sbjct: 116 ICEGMAYLHSQH---YIHRDLAARNVLLDNDRLVKIGDFGLAKAVPEGHEYYRVREDGDS 172

Query: 738 TIGYMAPEYGTKGRVSTRGDVCSFGI 763
            + + A E   + + S   DV SFG+
Sbjct: 173 PVFWYAVECLKENKFSYASDVWSFGV 198

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Tyk2 is widely expressed in many tissues. It is involved in signaling via the cytokine receptors IFN-alphabeta, IL-6, IL-10, IL-12, IL-13, and IL-23. It mediates cell surface urokinase receptor (uPAR) signaling and plays a role in modulating vascular smooth muscle cell (VSMC) functional behavior in response to injury. Tyk2 is also important in dendritic cell function and T helper (Th)1 cell differentiation. A homozygous mutation of Tyk2 was found in a patient with hyper-IgE syndrome (HIES), a primary immunodeficiency characterized by recurrent skin abscesses, pneumonia, and elevated serum IgE. This suggests that Tyk2 may play important roles in multiple cytokine signaling involved in innate and adaptive immunity. Length = 283

>gnl|CDD|143363 cd07858, STKc_TEY_MAPK_plant, Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants

 Score = 48.9 bits (117), Expect = 5e-06
 Identities = 33/93 (35%), Positives = 47/93 (50%), Gaps = 14/93 (15%)

Query: 683 LEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYM 742
           L+Y+H   S  ++H DLKPSN+LL+ +    I DFG+A+  S +      T+ + T  Y 
Sbjct: 121 LKYIH---SANVLHRDLKPSNLLLNANCDLKICDFGLARTTSEKGDF--MTEYVVTRWYR 175

Query: 743 APE-------YGTKGRVSTRGDVCSFGIISGGK 768
           APE       Y T   V + G  C F  + G K
Sbjct: 176 APELLLNCSEYTTAIDVWSVG--CIFAELLGRK 206

Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activation loop, TEY and TDY. This subfamily represents the TEY subtype and is further subdivided into three groups (A, B, and C). Group A is represented by AtMPK3, AtMPK6, Nicotiana tabacum BTF4 (NtNTF4), among others. They are mostly involved in environmental and hormonal responses. AtMPK3 and AtMPK6 are also key regulators for stomatal development and patterning. Group B is represented by AtMPK4, AtMPK13, and NtNTF6, among others. They may be involved in both cell division and environmental stress response. AtMPK4 also participates in regulating innate immunity. Group C is represented by AtMPK1, AtMPK2, NtNTF3, Oryza sativa MAPK4 (OsMAPK4), among others. They may also be involved in stress responses. AtMPK1 and AtMPK2 are activated following mechanical injury and in the presence of stress chemicals such as jasmonic acid, hydrogen peroxide and abscisic acid. OsMAPK4 is also called OsMSRMK3 for Multiple Stress-Responsive MAPK3. Length = 337

>gnl|CDD|133246 cd05115, PTKc_Zap-70, Catalytic domain of the Protein Tyrosine Kinase, Zeta-chain-associated protein of 70kDa

 Score = 48.4 bits (115), Expect = 5e-06
 Identities = 40/136 (29%), Positives = 63/136 (46%), Gaps = 13/136 (9%)

Query: 667 RKRIRHRNLVKI---ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLL 723
           +  I   N+V++   +S  ++YL   +    +H DL   NVLL     A ISDFG++K L
Sbjct: 89  KDEITVSNVVELMHQVSMGMKYLEGKN---FVHRDLAARNVLLVNQHYAKISDFGLSKAL 145

Query: 724 SGEDQLSK-QTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIIS------GGKETRSMTVG 776
             +D   K ++     + + APE     + S+R DV S+GI        G K  + M   
Sbjct: 146 GADDSYYKARSAGKWPLKWYAPECINFRKFSSRSDVWSYGITMWEAFSYGQKPYKKMKGP 205

Query: 777 ETCTPVRESKYEVHPA 792
           E  + + + K    PA
Sbjct: 206 EVMSFIEQGKRLDCPA 221

Protein Tyrosine Kinase (PTK) family; Zeta-chain-associated protein of 70kDa (Zap-70); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Zap-70 is a member of the Syk subfamily of kinases, which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Zap-70 binds the phosphorylated ITAM (immunoreceptor tyr activation motif) sequences of the activated TCR zeta-chain through its SH2 domains, leading to its phosphorylation and activation. It then phosphorylates target proteins, which propagate the signals to downstream pathways. Zap-70 is hardly detected in normal peripheral B-cells, but is present in some B-cell malignancies. It is used as a diagnostic marker for chronic lymphocytic leukemia (CLL) as it is associated with the more aggressive subtype of the disease. Length = 257

>gnl|CDD|173629 cd05041, PTKc_Fes_like, Catalytic domain of Fes-like Protein Tyrosine Kinases

 Score = 48.2 bits (115), Expect = 5e-06
 Identities = 50/184 (27%), Positives = 69/184 (37%), Gaps = 55/184 (29%)

Query: 635 LIGIGN-----------GMEVAVKVFHQQYERALK-SFEDECEVRKRIRHRNLVKIIS-- 680
            IG GN             EVAVK         LK  F  E E+ K+  H N+VK+I   
Sbjct: 2   KIGKGNFGDVYKGVLKGNTEVAVKTCRSTLPPDLKRKFLQEAEILKQYDHPNIVKLIGVC 61

Query: 681 ----------------SSLEYLH-----------------------FGHSIPIIHCDLKP 701
                           S L +L                        +  S   IH DL  
Sbjct: 62  VQKQPIYIVMELVPGGSLLTFLRKKKNRLTVKKLLQMSLDAAAGMEYLESKNCIHRDLAA 121

Query: 702 SNVLLDEDMVAHISDFGIAKL-LSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCS 760
            N L+ E+ V  ISDFG+++    G   +S   + +  I + APE    GR ++  DV S
Sbjct: 122 RNCLVGENNVLKISDFGMSREEEGGIYTVSDGLKQIP-IKWTAPEALNYGRYTSESDVWS 180

Query: 761 FGII 764
           +GI+
Sbjct: 181 YGIL 184

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes and Fer kinases play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Fes and Fer show redundancy in their biological functions. Length = 251

>gnl|CDD|173740 cd07842, STKc_CDK8_like, Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases

 Score = 48.8 bits (117), Expect = 5e-06
 Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 18/86 (20%)

Query: 672 HRNLVK-IISSSLEYLHFGHSIPIIHCDLKPSNVLL----DEDMVAHISDFGIA------ 720
             ++VK ++   L  +H+ HS  ++H DLKP+N+L+     E  V  I D G+A      
Sbjct: 106 PPSMVKSLLWQILNGVHYLHSNWVLHRDLKPANILVMGEGPERGVVKIGDLGLARLFNAP 165

Query: 721 -KLLSGEDQLSKQTQTLATIGYMAPE 745
            K L+  D +      + TI Y APE
Sbjct: 166 LKPLADLDPV------VVTIWYRAPE 185

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA polymerase II (RNAP II)-dependent transcription. CDC2L6 also associates with Mediator in complexes lacking CDK8. In VP16-dependent transcriptional activation, CDK8 and CDC2L6 exerts opposing effects by positive and negative regulation, respectively, in similar conditions. Length = 316

>gnl|CDD|132990 cd06659, STKc_PAK6, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6

 Score = 48.9 bits (116), Expect = 6e-06
 Identities = 29/96 (30%), Positives = 49/96 (51%), Gaps = 2/96 (2%)

Query: 669 RIRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQ 728
           R+    +  +  S L+ L + HS  +IH D+K  ++LL  D    +SDFG    +S +  
Sbjct: 113 RLNEEQIATVCESVLQALCYLHSQGVIHRDIKSDSILLTLDGRVKLSDFGFCAQISKD-- 170

Query: 729 LSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
           + K+   + T  +MAPE  ++    T  D+ S GI+
Sbjct: 171 VPKRKSLVGTPYWMAPEVISRTPYGTEVDIWSLGIM 206

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role in stress responses through its activation by the mitogen-activated protein kinase (MAPK) p38 and MAPK kinase 6 (MKK6) pathway. PAK6 is highly expressed in the brain. It is not required for viability, but together with PAK5, it is required for normal levels of locomotion and activity, and for learning and memory. Increased expression of PAK6 is found in primary and metastatic prostate cancer. PAK6 may play a role in the regulation of motility. Length = 297

>gnl|CDD|143383 cd07878, STKc_p38beta_MAPK11, Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase

 Score = 48.9 bits (116), Expect = 6e-06
 Identities = 30/68 (44%), Positives = 40/68 (58%), Gaps = 5/68 (7%)

Query: 678 IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLA 737
           +I   L  L + HS  IIH DLKPSNV ++ED    I DFG+A+    +D++   T  +A
Sbjct: 123 LIYQLLRGLKYIHSAGIIHRDLKPSNVAVNEDCELRILDFGLAR--QADDEM---TGYVA 177

Query: 738 TIGYMAPE 745
           T  Y APE
Sbjct: 178 TRWYRAPE 185

Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is widely expressed in tissues and shows more similarity with p38alpha than with the other isoforms. Both are sensitive to pyridinylimidazoles and share some common substrates such as MAPK activated protein kinase 2 (MK2) and the transcription factors ATF2, c-Fos and, ELK-1. p38beta is involved in regulating the activation of the cyclooxygenase-2 promoter and the expression of TGFbeta-induced alpha-smooth muscle cell actin. Length = 343

>gnl|CDD|132972 cd06641, STKc_MST3, Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3

 Score = 48.5 bits (115), Expect = 6e-06
 Identities = 30/91 (32%), Positives = 48/91 (52%), Gaps = 2/91 (2%)

Query: 675 LVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQ 734
           +  I+   L+ L + HS   IH D+K +NVLL E     ++DFG+A  L+  D   K+  
Sbjct: 103 IATILREILKGLDYLHSEKKIHRDIKAANVLLSEHGEVKLADFGVAGQLT--DTQIKRNT 160

Query: 735 TLATIGYMAPEYGTKGRVSTRGDVCSFGIIS 765
            + T  +MAPE   +    ++ D+ S GI +
Sbjct: 161 FVGTPFWMAPEVIKQSAYDSKADIWSLGITA 191

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and intrauterine growth retardation. Length = 277

>gnl|CDD|173697 cd05606, STKc_beta_ARK, Catalytic domain of the Protein Serine/Threonine Kinase, beta-adrenergic receptor kinase

 Score = 48.4 bits (115), Expect = 7e-06
 Identities = 28/68 (41%), Positives = 40/68 (58%), Gaps = 7/68 (10%)

Query: 683 LEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYM 742
           LE++H   +  +++ DLKP+N+LLDE     ISD G+A   S +    K   ++ T GYM
Sbjct: 110 LEHMH---NRFVVYRDLKPANILLDEHGHVRISDLGLACDFSKK----KPHASVGTHGYM 162

Query: 743 APEYGTKG 750
           APE   KG
Sbjct: 163 APEVLQKG 170

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, beta-adrenergic receptor kinase (beta-ARK) group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. The beta-ARK group is composed of GRK2, GRK3, and similar proteins. GRK2 and GRK3 are both widely expressed in many tissues, although GRK2 is present at higher levels. They contain an N-terminal RGS homology (RH) domain, a central catalytic domain, and C-terminal pleckstrin homology (PH) domain that mediates PIP2 and G protein betagamma-subunit translocation to the membrane. GRK2 (also called beta-ARK or beta-ARK1) is important in regulating several cardiac receptor responses. It plays a role in cardiac development and in hypertension. Deletion of GRK2 in mice results in embryonic lethality, caused by hypoplasia of the ventricular myocardium. GRK2 also plays important roles in the liver (as a regulator of portal blood pressure), in immune cells, and in the nervous system. Altered GRK2 expression has been reported in several disorders including major depression, schizophrenia, bipolar disorder, and Parkinsonism. Length = 278

>gnl|CDD|132986 cd06655, STKc_PAK2, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2

 Score = 48.2 bits (114), Expect = 7e-06
 Identities = 29/91 (31%), Positives = 48/91 (52%), Gaps = 2/91 (2%)

Query: 675 LVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQ 734
           +  +    L+ L F H+  +IH D+K  NVLL  D    ++DFG    ++ E   SK++ 
Sbjct: 117 IAAVCRECLQALEFLHANQVIHRDIKSDNVLLGMDGSVKLTDFGFCAQITPEQ--SKRST 174

Query: 735 TLATIGYMAPEYGTKGRVSTRGDVCSFGIIS 765
            + T  +MAPE  T+     + D+ S GI++
Sbjct: 175 MVGTPYWMAPEVVTRKAYGPKVDIWSLGIMA 205

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). PAK2 plays a role in pro-apoptotic signaling. It is cleaved and activated by caspases leading to morphological changes during apoptosis. PAK2 is also activated in response to a variety of stresses including DNA damage, hyperosmolarity, serum starvation, and contact inhibition, and may play a role in coordinating the stress response. PAK2 also contributes to cancer cell invasion through a mechanism distinct from that of PAK1. Length = 296

>gnl|CDD|173751 cd07860, STKc_CDK2_3, Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3

 Score = 48.3 bits (115), Expect = 8e-06
 Identities = 32/91 (35%), Positives = 47/91 (51%), Gaps = 5/91 (5%)

Query: 683 LEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYM 742
           L+ L F HS  ++H DLKP N+L++ +    ++DFG+A+       +   T  + T+ Y 
Sbjct: 110 LQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVP--VRTYTHEVVTLWYR 167

Query: 743 APE--YGTKGRVSTRGDVCSFGIISGGKETR 771
           APE   G K   ST  D+ S G I     TR
Sbjct: 168 APEILLGCK-YYSTAVDIWSLGCIFAEMVTR 197

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex plays a role in regulating DNA replication. CDK2, together with CDK4, also regulates embryonic cell proliferation. Despite these important roles, mice deleted for the cdk2 gene are viable and normal except for being sterile. This may be due to compensation provided by CDK1 (also called Cdc2), which can also bind cyclin E and drive the G1 to S phase transition. CDK3 is regulated by cyclin C and it phosphorylates pRB specifically during the G0/G1 transition. This phosphorylation is required for cells to exit G0 efficiently and enter the G1 phase. Length = 284

>gnl|CDD|132963 cd06632, STKc_MEKK1_plant, Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

 Score = 47.8 bits (114), Expect = 8e-06
 Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 12/76 (15%)

Query: 673 RNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQ 732
           R   + I   LEYLH  +    +H D+K +N+L+D + V  ++DFG+AK      Q+ + 
Sbjct: 105 RLYTRQILLGLEYLHDRN---TVHRDIKGANILVDTNGVVKLADFGMAK------QVVEF 155

Query: 733 TQTLATIG---YMAPE 745
           +   +  G   +MAPE
Sbjct: 156 SFAKSFKGSPYWMAPE 171

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidopsis thaliana MEKK1 activates MPK4, a MAPK that regulates systemic acquired resistance. MEKK1 also participates in the regulation of temperature-sensitive and tissue-specific cell death. Length = 258

>gnl|CDD|173772 cd08530, STKc_CNK2-like, Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

 Score = 47.8 bits (114), Expect = 9e-06
 Identities = 28/75 (37%), Positives = 40/75 (53%), Gaps = 4/75 (5%)

Query: 690 HSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTK 749
           H   I+H DLK +N+LL  + +  I D GI+K+L     ++K TQ   T  YMAPE    
Sbjct: 120 HEQKILHRDLKSANILLVANDLVKIGDLGISKVLKK--NMAK-TQI-GTPHYMAPEVWKG 175

Query: 750 GRVSTRGDVCSFGII 764
              S + D+ S G +
Sbjct: 176 RPYSYKSDIWSLGCL 190

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, and it regulates cell size, through influencing the size threshold at which cells commit to mitosis. Length = 256

>gnl|CDD|143359 cd07854, STKc_MAPK4_6, Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6

 Score = 48.2 bits (115), Expect = 9e-06
 Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 2/65 (3%)

Query: 683 LEYLHFGHSIPIIHCDLKPSNVLLD-EDMVAHISDFGIAKLLSGEDQLSKQ-TQTLATIG 740
           L  L + HS  ++H DLKP+NV ++ ED+V  I DFG+A+++          ++ L T  
Sbjct: 124 LRGLKYIHSANVLHRDLKPANVFINTEDLVLKIGDFGLARIVDPHYSHKGYLSEGLVTKW 183

Query: 741 YMAPE 745
           Y +P 
Sbjct: 184 YRSPR 188

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progression in certain conditions. It may also play a role in glucose-induced insulin secretion. MAPK6 and MAPK4 cooperate to regulate the activity of MAPK-activated protein kinase 5 (MK5), leading to its relocation to the cytoplasm and exclusion from the nucleus. The MAPK6/MK5 and MAPK4/MK5 pathways may play critical roles in embryonic and post-natal development. Length = 342

>gnl|CDD|173656 cd05111, PTK_HER3, Pseudokinase domain of the Protein Tyrosine Kinase, HER3

 Score = 47.6 bits (113), Expect = 1e-05
 Identities = 24/70 (34%), Positives = 40/70 (57%)

Query: 694 IIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVS 753
           ++H +L   N+LL  D +  I+DFG+A LL  +D+    ++    I +MA E    GR +
Sbjct: 130 MVHRNLAARNILLKSDSIVQIADFGVADLLYPDDKKYFYSEHKTPIKWMALESILFGRYT 189

Query: 754 TRGDVCSFGI 763
            + DV S+G+
Sbjct: 190 HQSDVWSYGV 199

Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. HER3 binds the neuregulin ligands, NRG1 and NRG2. HER3 contains an impaired tyr kinase domain and relies on its heterodimerization partners for activity following ligand binding. The HER2-HER3 heterodimer constitutes a high affinity co-receptor capable of potent mitogenic signaling. HER3 participates in a signaling pathway involved in the proliferation, survival, adhesion, and motility of tumor cells. Length = 279

>gnl|CDD|143346 cd07841, STKc_CDK7, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

 Score = 48.0 bits (115), Expect = 1e-05
 Identities = 33/84 (39%), Positives = 45/84 (53%), Gaps = 8/84 (9%)

Query: 683 LEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYM 742
           LEYLH   S  I+H DLKP+N+L+  D V  ++DFG+A+  S      K T  + T  Y 
Sbjct: 115 LEYLH---SNWILHRDLKPNNLLIASDGVLKLADFGLAR--SFGSPNRKMTHQVVTRWYR 169

Query: 743 APE--YGTKGRVSTRGDVCSFGII 764
           APE  +G +       D+ S G I
Sbjct: 170 APELLFGAR-HYGVGVDMWSVGCI 192

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is also a component of the general transcription factor TFIIH, which phosphorylates the C-terminal domain (CTD) of RNA polymerase II when it is bound with unphosphorylated DNA, as present in the pre-initiation complex. Following phosphorylation, the CTD dissociates from the DNA which allows transcription initiation. Length = 298

>gnl|CDD|173674 cd05583, STKc_MSK_N, N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase

 Score = 47.9 bits (114), Expect = 1e-05
 Identities = 33/106 (31%), Positives = 53/106 (50%), Gaps = 17/106 (16%)

Query: 640 NGMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVKIISSSLEYLHFGHSIPIIHCDL 699
           NG E+   ++ +++      F  E EVR  I        I  +L++LH    + II+ D+
Sbjct: 88  NGGELFTHLYQREH------F-TESEVRVYIAE------IVLALDHLH---QLGIIYRDI 131

Query: 700 KPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPE 745
           K  N+LLD +    ++DFG++K    E +  +      TI YMAPE
Sbjct: 132 KLENILLDSEGHVVLTDFGLSKEFLAE-EEERAYSFCGTIEYMAPE 176

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines. This triggers phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydrophobic motif (HM) in the C-terminal extension of NTD, which facilitates the phosphorylation of the A-loop and activates the NTD, which in turn phosphorylates downstream targets. MSKs are predominantly nuclear proteins. They are widely expressed in many tissues including heart, brain, lung, liver, kidney, and pancreas. There are two isoforms of MSK, called MSK1 and MSK2. Length = 288

>gnl|CDD|132975 cd06644, STKc_STK10_LOK, Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase

 Score = 47.7 bits (113), Expect = 1e-05
 Identities = 26/68 (38%), Positives = 36/68 (52%), Gaps = 2/68 (2%)

Query: 678 IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLA 737
           I    LE L + HS+ IIH DLK  NVLL  D    ++DFG++        L ++   + 
Sbjct: 115 ICRQMLEALQYLHSMKIIHRDLKAGNVLLTLDGDIKLADFGVSA--KNVKTLQRRDSFIG 172

Query: 738 TIGYMAPE 745
           T  +MAPE
Sbjct: 173 TPYWMAPE 180

Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types. Length = 292

>gnl|CDD|173721 cd05632, STKc_GRK5, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5

 Score = 47.7 bits (113), Expect = 1e-05
 Identities = 28/68 (41%), Positives = 38/68 (55%), Gaps = 8/68 (11%)

Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIA-KLLSGEDQLSKQTQTLA 737
           I   LE LH  +    ++ DLKP N+LLD+     ISD G+A K+  GE    +    + 
Sbjct: 111 ILCGLEDLHREN---TVYRDLKPENILLDDYGHIRISDLGLAVKIPEGESIRGR----VG 163

Query: 738 TIGYMAPE 745
           T+GYMAPE
Sbjct: 164 TVGYMAPE 171

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with the membrane though an N-terminal PIP2 binding domain and also binds phospholipids via its C-terminus. GRK5 deficiency is associated with early Alzheimer's disease in humans and mouse models. GRK5 also plays a crucial role in the pathogenesis of sporadic Parkinson's disease. It participates in the regulation and desensitization of PDGFRbeta, a receptor tyrosine kinase involved in a variety of downstream cellular effects including cell growth, chemotaxis, apoptosis, and angiogenesis. GRK5 also regulates Toll-like receptor 4, which is involved in innate and adaptive immunity. Length = 285

>gnl|CDD|133181 cd05050, PTKc_Musk, Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase

 Score = 47.9 bits (114), Expect = 1e-05
 Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 3/86 (3%)

Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLAT 738
           +++ + YL        +H DL   N L+ E+MV  I+DFG+++ +   D           
Sbjct: 139 VAAGMAYLSERK---FVHRDLATRNCLVGENMVVKIADFGLSRNIYSADYYKASENDAIP 195

Query: 739 IGYMAPEYGTKGRVSTRGDVCSFGII 764
           I +M PE     R +T  DV ++G++
Sbjct: 196 IRWMPPESIFYNRYTTESDVWAYGVV 221

Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates Musk autophosphorylation and activation, leading to the clustering of acetylcholine receptors (AChRs). To date, there is no evidence to suggest that agrin binds directly to Musk. Mutations in AChR, Musk and other partners are responsible for diseases of the NMJ, such as the autoimmune syndrome myasthenia gravis. Length = 288

>gnl|CDD|173722 cd05633, STKc_GRK3, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 3

 Score = 47.7 bits (113), Expect = 1e-05
 Identities = 26/61 (42%), Positives = 36/61 (59%), Gaps = 4/61 (6%)

Query: 690 HSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTK 749
           H+  +++ DLKP+N+LLDE     ISD G+A   S +    K   ++ T GYMAPE   K
Sbjct: 114 HNRFVVYRDLKPANILLDEHGHVRISDLGLACDFSKK----KPHASVGTHGYMAPEVLQK 169

Query: 750 G 750
           G
Sbjct: 170 G 170

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK3 (also known as beta-adrenergic receptor kinase 2) is widely expressed in many tissues. GRK3-deficient mice show a lack of olfactory receptor desensitization and altered regulation of the M2 muscarinic airway. GRK3 is involved in modulating the cholinergic response of airway smooth muscles. It also plays a role in dopamine receptor regulation. GRK3 promoter polymorphisms may be associated with bipolar disorder. Length = 279

>gnl|CDD|133168 cd05036, PTKc_ALK_LTK, Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase

 Score = 47.4 bits (113), Expect = 1e-05
 Identities = 34/118 (28%), Positives = 54/118 (45%), Gaps = 13/118 (11%)

Query: 657 LKSFEDECEVRK----RIRHRNLVKI---ISSSLEYLHFGHSIPIIHCDLKPSNVLLD-- 707
           LKSF  E   R      +  ++L+     ++   +YL   H    IH D+   N LL   
Sbjct: 96  LKSFLRENRPRPERPSSLTMKDLLFCARDVAKGCKYLEENH---FIHRDIAARNCLLTCK 152

Query: 708 -EDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
               VA I+DFG+A+ +       K  + +  I +M PE    G  +++ DV SFG++
Sbjct: 153 GPGRVAKIADFGMARDIYRASYYRKGGRAMLPIKWMPPEAFLDGIFTSKTDVWSFGVL 210

Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well as visceral muscle differentiation in Drosophila. ALK is aberrantly expressed as fusion proteins, due to chromosomal translocations, in about 60% of anaplastic large cell lymphomas (ALCLs). ALK fusion proteins are also found in rare cases of diffuse large B cell lymphomas (DLBCLs). LTK is mainly expressed in B lymphocytes and neuronal tissues. It is important in cell proliferation and survival. Transgenic mice expressing TLK display retarded growth and high mortality rate. In addition, a polymorphism in mouse and human LTK is implicated in the pathogenesis of systemic lupus erythematosus. Length = 277

>gnl|CDD|173650 cd05094, PTKc_TrkC, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C

 Score = 47.7 bits (113), Expect = 1e-05
 Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 3/86 (3%)

Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLAT 738
           I+S + YL   H    +H DL   N L+  +++  I DFG+++ +   D       T+  
Sbjct: 132 IASGMVYLASQH---FVHRDLATRNCLVGANLLVKIGDFGMSRDVYSTDYYRVGGHTMLP 188

Query: 739 IGYMAPEYGTKGRVSTRGDVCSFGII 764
           I +M PE     + +T  DV SFG+I
Sbjct: 189 IRWMPPESIMYRKFTTESDVWSFGVI 214

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some non-neural tissues including the developing heart. NT3/TrkC signaling plays an important role in the innervation of the cardiac conducting system and the development of smooth muscle cells. Mice deficient with NT3 and TrkC have multiple heart defects. NT3/TrkC signaling is also critical for the development and maintenance of enteric neurons that are important for the control of gut peristalsis. Length = 291

>gnl|CDD|173696 cd05605, STKc_GRK4_like, Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases

 Score = 47.5 bits (113), Expect = 1e-05
 Identities = 26/67 (38%), Positives = 38/67 (56%), Gaps = 6/67 (8%)

Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLAT 738
           I+  LE LH      I++ DLKP N+LLD+     ISD G+A  +   + +  +   + T
Sbjct: 111 ITCGLEDLH---RERIVYRDLKPENILLDDYGHIRISDLGLAVEIPEGETIRGR---VGT 164

Query: 739 IGYMAPE 745
           +GYMAPE
Sbjct: 165 VGYMAPE 171

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5, GRK6, and similar GRKs. GRKs in this group contain an N-terminal RGS homology (RH) domain and a catalytic domain, but lack a G protein betagamma-subunit binding domain. They are localized to the plasma membrane through post-translational lipid modification or direct binding to PIP2. Length = 285

>gnl|CDD|143382 cd07877, STKc_p38alpha_MAPK14, Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase

 Score = 47.7 bits (113), Expect = 2e-05
 Identities = 29/68 (42%), Positives = 37/68 (54%), Gaps = 5/68 (7%)

Query: 678 IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLA 737
           +I   L  L + HS  IIH DLKPSN+ ++ED    I DFG+A+    E      T  +A
Sbjct: 125 LIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDE-----MTGYVA 179

Query: 738 TIGYMAPE 745
           T  Y APE
Sbjct: 180 TRWYRAPE 187

Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14, is expressed in most tissues and is the major isoform involved in the immune and inflammatory response. It is the central p38 MAPK involved in myogenesis. It plays a role in regulating cell cycle check-point transition and promoting cell differentiation. p38alpha also regulates cell proliferation and death through crosstalk with the JNK pathway. Its substrates include MAPK activated protein kinase 2 (MK2), MK5, and the transcription factors ATF2 and Mitf. Length = 345

>gnl|CDD|133192 cd05061, PTKc_InsR, Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor

 Score = 47.3 bits (112), Expect = 2e-05
 Identities = 36/159 (22%), Positives = 71/159 (44%), Gaps = 8/159 (5%)

Query: 609 INSPQAIRRFSYHELLRATDRFSENNLIGIGNGMEVAVKVFHQQYERALKSFEDECEVRK 668
           +N    ++ F+ H ++R     S+     +   ME+      + Y R+L+   +    R 
Sbjct: 57  LNEASVMKGFTCHHVVRLLGVVSKGQPTLVV--MELMAHGDLKSYLRSLRPEAENNPGRP 114

Query: 669 RIRHRNLVKI---ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSG 725
               + ++++   I+  + YL+   +   +H DL   N ++  D    I DFG+ + +  
Sbjct: 115 PPTLQEMIQMAAEIADGMAYLN---AKKFVHRDLAARNCMVAHDFTVKIGDFGMTRDIYE 171

Query: 726 EDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
            D   K  + L  + +MAPE    G  +T  D+ SFG++
Sbjct: 172 TDYYRKGGKGLLPVRWMAPESLKDGVFTTSSDMWSFGVV 210

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein metabolism, ion and amino acid transport, cell cycle and proliferation, cell differentiation, gene transcription, and nitric oxide synthesis. Insulin resistance, caused by abnormalities in InsR signaling, has been described in diabetes, hypertension, cardiovascular disease, metabolic syndrome, heart failure, and female infertility. Length = 288

>gnl|CDD|133228 cd05097, PTKc_DDR_like, Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases

 Score = 47.3 bits (112), Expect = 2e-05
 Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 3/85 (3%)

Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLAT 738
           I+S ++YL    S+  +H DL   N L+       I+DFG+++ L   D    Q + +  
Sbjct: 138 IASGMKYLA---SLNFVHRDLATRNCLVGNHYTIKIADFGMSRNLYSGDYYRIQGRAVLP 194

Query: 739 IGYMAPEYGTKGRVSTRGDVCSFGI 763
           I +MA E    G+ +T  DV +FG+
Sbjct: 195 IRWMAWESILLGKFTTASDVWAFGV 219

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including breast, colon, ovarian, brain, and lung. There is no evidence showing that DDRs act as transforming oncogenes. They are more likely to play a role in the regulation of tumor growth and metastasis. Length = 295

>gnl|CDD|173741 cd07843, STKc_CDC2L1, Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1

 Score = 47.2 bits (113), Expect = 2e-05
 Identities = 32/86 (37%), Positives = 42/86 (48%), Gaps = 5/86 (5%)

Query: 683 LEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYM 742
           L  +   H   I+H DLK SN+LL+   +  I DFG+A+       L   TQ + T+ Y 
Sbjct: 116 LSGVAHLHDNWILHRDLKTSNLLLNNRGILKICDFGLAREYG--SPLKPYTQLVVTLWYR 173

Query: 743 APE--YGTKGRVSTRGDVCSFGIISG 766
           APE   G K   ST  D+ S G I  
Sbjct: 174 APELLLGAK-EYSTAIDMWSVGCIFA 198

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the major isoform, associates with cyclin L and is expressed throughout the cell cycle. It is involved in RNA processing and the regulation of transcription. CDK11(p58) associates with cyclin D3 and is expressed during the G2/M phase of the cell cycle. It plays roles in spindle morphogenesis, centrosome maturation, sister chromatid cohesion, and the completion of mitosis. CDK11(p46) is formed from the larger isoforms by caspases during TNFalpha- and Fas-induced apoptosis. It functions as a downstream effector kinase in apoptotic signaling pathways and interacts with eukaryotic initiation factor 3f (eIF3f), p21-activated kinase (PAK1), and Ran-binding protein (RanBPM). Length = 293

>gnl|CDD|132973 cd06642, STKc_STK25-YSK1, Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1

 Score = 47.0 bits (111), Expect = 2e-05
 Identities = 30/91 (32%), Positives = 47/91 (51%), Gaps = 2/91 (2%)

Query: 675 LVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQ 734
           +  I+   L+ L + HS   IH D+K +NVLL E     ++DFG+A  L+  D   K+  
Sbjct: 103 IATILREILKGLDYLHSERKIHRDIKAANVLLSEQGDVKLADFGVAGQLT--DTQIKRNT 160

Query: 735 TLATIGYMAPEYGTKGRVSTRGDVCSFGIIS 765
            + T  +MAPE   +     + D+ S GI +
Sbjct: 161 FVGTPFWMAPEVIKQSAYDFKADIWSLGITA 191

Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25 is a candidate gene responsible for pseudopseudohypoparathyroidism (PPHP), a disease that shares features with the Albright hereditary osteodystrophy (AHO) phenotype. Length = 277

>gnl|CDD|133219 cd05088, PTKc_Tie2, Catalytic domain of the Protein Tyrosine Kinase, Tie2

 Score = 46.9 bits (111), Expect = 2e-05
 Identities = 44/148 (29%), Positives = 64/148 (43%), Gaps = 28/148 (18%)

Query: 681 SSLEYLHFGHSIP----------IIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLS 730
           SS + LHF   +            IH DL   N+L+ E+ VA I+DFG+++   G++   
Sbjct: 122 SSQQLLHFAADVARGMDYLSQKQFIHRDLAARNILVGENYVAKIADFGLSR---GQEVYV 178

Query: 731 KQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII------SGGKETRSMTVGETCTPVRE 784
           K+T     + +MA E       +T  DV S+G++       GG     MT  E       
Sbjct: 179 KKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTCAEL------ 232

Query: 785 SKYEVHPATTTIMEHPLPRVGEVMDVDR 812
             YE  P     +E PL    EV D+ R
Sbjct: 233 --YEKLPQGYR-LEKPLNCDDEVYDLMR 257

Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of Ang-1 to Tie2 leads to receptor autophosphorylation and activation, promoting cell migration and survival. In contrast, Ang-2 binding to Tie2 does not result in the same response, suggesting that Ang-2 may function as an antagonist. Tie2 signaling plays key regulatory roles in vascular integrity and quiescence, and in inflammation. Length = 303

>gnl|CDD|132942 cd06611, STKc_SLK_like, Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases

 Score = 46.7 bits (111), Expect = 2e-05
 Identities = 31/92 (33%), Positives = 42/92 (45%), Gaps = 19/92 (20%)

Query: 683 LEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYM 742
           LE L+F HS  +IH DLK  N+LL  D    ++DFG++       Q  K+   + T  +M
Sbjct: 113 LEALNFLHSHKVIHRDLKAGNILLTLDGDVKLADFGVSAKNKSTLQ--KRDTFIGTPYWM 170

Query: 743 APE-----------YGTKGRVSTRGDVCSFGI 763
           APE           Y  K       D+ S GI
Sbjct: 171 APEVVACETFKDNPYDYK------ADIWSLGI 196

Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. SmSLK is capable of activating the MAPK Jun N-terminal kinase (JNK) pathway in human embryonic kidney (HEK) cells as well as in Xenopus oocytes. It may participate in regulating MAPK cascades during host-parasite interactions. Length = 280

>gnl|CDD|132989 cd06658, STKc_PAK5, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5

 Score = 46.6 bits (110), Expect = 2e-05
 Identities = 29/96 (30%), Positives = 48/96 (50%), Gaps = 2/96 (2%)

Query: 669 RIRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQ 728
           R+    +  +  S L  L + H+  +IH D+K  ++LL  D    +SDFG    +S E  
Sbjct: 114 RMNEEQIATVCLSVLRALSYLHNQGVIHRDIKSDSILLTSDGRIKLSDFGFCAQVSKE-- 171

Query: 729 LSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
           + K+   + T  +MAPE  ++    T  D+ S GI+
Sbjct: 172 VPKRKSLVGTPYWMAPEVISRLPYGTEVDIWSLGIM 207

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly expressed in the brain. It is not required for viability, but together with PAK6, it is required for normal levels of locomotion and activity, and for learning and memory. PAK5 cooperates with Inca (induced in neural crest by AP2) in the regulation of cell adhesion and cytoskeletal organization in the embryo and in neural crest cells during craniofacial development. PAK5 may also play a role in controlling the signaling of Raf-1, an effector of Ras, at the mitochondria. Length = 292

>gnl|CDD|143367 cd07862, STKc_CDK6, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6

 Score = 46.5 bits (110), Expect = 2e-05
 Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 3/82 (3%)

Query: 683 LEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYM 742
           L  L F HS  ++H DLKP N+L+       ++DFG+A++ S +  L   T  + T+ Y 
Sbjct: 120 LRGLDFLHSHRVVHRDLKPQNILVTSSGQIKLADFGLARIYSFQMAL---TSVVVTLWYR 176

Query: 743 APEYGTKGRVSTRGDVCSFGII 764
           APE   +   +T  D+ S G I
Sbjct: 177 APEVLLQSSYATPVDLWSVGCI 198

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytoplasm. It is also present in the ruffling edge of spreading fibroblasts and may play a role in cell spreading. It binds to the p21 inhibitor without any effect on its own activity and it is overexpressed in squamous cell carcinomas and neuroblastomas. CDK6 has also been shown to inhibit cell differentiation in many cell types. Length = 290

>gnl|CDD|132946 cd06615, PKc_MEK, Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase

 Score = 46.7 bits (111), Expect = 3e-05
 Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 6/81 (7%)

Query: 683 LEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYM 742
           L YL   H I  +H D+KPSN+L++      + DFG+    SG+   S     + T  YM
Sbjct: 112 LTYLREKHKI--MHRDVKPSNILVNSRGEIKLCDFGV----SGQLIDSMANSFVGTRSYM 165

Query: 743 APEYGTKGRVSTRGDVCSFGI 763
           +PE       + + D+ S G+
Sbjct: 166 SPERLQGTHYTVQSDIWSLGL 186

Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the downstream targets, ERK(extracellular signal-regulated kinase) 1 and ERK2, on specific threonine and tyrosine residues. The ERK cascade starts with extracellular signals including growth factors, hormones, and neurotransmitters, which act through receptors and ion channels to initiate intracellular signaling that leads to the activation at the MAPKKK (Raf-1 or MOS) level, which leads to the transmission of signals to MEK1/2, and finally to ERK1/2. The ERK cascade plays an important role in cell proliferation, differentiation, oncogenic transformation, and cell cycle control, as well as in apoptosis and cell survival under certain conditions. This cascade has also been implicated in synaptic plasticity, migration, morphological determination, and stress response immunological reactions. Gain-of-function mutations in genes encoding ERK cascade proteins, including MEK1/2, cause cardiofaciocutaneous (CFC) syndrome, a condition leading to multiple congenital anomalies and mental retardation in patients. Length = 308

>gnl|CDD|173683 cd05592, STKc_nPKC_theta_delta, Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta

 Score = 46.7 bits (111), Expect = 3e-05
 Identities = 33/81 (40%), Positives = 44/81 (54%), Gaps = 6/81 (7%)

Query: 686 LHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKL-LSGEDQLSKQTQTLATIGYMAP 744
           L F H   II+ DLK  NVLLD+D    I+DFG+ K  ++GE    K +    T  Y+AP
Sbjct: 109 LQFLHKKGIIYRDLKLDNVLLDKDGHIKIADFGMCKENMNGE---GKASTFCGTPDYIAP 165

Query: 745 EYGTKGRVSTRG-DVCSFGII 764
           E   KG+      D  SFG++
Sbjct: 166 EI-LKGQKYNESVDWWSFGVL 185

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in several aspects of T-cell biology. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. Length = 316

>gnl|CDD|132965 cd06634, STKc_TAO2, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2

 Score = 46.6 bits (110), Expect = 3e-05
 Identities = 34/116 (29%), Positives = 56/116 (48%), Gaps = 10/116 (8%)

Query: 654 ERALKSFEDECEVRKR-IRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVA 712
           E  L S  D  EV K+ ++   +  +   +L+ L + HS  +IH D+K  N+LL E  + 
Sbjct: 95  EYCLGSASDLLEVHKKPLQEVEIAAVTHGALQGLAYLHSHNMIHRDVKAGNILLSEPGLV 154

Query: 713 HISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEY---GTKGRVSTRGDVCSFGIIS 765
            + DFG A +++  +        + T  +MAPE      +G+   + DV S GI  
Sbjct: 155 KLGDFGSASIMAPANXF------VGTPYWMAPEVILAMDEGQYDGKVDVWSLGITC 204

Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. TAO2 contains a long C-terminal extension with autoinhibitory segments. It is activated by the release of this inhibition and the phosphorylation of its activation loop serine. TAO2 functions as a regulator of actin cytoskeletal and microtubule organization. In addition, it regulates the transforming growth factor-activated kinase 1 (TAK1), which is a MAPKKK that plays an essential role in the signaling pathways of tumor necrosis factor (TNF), interleukin 1 (IL-1), and Toll-like receptor (TLR). Length = 308

>gnl|CDD|173738 cd07835, STKc_CDK1_like, Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases

 Score = 46.5 bits (111), Expect = 3e-05
 Identities = 33/111 (29%), Positives = 56/111 (50%), Gaps = 8/111 (7%)

Query: 657 LKSFEDECEVRKRIRHRNLVK-IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHIS 715
           LK + D   +        L+K  +   L+ + + HS  ++H DLKP N+L+D +    ++
Sbjct: 84  LKKYMDSSPLTGL--DPPLIKSYLYQLLQGIAYCHSHRVLHRDLKPQNLLIDREGALKLA 141

Query: 716 DFGIAKLLSGEDQLSKQTQTLATIGYMAPE--YGTKGRVSTRGDVCSFGII 764
           DFG+A+       +   T  + T+ Y APE   G++ + ST  D+ S G I
Sbjct: 142 DFGLARAFG--VPVRTYTHEVVTLWYRAPEILLGSR-QYSTPVDIWSIGCI 189

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2 phase entry and progression while the CDK1/cyclin B complex is critical for G2 to M phase transition. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex plays a role in regulating DNA replication. Studies in knockout mice revealed that CDK1 can compensate for the loss of the cdk2 gene as it can also bind cyclin E and drive G1 to S phase transition. CDK3 is regulated by cyclin C and it phosphorylates pRB specifically during the G0/G1 transition. This phosphorylation is required for cells to exit G0 efficiently and enter the G1 phase. Length = 283

>gnl|CDD|173657 cd05113, PTKc_Btk_Bmx, Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

 Score = 46.0 bits (109), Expect = 3e-05
 Identities = 25/100 (25%), Positives = 50/100 (50%), Gaps = 1/100 (1%)

Query: 665 EVRKRIRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLS 724
           E  KR +   L+++     E + +  S   IH DL   N L+D+     +SDFG+++ + 
Sbjct: 92  EHGKRFQPSQLLEMCKDVCEGMAYLESKQFIHRDLAARNCLVDDQGCVKVSDFGLSRYVL 151

Query: 725 GEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
            +D+ +    +   + +  PE     + S++ DV +FG++
Sbjct: 152 -DDEYTSSVGSKFPVRWSPPEVLLYSKFSSKSDVWAFGVL 190

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, Btk contains the Tec homology (TH) domain with proline-rich and zinc-binding regions. Tec kinases are expressed mainly by haematopoietic cells. Btk is expressed in B-cells, and a variety of myeloid cells including mast cells, platelets, neutrophils, and dendrictic cells. It interacts with a variety of partners, from cytosolic proteins to nuclear transcription factors, suggesting a diversity of functions. Stimulation of a diverse array of cell surface receptors, including antigen engagement of the B-cell receptor (BCR), leads to PH-mediated membrane translocation of Btk and subsequent phosphorylation by Src kinase and activation. Btk plays an important role in the life cycle of B-cells including their development, differentiation, proliferation, survival, and apoptosis. Mutations in Btk cause the primary immunodeficiency disease, X-linked agammaglobulinaemia (XLA) in humans. Bmx is primarily expressed in bone marrow and the arterial endothelium, and plays an important role in ischemia-induced angiogenesis. It facilitates arterial growth, capillary formation, vessel maturation, and bone marrow-derived endothelial progenitor cell mobilization. Length = 256

>gnl|CDD|173743 cd07846, STKc_CDKL2_3, Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3

 Score = 46.2 bits (110), Expect = 3e-05
 Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 2/69 (2%)

Query: 677 KIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTL 736
           K +   L  + F HS  IIH D+KP N+L+ +  V  + DFG A+ L+   ++   T  +
Sbjct: 104 KYLFQILRGIEFCHSHNIIHRDIKPENILVSQSGVVKLCDFGFARTLAAPGEVY--TDYV 161

Query: 737 ATIGYMAPE 745
           AT  Y APE
Sbjct: 162 ATRWYRAPE 170

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKIAMRE (NKIATRE in rat), by translocation is associated with mild mental retardation. It has been reported that CDKL3 is lost in leukemic cells having a chromosome arm 5q deletion, and may contribute to the transformed phenotype. Length = 286

>gnl|CDD|132966 cd06635, STKc_TAO1, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1

 Score = 46.2 bits (109), Expect = 3e-05
 Identities = 36/114 (31%), Positives = 55/114 (48%), Gaps = 10/114 (8%)

Query: 654 ERALKSFEDECEVRKR-IRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVA 712
           E  L S  D  EV K+ ++   +  I   +L+ L + HS  +IH D+K  N+LL E    
Sbjct: 105 EYCLGSASDLLEVHKKPLQEVEIAAITHGALQGLAYLHSHNMIHRDIKAGNILLTEPGQV 164

Query: 713 HISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEY---GTKGRVSTRGDVCSFGI 763
            ++DFG A + S  +        + T  +MAPE      +G+   + DV S GI
Sbjct: 165 KLADFGSASIASPANSF------VGTPYWMAPEVILAMDEGQYDGKVDVWSLGI 212

Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuronal apoptosis. TAO1 interacts with the checkpoint proteins BubR1 and Mad2, and plays an important role in regulating mitotic progression, which is required for both chromosome congression and checkpoint-induced anaphase delay. TAO1 may play a role in protecting genomic stability. Length = 317

>gnl|CDD|132940 cd06609, STKc_MST3_like, Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

 Score = 46.1 bits (110), Expect = 3e-05
 Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 5/81 (6%)

Query: 683 LEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYM 742
           LEYLH       IH D+K +N+LL E+    ++DFG++  L+    +SK+   + T  +M
Sbjct: 111 LEYLH---EEGKIHRDIKAANILLSEEGDVKLADFGVSGQLT--STMSKRNTFVGTPFWM 165

Query: 743 APEYGTKGRVSTRGDVCSFGI 763
           APE   +     + D+ S GI
Sbjct: 166 APEVIKQSGYDEKADIWSLGI 186

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN) signaling pathway, and plays a role in cytokinesis. SPS1 plays a role in regulating proteins required for spore wall formation. MST4 plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. STK25 may play a role in the regulation of cell migration and polarization. Length = 274

>gnl|CDD|173746 cd07850, STKc_JNK, Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase

 Score = 46.6 bits (111), Expect = 4e-05
 Identities = 49/151 (32%), Positives = 68/151 (45%), Gaps = 36/151 (23%)

Query: 634 NLIGIGNGMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVKIISSSLE-----YL-- 686
           N+IG+ N       VF  Q  ++L+ F+D   V + +   NL ++I   L+     YL  
Sbjct: 76  NIIGLLN-------VFTPQ--KSLEEFQDVYLVMELMDA-NLCQVIQMDLDHERMSYLLY 125

Query: 687 -------HFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATI 739
                  H  HS  IIH DLKPSN+++  D    I DFG+A+       +   T  + T 
Sbjct: 126 QMLCGIKHL-HSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMM---TPYVVTR 181

Query: 740 GYMAPE----YGTKGRVSTRGDVCSFGIISG 766
            Y APE     G K  V    D+ S G I G
Sbjct: 182 YYRAPEVILGMGYKENV----DIWSVGCIMG 208

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3) that are alternatively spliced to produce at least 10 isoforms. JNKs are specifically activated by the MAPK kinases MKK4 and MKK7, which are in turn activated by upstream MAPK kinase kinases as a result of different stimuli including stresses such as ultraviolet (UV) irradiation, hyperosmolarity, heat shock, or cytokines. JNKs activate a large number of different substrates based on specific stimulus, cell type, and cellular condition, and may be implicated in seemingly contradictory functions. Length = 353

>gnl|CDD|133205 cd05074, PTKc_Tyro3, Catalytic domain of the Protein Tyrosine Kinase, Tyro3

 Score = 46.1 bits (109), Expect = 4e-05
 Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 3/96 (3%)

Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLAT 738
           I+S +EYL    S   IH DL   N +L+E+M   ++DFG++K +   D   +   +   
Sbjct: 122 IASGMEYLS---SKNFIHRDLAARNCMLNENMTVCVADFGLSKKIYSGDYYRQGCASKLP 178

Query: 739 IGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMT 774
           + ++A E       +T  DV +FG+      TR  T
Sbjct: 179 VKWLALESLADNVYTTHSDVWAFGVTMWEIMTRGQT 214

Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic factor. It is also expressed in osteoclasts and has a role in bone resorption. Length = 273

>gnl|CDD|133227 cd05096, PTKc_DDR1, Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1

 Score = 45.7 bits (108), Expect = 5e-05
 Identities = 28/85 (32%), Positives = 47/85 (55%), Gaps = 3/85 (3%)

Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLAT 738
           I+S ++YL    S+  +H DL   N L+ E++   I+DFG+++ L   D    Q + +  
Sbjct: 147 IASGMKYLS---SLNFVHRDLATRNCLVGENLTIKIADFGMSRNLYAGDYYRIQGRAVLP 203

Query: 739 IGYMAPEYGTKGRVSTRGDVCSFGI 763
           I +MA E    G+ +T  DV +FG+
Sbjct: 204 IRWMAWECILMGKFTTASDVWAFGV 228

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in keratinocytes, colonic mucosa epithelium, lung epithelium, thyroid follicles, and the islets of Langerhans. During embryonic development, it is found in the developing neuroectoderm. DDR1 is a key regulator of cell morphogenesis, differentiation and proliferation. It is important in the development of the mammary gland, the vasculator and the kidney. DDR1 is also found in human leukocytes, where it facilitates cell adhesion, migration, maturation, and cytokine production. Length = 304

>gnl|CDD|143342 cd07837, STKc_CdkB_plant, Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase

 Score = 45.6 bits (108), Expect = 5e-05
 Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 4/77 (5%)

Query: 690 HSIPIIHCDLKPSNVLLDED-MVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGT 748
           H   ++H DLKP N+L+D+   +  I+D G+ +  S    +   T  + T+ Y APE   
Sbjct: 127 HKHGVMHRDLKPQNLLVDKQKGLLKIADLGLGRAFS--IPVKSYTHEIVTLWYRAPEVLL 184

Query: 749 KGR-VSTRGDVCSFGII 764
                ST  D+ S G I
Sbjct: 185 GSTHYSTPVDIWSVGCI 201

Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developmental pathways, such as stomata and leaf development. CdkB has been shown to associate with both cyclin B, which controls G2/M transition, and cyclin D, which acts as a mediator in linking extracellular signals to the cell cycle. Length = 295

>gnl|CDD|173762 cd08222, STKc_Nek11, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 11

 Score = 45.3 bits (107), Expect = 5e-05
 Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 3/79 (3%)

Query: 686 LHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPE 745
           +H+ H   I+H DLK  N+ L  +++  I DFG+++LL G   L+  T    T  YM+PE
Sbjct: 119 VHYMHQRRILHRDLKAKNIFLKNNLL-KIGDFGVSRLLMGSCDLA--TTFTGTPYYMSPE 175

Query: 746 YGTKGRVSTRGDVCSFGII 764
                   ++ D+ S G I
Sbjct: 176 ALKHQGYDSKSDIWSLGCI 194

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 11 (Nek11) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek11 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek11 is involved, through direct phosphorylation, in regulating the degradation of Cdc25A (Cell Division Cycle 25 homolog A), which plays a role in cell cycle progression and in activating cyclin dependent kinases. Nek11 is activated by CHK1 (CHeckpoint Kinase 1) and may be involved in the G2/M checkpoint. Nek11 may also play a role in the S-phase checkpoint as well as in DNA replication and genotoxic stress responses. Length = 260

>gnl|CDD|140293 PTZ00267, PTZ00267, NIMA-related protein kinase; Provisional

 Score = 46.2 bits (109), Expect = 6e-05
 Identities = 25/75 (33%), Positives = 38/75 (50%)

Query: 690 HSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTK 749
           HS  ++H DLK +N+ L    +  + DFG +K  S    L   +    T  Y+APE   +
Sbjct: 186 HSRKMMHRDLKSANIFLMPTGIIKLGDFGFSKQYSDSVSLDVASSFCGTPYYLAPELWER 245

Query: 750 GRVSTRGDVCSFGII 764
            R S + D+ S G+I
Sbjct: 246 KRYSKKADMWSLGVI 260

Length = 478

>gnl|CDD|133233 cd05102, PTKc_VEGFR3, Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3

 Score = 45.4 bits (107), Expect = 7e-05
 Identities = 26/79 (32%), Positives = 41/79 (51%)

Query: 686 LHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPE 745
           + F  S   IH DL   N+LL E+ V  I DFG+A+ +  +    ++      + +MAPE
Sbjct: 187 MEFLASRKCIHRDLAARNILLSENNVVKICDFGLARDIYKDPDYVRKGSARLPLKWMAPE 246

Query: 746 YGTKGRVSTRGDVCSFGII 764
                  +T+ DV SFG++
Sbjct: 247 SIFDKVYTTQSDVWSFGVL 265

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. VEGFR3 preferentially binds the ligands VEGFC and VEGFD. VEGFR3 is essential for lymphatic endothelial cell (EC) development and function. It has been shown to regulate adaptive immunity during corneal transplantation. VEGFR3 is upregulated on blood vascular ECs in pathological conditions such as vascular tumors and the periphery of solid tumors. It plays a role in cancer progression and lymph node metastasis. Missense mutations in the VEGFR3 gene are associated with primary human lymphedema. Length = 338

>gnl|CDD|132964 cd06633, STKc_TAO3, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3

 Score = 45.4 bits (107), Expect = 7e-05
 Identities = 36/114 (31%), Positives = 54/114 (47%), Gaps = 10/114 (8%)

Query: 654 ERALKSFEDECEVRKR-IRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVA 712
           E  L S  D  EV K+ ++   +  I   +L+ L + HS  +IH D+K  N+LL E    
Sbjct: 101 EYCLGSASDLLEVHKKPLQEVEIAAITHGALQGLAYLHSHNMIHRDIKAGNILLTEPGQV 160

Query: 713 HISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEY---GTKGRVSTRGDVCSFGI 763
            ++DFG A   S  +        + T  +MAPE      +G+   + DV S GI
Sbjct: 161 KLADFGSASKSSPANSF------VGTPYWMAPEVILAMDEGQYDGKVDVWSLGI 208

Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a component of the RAM (regulation of Ace2p activity and cellular morphogenesis) signaling pathway. TAO3 is upregulated in retinal ganglion cells after axotomy, and may play a role in apoptosis. Length = 313

>gnl|CDD|173649 cd05093, PTKc_TrkB, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B

 Score = 45.1 bits (106), Expect = 8e-05
 Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 3/91 (3%)

Query: 674 NLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQT 733
           ++ + I++ + YL   H    +H DL   N L+ E+++  I DFG+++ +   D      
Sbjct: 124 HIAQQIAAGMVYLASQH---FVHRDLATRNCLVGENLLVKIGDFGMSRDVYSTDYYRVGG 180

Query: 734 QTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
            T+  I +M PE     + +T  DV S G++
Sbjct: 181 HTMLPIRWMPPESIMYRKFTTESDVWSLGVV 211

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly expressed in the nervous system and in some non-neural tissues. It plays important roles in cell proliferation, differentiation, and survival. BDNF/Trk signaling plays a key role in regulating activity-dependent synaptic plasticity. TrkB also contributes to protection against gp120-induced neuronal cell death. TrkB overexpression is associated with poor prognosis in neuroblastoma (NB) and other human cancers. It acts as a suppressor of anoikis (detachment-induced apoptosis) and contributes to tumor metastasis. Length = 288

>gnl|CDD|173745 cd07848, STKc_CDKL5, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5

 Score = 45.0 bits (106), Expect = 8e-05
 Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 1/84 (1%)

Query: 683 LEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYM 742
           ++ +H+ H   I+H D+KP N+L+  + V  + DFG A+ LS E   +  T+ +AT  Y 
Sbjct: 110 IKAIHWCHKNDIVHRDIKPENLLISHNDVLKLCDFGFARNLS-EGSNANYTEYVATRWYR 168

Query: 743 APEYGTKGRVSTRGDVCSFGIISG 766
           +PE           D+ S G I G
Sbjct: 169 SPELLLGAPYGKAVDMWSVGCILG 192

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 5 (CDKL5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Mutations in the gene encoding CDKL5, previously called STK9, are associated with early onset epilepsy and severe mental retardation [X-linked infantile spasm syndrome (ISSX) or West syndrome]. In addition, CDKL5 mutations also sometimes cause a phenotype similar to Rett syndrome (RTT), a progressive neurodevelopmental disorder. These pathogenic mutations are located in the N-terminal portion of the protein within the kinase domain. Length = 287

>gnl|CDD|173638 cd05065, PTKc_EphR_B, Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors

 Score = 44.9 bits (106), Expect = 8e-05
 Identities = 28/91 (30%), Positives = 50/91 (54%), Gaps = 10/91 (10%)

Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLA- 737
           I++ ++YL     +  +H DL   N+L++ ++V  +SDFG+++ L  ED  S  T T + 
Sbjct: 115 IAAGMKYLS---EMNYVHRDLAARNILVNSNLVCKVSDFGLSRFL--EDDTSDPTYTSSL 169

Query: 738 ----TIGYMAPEYGTKGRVSTRGDVCSFGII 764
                I + APE     + ++  DV S+GI+
Sbjct: 170 GGKIPIRWTAPEAIAYRKFTSASDVWSYGIV 200

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion. EphBRs play important roles in synapse formation and plasticity, spine morphogenesis, axon guidance, and angiogenesis. In the intestinal epithelium, EphBRs are Wnt signaling target genes that control cell compartmentalization. They function as suppressors of color cancer progression. Length = 269

>gnl|CDD|143381 cd07876, STKc_JNK2, Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2

 Score = 45.4 bits (107), Expect = 8e-05
 Identities = 41/134 (30%), Positives = 60/134 (44%), Gaps = 19/134 (14%)

Query: 646 VKVFHQQYERALKSFEDECEVRKRIRHRNLVKIISSSLE-----YLHFG--------HSI 692
           + VF  Q  ++L+ F+D   V + +   NL ++I   L+     YL +         HS 
Sbjct: 86  LNVFTPQ--KSLEEFQDVYLVME-LMDANLCQVIHMELDHERMSYLLYQMLCGIKHLHSA 142

Query: 693 PIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRV 752
            IIH DLKPSN+++  D    I DFG+A+       +   T  + T  Y APE       
Sbjct: 143 GIIHRDLKPSNIVVKSDCTLKILDFGLARTACTNFMM---TPYVVTRYYRAPEVILGMGY 199

Query: 753 STRGDVCSFGIISG 766
               D+ S G I G
Sbjct: 200 KENVDIWSVGCIMG 213

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jnk1 or Jnk2) could survive but disruption of both genes resulted in lethality. However, recent studies have shown that JNK1 and JNK2 perform distinct functions through specific binding partners and substrates. JNK2 is specifically translocated to the mitochondria during dopaminergic cell death. Specific substrates include the microtubule-associated proteins DCX and Tau, as well as TIF-IA which is involved in ribosomal RNA synthesis regulation. Mice deficient in Jnk2 show protection against arthritis, type 1 diabetes, atherosclerosis, abdominal aortic aneurysm, cardiac cell death, TNF-induced liver damage, and tumor growth, indicating that JNK2 may play roles in the pathogenesis of these diseases. Length = 359

>gnl|CDD|133167 cd05035, PTKc_Axl_like, Catalytic Domain of Axl-like Protein Tyrosine Kinases

 Score = 44.8 bits (106), Expect = 8e-05
 Identities = 27/96 (28%), Positives = 45/96 (46%), Gaps = 3/96 (3%)

Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLAT 738
           I+  +EYL    +   IH DL   N +L EDM   ++DFG++K +   D   +       
Sbjct: 122 IALGMEYLS---NRNFIHRDLAARNCMLREDMTVCVADFGLSKKIYSGDYYRQGRIAKMP 178

Query: 739 IGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMT 774
           + ++A E       +++ DV +FG+      TR  T
Sbjct: 179 VKWIAIESLADRVYTSKSDVWAFGVTMWEIATRGQT 214

Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellular effects including survival, proliferation, migration, and phagocytosis. They are also associated with several types of cancer as well as inflammatory, autoimmune, vascular, and kidney diseases. Mer is named after its original reported expression pattern (monocytes, epithelial, and reproductive tissues). It is required for the ingestion of apoptotic cells by phagocytes such as macrophages, retinal pigment epithelial cells, and dendritic cells. Mer is also important in maintaining immune homeostasis. Length = 273

>gnl|CDD|173694 cd05603, STKc_SGK2, Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2

 Score = 45.3 bits (107), Expect = 8e-05
 Identities = 35/106 (33%), Positives = 49/106 (46%), Gaps = 18/106 (16%)

Query: 640 NGMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVKIISSSLEYLHFGHSIPIIHCDL 699
           NG E+    FH Q ER               R R     ++S++ YLH   S+ II+ DL
Sbjct: 79  NGGEL---FFHLQRERCFL----------EPRARFYAAEVASAIGYLH---SLNIIYRDL 122

Query: 700 KPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPE 745
           KP N+LLD      ++DFG+ K   G +     +    T  Y+APE
Sbjct: 123 KPENILLDSQGHVVLTDFGLCK--EGVEPEETTSTFCGTPEYLAPE 166

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1. Length = 321

>gnl|CDD|165211 PHA02882, PHA02882, putative serine/threonine kinase; Provisional

 Score = 44.9 bits (106), Expect = 8e-05
 Identities = 36/113 (31%), Positives = 60/113 (53%), Gaps = 8/113 (7%)

Query: 658 KSFEDECEVRKRIRHRN--LVKIISSSLEY-LHFGHSIPIIHCDLKPSNVLLDEDMVAHI 714
           K  E+  E+ KRI+ +N  L+K I   +   L + H   I H D+KP N+++D +   +I
Sbjct: 108 KLVENTKEIFKRIKCKNKKLIKNIMKDMLTTLEYIHEHGISHGDIKPENIMVDGNNRGYI 167

Query: 715 SDFGIAK--LLSGED-QLSKQTQTL--ATIGYMAPEYGTKGRVSTRGDVCSFG 762
            D+GIA   ++ G+  + SK+ + L   T+ Y   +      V+ RGD+ S G
Sbjct: 168 IDYGIASHFIIHGKHIEYSKEQKDLHRGTLYYAGLDAHNGACVTRRGDLESLG 220

Length = 294

>gnl|CDD|132950 cd06619, PKc_MKK5, Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5

 Score = 44.9 bits (106), Expect = 9e-05
 Identities = 30/99 (30%), Positives = 50/99 (50%), Gaps = 4/99 (4%)

Query: 665 EVRKRIRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLS 724
           +V ++I    L +I  + ++ L +  S+ I+H D+KPSN+L++      + DFG++  L 
Sbjct: 87  DVYRKIPEHVLGRIAVAVVKGLTYLWSLKILHRDVKPSNMLVNTRGQVKLCDFGVSTQLV 146

Query: 725 GEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGI 763
                S     + T  YMAPE  +  +     DV S GI
Sbjct: 147 N----SIAKTYVGTNAYMAPERISGEQYGIHSDVWSLGI 181

Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that phosphorylates its downstream target, extracellular signal-regulated kinase 5 (ERK5), on specific threonine and tyrosine residues. MKK5 is activated by MEKK2 and MEKK3 in response to mitogenic and stress stimuli. The ERK5 cascade promotes cell proliferation, differentiation, neuronal survival, and neuroprotection. This cascade plays an essential role in heart development. Mice deficient in either ERK5 or MKK5 die around embryonic day 10 due to cardiovascular defects including underdevelopment of the myocardium. In addition, MKK5 is associated with metastasis and unfavorable prognosis in prostate cancer. Length = 279

>gnl|CDD|173635 cd05054, PTKc_VEGFR, Catalytic domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors

 Score = 45.2 bits (107), Expect = 9e-05
 Identities = 30/93 (32%), Positives = 47/93 (50%), Gaps = 3/93 (3%)

Query: 675 LVKIISSSLEY---LHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSK 731
           L  +IS S +    + F  S   IH DL   N+LL E+ V  I DFG+A+ +  +    +
Sbjct: 172 LEDLISYSFQVARGMEFLASRKCIHRDLAARNILLSENNVVKICDFGLARDIYKDPDYVR 231

Query: 732 QTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
           +      + +MAPE       +T+ DV SFG++
Sbjct: 232 KGDARLPLKWMAPESIFDKVYTTQSDVWSFGVL 264

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. There are five VEGF ligands in mammals, which bind, in an overlapping pattern to the three VEGFRs, which can form homo or heterodimers. VEGFRs regulate the cardiovascular system. They are critical for vascular development during embryogenesis and blood vessel formation in adults. They induce cellular functions common to other growth factor receptors such as cell migration, survival, and proliferation. VEGFR1 binds VEGFA, VEGFB, and placenta growth factor (PLGF). It regulates monocyte and macrophage migration, vascular permeability, haematopoiesis, and the recruitment of haematopietic progenitor cells from the bone marrow. Length = 337

>gnl|CDD|133216 cd05085, PTKc_Fer, Catalytic domain of the Protein Tyrosine Kinase, Fer

 Score = 44.2 bits (104), Expect = 1e-04
 Identities = 32/100 (32%), Positives = 49/100 (49%), Gaps = 5/100 (5%)

Query: 667 RKRIRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGE 726
           +  ++ + LVK    +   + +  S   IH DL   N L+ E+ V  ISDFG+++    E
Sbjct: 87  KDELKTKQLVKFALDAAAGMAYLESKNCIHRDLAARNCLVGENNVLKISDFGMSR---QE 143

Query: 727 DQLSKQTQTLAT--IGYMAPEYGTKGRVSTRGDVCSFGII 764
           D     +  L    I + APE    GR S+  DV S+GI+
Sbjct: 144 DDGIYSSSGLKQIPIKWTAPEALNYGRYSSESDVWSYGIL 183

Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-cell interactions mediated by adherens junctions and focal adhesions. Fer kinase also regulates cell cycle progression in malignant cells. Length = 250

>gnl|CDD|173752 cd07861, STKc_CDK1_euk, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like

 Score = 44.3 bits (105), Expect = 1e-04
 Identities = 31/84 (36%), Positives = 47/84 (55%), Gaps = 5/84 (5%)

Query: 683 LEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYM 742
           L+ + F HS  ++H DLKP N+L+D   V  ++DFG+A+      ++   T  + T+ Y 
Sbjct: 111 LQGILFCHSRRVLHRDLKPQNLLIDNKGVIKLADFGLARAFGIPVRV--YTHEVVTLWYR 168

Query: 743 APE--YGTKGRVSTRGDVCSFGII 764
           APE   G+  R ST  D+ S G I
Sbjct: 169 APEVLLGSP-RYSTPVDIWSIGTI 191

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2 phase entry and progression. CDK1/cyclin A2 has also been implicated as an important regulator of S phase events. The CDK1/cyclin B complex is critical for G2 to M phase transition. It induces mitosis by activating nuclear enzymes that regulate chromatin condensation, nuclear membrane degradation, mitosis-specific microtubule and cytoskeletal reorganization. CDK1 also associates with cyclin E and plays a role in the entry into S phase. CDK1 transcription is stable throughout the cell cycle but is modulated in some pathological conditions. It may play a role in regulating apoptosis under these conditions. In breast cancer cells, HER2 can mediate apoptosis by inactivating CDK1. Activation of CDK1 may contribute to HIV-1 induced apoptosis and neuronal apoptosis in neurodegenerative diseases. Length = 285

>gnl|CDD|173651 cd05095, PTKc_DDR2, Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2

 Score = 44.5 bits (105), Expect = 1e-04
 Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 13/115 (11%)

Query: 673 RNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQ 732
             +   I+S ++YL    S+  +H DL   N L+ ++    I+DFG+++ L   D    Q
Sbjct: 133 IFMATQIASGMKYLS---SLNFVHRDLATRNCLVGKNYTIKIADFGMSRNLYSGDYYRIQ 189

Query: 733 TQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGETCTPVRESKY 787
            + +  I +M+ E    G+ +T  DV +FG+          T+ E  T  +E  Y
Sbjct: 190 GRAVLPIRWMSWESILLGKFTTASDVWAFGV----------TLWEILTLCKEQPY 234

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues with the highest levels found in skeletal muscle, skin, kidney and lung. It is important in cell proliferation and development. Mice, with a deletion of DDR2, suffer from dwarfism and delayed healing of epidermal wounds. DDR2 also contributes to collagen (type I) regulation by inhibiting fibrillogenesis and altering the morphology of collagen fibers. It is also expressed in immature dendritic cells (DCs), where it plays a role in DC activation and function. Length = 296

>gnl|CDD|173642 cd05075, PTKc_Axl, Catalytic domain of the Protein Tyrosine Kinase, Axl

 Score = 44.3 bits (104), Expect = 1e-04
 Identities = 33/103 (32%), Positives = 50/103 (48%), Gaps = 6/103 (5%)

Query: 675 LVKI---ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSK 731
           LVK    I+S +EYL    S   IH DL   N +L+E+M   ++DFG++K +   D   +
Sbjct: 114 LVKFMTDIASGMEYLS---SKSFIHRDLAARNCMLNENMNVCVADFGLSKKIYNGDYYRQ 170

Query: 732 QTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMT 774
                  + ++A E       +T+ DV SFG+      TR  T
Sbjct: 171 GRIAKMPVKWIAIESLADRVYTTKSDVWSFGVTMWEIATRGQT 213

Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transformed cells. Axl signaling is important in many cellular functions such as survival, anti-apoptosis, proliferation, migration, and adhesion. Axl was originally isolated from patients with chronic myelogenous leukemia and a chronic myeloproliferative disorder. Axl is overexpressed in many human cancers including colon, squamous cell, thyroid, breast, and lung carcinomas. Length = 272

>gnl|CDD|173653 cd05105, PTKc_PDGFR_alpha, Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha

 Score = 44.6 bits (105), Expect = 1e-04
 Identities = 25/79 (31%), Positives = 39/79 (49%)

Query: 686 LHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPE 745
           + F  S   +H DL   NVLL +  +  I DFG+A+ +  +     +  T   + +MAPE
Sbjct: 250 MEFLASKNCVHRDLAARNVLLAQGKIVKICDFGLARDIMHDSNYVSKGSTFLPVKWMAPE 309

Query: 746 YGTKGRVSTRGDVCSFGII 764
                  +T  DV S+GI+
Sbjct: 310 SIFDNLYTTLSDVWSYGIL 328

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF-AB, and PDGF-CC induce PDGFR alpha homodimerization. PDGFR signaling plays many roles in normal embryonic development and adult physiology. PDGFR alpha signaling is important in the formation of lung alveoli, intestinal villi, mesenchymal dermis, and hair follicles, as well as in the development of oligodendrocytes, retinal astrocytes, neural crest cells, and testicular cells. Aberrant PDGFR alpha expression is associated with some human cancers. Mutations in PDGFR alpha have been found within a subset of gastrointestinal stromal tumors (GISTs). An active fusion protein FIP1L1-PDGFR alpha, derived from interstitial deletion, is associated with idiopathic hypereosinophilic syndrome (HES) and chronic eosinophilic leukemia (CEL). Length = 400

>gnl|CDD|133234 cd05103, PTKc_VEGFR2, Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2

 Score = 44.6 bits (105), Expect = 1e-04
 Identities = 25/79 (31%), Positives = 40/79 (50%)

Query: 686 LHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPE 745
           + F  S   IH DL   N+LL E+ V  I DFG+A+ +  +    ++      + +MAPE
Sbjct: 192 MEFLASRKCIHRDLAARNILLSENNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPE 251

Query: 746 YGTKGRVSTRGDVCSFGII 764
                  + + DV SFG++
Sbjct: 252 TIFDRVYTIQSDVWSFGVL 270

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The carboxyl terminus of VEGFR2 plays an important role in its autophosphorylation and activation. VEGFR2 binds the ligands VEGFA, VEGFC, VEGFD and VEGFE. VEGFR2 signaling is implicated in all aspects of normal and pathological vascular endothelial cell biology. It induces a variety of cellular effects including migration, survival, and proliferation. It is critical in regulating embryonic vascular development and angiogenesis. VEGFR2 is the major signal transducer in pathological angiogenesis including cancer and diabetic retinopathy, and is a target for inhibition in cancer therapy. Length = 343

>gnl|CDD|133186 cd05055, PTKc_PDGFR, Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors

 Score = 44.4 bits (105), Expect = 1e-04
 Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 2/71 (2%)

Query: 695 IHCDLKPSNVLLDEDMVAHISDFGIAK-LLSGEDQLSKQTQTLATIGYMAPEYGTKGRVS 753
           IH DL   NVLL    +  I DFG+A+ +++  + + K    L  + +MAPE       +
Sbjct: 163 IHRDLAARNVLLTHGKIVKICDFGLARDIMNDSNYVVKGNARLP-VKWMAPESIFNCVYT 221

Query: 754 TRGDVCSFGII 764
              DV S+GI+
Sbjct: 222 FESDVWSYGIL 232

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR subfamily receptors are important in the development of a variety of cells. PDGFRs are expressed in a many cells including fibroblasts, neurons, endometrial cells, mammary epithelial cells, and vascular smooth muscle cells. PDGFR signaling is critical in normal embryonic development, angiogenesis, and wound healing. PDGFRs transduce mitogenic signals for connective tissue cells and are important for cell shape and motility. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem cells, the interstitial cells of Cajal, and the pacemaker cells of the GI tract. CSF-1R signaling is critical in the regulation of macrophages and osteoclasts. Mammalian FLT3 plays an important role in the survival, proliferation, and differentiation of stem cells. Length = 302

>gnl|CDD|133165 cd05033, PTKc_EphR, Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

 Score = 44.3 bits (105), Expect = 1e-04
 Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 8/74 (10%)

Query: 695 IHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLA----TIGYMAPEYGTKG 750
           +H DL   N+L++ ++V  +SDFG    LS   + S+ T T       I + APE     
Sbjct: 128 VHRDLAARNILVNSNLVCKVSDFG----LSRRLEDSEATYTTKGGKIPIRWTAPEAIAYR 183

Query: 751 RVSTRGDVCSFGII 764
           + ++  DV SFGI+
Sbjct: 184 KFTSASDVWSFGIV 197

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. This allows ephrin/EphR dimers to form, leading to the activation of the intracellular tyr kinase domain. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). The main effect of ephrin/EphR interaction is cell-cell repulsion or adhesion. Ephrin/EphR signaling is important in neural development and plasticity, cell morphogenesis and proliferation, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. Length = 266

>gnl|CDD|173710 cd05620, STKc_nPKC_delta, Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta

 Score = 44.5 bits (105), Expect = 1e-04
 Identities = 29/80 (36%), Positives = 43/80 (53%), Gaps = 4/80 (5%)

Query: 686 LHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKL-LSGEDQLSKQTQTLATIGYMAP 744
           L F HS  II+ DLK  NV+LD D    I+DFG+ K  + G+   ++ +    T  Y+AP
Sbjct: 109 LQFLHSKGIIYRDLKLDNVMLDRDGHIKIADFGMCKENVFGD---NRASTFCGTPDYIAP 165

Query: 745 EYGTKGRVSTRGDVCSFGII 764
           E     + +   D  SFG++
Sbjct: 166 EILQGLKYTFSVDWWSFGVL 185

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. It slows down cell proliferation, inducing cell cycle arrest and enhancing cell differentiation. PKC-delta is also involved in the regulation of transcription as well as immune and inflammatory responses. It plays a central role in the genotoxic stress response that leads to DNA damaged-induced apoptosis. Length = 316

>gnl|CDD|173709 cd05619, STKc_nPKC_theta, Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta

 Score = 44.2 bits (104), Expect = 2e-04
 Identities = 31/81 (38%), Positives = 43/81 (53%), Gaps = 6/81 (7%)

Query: 686 LHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQL--SKQTQTLATIGYMA 743
           L F HS  I++ DLK  N+LLD D    I+DFG+ K    E+ L  +K      T  Y+A
Sbjct: 109 LQFLHSKGIVYRDLKLDNILLDTDGHIKIADFGMCK----ENMLGDAKTCTFCGTPDYIA 164

Query: 744 PEYGTKGRVSTRGDVCSFGII 764
           PE     + +T  D  SFG++
Sbjct: 165 PEILLGQKYNTSVDWWSFGVL 185

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in several aspects of T-cell biology. Although T-cells also express other PKC isoforms, PKC-theta is unique in that upon antigen stimulation, it is translocated to the plasma membrane at the immunological synapse, where it mediates signals essential for T-cell activation. It is essential for TCR-induced proliferation, cytokine production, T-cell survival, and the differentiation and effector function of T-helper (Th) cells, particularly Th2 and Th17. PKC-theta is being developed as a therapeutic target for Th2-mediated allergic inflammation and Th17-mediated autoimmune diseases. Length = 316

>gnl|CDD|173769 cd08229, STKc_Nek7, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7

 Score = 43.9 bits (103), Expect = 2e-04
 Identities = 31/116 (26%), Positives = 58/116 (50%), Gaps = 17/116 (14%)

Query: 655 RALKSFEDECEVRKRIRHRNLVKI---ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMV 711
           R +K F+ +   ++ I  + + K    + S+LE++H   S  ++H D+KP+NV +    V
Sbjct: 91  RMIKHFKKQ---KRLIPEKTVWKYFVQLCSALEHMH---SRRVMHRDIKPANVFITATGV 144

Query: 712 AHISDFGIAKLLSGEDQLSKQTQTLATIG---YMAPEYGTKGRVSTRGDVCSFGII 764
             + D G+ +  S     SK T   + +G   YM+PE   +   + + D+ S G +
Sbjct: 145 VKLGDLGLGRFFS-----SKTTAAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCL 195

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase. Length = 267

>gnl|CDD|132956 cd06625, STKc_MEKK3_like, Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

 Score = 43.6 bits (103), Expect = 2e-04
 Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 11/79 (13%)

Query: 683 LEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIG-- 740
           LE + + HS  I+H D+K +N+L D      + DFG +K L  +   S  T   +  G  
Sbjct: 114 LEGVEYLHSNMIVHRDIKGANILRDSAGNVKLGDFGASKRL--QTICSSGTGMKSVTGTP 171

Query: 741 -YMAPE------YGTKGRV 752
            +M+PE      YG K  V
Sbjct: 172 YWMSPEVISGEGYGRKADV 190

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK2 and MEKK3 activate MEK5 (also called MKK5), which activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development. MEKK2 and MEKK3 can also activate the MAPKs, c-Jun N-terminal kinase (JNK) and p38, through their respective MAPKKs. Length = 263

>gnl|CDD|132988 cd06657, STKc_PAK4, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4

 Score = 43.9 bits (103), Expect = 2e-04
 Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 2/96 (2%)

Query: 669 RIRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQ 728
           R+    +  +  + L+ L   H+  +IH D+K  ++LL  D    +SDFG    +S E  
Sbjct: 112 RMNEEQIAAVCLAVLKALSVLHAQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKE-- 169

Query: 729 LSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
           + ++   + T  +MAPE  ++       D+ S GI+
Sbjct: 170 VPRRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIM 205

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell morphology and cytoskeletal organization. It is essential for embryonic viability and proper neural development. Mice lacking PAK4 die due to defects in the fetal heart. In addition, their spinal cord motor neurons showed failure to differentiate and migrate. PAK4 also plays a role in cell survival and tumorigenesis. It is overexpressed in many primary tumors including colon, esophageal, and mammary tumors. PAK4 has also been implicated in viral and bacterial infection pathways. Length = 292

>gnl|CDD|173661 cd05570, STKc_PKC, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C

 Score = 43.9 bits (104), Expect = 2e-04
 Identities = 27/69 (39%), Positives = 35/69 (50%), Gaps = 9/69 (13%)

Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTL-- 736
           I   L++LH      II+ DLK  NVLLD +    I+DFG+ K    E  L   T +   
Sbjct: 105 IVLGLQFLH---ERGIIYRDLKLDNVLLDSEGHIKIADFGMCK----EGILGGVTTSTFC 157

Query: 737 ATIGYMAPE 745
            T  Y+APE
Sbjct: 158 GTPDYIAPE 166

Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only require PS. PKCs phosphorylate and modify the activities of a wide variety of cellular proteins including receptors, enzymes, cytoskeletal proteins, transcription factors, and other kinases. They play a central role in signal transduction pathways that regulate cell migration and polarity, proliferation, differentiation, and apoptosis. Also included in this subfamily are the PKC-like proteins, called PKNs. Length = 318

>gnl|CDD|173664 cd05573, STKc_ROCK_NDR_like, Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases

 Score = 44.2 bits (105), Expect = 2e-04
 Identities = 27/93 (29%), Positives = 38/93 (40%), Gaps = 36/93 (38%)

Query: 683 LEYLH-FGHSIPIIHCDLKPSNVLLDEDMVAHI--SDFGIAK----------LLSGEDQL 729
           L+ +H  G     IH D+KP N+L+D D   HI  +DFG+ K           L+    L
Sbjct: 114 LDSVHKLGF----IHRDIKPDNILIDAD--GHIKLADFGLCKKMNKAKDREYYLNDSHNL 167

Query: 730 SKQTQTLA--------------TIG---YMAPE 745
             +   L               T+G   Y+APE
Sbjct: 168 LFRDNVLVRRRDHKQRRVRANSTVGTPDYIAPE 200

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Proteins in this subfamily are involved in regulating many cellular functions including contraction, motility, division, proliferation, apoptosis, morphogenesis, and cytokinesis. Length = 350

>gnl|CDD|173704 cd05613, STKc_MSK1_N, N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 1

 Score = 43.8 bits (103), Expect = 2e-04
 Identities = 25/67 (37%), Positives = 40/67 (59%), Gaps = 4/67 (5%)

Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLAT 738
           I  +LE+LH    + II+ D+K  N+LLD +    ++DFG++K    ED++ +      T
Sbjct: 114 IVLALEHLH---KLGIIYRDIKLENILLDSNGHVVLTDFGLSKEFH-EDEVERAYSFCGT 169

Query: 739 IGYMAPE 745
           I YMAP+
Sbjct: 170 IEYMAPD 176

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK1, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydrophobic motif (HM) of NTD, which facilitates the phosphorylation of the A-loop and activates the NTD, which in turn phosphorylates downstream targets. MSK1 plays a role in the regulation of translational control and transcriptional activation. It phosphorylates the transcription factors, CREB and NFkappaB. It also phosphorylates the nucleosomal proteins H3 and HMG-14. Increased phosphorylation of MEK1 is associated with the development of cerebral ischemic/hypoxic preconditioning. Length = 290

>gnl|CDD|143385 cd07880, STKc_p38gamma_MAPK12, Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase

 Score = 44.2 bits (104), Expect = 2e-04
 Identities = 25/63 (39%), Positives = 35/63 (55%), Gaps = 5/63 (7%)

Query: 683 LEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYM 742
           L+ L + H+  IIH DLKP N+ ++ED    I DFG+A+        S+ T  + T  Y 
Sbjct: 128 LKGLKYIHAAGIIHRDLKPGNLAVNEDCELKILDFGLARQTD-----SEMTGYVVTRWYR 182

Query: 743 APE 745
           APE
Sbjct: 183 APE 185

Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12, is predominantly expressed in skeletal muscle. Unlike p38alpha and p38beta, p38gamma is insensitive to pyridinylimidazoles. It displays an antagonizing function compared to p38alpha. p38gamma inhibits, while p38alpha stimulates, c-Jun phosphorylation and AP-1 mediated transcription. p38gamma also plays a role in the signaling between Ras and the estrogen receptor and has been implicated to increase cell invasion and breast cancer progression. In Xenopus, p38gamma is critical in the meiotic maturation of oocytes. Length = 343

>gnl|CDD|173768 cd08228, STKc_Nek6, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6

 Score = 43.5 bits (102), Expect = 2e-04
 Identities = 38/164 (23%), Positives = 79/164 (48%), Gaps = 22/164 (13%)

Query: 607 DGINSPQAIRRFSYHELLRATDRFSENNLIGIGNGMEVAVKVFHQQYERALKSFEDECEV 666
           D +     +++ ++  +++  D F E+N + I   +E+A         + +K F+ +   
Sbjct: 48  DCVKEIDLLKQLNHPNVIKYLDSFIEDNELNIV--LELADA---GDLSQMIKYFKKQ--- 99

Query: 667 RKRIRHRNLVKI---ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLL 723
           ++ I  R + K    + S++E++H   S  ++H D+KP+NV +    V  + D G+ +  
Sbjct: 100 KRLIPERTVWKYFVQLCSAVEHMH---SRRVMHRDIKPANVFITATGVVKLGDLGLGRFF 156

Query: 724 SGEDQLSKQTQTLATIG---YMAPEYGTKGRVSTRGDVCSFGII 764
           S     SK T   + +G   YM+PE   +   + + D+ S G +
Sbjct: 157 S-----SKTTAAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCL 195

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase and anaphase, and to the midbody during cytokinesis. Length = 267

>gnl|CDD|173639 cd05066, PTKc_EphR_A, Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors

 Score = 43.7 bits (103), Expect = 2e-04
 Identities = 25/87 (28%), Positives = 50/87 (57%), Gaps = 4/87 (4%)

Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQ-TLA 737
           I+S ++YL     +  +H DL   N+L++ ++V  +SDFG++++L  + + +  T+    
Sbjct: 115 IASGMKYLS---DMGYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKI 171

Query: 738 TIGYMAPEYGTKGRVSTRGDVCSFGII 764
            I + APE     + ++  DV S+GI+
Sbjct: 172 PIRWTAPEAIAYRKFTSASDVWSYGIV 198

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion, making it important in neural development and plasticity, cell morphogenesis, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. EphARs and ephrin-A ligands are expressed in multiple areas of the developing brain, especially in the retina and tectum. They are part of a system controlling retinotectal mapping. Length = 267

>gnl|CDD|143384 cd07879, STKc_p38delta_MAPK13, Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase

 Score = 44.1 bits (104), Expect = 2e-04
 Identities = 26/68 (38%), Positives = 35/68 (51%), Gaps = 5/68 (7%)

Query: 678 IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLA 737
           ++   L  L + HS  IIH DLKP N+ ++ED    I DFG+A+    E      T  + 
Sbjct: 122 LVYQMLCGLKYIHSAGIIHRDLKPGNLAVNEDCELKILDFGLARHADAE-----MTGYVV 176

Query: 738 TIGYMAPE 745
           T  Y APE
Sbjct: 177 TRWYRAPE 184

Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13, is found in skeletal muscle, heart, lung, testis, pancreas, and small intestine. It regulates microtubule function by phosphorylating Tau. It activates the c-jun promoter and plays a role in G2 cell cycle arrest. It also controls the degration of c-Myb, which is associated with myeloid leukemia and poor prognosis in colorectal cancer. p38delta is the main isoform involved in regulating the differentiation and apoptosis of keratinocytes. Length = 342

>gnl|CDD|173764 cd08224, STKc_Nek6_Nek7, Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7

 Score = 43.6 bits (103), Expect = 2e-04
 Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 11/70 (15%)

Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLAT 738
           + S+LE++H   S  I+H D+KP+NV +    V  + D G+ +  S     SK T   + 
Sbjct: 115 LCSALEHMH---SKRIMHRDIKPANVFITATGVVKLGDLGLGRFFS-----SKTTAAHSL 166

Query: 739 IG---YMAPE 745
           +G   YM+PE
Sbjct: 167 VGTPYYMSPE 176

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may also be regulators of the p70 ribosomal S6 kinase. Length = 267

>gnl|CDD|173616 PTZ00426, PTZ00426, cAMP-dependent protein kinase catalytic subunit; Provisional

 Score = 43.8 bits (103), Expect = 2e-04
 Identities = 27/64 (42%), Positives = 38/64 (59%), Gaps = 10/64 (15%)

Query: 683 LEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTL-ATIGY 741
            EYL    S+ I++ DLKP N+LLD+D    ++DFG AK+      +  +T TL  T  Y
Sbjct: 144 FEYLQ---SLNIVYRDLKPENLLLDKDGFIKMTDFGFAKV------VDTRTYTLCGTPEY 194

Query: 742 MAPE 745
           +APE
Sbjct: 195 IAPE 198

Length = 340

>gnl|CDD|173720 cd05631, STKc_GRK4, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4

 Score = 43.4 bits (102), Expect = 2e-04
 Identities = 23/53 (43%), Positives = 33/53 (62%), Gaps = 5/53 (9%)

Query: 694 IIHCDLKPSNVLLDEDMVAHISDFGIA-KLLSGEDQLSKQTQTLATIGYMAPE 745
           I++ DLKP N+LLD+     ISD G+A ++  GE    +    + T+GYMAPE
Sbjct: 123 IVYRDLKPENILLDDRGHIRISDLGLAVQIPEGETVRGR----VGTVGYMAPE 171

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found in the testis, but is also present in the cerebellum and kidney. It is expressed as multiple splice variants with different domain architectures. It is post-translationally palmitoylated and localized in the membrane. GRK4 polymorphisms are associated with hypertension and salt sensitivity, as they cause hyperphosphorylation, desensitization, and internalization of the dopamine 1 (D1) receptor while increasing the expression of the angiotensin II type 1 receptor. GRK4 plays a crucial role in the D1 receptor regulation of sodium excretion and blood pressure. Length = 285

>gnl|CDD|133194 cd05063, PTKc_EphR_A2, Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2

 Score = 43.4 bits (102), Expect = 3e-04
 Identities = 34/126 (26%), Positives = 61/126 (48%), Gaps = 11/126 (8%)

Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQ-TLA 737
           I++ ++YL     +  +H DL   N+L++ ++   +SDFG++++L  + + +  T     
Sbjct: 116 IAAGMKYLS---DMNYVHRDLAARNILVNSNLECKVSDFGLSRVLEDDPEGTYTTSGGKI 172

Query: 738 TIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGETCTPVRE-SKYEVHPATTTI 796
            I + APE     + ++  DV SFGI+        M+ GE   P  + S +EV  A    
Sbjct: 173 PIRWTAPEAIAYRKFTSASDVWSFGIVM----WEVMSFGE--RPYWDMSNHEVMKAINDG 226

Query: 797 MEHPLP 802
              P P
Sbjct: 227 FRLPAP 232

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion, making it important in neural development and plasticity, cell morphogenesis, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. The EphA2 receptor is overexpressed in tumor cells and tumor blood vessels in a variety of cancers including breast, prostate, lung, and colon. As a result, it is an attractive target for drug design since its inhibition could affect several aspects of tumor progression. Length = 268

>gnl|CDD|143380 cd07875, STKc_JNK1, Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1

 Score = 43.5 bits (102), Expect = 3e-04
 Identities = 51/174 (29%), Positives = 75/174 (43%), Gaps = 37/174 (21%)

Query: 610 NSPQAIRRFSYHELLRATDRFSENNLIGIGNGMEVAVKVFHQQYERALKSFEDECEVRKR 669
           N   A R +    L++  +     N+IG+ N       VF  Q  ++L+ F+D   +   
Sbjct: 63  NQTHAKRAYRELVLMKCVN---HKNIIGLLN-------VFTPQ--KSLEEFQD-VYIVME 109

Query: 670 IRHRNLVKIISSSLE-----YLHFG--------HSIPIIHCDLKPSNVLLDEDMVAHISD 716
           +   NL ++I   L+     YL +         HS  IIH DLKPSN+++  D    I D
Sbjct: 110 LMDANLCQVIQMELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILD 169

Query: 717 FGIAKLLSGEDQLSKQTQTLATIGYMAPE----YGTKGRVSTRGDVCSFGIISG 766
           FG+A+       +   T  + T  Y APE     G K  V    D+ S G I G
Sbjct: 170 FGLARTAGTSFMM---TPYVVTRYYRAPEVILGMGYKENV----DIWSVGCIMG 216

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jnk1 or Jnk2) could survive but disruption of both genes resulted in lethality. However, recent studies have shown that JNK1 and JNK2 perform distinct functions through specific binding partners and substrates. JNK1 specifically binds with JAMP (JNK1-associated membrane protein), which regulates the duration of JNK1 activity in response to stimuli. Specific JNK1 substrates include Itch and SG10, which are implicated in Th2 responses and airway inflammation, and microtubule dynamics and axodendritic length, respectively. Mice deficient in Jnk1 are protected against arthritis, obesity, type 2 diabetes, cardiac cell death, and non-alcoholic liver disease, suggesting that JNK1 may play roles in the pathogenesis of these diseases. Length = 364

>gnl|CDD|173662 cd05571, STKc_PKB, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B

 Score = 43.6 bits (103), Expect = 3e-04
 Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 9/69 (13%)

Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGED-QLSKQTQTL- 736
           I S+L YLH   S  +++ DLK  N++LD+D    I+DFG+ K    E        +T  
Sbjct: 104 IVSALGYLH---SCDVVYRDLKLENLMLDKDGHIKITDFGLCK----EGISDGATMKTFC 156

Query: 737 ATIGYMAPE 745
            T  Y+APE
Sbjct: 157 GTPEYLAPE 165

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having been implicated in tumor initiation, progression, and metastasis. Length = 323

>gnl|CDD|183880 PRK13184, pknD, serine/threonine-protein kinase; Reviewed

 Score = 44.0 bits (104), Expect = 3e-04
 Identities = 30/104 (28%), Positives = 47/104 (45%), Gaps = 23/104 (22%)

Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQ---------- 728
           I +++EY+H   S  ++H DLKP N+LL       I D+G A     E++          
Sbjct: 122 ICATIEYVH---SKGVLHRDLKPDNILLGLFGEVVILDWGAAIFKKLEEEDLLDIDVDER 178

Query: 729 ------LSKQTQTLATIGYMAPE--YGTKGRVSTRGDVCSFGII 764
                 ++   + + T  YMAPE   G     ST  D+ + G+I
Sbjct: 179 NICYSSMTIPGKIVGTPDYMAPERLLGVPASEST--DIYALGVI 220

Length = 932

>gnl|CDD|133189 cd05058, PTKc_Met_Ron, Catalytic domain of the Protein Tyrosine Kinases, Met and Ron

 Score = 42.8 bits (101), Expect = 4e-04
 Identities = 27/88 (30%), Positives = 46/88 (52%), Gaps = 5/88 (5%)

Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLAT 738
           ++  +EYL    S   +H DL   N +LDE     ++DFG+A+ +  ++  S    T A 
Sbjct: 107 VAKGMEYLA---SKKFVHRDLAARNCMLDESFTVKVADFGLARDIYDKEYYSVHNHTGAK 163

Query: 739 --IGYMAPEYGTKGRVSTRGDVCSFGII 764
             + +MA E     + +T+ DV SFG++
Sbjct: 164 LPVKWMALESLQTQKFTTKSDVWSFGVL 191

Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also called the HGF receptor. HGF/Met signaling plays a role in growth, transformation, cell motility, invasion, metastasis, angiogenesis, wound healing, and tissue regeneration. Aberrant expression of Met through mutations or gene amplification is associated with many human cancers including hereditary papillary renal and gastric carcinomas. The ligand for Ron is macrophage stimulating protein (MSP). Ron signaling is important in regulating cell motility, adhesion, proliferation, and apoptosis. Aberrant Ron expression is implicated in tumorigenesis and metastasis. Length = 262

>gnl|CDD|132976 cd06645, STKc_MAP4K3, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 3

 Score = 42.7 bits (100), Expect = 4e-04
 Identities = 27/110 (24%), Positives = 56/110 (50%), Gaps = 5/110 (4%)

Query: 659 SFEDECEVRKRIRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFG 718
           S +D   V   +    +  +   +L+ L++ HS   +H D+K +N+LL ++    ++DFG
Sbjct: 92  SLQDIYHVTGPLSESQIAYVSRETLQGLYYLHSKGKMHRDIKGANILLTDNGHVKLADFG 151

Query: 719 IAKLLSGEDQLSKQTQTLATIGYMAPEYGT---KGRVSTRGDVCSFGIIS 765
           ++  ++    ++K+   + T  +MAPE      KG  +   D+ + GI +
Sbjct: 152 VSAQITA--TIAKRKSFIGTPYWMAPEVAAVERKGGYNQLCDIWAVGITA 199

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAP4K3 plays a role in the nutrient-responsive pathway of mTOR (mammalian target of rapamycin) signaling. MAP4K3 is required in the activation of S6 kinase by amino acids and for the phosphorylation of the mTOR-regulated inhibitor of eukaryotic initiation factor 4E. mTOR regulates ribosome biogenesis and protein translation, and is frequently deregulated in cancer. Length = 267

>gnl|CDD|133187 cd05056, PTKc_FAK, Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase

 Score = 42.8 bits (101), Expect = 4e-04
 Identities = 26/100 (26%), Positives = 48/100 (48%), Gaps = 7/100 (7%)

Query: 667 RKRIRHRNLVKI---ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLL 723
           +  +   +L+     +S++L YL    S   +H D+   NVL+       + DFG+++ L
Sbjct: 101 KYSLDLASLILYSYQLSTALAYLE---SKRFVHRDIAARNVLVSSPDCVKLGDFGLSRYL 157

Query: 724 SGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGI 763
             ++   K ++    I +MAPE     R ++  DV  FG+
Sbjct: 158 E-DESYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGV 196

Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions and at growth factor receptors. Through diverse molecular interactions, FAK functions as a biosensor or integrator to control cell motility. It is a key regulator of cell survival, proliferation, migration and invasion, and thus plays an important role in the development and progression of cancer. Src binds to autophosphorylated FAK forming the FAK-Src dual kinase complex, which is activated in a wide variety of tumor cells and generates signals promoting growth and metastasis. FAK is being developed as a target for cancer therapy. Length = 270

>gnl|CDD|133238 cd05107, PTKc_PDGFR_beta, Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta

 Score = 43.1 bits (101), Expect = 4e-04
 Identities = 26/79 (32%), Positives = 39/79 (49%)

Query: 686 LHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPE 745
           + F  S   +H DL   NVL+ E  +  I DFG+A+ +  +     +  T   + +MAPE
Sbjct: 252 MEFLASKNCVHRDLAARNVLICEGKLVKICDFGLARDIMRDSNYISKGSTFLPLKWMAPE 311

Query: 746 YGTKGRVSTRGDVCSFGII 764
                  +T  DV SFGI+
Sbjct: 312 SIFNNLYTTLSDVWSFGIL 330

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-DD induce PDGFR beta homodimerization. PDGFR signaling plays many roles in normal embryonic development and adult physiology. PDGFR beta signaling leads to a variety of cellular effects including the stimulation of cell growth and chemotaxis, as well as the inhibition of apoptosis and GAP junctional communication. It is critical in normal angiogenesis as it is involved in the recruitment of pericytes and smooth muscle cells essential for vessel stability. Aberrant PDGFR beta expression is associated with some human cancers. The continuously-active fusion proteins of PDGFR beta with COL1A1 and TEL are associated with dermatofibrosarcoma protuberans (DFSP) and a subset of chronic myelomonocytic leukemia (CMML), respectively. Length = 401

>gnl|CDD|173684 cd05593, STKc_PKB_gamma, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma

 Score = 43.1 bits (101), Expect = 4e-04
 Identities = 36/106 (33%), Positives = 49/106 (46%), Gaps = 18/106 (16%)

Query: 640 NGMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVKIISSSLEYLHFGHSIPIIHCDL 699
           NG E+    FH   ER         E R R     +V    S+L+YLH G    I++ DL
Sbjct: 78  NGGEL---FFHLSRERVFS------EDRTRFYGAEIV----SALDYLHSGK---IVYRDL 121

Query: 700 KPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPE 745
           K  N++LD+D    I+DFG+ K   G    +       T  Y+APE
Sbjct: 122 KLENLMLDKDGHIKITDFGLCK--EGITDAATMKTFCGTPEYLAPE 165

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulated in estrogen-deficient breast cancer cells, androgen-independent prostate cancer cells, and primary ovarian tumors. It acts as a key mediator in the genesis of ovarian cancer. Length = 328

>gnl|CDD|173705 cd05614, STKc_MSK2_N, N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2

 Score = 43.0 bits (101), Expect = 5e-04
 Identities = 23/64 (35%), Positives = 38/64 (59%), Gaps = 4/64 (6%)

Query: 682 SLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGY 741
           +LE+LH    + I++ D+K  N+LLD +    ++DFG++K    E++  +      TI Y
Sbjct: 117 ALEHLH---KLGIVYRDIKLENILLDSEGHVVLTDFGLSKEFLSEEK-ERTYSFCGTIEY 172

Query: 742 MAPE 745
           MAPE
Sbjct: 173 MAPE 176

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydrophobic motif (HM) of NTD, which facilitates the phosphorylation of the A-loop and activates the NTD, which in turn phosphorylates downstream targets. MSK2 and MSK1 play nonredundant roles in activating histone H3 kinases, which play pivotal roles in compaction of the chromatin fiber. MSK2 is the required H3 kinase in response to stress stimuli and activation of the p38 MAPK pathway. MSK2 also plays a role in the pathogenesis of psoriasis. Length = 332

>gnl|CDD|173658 cd05114, PTKc_Tec_Rlk, Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase

 Score = 42.1 bits (99), Expect = 5e-04
 Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 4/86 (4%)

Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLAT 738
           +   +EYL        IH DL   N L+    V  +SDFG+ + +  +D+ +  +     
Sbjct: 109 VCEGMEYLERNS---FIHRDLAARNCLVSSTGVVKVSDFGMTRYVL-DDEYTSSSGAKFP 164

Query: 739 IGYMAPEYGTKGRVSTRGDVCSFGII 764
           + +  PE     + S++ DV SFG++
Sbjct: 165 VKWSPPEVFNFSKYSSKSDVWSFGVL 190

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. Instead of PH, Rlk contains an N-terminal cysteine-rich region. In addition to PH, Tec also contains the Tec homology (TH) domain with proline-rich and zinc-binding regions. Tec kinases are expressed mainly by haematopoietic cells. Tec is more widely-expressed than other Tec subfamily kinases. It is found in endothelial cells, both B- and T-cells, and a variety of myeloid cells including mast cells, erythroid cells, platelets, macrophages and neutrophils. Rlk is expressed in T-cells and mast cell lines. Tec and Rlk are both key components of T-cell receptor (TCR) signaling. They are important in TCR-stimulated proliferation, IL-2 production and phopholipase C-gamma1 activation. Length = 256

>gnl|CDD|132961 cd06630, STKc_MEKK1, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

 Score = 42.2 bits (99), Expect = 6e-04
 Identities = 28/68 (41%), Positives = 36/68 (52%), Gaps = 10/68 (14%)

Query: 683 LEYLHFGHSIPIIHCDLKPSNVLLDED-MVAHISDFGIAKLL----SGEDQLSKQTQTLA 737
           L YLH      IIH D+K +N+L+D       I+DFG A  L    +G  +   Q Q L 
Sbjct: 116 LSYLHENQ---IIHRDVKGANLLIDSTGQRLRIADFGAAARLAAKGTGAGEF--QGQLLG 170

Query: 738 TIGYMAPE 745
           TI +MAPE
Sbjct: 171 TIAFMAPE 178

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their respective MAPKKs, MEK1/2 and MKK4/MKK7, respectively. MEKK1 is important in regulating cell survival and apoptosis. MEKK1 also plays a role in cell migration, tissue maintenance and homeostasis, and wound healing. Length = 268

>gnl|CDD|173742 cd07845, STKc_CDK10, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10

 Score = 42.4 bits (100), Expect = 6e-04
 Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 2/63 (3%)

Query: 683 LEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYM 742
           L  L + H   IIH DLK SN+LL +     I+DFG+A+      +    T  + T+ Y 
Sbjct: 118 LRGLQYLHENFIIHRDLKVSNLLLTDKGCLKIADFGLARTYGLPAK--PMTPKVVTLWYR 175

Query: 743 APE 745
           APE
Sbjct: 176 APE 178

Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing increases the transcription of c-RAF and the activation of the p42/p44 MAPK pathway, which leads to antiestrogen resistance. Patients who express low levels of CDK10 relapse early on tamoxifen. Length = 309

>gnl|CDD|143379 cd07874, STKc_JNK3, Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3

 Score = 42.4 bits (99), Expect = 6e-04
 Identities = 38/126 (30%), Positives = 57/126 (45%), Gaps = 17/126 (13%)

Query: 654 ERALKSFEDECEVRKRIRHRNLVKIISSSLE-----YLHFG--------HSIPIIHCDLK 700
           +++L+ F+D   V + +   NL ++I   L+     YL +         HS  IIH DLK
Sbjct: 88  QKSLEEFQDVYLVME-LMDANLCQVIQMELDHERMSYLLYQMLCGIKHLHSAGIIHRDLK 146

Query: 701 PSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCS 760
           PSN+++  D    I DFG+A+       +   T  + T  Y APE           D+ S
Sbjct: 147 PSNIVVKSDCTLKILDFGLARTAGTSFMM---TPYVVTRYYRAPEVILGMGYKENVDIWS 203

Query: 761 FGIISG 766
            G I G
Sbjct: 204 VGCIMG 209

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, stroke, sciatic axotomy neural death, and neuronal death due to NGF deprivation, oxidative stress, or exposure to beta-amyloid peptide. This suggests that JNK3 may play roles in the pathogenesis of these diseases. Length = 355

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 38.3 bits (90), Expect = 7e-04
 Identities = 22/60 (36%), Positives = 35/60 (58%)

Query: 356 SLETILMANCSISGNIPQVVGNLSNLLVLELGGNNLTGPIPVTFSQLQTLQAFDLTRNKL 415
           +L+++ ++N  ++         L NL VL+L GNNLT   P  FS L +L++ DL+ N L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.9 bits (89), Expect = 7e-04
 Identities = 23/61 (37%), Positives = 37/61 (60%), Gaps = 2/61 (3%)

Query: 77  SLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQLFGSLSSFIF-NMSSMTTIDLSINR 135
           +L++LDLS+N+L+     +   +  LK+LD S N L  S+S   F  + S+ ++DLS N 
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNL-TSISPEAFSGLPSLRSLDLSGNN 59

Query: 136 L 136
           L
Sbjct: 60  L 60

Length = 60

>gnl|CDD|173686 cd05595, STKc_PKB_beta, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta

 Score = 42.3 bits (99), Expect = 7e-04
 Identities = 35/106 (33%), Positives = 49/106 (46%), Gaps = 18/106 (16%)

Query: 640 NGMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVKIISSSLEYLHFGHSIPIIHCDL 699
           NG E+    FH   ER         E R R     +V    S+LEYLH   S  +++ D+
Sbjct: 78  NGGEL---FFHLSRERVFT------EERARFYGAEIV----SALEYLH---SRDVVYRDI 121

Query: 700 KPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPE 745
           K  N++LD+D    I+DFG+ K   G    +       T  Y+APE
Sbjct: 122 KLENLMLDKDGHIKITDFGLCK--EGISDGATMKTFCGTPEYLAPE 165

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in PKB-beta display normal growth weights but exhibit severe insulin resistance and diabetes, accompanied by lipoatrophy and B-cell failure. Length = 323

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 42.3 bits (100), Expect = 7e-04
 Identities = 28/126 (22%), Positives = 49/126 (38%), Gaps = 14/126 (11%)

Query: 50  NSH-RVIGLNISSFNLQGT--ITPQLGNLSSLQTLDLSHNKLSGNI-----PSSIFNMHT 101
           N +  V+ LN +    +G   +   L +L SL+ L+L  N L+         + +    +
Sbjct: 192 NCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNIS 251

Query: 102 LKLLDFSDNQL----FGSLSSFIFNMSSMTTIDLSINRLSGELPANICKIPSTLSKCKQL 157
           L  L  S N +       L+  +    S+  +DL  N+   E    +    S L    +L
Sbjct: 252 LLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLA--ESLLEPGNEL 309

Query: 158 EELNLG 163
           E L + 
Sbjct: 310 ESLWVK 315

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|132980 cd06649, PKc_MEK2, Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2

 Score = 42.3 bits (99), Expect = 7e-04
 Identities = 32/99 (32%), Positives = 47/99 (47%), Gaps = 9/99 (9%)

Query: 668 KRIRHRNLVKI---ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLS 724
           KRI    L K+   +   L YL   H I  +H D+KPSN+L++      + DFG+    S
Sbjct: 98  KRIPEEILGKVSIAVLRGLAYLREKHQI--MHRDVKPSNILVNSRGEIKLCDFGV----S 151

Query: 725 GEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGI 763
           G+   S     + T  YM+PE       S + D+ S G+
Sbjct: 152 GQLIDSMANSFVGTRSYMSPERLQGTHYSVQSDIWSMGL 190

Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downstream targets, extracellular signal-regulated kinase (ERK) 1 and ERK2, on specific threonine and tyrosine residues. The ERK cascade starts with extracellular signals including growth factors, hormones, and neurotransmitters, which act through receptors and ion channels to initiate intracellular signaling that leads to the activation at the MAPKKK (Raf-1 or MOS) level, which leads to the transmission of signals to MEK2, and finally to ERK1/2. The ERK cascade plays an important role in cell proliferation, differentiation, oncogenic transformation, and cell cycle control, as well as in apoptosis and cell survival under certain conditions. Gain-of-function mutations in genes encoding ERK cascade proteins, including MEK2, cause cardiofaciocutaneous (CFC) syndrome, a condition leading to multiple congenital anomalies and mental retardation in patients. Length = 331

>gnl|CDD|173691 cd05600, STKc_Sid2p_Dbf2p, Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases

 Score = 42.4 bits (100), Expect = 8e-04
 Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 11/64 (17%)

Query: 690 HSIPIIHCDLKPSNVLLDEDMVAHI--SDFGIAKLLSGEDQLSKQTQTLATIGYMAPE-- 745
           H +  IH DLKP N L+D     HI  +DFG++K       ++     + +  YMAPE  
Sbjct: 118 HELGYIHRDLKPENFLIDAS--GHIKLTDFGLSK-----GIVTYANSVVGSPDYMAPEVL 170

Query: 746 YGTK 749
            G  
Sbjct: 171 RGKG 174

Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis. Dbf2p is important in regulating the mitotic exit network (MEN) and in cytokinesis. Length = 333

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.5 bits (88), Expect = 0.001
 Identities = 18/56 (32%), Positives = 28/56 (50%)

Query: 57  LNISSFNLQGTITPQLGNLSSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQL 112
           L++S+  L          L +L+ LDLS N L+   P +   + +L+ LD S N L
Sbjct: 5   LDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|173678 cd05587, STKc_cPKC, Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C

 Score = 41.7 bits (98), Expect = 0.001
 Identities = 26/61 (42%), Positives = 33/61 (54%), Gaps = 4/61 (6%)

Query: 686 LHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTL-ATIGYMAP 744
           L F HS  II+ DLK  NV+LD +    I+DFG+ K         K T+T   T  Y+AP
Sbjct: 114 LFFLHSKGIIYRDLKLDNVMLDAEGHIKIADFGMCKENIFGG---KTTRTFCGTPDYIAP 170

Query: 745 E 745
           E
Sbjct: 171 E 171

Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory domain. There are four cPKC isoforms, named alpha, betaI, betaII, and gamma. cPKCs are potent kinases for histones, myelin basic protein, and protamine. PKC-gamma is mainly expressed in neuronal tissues. It plays a role in protection from ischemia. Length = 324

>gnl|CDD|173693 cd05602, STKc_SGK1, Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1

 Score = 41.5 bits (97), Expect = 0.001
 Identities = 35/106 (33%), Positives = 50/106 (47%), Gaps = 18/106 (16%)

Query: 640 NGMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVKIISSSLEYLHFGHSIPIIHCDL 699
           NG E+    +H Q ER        C +  R R       I+S+L YLH   S+ I++ DL
Sbjct: 79  NGGEL---FYHLQRER--------CFLEPRARF--YAAEIASALGYLH---SLNIVYRDL 122

Query: 700 KPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPE 745
           KP N+LLD      ++DFG+ K     +     +    T  Y+APE
Sbjct: 123 KPENILLDSQGHIVLTDFGLCK--ENIEHNGTTSTFCGTPEYLAPE 166

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt sensitivity, memory consolidation, and cardiac repolarization. A common SGK1 variant is associated with increased blood pressure and body weight. SGK1 may also contribute to tumor growth, neurodegeneration, fibrosing disease, and ischemia. Length = 325

>gnl|CDD|173654 cd05108, PTKc_EGFR, Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor

 Score = 41.1 bits (96), Expect = 0.001
 Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 3/85 (3%)

Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLAT 738
           I+  + YL       ++H DL   NVL+       I+DFG+AKLL  +++          
Sbjct: 118 IAKGMNYLEERR---LVHRDLAARNVLVKTPQHVKITDFGLAKLLGADEKEYHAEGGKVP 174

Query: 739 IGYMAPEYGTKGRVSTRGDVCSFGI 763
           I +MA E       + + DV S+G+
Sbjct: 175 IKWMALESILHRIYTHQSDVWSYGV 199

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. Ligands for EGFR include EGF, heparin binding EGF-like growth factor (HBEGF), epiregulin, amphiregulin, TGFalpha, and betacellulin. Upon ligand binding, EGFR can form homo- or heterodimers with other EGFR subfamily members. The EGFR signaling pathway is one of the most important pathways regulating cell proliferation, differentiation, survival, and growth. Overexpression and mutation in the kinase domain of EGFR have been implicated in the development and progression of a variety of cancers. A number of monoclonal antibodies and small molecule inhibitors have been developed that target EGFR, including the antibodies Cetuximab and Panitumumab, which are used in combination with other therapies for the treatment of colorectal cancer and non-small cell lung carcinoma (NSCLC). The small molecule inhibitors Gefitinib (Iressa) and Erlotinib (Tarceva), already used for NSCLC, are undergoing clinical trials for other types of cancer including gastrointestinal, breast, head and neck, and bladder. Length = 316

>gnl|CDD|133240 cd05109, PTKc_HER2, Catalytic domain of the Protein Tyrosine Kinase, HER2

 Score = 40.8 bits (95), Expect = 0.002
 Identities = 29/102 (28%), Positives = 49/102 (48%), Gaps = 6/102 (5%)

Query: 665 EVRKRIRHRNLVKI---ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAK 721
           E + RI  ++L+     I+  + YL     + ++H DL   NVL+       I+DFG+A+
Sbjct: 101 ENKDRIGSQDLLNWCVQIAKGMSYLE---EVRLVHRDLAARNVLVKSPNHVKITDFGLAR 157

Query: 722 LLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGI 763
           LL  ++           I +MA E     R + + DV S+G+
Sbjct: 158 LLDIDETEYHADGGKVPIKWMALESILHRRFTHQSDVWSYGV 199

Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. HER2 does not bind to any known EGFR subfamily ligands, but contributes to the kinase activity of all possible heterodimers. It acts as the preferred partner with other ligand-bound EGFR proteins and functions as a signal amplifier, with the HER2-HER3 heterodimer being the most potent pair in mitogenic signaling. HER2 plays an important role in cell development, proliferation, survival and motility. Overexpression of HER2 results in its activation and downstream signaling, even in the absence of ligand. HER2 overexpression, mainly due to gene amplification, has been shown in a variety of human cancers. Its role in breast cancer is especially well-documented. HER2 is up-regulated in about 25% of breast tumors and is associated with increases in tumor aggressiveness, recurrence and mortality. HER2 is a target for monoclonal antibodies and small molecule inhibitors, which are being developed as treatments for cancer. The first humanized antibody approved for clinical use is Trastuzumab (Herceptin), which is being used in combination with other therapies to improve the survival rates of patients with HER2-overexpressing breast cancer. Length = 279

>gnl|CDD|173700 cd05609, STKc_MAST, Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase

 Score = 40.9 bits (96), Expect = 0.002
 Identities = 30/79 (37%), Positives = 42/79 (53%), Gaps = 20/79 (25%)

Query: 682 SLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHI--SDFGIAK--LLS-----GEDQLSKQ 732
           +LEYLH   +  I+H DLKP N+L+    + HI  +DFG++K  L+S      E  + K 
Sbjct: 113 ALEYLH---NYGIVHRDLKPDNLLITS--MGHIKLTDFGLSKIGLMSLTTNLYEGHIEKD 167

Query: 733 T------QTLATIGYMAPE 745
           T      Q   T  Y+APE
Sbjct: 168 TREFLDKQVCGTPEYIAPE 186

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that are also expressed at neuromuscular junctions and postsynaptic densities. MAST1, MAST2, and MAST3 bind and phosphorylate the tumor suppressor PTEN, and may contribute to the regulation and stabilization of PTEN. MAST2 is involved in the regulation of the Fc-gamma receptor of the innate immune response in macrophages, and may also be involved in the regulation of the Na+/H+ exchanger NHE3. Length = 305

>gnl|CDD|173765 cd08225, STKc_Nek5, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5

 Score = 40.7 bits (95), Expect = 0.002
 Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 3/76 (3%)

Query: 690 HSIPIIHCDLKPSNVLLDED-MVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGT 748
           H   I+H D+K  N+ L ++ MVA + DFGIA+ L+   +L+     + T  Y++PE   
Sbjct: 118 HDRKILHRDIKSQNIFLSKNGMVAKLGDFGIARQLNDSMELAY--TCVGTPYYLSPEICQ 175

Query: 749 KGRVSTRGDVCSFGII 764
               + + D+ S G +
Sbjct: 176 NRPYNNKTDIWSLGCV 191

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown. Length = 257

>gnl|CDD|177557 PHA03209, PHA03209, serine/threonine kinase US3; Provisional

 Score = 41.0 bits (96), Expect = 0.002
 Identities = 24/97 (24%), Positives = 43/97 (44%), Gaps = 3/97 (3%)

Query: 668 KRIRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGED 727
           + +     + I    LE L + H+  IIH D+K  N+ +++     I D G A+      
Sbjct: 152 RPLPIDQALIIEKQILEGLRYLHAQRIIHRDVKTENIFINDVDQVCIGDLGAAQFPVVAP 211

Query: 728 QLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
                  T+ T    APE   + + +++ D+ S GI+
Sbjct: 212 AFLGLAGTVET---NAPEVLARDKYNSKADIWSAGIV 245

Length = 357

>gnl|CDD|173665 cd05574, STKc_phototropin_like, Catalytic domain of Phototropin-like Protein Serine/Threonine Kinases

 Score = 40.7 bits (96), Expect = 0.002
 Identities = 21/49 (42%), Positives = 27/49 (55%), Gaps = 7/49 (14%)

Query: 683 LEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHI--SDFGIAKLLSGEDQL 729
           LEYLH    + I++ DLKP N+LL E    HI  SDF ++K    E   
Sbjct: 116 LEYLH---LLGIVYRDLKPENILLHES--GHIMLSDFDLSKQSDVEPPP 159

Serine/Threonine Kinases (STKs), Phototropin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The phototropin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Included in this subfamily are plant phototropins and predominantly uncharacterized fungal STKs whose catalytic domains resemble the phototropin kinase domain. One protein from Neurospora crassa is called nrc-2. Phototropins are blue-light receptors that control responses such as phototropism, stromatal opening, and chloroplast movement in order to optimize the photosynthetic efficiency of plants. They are light-activated STKs that contain an N-terminal photosensory domain and a C-terminal catalytic domain. The N-terminal domain contains two LOV (Light, Oxygen or Voltage) domains that binds FMN. Photoexcitation of the LOV domains results in autophosphorylation at multiple sites and activation of the catalytic domain. Neurospora crassa nrc-2 plays a role in growth and development by controlling entry into the conidiation program. Length = 316

>gnl|CDD|240344 PTZ00283, PTZ00283, serine/threonine protein kinase; Provisional

 Score = 41.0 bits (96), Expect = 0.002
 Identities = 24/81 (29%), Positives = 43/81 (53%), Gaps = 4/81 (4%)

Query: 686 LHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSG--EDQLSKQTQTLATIGYMA 743
           +H  HS  +IH D+K +N+LL  + +  + DFG +K+ +    D + +      T  Y+A
Sbjct: 156 VHHVHSKHMIHRDIKSANILLCSNGLVKLGDFGFSKMYAATVSDDVGR--TFCGTPYYVA 213

Query: 744 PEYGTKGRVSTRGDVCSFGII 764
           PE   +   S + D+ S G++
Sbjct: 214 PEIWRRKPYSKKADMFSLGVL 234

Length = 496

>gnl|CDD|173758 cd08218, STKc_Nek1, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1

 Score = 40.2 bits (94), Expect = 0.002
 Identities = 21/75 (28%), Positives = 40/75 (53%), Gaps = 2/75 (2%)

Query: 690 HSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTK 749
           H   I+H D+K  N+ L +D    + DFGIA++L+   +L++    + T  Y++PE    
Sbjct: 118 HDRKILHRDIKSQNIFLTKDGTIKLGDFGIARVLNSTVELAR--TCIGTPYYLSPEICEN 175

Query: 750 GRVSTRGDVCSFGII 764
              + + D+ + G +
Sbjct: 176 RPYNNKSDIWALGCV 190

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycystic kidney disease, which is characterized by benign polycystic tumors formed by abnormal overgrowth of renal epithelial cells. It appears also to be involved in DNA damage response, and may be important for both correct DNA damage checkpoint activation and DNA repair. Length = 256

>gnl|CDD|143372 cd07867, STKc_CDC2L6, Catalytic domain of Serine/Threonine Kinase, Cell Division Cycle 2-like 6

 Score = 40.4 bits (94), Expect = 0.002
 Identities = 30/99 (30%), Positives = 51/99 (51%), Gaps = 7/99 (7%)

Query: 673 RNLVK-IISSSLEYLHFGHSIPIIHCDLKPSNVLL----DEDMVAHISDFGIAKLLSGE- 726
           R++VK ++   L+ +H+ H+  ++H DLKP+N+L+     E     I+D G A+L +   
Sbjct: 107 RSMVKSLLYQILDGIHYLHANWVLHRDLKPANILVMGEGPERGRVKIADMGFARLFNSPL 166

Query: 727 DQLSKQTQTLATIGYMAPEYGTKGRVSTRG-DVCSFGII 764
             L+     + T  Y APE     R  T+  D+ + G I
Sbjct: 167 KPLADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCI 205

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 6 (CDC2L6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L6 is also called CDK8-like and was previously referred to as CDK11. However, this is a confusing nomenclature as CDC2L6 is distinct from CDC2L1, which is represented by the two protein products from its gene, called CDK11(p110) and CDK11(p58), as well as the caspase-processed CDK11(p46). CDK11(p110), CDK11(p58), and CDK11(p46)do not belong to this subfamily. CDC2L6 is an associated protein of Mediator, a multiprotein complex that provides a platform to connect transcriptional and chromatin regulators and cofactors, in order to activate and mediate RNA polymerase II transcription. CDC2L6 is localized mainly in the nucleus amd exerts an opposing effect to CDK8 in VP16-dependent transcriptional activation by being a negative regulator. Length = 317

>gnl|CDD|132974 cd06643, STKc_SLK, Catalytic domain of the Protein Serine/Threonine Kinase, Ste20-like kinase

 Score = 40.4 bits (94), Expect = 0.003
 Identities = 29/104 (27%), Positives = 49/104 (47%), Gaps = 7/104 (6%)

Query: 665 EVRKRIRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLS 724
           E+ + +    +  +   +LE L++ H   IIH DLK  N+L   D    ++DFG++    
Sbjct: 95  ELERPLTEPQIRVVCKQTLEALNYLHENKIIHRDLKAGNILFTLDGDIKLADFGVSA--K 152

Query: 725 GEDQLSKQTQTLATIGYMAPEY----GTKGR-VSTRGDVCSFGI 763
               + ++   + T  +MAPE      +K R    + DV S GI
Sbjct: 153 NTRTIQRRDSFIGTPYWMAPEVVMCETSKDRPYDYKADVWSLGI 196

Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration. Length = 282

>gnl|CDD|177649 PLN00009, PLN00009, cyclin-dependent kinase A; Provisional

 Score = 40.2 bits (94), Expect = 0.003
 Identities = 33/111 (29%), Positives = 52/111 (46%), Gaps = 7/111 (6%)

Query: 657 LKSFEDECEVRKRIRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVA-HIS 715
           LK   D      +   R +   +   L  + + HS  ++H DLKP N+L+D    A  ++
Sbjct: 87  LKKHMDSSPDFAK-NPRLIKTYLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLA 145

Query: 716 DFGIAKLLSGEDQLSKQTQTLATIGYMAPE--YGTKGRVSTRGDVCSFGII 764
           DFG+A+       +   T  + T+ Y APE   G++   ST  D+ S G I
Sbjct: 146 DFGLARAFG--IPVRTFTHEVVTLWYRAPEILLGSR-HYSTPVDIWSVGCI 193

Length = 294

>gnl|CDD|173677 cd05586, STKc_Sck1_like, Catalytic domain of Suppressor of loss of cAMP-dependent protein kinase-like Protein Serine/Threonine Kinases

 Score = 40.3 bits (94), Expect = 0.003
 Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 7/65 (10%)

Query: 682 SLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTL-ATIG 740
           +LE+LH      I++ DLKP N+LLD      + DFG++K    +++    T T   T  
Sbjct: 108 ALEHLH---KYDIVYRDLKPENILLDATGHIALCDFGLSKANLTDNKT---TNTFCGTTE 161

Query: 741 YMAPE 745
           Y+APE
Sbjct: 162 YLAPE 166

Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of yeast to environmental changes. Length = 330

>gnl|CDD|133175 cd05043, PTK_Ryk, Pseudokinase domain of Ryk (Receptor related to tyrosine kinase)

 Score = 40.1 bits (94), Expect = 0.003
 Identities = 29/115 (25%), Positives = 50/115 (43%), Gaps = 11/115 (9%)

Query: 657 LKSFEDEC-----EVRKRIRHRNLVKI---ISSSLEYLHFGHSIPIIHCDLKPSNVLLDE 708
           LK F  +C        + +  + LV +   I+  + YLH      +IH D+   N ++DE
Sbjct: 96  LKLFLQQCRLGEANNPQALSTQQLVHMAIQIACGMSYLH---KRGVIHKDIAARNCVIDE 152

Query: 709 DMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGI 763
           ++   I+D  +++ L   D           + +MA E       S+  DV SFG+
Sbjct: 153 ELQVKITDNALSRDLFPMDYHCLGDNENRPVKWMALESLVNKEYSSASDVWSFGV 207

Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It acts as a chemorepulsive axon guidance receptor of Wnt glycoproteins and is responsible for the establishment of axon tracts during the development of the central nervous system. In addition, studies in mice reveal that Ryk is essential in skeletal, craniofacial, and cardiac development. Thus, it appears Ryk is involved in signal transduction despite its lack of kinase activity. Ryk may function as an accessory protein that modulates the signals coming from catalytically active partner RTKs such as the Eph receptors. Length = 280

>gnl|CDD|143373 cd07868, STKc_CDK8, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 8

 Score = 40.0 bits (93), Expect = 0.003
 Identities = 30/99 (30%), Positives = 50/99 (50%), Gaps = 7/99 (7%)

Query: 673 RNLVK-IISSSLEYLHFGHSIPIIHCDLKPSNVLL----DEDMVAHISDFGIAKLLSGE- 726
           R +VK ++   L+ +H+ H+  ++H DLKP+N+L+     E     I+D G A+L +   
Sbjct: 107 RGMVKSLLYQILDGIHYLHANWVLHRDLKPANILVMGEGPERGRVKIADMGFARLFNSPL 166

Query: 727 DQLSKQTQTLATIGYMAPEYGTKGRVSTRG-DVCSFGII 764
             L+     + T  Y APE     R  T+  D+ + G I
Sbjct: 167 KPLADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCI 205

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK8 can act as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA polymerase II (RNAP II)-dependent transcription. CDK8 phosphorylates cyclin H, a subunit of the general transcription factor TFIIH, which results in the inhibition of TFIIH-dependent phosphorylation of the C-terminal domain (CTD) of RNAP II, facilitating the inhibition of transcription. It has also been shown to promote transcription by a mechanism that is likely to involve RNAP II phosphorylation. CDK8 also functions as a stimulus-specific positive coregulator of p53 transcriptional responses. Length = 317

>gnl|CDD|132981 cd06650, PKc_MEK1, Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1

 Score = 40.0 bits (93), Expect = 0.003
 Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 6/81 (7%)

Query: 683 LEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYM 742
           L YL   H I  +H D+KPSN+L++      + DFG+    SG+   S     + T  YM
Sbjct: 116 LTYLREKHKI--MHRDVKPSNILVNSRGEIKLCDFGV----SGQLIDSMANSFVGTRSYM 169

Query: 743 APEYGTKGRVSTRGDVCSFGI 763
           +PE       S + D+ S G+
Sbjct: 170 SPERLQGTHYSVQSDIWSMGL 190

Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downstream targets, extracellular signal-regulated kinase (ERK) 1 and ERK2, on specific threonine and tyrosine residues. The ERK cascade starts with extracellular signals including growth factors, hormones, and neurotransmitters, which act through receptors and ion channels to initiate intracellular signaling that leads to the activation at the MAPKKK (Raf-1 or MOS) level, which leads to the transmission of signals to MEK1, and finally to ERK1/2. The ERK cascade plays an important role in cell proliferation, differentiation, oncogenic transformation, and cell cycle control, as well as in apoptosis and cell survival under certain conditions. Gain-of-function mutations in genes encoding ERK cascade proteins, including MEK1, cause cardiofaciocutaneous (CFC) syndrome, a condition leading to multiple congenital anomalies and mental retardation in patients. MEK1 also plays a role in cell cycle control. Length = 333

>gnl|CDD|143364 cd07859, STKc_TDY_MAPK_plant, Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants

 Score = 40.1 bits (94), Expect = 0.003
 Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 1/64 (1%)

Query: 683 LEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSK-QTQTLATIGY 741
           L  L + H+  + H DLKP N+L + D    I DFG+A++   +   +   T  +AT  Y
Sbjct: 113 LRALKYIHTANVFHRDLKPKNILANADCKLKICDFGLARVAFNDTPTAIFWTDYVATRWY 172

Query: 742 MAPE 745
            APE
Sbjct: 173 RAPE 176

Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activation loop, TEY and TDY. Arabidopsis thaliana contains more TEY-type MAPKs than TDY-type, whereas the reverse is true for Oryza sativa. This subfamily represents the TDY subtype and is composed of Group D plant MAPKs including Arabidopsis thaliana MPK18 (AtMPK18), Oryza sativa Blast- and Wound-induced MAPK1 (OsBWMK1), OsWJUMK1 (Wound- and JA-Uninducible MAPK1), Zea mays MPK6, and the Medicago sativa TDY1 gene product. OsBWMK1 enhances resistance to pathogenic infections. It mediates stress-activated defense responses by activating a transcription factor that affects the expression of stress-related genes. AtMPK18 is involved in microtubule-related functions. Length = 338

>gnl|CDD|173753 cd07864, STKc_CDK12, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

 Score = 39.8 bits (93), Expect = 0.004
 Identities = 31/102 (30%), Positives = 50/102 (49%), Gaps = 4/102 (3%)

Query: 672 HRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSK 731
             ++   +   LE L++ H    +H D+K SN+LL+      ++DFG+A+L + E+    
Sbjct: 115 EDHIKSFMKQLLEGLNYCHKKNFLHRDIKCSNILLNNKGQIKLADFGLARLYNSEES-RP 173

Query: 732 QTQTLATIGYMAPE--YGTKGRVSTRGDVCSFGIISGGKETR 771
            T  + T+ Y  PE   G + R     DV S G I G   T+
Sbjct: 174 YTNKVITLWYRPPELLLGEE-RYGPAIDVWSCGCILGELFTK 214

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely expressed in tissues. It interacts with cyclins L1 and L2, and plays roles in regulating transcription and alternative splicing. Length = 302

>gnl|CDD|173632 cd05051, PTKc_DDR, Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors

 Score = 39.6 bits (93), Expect = 0.004
 Identities = 34/110 (30%), Positives = 53/110 (48%), Gaps = 13/110 (11%)

Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLAT 738
           I+S + YL    S+  +H DL   N L+ ++    I+DFG+++ L   D    Q +    
Sbjct: 139 IASGMRYLE---SLNFVHRDLATRNCLVGKNYTIKIADFGMSRNLYSSDYYRVQGRAPLP 195

Query: 739 IGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGETCTPVRESKYE 788
           I +MA E    G+ +T+ DV +FG+          T+ E  T  RE  YE
Sbjct: 196 IRWMAWESVLLGKFTTKSDVWAFGV----------TLWEILTLCREQPYE 235

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including breast, colon, ovarian, brain, and lung. There is no evidence showing that DDRs act as transforming oncogenes. They are more likely to play a role in the regulation of tumor growth and metastasis. Length = 296

>gnl|CDD|173702 cd05611, STKc_Rim15_like, Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases

 Score = 39.4 bits (92), Expect = 0.004
 Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 9/63 (14%)

Query: 683 LEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYM 742
           +E LH      IIH D+KP N+L+D+     ++DFG    LS     +K  + + T  Y+
Sbjct: 110 VEDLH---QRGIIHRDIKPENLLIDQTGHLKLTDFG----LSRNGLENK--KFVGTPDYL 160

Query: 743 APE 745
           APE
Sbjct: 161 APE 163

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a downstream effector of PKA and regulates entry into stationary phase (G0). Thus, it plays a crucial role in regulating yeast proliferation, differentiation, and aging. Cek1 may facilitate progression of mitotic anaphase. Length = 260

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	823
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	100.0
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	100.0
KOG0615	475	consensus Serine/threonine protein kinase Chk2 and	99.96
KOG0598	357	consensus Ribosomal protein S6 kinase and related	99.96
KOG0593	396	consensus Predicted protein kinase KKIAMRE [Genera	99.96
KOG0591	375	consensus NIMA (never in mitosis)-related G2-speci	99.96
KOG1187	361	consensus Serine/threonine protein kinase [Signal	99.96
KOG0595	429	consensus Serine/threonine-protein kinase involved	99.95
KOG0575	592	consensus Polo-like serine/threonine protein kinas	99.95
KOG0592	604	consensus 3-phosphoinositide-dependent protein kin	99.95
KOG0600	560	consensus Cdc2-related protein kinase [Cell cycle	99.95
KOG0033	355	consensus Ca2+/calmodulin-dependent protein kinase	99.94
KOG0192	362	consensus Tyrosine kinase specific for activated (	99.94
KOG0616	355	consensus cAMP-dependent protein kinase catalytic	99.94
KOG0581	364	consensus Mitogen-activated protein kinase kinase	99.94
KOG0659	318	consensus Cdk activating kinase (CAK)/RNA polymera	99.94
KOG0611	668	consensus Predicted serine/threonine protein kinas	99.94
KOG0588	786	consensus Serine/threonine protein kinase [Cell cy	99.94
KOG0583	370	consensus Serine/threonine protein kinase [Signal	99.93
KOG0597	808	consensus Serine-threonine protein kinase FUSED [G	99.93
KOG0578	550	consensus p21-activated serine/threonine protein k	99.93
KOG0585	576	consensus Ca2+/calmodulin-dependent protein kinase	99.93
KOG0658	364	consensus Glycogen synthase kinase-3 [Carbohydrate	99.93
KOG0582	516	consensus Ste20-like serine/threonine protein kina	99.93
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.92
KOG0663	419	consensus Protein kinase PITSLRE and related kinas	99.92
KOG0660	359	consensus Mitogen-activated protein kinase [Signal	99.92
KOG0193	678	consensus Serine/threonine protein kinase RAF [Sig	99.92
KOG4721	904	consensus Serine/threonine protein kinase, contain	99.92
KOG0599	411	consensus Phosphorylase kinase gamma subunit [Carb	99.91
KOG0605	550	consensus NDR and related serine/threonine kinases	99.91
KOG0694	694	consensus Serine/threonine protein kinase [Signal	99.91
KOG0198	313	consensus MEKK and related serine/threonine protei	99.91
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.91
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.91
KOG0661	538	consensus MAPK related serine/threonine protein ki	99.91
KOG1026	774	consensus Nerve growth factor receptor TRKA and re	99.91
KOG0594	323	consensus Protein kinase PCTAIRE and related kinas	99.91
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.91
KOG3653	534	consensus Transforming growth factor beta/activin	99.91
KOG0201	467	consensus Serine/threonine protein kinase [Signal	99.91
KOG0580	281	consensus Serine/threonine protein kinase [Cell cy	99.91
KOG4236	888	consensus Serine/threonine protein kinase PKC mu/P	99.9
KOG0197	468	consensus Tyrosine kinases [Signal transduction me	99.9
KOG0196	996	consensus Tyrosine kinase, EPH (ephrin) receptor f	99.9
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.9
cd05628	363	STKc_NDR1 Catalytic domain of the Protein Serine/T	99.9
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.9
KOG4717	864	consensus Serine/threonine protein kinase [Signal	99.89
KOG0607	463	consensus MAP kinase-interacting kinase and relate	99.89
cd05629	377	STKc_NDR_like_fungal Catalytic domain of Fungal Nu	99.89
cd05571	323	STKc_PKB Catalytic domain of the Protein Serine/Th	99.89
cd05599	364	STKc_NDR_like Catalytic domain of Nuclear Dbf2-Rel	99.89
KOG0986	591	consensus G protein-coupled receptor kinase [Signa	99.89
cd05625	382	STKc_LATS1 Catalytic domain of the Protein Serine/	99.89
cd05621	370	STKc_ROCK2 Catalytic domain of the Protein Serine/	99.89
cd05631	285	STKc_GRK4 Catalytic domain of the Protein Serine/T	99.89
cd05102	338	PTKc_VEGFR3 Catalytic domain of the Protein Tyrosi	99.89
cd05612	291	STKc_PRKX_like Catalytic domain of PRKX-like Prote	99.89
cd05626	381	STKc_LATS2 Catalytic domain of the Protein Serine/	99.89
KOG4279	1226	consensus Serine/threonine protein kinase [Signal	99.89
cd05593	328	STKc_PKB_gamma Catalytic domain of the Protein Ser	99.88
PTZ00263	329	protein kinase A catalytic subunit; Provisional	99.88
cd05598	376	STKc_LATS Catalytic domain of the Protein Serine/T	99.88
cd05622	371	STKc_ROCK1 Catalytic domain of the Protein Serine/	99.88
cd05627	360	STKc_NDR2 Catalytic domain of the Protein Serine/T	99.88
KOG4250	732	consensus TANK binding protein kinase TBK1 [Signal	99.88
cd05573	350	STKc_ROCK_NDR_like Catalytic domain of ROCK- and N	99.88
PTZ00426	340	cAMP-dependent protein kinase catalytic subunit; P	99.88
cd05585	312	STKc_YPK1_like Catalytic domain of Yeast Protein K	99.88
cd05600	333	STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p-	99.88
PTZ00283	496	serine/threonine protein kinase; Provisional	99.88
KOG0586	596	consensus Serine/threonine protein kinase [General	99.88
KOG2345	302	consensus Serine/threonine protein kinase/TGF-beta	99.88
PTZ00267	478	NIMA-related protein kinase; Provisional	99.88
KOG0690	516	consensus Serine/threonine protein kinase [Signal	99.88
cd05584	323	STKc_p70S6K Catalytic domain of the Protein Serine	99.88
KOG0666	438	consensus Cyclin C-dependent kinase CDK8 [Transcri	99.88
cd05596	370	STKc_ROCK Catalytic domain of the Protein Serine/T	99.88
cd05601	330	STKc_CRIK Catalytic domain of the Protein Serine/T	99.88
cd05595	323	STKc_PKB_beta Catalytic domain of the Protein Seri	99.88
KOG0667	586	consensus Dual-specificity tyrosine-phosphorylatio	99.88
PHA03212	391	serine/threonine kinase US3; Provisional	99.88
KOG0589	426	consensus Serine/threonine protein kinase [General	99.88
KOG0610	459	consensus Putative serine/threonine protein kinase	99.87
cd07859	338	STKc_TDY_MAPK_plant Catalytic domain of the Serine	99.87
KOG0032	382	consensus Ca2+/calmodulin-dependent protein kinase	99.87
KOG2052	513	consensus Activin A type IB receptor, serine/threo	99.87
cd05594	325	STKc_PKB_alpha Catalytic domain of the Protein Ser	99.87
KOG0596	677	consensus Dual specificity; serine/threonine and t	99.87
KOG0983	391	consensus Mitogen-activated protein kinase (MAPK)	99.87
cd05624	331	STKc_MRCK_beta Catalytic domain of the Protein Ser	99.87
cd05597	331	STKc_DMPK_like Catalytic domain of Myotonic Dystro	99.87
cd07874	355	STKc_JNK3 Catalytic domain of the Serine/Threonine	99.87
cd07848	287	STKc_CDKL5 Catalytic domain of the Serine/Threonin	99.87
cd07869	303	STKc_PFTAIRE1 Catalytic domain of the Serine/Threo	99.87
cd05614	332	STKc_MSK2_N N-terminal catalytic domain of the Pro	99.87
PHA02988	283	hypothetical protein; Provisional	99.87
cd07878	343	STKc_p38beta_MAPK11 Catalytic domain of the Serine	99.87
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.87
cd07876	359	STKc_JNK2 Catalytic domain of the Serine/Threonine	99.87
cd05623	332	STKc_MRCK_alpha Catalytic domain of the Protein Se	99.87
KOG1094	807	consensus Discoidin domain receptor DDR1 [Signal t	99.87
cd07871	288	STKc_PCTAIRE3 Catalytic domain of the Serine/Threo	99.87
cd07875	364	STKc_JNK1 Catalytic domain of the Serine/Threonine	99.87
KOG1989	738	consensus ARK protein kinase family [Signal transd	99.87
cd05589	324	STKc_PKN Catalytic domain of the Protein Serine/Th	99.87
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	99.86
cd05108	316	PTKc_EGFR Catalytic domain of the Protein Tyrosine	99.86
cd05604	325	STKc_SGK3 Catalytic domain of the Protein Serine/T	99.86
cd05592	316	STKc_nPKC_theta_delta Catalytic domain of the Prot	99.86
PHA03207	392	serine/threonine kinase US3; Provisional	99.86
cd05603	321	STKc_SGK2 Catalytic domain of the Protein Serine/T	99.86
cd05106	374	PTKc_CSF-1R Catalytic domain of the Protein Tyrosi	99.86
PLN00034	353	mitogen-activated protein kinase kinase; Provision	99.86
cd05591	321	STKc_nPKC_epsilon Catalytic domain of the Protein	99.86
cd05616	323	STKc_cPKC_beta Catalytic domain of the Protein Ser	99.86
cd05587	324	STKc_cPKC Catalytic domain of the Protein Serine/T	99.86
cd05618	329	STKc_aPKC_iota Catalytic domain of the Protein Ser	99.86
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	99.86
KOG0604	400	consensus MAP kinase-activated protein kinase 2 [S	99.86
cd07862	290	STKc_CDK6 Catalytic domain of the Serine/Threonine	99.86
cd05096	304	PTKc_DDR1 Catalytic domain of the Protein Tyrosine	99.86
cd05588	329	STKc_aPKC Catalytic domain of the Protein Serine/T	99.86
KOG0577	948	consensus Serine/threonine protein kinase [Signal	99.86
cd05590	320	STKc_nPKC_eta Catalytic domain of the Protein Seri	99.86
PTZ00036	440	glycogen synthase kinase; Provisional	99.86
cd05054	337	PTKc_VEGFR Catalytic domain of the Protein Tyrosin	99.86
cd07853	372	STKc_NLK Catalytic domain of the Serine/Threonine	99.86
cd05602	325	STKc_SGK1 Catalytic domain of the Protein Serine/T	99.86
cd05575	323	STKc_SGK Catalytic domain of the Protein Serine/Th	99.86
PHA03211	461	serine/threonine kinase US3; Provisional	99.86
cd05617	327	STKc_aPKC_zeta Catalytic domain of the Protein Ser	99.85
cd05620	316	STKc_nPKC_delta Catalytic domain of the Protein Se	99.85
cd05582	318	STKc_RSK_N N-terminal catalytic domain of the Prot	99.85
cd05615	323	STKc_cPKC_alpha Catalytic domain of the Protein Se	99.85
cd06625	263	STKc_MEKK3_like Catalytic domain of MAP/ERK kinase	99.85
cd05048	283	PTKc_Ror Catalytic Domain of the Protein Tyrosine	99.85
cd05104	375	PTKc_Kit Catalytic domain of the Protein Tyrosine	99.85
cd07868	317	STKc_CDK8 Catalytic domain of the Serine/Threonine	99.85
cd05608	280	STKc_GRK1 Catalytic domain of the Protein Serine/T	99.85
cd05619	316	STKc_nPKC_theta Catalytic domain of the Protein Se	99.85
cd06649	331	PKc_MEK2 Catalytic domain of the dual-specificity	99.85
KOG1006	361	consensus Mitogen-activated protein kinase (MAPK)	99.85
cd05093	288	PTKc_TrkB Catalytic domain of the Protein Tyrosine	99.85
cd05605	285	STKc_GRK4_like Catalytic domain of G protein-coupl	99.85
cd06650	333	PKc_MEK1 Catalytic domain of the dual-specificity	99.85
KOG1035	1351	consensus eIF-2alpha kinase GCN2 [Translation, rib	99.85
PTZ00284	467	protein kinase; Provisional	99.85
KOG4645	1509	consensus MAPKKK (MAP kinase kinase kinase) SSK2 a	99.84
cd05586	330	STKc_Sck1_like Catalytic domain of Suppressor of l	99.84
KOG0574	502	consensus STE20-like serine/threonine kinase MST [	99.84
cd05049	280	PTKc_Trk Catalytic domain of the Protein Tyrosine	99.84
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.84
cd05632	285	STKc_GRK5 Catalytic domain of the Protein Serine/T	99.84
cd05111	279	PTK_HER3 Pseudokinase domain of the Protein Tyrosi	99.84
KOG0664	449	consensus Nemo-like MAPK-related serine/threonine	99.84
cd05062	277	PTKc_IGF-1R Catalytic domain of the Protein Tyrosi	99.84
cd05570	318	STKc_PKC Catalytic domain of the Protein Serine/Th	99.84
cd05607	277	STKc_GRK7 Catalytic domain of the Protein Serine/T	99.84
cd05091	283	PTKc_Ror2 Catalytic domain of the Protein Tyrosine	99.84
KOG0696	683	consensus Serine/threonine protein kinase [Signal	99.84
cd05090	283	PTKc_Ror1 Catalytic domain of the Protein Tyrosine	99.84
KOG0984	282	consensus Mitogen-activated protein kinase (MAPK)	99.84
KOG0194	474	consensus Protein tyrosine kinase [Signal transduc	99.84
cd06651	266	STKc_MEKK3 Catalytic domain of the Protein Serine/	99.84
cd05109	279	PTKc_HER2 Catalytic domain of the Protein Tyrosine	99.84
cd05092	280	PTKc_TrkA Catalytic domain of the Protein Tyrosine	99.83
cd07872	309	STKc_PCTAIRE2 Catalytic domain of the Serine/Threo	99.83
cd07863	288	STKc_CDK4 Catalytic domain of the Serine/Threonine	99.83
cd06619	279	PKc_MKK5 Catalytic domain of the dual-specificity	99.83
cd05035	273	PTKc_Axl_like Catalytic Domain of Axl-like Protein	99.83
PHA03210	501	serine/threonine kinase US3; Provisional	99.83
cd05094	291	PTKc_TrkC Catalytic domain of the Protein Tyrosine	99.83
cd05055	302	PTKc_PDGFR Catalytic domain of the Protein Tyrosin	99.83
KOG0614	732	consensus cGMP-dependent protein kinase [Signal tr	99.83
cd07867	317	STKc_CDC2L6 Catalytic domain of Serine/Threonine K	99.83
cd06637	272	STKc_TNIK Catalytic domain of the Protein Serine/T	99.83
KOG0669	376	consensus Cyclin T-dependent kinase CDK9 [Cell cyc	99.83
cd05630	285	STKc_GRK6 Catalytic domain of the Protein Serine/T	99.83
cd05075	272	PTKc_Axl Catalytic domain of the Protein Tyrosine	99.83
cd05068	261	PTKc_Frk_like Catalytic domain of Fyn-related kina	99.83
KOG0662	292	consensus Cyclin-dependent kinase CDK5 [Intracellu	99.83
cd05052	263	PTKc_Abl Catalytic domain of the Protein Tyrosine	99.83
cd05064	266	PTKc_EphR_A10 Catalytic domain of the Protein Tyro	99.83
PHA02882	294	putative serine/threonine kinase; Provisional	99.83
cd05080	283	PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the	99.83
KOG0603	612	consensus Ribosomal protein S6 kinase [Signal tran	99.83
cd05033	266	PTKc_EphR Catalytic domain of Ephrin Receptor Prot	99.83
cd05103	343	PTKc_VEGFR2 Catalytic domain of the Protein Tyrosi	99.83
KOG0584	632	consensus Serine/threonine protein kinase [General	99.83
cd07877	345	STKc_p38alpha_MAPK14 Catalytic domain of the Serin	99.83
cd05072	261	PTKc_Lyn Catalytic domain of the Protein Tyrosine	99.83
cd05105	400	PTKc_PDGFR_alpha Catalytic domain of the Protein T	99.82
cd06624	268	STKc_ASK Catalytic domain of the Protein Serine/Th	99.82
cd06653	264	STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kina	99.82
cd05032	277	PTKc_InsR_like Catalytic domain of Insulin Recepto	99.82
cd05116	257	PTKc_Syk Catalytic domain of the Protein Tyrosine	99.82
cd08529	256	STKc_FA2-like Catalytic domain of the Protein Seri	99.82
KOG1095	1025	consensus Protein tyrosine kinase [Signal transduc	99.82
cd06652	265	STKc_MEKK2 Catalytic domain of the Protein Serine/	99.82
cd05040	257	PTKc_Ack_like Catalytic domain of the Protein Tyro	99.82
cd05148	261	PTKc_Srm_Brk Catalytic domain of the Protein Tyros	99.82
cd05110	303	PTKc_HER4 Catalytic domain of the Protein Tyrosine	99.82
PHA03209	357	serine/threonine kinase US3; Provisional	99.82
cd05084	252	PTKc_Fes Catalytic domain of the Protein Tyrosine	99.82
KOG0579	1187	consensus Ste20-like serine/threonine protein kina	99.82
cd06654	296	STKc_PAK1 Catalytic domain of the Protein Serine/T	99.82
cd08229	267	STKc_Nek7 Catalytic domain of the Protein Serine/T	99.82
cd08219	255	STKc_Nek3 Catalytic domain of the Protein Serine/T	99.82
cd05067	260	PTKc_Lck_Blk Catalytic domain of the Protein Tyros	99.82
cd05097	295	PTKc_DDR_like Catalytic domain of Discoidin Domain	99.82
cd05089	297	PTKc_Tie1 Catalytic domain of the Protein Tyrosine	99.82
cd08228	267	STKc_Nek6 Catalytic domain of the Protein Serine/T	99.82
cd05058	262	PTKc_Met_Ron Catalytic domain of the Protein Tyros	99.82
cd06636	282	STKc_MAP4K4_6 Catalytic domain of the Protein Seri	99.82
cd06643	282	STKc_SLK Catalytic domain of the Protein Serine/Th	99.82
cd05043	280	PTK_Ryk Pseudokinase domain of Ryk (Receptor relat	99.82
cd06645	267	STKc_MAP4K3 Catalytic domain of the Protein Serine	99.82
cd06646	267	STKc_MAP4K5 Catalytic domain of the Protein Serine	99.82
cd05071	262	PTKc_Src Catalytic domain of the Protein Tyrosine	99.82
cd06613	262	STKc_MAP4K3_like Catalytic domain of Mitogen-activ	99.82
cd06628	267	STKc_MAPKKK_Byr2_like Catalytic domain of fungal B	99.82
cd05095	296	PTKc_DDR2 Catalytic domain of the Protein Tyrosine	99.82
cd06609	274	STKc_MST3_like Catalytic domain of Mammalian Ste20	99.82
cd05101	304	PTKc_FGFR2 Catalytic domain of the Protein Tyrosin	99.82
cd06655	296	STKc_PAK2 Catalytic domain of the Protein Serine/T	99.82
cd05051	296	PTKc_DDR Catalytic domain of the Protein Tyrosine	99.81
cd05065	269	PTKc_EphR_B Catalytic domain of the Protein Tyrosi	99.81
cd06659	297	STKc_PAK6 Catalytic domain of the Protein Serine/T	99.81
cd06644	292	STKc_STK10_LOK Catalytic domain of the Protein Ser	99.81
cd05580	290	STKc_PKA Catalytic domain of the Protein Serine/Th	99.81
cd05113	256	PTKc_Btk_Bmx Catalytic domain of the Protein Tyros	99.81
cd05114	256	PTKc_Tec_Rlk Catalytic domain of the Protein Tyros	99.81
cd07849	336	STKc_ERK1_2_like Catalytic domain of Extracellular	99.81
cd05045	290	PTKc_RET Catalytic domain of the Protein Tyrosine	99.81
cd07879	342	STKc_p38delta_MAPK13 Catalytic domain of the Serin	99.81
cd08223	257	STKc_Nek4 Catalytic domain of the Protein Serine/T	99.81
cd05082	256	PTKc_Csk Catalytic domain of the Protein Tyrosine	99.81
cd06656	297	STKc_PAK3 Catalytic domain of the Protein Serine/T	99.81
KOG0608	1034	consensus Warts/lats-like serine threonine kinases	99.81
cd05115	257	PTKc_Zap-70 Catalytic domain of the Protein Tyrosi	99.81
KOG1027	903	consensus Serine/threonine protein kinase and endo	99.81
KOG1025	1177	consensus Epidermal growth factor receptor EGFR an	99.81
cd05081	284	PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of	99.81
cd05074	273	PTKc_Tyro3 Catalytic domain of the Protein Tyrosin	99.81
cd05574	316	STKc_phototropin_like Catalytic domain of Phototro	99.81
PTZ00266	1021	NIMA-related protein kinase; Provisional	99.81
cd07850	353	STKc_JNK Catalytic domain of the Serine/Threonine	99.81
cd06639	291	STKc_myosinIIIB Catalytic domain of the Protein Se	99.81
KOG0668	338	consensus Casein kinase II, alpha subunit [Signal	99.81
cd05053	293	PTKc_FGFR Catalytic domain of the Protein Tyrosine	99.81
cd06658	292	STKc_PAK5 Catalytic domain of the Protein Serine/T	99.81
PF07714	259	Pkinase_Tyr: Protein tyrosine kinase Protein kinas	99.81
cd05036	277	PTKc_ALK_LTK Catalytic domain of the Protein Tyros	99.81
cd05069	260	PTKc_Yes Catalytic domain of the Protein Tyrosine	99.81
cd05061	288	PTKc_InsR Catalytic domain of the Protein Tyrosine	99.81
cd05070	260	PTKc_Fyn_Yrk Catalytic domain of the Protein Tyros	99.81
cd06632	258	STKc_MEKK1_plant Catalytic domain of the Protein S	99.81
KOG0695	593	consensus Serine/threonine protein kinase [Signal	99.81
cd07870	291	STKc_PFTAIRE2 Catalytic domain of the Serine/Threo	99.81
cd07873	301	STKc_PCTAIRE1 Catalytic domain of the Serine/Threo	99.81
cd05057	279	PTKc_EGFR_like Catalytic domain of Epidermal Growt	99.81
cd05042	269	PTKc_Aatyk Catalytic domain of the Protein Tyrosin	99.81
cd05578	258	STKc_Yank1 Catalytic domain of the Protein Serine/	99.81
cd05079	284	PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the	99.81
KOG4278	1157	consensus Protein tyrosine kinase [Signal transduc	99.81
KOG1152	772	consensus Signal transduction serine/threonine kin	99.81
PF00069	260	Pkinase: Protein kinase domain Protein kinase; unc	99.8
KOG0665	369	consensus Jun-N-terminal kinase (JNK) [Signal tran	99.8
cd08221	256	STKc_Nek9 Catalytic domain of the Protein Serine/T	99.8
cd05087	269	PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein	99.8
cd05050	288	PTKc_Musk Catalytic domain of the Protein Tyrosine	99.8
cd05085	250	PTKc_Fer Catalytic domain of the Protein Tyrosine	99.8
cd05056	270	PTKc_FAK Catalytic domain of the Protein Tyrosine	99.8
cd05063	268	PTKc_EphR_A2 Catalytic domain of the Protein Tyros	99.8
cd06642	277	STKc_STK25-YSK1 Catalytic domain of the Protein Se	99.8
cd06626	264	STKc_MEKK4 Catalytic domain of the Protein Serine/	99.8
KOG0199	1039	consensus ACK and related non-receptor tyrosine ki	99.8
cd05073	260	PTKc_Hck Catalytic domain of the Protein Tyrosine	99.8
cd05039	256	PTKc_Csk_like Catalytic domain of C-terminal Src k	99.8
cd05059	256	PTKc_Tec_like Catalytic domain of Tec-like Protein	99.8
cd06615	308	PKc_MEK Catalytic domain of the dual-specificity P	99.8
cd07839	284	STKc_CDK5 Catalytic domain of the Serine/Threonine	99.8
cd05088	303	PTKc_Tie2 Catalytic domain of the Protein Tyrosine	99.8
cd05066	267	PTKc_EphR_A Catalytic domain of the Protein Tyrosi	99.8
cd06638	286	STKc_myosinIIIA Catalytic domain of the Protein Se	99.8
cd06605	265	PKc_MAPKK Catalytic domain of the dual-specificity	99.8
cd05099	314	PTKc_FGFR4 Catalytic domain of the Protein Tyrosin	99.8
cd05609	305	STKc_MAST Catalytic domain of the Protein Serine/T	99.8
cd06630	268	STKc_MEKK1 Catalytic domain of the Protein Serine/	99.8
cd05083	254	PTKc_Chk Catalytic domain of the Protein Tyrosine	99.8
cd06648	285	STKc_PAK_II Catalytic domain of the Protein Serine	99.8
cd06607	307	STKc_TAO Catalytic domain of the Protein Serine/Th	99.8
cd06611	280	STKc_SLK_like Catalytic domain of Ste20-like kinas	99.8
cd05077	262	PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of th	99.8
cd00192	262	PTKc Catalytic domain of Protein Tyrosine Kinases.	99.8
cd05060	257	PTKc_Syk_like Catalytic domain of Spleen Tyrosine	99.8
cd06616	288	PKc_MKK4 Catalytic domain of the dual-specificity	99.8
cd07861	285	STKc_CDK1_euk Catalytic domain of the Serine/Threo	99.8
cd06631	265	STKc_YSK4 Catalytic domain of the Protein Serine/T	99.8
cd06612	256	STKc_MST1_2 Catalytic domain of the Protein Serine	99.8
cd05041	251	PTKc_Fes_like Catalytic domain of Fes-like Protein	99.8
cd06629	272	STKc_MAPKKK_Bck1_like Catalytic domain of fungal B	99.79
cd08224	267	STKc_Nek6_Nek7 Catalytic domain of the Protein Ser	99.79
cd05098	307	PTKc_FGFR1 Catalytic domain of the Protein Tyrosin	99.79
cd05100	334	PTKc_FGFR3 Catalytic domain of the Protein Tyrosin	99.79
cd05107	401	PTKc_PDGFR_beta Catalytic domain of the Protein Ty	99.79
cd06647	293	STKc_PAK_I Catalytic domain of the Protein Serine/	99.79
cd07842	316	STKc_CDK8_like Catalytic domain of Cyclin-Dependen	99.79
cd07833	288	STKc_CDKL Catalytic domain of Cyclin-Dependent pro	99.79
cd06622	286	PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS	99.79
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.79
cd07855	334	STKc_ERK5 Catalytic domain of the Serine/Threonine	99.79
cd07844	291	STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like	99.79
cd08227	327	PK_STRAD_alpha Pseudokinase domain of STE20-relate	99.79
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.79
cd07847	286	STKc_CDKL1_4 Catalytic domain of the Serine/Threon	99.79
cd05038	284	PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the P	99.79
cd06635	317	STKc_TAO1 Catalytic domain of the Protein Serine/T	99.79
cd07846	286	STKc_CDKL2_3 Catalytic domain of the Serine/Threon	99.79
cd08217	265	STKc_Nek2 Catalytic domain of the Protein Serine/T	99.79
cd05034	261	PTKc_Src_like Catalytic domain of Src kinase-like	99.79
KOG4257	974	consensus Focal adhesion tyrosine kinase FAK, cont	99.79
cd08220	256	STKc_Nek8 Catalytic domain of the Protein Serine/T	99.79
cd05046	275	PTK_CCK4 Pseudokinase domain of the Protein Tyrosi	99.79
cd06640	277	STKc_MST4 Catalytic domain of the Protein Serine/T	99.78
cd06610	267	STKc_OSR1_SPAK Catalytic domain of the Protein Ser	99.78
cd08218	256	STKc_Nek1 Catalytic domain of the Protein Serine/T	99.78
cd05572	262	STKc_cGK_PKG Catalytic domain of the Protein Serin	99.78
cd07852	337	STKc_MAPK15 Catalytic domain of the Serine/Threoni	99.78
cd06657	292	STKc_PAK4 Catalytic domain of the Protein Serine/T	99.78
cd06617	283	PKc_MKK3_6 Catalytic domain of the dual-specificit	99.78
KOG0671	415	consensus LAMMER dual specificity kinases [Signal	99.78
cd06621	287	PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek	99.78
cd07860	284	STKc_CDK2_3 Catalytic domain of the Serine/Threoni	99.78
cd07865	310	STKc_CDK9 Catalytic domain of the Serine/Threonine	99.78
cd05613	290	STKc_MSK1_N N-terminal catalytic domain of the Pro	99.78
cd07880	343	STKc_p38gamma_MAPK12 Catalytic domain of the Serin	99.78
cd06623	264	PKc_MAPKK_plant_like Catalytic domain of Plant dua	99.78
smart00219	258	TyrKc Tyrosine kinase, catalytic domain. Phosphotr	99.78
cd06917	277	STKc_NAK1_like Catalytic domain of Fungal Nak1-lik	99.78
cd05037	259	PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the	99.78
cd05086	268	PTKc_Aatyk2 Catalytic domain of the Protein Tyrosi	99.78
cd07856	328	STKc_Sty1_Hog1 Catalytic domain of the Serine/Thre	99.78
cd07845	309	STKc_CDK10 Catalytic domain of the Serine/Threonin	99.77
cd07858	337	STKc_TEY_MAPK_plant Catalytic domain of the Serine	99.77
cd06634	308	STKc_TAO2 Catalytic domain of the Protein Serine/T	99.77
cd07857	332	STKc_MPK1 Catalytic domain of the Serine/Threonine	99.77
cd06608	275	STKc_myosinIII_like Catalytic domain of Class III	99.77
cd07832	286	STKc_CCRK Catalytic domain of the Serine/Threonine	99.77
cd05047	270	PTKc_Tie Catalytic domain of Tie Protein Tyrosine	99.77
cd08528	269	STKc_Nek10 Catalytic domain of the Protein Serine/	99.77
cd05044	269	PTKc_c-ros Catalytic domain of the Protein Tyrosin	99.77
PLN00009	294	cyclin-dependent kinase A; Provisional	99.77
cd07866	311	STKc_BUR1 Catalytic domain of the Serine/Threonine	99.77
cd08216	314	PK_STRAD Pseudokinase domain of STE20-related kina	99.77
cd05078	258	PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain	99.77
cd05579	265	STKc_MAST_like Catalytic domain of Microtubule-ass	99.77
cd05122	253	PKc_STE Catalytic domain of STE family Protein Kin	99.77
cd06618	296	PKc_MKK7 Catalytic domain of the dual-specificity	99.77
cd07834	330	STKc_MAPK Catalytic domain of the Serine/Threonine	99.77
cd06627	254	STKc_Cdc7_like Catalytic domain of Cell division c	99.77
cd06641	277	STKc_MST3 Catalytic domain of the Protein Serine/T	99.77
cd06614	286	STKc_PAK Catalytic domain of the Protein Serine/Th	99.77
cd05577	277	STKc_GRK Catalytic domain of the Protein Serine/Th	99.76
cd06633	313	STKc_TAO3 Catalytic domain of the Protein Serine/T	99.76
cd06620	284	PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr	99.76
cd07841	298	STKc_CDK7 Catalytic domain of the Serine/Threonine	99.76
KOG1151	775	consensus Tousled-like protein kinase [Signal tran	99.76
cd07854	342	STKc_MAPK4_6 Catalytic domain of the Serine/Threon	99.76
cd05076	274	PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of th	99.76
cd08530	256	STKc_CNK2-like Catalytic domain of the Protein Ser	99.76
cd08225	257	STKc_Nek5 Catalytic domain of the Protein Serine/T	99.76
cd07851	343	STKc_p38 Catalytic domain of the Serine/Threonine	99.76
cd07843	293	STKc_CDC2L1 Catalytic domain of the Serine/Threoni	99.76
cd05112	256	PTKc_Itk Catalytic domain of the Protein Tyrosine	99.76
cd08215	258	STKc_Nek Catalytic domain of the Protein Serine/Th	99.75
cd07835	283	STKc_CDK1_like Catalytic domain of Cyclin-Dependen	99.75
cd05581	280	STKc_PDK1 Catalytic domain of the Protein Serine/T	99.75
cd07837	295	STKc_CdkB_plant Catalytic domain of the Serine/Thr	99.75
cd06606	260	STKc_MAPKKK Catalytic domain of the Protein Serine	99.75
cd07836	284	STKc_Pho85 Catalytic domain of the Serine/Threonin	99.75
cd07864	302	STKc_CDK12 Catalytic domain of the Serine/Threonin	99.75
cd05118	283	STKc_CMGC Catalytic domain of CMGC family Serine/T	99.74
cd05583	288	STKc_MSK_N N-terminal catalytic domain of the Prot	99.74
cd07840	287	STKc_CDK9_like Catalytic domain of Cyclin-Dependen	99.74
cd05633	279	STKc_GRK3 Catalytic domain of the Protein Serine/T	99.74
PTZ00024	335	cyclin-dependent protein kinase; Provisional	99.74
cd05606	278	STKc_beta_ARK Catalytic domain of the Protein Seri	99.74
cd07831	282	STKc_MOK Catalytic domain of the Serine/Threonine	99.74
cd08226	328	PK_STRAD_beta Pseudokinase domain of STE20-related	99.73
cd07838	287	STKc_CDK4_6_like Catalytic domain of Cyclin-Depend	99.73
cd07829	282	STKc_CDK_like Catalytic domain of Cyclin-Dependent	99.73
PLN03225	566	Serine/threonine-protein kinase SNT7; Provisional	99.73
cd05123	250	STKc_AGC Catalytic domain of AGC family Protein Se	99.73
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.73
PHA03390	267	pk1 serine/threonine-protein kinase 1; Provisional	99.72
cd05611	260	STKc_Rim15_like Catalytic domain of fungal Rim15-l	99.72
KOG0587	953	consensus Traf2- and Nck-interacting kinase and re	99.72
cd07830	283	STKc_MAK_like Catalytic domain of Male germ cell-A	99.71
cd05576	237	STKc_RPK118_like Catalytic domain of the Protein S	99.71
cd08222	260	STKc_Nek11 Catalytic domain of the Protein Serine/	99.7
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.7
KOG0200	609	consensus Fibroblast/platelet-derived growth facto	99.7
PLN03150	623	hypothetical protein; Provisional	99.7
KOG0670	752	consensus U4/U6-associated splicing factor PRP4 [R	99.68
KOG1345	378	consensus Serine/threonine kinase [Signal transduc	99.68
smart00220	244	S_TKc Serine/Threonine protein kinases, catalytic	99.67
PLN03224	507	probable serine/threonine protein kinase; Provisio	99.67
smart00221	225	STYKc Protein kinase; unclassified specificity. Ph	99.64
KOG1024	563	consensus Receptor-like protein tyrosine kinase RY	99.64
KOG1167	418	consensus Serine/threonine protein kinase of the C	99.62
PLN00181	793	protein SPA1-RELATED; Provisional	99.62
PLN03150	623	hypothetical protein; Provisional	99.61
PRK09188	365	serine/threonine protein kinase; Provisional	99.59
KOG0576	829	consensus Mitogen-activated protein kinase kinase	99.55
smart00750	176	KIND kinase non-catalytic C-lobe domain. It is an	99.54
cd05610	669	STKc_MASTL Catalytic domain of the Protein Serine/	99.52
KOG1290	590	consensus Serine/threonine protein kinase [Signal	99.5
KOG1163	341	consensus Casein kinase (serine/threonine/tyrosine	99.48
cd00180	215	PKc Catalytic domain of Protein Kinases. Protein K	99.45
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.4
KOG1165	449	consensus Casein kinase (serine/threonine/tyrosine	99.4
PRK10359	232	lipopolysaccharide core biosynthesis protein; Prov	99.39
KOG0603	612	consensus Ribosomal protein S6 kinase [Signal tran	99.39
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.38
KOG0590	601	consensus Checkpoint kinase and related serine/thr	99.37
KOG1164	322	consensus Casein kinase (serine/threonine/tyrosine	99.34
KOG0606	1205	consensus Microtubule-associated serine/threonine	99.29
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.28
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.27
COG0515	384	SPS1 Serine/threonine protein kinase [General func	99.24
PRK12274	218	serine/threonine protein kinase; Provisional	99.21
KOG4158	598	consensus BRPK/PTEN-induced protein kinase [Signal	99.19
PF14531	288	Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_	99.16
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.13
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.13
cd05147	190	RIO1_euk RIO kinase family; eukaryotic RIO1, catal	99.09
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	99.07
cd05145	190	RIO1_like RIO kinase family; RIO1, RIO3 and simila	99.05
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	99.04
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.04
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.01
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.99
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.98
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.97
PRK10345	210	hypothetical protein; Provisional	98.96
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.96
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.95
KOG1033	516	consensus eIF-2alpha kinase PEK/EIF2AK3 [Translati	98.92
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.91
KOG1166	974	consensus Mitotic checkpoint serine/threonine prot	98.9
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	98.84
KOG1023	484	consensus Natriuretic peptide receptor, guanylate	98.83
cd05144	198	RIO2_C RIO kinase family; RIO2, C-terminal catalyt	98.83
KOG0590	601	consensus Checkpoint kinase and related serine/thr	98.82
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.82
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.76
smart00090	237	RIO RIO-like kinase.	98.75
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.72
PRK09605	535	bifunctional UGMP family protein/serine/threonine	98.67
PRK01723	239	3-deoxy-D-manno-octulosonic-acid kinase; Reviewed	98.64
cd05610	669	STKc_MASTL Catalytic domain of the Protein Serine/	98.61
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.6
TIGR03724	199	arch_bud32 Kae1-associated kinase Bud32. Members o	98.58
cd05119	187	RIO RIO kinase family, catalytic domain. The RIO k	98.57
PRK14879	211	serine/threonine protein kinase; Provisional	98.56
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.55
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.52
cd05120	155	APH_ChoK_like Aminoglycoside 3'-phosphotransferase	98.38
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.33
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.22
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.19
TIGR01982	437	UbiB 2-polyprenylphenol 6-hydroxylase. This model	98.11
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.02
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.01
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.97
cd05151	170	ChoK Choline Kinase (ChoK). The ChoK subfamily is	97.96
KOG0606	1205	consensus Microtubule-associated serine/threonine	97.9
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	97.9
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.84
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	97.82
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.75
PRK15386	426	type III secretion protein GogB; Provisional	97.74
KOG1243	690	consensus Protein kinase [General function predict	97.66
PRK15386	426	type III secretion protein GogB; Provisional	97.64
KOG0601	524	consensus Cyclin-dependent kinase WEE1 [Cell cycle	97.64
PRK04750	537	ubiB putative ubiquinone biosynthesis protein UbiB	97.59
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.55
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.42
KOG2137	700	consensus Protein kinase [Signal transduction mech	97.28

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=1.2e-93  Score=888.10  Aligned_cols=736  Identities=31%  Similarity=0.508  Sum_probs=507.6

Q ss_pred             hHHHHHHHHHHHHhccCCCccccccccCCCCCCccceeeeeCCCCCcEEEEEcCCCCCccccCcccCCCCCCcEEEccCC
Q 045449            7 ISQHQQALLALKAHISYDHTNLFARNWTSSTSVCIWIGITCDVNSHRVIGLNISSFNLQGTITPQLGNLSSLQTLDLSHN   86 (823)
Q Consensus         7 ~~~~~~aLl~~k~~~~~~~~~~~~~~W~~~~~~c~w~gv~c~~~~~~v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~N   86 (823)
                      .++|++||++||+++. ||.+.+. +|+.+.|||.|.||+|++ +++|+.|||++++++|.+++.+..+++|++|||++|
T Consensus        27 ~~~~~~~l~~~~~~~~-~~~~~~~-~w~~~~~~c~w~gv~c~~-~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n  103 (968)
T PLN00113         27 HAEELELLLSFKSSIN-DPLKYLS-NWNSSADVCLWQGITCNN-SSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNN  103 (968)
T ss_pred             CHHHHHHHHHHHHhCC-CCcccCC-CCCCCCCCCcCcceecCC-CCcEEEEEecCCCccccCChHHhCCCCCCEEECCCC
Confidence            4588999999999984 6777766 998888999999999985 569999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCC-CCCCCCEEECCCCcCcCCCchhhhcCCCCcEEecccccccCccCccccCCCCCCccccccceeeeccc
Q 045449           87 KLSGNIPSSIF-NMHTLKLLDFSDNQLFGSLSSFIFNMSSMTTIDLSINRLSGELPANICKIPSTLSKCKQLEELNLGFN  165 (823)
Q Consensus        87 ~l~g~~p~~~~-~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~p~~~~~l~~L~~L~Ls~N  165 (823)
                      +++|.+|..+. .+++|++|+|++|++++.+|.  +.+++|++|+|++|.+++.+|..+       +++++|++|+|++|
T Consensus       104 ~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~-------~~l~~L~~L~L~~n  174 (968)
T PLN00113        104 QLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDI-------GSFSSLKVLDLGGN  174 (968)
T ss_pred             ccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHH-------hcCCCCCEEECccC
Confidence            99999998765 888999999999988877775  457778888888887777666555       55566666666666


Q ss_pred             eeeccCccccccchhhHHHHHhhcCCCcccCCcccCCcchhhhhccccccccCCccccccCCCCCcEEEccCCcccccCC
Q 045449          166 NLSGAIPKEIGNLTKLKEIISTITNSTVCEIPREIGNLPYLARLALATNNLVGVVPVTIFNMSALKEISLLNNSLSGSLP  245 (823)
Q Consensus       166 ~l~~~~p~~l~~l~~L~~L~~l~~n~~~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~lp  245 (823)
                      .+++.+|..++++++|++|. +..|.+.+.+|..++++++|++|+|++|++++.+|..+.++++|++|++++|.+++.+|
T Consensus       175 ~l~~~~p~~~~~l~~L~~L~-L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p  253 (968)
T PLN00113        175 VLVGKIPNSLTNLTSLEFLT-LASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIP  253 (968)
T ss_pred             cccccCChhhhhCcCCCeee-ccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccC
Confidence            66666666666666666664 55555666666666666666666666666666566666666666666666666655555


Q ss_pred             cccccCCCCccEEEeeccccccccCccccCCCCCCeEEeecccccccCCCccCCCcccCcccccCccccCCCCcc-----
Q 045449          246 SRIDLSLPNVETLNLGINSFSGTIPSSITNSSKLSDLELGENLFSGFIPNTIGNLRNLEFGNIADNYLTSSTPEL-----  320 (823)
Q Consensus       246 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~-----  320 (823)
                      ..+.. +++|++|+|++|++++.+|..+.++++|++|+|++|.+++.+|..+.++++|++|++++|.+++..+..     
T Consensus       254 ~~l~~-l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~  332 (968)
T PLN00113        254 SSLGN-LKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLP  332 (968)
T ss_pred             hhHhC-CCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCC
Confidence            55443 555566666655555555555555555555555555555555555555555555555555555441100     


Q ss_pred             --------------cccccccCCCCceEEEeecCCCCccCCccccccccccceEEecCCcceeccCccccCcccccEEEc
Q 045449          321 --------------SFLSSLTNCKKLKVLIVTGNPLDGILPKSIGNFSLSLETILMANCSISGNIPQVVGNLSNLLVLEL  386 (823)
Q Consensus       321 --------------~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L  386 (823)
                                    ..+..+..+++|+.|++++|.+++.+|.++..+ .+|+.|++++|.+.+.+|..+..+++|+.|++
T Consensus       333 ~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~-~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L  411 (968)
T PLN00113        333 RLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSS-GNLFKLILFSNSLEGEIPKSLGACRSLRRVRL  411 (968)
T ss_pred             CCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCc-CCCCEEECcCCEecccCCHHHhCCCCCCEEEC
Confidence                          023344445555555555555555555555544 45555555566666666666666777777777


Q ss_pred             ccCcCCCCchhcccccCCCCEEEccCCCCCCcchHhhhcCCC-----------------------CCEEEcccCcCcccc
Q 045449          387 GGNNLTGPIPVTFSQLQTLQAFDLTRNKLAGPITDELCHLAR-----------------------LHSLVLQGNKFSGSI  443 (823)
Q Consensus       387 s~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~-----------------------L~~L~Ls~N~l~g~~  443 (823)
                      ++|+++|.+|..|..++.|+.|++++|++++.+|..+..+++                       |+.|+|++|++++.+
T Consensus       412 ~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~  491 (968)
T PLN00113        412 QDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAV  491 (968)
T ss_pred             cCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCcc
Confidence            777777777777777777777777777777766665544444                       445555566666667


Q ss_pred             cccccCCCCCCeEeccCCccccccchhhhccCCCcEEeccccccccccCccccCCCCCcEEEcccCCCCCCCCCccc---
Q 045449          444 PSCLGNLTSVRVLYLGLNIFTSVLSSTIWNLKDILFIDVSSNFLDGPLSLDIGNLKVVIGLDFSRNNLSGDIPITIG---  520 (823)
Q Consensus       444 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~ip~~~~---  520 (823)
                      |..+.++++|+.|+|++|++++.+|..+..+++|++|+|++|.++|.+|..+..++.|+.|||++|+++|.+|..+.   
T Consensus       492 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~  571 (968)
T PLN00113        492 PRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVE  571 (968)
T ss_pred             ChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCc
Confidence            77777888889999999999999999999999999999999999999999999999999999999999999997653   


Q ss_pred             ------------CccCCCCCCCCCCCcccccCCcccCCCCCC-CCCCCCCCCCCCCCccccceeeeeehhHHHHHH--HH
Q 045449          521 ------------EGEIPRGGPFANLTAKSFMGNELLCGLPDL-QVSPCKPNKPNTHKKSRKMLLLVIVLPLSTALI--VV  585 (823)
Q Consensus       521 ------------~g~ip~~~~~~~~~~~~~~~n~~~c~~~~~-~~~~c~~~~~~~~~~~~~~~~~~iv~~~~~~l~--~~  585 (823)
                                  .|.+|..+++.++...++.||+.+|+.+.. ..++|...    .+  ....+++++++++++++  ++
T Consensus       572 ~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~~~~~~~~c~~~----~~--~~~~~~~~~~~~~~~~~~~~~  645 (968)
T PLN00113        572 SLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGDTTSGLPPCKRV----RK--TPSWWFYITCTLGAFLVLALV  645 (968)
T ss_pred             ccCEEeccCCcceeeCCCcchhcccChhhhcCCccccCCccccCCCCCccc----cc--cceeeeehhHHHHHHHHHHHH
Confidence                        578999899999999999999999986532 33455321    11  11122222222111111  22


Q ss_pred             HHHHHhhhhhhhcccCCCCCCCCCCC-----cccccccCHHHHHHHhccCCccceeeccC------------CeEEEEEE
Q 045449          586 VTLTLKWKLIKCWKSRTGPSNDGINS-----PQAIRRFSYHELLRATDRFSENNLIGIGN------------GMEVAVKV  648 (823)
Q Consensus       586 ~~~~~~~~~~r~~k~~~~~~~~~~~~-----~~~~~~~~~~~l~~at~~f~~~~~lg~g~------------~~~vavK~  648 (823)
                      +++++++++++..+.+..+...+...     ....+.++++++..   .|...+++|+|+            +..||||+
T Consensus       646 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~  722 (968)
T PLN00113        646 AFGFVFIRGRNNLELKRVENEDGTWELQFFDSKVSKSITINDILS---SLKEENVISRGKKGASYKGKSIKNGMQFVVKE  722 (968)
T ss_pred             HHHHHHHHhhhcccccccccccccccccccccccchhhhHHHHHh---hCCcccEEccCCCeeEEEEEECCCCcEEEEEE
Confidence            22222222222111111111111100     11123455555544   466778899875            56799998


Q ss_pred             ehHhhHHHHHHHHHHHHHHhhcchhhHHH-------------------------------------HHHHHHHHhhhcC-
Q 045449          649 FHQQYERALKSFEDECEVRKRIRHRNLVK-------------------------------------IISSSLEYLHFGH-  690 (823)
Q Consensus       649 ~~~~~~~~~~~~~~E~~~l~~l~h~niv~-------------------------------------~~~~~l~~L~~~h-  690 (823)
                      +.....    ....|++++++++|||||+                                     ++.+++++|+|+| 
T Consensus       723 ~~~~~~----~~~~~~~~l~~l~HpnIv~~~~~~~~~~~~~lv~Ey~~~g~L~~~l~~l~~~~~~~i~~~ia~~L~yLH~  798 (968)
T PLN00113        723 INDVNS----IPSSEIADMGKLQHPNIVKLIGLCRSEKGAYLIHEYIEGKNLSEVLRNLSWERRRKIAIGIAKALRFLHC  798 (968)
T ss_pred             ccCCcc----ccHHHHHHHhhCCCCCcceEEEEEEcCCCCEEEEeCCCCCcHHHHHhcCCHHHHHHHHHHHHHHHHHhcc
Confidence            864322    2235688999999999998                                     2345555566666 


Q ss_pred             --CCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccCCCccccccceehhhhhhccc
Q 045449          691 --SIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGK  768 (823)
Q Consensus       691 --~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~  768 (823)
                        +++|+|||+||+||+++.++.+++. ||.+......      ....||+.|+|||++.+..|+.++|||||||++||+
T Consensus       799 ~~~~~iiH~dlkp~Nil~~~~~~~~~~-~~~~~~~~~~------~~~~~t~~y~aPE~~~~~~~~~~sDv~S~Gvvl~el  871 (968)
T PLN00113        799 RCSPAVVVGNLSPEKIIIDGKDEPHLR-LSLPGLLCTD------TKCFISSAYVAPETRETKDITEKSDIYGFGLILIEL  871 (968)
T ss_pred             CCCCCeecCCCCHHhEEECCCCceEEE-eccccccccC------CCccccccccCcccccCCCCCcccchhhHHHHHHHH
Confidence              7899999999999999999888876 6665543211      224689999999999999999999999999999999


Q ss_pred             cCCCCCcCC
Q 045449          769 ETRSMTVGE  777 (823)
Q Consensus       769 ~~~~~~~~~  777 (823)
                      ++|+.|++.
T Consensus       872 ~tg~~p~~~  880 (968)
T PLN00113        872 LTGKSPADA  880 (968)
T ss_pred             HhCCCCCCc
Confidence            999999854

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=2.3e-58  Score=572.36  Aligned_cols=450  Identities=31%  Similarity=0.503  Sum_probs=361.9

Q ss_pred             cEEEEEcCCCCCccccCcccCCCCCCcEEEccCCCCCCCCCCCCCCCCCCCEEECCCCcCcCCCchhhhcCCCCcEEecc
Q 045449           53 RVIGLNISSFNLQGTITPQLGNLSSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQLFGSLSSFIFNMSSMTTIDLS  132 (823)
Q Consensus        53 ~v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls  132 (823)
                      +++.|+|++|.+.+.+|..++++++|++|||++|.+.+.+|..|+++++|++|+|++|.+++.+|..++++++|++|+|+
T Consensus       141 ~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~  220 (968)
T PLN00113        141 NLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLG  220 (968)
T ss_pred             CCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECc
Confidence            45556666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             cccccCccCccccCCCCCCccccccceeeeccceeeccCccccccchhhHHHHHhhcCCCcccCCcccCCcchhhhhccc
Q 045449          133 INRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEIGNLTKLKEIISTITNSTVCEIPREIGNLPYLARLALA  212 (823)
Q Consensus       133 ~N~l~~~~p~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~~l~~n~~~~~ip~~l~~l~~L~~L~Ls  212 (823)
                      +|++++.+|..+       +++++|++|+|++|++++.+|..++++++|++|. +..|.+.+.+|..+.++++|++|+|+
T Consensus       221 ~n~l~~~~p~~l-------~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~-L~~n~l~~~~p~~l~~l~~L~~L~Ls  292 (968)
T PLN00113        221 YNNLSGEIPYEI-------GGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLF-LYQNKLSGPIPPSIFSLQKLISLDLS  292 (968)
T ss_pred             CCccCCcCChhH-------hcCCCCCEEECcCceeccccChhHhCCCCCCEEE-CcCCeeeccCchhHhhccCcCEEECc
Confidence            666665555444       6677777777777777777777777777777775 66677777777777777777777777


Q ss_pred             cccccCCccccccCCCCCcEEEccCCcccccCCcccccCCCCccEEEeeccccccccCccccCCCCCCeEEeeccccccc
Q 045449          213 TNNLVGVVPVTIFNMSALKEISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSITNSSKLSDLELGENLFSGF  292 (823)
Q Consensus       213 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~lp~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~  292 (823)
                      +|++.+.+|..+.++++|++|++++|.+++.+|..+.. +++|++|+|++|.+++.+|..++.+++|+.|++++|++++.
T Consensus       293 ~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~-l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~  371 (968)
T PLN00113        293 DNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTS-LPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGE  371 (968)
T ss_pred             CCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhc-CCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEee
Confidence            77777777777777777777777777777777766554 77777777777777777777777777777777777777777


Q ss_pred             CCCccCCCcccCcccccCccccCCCCcccccccccCCCCceEEEeecCCCCccCCccccccccccceEEecCCcceeccC
Q 045449          293 IPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGILPKSIGNFSLSLETILMANCSISGNIP  372 (823)
Q Consensus       293 ~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~p  372 (823)
                      +|..+..+++|+.|++++|++.+.     .+..+..+++|+.|++++|++++.+|..+..+ +.|+.|++++|.+++.+|
T Consensus       372 ~p~~~~~~~~L~~L~l~~n~l~~~-----~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l-~~L~~L~Ls~N~l~~~~~  445 (968)
T PLN00113        372 IPEGLCSSGNLFKLILFSNSLEGE-----IPKSLGACRSLRRVRLQDNSFSGELPSEFTKL-PLVYFLDISNNNLQGRIN  445 (968)
T ss_pred             CChhHhCcCCCCEEECcCCEeccc-----CCHHHhCCCCCCEEECcCCEeeeECChhHhcC-CCCCEEECcCCcccCccC
Confidence            777777777777777777777766     55677888889999999999998888888888 689999999999999888


Q ss_pred             ccccCcccccEEEcccCcCCCCchhcccccCCCCEEEccCCCCCCcchHhhhcCCCCCEEEcccCcCcccccccccCCCC
Q 045449          373 QVVGNLSNLLVLELGGNNLTGPIPVTFSQLQTLQAFDLTRNKLAGPITDELCHLARLHSLVLQGNKFSGSIPSCLGNLTS  452 (823)
Q Consensus       373 ~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~  452 (823)
                      ..+..+++|+.|+|++|++.|.+|..+ ..++|+.|+|++|++++.+|..|.++++|+.|+|++|++++.+|..+.++++
T Consensus       446 ~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  524 (968)
T PLN00113        446 SRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKK  524 (968)
T ss_pred             hhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccC
Confidence            888889999999999999998888765 4588999999999999999999999999999999999999999999999999


Q ss_pred             CCeEeccCCccccccchhhhccCCCcEEeccccccccccCccccCCCCCcEEEcccCCCCCCCCCc
Q 045449          453 VRVLYLGLNIFTSVLSSTIWNLKDILFIDVSSNFLDGPLSLDIGNLKVVIGLDFSRNNLSGDIPIT  518 (823)
Q Consensus       453 L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~ip~~  518 (823)
                      |++|+|++|.+++.+|..+..+++|+.|||++|+++|.+|..+..++.|+.|++++|+++|.||..
T Consensus       525 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~  590 (968)
T PLN00113        525 LVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPST  590 (968)
T ss_pred             CCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCc
Confidence            999999999999999999999999999999999999999999999999999999999999999975

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=3e-44  Score=363.98  Aligned_cols=433  Identities=27%  Similarity=0.421  Sum_probs=342.1

Q ss_pred             EEEEEcCCCCCccccCcccCCCCCCcEEEccCCCCCCCCCCCCCCCCCCCEEECCCCcCcCCCchhhhcCCCCcEEeccc
Q 045449           54 VIGLNISSFNLQGTITPQLGNLSSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQLFGSLSSFIFNMSSMTTIDLSI  133 (823)
Q Consensus        54 v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~  133 (823)
                      ++.|++++|++. ++|++++.+..++.|+.++|+++ .+|..++++.+|+.|+.++|.+. ..|+.++.+..|+.||..+
T Consensus        70 l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~dl~~~~  146 (565)
T KOG0472|consen   70 LTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDLEDLDATN  146 (565)
T ss_pred             eeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcccccee-ecCchHHHHhhhhhhhccc
Confidence            456666666666 55666666666666666666666 66666666666777777777665 4555666666677777777


Q ss_pred             ccccCccCccccCCCCCCccccccceeeeccceeeccCccccccchhhHHHHHhhcCCCcccCCcccCCcchhhhhcccc
Q 045449          134 NRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEIGNLTKLKEIISTITNSTVCEIPREIGNLPYLARLALAT  213 (823)
Q Consensus       134 N~l~~~~p~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~~l~~n~~~~~ip~~l~~l~~L~~L~Ls~  213 (823)
                      |+++ .       +|.++.++.+|..|++.+|++.. .|...-+++.|+++  ....+..+.+|..++.+.+|+.|+|..
T Consensus       147 N~i~-s-------lp~~~~~~~~l~~l~~~~n~l~~-l~~~~i~m~~L~~l--d~~~N~L~tlP~~lg~l~~L~~LyL~~  215 (565)
T KOG0472|consen  147 NQIS-S-------LPEDMVNLSKLSKLDLEGNKLKA-LPENHIAMKRLKHL--DCNSNLLETLPPELGGLESLELLYLRR  215 (565)
T ss_pred             cccc-c-------CchHHHHHHHHHHhhccccchhh-CCHHHHHHHHHHhc--ccchhhhhcCChhhcchhhhHHHHhhh
Confidence            7665 2       34445888899999999999984 44444458888888  456677889999999999999999999


Q ss_pred             ccccCCccccccCCCCCcEEEccCCcccccCCcccccCCCCccEEEeeccccccccCccccCCCCCCeEEeecccccccC
Q 045449          214 NNLVGVVPVTIFNMSALKEISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSITNSSKLSDLELGENLFSGFI  293 (823)
Q Consensus       214 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~lp~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~  293 (823)
                      |+|. ..| .|..++.|++|+++.|+|. .+|......+++|.+|||..|+++ ..|+.++-+.+|+.||+|+|.+++ .
T Consensus       216 Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~-L  290 (565)
T KOG0472|consen  216 NKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDISS-L  290 (565)
T ss_pred             cccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCcccc-C
Confidence            9998 456 8999999999999999998 899999878999999999999998 789999999999999999999995 5


Q ss_pred             CCccCCCcccCcccccCccccCCCCcc------------------------------------cccccccCCCCceEEEe
Q 045449          294 PNTIGNLRNLEFGNIADNYLTSSTPEL------------------------------------SFLSSLTNCKKLKVLIV  337 (823)
Q Consensus       294 p~~~~~l~~L~~L~L~~N~l~~~~~~~------------------------------------~~~~~l~~l~~L~~L~L  337 (823)
                      |.+++++ .|++|-+.+|.++.+..++                                    ........+-+.+.|++
T Consensus       291 p~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~  369 (565)
T KOG0472|consen  291 PYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDV  369 (565)
T ss_pred             Ccccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcc
Confidence            7789999 9999999999876431110                                    00111223456788888


Q ss_pred             ecCCCCccCCccccccc--cccceEEecCCcceeccCccccCcccccE-EEcccCcCCCCchhcccccCCCCEEEccCCC
Q 045449          338 TGNPLDGILPKSIGNFS--LSLETILMANCSISGNIPQVVGNLSNLLV-LELGGNNLTGPIPVTFSQLQTLQAFDLTRNK  414 (823)
Q Consensus       338 s~N~l~~~~p~~~~~~~--~~L~~L~L~~N~l~~~~p~~~~~l~~L~~-L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~  414 (823)
                      ++-+++. +|...+...  .-....+++.|++. .+|..+..++.+.+ +++++|.++ -+|..++.+++|..|+|++|-
T Consensus       370 s~~qlt~-VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~is-fv~~~l~~l~kLt~L~L~NN~  446 (565)
T KOG0472|consen  370 SDKQLTL-VPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKIS-FVPLELSQLQKLTFLDLSNNL  446 (565)
T ss_pred             ccccccc-CCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccc-cchHHHHhhhcceeeecccch
Confidence            8888884 566554431  12678899999998 67887777776654 556666654 888889999999999999998


Q ss_pred             CCCcchHhhhcCCCCCEEEcccCcCcccccccccCCCCCCeEeccCCccccccchhhhccCCCcEEeccccccccccCcc
Q 045449          415 LAGPITDELCHLARLHSLVLQGNKFSGSIPSCLGNLTSVRVLYLGLNIFTSVLSSTIWNLKDILFIDVSSNFLDGPLSLD  494 (823)
Q Consensus       415 l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~~p~~  494 (823)
                      +. .+|..++.+..|+.||+|.|+|. .+|.+...+..++.+-.++|++..+.|+.+.+|.+|..|||.+|.+. .||+.
T Consensus       447 Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~  523 (565)
T KOG0472|consen  447 LN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPI  523 (565)
T ss_pred             hh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChh
Confidence            87 77888999999999999999998 78988888877887777789998888888999999999999999997 78999


Q ss_pred             ccCCCCCcEEEcccCCCC
Q 045449          495 IGNLKVVIGLDFSRNNLS  512 (823)
Q Consensus       495 ~~~l~~L~~L~ls~N~l~  512 (823)
                      +++|++|++|++++|+|.
T Consensus       524 LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  524 LGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             hccccceeEEEecCCccC
Confidence            999999999999999998

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=4.1e-43  Score=355.74  Aligned_cols=451  Identities=27%  Similarity=0.386  Sum_probs=380.3

Q ss_pred             EEEEEcCCCCCccccCcccCCCCCCcEEEccCCCCCCCCCCCCCCCCCCCEEECCCCcCcCCCchhhhcCCCCcEEeccc
Q 045449           54 VIGLNISSFNLQGTITPQLGNLSSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQLFGSLSSFIFNMSSMTTIDLSI  133 (823)
Q Consensus        54 v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~  133 (823)
                      +..|++++|.+. .+.+.+.+|..|.+|++++|+++ ..|++++.+..++.|+.|+|+++ .+|.+++++.+|+.|+.++
T Consensus        47 l~~lils~N~l~-~l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~  123 (565)
T KOG0472|consen   47 LQKLILSHNDLE-VLREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSS  123 (565)
T ss_pred             hhhhhhccCchh-hccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhccc
Confidence            567899999998 56677899999999999999998 88999999999999999999997 7899999999999999999


Q ss_pred             ccccCccCccccCCCCCCccccccceeeeccceeeccCccccccchhhHHHHHhhcCCCcccCCcccCCcchhhhhcccc
Q 045449          134 NRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEIGNLTKLKEIISTITNSTVCEIPREIGNLPYLARLALAT  213 (823)
Q Consensus       134 N~l~~~~p~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~~l~~n~~~~~ip~~l~~l~~L~~L~Ls~  213 (823)
                      |.+. .+|++       ++.+..|+.|+..+|+++ ..|..+.++.+|..+. +.+|.+....|..+. ++.|++||...
T Consensus       124 n~~~-el~~~-------i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~-~~~n~l~~l~~~~i~-m~~L~~ld~~~  192 (565)
T KOG0472|consen  124 NELK-ELPDS-------IGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLD-LEGNKLKALPENHIA-MKRLKHLDCNS  192 (565)
T ss_pred             ccee-ecCch-------HHHHhhhhhhhccccccc-cCchHHHHHHHHHHhh-ccccchhhCCHHHHH-HHHHHhcccch
Confidence            9998 44444       489999999999999998 7899999999999886 777777665555555 99999999999


Q ss_pred             ccccCCccccccCCCCCcEEEccCCcccccCCcccccCCCCccEEEeeccccccccCcccc-CCCCCCeEEeeccccccc
Q 045449          214 NNLVGVVPVTIFNMSALKEISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSIT-NSSKLSDLELGENLFSGF  292 (823)
Q Consensus       214 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~lp~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~  292 (823)
                      |-++ .+|..++.|.+|.-|||.+|++. .+| .+. ++..|.+|+++.|+|+ .+|.+.+ ++++|.+|||.+|+++ .
T Consensus       193 N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~-gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e  266 (565)
T KOG0472|consen  193 NLLE-TLPPELGGLESLELLYLRRNKIR-FLP-EFP-GCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-E  266 (565)
T ss_pred             hhhh-cCChhhcchhhhHHHHhhhcccc-cCC-CCC-ccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-c
Confidence            9988 67889999999999999999998 888 444 4889999999999998 6676665 8999999999999999 6


Q ss_pred             CCCccCCCcccCcccccCccccCCCCcccccccccCCCCceEEEeecCCCCcc---------------------------
Q 045449          293 IPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGI---------------------------  345 (823)
Q Consensus       293 ~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~---------------------------  345 (823)
                      .|+.++-+.+|++||+|+|.+++.      |.+++++ .|+.|.+.+|.+..+                           
T Consensus       267 ~Pde~clLrsL~rLDlSNN~is~L------p~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~  339 (565)
T KOG0472|consen  267 VPDEICLLRSLERLDLSNNDISSL------PYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQ  339 (565)
T ss_pred             CchHHHHhhhhhhhcccCCccccC------Ccccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCC
Confidence            799999999999999999999996      5578999 999999999998642                           


Q ss_pred             ----------CCc-cccc--cccccceEEecCCcceeccCccccCc--ccccEEEcccCcCCCCchhcccccCCCCEE-E
Q 045449          346 ----------LPK-SIGN--FSLSLETILMANCSISGNIPQVVGNL--SNLLVLELGGNNLTGPIPVTFSQLQTLQAF-D  409 (823)
Q Consensus       346 ----------~p~-~~~~--~~~~L~~L~L~~N~l~~~~p~~~~~l--~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L-~  409 (823)
                                .|. .+.+  ...+.+.|+++.-+++.+....|..-  .-.+.++++.|++. ++|..+..++.+.+. +
T Consensus       340 se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~  418 (565)
T KOG0472|consen  340 SEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLV  418 (565)
T ss_pred             CcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHH
Confidence                      000 0100  01357788888888885444444332  23788999999998 889888887777554 4


Q ss_pred             ccCCCCCCcchHhhhcCCCCCEEEcccCcCcccccccccCCCCCCeEeccCCccccccchhhhccCCCcEEecccccccc
Q 045449          410 LTRNKLAGPITDELCHLARLHSLVLQGNKFSGSIPSCLGNLTSVRVLYLGLNIFTSVLSSTIWNLKDILFIDVSSNFLDG  489 (823)
Q Consensus       410 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g  489 (823)
                      +++|.+ +.+|..++.+++|..|+|++|-+. .+|..++.+..|+.||+|.|+|.- +|..+..+..++.+-.++|++..
T Consensus       419 lsnn~i-sfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr~-lP~~~y~lq~lEtllas~nqi~~  495 (565)
T KOG0472|consen  419 LSNNKI-SFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFRM-LPECLYELQTLETLLASNNQIGS  495 (565)
T ss_pred             hhcCcc-ccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheeccccccccc-chHHHhhHHHHHHHHhccccccc
Confidence            555555 588999999999999999999998 789999999999999999999976 89999999999999999999987


Q ss_pred             ccCccccCCCCCcEEEcccCCCCCCCCCcccCccCCCCCCCCCCCcccccCCccc
Q 045449          490 PLSLDIGNLKVVIGLDFSRNNLSGDIPITIGEGEIPRGGPFANLTAKSFMGNELL  544 (823)
Q Consensus       490 ~~p~~~~~l~~L~~L~ls~N~l~g~ip~~~~~g~ip~~~~~~~~~~~~~~~n~~~  544 (823)
                      .-|..+.+|..|..|||.+|.+. .||..+        +.+.++....+.|||+-
T Consensus       496 vd~~~l~nm~nL~tLDL~nNdlq-~IPp~L--------gnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  496 VDPSGLKNMRNLTTLDLQNNDLQ-QIPPIL--------GNMTNLRHLELDGNPFR  541 (565)
T ss_pred             cChHHhhhhhhcceeccCCCchh-hCChhh--------ccccceeEEEecCCccC
Confidence            66667999999999999999998 333333        56788888999999864

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=1.4e-39  Score=343.50  Aligned_cols=372  Identities=22%  Similarity=0.253  Sum_probs=259.1

Q ss_pred             CCEEECCCCcCcCCCchhhhcCCCCcEEecccccccCccCccccCCCCCCccccccceeeeccceeeccCccccccchhh
Q 045449          102 LKLLDFSDNQLFGSLSSFIFNMSSMTTIDLSINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEIGNLTKL  181 (823)
Q Consensus       102 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L  181 (823)
                      -+.||||+|.|+...+..|.++++|+.+.|..|.++ .||.       ..+...+|+.|+|.+|.++..-..++      
T Consensus        80 t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~-------f~~~sghl~~L~L~~N~I~sv~se~L------  145 (873)
T KOG4194|consen   80 TQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPR-------FGHESGHLEKLDLRHNLISSVTSEEL------  145 (873)
T ss_pred             eeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hccc-------ccccccceeEEeeeccccccccHHHH------
Confidence            345777777777777777777777777777777766 3333       22444557777777777663322222      


Q ss_pred             HHHHHhhcCCCcccCCcccCCcchhhhhccccccccCCccccccCCCCCcEEEccCCcccccCCcccccCCCCccEEEee
Q 045449          182 KEIISTITNSTVCEIPREIGNLPYLARLALATNNLVGVVPVTIFNMSALKEISLLNNSLSGSLPSRIDLSLPNVETLNLG  261 (823)
Q Consensus       182 ~~L~~l~~n~~~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~lp~~~~~~l~~L~~L~Ls  261 (823)
                                         ..++.|+.||||.|.|+.+.-.+|..-.++++|+|++|.|+ .+-..-|.++.+|.+|.|+
T Consensus       146 -------------------~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It-~l~~~~F~~lnsL~tlkLs  205 (873)
T KOG4194|consen  146 -------------------SALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRIT-TLETGHFDSLNSLLTLKLS  205 (873)
T ss_pred             -------------------HhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecccccc-ccccccccccchheeeecc
Confidence                               23344555566666665444445555555666666666665 4444444445566666666


Q ss_pred             ccccccccCccccCCCCCCeEEeecccccccCCCccCCCcccCcccccCccccCCCCcccccccccCCCCceEEEeecCC
Q 045449          262 INSFSGTIPSSITNSSKLSDLELGENLFSGFIPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNP  341 (823)
Q Consensus       262 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~l~~L~~L~Ls~N~  341 (823)
                      .|+++...+..|.++++|+.|+|..|+|.-..--.|.+|++|+.|.|..|.++...     ...|..|.+++.|+|+.|+
T Consensus       206 rNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~-----DG~Fy~l~kme~l~L~~N~  280 (873)
T KOG4194|consen  206 RNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLD-----DGAFYGLEKMEHLNLETNR  280 (873)
T ss_pred             cCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCccccc-----Ccceeeecccceeecccch
Confidence            66666444455555666666666666665444455666666666666666666552     2356677777777777777


Q ss_pred             CCccCCccccccccccceEEecCCcceeccCccccCcccccEEEcccCcCCCCchhcccccCCCCEEEccCCCCCCcchH
Q 045449          342 LDGILPKSIGNFSLSLETILMANCSISGNIPQVVGNLSNLLVLELGGNNLTGPIPVTFSQLQTLQAFDLTRNKLAGPITD  421 (823)
Q Consensus       342 l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~  421 (823)
                      ++.....|+.++ .+|+.|+||+|.|..+.++...-+++|.+||||+|+++...+..|..+..|+.|+|++|+++..-..
T Consensus       281 l~~vn~g~lfgL-t~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~  359 (873)
T KOG4194|consen  281 LQAVNEGWLFGL-TSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEG  359 (873)
T ss_pred             hhhhhccccccc-chhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhh
Confidence            777777777777 6788888888888877788888888888888888888877777888888888888888888877677


Q ss_pred             hhhcCCCCCEEEcccCcCcccccc---cccCCCCCCeEeccCCccccccchhhhccCCCcEEeccccccccccCccccCC
Q 045449          422 ELCHLARLHSLVLQGNKFSGSIPS---CLGNLTSVRVLYLGLNIFTSVLSSTIWNLKDILFIDVSSNFLDGPLSLDIGNL  498 (823)
Q Consensus       422 ~~~~l~~L~~L~Ls~N~l~g~~p~---~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l  498 (823)
                      .|..+++|+.|||++|.+++.|-+   .|..+++|+.|+|.+|++..+.-..|.++..|+.|||.+|.|...-|..|..|
T Consensus       360 af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m  439 (873)
T KOG4194|consen  360 AFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM  439 (873)
T ss_pred             HHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc
Confidence            788888888888888888877754   47778888888888888888777888888888999999888888888888888


Q ss_pred             CCCcEEEcccCCCCCC
Q 045449          499 KVVIGLDFSRNNLSGD  514 (823)
Q Consensus       499 ~~L~~L~ls~N~l~g~  514 (823)
                       .|+.|-+..-.|-++
T Consensus       440 -~Lk~Lv~nSssflCD  454 (873)
T KOG4194|consen  440 -ELKELVMNSSSFLCD  454 (873)
T ss_pred             -hhhhhhhcccceEEe
Confidence             788777765554433

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=6.2e-40  Score=346.25  Aligned_cols=370  Identities=24%  Similarity=0.272  Sum_probs=248.4

Q ss_pred             CCcEEEccCCCCCCCCCCCCCCCCCCCEEECCCCcCcCCCchhhhcCCCCcEEecccccccCccCccccCCCCCCccccc
Q 045449           77 SLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQLFGSLSSFIFNMSSMTTIDLSINRLSGELPANICKIPSTLSKCKQ  156 (823)
Q Consensus        77 ~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~p~~~~~l~~  156 (823)
                      .-+.||+++|.++-+.+..|.++++|+.++|.+|.++ .+|...+...+|+.|+|.+|.|+..-.+.+       ..++.
T Consensus        79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L-------~~l~a  150 (873)
T KOG4194|consen   79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEEL-------SALPA  150 (873)
T ss_pred             ceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHH-------HhHhh
Confidence            3466888888887777777778888888888888776 566666666668888888887775444444       66677


Q ss_pred             cceeeeccceeeccCccccccchhhHHHHHhhcCCCcccCCcccCCcchhhhhccccccccCCccccccCCCCCcEEEcc
Q 045449          157 LEELNLGFNNLSGAIPKEIGNLTKLKEIISTITNSTVCEIPREIGNLPYLARLALATNNLVGVVPVTIFNMSALKEISLL  236 (823)
Q Consensus       157 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~~l~~n~~~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls  236 (823)
                      |+.||||.|.++ .+|.                        ..|..-.++++|+|++|.|+....+.|.++.+|..|.|+
T Consensus       151 lrslDLSrN~is-~i~~------------------------~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLs  205 (873)
T KOG4194|consen  151 LRSLDLSRNLIS-EIPK------------------------PSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLS  205 (873)
T ss_pred             hhhhhhhhchhh-cccC------------------------CCCCCCCCceEEeeccccccccccccccccchheeeecc
Confidence            888888888776 3331                        122333456666777777776666666666677777777


Q ss_pred             CCcccccCCcccccCCCCccEEEeeccccccccCccccCCCCCCeEEeecccccccCCCccCCCcccCcccccCccccCC
Q 045449          237 NNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSITNSSKLSDLELGENLFSGFIPNTIGNLRNLEFGNIADNYLTSS  316 (823)
Q Consensus       237 ~N~l~g~lp~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~  316 (823)
                      +|.++ .+|...|..+++|+.|+|..|+|.-.--..|.++++|+.|.|..|.++..-...|..+.++++|+|+.|+++..
T Consensus       206 rNrit-tLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~v  284 (873)
T KOG4194|consen  206 RNRIT-TLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAV  284 (873)
T ss_pred             cCccc-ccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhh
Confidence            77776 66666666677777777777776644455666677777777777777666666677777777777777776665


Q ss_pred             CCcccccccccCCCCceEEEeecCCCCccCCccccccccccceEEecCCcceeccCccccCcccccEEEcccCcCCCCch
Q 045449          317 TPELSFLSSLTNCKKLKVLIVTGNPLDGILPKSIGNFSLSLETILMANCSISGNIPQVVGNLSNLLVLELGGNNLTGPIP  396 (823)
Q Consensus       317 ~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p  396 (823)
                      .     -.++.++++|+.|+||+|.|..+-++.+.-. ++|++|+|++|+|+...+..|..+..|++|+|++|+++..-.
T Consensus       285 n-----~g~lfgLt~L~~L~lS~NaI~rih~d~Wsft-qkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e  358 (873)
T KOG4194|consen  285 N-----EGWLFGLTSLEQLDLSYNAIQRIHIDSWSFT-QKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAE  358 (873)
T ss_pred             h-----cccccccchhhhhccchhhhheeecchhhhc-ccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHh
Confidence            3     2356666777777777777766666555544 567777777777776666777777777777777777765555


Q ss_pred             hcccccCCCCEEEccCCCCCCcchH---hhhcCCCCCEEEcccCcCcccccccccCCCCCCeEeccCCccccccchhhhc
Q 045449          397 VTFSQLQTLQAFDLTRNKLAGPITD---ELCHLARLHSLVLQGNKFSGSIPSCLGNLTSVRVLYLGLNIFTSVLSSTIWN  473 (823)
Q Consensus       397 ~~~~~l~~L~~L~Ls~N~l~~~~p~---~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~  473 (823)
                      ..|..+++|+.|||++|.|++.+-+   .|..|+.|+.|+|.+|++....-.+|.++..|+.|||.+|.+..+-|..|..
T Consensus       359 ~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~  438 (873)
T KOG4194|consen  359 GAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEP  438 (873)
T ss_pred             hHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeeccccccc
Confidence            5666777777777777777665543   3566777777777777777444456777777777777777777777777766


Q ss_pred             cCCCcEEecccccc
Q 045449          474 LKDILFIDVSSNFL  487 (823)
Q Consensus       474 l~~L~~LdLs~N~l  487 (823)
                      + .|+.|-++.-.+
T Consensus       439 m-~Lk~Lv~nSssf  451 (873)
T KOG4194|consen  439 M-ELKELVMNSSSF  451 (873)
T ss_pred             c-hhhhhhhcccce
Confidence            6 666665544433

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=100.00  E-value=7.6e-37  Score=324.24  Aligned_cols=364  Identities=24%  Similarity=0.356  Sum_probs=271.8

Q ss_pred             CCCCEEECCCCcCc-CCCchhhhcCCCCcEEecccccccCccCccccCCCCCCccccccceeeeccceeeccCccccccc
Q 045449          100 HTLKLLDFSDNQLF-GSLSSFIFNMSSMTTIDLSINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEIGNL  178 (823)
Q Consensus       100 ~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l  178 (823)
                      +-.+-.|+|+|.++ +.+|.....+++++.|.|.+.++. .+|+       .++.+.+|++|.+++|++. .+..++..|
T Consensus         7 pFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPe-------EL~~lqkLEHLs~~HN~L~-~vhGELs~L   77 (1255)
T KOG0444|consen    7 PFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPE-------ELSRLQKLEHLSMAHNQLI-SVHGELSDL   77 (1255)
T ss_pred             ceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChH-------HHHHHhhhhhhhhhhhhhH-hhhhhhccc
Confidence            34455666666666 356666666777777777666654 3333       3366777777777777776 455666666


Q ss_pred             hhhHHHHHhhcCCC-cccCCcccCCcchhhhhccccccccCCccccccCCCCCcEEEccCCcccccCCcccccCCCCccE
Q 045449          179 TKLKEIISTITNST-VCEIPREIGNLPYLARLALATNNLVGVVPVTIFNMSALKEISLLNNSLSGSLPSRIDLSLPNVET  257 (823)
Q Consensus       179 ~~L~~L~~l~~n~~-~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~lp~~~~~~l~~L~~  257 (823)
                      +.|+.++ ...|++ ..-||..+..+..|+.||||+|+++ ..|..+..-+++-.|+||+|+|. +||..++..+..|-+
T Consensus        78 p~LRsv~-~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLf  154 (1255)
T KOG0444|consen   78 PRLRSVI-VRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLF  154 (1255)
T ss_pred             hhhHHHh-hhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhh
Confidence            6666665 334433 3457788888888888999999988 56778888888888999999987 888888888888888


Q ss_pred             EEeeccccccccCccccCCCCCCeEEeecccccccCCCccCCCcccCcccccCccccCCCCcccccccccCCCCceEEEe
Q 045449          258 LNLGINSFSGTIPSSITNSSKLSDLELGENLFSGFIPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIV  337 (823)
Q Consensus       258 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~l~~L~~L~L  337 (823)
                      ||||+|++. .+|+.+..+..|++|+||+|.+.-.--..+-.+++|+.|.+++.+-+-.    .+|.++..+.+|..+|+
T Consensus       155 LDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~----N~Ptsld~l~NL~dvDl  229 (1255)
T KOG0444|consen  155 LDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLD----NIPTSLDDLHNLRDVDL  229 (1255)
T ss_pred             hccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhh----cCCCchhhhhhhhhccc
Confidence            999999887 6777888888889999999887765555566677888888887765543    26777888888888888


Q ss_pred             ecCCCCccCCccccccccccceEEecCCcceeccCccccCcccccEEEcccCcCCCCchhcccccCCCCEEEccCCCCCC
Q 045449          338 TGNPLDGILPKSIGNFSLSLETILMANCSISGNIPQVVGNLSNLLVLELGGNNLTGPIPVTFSQLQTLQAFDLTRNKLAG  417 (823)
Q Consensus       338 s~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~  417 (823)
                      |.|.+. .+|..+.++ .+|+.|+||+|+|+. +....+...+|++|+||.|+++ .+|+.+.+++.|+.|.+.+|+++-
T Consensus       230 S~N~Lp-~vPecly~l-~~LrrLNLS~N~ite-L~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~F  305 (1255)
T KOG0444|consen  230 SENNLP-IVPECLYKL-RNLRRLNLSGNKITE-LNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTF  305 (1255)
T ss_pred             cccCCC-cchHHHhhh-hhhheeccCcCceee-eeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccc
Confidence            888887 567777777 678888888888873 3444556677888888888887 678888888888888888887763


Q ss_pred             -cchHhhhcCCCCCEEEcccCcCcccccccccCCCCCCeEeccCCccccccchhhhccCCCcEEeccccc
Q 045449          418 -PITDELCHLARLHSLVLQGNKFSGSIPSCLGNLTSVRVLYLGLNIFTSVLSSTIWNLKDILFIDVSSNF  486 (823)
Q Consensus       418 -~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~  486 (823)
                       -+|..++.+.+|+.+..++|.+. .+|..+..+..|+.|.|+.|++-. .|..+.-++.|.+|||..|.
T Consensus       306 eGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLiT-LPeaIHlL~~l~vLDlreNp  373 (1255)
T KOG0444|consen  306 EGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLIT-LPEAIHLLPDLKVLDLRENP  373 (1255)
T ss_pred             cCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhcccccceee-chhhhhhcCCcceeeccCCc
Confidence             36777788888888888888876 778888888888888888888765 67777778888888888775

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=100.00  E-value=4.1e-36  Score=334.00  Aligned_cols=422  Identities=25%  Similarity=0.287  Sum_probs=280.1

Q ss_pred             EEEEEcCCCCCccccCcccCCCCCCcEEEccCCCCCCCCCCCCCCCCCCCEEECCCCcCcCCCchhhhcCCCCcEEeccc
Q 045449           54 VIGLNISSFNLQGTITPQLGNLSSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQLFGSLSSFIFNMSSMTTIDLSI  133 (823)
Q Consensus        54 v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~  133 (823)
                      +.+||+++|.+. ..|..+..+.+|+.|+++.|.|. ..|.+..++++|++|+|.+|.+. ..|..+..+.+|++||+|.
T Consensus        47 L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~  123 (1081)
T KOG0618|consen   47 LKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSF  123 (1081)
T ss_pred             eEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheeccchhh-cCchhHHhhhcccccccch
Confidence            566666666654 55666666666777777777666 55666666667777777766664 5666666667777777777


Q ss_pred             ccccCccCccccCCCCCCccccccceeeeccc-------------------eeeccCccccccchhhHHHHHhhcCCCcc
Q 045449          134 NRLSGELPANICKIPSTLSKCKQLEELNLGFN-------------------NLSGAIPKEIGNLTKLKEIISTITNSTVC  194 (823)
Q Consensus       134 N~l~~~~p~~~~~~p~~~~~l~~L~~L~Ls~N-------------------~l~~~~p~~l~~l~~L~~L~~l~~n~~~~  194 (823)
                      |++. .+|.-+       ..++.++.+..++|                   .+.+.++.++..++.  .|+ +.+|... 
T Consensus       124 N~f~-~~Pl~i-------~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ld-Lr~N~~~-  191 (1081)
T KOG0618|consen  124 NHFG-PIPLVI-------EVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLD-LRYNEME-  191 (1081)
T ss_pred             hccC-CCchhH-------HhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eee-cccchhh-
Confidence            7664 444333       33333333333333                   333333333333332  111 2222222 


Q ss_pred             cCCcccCCcchhhhhccccccccCCccccccCCCCCcEEEccCCcccccCCcccccCCCCccEEEeeccccccccCcccc
Q 045449          195 EIPREIGNLPYLARLALATNNLVGVVPVTIFNMSALKEISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSIT  274 (823)
Q Consensus       195 ~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~lp~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~  274 (823)
                        -..+.++.+|+.|....|++...    --..++|+.|+.++|.++...+..   ...+|+++|+++|+++ .+|++++
T Consensus       192 --~~dls~~~~l~~l~c~rn~ls~l----~~~g~~l~~L~a~~n~l~~~~~~p---~p~nl~~~dis~n~l~-~lp~wi~  261 (1081)
T KOG0618|consen  192 --VLDLSNLANLEVLHCERNQLSEL----EISGPSLTALYADHNPLTTLDVHP---VPLNLQYLDISHNNLS-NLPEWIG  261 (1081)
T ss_pred             --hhhhhhccchhhhhhhhcccceE----EecCcchheeeeccCcceeecccc---ccccceeeecchhhhh-cchHHHH
Confidence              11233333444444444443311    112346667777777776222221   1457899999999998 4679999


Q ss_pred             CCCCCCeEEeecccccccCCCccCCCcccCcccccCccccCCCCcccccccccCCCCceEEEeecCCCCccCCccccccc
Q 045449          275 NSSKLSDLELGENLFSGFIPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGILPKSIGNFS  354 (823)
Q Consensus       275 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~  354 (823)
                      .+.+|+.|+..+|+|+ .+|..+...++|++|....|.+...+      ..+..++.|+.|+|..|+|....+..+.-..
T Consensus       262 ~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~yip------~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~  334 (1081)
T KOG0618|consen  262 ACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELEYIP------PFLEGLKSLRTLDLQSNNLPSLPDNFLAVLN  334 (1081)
T ss_pred             hcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhhhCC------CcccccceeeeeeehhccccccchHHHhhhh
Confidence            9999999999999996 67888888999999999999998863      4566788999999999999854333333333


Q ss_pred             cccceEEecCCcceeccCccccCcccccEEEcccCcCCCCchhcccccCCCCEEEccCCCCCCcchHhhhcCCCCCEEEc
Q 045449          355 LSLETILMANCSISGNIPQVVGNLSNLLVLELGGNNLTGPIPVTFSQLQTLQAFDLTRNKLAGPITDELCHLARLHSLVL  434 (823)
Q Consensus       355 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  434 (823)
                      .+|..|..+.|.+....-..=...+.|+.|++.+|.|+...-..+.+.++|++|+|++|+|.......+.++..|+.|+|
T Consensus       335 ~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~L  414 (1081)
T KOG0618|consen  335 ASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNL  414 (1081)
T ss_pred             HHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhc
Confidence            34777777777777443222224567888888888888766556788888888888888888555555778888888888


Q ss_pred             ccCcCcccccccccCCCCCCeEeccCCccccccchhhhccCCCcEEeccccccccccCccccCCCCCcEEEcccCC
Q 045449          435 QGNKFSGSIPSCLGNLTSVRVLYLGLNIFTSVLSSTIWNLKDILFIDVSSNFLDGPLSLDIGNLKVVIGLDFSRNN  510 (823)
Q Consensus       435 s~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~ls~N~  510 (823)
                      |+|+|+ .+|.++.++..|++|...+|++.. .| .+..++.|+.+|+|.|+|+...-..-...+.|++|||++|.
T Consensus       415 SGNkL~-~Lp~tva~~~~L~tL~ahsN~l~~-fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  415 SGNKLT-TLPDTVANLGRLHTLRAHSNQLLS-FP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNT  487 (1081)
T ss_pred             ccchhh-hhhHHHHhhhhhHHHhhcCCceee-ch-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCc
Confidence            888888 778888888888888888888876 34 78888888888888888886543333334788888888886

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=100.00  E-value=3.5e-36  Score=319.16  Aligned_cols=369  Identities=25%  Similarity=0.376  Sum_probs=311.9

Q ss_pred             cEEEEEcCCCCCc-cccCcccCCCCCCcEEEccCCCCCCCCCCCCCCCCCCCEEECCCCcCcCCCchhhhcCCCCcEEec
Q 045449           53 RVIGLNISSFNLQ-GTITPQLGNLSSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQLFGSLSSFIFNMSSMTTIDL  131 (823)
Q Consensus        53 ~v~~L~L~~~~l~-g~~~~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  131 (823)
                      -|...|+++|.++ +..|.....++.++.|-|...++. .+|..++.+.+|++|.+++|++. .+-..++.++.|+.+++
T Consensus         8 FVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv~~   85 (1255)
T KOG0444|consen    8 FVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSVIV   85 (1255)
T ss_pred             eeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHHhh
Confidence            4788999999998 468888999999999999999887 88999999999999999999986 45667788899999999


Q ss_pred             ccccccCccCccccCCCCCCccccccceeeeccceeeccCccccccchhhHHHHHhhcCCCcccCCcccCCcchhhhhcc
Q 045449          132 SINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEIGNLTKLKEIISTITNSTVCEIPREIGNLPYLARLAL  211 (823)
Q Consensus       132 s~N~l~~~~p~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~~l~~n~~~~~ip~~l~~l~~L~~L~L  211 (823)
                      ..|++...      .+|..+.++..|..||||+|+++ ..|.                         .+.+-+++-.|+|
T Consensus        86 R~N~LKns------GiP~diF~l~dLt~lDLShNqL~-EvP~-------------------------~LE~AKn~iVLNL  133 (1255)
T KOG0444|consen   86 RDNNLKNS------GIPTDIFRLKDLTILDLSHNQLR-EVPT-------------------------NLEYAKNSIVLNL  133 (1255)
T ss_pred             hccccccC------CCCchhcccccceeeecchhhhh-hcch-------------------------hhhhhcCcEEEEc
Confidence            99998632      24444488899999999999987 4554                         3344456778899


Q ss_pred             ccccccCCccccccCCCCCcEEEccCCcccccCCcccccCCCCccEEEeeccccccccCccccCCCCCCeEEeeccccc-
Q 045449          212 ATNNLVGVVPVTIFNMSALKEISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSITNSSKLSDLELGENLFS-  290 (823)
Q Consensus       212 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~lp~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~-  290 (823)
                      |+|+|..+.-..|.+++.|-.||||+|.+. .+|+.+.. +..|++|+|++|.+....-..+..+++|++|.+|+.+=+ 
T Consensus       134 S~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RR-L~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl  211 (1255)
T KOG0444|consen  134 SYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRR-LSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTL  211 (1255)
T ss_pred             ccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHH-HhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchh
Confidence            999998665566779999999999999998 88888875 889999999999887655556677889999999987543 


Q ss_pred             ccCCCccCCCcccCcccccCccccCCCCcccccccccCCCCceEEEeecCCCCccCCccccccccccceEEecCCcceec
Q 045449          291 GFIPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGILPKSIGNFSLSLETILMANCSISGN  370 (823)
Q Consensus       291 ~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~  370 (823)
                      ..+|.++..+.+|..+|||.|.+...      |..+.++.+|+.|+||+|.|+. +....+.. .+|++|+||+|+++ .
T Consensus       212 ~N~Ptsld~l~NL~dvDlS~N~Lp~v------Pecly~l~~LrrLNLS~N~ite-L~~~~~~W-~~lEtLNlSrNQLt-~  282 (1255)
T KOG0444|consen  212 DNIPTSLDDLHNLRDVDLSENNLPIV------PECLYKLRNLRRLNLSGNKITE-LNMTEGEW-ENLETLNLSRNQLT-V  282 (1255)
T ss_pred             hcCCCchhhhhhhhhccccccCCCcc------hHHHhhhhhhheeccCcCceee-eeccHHHH-hhhhhhccccchhc-c
Confidence            46889999999999999999999874      5678889999999999999984 34444555 68999999999999 7


Q ss_pred             cCccccCcccccEEEcccCcCCC-CchhcccccCCCCEEEccCCCCCCcchHhhhcCCCCCEEEcccCcCcccccccccC
Q 045449          371 IPQVVGNLSNLLVLELGGNNLTG-PIPVTFSQLQTLQAFDLTRNKLAGPITDELCHLARLHSLVLQGNKFSGSIPSCLGN  449 (823)
Q Consensus       371 ~p~~~~~l~~L~~L~Ls~N~l~g-~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~  449 (823)
                      +|++++.++.|+.|.+.+|+++- -||+.++++.+|+++..++|.+. .+|..+|.+..|+.|.|+.|++. ..|+.+.-
T Consensus       283 LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHl  360 (1255)
T KOG0444|consen  283 LPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHL  360 (1255)
T ss_pred             chHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhh
Confidence            89999999999999999999873 38999999999999999999998 88999999999999999999998 78999999


Q ss_pred             CCCCCeEeccCCccccccc
Q 045449          450 LTSVRVLYLGLNIFTSVLS  468 (823)
Q Consensus       450 l~~L~~L~Ls~N~l~~~~p  468 (823)
                      ++.|+.|||..|.=--..|
T Consensus       361 L~~l~vLDlreNpnLVMPP  379 (1255)
T KOG0444|consen  361 LPDLKVLDLRENPNLVMPP  379 (1255)
T ss_pred             cCCcceeeccCCcCccCCC
Confidence            9999999999995333344

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=100.00  E-value=2e-35  Score=328.52  Aligned_cols=442  Identities=29%  Similarity=0.361  Sum_probs=315.6

Q ss_pred             cEEEEEcCCCCCccccCcccCCCCCCcEEEccCCCCCCCCCCCCCCCCCCCEEECCCCcCcCCCchhhhcCCCCcEEecc
Q 045449           53 RVIGLNISSFNLQGTITPQLGNLSSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQLFGSLSSFIFNMSSMTTIDLS  132 (823)
Q Consensus        53 ~v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls  132 (823)
                      +++.|+++.|-+-...-+.+...-+|+.|||++|+++ ..|..+..+.+|+.|+++.|.|. ..|.+..++.+|++|.|.
T Consensus        22 ~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~   99 (1081)
T KOG0618|consen   22 ALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLK   99 (1081)
T ss_pred             HHHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheec
Confidence            4788899888776433333444445999999999997 88999999999999999999997 677999999999999999


Q ss_pred             cccccCccCccccCCCCCCccccccceeeeccceeeccCccccccchhhHHHHHhhcCCCcccCCcccCCcchhhhhccc
Q 045449          133 INRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEIGNLTKLKEIISTITNSTVCEIPREIGNLPYLARLALA  212 (823)
Q Consensus       133 ~N~l~~~~p~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~~l~~n~~~~~ip~~l~~l~~L~~L~Ls  212 (823)
                      .|++. .+|.++       ..+++|++|++++|+|. .+|..+..++.+..+. .++|..+..++..    . ++.++|.
T Consensus       100 ~n~l~-~lP~~~-------~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~-~s~N~~~~~lg~~----~-ik~~~l~  164 (1081)
T KOG0618|consen  100 NNRLQ-SLPASI-------SELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELA-ASNNEKIQRLGQT----S-IKKLDLR  164 (1081)
T ss_pred             cchhh-cCchhH-------HhhhcccccccchhccC-CCchhHHhhhHHHHHh-hhcchhhhhhccc----c-chhhhhh
Confidence            99987 555555       89999999999999997 8999999999888874 5555333222222    1 7778888


Q ss_pred             cccccCCccccccCCCCCcEEEccCCcccccCCcccccCCCCccEEEeeccccccccCccccCCCCCCeEEeeccccccc
Q 045449          213 TNNLVGVVPVTIFNMSALKEISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSITNSSKLSDLELGENLFSGF  292 (823)
Q Consensus       213 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~lp~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~  292 (823)
                      .|.+.+.++..+.+++.  .|+|.+|.+. ...  + ..+++|+.|....|+++...    -..++|+.|+.++|.++..
T Consensus       165 ~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~~d--l-s~~~~l~~l~c~rn~ls~l~----~~g~~l~~L~a~~n~l~~~  234 (1081)
T KOG0618|consen  165 LNVLGGSFLIDIYNLTH--QLDLRYNEME-VLD--L-SNLANLEVLHCERNQLSELE----ISGPSLTALYADHNPLTTL  234 (1081)
T ss_pred             hhhcccchhcchhhhhe--eeecccchhh-hhh--h-hhccchhhhhhhhcccceEE----ecCcchheeeeccCcceee
Confidence            88888888877777766  6888888776 221  1 12556666666666655221    1234555555555555521


Q ss_pred             CCCccCCCcccCcccccCccccCCCCcccccccccCCCCceEEEeecCCCCccCCccccccccccceEEecCCcceeccC
Q 045449          293 IPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGILPKSIGNFSLSLETILMANCSISGNIP  372 (823)
Q Consensus       293 ~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~p  372 (823)
                      .+  -..-.+|+++++++|++++.      |.+++.|.+|+.++...|+|. .+|..+... .+|++|.+.+|.++ -+|
T Consensus       235 ~~--~p~p~nl~~~dis~n~l~~l------p~wi~~~~nle~l~~n~N~l~-~lp~ri~~~-~~L~~l~~~~nel~-yip  303 (1081)
T KOG0618|consen  235 DV--HPVPLNLQYLDISHNNLSNL------PEWIGACANLEALNANHNRLV-ALPLRISRI-TSLVSLSAAYNELE-YIP  303 (1081)
T ss_pred             cc--ccccccceeeecchhhhhcc------hHHHHhcccceEecccchhHH-hhHHHHhhh-hhHHHHHhhhhhhh-hCC
Confidence            11  11123455555555555553      344555555555555555553 344444444 45555555555555 344


Q ss_pred             ccccCcccccEEEcccCcCCCCchhc------------------------c--cccCCCCEEEccCCCCCCcchHhhhcC
Q 045449          373 QVVGNLSNLLVLELGGNNLTGPIPVT------------------------F--SQLQTLQAFDLTRNKLAGPITDELCHL  426 (823)
Q Consensus       373 ~~~~~l~~L~~L~Ls~N~l~g~~p~~------------------------~--~~l~~L~~L~Ls~N~l~~~~p~~~~~l  426 (823)
                      .....++.|++|||..|+|. ..|+.                        +  ...+.|+.|+|.+|.|+...-..+.+.
T Consensus       304 ~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~  382 (1081)
T KOG0618|consen  304 PFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNF  382 (1081)
T ss_pred             Ccccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccc
Confidence            44455555555555555554 22211                        1  224568889999999998877788899


Q ss_pred             CCCCEEEcccCcCcccccccccCCCCCCeEeccCCccccccchhhhccCCCcEEeccccccccccCccccCCCCCcEEEc
Q 045449          427 ARLHSLVLQGNKFSGSIPSCLGNLTSVRVLYLGLNIFTSVLSSTIWNLKDILFIDVSSNFLDGPLSLDIGNLKVVIGLDF  506 (823)
Q Consensus       427 ~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~l  506 (823)
                      ..|+.|+|++|+|.......+.++..|+.|+||+|.++. +|.++..+..|++|-.-+|++. ..| ++.++++|+.+|+
T Consensus       383 ~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~-Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDl  459 (1081)
T KOG0618|consen  383 KHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTT-LPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDL  459 (1081)
T ss_pred             cceeeeeecccccccCCHHHHhchHHhHHHhcccchhhh-hhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEec
Confidence            999999999999985555668899999999999999998 6799999999999999999998 456 8999999999999


Q ss_pred             ccCCCCCCCCCcccCccCCCCCCCCCCCcccccCCccc
Q 045449          507 SRNNLSGDIPITIGEGEIPRGGPFANLTAKSFMGNELL  544 (823)
Q Consensus       507 s~N~l~g~ip~~~~~g~ip~~~~~~~~~~~~~~~n~~~  544 (823)
                      |.|+|+        .+.+|...+..++..+++.||.++
T Consensus       460 S~N~L~--------~~~l~~~~p~p~LkyLdlSGN~~l  489 (1081)
T KOG0618|consen  460 SCNNLS--------EVTLPEALPSPNLKYLDLSGNTRL  489 (1081)
T ss_pred             ccchhh--------hhhhhhhCCCcccceeeccCCccc
Confidence            999998        355666666678888999999864

>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning]

Probab=99.96  E-value=8.2e-31  Score=268.36  Aligned_cols=183  Identities=27%  Similarity=0.412  Sum_probs=141.2

Q ss_pred             ccCCccceeeccC------------CeEEEEEEehHhhHH-------HHHHHHHHHHHHhhcchhhHHH-----------
Q 045449          628 DRFSENNLIGIGN------------GMEVAVKVFHQQYER-------ALKSFEDECEVRKRIRHRNLVK-----------  677 (823)
Q Consensus       628 ~~f~~~~~lg~g~------------~~~vavK~~~~~~~~-------~~~~~~~E~~~l~~l~h~niv~-----------  677 (823)
                      +.|...+.+|.|+            |+.||||++..+.-.       ......+|+++|++++|||||+           
T Consensus       172 d~yii~~~LGsGafg~Vkla~e~~tgk~vAiKIi~krk~~~~s~~~~~~~~v~~EieILkkL~HP~IV~~~d~f~~~ds~  251 (475)
T KOG0615|consen  172 DYYIISKTLGSGAFGLVKLAYEKKTGKQVAIKIINKRKSTGCSRAIAKTRDVQNEIEILKKLSHPNIVRIKDFFEVPDSS  251 (475)
T ss_pred             ceeEeeeeecCCceeEEEEEEEcccCcEEEeeeeehhhcccccccccchhhhHHHHHHHHhcCCCCEEEEeeeeecCCce
Confidence            4556667788875            778999999765411       1123469999999999999998           


Q ss_pred             -----------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCC---CcEEEeecccccccCC
Q 045449          678 -----------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDED---MVAHISDFGIAKLLSG  725 (823)
Q Consensus       678 -----------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~---~~~kl~DfGla~~~~~  725 (823)
                                                   ++.|++.++.|+|++||+||||||+|||+..+   ..+||+|||+|+....
T Consensus       252 YmVlE~v~GGeLfd~vv~nk~l~ed~~K~~f~Qll~avkYLH~~GI~HRDiKPeNILl~~~~e~~llKItDFGlAK~~g~  331 (475)
T KOG0615|consen  252 YMVLEYVEGGELFDKVVANKYLREDLGKLLFKQLLTAVKYLHSQGIIHRDIKPENILLSNDAEDCLLKITDFGLAKVSGE  331 (475)
T ss_pred             EEEEEEecCccHHHHHHhccccccchhHHHHHHHHHHHHHHHHcCcccccCCcceEEeccCCcceEEEecccchhhcccc
Confidence                                         46799999999999999999999999999755   7899999999998753


Q ss_pred             CCccccccccccCCCcCcccccCCCcc---ccccceehhhhhhccccCCCCCcCCCc------ccccccccccCC-cccc
Q 045449          726 EDQLSKQTQTLATIGYMAPEYGTKGRV---STRGDVCSFGIISGGKETRSMTVGETC------TPVRESKYEVHP-ATTT  795 (823)
Q Consensus       726 ~~~~~~~~~~~gt~~y~aPE~~~~~~~---~~~~Dv~S~Gvv~~~~~~~~~~~~~~~------~~~~~~~~~~~~-~~~~  795 (823)
                      .   ..+.+.+|||.|.|||++....+   ..++|+||+|||+|.+++|..||.+..      +++..++|.+.| .+.+
T Consensus       332 ~---sfm~TlCGTpsYvAPEVl~~kg~~~~~~kVDiWSlGcvLfvcLsG~pPFS~~~~~~sl~eQI~~G~y~f~p~~w~~  408 (475)
T KOG0615|consen  332 G---SFMKTLCGTPSYVAPEVLASKGVEYYPSKVDIWSLGCVLFVCLSGYPPFSEEYTDPSLKEQILKGRYAFGPLQWDR  408 (475)
T ss_pred             c---eehhhhcCCccccChhheecCCeecccchheeeeccceEEEEeccCCCcccccCCccHHHHHhcCcccccChhhhh
Confidence            2   34667899999999999876553   458899999999999999999997753      445667776664 3344


Q ss_pred             cccCCCcccccccccccc
Q 045449          796 IMEHPLPRVGEVMDVDRG  813 (823)
Q Consensus       796 ~~~~~~~~~~~~~~~~~~  813 (823)
                      +.++....+..++.+++.
T Consensus       409 Iseea~dlI~~mL~VdP~  426 (475)
T KOG0615|consen  409 ISEEALDLINWMLVVDPE  426 (475)
T ss_pred             hhHHHHHHHHHhhEeCcc
Confidence            444444445555555444

>KOG0598 consensus Ribosomal protein S6 kinase and related proteins [General function prediction only; Signal transduction mechanisms]

Probab=99.96  E-value=6.7e-30  Score=260.43  Aligned_cols=151  Identities=28%  Similarity=0.329  Sum_probs=131.7

Q ss_pred             hccCCccceeeccC------------CeEEEEEEehHhh---HHHHHHHHHHHHHHhhcchhhHHH--------------
Q 045449          627 TDRFSENNLIGIGN------------GMEVAVKVFHQQY---ERALKSFEDECEVRKRIRHRNLVK--------------  677 (823)
Q Consensus       627 t~~f~~~~~lg~g~------------~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~--------------  677 (823)
                      .++|+..++||+|+            ++.+|+|++++..   ....+...+|..++.+++||.||+              
T Consensus        24 ~~dF~~lkviGkG~fGkV~~Vrk~dt~kiYAmKvl~K~~iv~~~e~~~~~~Er~IL~~v~hPFiv~l~ysFQt~~kLylV  103 (357)
T KOG0598|consen   24 PDDFEILKVIGKGSFGKVFQVRKKDTGKIYAMKVLKKKKIVEKKEVRHTKAERNILSKIKHPFIVKLIYSFQTEEKLYLV  103 (357)
T ss_pred             hhheeeeeeeeccCCceEEEEEEcccCceeehhhhhhhHhhhhhhHHHHHHHHHHHHhCCCCcEeeeEEecccCCeEEEE
Confidence            46788899999997            5558888887654   334578899999999999999998              


Q ss_pred             --------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCcccc
Q 045449          678 --------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSK  731 (823)
Q Consensus       678 --------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~  731 (823)
                                                ++|.++.||.|+|+.||||||+||+|||+|.+|+++|+|||+|+.......  .
T Consensus       104 ld~~~GGeLf~hL~~eg~F~E~~arfYlaEi~lAL~~LH~~gIiyRDlKPENILLd~~GHi~LtDFgL~k~~~~~~~--~  181 (357)
T KOG0598|consen  104 LDYLNGGELFYHLQREGRFSEDRARFYLAEIVLALGYLHSKGIIYRDLKPENILLDEQGHIKLTDFGLCKEDLKDGD--A  181 (357)
T ss_pred             EeccCCccHHHHHHhcCCcchhHHHHHHHHHHHHHHHHHhCCeeeccCCHHHeeecCCCcEEEeccccchhcccCCC--c
Confidence                                      478999999999999999999999999999999999999999996443322  2


Q ss_pred             ccccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCCc
Q 045449          732 QTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGETC  779 (823)
Q Consensus       732 ~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~~  779 (823)
                      ..+++||+.|||||++.+..|+..+|+||+||++|+|++|..||....
T Consensus       182 t~tfcGT~eYmAPEil~~~gy~~~vDWWsLGillYeML~G~pPF~~~~  229 (357)
T KOG0598|consen  182 TRTFCGTPEYMAPEILLGKGYDKAVDWWSLGILLYEMLTGKPPFYAED  229 (357)
T ss_pred             cccccCCccccChHHHhcCCCCcccchHhHHHHHHHHhhCCCCCcCcc
Confidence            345799999999999999999999999999999999999999997653

>KOG0593 consensus Predicted protein kinase KKIAMRE [General function prediction only]

Probab=99.96  E-value=2.4e-29  Score=247.57  Aligned_cols=148  Identities=28%  Similarity=0.374  Sum_probs=126.1

Q ss_pred             cCCccceeeccC------------CeEEEEEEehHhh--HHHHHHHHHHHHHHhhcchhhHHH-----------------
Q 045449          629 RFSENNLIGIGN------------GMEVAVKVFHQQY--ERALKSFEDECEVRKRIRHRNLVK-----------------  677 (823)
Q Consensus       629 ~f~~~~~lg~g~------------~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~-----------------  677 (823)
                      .|+.-..+|+|+            |+.||||++.+..  ....+-..||++++++++|+|+|.                 
T Consensus         3 kYE~LgkvGEGSYGvV~KCrnk~TgqIVAIKkF~Esedd~~VkKIAlREIrmLKqLkH~NLVnLiEVFrrkrklhLVFE~   82 (396)
T KOG0593|consen    3 KYEKLGKVGEGSYGVVMKCRNKDTGQIVAIKKFVESEDDPVVKKIALREIRMLKQLKHENLVNLIEVFRRKRKLHLVFEY   82 (396)
T ss_pred             HHhhhhccccCcceEEEEeccCCcccEEEEEeeccCCccHHHHHHHHHHHHHHHhcccchHHHHHHHHHhcceeEEEeee
Confidence            344455677775            7889999997543  344567889999999999999998                 


Q ss_pred             -----------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccc
Q 045449          678 -----------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQ  734 (823)
Q Consensus       678 -----------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~  734 (823)
                                             ++.|++.+++|+|+++++||||||+|||++.++.+||||||+||.+....  ...+.
T Consensus        83 ~dhTvL~eLe~~p~G~~~~~vk~~l~Q~l~ai~~cHk~n~IHRDIKPENILit~~gvvKLCDFGFAR~L~~pg--d~YTD  160 (396)
T KOG0593|consen   83 CDHTVLHELERYPNGVPSELVKKYLYQLLKAIHFCHKNNCIHRDIKPENILITQNGVVKLCDFGFARTLSAPG--DNYTD  160 (396)
T ss_pred             cchHHHHHHHhccCCCCHHHHHHHHHHHHHHhhhhhhcCeecccCChhheEEecCCcEEeccchhhHhhcCCc--chhhh
Confidence                                   36799999999999999999999999999999999999999999987322  23466


Q ss_pred             cccCCCcCcccccCC-CccccccceehhhhhhccccCCCCCcCCC
Q 045449          735 TLATIGYMAPEYGTK-GRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       735 ~~gt~~y~aPE~~~~-~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      .+.|.+|+|||.+.+ ..|+..+||||.||+++||.+|...|.+.
T Consensus       161 YVATRWYRaPELLvGDtqYG~pVDiWAiGCv~aEl~~G~pL~PG~  205 (396)
T KOG0593|consen  161 YVATRWYRAPELLVGDTQYGKPVDIWAIGCVFAELLTGEPLWPGR  205 (396)
T ss_pred             hhhhhhccChhhhcccCcCCCcccchhhhHHHHHHhcCCcCCCCc
Confidence            789999999998887 78999999999999999999999877653

>KOG0591 consensus NIMA (never in mitosis)-related G2-specific serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.96  E-value=7.1e-30  Score=248.76  Aligned_cols=158  Identities=24%  Similarity=0.356  Sum_probs=132.3

Q ss_pred             cCCccceeeccC------------CeEEEEEEehHh--hHHHHHHHHHHHHHHhhcchhhHHH-----------------
Q 045449          629 RFSENNLIGIGN------------GMEVAVKVFHQQ--YERALKSFEDECEVRKRIRHRNLVK-----------------  677 (823)
Q Consensus       629 ~f~~~~~lg~g~------------~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~-----------------  677 (823)
                      +|.+.+.||+|.            |..||.|.++-+  ..+..++...|+.++++++|||||+                 
T Consensus        20 ~y~Il~~IG~GsFg~vykv~~~~~g~l~a~K~i~f~~md~k~rq~~v~Ei~lLkQL~HpNIVqYy~~~f~~~~evlnivm   99 (375)
T KOG0591|consen   20 DYQILKKIGRGSFGEVYKVQCLLDGKLVALKKIQFGMMDAKARQDCVKEISLLKQLNHPNIVQYYAHSFIEDNEVLNIVM   99 (375)
T ss_pred             HHHHHHHHcCCcchheEEeeeccCcchhhhhhcchhhccHHHHHHHHHHHHHHHhcCCchHHHHHHHhhhccchhhHHHH
Confidence            345556777775            566888877632  2566788999999999999999999                 


Q ss_pred             -----------------------------HHHHHHHHhhhcCC--CC--EEeccCCCCCEEeCCCCcEEEeecccccccC
Q 045449          678 -----------------------------IISSSLEYLHFGHS--IP--IIHCDLKPSNVLLDEDMVAHISDFGIAKLLS  724 (823)
Q Consensus       678 -----------------------------~~~~~l~~L~~~h~--~~--ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~  724 (823)
                                                   +++|++.||.++|.  ++  |+||||||.||.++..|.+||.|||++|.+.
T Consensus       100 E~c~~GDLsqmIk~~K~qkr~ipE~~Vwk~f~QL~~AL~~cH~~~~r~~VmHRDIKPaNIFl~~~gvvKLGDfGL~r~l~  179 (375)
T KOG0591|consen  100 ELCDAGDLSQMIKHFKKQKRLIPEKTVWKYFVQLCRALYHCHSKIPRGTVMHRDIKPANIFLTANGVVKLGDFGLGRFLS  179 (375)
T ss_pred             HhhcccCHHHHHHHHHhccccCchHHHHHHHHHHHHHHHHHhccccccceeeccCcchheEEcCCCceeeccchhHhHhc
Confidence                                         36799999999999  66  9999999999999999999999999999986


Q ss_pred             CCCccccccccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCC-----cccccccccc
Q 045449          725 GEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGET-----CTPVRESKYE  788 (823)
Q Consensus       725 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~-----~~~~~~~~~~  788 (823)
                      ....  .....+|||.||+||.+...+|+.|+||||+||++|||+.-..||.+.     +.++.++.+.
T Consensus       180 s~~t--fA~S~VGTPyYMSPE~i~~~~Y~~kSDiWslGCllyEMcaL~~PF~g~n~~~L~~KI~qgd~~  246 (375)
T KOG0591|consen  180 SKTT--FAHSLVGTPYYMSPERIHESGYNFKSDIWSLGCLLYEMCALQSPFYGDNLLSLCKKIEQGDYP  246 (375)
T ss_pred             chhH--HHHhhcCCCcccCHHHHhcCCCCcchhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHcCCCC
Confidence            5433  345689999999999999999999999999999999999999999774     4555566554

>KOG1187 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.96  E-value=2.9e-29  Score=271.65  Aligned_cols=163  Identities=45%  Similarity=0.721  Sum_probs=138.8

Q ss_pred             cccccCHHHHHHHhccCCccceeeccC-----------CeEEEEEEehHhhHHHHHHHHHHHHHHhhcchhhHHHH----
Q 045449          614 AIRRFSYHELLRATDRFSENNLIGIGN-----------GMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVKI----  678 (823)
Q Consensus       614 ~~~~~~~~~l~~at~~f~~~~~lg~g~-----------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~----  678 (823)
                      ..+.|+|.|+.+||++|+..++||+|+           |..||||++........++|..|++++++++|||+|++    
T Consensus        61 ~~~~fs~~el~~AT~~Fs~~~~ig~Ggfg~VYkG~l~~~~~vAVK~~~~~~~~~~~eF~~Ei~~ls~l~H~Nlv~LlGyC  140 (361)
T KOG1187|consen   61 PLRSFSYDELRKATNNFSESNLIGEGGFGTVYKGVLSDGTVVAVKRLSSNSGQGEREFLNEVEILSRLRHPNLVKLLGYC  140 (361)
T ss_pred             CcceeeHHHHHHHHhCCchhcceecCCCeEEEEEEECCCCEEEEEEecCCCCcchhHHHHHHHHHhcCCCcCcccEEEEE
Confidence            577899999999999999999999996           46799998876543214569999999999999999981    


Q ss_pred             ------------------------------------------HHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEee
Q 045449          679 ------------------------------------------ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISD  716 (823)
Q Consensus       679 ------------------------------------------~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~D  716 (823)
                                                                +|++++|||+.+.+.|+||||||+|||+|+++.+||+|
T Consensus       141 ~e~~~~~~LVYEym~nGsL~d~L~~~~~~~L~W~~R~kIa~g~A~gL~yLH~~~~~~iiHrDiKssNILLD~~~~aKlsD  220 (361)
T KOG1187|consen  141 LEGGEHRLLVYEYMPNGSLEDHLHGKKGEPLDWETRLKIALGAARGLAYLHEGCPPPIIHRDIKSSNILLDEDFNAKLSD  220 (361)
T ss_pred             ecCCceEEEEEEccCCCCHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHccCCCCCEecCCCCHHHeeECCCCCEEccC
Confidence                                                      57888888888888999999999999999999999999


Q ss_pred             cccccccCCCCcccccccc-ccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCC
Q 045449          717 FGIAKLLSGEDQLSKQTQT-LATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       717 fGla~~~~~~~~~~~~~~~-~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      ||+|+.......  ..... .||.+|+|||+...+..+.|+||||||||+.|+++|+.+.+..
T Consensus       221 FGLa~~~~~~~~--~~~~~~~gt~gY~~PEy~~~g~lt~KsDVySFGVvllElitgr~~~d~~  281 (361)
T KOG1187|consen  221 FGLAKLGPEGDT--SVSTTVMGTFGYLAPEYASTGKLTEKSDVYSFGVVLLELITGRKAVDQS  281 (361)
T ss_pred             ccCcccCCcccc--ceeeecCCCCccCChhhhccCCcCcccccccchHHHHHHHhCCcccCCC
Confidence            999976543111  11112 7999999999999999999999999999999999999776643

>KOG0595 consensus Serine/threonine-protein kinase involved in autophagy [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=99.95  E-value=2.4e-29  Score=258.28  Aligned_cols=149  Identities=29%  Similarity=0.415  Sum_probs=129.8

Q ss_pred             hccCCccceeeccC------------CeEEEEEEehHh--hHHHHHHHHHHHHHHhhcchhhHHH---------------
Q 045449          627 TDRFSENNLIGIGN------------GMEVAVKVFHQQ--YERALKSFEDECEVRKRIRHRNLVK---------------  677 (823)
Q Consensus       627 t~~f~~~~~lg~g~------------~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~---------------  677 (823)
                      .++|...+.||.|.            +..||||.+...  ..+.++....|+++++.++|||||+               
T Consensus         9 ~~~y~~~~~iG~GsfavVykg~h~~~~~~VAIK~i~~~~l~~k~~e~L~~Ei~iLkel~H~nIV~l~d~~~~~~~i~lVM   88 (429)
T KOG0595|consen    9 VGDYELSREIGSGSFAVVYKGRHKKSGTEVAIKCIAKKKLNKKLVELLLSEIKILKELKHPNIVRLLDCIEDDDFIYLVM   88 (429)
T ss_pred             cccceehhhccCcceEEEEEeEeccCCceEEeeeehhhccCHHHHHHHHHHHHHHHhcCCcceeeEEEEEecCCeEEEEE
Confidence            45666677788875            677999999876  4667788999999999999999998               


Q ss_pred             -------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCC------CcEEEeecccccccCCC
Q 045449          678 -------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDED------MVAHISDFGIAKLLSGE  726 (823)
Q Consensus       678 -------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~------~~~kl~DfGla~~~~~~  726 (823)
                                               ++.|+..+|+++|+.+||||||||+|||++..      -.+||+|||+||.+...
T Consensus        89 EyC~gGDLs~yi~~~~~l~e~t~r~Fm~QLA~alq~L~~~~IiHRDLKPQNiLLs~~~~~~~~~~LKIADFGfAR~L~~~  168 (429)
T KOG0595|consen   89 EYCNGGDLSDYIRRRGRLPEATARHFMQQLASALQFLHENNIIHRDLKPQNILLSTTARNDTSPVLKIADFGFARFLQPG  168 (429)
T ss_pred             EeCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeeeccCCcceEEeccCCCCCCCceEEecccchhhhCCch
Confidence                                     46789999999999999999999999999754      46899999999998644


Q ss_pred             CccccccccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCC
Q 045449          727 DQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       727 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      ..   ..+.+|++-|||||++..+.|+.|+|+||.|+|+|++++|+.||+..
T Consensus       169 ~~---a~tlcGSplYMAPEV~~~~~YdAKADLWSiG~Ilyq~l~g~~Pf~a~  217 (429)
T KOG0595|consen  169 SM---AETLCGSPLYMAPEVIMSQQYDAKADLWSIGTILYQCLTGKPPFDAE  217 (429)
T ss_pred             hH---HHHhhCCccccCHHHHHhccccchhhHHHHHHHHHHHHhCCCCcccc
Confidence            32   34678999999999999999999999999999999999999999843

>KOG0575 consensus Polo-like serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.95  E-value=2.9e-29  Score=270.16  Aligned_cols=162  Identities=28%  Similarity=0.439  Sum_probs=140.5

Q ss_pred             ccCCccceeeccC------------CeEEEEEEehHhh---HHHHHHHHHHHHHHhhcchhhHHH---------------
Q 045449          628 DRFSENNLIGIGN------------GMEVAVKVFHQQY---ERALKSFEDECEVRKRIRHRNLVK---------------  677 (823)
Q Consensus       628 ~~f~~~~~lg~g~------------~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~---------------  677 (823)
                      .+|...+++|+|+            |..||+|++.+..   ....+...+||++.+.|+|||||+               
T Consensus        18 ~~Y~~g~~LGkGgFA~cYe~~~~~tge~~A~KvVpk~~l~k~~~reKv~~EIeIHr~L~HpnIV~f~~~FEDs~nVYivL   97 (592)
T KOG0575|consen   18 KRYKRGRFLGKGGFARCYEARDLDTGEVVAVKVVPKKLLKKPKQREKVLNEIEIHRSLKHPNIVQFYHFFEDSNNVYIVL   97 (592)
T ss_pred             ceeeeeeeeccCcceEEEEEEEcCCCcEEEEEEeehHHhcCcchHHHHHHHHHHHHhcCCCcEEeeeeEeecCCceEEEE
Confidence            5688889999997            7889999998643   455678999999999999999999               


Q ss_pred             -------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccc
Q 045449          678 -------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQ  732 (823)
Q Consensus       678 -------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~  732 (823)
                                               ++.|++++|.|+|+.+|+|||||..|++++++.++||+|||+|..+..++.  ..
T Consensus        98 ELC~~~sL~el~Krrk~ltEpEary~l~QIv~GlkYLH~~~IiHRDLKLGNlfL~~~~~VKIgDFGLAt~le~~~E--rk  175 (592)
T KOG0575|consen   98 ELCHRGSLMELLKRRKPLTEPEARYFLRQIVEGLKYLHSLGIIHRDLKLGNLFLNENMNVKIGDFGLATQLEYDGE--RK  175 (592)
T ss_pred             EecCCccHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHhcCceecccchhheeecCcCcEEecccceeeeecCccc--cc
Confidence                                     467999999999999999999999999999999999999999998864432  23


Q ss_pred             cccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCC-----cccccccccccCC
Q 045449          733 TQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGET-----CTPVRESKYEVHP  791 (823)
Q Consensus       733 ~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~-----~~~~~~~~~~~~~  791 (823)
                      .+.+|||.|.|||++.+...+..+||||+|||+|-+++|+.||+..     +..+....|.++.
T Consensus       176 ~TlCGTPNYIAPEVl~k~gHsfEvDiWSlGcvmYtLL~G~PPFetk~vkety~~Ik~~~Y~~P~  239 (592)
T KOG0575|consen  176 KTLCGTPNYIAPEVLNKSGHSFEVDIWSLGCVMYTLLVGRPPFETKTVKETYNKIKLNEYSMPS  239 (592)
T ss_pred             ceecCCCcccChhHhccCCCCCchhhhhhhhHHHhhhhCCCCcccchHHHHHHHHHhcCccccc
Confidence            4679999999999999999999999999999999999999999764     4556666665543

>KOG0592 consensus 3-phosphoinositide-dependent protein kinase (PDK1) [Signal transduction mechanisms]

Probab=99.95  E-value=1.8e-29  Score=267.03  Aligned_cols=169  Identities=29%  Similarity=0.440  Sum_probs=139.5

Q ss_pred             HHhccCCccceeeccC------------CeEEEEEEehHhh---HHHHHHHHHHHHHHhhc-chhhHHH-----------
Q 045449          625 RATDRFSENNLIGIGN------------GMEVAVKVFHQQY---ERALKSFEDECEVRKRI-RHRNLVK-----------  677 (823)
Q Consensus       625 ~at~~f~~~~~lg~g~------------~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l-~h~niv~-----------  677 (823)
                      +...+|...+++|+|.            ++.||||++.+..   ++.++...+|-++|.+| .||.|++           
T Consensus        70 k~~~DF~Fg~~lGeGSYStV~~A~~~~t~keYAiKVl~K~~Iike~KvkYV~~Ek~~l~~L~~hPgivkLy~TFQD~~sL  149 (604)
T KOG0592|consen   70 KTPNDFKFGKILGEGSYSTVVLAREKATGKEYAIKVLDKRYIIKEKKVKYVTREKEALTQLSGHPGIVKLYFTFQDEESL  149 (604)
T ss_pred             CChhhcchhheeccccceeEEEeeecCCCceeeHhhhhHHHHHhhcccchhhHHHHHHHHhhCCCCeEEEEEEeecccce
Confidence            3345666677777775            6789999998765   34456677899999999 8999998           


Q ss_pred             -----------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCc
Q 045449          678 -----------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQ  728 (823)
Q Consensus       678 -----------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~  728 (823)
                                                   ++|+++.+|+|+|++|||||||||+|||+|+|+++||+|||-|+.+.+...
T Consensus       150 YFvLe~A~nGdll~~i~K~Gsfde~caR~YAAeIldAleylH~~GIIHRDlKPENILLd~dmhikITDFGsAK~l~~~~~  229 (604)
T KOG0592|consen  150 YFVLEYAPNGDLLDLIKKYGSFDETCARFYAAEILDALEYLHSNGIIHRDLKPENILLDKDGHIKITDFGSAKILSPSQK  229 (604)
T ss_pred             EEEEEecCCCcHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCceeccCChhheeEcCCCcEEEeeccccccCChhhc
Confidence                                         478999999999999999999999999999999999999999998764322


Q ss_pred             c---------ccc--cccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCCc-----ccccccccccCCc
Q 045449          729 L---------SKQ--TQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGETC-----TPVRESKYEVHPA  792 (823)
Q Consensus       729 ~---------~~~--~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~  792 (823)
                      .         ...  ..++||..|.+||++.....+..+|+|+|||++|+|+.|..||.+..     ..++.-.|++++.
T Consensus       230 ~~~~~~~~~~a~s~~~SFVGTAeYVSPElL~~~~~~~~sDiWAlGCilyQmlaG~PPFra~NeyliFqkI~~l~y~fp~~  309 (604)
T KOG0592|consen  230 SQENPVDPNQASSRRSSFVGTAEYVSPELLNDSPAGPSSDLWALGCILYQMLAGQPPFRAANEYLIFQKIQALDYEFPEG  309 (604)
T ss_pred             cccCccCcccccCcccceeeeecccCHHHhcCCCCCcccchHHHHHHHHHHhcCCCCCccccHHHHHHHHHHhcccCCCC
Confidence            1         112  56899999999999999999999999999999999999999998753     4455555665554


Q ss_pred             c
Q 045449          793 T  793 (823)
Q Consensus       793 ~  793 (823)
                      .
T Consensus       310 f  310 (604)
T KOG0592|consen  310 F  310 (604)
T ss_pred             C
Confidence            3

>KOG0600 consensus Cdc2-related protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.95  E-value=1.8e-28  Score=257.44  Aligned_cols=137  Identities=28%  Similarity=0.346  Sum_probs=121.3

Q ss_pred             CeEEEEEEehHhh--HHHHHHHHHHHHHHhhcchhhHHH-----------------------------------------
Q 045449          641 GMEVAVKVFHQQY--ERALKSFEDECEVRKRIRHRNLVK-----------------------------------------  677 (823)
Q Consensus       641 ~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~-----------------------------------------  677 (823)
                      |..||+|+++.+.  +....-..+||.||+++.||||++                                         
T Consensus       142 gkivALKKvr~d~~~~~~~~t~~REI~ILr~l~HpNIikL~eivt~~~~~siYlVFeYMdhDL~GLl~~p~vkft~~qIK  221 (560)
T KOG0600|consen  142 GKIVALKKVRFDNEKEGFPITAIREIKILRRLDHPNIIKLEEIVTSKLSGSIYLVFEYMDHDLSGLLSSPGVKFTEPQIK  221 (560)
T ss_pred             CcEEEEEEeecccCCCcchHHHHHHHHHHHhcCCCcccceeeEEEecCCceEEEEEecccchhhhhhcCCCcccChHHHH
Confidence            6789999997654  455567789999999999999999                                         


Q ss_pred             -HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccCCC-ccccc
Q 045449          678 -IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKG-RVSTR  755 (823)
Q Consensus       678 -~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~  755 (823)
                       ++.|++++|+|||.+||+|||||.+|||+|.+|.+||+|||+|+++..... ...+..+-|.+|+|||++.+. .|+..
T Consensus       222 c~mkQLl~Gl~~cH~~gvlHRDIK~SNiLidn~G~LKiaDFGLAr~y~~~~~-~~~T~rVvTLWYRpPELLLG~t~Yg~a  300 (560)
T KOG0600|consen  222 CYMKQLLEGLEYCHSRGVLHRDIKGSNILIDNNGVLKIADFGLARFYTPSGS-APYTSRVVTLWYRPPELLLGATSYGTA  300 (560)
T ss_pred             HHHHHHHHHHHHHhhcCeeeccccccceEEcCCCCEEeccccceeeccCCCC-cccccceEEeeccChHHhcCCcccccc
Confidence             467999999999999999999999999999999999999999998765543 235677899999999988775 59999


Q ss_pred             cceehhhhhhccccCCCCCcCCC
Q 045449          756 GDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       756 ~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      +|+||.|||++||..|+..+++-
T Consensus       301 VDlWS~GCIl~El~~gkPI~~G~  323 (560)
T KOG0600|consen  301 VDLWSVGCILAELFLGKPILQGR  323 (560)
T ss_pred             eeehhhhHHHHHHHcCCCCcCCc
Confidence            99999999999999999988764

>KOG0033 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=99.94  E-value=3.3e-29  Score=239.23  Aligned_cols=184  Identities=25%  Similarity=0.394  Sum_probs=150.0

Q ss_pred             ccCCccceeeccC------------CeEEEEEEehHhh--HHHHHHHHHHHHHHhhcchhhHHH----------------
Q 045449          628 DRFSENNLIGIGN------------GMEVAVKVFHQQY--ERALKSFEDECEVRKRIRHRNLVK----------------  677 (823)
Q Consensus       628 ~~f~~~~~lg~g~------------~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~----------------  677 (823)
                      +.|+..+.||+|.            |+.+|+|++....  ....++..+|+++-+.++|||||+                
T Consensus        11 d~y~l~e~igkG~FSvVrRc~~~~tg~~fa~kiin~~k~~~~~~e~l~rEarIC~~LqHP~IvrL~~ti~~~~~~ylvFe   90 (355)
T KOG0033|consen   11 DNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLVFD   90 (355)
T ss_pred             hhhhHHHHHccCchHHHHHHHhccchHHHHHHHhhhhhhccccHHHHHHHHHHHHhcCCCcEeehhhhhcccceeEEEEe
Confidence            4445556666664            6778888886443  345678999999999999999998                


Q ss_pred             ------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeC---CCCcEEEeecccccccCCCCccc
Q 045449          678 ------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLD---EDMVAHISDFGIAKLLSGEDQLS  730 (823)
Q Consensus       678 ------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~---~~~~~kl~DfGla~~~~~~~~~~  730 (823)
                                              ++.|++++|.|+|.++|||||+||+|+++.   ....+|++|||+|..+...   .
T Consensus        91 ~m~G~dl~~eIV~R~~ySEa~aSH~~rQiLeal~yCH~n~IvHRDvkP~nllLASK~~~A~vKL~~FGvAi~l~~g---~  167 (355)
T KOG0033|consen   91 LVTGGELFEDIVAREFYSEADASHCIQQILEALAYCHSNGIVHRDLKPENLLLASKAKGAAVKLADFGLAIEVNDG---E  167 (355)
T ss_pred             cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCceeccCChhheeeeeccCCCceeecccceEEEeCCc---c
Confidence                                    257999999999999999999999999995   3457899999999988632   2


Q ss_pred             cccccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCC-----CcccccccccccCC-cccccccCCCccc
Q 045449          731 KQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGE-----TCTPVRESKYEVHP-ATTTIMEHPLPRV  804 (823)
Q Consensus       731 ~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~-----~~~~~~~~~~~~~~-~~~~~~~~~~~~~  804 (823)
                      .....+|||+|||||++...+|+..+|||+.|||+|-++.|..||.+     .++++..+.|++++ .+..+.+.....+
T Consensus       168 ~~~G~~GtP~fmaPEvvrkdpy~kpvDiW~cGViLfiLL~G~~PF~~~~~~rlye~I~~g~yd~~~~~w~~is~~Ak~Lv  247 (355)
T KOG0033|consen  168 AWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDEDQHRLYEQIKAGAYDYPSPEWDTVTPEAKSLI  247 (355)
T ss_pred             ccccccCCCcccCHHHhhcCCCCCcchhhhhhHHHHHHHhCCCCCCCccHHHHHHHHhccccCCCCcccCcCCHHHHHHH
Confidence            34568899999999999999999999999999999999999999876     36778888898886 5566666666677


Q ss_pred             cccccccccc
Q 045449          805 GEVMDVDRGK  814 (823)
Q Consensus       805 ~~~~~~~~~~  814 (823)
                      +.++.+++.+
T Consensus       248 rrML~~dP~k  257 (355)
T KOG0033|consen  248 RRMLTVNPKK  257 (355)
T ss_pred             HHHhccChhh
Confidence            7777776655

>KOG0192 consensus Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs [Signal transduction mechanisms]

Probab=99.94  E-value=5.9e-28  Score=259.39  Aligned_cols=138  Identities=31%  Similarity=0.431  Sum_probs=116.9

Q ss_pred             CeE-EEEEEehHhh--HHHHHHHHHHHHHHhhcchhhHHH----------------------------------------
Q 045449          641 GME-VAVKVFHQQY--ERALKSFEDECEVRKRIRHRNLVK----------------------------------------  677 (823)
Q Consensus       641 ~~~-vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~----------------------------------------  677 (823)
                      |.. ||||++....  ....++|.+|+.++.+++|||||+                                        
T Consensus        64 g~~~vavK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~f~G~~~~~~~~~~iVtEy~~~GsL~~~l~~~~~~~l~~~~  143 (362)
T KOG0192|consen   64 GTDVVAVKIISDPDFDDESRKAFRREASLLSRLRHPNIVQFYGACTSPPGSLCIVTEYMPGGSLSVLLHKKRKRKLPLKV  143 (362)
T ss_pred             CceeEEEEEecchhcChHHHHHHHHHHHHHHhCCCCCeeeEEEEEcCCCCceEEEEEeCCCCcHHHHHhhcccCCCCHHH
Confidence            455 9999997554  222679999999999999999999                                        


Q ss_pred             ---HHHHHHHHhhhcCCCC-EEeccCCCCCEEeCCCC-cEEEeecccccccCCCCccccccccccCCCcCcccccC--CC
Q 045449          678 ---IISSSLEYLHFGHSIP-IIHCDLKPSNVLLDEDM-VAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGT--KG  750 (823)
Q Consensus       678 ---~~~~~l~~L~~~h~~~-ivHrdlk~~NiLl~~~~-~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~--~~  750 (823)
                         ++.+++.+|.|+|+.+ |||||+||+|||++.++ ++||+|||+++......  ...+...||+.|||||++.  ..
T Consensus       144 ~l~~aldiArGm~YLH~~~~iIHrDLK~~NiLv~~~~~~~KI~DFGlsr~~~~~~--~~~~~~~GT~~wMAPEv~~~~~~  221 (362)
T KOG0192|consen  144 RLRIALDIARGMEYLHSEGPIIHRDLKSDNILVDLKGKTLKIADFGLSREKVISK--TSMTSVAGTYRWMAPEVLRGEKS  221 (362)
T ss_pred             HHHHHHHHHHHHHHHhcCCCeeecccChhhEEEcCCCCEEEECCCccceeecccc--ccccCCCCCccccChhhhcCCCC
Confidence               2446777888889999 99999999999999997 99999999998765322  2234468999999999999  56


Q ss_pred             ccccccceehhhhhhccccCCCCCcCCCcc
Q 045449          751 RVSTRGDVCSFGIISGGKETRSMTVGETCT  780 (823)
Q Consensus       751 ~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~~~  780 (823)
                      .|+.|+|||||||++||+.+++.||.+...
T Consensus       222 ~~~~K~DvySFgIvlWEl~t~~~Pf~~~~~  251 (362)
T KOG0192|consen  222 PYTEKSDVYSFGIVLWELLTGEIPFEDLAP  251 (362)
T ss_pred             cCCccchhhhHHHHHHHHHHCCCCCCCCCH
Confidence            899999999999999999999999988754

>KOG0616 consensus cAMP-dependent protein kinase catalytic subunit (PKA) [Signal transduction mechanisms]

Probab=99.94  E-value=2.6e-28  Score=240.04  Aligned_cols=160  Identities=28%  Similarity=0.335  Sum_probs=135.5

Q ss_pred             ccCCccceeeccC------------CeEEEEEEehHhh---HHHHHHHHHHHHHHhhcchhhHHH---------------
Q 045449          628 DRFSENNLIGIGN------------GMEVAVKVFHQQY---ERALKSFEDECEVRKRIRHRNLVK---------------  677 (823)
Q Consensus       628 ~~f~~~~~lg~g~------------~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~---------------  677 (823)
                      ++|+..+.+|.|+            |..+|+|++..+.   .+.++....|..+++.+.||.+++               
T Consensus        44 ~dfe~~~tlGtGSFGrV~LVr~k~~g~yYAmKvL~k~~vVklKQveH~~nEk~vL~~v~~PFlv~l~~t~~d~~~lymvm  123 (355)
T KOG0616|consen   44 QDFERLKTLGTGSFGRVHLVREKHSGNYYAMKVLDKQKVVKLKQVEHTHNEKRVLKAVSHPFLVKLYGTFKDNSNLYMVM  123 (355)
T ss_pred             hhhhheeeeccCccceEEEEEEccCCceeehhhcCHHHHHHHHHHHHHhhHHHHHhhccCceeEEEEEeeccCCeEEEEE
Confidence            3455556777775            5669999997664   344567889999999999999998               


Q ss_pred             -------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccc
Q 045449          678 -------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQ  732 (823)
Q Consensus       678 -------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~  732 (823)
                                               ++||++.||+|+|+.+|++||+||+|||+|.+|++||+|||+|+.+...     .
T Consensus       124 eyv~GGElFS~Lrk~~rF~e~~arFYAAeivlAleylH~~~iiYRDLKPENiLlD~~G~iKitDFGFAK~v~~r-----T  198 (355)
T KOG0616|consen  124 EYVPGGELFSYLRKSGRFSEPHARFYAAEIVLALEYLHSLDIIYRDLKPENLLLDQNGHIKITDFGFAKRVSGR-----T  198 (355)
T ss_pred             eccCCccHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHhcCeeeccCChHHeeeccCCcEEEEeccceEEecCc-----E
Confidence                                     4789999999999999999999999999999999999999999987543     3


Q ss_pred             cccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCC-----cccccccccccCCc
Q 045449          733 TQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGET-----CTPVRESKYEVHPA  792 (823)
Q Consensus       733 ~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~  792 (823)
                      .+.+|||.|+|||++...+|+..+|.|||||+.|||+.|..||...     ++++..+++.+++.
T Consensus       199 ~TlCGTPeYLAPEii~sk~ynkavDWWalGVLIYEMlaG~pPF~~~~~~~iY~KI~~~~v~fP~~  263 (355)
T KOG0616|consen  199 WTLCGTPEYLAPEIIQSKGYNKAVDWWALGVLIYEMLAGYPPFYDDNPIQIYEKILEGKVKFPSY  263 (355)
T ss_pred             EEecCCccccChHHhhcCCCCcchhHHHHHHHHHHHHcCCCCCcCCChHHHHHHHHhCcccCCcc
Confidence            4578999999999999999999999999999999999999999764     45566666655543

>KOG0581 consensus Mitogen-activated protein kinase kinase (MAP2K) [Signal transduction mechanisms]

Probab=99.94  E-value=1.2e-27  Score=243.95  Aligned_cols=151  Identities=27%  Similarity=0.357  Sum_probs=127.4

Q ss_pred             ccCHHHHHHHhccCCccceeeccC------------CeEEEEEEehHhh-HHHHHHHHHHHHHHhhcchhhHHH------
Q 045449          617 RFSYHELLRATDRFSENNLIGIGN------------GMEVAVKVFHQQY-ERALKSFEDECEVRKRIRHRNLVK------  677 (823)
Q Consensus       617 ~~~~~~l~~at~~f~~~~~lg~g~------------~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~------  677 (823)
                      .++..|+.+.       +.||.|.            ++.+|+|++.... ....++..+|++++++.+||+||+      
T Consensus        75 ~i~~~dle~~-------~~lG~G~gG~V~kv~Hk~t~~i~AlK~I~~~~~~~~~~Qi~rEl~il~~~~spyIV~~ygaF~  147 (364)
T KOG0581|consen   75 GISLSDLERL-------GVLGSGNGGTVYKVRHKPTGKIYALKVILLNIDPALQKQILRELEILRSCQSPYIVGFYGAFY  147 (364)
T ss_pred             ccCHHHhhhh-------hhcccCCCcEEEEEEEcCCCeEEEEEeecccCCHHHHHHHHHHHHHHhhCCCCCeeeEeEEEE
Confidence            3566666654       6788875            4558999995443 455678999999999999999998      


Q ss_pred             -----------------------------------HHHHHHHHhhhcC-CCCEEeccCCCCCEEeCCCCcEEEeeccccc
Q 045449          678 -----------------------------------IISSSLEYLHFGH-SIPIIHCDLKPSNVLLDEDMVAHISDFGIAK  721 (823)
Q Consensus       678 -----------------------------------~~~~~l~~L~~~h-~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~  721 (823)
                                                         ++.+++.+|.|+| +++||||||||+|||+...|.+||||||+++
T Consensus       148 ~~~~~isI~mEYMDgGSLd~~~k~~g~i~E~~L~~ia~~VL~GL~YLh~~~~IIHRDIKPsNlLvNskGeVKicDFGVS~  227 (364)
T KOG0581|consen  148 SNGEEISICMEYMDGGSLDDILKRVGRIPEPVLGKIARAVLRGLSYLHEERKIIHRDIKPSNLLVNSKGEVKICDFGVSG  227 (364)
T ss_pred             eCCceEEeehhhcCCCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhccCeeeccCCHHHeeeccCCCEEeccccccH
Confidence                                               2346777788888 4999999999999999999999999999999


Q ss_pred             ccCCCCccccccccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCC
Q 045449          722 LLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       722 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      .+...    ...+++||..|||||.+.+..|+.++||||||+.+.|+.+|+.|+...
T Consensus       228 ~lvnS----~a~tfvGT~~YMsPERi~g~~Ys~~sDIWSLGLsllE~a~GrfP~~~~  280 (364)
T KOG0581|consen  228 ILVNS----IANTFVGTSAYMSPERISGESYSVKSDIWSLGLSLLELAIGRFPYPPP  280 (364)
T ss_pred             Hhhhh----hcccccccccccChhhhcCCcCCcccceecccHHHHHHhhCCCCCCCc
Confidence            87644    345689999999999999999999999999999999999999998664

>KOG0659 consensus Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, kinase subunit CDK7 [Cell cycle control, cell division, chromosome partitioning; Transcription; Replication, recombination and repair]

Probab=99.94  E-value=1e-27  Score=232.40  Aligned_cols=183  Identities=25%  Similarity=0.329  Sum_probs=138.5

Q ss_pred             ccCCccceeeccC------------CeEEEEEEehHhhH--HHHHHHHHHHHHHhhcchhhHHHH---------------
Q 045449          628 DRFSENNLIGIGN------------GMEVAVKVFHQQYE--RALKSFEDECEVRKRIRHRNLVKI---------------  678 (823)
Q Consensus       628 ~~f~~~~~lg~g~------------~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~niv~~---------------  678 (823)
                      ++|...+++|+|.            |+.||||.++....  .......||+..++.++|+||+.+               
T Consensus         2 ~rY~~~~~lGEG~~gvVyka~d~~t~~~VAIKKIkl~~~kdGi~~talREIK~Lqel~h~nIi~LiD~F~~~~~l~lVfE   81 (318)
T KOG0659|consen    2 DRYEKLEKLGEGTYGVVYKARDTETGKRVAIKKIKLGNAKDGINRTALREIKLLQELKHPNIIELIDVFPHKSNLSLVFE   81 (318)
T ss_pred             chhhhhhhhcCcceEEEEEEEecCCCcEEEEEEeeccccccCccHHHHHHHHHHHHccCcchhhhhhhccCCCceEEEEE
Confidence            3556667778775            77899999975532  223578899999999999999993               


Q ss_pred             -------------------------HHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCcccccc
Q 045449          679 -------------------------ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQT  733 (823)
Q Consensus       679 -------------------------~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~  733 (823)
                                               +.+.+.+++|+|+..|+|||+||.|+|++.+|.+||+|||+|+.+......  .+
T Consensus        82 fm~tdLe~vIkd~~i~l~pa~iK~y~~m~LkGl~y~H~~~IlHRDlKPnNLLis~~g~lKiADFGLAr~f~~p~~~--~~  159 (318)
T KOG0659|consen   82 FMPTDLEVVIKDKNIILSPADIKSYMLMTLKGLAYCHSKWILHRDLKPNNLLISSDGQLKIADFGLARFFGSPNRI--QT  159 (318)
T ss_pred             eccccHHHHhcccccccCHHHHHHHHHHHHHHHHHHHhhhhhcccCCccceEEcCCCcEEeecccchhccCCCCcc--cc
Confidence                                     457889999999999999999999999999999999999999998755442  33


Q ss_pred             ccccCCCcCcccccCCC-ccccccceehhhhhhccccCCCCCcCCCcccccccccccCCcccccccCCCccccccccccc
Q 045449          734 QTLATIGYMAPEYGTKG-RVSTRGDVCSFGIISGGKETRSMTVGETCTPVRESKYEVHPATTTIMEHPLPRVGEVMDVDR  812 (823)
Q Consensus       734 ~~~gt~~y~aPE~~~~~-~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  812 (823)
                      ..+-|.+|+|||.+.+. .|+..+|+||.|||++|++-+...|.+..+- .+-.. .........+..||.+.++.++..
T Consensus       160 ~~V~TRWYRAPELLfGsr~Yg~~VDmWavGCI~AELllr~P~fpG~sDi-dQL~~-If~~LGTP~~~~WP~~~~lpdY~~  237 (318)
T KOG0659|consen  160 HQVVTRWYRAPELLFGSRQYGTGVDMWAVGCIFAELLLRVPFFPGDSDI-DQLSK-IFRALGTPTPDQWPEMTSLPDYVK  237 (318)
T ss_pred             cceeeeeccChHHhccchhcCCcchhhhHHHHHHHHHccCCCCCCCchH-HHHHH-HHHHcCCCCcccCccccccccHHH
Confidence            44789999999988775 5999999999999999999998777654222 11111 111223334566677666666554


Q ss_pred             cc
Q 045449          813 GK  814 (823)
Q Consensus       813 ~~  814 (823)
                      -+
T Consensus       238 ~~  239 (318)
T KOG0659|consen  238 IQ  239 (318)
T ss_pred             Hh
Confidence            43

>KOG0611 consensus Predicted serine/threonine protein kinase [General function prediction only]

Probab=99.94  E-value=1.4e-27  Score=242.70  Aligned_cols=168  Identities=21%  Similarity=0.324  Sum_probs=142.8

Q ss_pred             ccccccCHHHHHHHhccCCccceeeccCCeEEEEEEehHhh---HHHHHHHHHHHHHHhhcchhhHHH------------
Q 045449          613 QAIRRFSYHELLRATDRFSENNLIGIGNGMEVAVKVFHQQY---ERALKSFEDECEVRKRIRHRNLVK------------  677 (823)
Q Consensus       613 ~~~~~~~~~~l~~at~~f~~~~~lg~g~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~------------  677 (823)
                      +.+...||..+..|++++.         |+.||||.++++.   ++..-.+++|++||+.++||||+.            
T Consensus        59 etLGkGTYGKVk~A~e~~s---------gR~VAiKsIrKdkIkdeqDlvhIRREIeIMSsLNHPhII~IyEVFENkdKIv  129 (668)
T KOG0611|consen   59 ETLGKGTYGKVKLAYEHKS---------GREVAIKSIRKDKIKDEQDLVHIRREIEIMSSLNHPHIIQIYEVFENKDKIV  129 (668)
T ss_pred             HHhcCCcccceeehhhccC---------CcEeehhhhhhhhcccHHHHHHHHHHHHHHhhcCCCceeehhhhhcCCceEE
Confidence            3456678888888887776         7899999998765   445567889999999999999998            


Q ss_pred             ----------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCcc
Q 045449          678 ----------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQL  729 (823)
Q Consensus       678 ----------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~  729 (823)
                                                  ++.|++.++||||..+|||||+|.+|||+|+++.+||+|||++..+....  
T Consensus       130 ivMEYaS~GeLYDYiSer~~LsErEaRhfFRQIvSAVhYCHknrVvHRDLKLENILLD~N~NiKIADFGLSNly~~~k--  207 (668)
T KOG0611|consen  130 IVMEYASGGELYDYISERGSLSEREARHFFRQIVSAVHYCHKNRVVHRDLKLENILLDQNNNIKIADFGLSNLYADKK--  207 (668)
T ss_pred             EEEEecCCccHHHHHHHhccccHHHHHHHHHHHHHHHHHHhhccceecccchhheeecCCCCeeeeccchhhhhcccc--
Confidence                                        47899999999999999999999999999999999999999998875443  


Q ss_pred             ccccccccCCCcCcccccCCCcc-ccccceehhhhhhccccCCCCCcCCCc-----ccccccccccCCc
Q 045449          730 SKQTQTLATIGYMAPEYGTKGRV-STRGDVCSFGIISGGKETRSMTVGETC-----TPVRESKYEVHPA  792 (823)
Q Consensus       730 ~~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~S~Gvv~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~  792 (823)
                       ...+++|+|-|++||++.+.+| ++.+|-||+||++|-+.+|.+||++..     .++..+.|..++.
T Consensus       208 -fLqTFCGSPLYASPEIvNG~PY~GPEVDsWsLGvLLYtLVyGtMPFDG~Dhk~lvrQIs~GaYrEP~~  275 (668)
T KOG0611|consen  208 -FLQTFCGSPLYASPEIVNGTPYKGPEVDSWSLGVLLYTLVYGTMPFDGRDHKRLVRQISRGAYREPET  275 (668)
T ss_pred             -HHHHhcCCcccCCccccCCCCCCCCccchhhHHHHHHHHhhcccccCCchHHHHHHHhhcccccCCCC
Confidence             2456899999999999999998 788999999999999999999998853     4455566655544

>KOG0588 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.94  E-value=1.2e-27  Score=258.15  Aligned_cols=168  Identities=26%  Similarity=0.345  Sum_probs=138.9

Q ss_pred             CeEEEEEEehHhh---HHHHHHHHHHHHHHhhcchhhHHH----------------------------------------
Q 045449          641 GMEVAVKVFHQQY---ERALKSFEDECEVRKRIRHRNLVK----------------------------------------  677 (823)
Q Consensus       641 ~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~----------------------------------------  677 (823)
                      |+.+|||++....   ......+.+|+.+|+-+.|||+++                                        
T Consensus        37 GqlaaiKii~k~~~~s~s~~~~IerEIviMkLi~HpnVl~LydVwe~~~~lylvlEyv~gGELFdylv~kG~l~e~eaa~  116 (786)
T KOG0588|consen   37 GQLAAIKIIPKRSELSSSQPAGIEREIVIMKLIEHPNVLRLYDVWENKQHLYLVLEYVPGGELFDYLVRKGPLPEREAAH  116 (786)
T ss_pred             cceeEEEeeccccccccccccchhhhhHHHHHhcCCCeeeeeeeeccCceEEEEEEecCCchhHHHHHhhCCCCCHHHHH
Confidence            7889999997653   233467899999999999999998                                        


Q ss_pred             HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccCCCcc-cccc
Q 045449          678 IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRV-STRG  756 (823)
Q Consensus       678 ~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~  756 (823)
                      ++.|++.++.|||..+|+|||+||+|+|+|..+.+||+|||+|....++.   ...+.||+|.|+|||++.+.+| +.++
T Consensus       117 ff~QIi~gv~yCH~~~icHRDLKpENlLLd~~~nIKIADFGMAsLe~~gk---lLeTSCGSPHYA~PEIV~G~pYdG~~s  193 (786)
T KOG0588|consen  117 FFRQILDGVSYCHAFNICHRDLKPENLLLDVKNNIKIADFGMASLEVPGK---LLETSCGSPHYAAPEIVSGRPYDGRPS  193 (786)
T ss_pred             HHHHHHHHHHHHhhhcceeccCCchhhhhhcccCEeeeccceeecccCCc---cccccCCCcccCCchhhcCCCCCCCcc
Confidence            47899999999999999999999999999999999999999998765443   2456789999999999999998 7889


Q ss_pred             ceehhhhhhccccCCCCCcCCC-----cccccccccccCCcccccccCCCccccccccccccc
Q 045449          757 DVCSFGIISGGKETRSMTVGET-----CTPVRESKYEVHPATTTIMEHPLPRVGEVMDVDRGK  814 (823)
Q Consensus       757 Dv~S~Gvv~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  814 (823)
                      ||||+|||++.+++|+.||++.     ..+++.+.++++-.   +..+....++.++++|+.+
T Consensus       194 DVWSCGVILfALLtG~LPFdDdNir~LLlKV~~G~f~MPs~---Is~eaQdLLr~ml~VDp~~  253 (786)
T KOG0588|consen  194 DVWSCGVILFALLTGKLPFDDDNIRVLLLKVQRGVFEMPSN---ISSEAQDLLRRMLDVDPST  253 (786)
T ss_pred             ccchhHHHHHHHHhCCCCCCCccHHHHHHHHHcCcccCCCc---CCHHHHHHHHHHhccCccc
Confidence            9999999999999999999875     35567777777633   2334445566666676655

>KOG0583 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.93  E-value=3.5e-27  Score=255.99  Aligned_cols=167  Identities=23%  Similarity=0.393  Sum_probs=135.7

Q ss_pred             HHhccCCccceeeccC------------CeEEEEEEehHh----hH-HHHHHHHHHHHHHhhcc-hhhHHH---------
Q 045449          625 RATDRFSENNLIGIGN------------GMEVAVKVFHQQ----YE-RALKSFEDECEVRKRIR-HRNLVK---------  677 (823)
Q Consensus       625 ~at~~f~~~~~lg~g~------------~~~vavK~~~~~----~~-~~~~~~~~E~~~l~~l~-h~niv~---------  677 (823)
                      ...++|...+.+|.|.            +..||||++.+.    .. ...+...+|+.++++++ ||||++         
T Consensus        14 ~~~g~y~~~~~lG~GsfgkV~~a~~~~t~~~vAiKii~~~~~~~~~~~~~~~i~rEi~~~~~~~~HpnI~~l~ev~~t~~   93 (370)
T KOG0583|consen   14 LSIGKYELGRTLGSGSFGKVKLAKHRLTGEKVAIKIIDRKKVSSKSQKLDELIKREISILRRLRSHPNIIRLLEVFATPT   93 (370)
T ss_pred             cccCceeeeeeecCCCCeeEEEeeeccCCCeEEEEEechhcccccccccchhhHHHHHHHHHhccCCCEeEEEEEEecCC
Confidence            3456777788888875            577999987664    12 33456778999999999 999998         


Q ss_pred             -------------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCC-CcEEEeecccccccCC
Q 045449          678 -------------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDED-MVAHISDFGIAKLLSG  725 (823)
Q Consensus       678 -------------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~-~~~kl~DfGla~~~~~  725 (823)
                                                     ++.|++.+++|+|++||+||||||+|||+|.+ +.+||+|||+++....
T Consensus        94 ~~~ivmEy~~gGdL~~~i~~~g~l~E~~ar~~F~Qlisav~y~H~~gi~HRDLK~ENilld~~~~~~Kl~DFG~s~~~~~  173 (370)
T KOG0583|consen   94 KIYIVMEYCSGGDLFDYIVNKGRLKEDEARKYFRQLISAVAYCHSRGIVHRDLKPENILLDGNEGNLKLSDFGLSAISPG  173 (370)
T ss_pred             eEEEEEEecCCccHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHhCCEeeCCCCHHHEEecCCCCCEEEeccccccccCC
Confidence                                           47899999999999999999999999999998 9999999999998741


Q ss_pred             CCccccccccccCCCcCcccccCCCc-c-ccccceehhhhhhccccCCCCCcCCCc-----ccccccccccCCcc
Q 045449          726 EDQLSKQTQTLATIGYMAPEYGTKGR-V-STRGDVCSFGIISGGKETRSMTVGETC-----TPVRESKYEVHPAT  793 (823)
Q Consensus       726 ~~~~~~~~~~~gt~~y~aPE~~~~~~-~-~~~~Dv~S~Gvv~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~  793 (823)
                        ......+.+||+.|+|||++.+.. | +.++||||+||++|.|++|..||++..     ..+..+.+..+...
T Consensus       174 --~~~~l~t~cGsp~Y~aPEvl~~~~~Y~g~~aDvWS~GViLy~ml~G~~PF~d~~~~~l~~ki~~~~~~~p~~~  246 (370)
T KOG0583|consen  174 --EDGLLKTFCGSPAYAAPEVLSGKGTYSGKAADVWSLGVILYVLLCGRLPFDDSNVPNLYRKIRKGEFKIPSYL  246 (370)
T ss_pred             --CCCcccCCCCCcccCCHHHhCCCCCcCCchhhhhhhHHHHHHHHhCCCCCCCccHHHHHHHHhcCCccCCCCc
Confidence              123356789999999999999877 8 478999999999999999999998742     23455555555443

>KOG0597 consensus Serine-threonine protein kinase FUSED [General function prediction only]

Probab=99.93  E-value=7.2e-27  Score=247.02  Aligned_cols=135  Identities=28%  Similarity=0.368  Sum_probs=120.1

Q ss_pred             CeEEEEEEehHhh--HHHHHHHHHHHHHHhhcchhhHHHH---------------------------------------H
Q 045449          641 GMEVAVKVFHQQY--ERALKSFEDECEVRKRIRHRNLVKI---------------------------------------I  679 (823)
Q Consensus       641 ~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~~---------------------------------------~  679 (823)
                      .+.||+|.+.+..  ++..+...+|++++++++|||||.+                                       .
T Consensus        27 ~~~vAik~i~K~gr~~k~l~~l~~ev~i~r~lkHpniv~m~esfEt~~~~~vVte~a~g~L~~il~~d~~lpEe~v~~~a  106 (808)
T KOG0597|consen   27 IQVVAIKFIDKSGRNEKELKNLRQEVRILRSLKHPNIVEMLESFETSAHLWVVTEYAVGDLFTILEQDGKLPEEQVRAIA  106 (808)
T ss_pred             eeEEEEEEehhcCCchHHHHHHHHHHHHHHhcCCcchhhHHHhhcccceEEEEehhhhhhHHHHHHhccCCCHHHHHHHH
Confidence            4679999997554  5566789999999999999999993                                       4


Q ss_pred             HHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccCCCcccccccee
Q 045449          680 SSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVC  759 (823)
Q Consensus       680 ~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~  759 (823)
                      ++.+.+|+|+|+.+|+|||+||.|||++..+++|+||||+||.+....  ...+...|||.|||||++.+++|+..+|.|
T Consensus       107 ~~LVsaL~yLhs~rilhrd~kPqniLl~~~~~~KlcdFg~Ar~m~~~t--~vltsikGtPlYmAPElv~e~pyd~~sDlW  184 (808)
T KOG0597|consen  107 YDLVSALYYLHSNRILHRDMKPQNILLEKGGTLKLCDFGLARAMSTNT--SVLTSIKGTPLYMAPELVEEQPYDHTSDLW  184 (808)
T ss_pred             HHHHHHHHHHHhcCcccccCCcceeeecCCCceeechhhhhhhcccCc--eeeeeccCcccccCHHHHcCCCccchhhHH
Confidence            578889999999999999999999999999999999999999876532  344567899999999999999999999999


Q ss_pred             hhhhhhccccCCCCCcCC
Q 045449          760 SFGIISGGKETRSMTVGE  777 (823)
Q Consensus       760 S~Gvv~~~~~~~~~~~~~  777 (823)
                      |+|||+||+..|+.||..
T Consensus       185 slGcilYE~~~G~PPF~a  202 (808)
T KOG0597|consen  185 SLGCILYELYVGQPPFYA  202 (808)
T ss_pred             HHHHHHHHHhcCCCCchH
Confidence            999999999999999864

>KOG0578 consensus p21-activated serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.93  E-value=9.7e-27  Score=248.78  Aligned_cols=134  Identities=28%  Similarity=0.357  Sum_probs=120.2

Q ss_pred             CeEEEEEEehHhhHHHHHHHHHHHHHHhhcchhhHHHH---------------------------------------HHH
Q 045449          641 GMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVKI---------------------------------------ISS  681 (823)
Q Consensus       641 ~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~---------------------------------------~~~  681 (823)
                      +..||||++........+-...|+.+|+..+|+|||++                                       ...
T Consensus       298 ~~~VaiK~m~l~~Q~~keLilnEi~Vm~~~~H~NiVnfl~Sylv~deLWVVMEym~ggsLTDvVt~~~~~E~qIA~Icre  377 (550)
T KOG0578|consen  298 KQEVAIKRMDLRKQPKKELLLNEILVMRDLHHPNIVNFLDSYLVGDELWVVMEYMEGGSLTDVVTKTRMTEGQIAAICRE  377 (550)
T ss_pred             CceEEEEEEEeccCCchhhhHHHHHHHHhccchHHHHHHHHhcccceeEEEEeecCCCchhhhhhcccccHHHHHHHHHH
Confidence            56799999987766666778899999999999999993                                       246


Q ss_pred             HHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccCCCccccccceehh
Q 045449          682 SLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSF  761 (823)
Q Consensus       682 ~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~  761 (823)
                      ++++|+|+|.+||+|||||.+|||++.++.+||+|||++..+.....  ...+.+|||+|||||++....|++|+||||+
T Consensus       378 ~l~aL~fLH~~gIiHrDIKSDnILL~~~g~vKltDFGFcaqi~~~~~--KR~TmVGTPYWMAPEVvtrk~YG~KVDIWSL  455 (550)
T KOG0578|consen  378 ILQGLKFLHARGIIHRDIKSDNILLTMDGSVKLTDFGFCAQISEEQS--KRSTMVGTPYWMAPEVVTRKPYGPKVDIWSL  455 (550)
T ss_pred             HHHHHHHHHhcceeeeccccceeEeccCCcEEEeeeeeeeccccccC--ccccccCCCCccchhhhhhcccCccccchhh
Confidence            78899999999999999999999999999999999999998765543  4567899999999999999999999999999


Q ss_pred             hhhhccccCCCCCcC
Q 045449          762 GIISGGKETRSMTVG  776 (823)
Q Consensus       762 Gvv~~~~~~~~~~~~  776 (823)
                      |+++.||..|+.||-
T Consensus       456 GIMaIEMveGEPPYl  470 (550)
T KOG0578|consen  456 GIMAIEMVEGEPPYL  470 (550)
T ss_pred             hhHHHHHhcCCCCcc
Confidence            999999999999985

>KOG0585 consensus Ca2+/calmodulin-dependent protein kinase kinase beta and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.93  E-value=1.3e-26  Score=241.19  Aligned_cols=153  Identities=25%  Similarity=0.360  Sum_probs=122.9

Q ss_pred             HhccCCccceeeccC------------CeEEEEEEehHhhH--------------HHHHHHHHHHHHHhhcchhhHHH--
Q 045449          626 ATDRFSENNLIGIGN------------GMEVAVKVFHQQYE--------------RALKSFEDECEVRKRIRHRNLVK--  677 (823)
Q Consensus       626 at~~f~~~~~lg~g~------------~~~vavK~~~~~~~--------------~~~~~~~~E~~~l~~l~h~niv~--  677 (823)
                      ..+.|.....||.|.            ++.||||++.+...              ...+...+||++|++++|||||+  
T Consensus        95 ~lNqy~l~~eiG~G~yGkVkLar~~~~~~l~AiKil~K~~~~~~~~~~~~~a~~~~~~ekv~~EIailKkl~H~nVV~Li  174 (576)
T KOG0585|consen   95 QLNQYELIKEIGSGQYGKVKLARDEVDGKLYAIKILPKKELRRQYGFPRQPAMKLMPIEKVRREIAILKKLHHPNVVKLI  174 (576)
T ss_pred             ehhheehhhhhcCCccceEEEEeecCCCcEEEEEeechhhhhhhcccccccccccCcHHHHHHHHHHHHhcCCcCeeEEE
Confidence            345677777778774            67799999975431              12357889999999999999999  


Q ss_pred             ----------------------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeec
Q 045449          678 ----------------------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDF  717 (823)
Q Consensus       678 ----------------------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~Df  717 (823)
                                                              ++..++.+|.|+|.+||+||||||+|+|++.+|++||+||
T Consensus       175 EvLDDP~s~~~YlVley~s~G~v~w~p~d~~els~~~Ar~ylrDvv~GLEYLH~QgiiHRDIKPsNLLl~~~g~VKIsDF  254 (576)
T KOG0585|consen  175 EVLDDPESDKLYLVLEYCSKGEVKWCPPDKPELSEQQARKYLRDVVLGLEYLHYQGIIHRDIKPSNLLLSSDGTVKISDF  254 (576)
T ss_pred             EeecCcccCceEEEEEeccCCccccCCCCcccccHHHHHHHHHHHHHHHHHHHhcCeeccccchhheEEcCCCcEEeecc
Confidence                                                    3556777888889999999999999999999999999999


Q ss_pred             ccccccCCC---CccccccccccCCCcCcccccCCCc----cccccceehhhhhhccccCCCCCcCCC
Q 045449          718 GIAKLLSGE---DQLSKQTQTLATIGYMAPEYGTKGR----VSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       718 Gla~~~~~~---~~~~~~~~~~gt~~y~aPE~~~~~~----~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      |.+......   .........+|||.|+|||...++.    .+.+.||||+||.+|-+++|+.||-+.
T Consensus       255 GVs~~~~~~~~~~~d~~L~~tvGTPAF~APE~c~~~~~~~~~g~a~DiWalGVTLYCllfG~~PF~~~  322 (576)
T KOG0585|consen  255 GVSNEFPQGSDEGSDDQLSRTVGTPAFFAPELCSGGNSFSYSGFALDIWALGVTLYCLLFGQLPFFDD  322 (576)
T ss_pred             ceeeecccCCccccHHHHhhcCCCccccchHhhcCCCCccccchhhhhhhhhhhHHHhhhccCCcccc
Confidence            999866322   1112234578999999999887633    367889999999999999999999765

>KOG0658 consensus Glycogen synthase kinase-3 [Carbohydrate transport and metabolism]

Probab=99.93  E-value=1.2e-26  Score=236.05  Aligned_cols=143  Identities=29%  Similarity=0.348  Sum_probs=119.2

Q ss_pred             cCCccceeeccC------------CeEEEEEEehHhhHHHHHHHHHHHHHHhhcchhhHHH-------------------
Q 045449          629 RFSENNLIGIGN------------GMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVK-------------------  677 (823)
Q Consensus       629 ~f~~~~~lg~g~------------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~-------------------  677 (823)
                      .|...+++|.|.            +..||||++..+.+    ---+|.++|+++.|||||+                   
T Consensus        25 ~~~~~~liG~GsFg~Vyq~~~~e~~~~vAIKKv~~d~r----~knrEl~im~~l~HpNIV~L~~~f~~~~~~d~~~lnlV  100 (364)
T KOG0658|consen   25 SYEAVRLIGSGSFGVVYQAKLRETEEEVAIKKVLQDKR----YKNRELQIMRKLDHPNIVRLLYFFSSSTESDEVYLNLV  100 (364)
T ss_pred             EEEeeEEEeecccceEEEEEEcCCCceeEEEEecCCCC----cCcHHHHHHHhcCCcCeeeEEEEEEecCCCchhHHHHH
Confidence            455566777775            56799998866532    1236899999999999998                   


Q ss_pred             -----------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCC-CcEEEeecccccccCCCC
Q 045449          678 -----------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDED-MVAHISDFGIAKLLSGED  727 (823)
Q Consensus       678 -----------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~-~~~kl~DfGla~~~~~~~  727 (823)
                                                   +..|+.++|.|+|+.+|+||||||+|+|+|.+ |.+||||||.|+.+...+
T Consensus       101 leymP~tL~~~~r~~~~~~~~mp~~~iKLYt~Qlfrgl~yLh~~~IcHRDIKPqNlLvD~~tg~LKicDFGSAK~L~~~e  180 (364)
T KOG0658|consen  101 LEYMPETLYRVIRHYTRANQRMPLLEIKLYTYQLFRGLAYLHSHGICHRDIKPQNLLVDPDTGVLKICDFGSAKVLVKGE  180 (364)
T ss_pred             HHhchHHHHHHHHHHhhcCCCCceeeeHHHHHHHHHHHHHHHhcCcccCCCChheEEEcCCCCeEEeccCCcceeeccCC
Confidence                                         24688999999999999999999999999965 999999999999987654


Q ss_pred             ccccccccccCCCcCcccccCCC-ccccccceehhhhhhccccCCCCCcCCC
Q 045449          728 QLSKQTQTLATIGYMAPEYGTKG-RVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       728 ~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      .   ..+...|..|+|||.+.+. .|+.+.||||.|||++||+-|+..|.+.
T Consensus       181 p---niSYicSRyYRaPELifga~~Yt~~IDiWSaGCV~aELl~g~plFpG~  229 (364)
T KOG0658|consen  181 P---NISYICSRYYRAPELIFGATEYTTSIDIWSAGCVMAELLKGQPLFPGD  229 (364)
T ss_pred             C---ceeEEEeccccCHHHHcCccccCceeEEhhhhHHHHHHhcCCcccCCC
Confidence            4   2456789999999988764 5999999999999999999999888764

>KOG0582 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.93  E-value=2.3e-26  Score=238.07  Aligned_cols=152  Identities=25%  Similarity=0.387  Sum_probs=127.5

Q ss_pred             ccCCccceeeccC------------CeEEEEEEehHhh-HHHHHHHHHHHHHHhhcchhhHHH-----------------
Q 045449          628 DRFSENNLIGIGN------------GMEVAVKVFHQQY-ERALKSFEDECEVRKRIRHRNLVK-----------------  677 (823)
Q Consensus       628 ~~f~~~~~lg~g~------------~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~-----------------  677 (823)
                      +.|.....||.|.            +..||||++..+. ....+.+.+|+..|+.++||||++                 
T Consensus        26 ~~YeL~e~IG~G~sa~V~~A~c~p~~e~VAIK~inLEkc~~~ld~l~kE~~~msl~~HPNIv~~~~sFvv~~~LWvVmpf  105 (516)
T KOG0582|consen   26 KDYELQEVIGVGASAVVYLARCIPTNEVVAIKIINLEKCNNDLDALRKEVQTMSLIDHPNIVTYHCSFVVDSELWVVMPF  105 (516)
T ss_pred             cceeEEEEEeccceeEeeeeeecccCCEEEEEEeehhhhhhhHHHHHHHHHHhhhcCCCCcceEEEEEEecceeEEeehh
Confidence            5677778888884            6779999998554 444688999999999999999998                 


Q ss_pred             -------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCc-ccc
Q 045449          678 -------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQ-LSK  731 (823)
Q Consensus       678 -------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~-~~~  731 (823)
                                               ++.+++.+|.|+|.+|.+|||||+.|||++.+|.+||+|||.+..+..... ...
T Consensus       106 Ma~GS~ldIik~~~~~Gl~E~~Ia~iLre~LkaL~YLH~~G~IHRdvKAgnILi~~dG~VkLadFgvsa~l~~~G~R~~~  185 (516)
T KOG0582|consen  106 MAGGSLLDIIKTYYPDGLEEASIATILREVLKALDYLHQNGHIHRDVKAGNILIDSDGTVKLADFGVSASLFDSGDRQVT  185 (516)
T ss_pred             hcCCcHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHhcCceecccccccEEEcCCCcEEEcCceeeeeecccCceeeE
Confidence                                     346889999999999999999999999999999999999998876644322 111


Q ss_pred             c-cccccCCCcCcccccCC--CccccccceehhhhhhccccCCCCCcCCCc
Q 045449          732 Q-TQTLATIGYMAPEYGTK--GRVSTRGDVCSFGIISGGKETRSMTVGETC  779 (823)
Q Consensus       732 ~-~~~~gt~~y~aPE~~~~--~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~~  779 (823)
                      . .+.+||+.|||||++..  ..|+.|+||||||+...|+..|..||....
T Consensus       186 rf~tfvgtp~wmAPEvl~q~~~GYdfKaDIwSfGITA~ELA~G~aPf~k~p  236 (516)
T KOG0582|consen  186 RFNTFVGTPCWMAPEVLMQQLHGYDFKADIWSFGITACELAHGHAPFSKYP  236 (516)
T ss_pred             eeccccCcccccChHHhhhcccCccchhhhhhhhHHHHHHhcCCCCcccCC
Confidence            2 56789999999999543  469999999999999999999999998764

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.92  E-value=2.2e-27  Score=241.60  Aligned_cols=411  Identities=18%  Similarity=0.208  Sum_probs=244.3

Q ss_pred             cEEEEEcCCCCCccccCcccCCCCCCcEEEccCCCCCCCCCCCCCCCCCCCEEECCC-CcCcCCCchhhhcCCCCcEEec
Q 045449           53 RVIGLNISSFNLQGTITPQLGNLSSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSD-NQLFGSLSSFIFNMSSMTTIDL  131 (823)
Q Consensus        53 ~v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~L  131 (823)
                      ..+.++|..|+|+...+.+|..+++|+.||||+|+|+.+-|++|.++++|..|-+.+ |+|+...-..|++|.+|+.|.+
T Consensus        68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll  147 (498)
T KOG4237|consen   68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL  147 (498)
T ss_pred             cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence            456777777777766666777777888888888887777777777777766665544 7777666677777777777777


Q ss_pred             ccccccCccCccccCCCCCCccccccceeeeccceeeccCcc-ccccchhhHHHHHhhcCCCcc------------cCCc
Q 045449          132 SINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPK-EIGNLTKLKEIISTITNSTVC------------EIPR  198 (823)
Q Consensus       132 s~N~l~~~~p~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~-~l~~l~~L~~L~~l~~n~~~~------------~ip~  198 (823)
                      .-|++.-...+       +|..+++|..|.|..|.+. .++. .|..+..++.+. +..|.+.+            ..|.
T Consensus       148 Nan~i~Cir~~-------al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlh-lA~np~icdCnL~wla~~~a~~~i  218 (498)
T KOG4237|consen  148 NANHINCIRQD-------ALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLH-LAQNPFICDCNLPWLADDLAMNPI  218 (498)
T ss_pred             ChhhhcchhHH-------HHHHhhhcchhcccchhhh-hhccccccchhccchHh-hhcCccccccccchhhhHHhhchh
Confidence            77777633333       3467777777777777776 4443 677777777765 55554221            1233


Q ss_pred             ccCCcchhhhhccccccccCCccccccC-CCCCcEEEccCCcccccCCcccccCCCCccEEEeeccccccccCccccCCC
Q 045449          199 EIGNLPYLARLALATNNLVGVVPVTIFN-MSALKEISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSITNSS  277 (823)
Q Consensus       199 ~l~~l~~L~~L~Ls~N~l~~~~p~~~~~-l~~L~~L~Ls~N~l~g~lp~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~  277 (823)
                      +++...-..-..+.++++..+-+..|.. +..+.+-..+.....+.-|...+..+++|+.|+|++|+++++-+.+|.++.
T Consensus       219 etsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a  298 (498)
T KOG4237|consen  219 ETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAA  298 (498)
T ss_pred             hcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchh
Confidence            3444444444444444444443333322 112222222233333456666666778888888888888877777888888


Q ss_pred             CCCeEEeecccccccCCCccCCCcccCcccccCccccCCCCcccccccccCCCCceEEEeecCCCCccC-Cccccccccc
Q 045449          278 KLSDLELGENLFSGFIPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGIL-PKSIGNFSLS  356 (823)
Q Consensus       278 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~-p~~~~~~~~~  356 (823)
                      +++.|.|..|++..+....|.++..|+.|+|.+|+|+..     .+.+|..+..|..|.|-.|.+.--- -.|++..   
T Consensus       299 ~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~-----~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~W---  370 (498)
T KOG4237|consen  299 ELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTV-----APGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEW---  370 (498)
T ss_pred             hhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEE-----ecccccccceeeeeehccCcccCccchHHHHHH---
Confidence            888888888887777777777777777788888877776     4556777777777777777664210 0112211   


Q ss_pred             cceEEecCCcceeccCccccCcccccEEEcccCcCCC---CchhcccccCCCCEEEccCCCCCCcchHhhhcCCCCC-EE
Q 045449          357 LETILMANCSISGNIPQVVGNLSNLLVLELGGNNLTG---PIPVTFSQLQTLQAFDLTRNKLAGPITDELCHLARLH-SL  432 (823)
Q Consensus       357 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g---~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~-~L  432 (823)
                           |..+.-.|..|-  +.-..++.++++.+.+..   ..|++.+..+            ++.-|.   .++-+. +.
T Consensus       371 -----lr~~~~~~~~~C--q~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~------------s~~cP~---~c~c~~tVv  428 (498)
T KOG4237|consen  371 -----LRKKSVVGNPRC--QSPGFVRQIPISDVAFGDFRCGGPEELGCLT------------SSPCPP---PCTCLDTVV  428 (498)
T ss_pred             -----HhhCCCCCCCCC--CCCchhccccchhccccccccCCccccCCCC------------CCCCCC---CcchhhhhH
Confidence                 222222222211  112234455555544431   1111111100            001111   112222 22


Q ss_pred             EcccCcCcccccccccCCCCCCeEeccCCccccccchhhhccCCCcEEeccccccccccCccccCCCCCcEEEcccC
Q 045449          433 VLQGNKFSGSIPSCLGNLTSVRVLYLGLNIFTSVLSSTIWNLKDILFIDVSSNFLDGPLSLDIGNLKVVIGLDFSRN  509 (823)
Q Consensus       433 ~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~ls~N  509 (823)
                      ..|++.+. .+|..+.  ..-.+||+.+|.++. +|..  .+.+| .+|+|+|+++-.--..|.+|+.|.+|-+|+|
T Consensus       429 RcSnk~lk-~lp~~iP--~d~telyl~gn~~~~-vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn  498 (498)
T KOG4237|consen  429 RCSNKLLK-LLPRGIP--VDVTELYLDGNAITS-VPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN  498 (498)
T ss_pred             hhcccchh-hcCCCCC--chhHHHhcccchhcc-cCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence            33444443 4444332  234577888888876 4544  56667 8888888888766677888888888888876

>KOG0663 consensus Protein kinase PITSLRE and related kinases [General function prediction only]

Probab=99.92  E-value=2.5e-26  Score=229.30  Aligned_cols=136  Identities=29%  Similarity=0.283  Sum_probs=117.2

Q ss_pred             CeEEEEEEehHhhHH--HHHHHHHHHHHHhhcchhhHHH-----------------------------------------
Q 045449          641 GMEVAVKVFHQQYER--ALKSFEDECEVRKRIRHRNLVK-----------------------------------------  677 (823)
Q Consensus       641 ~~~vavK~~~~~~~~--~~~~~~~E~~~l~~l~h~niv~-----------------------------------------  677 (823)
                      +..||+|+++.+.++  .--.-.|||.++.+++|||||.                                         
T Consensus       101 ~eIVALKr~kmekek~GFPItsLREIniLl~~~H~NIV~vkEVVvG~~~d~iy~VMe~~EhDLksl~d~m~q~F~~~evK  180 (419)
T KOG0663|consen  101 DEIVALKRLKMEKEKEGFPITSLREINILLKARHPNIVEVKEVVVGSNMDKIYIVMEYVEHDLKSLMETMKQPFLPGEVK  180 (419)
T ss_pred             ceeEEeeecccccccCCCcchhHHHHHHHHhcCCCCeeeeEEEEeccccceeeeeHHHHHhhHHHHHHhccCCCchHHHH
Confidence            577999999866422  1124579999999999999998                                         


Q ss_pred             -HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccCCCc-cccc
Q 045449          678 -IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGR-VSTR  755 (823)
Q Consensus       678 -~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~-~~~~  755 (823)
                       ++.|++.++.|+|...|+|||+|++|+|+...|.+||+|||+||.+....  ...+..+-|.+|+|||.+.+.+ |++.
T Consensus       181 ~L~~QlL~glk~lH~~wilHRDLK~SNLLm~~~G~lKiaDFGLAR~ygsp~--k~~T~lVVTLWYRaPELLLG~~tyst~  258 (419)
T KOG0663|consen  181 TLMLQLLRGLKHLHDNWILHRDLKTSNLLLSHKGILKIADFGLAREYGSPL--KPYTPLVVTLWYRAPELLLGAKTYSTA  258 (419)
T ss_pred             HHHHHHHHHHHHHhhceeEecccchhheeeccCCcEEecccchhhhhcCCc--ccCcceEEEeeecCHHHhcCCcccCcc
Confidence             35799999999999999999999999999999999999999999886542  3456778899999999988765 8999


Q ss_pred             cceehhhhhhccccCCCCCcCCC
Q 045449          756 GDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       756 ~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      .|+||+|||++|++.++..|.+.
T Consensus       259 iDMWSvGCI~aE~l~~kPlf~G~  281 (419)
T KOG0663|consen  259 VDMWSVGCIFAELLTQKPLFPGK  281 (419)
T ss_pred             hhhhhHHHHHHHHHhcCCCCCCC
Confidence            99999999999999999888664

>KOG0660 consensus Mitogen-activated protein kinase [Signal transduction mechanisms]

Probab=99.92  E-value=4e-26  Score=231.94  Aligned_cols=155  Identities=29%  Similarity=0.339  Sum_probs=129.3

Q ss_pred             HHHhccCCccceeeccC------------CeEEEEEEehHhh--HHHHHHHHHHHHHHhhcchhhHHH------------
Q 045449          624 LRATDRFSENNLIGIGN------------GMEVAVKVFHQQY--ERALKSFEDECEVRKRIRHRNLVK------------  677 (823)
Q Consensus       624 ~~at~~f~~~~~lg~g~------------~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~------------  677 (823)
                      ......|...+.+|.|+            |..||||.+....  ....++..+|+.++++++|+||+.            
T Consensus        18 ~~i~~~y~~~~~iG~GAyGvVcsA~~~~t~~~VAIKKi~~~F~~~~~akRtlRElklLr~~~HeNIi~l~di~~p~~~~~   97 (359)
T KOG0660|consen   18 FEIPRYYVLIEPIGRGAYGVVCSAKDKRTGEKVAIKKILNPFENQIDAKRTLRELKLLRHLRHENIIGLLDIFRPPSRDK   97 (359)
T ss_pred             EeccceecccccccCcceeeEEEEEEcCCCCEeehhhhhhhhhchHHHHHHHHHHHHHHHhcCCCcceEEeecccccccc
Confidence            34445555556777775            6779999987443  344578889999999999999998            


Q ss_pred             --------------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCC
Q 045449          678 --------------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSG  725 (823)
Q Consensus       678 --------------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~  725 (823)
                                                      ++.|++.+|.|+|+.+|+|||+||+|++++.+...||+|||+||....
T Consensus        98 f~DvYiV~elMetDL~~iik~~~~L~d~H~q~f~YQiLrgLKyiHSAnViHRDLKPsNll~n~~c~lKI~DFGLAR~~~~  177 (359)
T KOG0660|consen   98 FNDVYLVFELMETDLHQIIKSQQDLTDDHAQYFLYQILRGLKYIHSANVIHRDLKPSNLLLNADCDLKICDFGLARYLDK  177 (359)
T ss_pred             cceeEEehhHHhhHHHHHHHcCccccHHHHHHHHHHHHHhcchhhcccccccccchhheeeccCCCEEeccccceeeccc
Confidence                                            367999999999999999999999999999999999999999998764


Q ss_pred             CCccccccccccCCCcCcccccC-CCccccccceehhhhhhccccCCCCCcCCC
Q 045449          726 EDQLSKQTQTLATIGYMAPEYGT-KGRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       726 ~~~~~~~~~~~gt~~y~aPE~~~-~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      .......+..+.|.+|+|||++. ...|+...||||.|||++||++|+..|.+.
T Consensus       178 ~~~~~~mTeYVaTRWYRAPElll~~~~Yt~aiDiWSvGCI~AEmL~gkplFpG~  231 (359)
T KOG0660|consen  178 FFEDGFMTEYVATRWYRAPELLLNSSEYTKAIDIWSVGCILAEMLTGKPLFPGK  231 (359)
T ss_pred             cCcccchhcceeeeeecCHHHHhccccccchhhhhhhhHHHHHHHcCCCCCCCC
Confidence            32333457788999999999765 467999999999999999999999888664

>KOG0193 consensus Serine/threonine protein kinase RAF [Signal transduction mechanisms]

Probab=99.92  E-value=8e-26  Score=242.26  Aligned_cols=192  Identities=25%  Similarity=0.317  Sum_probs=135.6

Q ss_pred             cCCccceeeccC-Ce--------EEEEEEehHhh--HHHHHHHHHHHHHHhhcchhhHHH--------------------
Q 045449          629 RFSENNLIGIGN-GM--------EVAVKVFHQQY--ERALKSFEDECEVRKRIRHRNLVK--------------------  677 (823)
Q Consensus       629 ~f~~~~~lg~g~-~~--------~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~--------------------  677 (823)
                      .+.....||.|. |+        .||||++....  ....+.|+.|+.++++-+|.||+=                    
T Consensus       393 ev~l~~rIGsGsFGtV~Rg~whGdVAVK~Lnv~~pt~~qlqaFKnEVa~lkkTRH~NIlLFMG~~~~p~~AIiTqwCeGs  472 (678)
T KOG0193|consen  393 EVLLGERIGSGSFGTVYRGRWHGDVAVKLLNVDDPTPEQLQAFKNEVAVLKKTRHENILLFMGACMNPPLAIITQWCEGS  472 (678)
T ss_pred             HhhccceeccccccceeecccccceEEEEEecCCCCHHHHHHHHHHHHHHhhcchhhheeeehhhcCCceeeeehhccCc
Confidence            334457899886 22        39999997654  446689999999999999999996                    


Q ss_pred             --------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCcccccccccc
Q 045449          678 --------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLA  737 (823)
Q Consensus       678 --------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~g  737 (823)
                                          ++.|+++++.|+|.++|||||+|..||++.+++.|||+|||++..-..-..........|
T Consensus       473 SLY~hlHv~etkfdm~~~idIAqQiaqGM~YLHAK~IIHrDLKSnNIFl~~~~kVkIgDFGLatvk~~w~g~~q~~qp~g  552 (678)
T KOG0193|consen  473 SLYTHLHVQETKFDMNTTIDIAQQIAQGMDYLHAKNIIHRDLKSNNIFLHEDLKVKIGDFGLATVKTRWSGEQQLEQPHG  552 (678)
T ss_pred             hhhhhccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccccceEEccCCcEEEecccceeeeeeeccccccCCCcc
Confidence                                345788888899999999999999999999999999999999864321111111223457


Q ss_pred             CCCcCcccccCCC---ccccccceehhhhhhccccCCCCCcCCCcc-cc--cccccccCCcccccccCCCcccccccccc
Q 045449          738 TIGYMAPEYGTKG---RVSTRGDVCSFGIISGGKETRSMTVGETCT-PV--RESKYEVHPATTTIMEHPLPRVGEVMDVD  811 (823)
Q Consensus       738 t~~y~aPE~~~~~---~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  811 (823)
                      ...|||||++..+   +|++.+||||||||.||+++|..||..... ++  +.++=...|...........++.+++..+
T Consensus       553 silwmAPEvIRmqd~nPfS~qSDVYaFGiV~YELltg~lPysi~~~dqIifmVGrG~l~pd~s~~~s~~pk~mk~Ll~~C  632 (678)
T KOG0193|consen  553 SLLWMAPEVIRMQDDNPFSFQSDVYAFGIVWYELLTGELPYSIQNRDQIIFMVGRGYLMPDLSKIRSNCPKAMKRLLSDC  632 (678)
T ss_pred             chhhhcHHHHhhcccCCCCcccchhhhhHHHHHHHhCcCCcCCCChhheEEEecccccCccchhhhccCHHHHHHHHHHH
Confidence            8899999998753   589999999999999999999999973221 11  11111222333333333434555555555


Q ss_pred             cccccccCC
Q 045449          812 RGKARIQGK  820 (823)
Q Consensus       812 ~~~~~~~~~  820 (823)
                      ..+.+-+||
T Consensus       633 ~~~~~~eRP  641 (678)
T KOG0193|consen  633 WKFDREERP  641 (678)
T ss_pred             HhcCcccCc
Confidence            444444443

>KOG4721 consensus Serine/threonine protein kinase, contains leucine zipper domain [Signal transduction mechanisms]

Probab=99.92  E-value=4.3e-26  Score=240.83  Aligned_cols=147  Identities=28%  Similarity=0.403  Sum_probs=122.1

Q ss_pred             ccCHHHHHHHhccCCccceeeccC----------CeEEEEEEehHhhHHHHHHHHHHHHHHhhcchhhHHHH--------
Q 045449          617 RFSYHELLRATDRFSENNLIGIGN----------GMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVKI--------  678 (823)
Q Consensus       617 ~~~~~~l~~at~~f~~~~~lg~g~----------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~--------  678 (823)
                      +++|+++.+.       +.+|.|+          +..||||.++...       ..+|.-+++++|+||+.+        
T Consensus       120 eiPFe~IsEL-------eWlGSGaQGAVF~Grl~netVAVKKV~elk-------ETdIKHLRkLkH~NII~FkGVCtqsP  185 (904)
T KOG4721|consen  120 EIPFEEISEL-------EWLGSGAQGAVFLGRLHNETVAVKKVRELK-------ETDIKHLRKLKHPNIITFKGVCTQSP  185 (904)
T ss_pred             cCCHHHhhhh-------hhhccCcccceeeeeccCceehhHHHhhhh-------hhhHHHHHhccCcceeeEeeeecCCc
Confidence            4667776553       5667664          6679999876443       346778999999999982        


Q ss_pred             --------------------------------HHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCC
Q 045449          679 --------------------------------ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGE  726 (823)
Q Consensus       679 --------------------------------~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~  726 (823)
                                                      ..+++.++||+|.+.|||||+|..|||+..+..+||+|||-++.....
T Consensus       186 cyCIiMEfCa~GqL~~VLka~~~itp~llv~Wsk~IA~GM~YLH~hKIIHRDLKSPNiLIs~~d~VKIsDFGTS~e~~~~  265 (904)
T KOG4721|consen  186 CYCIIMEFCAQGQLYEVLKAGRPITPSLLVDWSKGIAGGMNYLHLHKIIHRDLKSPNILISYDDVVKISDFGTSKELSDK  265 (904)
T ss_pred             eeEEeeeccccccHHHHHhccCccCHHHHHHHHHHhhhhhHHHHHhhHhhhccCCCceEeeccceEEeccccchHhhhhh
Confidence                                            246677889999999999999999999999999999999999876543


Q ss_pred             CccccccccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCCcc
Q 045449          727 DQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGETCT  780 (823)
Q Consensus       727 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~~~  780 (823)
                         .....++||..|||||++...+.++|+||||||||+|||+|+..|+.++..
T Consensus       266 ---STkMSFaGTVaWMAPEvIrnePcsEKVDIwSfGVVLWEmLT~EiPYkdVds  316 (904)
T KOG4721|consen  266 ---STKMSFAGTVAWMAPEVIRNEPCSEKVDIWSFGVVLWEMLTGEIPYKDVDS  316 (904)
T ss_pred             ---hhhhhhhhhHhhhCHHHhhcCCcccccceehhHHHHHHHHhcCCCccccch
Confidence               223468999999999999999999999999999999999999999988643

>KOG0599 consensus Phosphorylase kinase gamma subunit [Carbohydrate transport and metabolism]

Probab=99.91  E-value=4.9e-26  Score=220.73  Aligned_cols=184  Identities=26%  Similarity=0.369  Sum_probs=146.4

Q ss_pred             ccCCccceeeccC------------CeEEEEEEehHh--------hHHHHHHHHHHHHHHhhc-chhhHHH---------
Q 045449          628 DRFSENNLIGIGN------------GMEVAVKVFHQQ--------YERALKSFEDECEVRKRI-RHRNLVK---------  677 (823)
Q Consensus       628 ~~f~~~~~lg~g~------------~~~vavK~~~~~--------~~~~~~~~~~E~~~l~~l-~h~niv~---------  677 (823)
                      ..|...+++|+|.            |...|+|++...        .....+.-.+|+++++++ .||+|++         
T Consensus        17 ~~y~pkeilgrgvss~vrRci~k~t~~e~a~kii~~~at~~~~e~~~~~~EaT~~Ev~ILRqv~GHP~II~l~D~yes~s   96 (411)
T KOG0599|consen   17 AKYEPKEILGRGVSSVVRRCIHKETGKEFAVKIIDVTATTESGETPYEMREATRQEISILRQVMGHPYIIDLQDVYESDA   96 (411)
T ss_pred             hhcChHHHhcccchhhhhhhhhcccccceeEEEEEecccccCCccHHHHHHHHHHHHHHHHHhcCCCcEEEeeeeccCcc
Confidence            3455666777664            677899988532        234456778999999998 7999998         


Q ss_pred             -------------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCC
Q 045449          678 -------------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGE  726 (823)
Q Consensus       678 -------------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~  726 (823)
                                                     ++.|+++++.|+|...|||||+||+|||+|++..+||+|||+|+.+.++
T Consensus        97 F~FlVFdl~prGELFDyLts~VtlSEK~tR~iMrqlfegVeylHa~~IVHRDLKpENILlddn~~i~isDFGFa~~l~~G  176 (411)
T KOG0599|consen   97 FVFLVFDLMPRGELFDYLTSKVTLSEKETRRIMRQLFEGVEYLHARNIVHRDLKPENILLDDNMNIKISDFGFACQLEPG  176 (411)
T ss_pred             hhhhhhhhcccchHHHHhhhheeecHHHHHHHHHHHHHHHHHHHHhhhhhcccChhheeeccccceEEeccceeeccCCc
Confidence                                           4678999999999999999999999999999999999999999998766


Q ss_pred             CccccccccccCCCcCcccccCC------CccccccceehhhhhhccccCCCCCcCCC-----cccccccccccC-Cccc
Q 045449          727 DQLSKQTQTLATIGYMAPEYGTK------GRVSTRGDVCSFGIISGGKETRSMTVGET-----CTPVRESKYEVH-PATT  794 (823)
Q Consensus       727 ~~~~~~~~~~gt~~y~aPE~~~~------~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~-----~~~~~~~~~~~~-~~~~  794 (823)
                      +.   ....+|||+|.|||.+..      ..|+..+|.||+||++|-++.|..||-.-     .+.+++++|++. |.+.
T Consensus       177 ek---LrelCGTPgYLAPEtikC~m~e~~pGYs~EVD~Wa~GVImyTLLaGcpPFwHRkQmlMLR~ImeGkyqF~speWa  253 (411)
T KOG0599|consen  177 EK---LRELCGTPGYLAPETIKCSMYENHPGYSKEVDEWACGVIMYTLLAGCPPFWHRKQMLMLRMIMEGKYQFRSPEWA  253 (411)
T ss_pred             hh---HHHhcCCCcccChhheeeecccCCCCccchhhHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHhcccccCCcchh
Confidence            54   345789999999998753      35888999999999999999999998553     344667777776 4555


Q ss_pred             ccccCCCccccccccccccc
Q 045449          795 TIMEHPLPRVGEVMDVDRGK  814 (823)
Q Consensus       795 ~~~~~~~~~~~~~~~~~~~~  814 (823)
                      ...+.+...+..++.+++.+
T Consensus       254 dis~~~KdLIsrlLqVdp~~  273 (411)
T KOG0599|consen  254 DISATVKDLISRLLQVDPTK  273 (411)
T ss_pred             hccccHHHHHHHHHeeCchh
Confidence            56666666777777776654

>KOG0605 consensus NDR and related serine/threonine kinases [General function prediction only]

Probab=99.91  E-value=1.7e-25  Score=237.28  Aligned_cols=153  Identities=24%  Similarity=0.290  Sum_probs=129.8

Q ss_pred             HhccCCccceeeccC------------CeEEEEEEehHhh---HHHHHHHHHHHHHHhhcchhhHHH-------------
Q 045449          626 ATDRFSENNLIGIGN------------GMEVAVKVFHQQY---ERALKSFEDECEVRKRIRHRNLVK-------------  677 (823)
Q Consensus       626 at~~f~~~~~lg~g~------------~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~-------------  677 (823)
                      ..++|+.-..||+|+            |..+|+|++++..   ...++..+.|-++|....+|.||+             
T Consensus       139 ~~~DFe~Lk~IgkGAfGeVrLarKk~Tg~iyAmK~LkKS~M~~~~Qv~hV~aERdiL~~~ds~~vVKLyYsFQD~~~LYL  218 (550)
T KOG0605|consen  139 SLDDFELLKVIGKGAFGEVRLARKKDTGEIYAMKILKKSEMLKKNQVEHVRAERDILAEVDSPWVVKLYYSFQDKEYLYL  218 (550)
T ss_pred             CcccchhheeeccccceeEEEEEEccCCcEEeeecccHHHHHhhhhHHHHHHHHHHhhhcCCCcEEEEEEEecCCCeeEE
Confidence            457899999999997            6779999998664   345577889999999999999999             


Q ss_pred             ---------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCC----
Q 045449          678 ---------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGE----  726 (823)
Q Consensus       678 ---------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~----  726 (823)
                                                 ++|+.+-|++.+|..|++||||||+|+|+|..|++||+|||++..+...    
T Consensus       219 iMEylPGGD~mTLL~~~~~L~e~~arfYiaE~vlAI~~iH~~gyIHRDIKPdNlLiD~~GHiKLSDFGLs~gl~~~~~~~  298 (550)
T KOG0605|consen  219 IMEYLPGGDMMTLLMRKDTLTEDWARFYIAETVLAIESIHQLGYIHRDIKPDNLLIDAKGHIKLSDFGLSTGLDKKHRIE  298 (550)
T ss_pred             EEEecCCccHHHHHHhcCcCchHHHHHHHHHHHHHHHHHHHcCcccccCChhheeecCCCCEeeccccccchhhhhhhhh
Confidence                                       4789999999999999999999999999999999999999998643210    


Q ss_pred             ------------------Ccc-----c------------------cccccccCCCcCcccccCCCccccccceehhhhhh
Q 045449          727 ------------------DQL-----S------------------KQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIIS  765 (823)
Q Consensus       727 ------------------~~~-----~------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~  765 (823)
                                        +..     .                  .....+|||.|||||++.+..|+..+|+||+|||+
T Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~nrr~~a~StVGTPDYiAPEVll~kgY~~~cDwWSLG~Im  378 (550)
T KOG0605|consen  299 SYRLDEQMQINLSEAKPSDFPKFNTPRSTMSRREQLQTWKRNRRQLAYSTVGTPDYIAPEVLLGKGYGKECDWWSLGCIM  378 (550)
T ss_pred             hhcchhhhhhhhccCCCccccccccccchhhHHHHHHHHHhhhhhhhhcccCCccccchHHHhcCCCCccccHHHHHHHH
Confidence                              000     0                  01135899999999999999999999999999999


Q ss_pred             ccccCCCCCcCCC
Q 045449          766 GGKETRSMTVGET  778 (823)
Q Consensus       766 ~~~~~~~~~~~~~  778 (823)
                      |||+.|-.||...
T Consensus       379 yEmLvGyPPF~s~  391 (550)
T KOG0605|consen  379 YEMLVGYPPFCSE  391 (550)
T ss_pred             HHHHhCCCCCCCC
Confidence            9999999999653

>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.91  E-value=1.4e-25  Score=244.53  Aligned_cols=150  Identities=25%  Similarity=0.273  Sum_probs=130.4

Q ss_pred             hccCCccceeeccC------------CeEEEEEEehHhh---HHHHHHHHHHHHHHhhc-chhhHHH-------------
Q 045449          627 TDRFSENNLIGIGN------------GMEVAVKVFHQQY---ERALKSFEDECEVRKRI-RHRNLVK-------------  677 (823)
Q Consensus       627 t~~f~~~~~lg~g~------------~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l-~h~niv~-------------  677 (823)
                      .++|...+++|+|.            ++.+|||+++++.   ...++..+.|.+|+... +||.++.             
T Consensus       367 l~~F~~l~vLGkGsFGkV~lae~k~~~e~yAIK~LKK~~Il~~d~Ve~~~~EkrI~~la~~HPFL~~L~~~fQT~~~l~f  446 (694)
T KOG0694|consen  367 LDDFRLLAVLGRGSFGKVLLAELKGTNEYYAIKVLKKGDILQRDEVESLMCEKRIFELANRHPFLVNLFSCFQTKEHLFF  446 (694)
T ss_pred             ccceEEEEEeccCcCceEEEEEEcCCCcEEEEEEeeccceeccccHHHHHHHHHHHHHhccCCeEeecccccccCCeEEE
Confidence            46788888999886            5669999998765   44567888899988877 5999998             


Q ss_pred             --------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCcccc
Q 045449          678 --------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSK  731 (823)
Q Consensus       678 --------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~  731 (823)
                                                ++|.++-+|+|+|+.|||+||+|.+|||+|.+|++||+|||+++.-....  ..
T Consensus       447 vmey~~Ggdm~~~~~~~~F~e~rarfyaAev~l~L~fLH~~~IIYRDlKLdNiLLD~eGh~kiADFGlcKe~m~~g--~~  524 (694)
T KOG0694|consen  447 VMEYVAGGDLMHHIHTDVFSEPRARFYAAEVVLGLQFLHENGIIYRDLKLDNLLLDTEGHVKIADFGLCKEGMGQG--DR  524 (694)
T ss_pred             EEEecCCCcEEEEEecccccHHHHHHHHHHHHHHHHHHHhcCceeeecchhheEEcccCcEEecccccccccCCCC--Cc
Confidence                                      46889999999999999999999999999999999999999999754222  24


Q ss_pred             ccccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCC
Q 045449          732 QTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       732 ~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      ..+++|||.|||||++.+..|+..+|+|||||++|||+.|..||.+.
T Consensus       525 TsTfCGTpey~aPEil~e~~Yt~aVDWW~lGVLlyeML~Gq~PF~gd  571 (694)
T KOG0694|consen  525 TSTFCGTPEFLAPEVLTEQSYTRAVDWWGLGVLLYEMLVGESPFPGD  571 (694)
T ss_pred             cccccCChhhcChhhhccCcccchhhHHHHHHHHHHHHcCCCCCCCC
Confidence            56789999999999999999999999999999999999999999754

>KOG0198 consensus MEKK and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.91  E-value=3e-25  Score=231.10  Aligned_cols=150  Identities=32%  Similarity=0.461  Sum_probs=121.7

Q ss_pred             cCCccceeeccC------------CeEEEEEEehHhhHHHHHHHHHHHHHHhhcchhhHHH-------------------
Q 045449          629 RFSENNLIGIGN------------GMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVK-------------------  677 (823)
Q Consensus       629 ~f~~~~~lg~g~------------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~-------------------  677 (823)
                      ++...+.+|+|.            |...|||.+........+.+.+|+.++++++|||||+                   
T Consensus        18 ~~~~~~~lG~Gs~G~V~l~~~~~~g~~~AvK~v~~~~~~~~~~l~~Ei~iL~~l~~p~IV~~~G~~~~~~~~~~~i~mEy   97 (313)
T KOG0198|consen   18 NWSKGKLLGRGSFGSVYLATNKKTGELMAVKSVELEDSPTSESLEREIRILSRLNHPNIVQYYGSSSSRENDEYNIFMEY   97 (313)
T ss_pred             hhhhhccccCccceEEEEEEecCCCcceeeeeeecccchhHHHHHHHHHHHHhCCCCCEEeeCCccccccCeeeEeeeec
Confidence            344556777764            4678999887653333677999999999999999998                   


Q ss_pred             ------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCC-CCcEEEeecccccccCCC-Ccccc
Q 045449          678 ------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDE-DMVAHISDFGIAKLLSGE-DQLSK  731 (823)
Q Consensus       678 ------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~-~~~~kl~DfGla~~~~~~-~~~~~  731 (823)
                                              +..|++++|.|+|++|||||||||+|||++. ++.+||+|||+++..... .....
T Consensus        98 ~~~GsL~~~~~~~g~~l~E~~v~~ytr~iL~GL~ylHs~g~vH~DiK~~NiLl~~~~~~~KlaDFG~a~~~~~~~~~~~~  177 (313)
T KOG0198|consen   98 APGGSLSDLIKRYGGKLPEPLVRRYTRQILEGLAYLHSKGIVHCDIKPANILLDPSNGDVKLADFGLAKKLESKGTKSDS  177 (313)
T ss_pred             cCCCcHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHhCCEeccCcccceEEEeCCCCeEEeccCccccccccccccccc
Confidence                                    3568899999999999999999999999999 699999999999876531 11122


Q ss_pred             ccccccCCCcCcccccCCCc-cccccceehhhhhhccccCCCCCcCCC
Q 045449          732 QTQTLATIGYMAPEYGTKGR-VSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       732 ~~~~~gt~~y~aPE~~~~~~-~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      .....||+.|||||++..+. .+.++||||+||++.||.||..||.+.
T Consensus       178 ~~~~~Gtp~~maPEvi~~g~~~~~~sDiWSlGCtVvEM~Tg~~PW~~~  225 (313)
T KOG0198|consen  178 ELSVQGTPNYMAPEVIRNGEVARRESDIWSLGCTVVEMLTGKPPWSEF  225 (313)
T ss_pred             cccccCCccccCchhhcCCCcCCccchhhhcCCEEEeccCCCCcchhh
Confidence            34578999999999998643 345999999999999999999999873

>PLN03210 Resistant to P

Probab=99.91  E-value=6.4e-24  Score=264.60  Aligned_cols=343  Identities=19%  Similarity=0.240  Sum_probs=246.1

Q ss_pred             cccCCCCCCcEEEccCCC------CCCCCCCCCCCCC-CCCEEECCCCcCcCCCchhhhcCCCCcEEecccccccCccCc
Q 045449           70 PQLGNLSSLQTLDLSHNK------LSGNIPSSIFNMH-TLKLLDFSDNQLFGSLSSFIFNMSSMTTIDLSINRLSGELPA  142 (823)
Q Consensus        70 ~~l~~l~~L~~L~Ls~N~------l~g~~p~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~  142 (823)
                      .+|..+.+|+.|.+..+.      +...+|..|..++ +|+.|++.+|.+. .+|..| ...+|++|+|++|++. .+|.
T Consensus       552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~  628 (1153)
T PLN03210        552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWD  628 (1153)
T ss_pred             HHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-cccc
Confidence            457788889999887653      3345777777764 5888888888875 556666 4678888888888876 3333


Q ss_pred             cccCCCCCCccccccceeeeccceeeccCccccccchhhHHHHHhhcCCCcccCCcccCCcchhhhhccccccccCCccc
Q 045449          143 NICKIPSTLSKCKQLEELNLGFNNLSGAIPKEIGNLTKLKEIISTITNSTVCEIPREIGNLPYLARLALATNNLVGVVPV  222 (823)
Q Consensus       143 ~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~~l~~n~~~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~  222 (823)
                             .+..+++|++|+|++|...+.+|.                          +..+++|+.|+|++|.....+|.
T Consensus       629 -------~~~~l~~Lk~L~Ls~~~~l~~ip~--------------------------ls~l~~Le~L~L~~c~~L~~lp~  675 (1153)
T PLN03210        629 -------GVHSLTGLRNIDLRGSKNLKEIPD--------------------------LSMATNLETLKLSDCSSLVELPS  675 (1153)
T ss_pred             -------ccccCCCCCEEECCCCCCcCcCCc--------------------------cccCCcccEEEecCCCCccccch
Confidence                   347788888888887754434442                          33456677777777766666777


Q ss_pred             cccCCCCCcEEEccCCcccccCCcccccCCCCccEEEeeccccccccCccccCCCCCCeEEeecccccccCCCccCCCcc
Q 045449          223 TIFNMSALKEISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSITNSSKLSDLELGENLFSGFIPNTIGNLRN  302 (823)
Q Consensus       223 ~~~~l~~L~~L~Ls~N~l~g~lp~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  302 (823)
                      .+.++++|+.|++++|..-+.+|..+  .+++|++|+|++|...+.+|..   .++|+.|+|++|.++ .+|..+ .+++
T Consensus       676 si~~L~~L~~L~L~~c~~L~~Lp~~i--~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l~~  748 (1153)
T PLN03210        676 SIQYLNKLEDLDMSRCENLEILPTGI--NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-RLEN  748 (1153)
T ss_pred             hhhccCCCCEEeCCCCCCcCccCCcC--CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc-cccc
Confidence            77777788888887764444677655  3777888888777655555543   346778888888776 345444 5677


Q ss_pred             cCcccccCccccCCCCccc--ccccccCCCCceEEEeecCCCCccCCccccccccccceEEecCCcceeccCccccCccc
Q 045449          303 LEFGNIADNYLTSSTPELS--FLSSLTNCKKLKVLIVTGNPLDGILPKSIGNFSLSLETILMANCSISGNIPQVVGNLSN  380 (823)
Q Consensus       303 L~~L~L~~N~l~~~~~~~~--~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~  380 (823)
                      |++|++.++..........  .+......++|+.|+|++|...+.+|.+++++ ++|+.|++++|..-+.+|..+ ++++
T Consensus       749 L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L-~~L~~L~Ls~C~~L~~LP~~~-~L~s  826 (1153)
T PLN03210        749 LDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNL-HKLEHLEIENCINLETLPTGI-NLES  826 (1153)
T ss_pred             cccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCC-CCCCEEECCCCCCcCeeCCCC-Cccc
Confidence            7777776643221100000  01112335689999999998888899999998 799999999986555777766 7899


Q ss_pred             ccEEEcccCcCCCCchhcccccCCCCEEEccCCCCCCcchHhhhcCCCCCEEEccc-CcCcccccccccCCCCCCeEecc
Q 045449          381 LLVLELGGNNLTGPIPVTFSQLQTLQAFDLTRNKLAGPITDELCHLARLHSLVLQG-NKFSGSIPSCLGNLTSVRVLYLG  459 (823)
Q Consensus       381 L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~-N~l~g~~p~~~~~l~~L~~L~Ls  459 (823)
                      |+.|+|++|..-..+|..   ..+|+.|+|++|.++ .+|.++..+++|+.|+|++ |++. .+|..+..+++|+.++++
T Consensus       827 L~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~-~l~~~~~~L~~L~~L~l~  901 (1153)
T PLN03210        827 LESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQ-RVSLNISKLKHLETVDFS  901 (1153)
T ss_pred             cCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcC-ccCcccccccCCCeeecC
Confidence            999999997655566653   367999999999998 6788999999999999998 4565 578888899999999998


Q ss_pred             CCc
Q 045449          460 LNI  462 (823)
Q Consensus       460 ~N~  462 (823)
                      ++.
T Consensus       902 ~C~  904 (1153)
T PLN03210        902 DCG  904 (1153)
T ss_pred             CCc
Confidence            874

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.91  E-value=8.9e-24  Score=263.29  Aligned_cols=340  Identities=19%  Similarity=0.237  Sum_probs=254.5

Q ss_pred             CCCCCCCCCCCEEECCCCc------CcCCCchhhhcCC-CCcEEecccccccCccCccccCCCCCCccccccceeeeccc
Q 045449           93 PSSIFNMHTLKLLDFSDNQ------LFGSLSSFIFNMS-SMTTIDLSINRLSGELPANICKIPSTLSKCKQLEELNLGFN  165 (823)
Q Consensus        93 p~~~~~l~~L~~L~Ls~N~------l~~~~p~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~~p~~~~~l~~L~~L~Ls~N  165 (823)
                      +.+|.++++|++|.+..+.      +...+|..|..++ +|+.|++.+|.++ .+|..+        ...+|++|+|++|
T Consensus       551 ~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f--------~~~~L~~L~L~~s  621 (1153)
T PLN03210        551 ENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF--------RPENLVKLQMQGS  621 (1153)
T ss_pred             HHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC--------CccCCcEEECcCc
Confidence            3456667777777775543      2234455555543 4677777666654 333322        3456667777666


Q ss_pred             eeeccCccccccchhhHHHHHhhcCCCcccCCcccCCcchhhhhccccccccCCccccccCCCCCcEEEccCCcccccCC
Q 045449          166 NLSGAIPKEIGNLTKLKEIISTITNSTVCEIPREIGNLPYLARLALATNNLVGVVPVTIFNMSALKEISLLNNSLSGSLP  245 (823)
Q Consensus       166 ~l~~~~p~~l~~l~~L~~L~~l~~n~~~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~lp  245 (823)
                      ++. .                         +|..+..+++|+.|+|++++....+| .+..+++|++|+|++|..-..+|
T Consensus       622 ~l~-~-------------------------L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp  674 (1153)
T PLN03210        622 KLE-K-------------------------LWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELP  674 (1153)
T ss_pred             ccc-c-------------------------cccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccc
Confidence            654 2                         33445567788899999887656677 48889999999999987666899


Q ss_pred             cccccCCCCccEEEeeccccccccCccccCCCCCCeEEeecccccccCCCccCCCcccCcccccCccccCCCCccccccc
Q 045449          246 SRIDLSLPNVETLNLGINSFSGTIPSSITNSSKLSDLELGENLFSGFIPNTIGNLRNLEFGNIADNYLTSSTPELSFLSS  325 (823)
Q Consensus       246 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~  325 (823)
                      ..+.. +++|+.|++++|..-+.+|..+ ++++|+.|++++|.....+|..   .++|+.|++++|.++..+      ..
T Consensus       675 ~si~~-L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~lP------~~  743 (1153)
T PLN03210        675 SSIQY-LNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIEEFP------SN  743 (1153)
T ss_pred             hhhhc-cCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCcccccc------cc
Confidence            88775 9999999999976556788766 7899999999999766666653   467899999999987643      22


Q ss_pred             ccCCCCceEEEeecCCCC---c---cCCccccccccccceEEecCCcceeccCccccCcccccEEEcccCcCCCCchhcc
Q 045449          326 LTNCKKLKVLIVTGNPLD---G---ILPKSIGNFSLSLETILMANCSISGNIPQVVGNLSNLLVLELGGNNLTGPIPVTF  399 (823)
Q Consensus       326 l~~l~~L~~L~Ls~N~l~---~---~~p~~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~  399 (823)
                      + .+++|+.|.+.++...   +   .++......+++|++|++++|...+.+|..++++++|+.|++++|..-+.+|..+
T Consensus       744 ~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~  822 (1153)
T PLN03210        744 L-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI  822 (1153)
T ss_pred             c-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC
Confidence            2 5677888888764321   1   1111222233689999999999888999999999999999999986555788766


Q ss_pred             cccCCCCEEEccCCCCCCcchHhhhcCCCCCEEEcccCcCcccccccccCCCCCCeEeccC-CccccccchhhhccCCCc
Q 045449          400 SQLQTLQAFDLTRNKLAGPITDELCHLARLHSLVLQGNKFSGSIPSCLGNLTSVRVLYLGL-NIFTSVLSSTIWNLKDIL  478 (823)
Q Consensus       400 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~  478 (823)
                       ++++|+.|+|++|..-..+|..   .++|+.|+|++|.++ .+|.++..+++|+.|+|++ |++++ +|..+..++.|+
T Consensus       823 -~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~-l~~~~~~L~~L~  896 (1153)
T PLN03210        823 -NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQR-VSLNISKLKHLE  896 (1153)
T ss_pred             -CccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCc-cCcccccccCCC
Confidence             7899999999998765555543   468999999999998 6899999999999999998 45665 777888999999


Q ss_pred             EEeccccc
Q 045449          479 FIDVSSNF  486 (823)
Q Consensus       479 ~LdLs~N~  486 (823)
                      .++++++.
T Consensus       897 ~L~l~~C~  904 (1153)
T PLN03210        897 TVDFSDCG  904 (1153)
T ss_pred             eeecCCCc
Confidence            99999884

syringae 6; Provisional

>KOG0661 consensus MAPK related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.91  E-value=1.1e-25  Score=234.79  Aligned_cols=135  Identities=27%  Similarity=0.333  Sum_probs=114.7

Q ss_pred             CeEEEEEEehHhhHHHHH-HHHHHHHHHhhcc-hhhHHH-----------------------------------------
Q 045449          641 GMEVAVKVFHQQYERALK-SFEDECEVRKRIR-HRNLVK-----------------------------------------  677 (823)
Q Consensus       641 ~~~vavK~~~~~~~~~~~-~~~~E~~~l~~l~-h~niv~-----------------------------------------  677 (823)
                      |..||||+++.......+ -=.||+..++++. |||||+                                         
T Consensus        35 ~~~VAIK~MK~Kf~s~ee~~nLREvksL~kln~hpniikL~Evi~d~~~~L~fVfE~Md~NLYqLmK~R~r~fse~~irn  114 (538)
T KOG0661|consen   35 GELVAIKKMKKKFYSWEECMNLREVKSLRKLNPHPNIIKLKEVIRDNDRILYFVFEFMDCNLYQLMKDRNRLFSESDIRN  114 (538)
T ss_pred             CceeeHHHHHhhhccHHHHHHHHHHHHHHhcCCCCcchhhHHHhhccCceEeeeHHhhhhhHHHHHhhcCCcCCHHHHHH
Confidence            566999999877644322 2358999999998 999998                                         


Q ss_pred             HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccCC-Ccccccc
Q 045449          678 IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTK-GRVSTRG  756 (823)
Q Consensus       678 ~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~  756 (823)
                      ++.|++++|.|+|++|+.|||+||||||+.....+||+|||+||.+.....   .+..+.|.+|+|||++.. +-|+.+.
T Consensus       115 im~QilqGL~hiHk~GfFHRDlKPENiLi~~~~~iKiaDFGLARev~SkpP---YTeYVSTRWYRAPEvLLrs~~Ys~pv  191 (538)
T KOG0661|consen  115 IMYQILQGLAHIHKHGFFHRDLKPENILISGNDVIKIADFGLAREVRSKPP---YTEYVSTRWYRAPEVLLRSGYYSSPV  191 (538)
T ss_pred             HHHHHHHHHHHHHhcCcccccCChhheEecccceeEecccccccccccCCC---cchhhhcccccchHHhhhccccCCch
Confidence            367999999999999999999999999999889999999999998876554   356789999999998654 5689999


Q ss_pred             ceehhhhhhccccCCCCCcCCC
Q 045449          757 DVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       757 Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      |+||+|||++|+.+-+..|.+.
T Consensus       192 D~wA~GcI~aEl~sLrPLFPG~  213 (538)
T KOG0661|consen  192 DMWAVGCIMAELYSLRPLFPGA  213 (538)
T ss_pred             HHHHHHHHHHHHHHhcccCCCC
Confidence            9999999999988777766554

>KOG1026 consensus Nerve growth factor receptor TRKA and related tyrosine kinases [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.91  E-value=3.3e-25  Score=248.12  Aligned_cols=181  Identities=24%  Similarity=0.267  Sum_probs=146.2

Q ss_pred             CeEEEEEEehHhhHH-HHHHHHHHHHHHhhcchhhHHH------------------------------------------
Q 045449          641 GMEVAVKVFHQQYER-ALKSFEDECEVRKRIRHRNLVK------------------------------------------  677 (823)
Q Consensus       641 ~~~vavK~~~~~~~~-~~~~~~~E~~~l~~l~h~niv~------------------------------------------  677 (823)
                      .+.||||.+++..+. ..++|++|+++++.++|||||+                                          
T Consensus       516 ~~lVAVK~LKd~a~~~~~~dF~REaeLla~l~H~nIVrLlGVC~~~~P~~MvFEYm~~GDL~eFLra~sP~a~~~~~g~~  595 (774)
T KOG1026|consen  516 EQLVAVKALKDKAENQARQDFRREAELLAELQHPNIVRLLGVCREGDPLCMVFEYMDHGDLHEFLRARSPKADKLASGQD  595 (774)
T ss_pred             ceehhHhhhcccccHHHHHHHHHHHHHHHhccCCCeEEEEEEEccCCeeEEEEEecccccHHHHHHhhCCccccccCCCC
Confidence            345999999877654 7899999999999999999999                                          


Q ss_pred             ------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCccc
Q 045449          678 ------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPE  745 (823)
Q Consensus       678 ------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE  745 (823)
                                  +++|++++|.|+.++.+|||||-..|+|+.+...+||+|||++|.+...+.+.......-..+|||||
T Consensus       596 ~~~~L~~~q~L~iA~QIAaGM~YLs~~~FVHRDLATRNCLVge~l~VKIsDfGLsRdiYssDYYk~~~~t~lPIRWMppE  675 (774)
T KOG1026|consen  596 TPPPLSTSQFLHIATQIAAGMEYLSSHHFVHRDLATRNCLVGENLVVKISDFGLSRDIYSSDYYKVRGNTLLPIRWMPPE  675 (774)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHhCcccccchhhhhceeccceEEEecccccchhhhhhhhhcccCCceeeeecCCHH
Confidence                        35688888999999999999999999999999999999999999887777665544455678999999


Q ss_pred             ccCCCccccccceehhhhhhccccC-CCCCcCCCcccccccccccCCcccccccCCCcccccccccccccccccCCCC
Q 045449          746 YGTKGRVSTRGDVCSFGIISGGKET-RSMTVGETCTPVRESKYEVHPATTTIMEHPLPRVGEVMDVDRGKARIQGKPI  822 (823)
Q Consensus       746 ~~~~~~~~~~~Dv~S~Gvv~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  822 (823)
                      .+..++|+++|||||||||+||+.+ |..|+.+...+......... ..-..++.++..+.++|.-+..+.+-+||-.
T Consensus       676 sIly~kFTteSDVWs~GVvLWEIFsyG~QPy~glSn~EVIe~i~~g-~lL~~Pe~CP~~vY~LM~~CW~~~P~~RPsF  752 (774)
T KOG1026|consen  676 SILYGKFTTESDVWSFGVVLWEIFSYGKQPYYGLSNQEVIECIRAG-QLLSCPENCPTEVYSLMLECWNENPKRRPSF  752 (774)
T ss_pred             HhhcCcccchhhhhhhhhhhhhhhccccCcccccchHHHHHHHHcC-CcccCCCCCCHHHHHHHHHHhhcCcccCCCH
Confidence            9999999999999999999999875 77888776443222221111 1133456777888888888888877777654

>KOG0594 consensus Protein kinase PCTAIRE and related kinases [General function prediction only]

Probab=99.91  E-value=1.3e-25  Score=229.23  Aligned_cols=138  Identities=32%  Similarity=0.373  Sum_probs=118.8

Q ss_pred             CeEEEEEEehHhhH--HHHHHHHHHHHHHhhcchhh-HHH----------------------------------------
Q 045449          641 GMEVAVKVFHQQYE--RALKSFEDECEVRKRIRHRN-LVK----------------------------------------  677 (823)
Q Consensus       641 ~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~n-iv~----------------------------------------  677 (823)
                      |..||+|.++...+  .......+|+.++++++|+| ||+                                        
T Consensus        36 g~~VALKkirl~~~~EG~P~taiREisllk~L~~~~~iv~L~dv~~~~~~~~~~~~l~lvfe~~d~DL~~ymd~~~~~~~  115 (323)
T KOG0594|consen   36 GKFVALKKIRLEFEEEGVPSTAIREISLLKRLSHANHIVRLHDVIHTSNNHRGIGKLYLVFEFLDRDLKKYMDSLPKKPQ  115 (323)
T ss_pred             CCEEEEEEEeccccccCCCchhhHHHHHHHHhCCCcceEEEEeeeeecccccccceEEEEEEeecccHHHHHHhcccccc
Confidence            67899999976543  24456789999999999999 876                                        


Q ss_pred             ---------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccC
Q 045449          678 ---------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGT  748 (823)
Q Consensus       678 ---------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~  748 (823)
                               ++.|++.+|+|+|+++|+|||+||+|||++.+|.+||+|||+|+...-..  ...++.++|.+|+|||++.
T Consensus       116 g~~~~~ik~~m~Qll~gl~~~H~~~IlHRDLKPQNlLi~~~G~lKlaDFGlAra~~ip~--~~yt~evvTlWYRaPEvLl  193 (323)
T KOG0594|consen  116 GLPPRLIKSFMRQLLRGLAFLHSHGILHRDLKPQNLLISSSGVLKLADFGLARAFSIPM--RTYTPEVVTLWYRAPEVLL  193 (323)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCeecccCCcceEEECCCCcEeeeccchHHHhcCCc--ccccccEEEeeccCHHHhc
Confidence                     46799999999999999999999999999999999999999999665332  2356678999999999988


Q ss_pred             CC-ccccccceehhhhhhccccCCCCCcCCCcc
Q 045449          749 KG-RVSTRGDVCSFGIISGGKETRSMTVGETCT  780 (823)
Q Consensus       749 ~~-~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~~~  780 (823)
                      +. .|+...||||+||+++||.+++..|.+..+
T Consensus       194 Gs~~Ys~~vDiWs~GcIfaEm~~~~~LFpG~se  226 (323)
T KOG0594|consen  194 GSTSYSTSVDIWSLGCIFAEMFTRRPLFPGDSE  226 (323)
T ss_pred             CCCcCCCCcchHhHHHHHHHHHhCCCCCCCCcH
Confidence            86 699999999999999999999988877644

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.91  E-value=3.7e-24  Score=247.66  Aligned_cols=263  Identities=23%  Similarity=0.296  Sum_probs=212.7

Q ss_pred             hhhhccccccccCCccccccCCCCCcEEEccCCcccccCCcccccCCCCccEEEeeccccccccCccccCCCCCCeEEee
Q 045449          206 LARLALATNNLVGVVPVTIFNMSALKEISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSITNSSKLSDLELG  285 (823)
Q Consensus       206 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~lp~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls  285 (823)
                      -..|+|+.|+|+ .+|..+.  ++|+.|++++|+|+ .+|..    +++|++|+|++|+|+. +|..   .++|+.|+++
T Consensus       203 ~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~l----p~~Lk~LdLs~N~Lts-LP~l---p~sL~~L~Ls  270 (788)
T PRK15387        203 NAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPAL----PPELRTLEVSGNQLTS-LPVL---PPGLLELSIF  270 (788)
T ss_pred             CcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCCC----CCCCcEEEecCCccCc-ccCc---ccccceeecc
Confidence            457899999999 5677665  48999999999998 67752    6899999999999994 5653   4689999999


Q ss_pred             cccccccCCCccCCCcccCcccccCccccCCCCcccccccccCCCCceEEEeecCCCCccCCccccccccccceEEecCC
Q 045449          286 ENLFSGFIPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGILPKSIGNFSLSLETILMANC  365 (823)
Q Consensus       286 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N  365 (823)
                      +|.++. +|..+   ++|+.|++++|+++..+.         ..++|+.|++++|+|++. |.    ++.+|+.|++++|
T Consensus       271 ~N~L~~-Lp~lp---~~L~~L~Ls~N~Lt~LP~---------~p~~L~~LdLS~N~L~~L-p~----lp~~L~~L~Ls~N  332 (788)
T PRK15387        271 SNPLTH-LPALP---SGLCKLWIFGNQLTSLPV---------LPPGLQELSVSDNQLASL-PA----LPSELCKLWAYNN  332 (788)
T ss_pred             CCchhh-hhhch---hhcCEEECcCCccccccc---------cccccceeECCCCccccC-CC----CcccccccccccC
Confidence            999985 44433   568889999999987632         236799999999999964 43    2357889999999


Q ss_pred             cceeccCccccCcccccEEEcccCcCCCCchhcccccCCCCEEEccCCCCCCcchHhhhcCCCCCEEEcccCcCcccccc
Q 045449          366 SISGNIPQVVGNLSNLLVLELGGNNLTGPIPVTFSQLQTLQAFDLTRNKLAGPITDELCHLARLHSLVLQGNKFSGSIPS  445 (823)
Q Consensus       366 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~  445 (823)
                      +|++ +|..   ..+|++|+|++|+|++ +|..   ..+|+.|++++|+|++ +|..   ..+|+.|+|++|+|++ +|.
T Consensus       333 ~L~~-LP~l---p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt~-LP~  399 (788)
T PRK15387        333 QLTS-LPTL---PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTS-LPV  399 (788)
T ss_pred             cccc-cccc---ccccceEecCCCccCC-CCCC---Ccccceehhhcccccc-Cccc---ccccceEEecCCcccC-CCC
Confidence            9985 5542   2589999999999995 5643   3578899999999995 5653   3579999999999995 665


Q ss_pred             cccCCCCCCeEeccCCccccccchhhhccCCCcEEeccccccccccCccccCCCCCcEEEcccCCCCCCCCCcc
Q 045449          446 CLGNLTSVRVLYLGLNIFTSVLSSTIWNLKDILFIDVSSNFLDGPLSLDIGNLKVVIGLDFSRNNLSGDIPITI  519 (823)
Q Consensus       446 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~ip~~~  519 (823)
                      ..   ++|+.|++++|+|++ +|...   ..|+.|++++|+|+ .+|..+.+++.|+.|+|++|+|+|.+|..+
T Consensus       400 l~---s~L~~LdLS~N~Lss-IP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L  465 (788)
T PRK15387        400 LP---SELKELMVSGNRLTS-LPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL  465 (788)
T ss_pred             cc---cCCCEEEccCCcCCC-CCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence            43   579999999999997 56543   46889999999998 789999999999999999999999888876

>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]

Probab=99.91  E-value=3.2e-24  Score=223.72  Aligned_cols=132  Identities=32%  Similarity=0.462  Sum_probs=107.9

Q ss_pred             CeEEEEEEehHhhHHHHHHHHHHHHHHhh--cchhhHHHH----------------------------------------
Q 045449          641 GMEVAVKVFHQQYERALKSFEDECEVRKR--IRHRNLVKI----------------------------------------  678 (823)
Q Consensus       641 ~~~vavK~~~~~~~~~~~~~~~E~~~l~~--l~h~niv~~----------------------------------------  678 (823)
                      ++.||||++.....   +.|..|-+|.+-  ++|+||+++                                        
T Consensus       233 ~~~VAVKifp~~~k---qs~~~Ek~Iy~lp~m~h~nIl~Fi~~ekr~t~~~~eywLVt~fh~kGsL~dyL~~ntisw~~~  309 (534)
T KOG3653|consen  233 NRLVAVKIFPEQEK---QSFQNEKNIYSLPGMKHENILQFIGAEKRGTADRMEYWLVTEFHPKGSLCDYLKANTISWNSL  309 (534)
T ss_pred             CceeEEEecCHHHH---HHHHhHHHHHhccCccchhHHHhhchhccCCccccceeEEeeeccCCcHHHHHHhccccHHHH
Confidence            67899999976543   678888888764  589999993                                        


Q ss_pred             ------HHHHHHHhhhc------CCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccc
Q 045449          679 ------ISSSLEYLHFG------HSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEY  746 (823)
Q Consensus       679 ------~~~~l~~L~~~------h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~  746 (823)
                            ++++++|||..      |+++|+|||||+.|||+..|+++.|+|||+|..+............+||.+|||||+
T Consensus       310 cria~SmarGLa~LHee~p~~d~~Kp~IaHRDlkSkNVLvK~DlTccIaDFGLAl~~~p~~~~~d~~~qVGT~RYMAPEv  389 (534)
T KOG3653|consen  310 CRIAESMARGLAHLHEELPRGDHHKPPIAHRDLKSKNVLVKNDLTCCIADFGLALRLEPGKPQGDTHGQVGTRRYMAPEV  389 (534)
T ss_pred             HHHHHHHHHHHHHhcccCCcCCCCCCccccccccccceEEccCCcEEeeccceeEEecCCCCCcchhhhhhhhhhcCHHH
Confidence                  47888888854      567899999999999999999999999999998876655555566899999999999


Q ss_pred             cCCCc-c-----ccccceehhhhhhccccCCCCCc
Q 045449          747 GTKGR-V-----STRGDVCSFGIISGGKETRSMTV  775 (823)
Q Consensus       747 ~~~~~-~-----~~~~Dv~S~Gvv~~~~~~~~~~~  775 (823)
                      +.+.. .     -.+.||||+|.|+||+..+-...
T Consensus       390 LEgainl~d~~Afkr~DvYamgLVLWEi~SRC~~~  424 (534)
T KOG3653|consen  390 LEGAINLQDRDAFKRIDVYAMGLVLWEIASRCTDA  424 (534)
T ss_pred             HhhhcccccHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence            87643 1     23589999999999987765433

>KOG0201 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.91  E-value=1.4e-24  Score=224.91  Aligned_cols=176  Identities=22%  Similarity=0.269  Sum_probs=137.9

Q ss_pred             CeEEEEEEehHhh-HHHHHHHHHHHHHHhhcchhhHHHH----------------------------------------H
Q 045449          641 GMEVAVKVFHQQY-ERALKSFEDECEVRKRIRHRNLVKI----------------------------------------I  679 (823)
Q Consensus       641 ~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~~----------------------------------------~  679 (823)
                      ++.||+|++..+. +..+++..+|+.++..++++||.++                                        +
T Consensus        38 ~k~vAiKii~Le~~~deIediqqei~~Ls~~~~~~it~yygsyl~g~~LwiiMey~~gGsv~~lL~~~~~~~E~~i~~il  117 (467)
T KOG0201|consen   38 KKVVAIKIIDLEEAEDEIEDIQQEISVLSQCDSPNITEYYGSYLKGTKLWIIMEYCGGGSVLDLLKSGNILDEFEIAVIL  117 (467)
T ss_pred             cceEEEEEechhhcchhhHHHHHHHHHHHhcCcchHHhhhhheeecccHHHHHHHhcCcchhhhhccCCCCccceeeeeh
Confidence            5789999998665 4556889999999999999999882                                        4


Q ss_pred             HHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccCCCcccccccee
Q 045449          680 SSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVC  759 (823)
Q Consensus       680 ~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~  759 (823)
                      .+.+.+|.|+|.++.+|||||+.||++..+|.+|++|||++..+.....  ...+++|||.|||||++....|+.|+|||
T Consensus       118 re~l~~l~ylH~~~kiHrDIKaanil~s~~g~vkl~DfgVa~ql~~~~~--rr~tfvGTPfwMAPEVI~~~~Y~~KADIW  195 (467)
T KOG0201|consen  118 REVLKGLDYLHSEKKIHRDIKAANILLSESGDVKLADFGVAGQLTNTVK--RRKTFVGTPFWMAPEVIKQSGYDTKADIW  195 (467)
T ss_pred             HHHHHHhhhhhhcceecccccccceeEeccCcEEEEecceeeeeechhh--ccccccccccccchhhhccccccchhhhh
Confidence            5778899999999999999999999999999999999999988754332  23678999999999999988999999999


Q ss_pred             hhhhhhccccCCCCCcCCCcccccccccccCCcc-cccccCCCcccccccccccccccccCC
Q 045449          760 SFGIISGGKETRSMTVGETCTPVRESKYEVHPAT-TTIMEHPLPRVGEVMDVDRGKARIQGK  820 (823)
Q Consensus       760 S~Gvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  820 (823)
                      |+|+.++||.+|..|+.+... ++ -.+..+... +....+.-+.++|.+..+-.+.+-.||
T Consensus       196 SLGITaiEla~GePP~s~~hP-mr-vlflIpk~~PP~L~~~~S~~~kEFV~~CL~k~P~~Rp  255 (467)
T KOG0201|consen  196 SLGITAIELAKGEPPHSKLHP-MR-VLFLIPKSAPPRLDGDFSPPFKEFVEACLDKNPEFRP  255 (467)
T ss_pred             hhhHHHHHHhcCCCCCcccCc-ce-EEEeccCCCCCccccccCHHHHHHHHHHhhcCcccCc
Confidence            999999999999999977543 21 111111111 222234455677777776666554444

>KOG0580 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.91  E-value=2.2e-25  Score=213.36  Aligned_cols=148  Identities=24%  Similarity=0.341  Sum_probs=128.8

Q ss_pred             hccCCccceeeccC------------CeEEEEEEehHhh---HHHHHHHHHHHHHHhhcchhhHHH--------------
Q 045449          627 TDRFSENNLIGIGN------------GMEVAVKVFHQQY---ERALKSFEDECEVRKRIRHRNLVK--------------  677 (823)
Q Consensus       627 t~~f~~~~~lg~g~------------~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~--------------  677 (823)
                      .++|+.++.+|+|.            +..||+|++.+..   .+..+++.+|++|-+.++||||.+              
T Consensus        21 l~dfeigr~LgkgkFG~vYlarekks~~IvalKVlfKsqi~~~~v~~qlrREiEIqs~L~hpnilrlY~~fhd~~riyLi  100 (281)
T KOG0580|consen   21 LDDFEIGRPLGKGKFGNVYLAREKKSLFIVALKVLFKSQILKTQVEHQLRREIEIQSHLRHPNILRLYGYFHDSKRIYLI  100 (281)
T ss_pred             hhhccccccccCCccccEeEeeeccCCcEEEEeeeeHHHHHHhcchhhhhheeEeecccCCccHHhhhhheeccceeEEE
Confidence            46778888888875            4569999997554   334578999999999999999999              


Q ss_pred             ----------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCcc
Q 045449          678 ----------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQL  729 (823)
Q Consensus       678 ----------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~  729 (823)
                                                  ++.|++.||.|+|.++|+||||||+|+|++.++..|++|||-+.....    
T Consensus       101 lEya~~gel~k~L~~~~~~~f~e~~~a~Yi~q~A~Al~y~h~k~VIhRdiKpenlLlg~~~~lkiAdfGwsV~~p~----  176 (281)
T KOG0580|consen  101 LEYAPRGELYKDLQEGRMKRFDEQRAATYIKQLANALLYCHLKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPS----  176 (281)
T ss_pred             EEecCCchHHHHHHhcccccccccchhHHHHHHHHHHHHhccCCcccCCCCHHHhccCCCCCeeccCCCceeecCC----
Confidence                                        468999999999999999999999999999999999999998876432    


Q ss_pred             ccccccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCC
Q 045449          730 SKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       730 ~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      ....+.+||..|.|||.+.+..++..+|+|++||++||++.|..||...
T Consensus       177 ~kR~tlcgt~dyl~pEmv~~~~hd~~Vd~w~lgvl~yeflvg~ppFes~  225 (281)
T KOG0580|consen  177 NKRKTLCGTLDYLPPEMVEGRGHDKFVDLWSLGVLCYEFLVGLPPFESQ  225 (281)
T ss_pred             CCceeeecccccCCHhhcCCCCccchhhHHHHHHHHHHHHhcCCchhhh
Confidence            2345678999999999999999999999999999999999999999654

>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]

Probab=99.90  E-value=7.1e-25  Score=229.58  Aligned_cols=159  Identities=25%  Similarity=0.441  Sum_probs=133.7

Q ss_pred             cceeeccC------------CeEEEEEEehHhh--HHHHHHHHHHHHHHhhcchhhHHH---------------------
Q 045449          633 NNLIGIGN------------GMEVAVKVFHQQY--ERALKSFEDECEVRKRIRHRNLVK---------------------  677 (823)
Q Consensus       633 ~~~lg~g~------------~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~---------------------  677 (823)
                      ++++|.|.            |+.||||++.+..  .+...+.+.|++|+..++||.||.                     
T Consensus       569 devLGSGQFG~VYgg~hRktGrdVAvKvIdKlrFp~kqesqlR~EVaILq~l~HPGiV~le~M~ET~ervFVVMEKl~GD  648 (888)
T KOG4236|consen  569 DEVLGSGQFGTVYGGKHRKTGRDVAVKVIDKLRFPTKQESQLRNEVAILQNLHHPGIVNLECMFETPERVFVVMEKLHGD  648 (888)
T ss_pred             HhhccCCcceeeecceecccCceeeeeeeecccCCCchHHHHHHHHHHHHhcCCCCeeEEEEeecCCceEEEEehhhcch
Confidence            46777663            7889999997654  344478999999999999999997                     


Q ss_pred             --------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCC---CcEEEeecccccccCCCCccccccc
Q 045449          678 --------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDED---MVAHISDFGIAKLLSGEDQLSKQTQ  734 (823)
Q Consensus       678 --------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~---~~~kl~DfGla~~~~~~~~~~~~~~  734 (823)
                                          +++|++.+|.|+|-.+|||+|+||+|||+...   -.+||||||+||.+.+..   ....
T Consensus       649 MLEMILSsEkgRL~er~TkFlvtQIL~ALr~LH~knIvHCDLKPENVLLas~~~FPQvKlCDFGfARiIgEks---FRrs  725 (888)
T KOG4236|consen  649 MLEMILSSEKGRLPERITKFLVTQILVALRYLHFKNIVHCDLKPENVLLASASPFPQVKLCDFGFARIIGEKS---FRRS  725 (888)
T ss_pred             HHHHHHHhhcccchHHHHHHHHHHHHHHHHHhhhcceeeccCCchheeeccCCCCCceeeccccceeecchhh---hhhh
Confidence                                47899999999999999999999999999633   378999999999986543   2346


Q ss_pred             cccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCC---cccccccccccCCccc
Q 045449          735 TLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGET---CTPVRESKYEVHPATT  794 (823)
Q Consensus       735 ~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~  794 (823)
                      .+|||.|.|||++....|...-|+||.|||+|.-+.|..||.+.   .++++...+.++|...
T Consensus       726 VVGTPAYLaPEVLrnkGyNrSLDMWSVGVIiYVsLSGTFPFNEdEdIndQIQNAaFMyPp~PW  788 (888)
T KOG4236|consen  726 VVGTPAYLAPEVLRNKGYNRSLDMWSVGVIIYVSLSGTFPFNEDEDINDQIQNAAFMYPPNPW  788 (888)
T ss_pred             hcCCccccCHHHHhhccccccccceeeeEEEEEEecccccCCCccchhHHhhccccccCCCch
Confidence            78999999999999999999999999999999999999999664   4667777766666543

>KOG0197 consensus Tyrosine kinases [Signal transduction mechanisms]

Probab=99.90  E-value=3.8e-25  Score=236.40  Aligned_cols=172  Identities=28%  Similarity=0.340  Sum_probs=134.4

Q ss_pred             eEEEEEEehHhhHHHHHHHHHHHHHHhhcchhhHHH------------------------------------------HH
Q 045449          642 MEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVK------------------------------------------II  679 (823)
Q Consensus       642 ~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~------------------------------------------~~  679 (823)
                      ..||||.++... ...++|.+|+++|++++|++||+                                          +.
T Consensus       231 ~~vavk~ik~~~-m~~~~f~~Ea~iMk~L~H~~lV~l~gV~~~~~piyIVtE~m~~GsLl~yLr~~~~~~l~~~~Ll~~a  309 (468)
T KOG0197|consen  231 TKVAVKTIKEGS-MSPEAFLREAQIMKKLRHEKLVKLYGVCTKQEPIYIVTEYMPKGSLLDYLRTREGGLLNLPQLLDFA  309 (468)
T ss_pred             CcccceEEeccc-cChhHHHHHHHHHHhCcccCeEEEEEEEecCCceEEEEEecccCcHHHHhhhcCCCccchHHHHHHH
Confidence            369999997653 33478999999999999999999                                          36


Q ss_pred             HHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccCCCcccccccee
Q 045449          680 SSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVC  759 (823)
Q Consensus       680 ~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~  759 (823)
                      +|++++|+|+.++++|||||-+.|||++++..+||+|||+||... ++.+.......-...|.|||.+..+.++.|||||
T Consensus       310 ~qIaeGM~YLes~~~IHRDLAARNiLV~~~~~vKIsDFGLAr~~~-d~~Y~~~~~~kfPIkWtAPEa~~~~~FS~kSDVW  388 (468)
T KOG0197|consen  310 AQIAEGMAYLESKNYIHRDLAARNILVDEDLVVKISDFGLARLIG-DDEYTASEGGKFPIKWTAPEALNYGKFSSKSDVW  388 (468)
T ss_pred             HHHHHHHHHHHhCCccchhhhhhheeeccCceEEEcccccccccC-CCceeecCCCCCCceecCHHHHhhCCccccccee
Confidence            899999999999999999999999999999999999999999543 3333333333446789999999999999999999


Q ss_pred             hhhhhhccccC-CCCCcCCCc-----ccccccccccCCcccccccCCCcccccccccccccccccCCC
Q 045449          760 SFGIISGGKET-RSMTVGETC-----TPVRESKYEVHPATTTIMEHPLPRVGEVMDVDRGKARIQGKP  821 (823)
Q Consensus       760 S~Gvv~~~~~~-~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  821 (823)
                      ||||+++|+.| |+.|+.+..     +.+..+...      +.++.+.+.+-++|..+....+-+||.
T Consensus       389 SFGVlL~E~fT~G~~py~~msn~ev~~~le~GyRl------p~P~~CP~~vY~lM~~CW~~~P~~RPt  450 (468)
T KOG0197|consen  389 SFGVLLWELFTYGRVPYPGMSNEEVLELLERGYRL------PRPEGCPDEVYELMKSCWHEDPEDRPT  450 (468)
T ss_pred             ehhhhHHHHhccCCCCCCCCCHHHHHHHHhccCcC------CCCCCCCHHHHHHHHHHhhCCcccCCC
Confidence            99999999987 566665543     223333222      223456677777777777776666664

>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]

Probab=99.90  E-value=5.7e-25  Score=240.92  Aligned_cols=206  Identities=20%  Similarity=0.289  Sum_probs=148.6

Q ss_pred             ccccccCHHHHHHHhccCC---------ccceeeccC---------------CeEEEEEEehHhh-HHHHHHHHHHHHHH
Q 045449          613 QAIRRFSYHELLRATDRFS---------ENNLIGIGN---------------GMEVAVKVFHQQY-ERALKSFEDECEVR  667 (823)
Q Consensus       613 ~~~~~~~~~~l~~at~~f~---------~~~~lg~g~---------------~~~vavK~~~~~~-~~~~~~~~~E~~~l  667 (823)
                      ..+..++|+|=-+|...|.         ++++||.|.               ...||||.++..+ ++...+|..|+.||
T Consensus       605 ~YiDP~TYEDPnqAvreFakEId~s~i~Ie~VIGaGEFGEVc~GrLk~pgkre~~VAIKTLK~GytekqrrdFL~EAsIM  684 (996)
T KOG0196|consen  605 TYIDPHTYEDPNQAVREFAKEIDPSCVKIEKVIGAGEFGEVCSGRLKLPGKREITVAIKTLKAGYTEKQRRDFLSEASIM  684 (996)
T ss_pred             eecCCccccCccHHHHHhhhhcChhheEEEEEEecccccceecccccCCCCcceeEEEeeeccCccHHHHhhhhhhhhhc
Confidence            3456788888877777665         357888874               2349999998776 56678999999999


Q ss_pred             hhcchhhHHH-----------------------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEe
Q 045449          668 KRIRHRNLVK-----------------------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLL  706 (823)
Q Consensus       668 ~~l~h~niv~-----------------------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl  706 (823)
                      .++.||||++                                         ++..+.+++.|+.+.++|||||-..|||+
T Consensus       685 GQFdHPNIIrLEGVVTks~PvMIiTEyMENGsLDsFLR~~DGqftviQLVgMLrGIAsGMkYLsdm~YVHRDLAARNILV  764 (996)
T KOG0196|consen  685 GQFDHPNIIRLEGVVTKSKPVMIITEYMENGSLDSFLRQNDGQFTVIQLVGMLRGIASGMKYLSDMNYVHRDLAARNILV  764 (996)
T ss_pred             ccCCCCcEEEEEEEEecCceeEEEhhhhhCCcHHHHHhhcCCceEeehHHHHHHHHHHHhHHHhhcCchhhhhhhhheee
Confidence            9999999998                                         12345567778889999999999999999


Q ss_pred             CCCCcEEEeecccccccCCCCcccccccccc--CCCcCcccccCCCccccccceehhhhhhcccc-CCCCCcCCCccccc
Q 045449          707 DEDMVAHISDFGIAKLLSGEDQLSKQTQTLA--TIGYMAPEYGTKGRVSTRGDVCSFGIISGGKE-TRSMTVGETCTPVR  783 (823)
Q Consensus       707 ~~~~~~kl~DfGla~~~~~~~~~~~~~~~~g--t~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~-~~~~~~~~~~~~~~  783 (823)
                      +.+..+||+|||++|.+..+.. ...++.-|  ..+|.|||.+...+++..+||||||||+||.+ +|+.|+-+...+..
T Consensus       765 NsnLvCKVsDFGLSRvledd~~-~~ytt~GGKIPiRWTAPEAIa~RKFTsASDVWSyGIVmWEVmSyGERPYWdmSNQdV  843 (996)
T KOG0196|consen  765 NSNLVCKVSDFGLSRVLEDDPE-AAYTTLGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMSYGERPYWDMSNQDV  843 (996)
T ss_pred             ccceEEEeccccceeecccCCC-ccccccCCccceeecChhHhhhcccCchhhccccceEEEEecccCCCcccccchHHH
Confidence            9999999999999998754432 22222223  57899999999999999999999999999965 57778766544422


Q ss_pred             ccccccCCcccccccCCCcccccccccccccccccCC
Q 045449          784 ESKYEVHPATTTIMEHPLPRVGEVMDVDRGKARIQGK  820 (823)
Q Consensus       784 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  820 (823)
                      ....+.-...+ .+.++...+-++|.-...+.|-.||
T Consensus       844 IkaIe~gyRLP-pPmDCP~aL~qLMldCWqkdR~~RP  879 (996)
T KOG0196|consen  844 IKAIEQGYRLP-PPMDCPAALYQLMLDCWQKDRNRRP  879 (996)
T ss_pred             HHHHHhccCCC-CCCCCcHHHHHHHHHHHHHHhhcCC
Confidence            22111111111 1234444555555555555555444

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.90  E-value=2.5e-25  Score=226.69  Aligned_cols=367  Identities=19%  Similarity=0.216  Sum_probs=231.5

Q ss_pred             CCCEEECCCCcCcCCCchhhhcCCCCcEEecccccccCccCccccCCCCCCccccccceeeecc-ceeeccCccccccch
Q 045449          101 TLKLLDFSDNQLFGSLSSFIFNMSSMTTIDLSINRLSGELPANICKIPSTLSKCKQLEELNLGF-NNLSGAIPKEIGNLT  179 (823)
Q Consensus       101 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~p~~l~~l~  179 (823)
                      .-..++|..|.|+.+.|.+|+.+.+|+.||||+|.|+..-|+.|       .++++|-.|-+.+ |+|+ .+|       
T Consensus        68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF-------~GL~~l~~Lvlyg~NkI~-~l~-------  132 (498)
T KOG4237|consen   68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAF-------KGLASLLSLVLYGNNKIT-DLP-------  132 (498)
T ss_pred             cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhh-------hhhHhhhHHHhhcCCchh-hhh-------
Confidence            34677888888877777777777777777777776664333333       5555555554444 5555 222       


Q ss_pred             hhHHHHHhhcCCCcccCCcccCCcchhhhhccccccccCCccccccCCCCCcEEEccCCcccccCCcccccCCCCccEEE
Q 045449          180 KLKEIISTITNSTVCEIPREIGNLPYLARLALATNNLVGVVPVTIFNMSALKEISLLNNSLSGSLPSRIDLSLPNVETLN  259 (823)
Q Consensus       180 ~L~~L~~l~~n~~~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~lp~~~~~~l~~L~~L~  259 (823)
                                       -+.|++|.+|+.|.+.-|++.....+.|..+++|..|.+.+|.+. .++...+..+..++.+.
T Consensus       133 -----------------k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlh  194 (498)
T KOG4237|consen  133 -----------------KGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLH  194 (498)
T ss_pred             -----------------hhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHh
Confidence                             234556666666667777777666667777777777777777766 66665555566666666


Q ss_pred             eecccc------------ccccCccccCCCCCCeEEeecccccccCCCccCCC-cccCcccccCccccCCCCcccccccc
Q 045449          260 LGINSF------------SGTIPSSITNSSKLSDLELGENLFSGFIPNTIGNL-RNLEFGNIADNYLTSSTPELSFLSSL  326 (823)
Q Consensus       260 Ls~N~l------------~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~~~l  326 (823)
                      +..|.+            ....|..++.+.......+.++++.-+.+..|..- ..+..=..+.....++.|    ...|
T Consensus       195 lA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP----~~cf  270 (498)
T KOG4237|consen  195 LAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICP----AKCF  270 (498)
T ss_pred             hhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcCh----HHHH
Confidence            666652            22344455555555555566666654444444321 112111112222233322    2348


Q ss_pred             cCCCCceEEEeecCCCCccCCccccccccccceEEecCCcceeccCccccCcccccEEEcccCcCCCCchhcccccCCCC
Q 045449          327 TNCKKLKVLIVTGNPLDGILPKSIGNFSLSLETILMANCSISGNIPQVVGNLSNLLVLELGGNNLTGPIPVTFSQLQTLQ  406 (823)
Q Consensus       327 ~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~  406 (823)
                      ..+++|+.|+|++|+++++-+.+|.+. ..+++|+|..|+|...-...|.++.+|++|+|.+|+|+-..|..|..+.+|.
T Consensus       271 ~~L~~L~~lnlsnN~i~~i~~~aFe~~-a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~  349 (498)
T KOG4237|consen  271 KKLPNLRKLNLSNNKITRIEDGAFEGA-AELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLS  349 (498)
T ss_pred             hhcccceEeccCCCccchhhhhhhcch-hhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceee
Confidence            889999999999999999999999988 7899999999999988888899999999999999999988888999999999


Q ss_pred             EEEccCCCCCCc-----chHhh-----------hcCCCCCEEEcccCcCc---cccccccc---------CCCCCCe-Ee
Q 045449          407 AFDLTRNKLAGP-----ITDEL-----------CHLARLHSLVLQGNKFS---GSIPSCLG---------NLTSVRV-LY  457 (823)
Q Consensus       407 ~L~Ls~N~l~~~-----~p~~~-----------~~l~~L~~L~Ls~N~l~---g~~p~~~~---------~l~~L~~-L~  457 (823)
                      .|+|-.|.+--.     .-+|+           .+...++.++++.+.+.   -..|++.+         .++-+.+ ..
T Consensus       350 ~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvR  429 (498)
T KOG4237|consen  350 TLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPRCQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVR  429 (498)
T ss_pred             eeehccCcccCccchHHHHHHHhhCCCCCCCCCCCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHh
Confidence            999988887411     11111           12234556666666543   12232222         1222322 22


Q ss_pred             ccCCccccccchhhhccCCCcEEeccccccccccCccccCCCCCcEEEcccCCCC
Q 045449          458 LGLNIFTSVLSSTIWNLKDILFIDVSSNFLDGPLSLDIGNLKVVIGLDFSRNNLS  512 (823)
Q Consensus       458 Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~ls~N~l~  512 (823)
                      -|++.+. .+|..+.  ..-+.|.+.+|.++ .+|.+  .+..| .+|+|+|+++
T Consensus       430 cSnk~lk-~lp~~iP--~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~  477 (498)
T KOG4237|consen  430 CSNKLLK-LLPRGIP--VDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRIS  477 (498)
T ss_pred             hcccchh-hcCCCCC--chhHHHhcccchhc-ccCHH--HHhhh-hcccccCcee
Confidence            3333333 2333221  23456888999988 56665  66777 8999999987

>cd05628 STKc_NDR1 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 1

Probab=99.90  E-value=4.4e-24  Score=235.66  Aligned_cols=151  Identities=24%  Similarity=0.296  Sum_probs=124.9

Q ss_pred             ccCCccceeeccC------------CeEEEEEEehHhh---HHHHHHHHHHHHHHhhcchhhHHH---------------
Q 045449          628 DRFSENNLIGIGN------------GMEVAVKVFHQQY---ERALKSFEDECEVRKRIRHRNLVK---------------  677 (823)
Q Consensus       628 ~~f~~~~~lg~g~------------~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~---------------  677 (823)
                      ++|+..+.||.|+            ++.||||++....   ......+.+|++++.+++|++|++               
T Consensus         1 ~~y~~~~~LG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~~~~~~iv~~~~~~~~~~~~~lv~   80 (363)
T cd05628           1 EDFESLKVIGRGAFGEVRLVQKKDTGHVYAMKILRKADMLEKEQVGHIRAERDILVEADSLWVVKMFYSFQDKLNLYLIM   80 (363)
T ss_pred             CCceEeEEEEeCCCEEEEEEEECCCCCEEEEEEEEHHHHHHhhHHHHHHHHHHHHHhCCCCCcceEEEEEecCCeEEEEE
Confidence            3567777888775            5679999997543   234467889999999999999998               


Q ss_pred             -------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCcc---
Q 045449          678 -------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQL---  729 (823)
Q Consensus       678 -------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~---  729 (823)
                                               +++|++.+|+|+|+.+|+||||||+|||++.++.+||+|||+++........   
T Consensus        81 E~~~gg~L~~~l~~~~~l~~~~~~~~~~qi~~aL~~lH~~givHrDlKp~NILi~~~~~vkL~DFGla~~~~~~~~~~~~  160 (363)
T cd05628          81 EFLPGGDMMTLLMKKDTLTEEETQFYIAETVLAIDSIHQLGFIHRDIKPDNLLLDSKGHVKLSDFGLCTGLKKAHRTEFY  160 (363)
T ss_pred             cCCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeEecCCCHHHeEECCCCCEEEeeccCccccccccccccc
Confidence                                     3678999999999999999999999999999999999999999764321100   


Q ss_pred             ------------------------------ccccccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCC
Q 045449          730 ------------------------------SKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       730 ------------------------------~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                                                    ......+||+.|+|||++.+..++.++|||||||++|+|++|..||.+.
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gt~~Y~aPE~~~~~~~~~~~DvwSlGvil~ell~G~~Pf~~~  239 (363)
T cd05628         161 RNLNHSLPSDFTFQNMNSKRKAETWKRNRRQLAFSTVGTPDYIAPEVFMQTGYNKLCDWWSLGVIMYEMLIGYPPFCSE  239 (363)
T ss_pred             ccccccccccccccccccccccchhhhccccccccccCCccccCHHHHcCCCCCCchhhhhhHHHHHHHHhCCCCCCCC
Confidence                                          0012357999999999999999999999999999999999999999653

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. NDR1 is highly expressed in thymus, mus

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.90  E-value=4.4e-23  Score=238.70  Aligned_cols=267  Identities=26%  Similarity=0.385  Sum_probs=143.7

Q ss_pred             CCcEEEccCCCCCCCCCCCCCCCCCCCEEECCCCcCcCCCchhhhcCCCCcEEecccccccCccCccccCCCCCCccccc
Q 045449           77 SLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQLFGSLSSFIFNMSSMTTIDLSINRLSGELPANICKIPSTLSKCKQ  156 (823)
Q Consensus        77 ~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~p~~~~~l~~  156 (823)
                      .-..|||+.|.|+ .+|..+.  ++|+.|+|++|+|+. +|.   .+++|++|+|++|+|+ .+|..          .++
T Consensus       202 ~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lt-sLP~l----------p~s  263 (788)
T PRK15387        202 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPVL----------PPG  263 (788)
T ss_pred             CCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccC-cccCc----------ccc
Confidence            3456677777666 5565554  356667777776663 333   2356666666666666 23321          235


Q ss_pred             cceeeeccceeeccCccccccchhhHHHHHhhcCCCcccCCcccCCcchhhhhccccccccCCccccccCCCCCcEEEcc
Q 045449          157 LEELNLGFNNLSGAIPKEIGNLTKLKEIISTITNSTVCEIPREIGNLPYLARLALATNNLVGVVPVTIFNMSALKEISLL  236 (823)
Q Consensus       157 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~~l~~n~~~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls  236 (823)
                      |+.|+|++|.++ .+|..+                            ++|+.|++++|+++. +|.   ..++|+.|+|+
T Consensus       264 L~~L~Ls~N~L~-~Lp~lp----------------------------~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS  310 (788)
T PRK15387        264 LLELSIFSNPLT-HLPALP----------------------------SGLCKLWIFGNQLTS-LPV---LPPGLQELSVS  310 (788)
T ss_pred             cceeeccCCchh-hhhhch----------------------------hhcCEEECcCCcccc-ccc---cccccceeECC
Confidence            666666666655 222110                            123445555555553 232   12455555555


Q ss_pred             CCcccccCCcccccCCCCccEEEeeccccccccCccccCCCCCCeEEeecccccccCCCccCCCcccCcccccCccccCC
Q 045449          237 NNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSITNSSKLSDLELGENLFSGFIPNTIGNLRNLEFGNIADNYLTSS  316 (823)
Q Consensus       237 ~N~l~g~lp~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~  316 (823)
                      +|+|+ .+|..    ..+|+.|++++|+|++ +|..   ..+|++|+|++|+|++ +|...   .+|+            
T Consensus       311 ~N~L~-~Lp~l----p~~L~~L~Ls~N~L~~-LP~l---p~~Lq~LdLS~N~Ls~-LP~lp---~~L~------------  365 (788)
T PRK15387        311 DNQLA-SLPAL----PSELCKLWAYNNQLTS-LPTL---PSGLQELSVSDNQLAS-LPTLP---SELY------------  365 (788)
T ss_pred             CCccc-cCCCC----cccccccccccCcccc-cccc---ccccceEecCCCccCC-CCCCC---cccc------------
Confidence            55555 34431    2245555555555542 3321   1245555555555553 22211   2333            


Q ss_pred             CCcccccccccCCCCceEEEeecCCCCccCCccccccccccceEEecCCcceeccCccccCcccccEEEcccCcCCCCch
Q 045449          317 TPELSFLSSLTNCKKLKVLIVTGNPLDGILPKSIGNFSLSLETILMANCSISGNIPQVVGNLSNLLVLELGGNNLTGPIP  396 (823)
Q Consensus       317 ~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p  396 (823)
                                       .|++++|.|++ +|..    +.+|+.|++++|+|++ +|..   .++|+.|++++|+|++ +|
T Consensus       366 -----------------~L~Ls~N~L~~-LP~l----~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Lss-IP  418 (788)
T PRK15387        366 -----------------KLWAYNNRLTS-LPAL----PSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLTS-LP  418 (788)
T ss_pred             -----------------eehhhcccccc-Cccc----ccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCCC-CC
Confidence                             44444444442 2321    1345566666666653 3332   2457777777777763 55


Q ss_pred             hcccccCCCCEEEccCCCCCCcchHhhhcCCCCCEEEcccCcCcccccccccCC
Q 045449          397 VTFSQLQTLQAFDLTRNKLAGPITDELCHLARLHSLVLQGNKFSGSIPSCLGNL  450 (823)
Q Consensus       397 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l  450 (823)
                      ..+   .+|+.|+|++|+|+ .+|..++++++|+.|+|++|.|++.+|..+..+
T Consensus       419 ~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~l  468 (788)
T PRK15387        419 MLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREI  468 (788)
T ss_pred             cch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHHH
Confidence            432   35677777777777 567777777778888888888887777666443

>KOG4717 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.89  E-value=2.8e-24  Score=224.66  Aligned_cols=147  Identities=24%  Similarity=0.354  Sum_probs=124.3

Q ss_pred             CeEEEEEEehHhh--HHHHHHHHHHHHHHhhcchhhHHH-----------------------------------------
Q 045449          641 GMEVAVKVFHQQY--ERALKSFEDECEVRKRIRHRNLVK-----------------------------------------  677 (823)
Q Consensus       641 ~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~-----------------------------------------  677 (823)
                      |..||||++.+..  ......+.+|++-|+-++|||||+                                         
T Consensus        43 GekVAVKviDKTKlD~~st~hlfqEVRCMKLVQHpNiVRLYEViDTQTKlyLiLELGD~GDl~DyImKHe~Gl~E~La~k  122 (864)
T KOG4717|consen   43 GEKVAVKVIDKTKLDTLSTGHLFQEVRCMKLVQHPNIVRLYEVIDTQTKLYLILELGDGGDLFDYIMKHEEGLNEDLAKK  122 (864)
T ss_pred             cceeEEEEecccccchhhhhHHHHHHHHHHHhcCcCeeeeeehhcccceEEEEEEecCCchHHHHHHhhhccccHHHHHH
Confidence            7889999998654  344567889999999999999999                                         


Q ss_pred             HHHHHHHHhhhcCCCCEEeccCCCCCEEeC-CCCcEEEeecccccccCCCCccccccccccCCCcCcccccCCCcccc-c
Q 045449          678 IISSSLEYLHFGHSIPIIHCDLKPSNVLLD-EDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVST-R  755 (823)
Q Consensus       678 ~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~-~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~-~  755 (823)
                      +++|++.++.|||..-|||||+||+||.+- .-|.+||+|||++-.+.+.+.   .++.+|+..|-|||++.+..|+. .
T Consensus       123 YF~QI~~AI~YCHqLHVVHRDLKPENVVFFEKlGlVKLTDFGFSNkf~PG~k---L~TsCGSLAYSAPEILLGDsYDAPA  199 (864)
T KOG4717|consen  123 YFAQIVHAISYCHQLHVVHRDLKPENVVFFEKLGLVKLTDFGFSNKFQPGKK---LTTSCGSLAYSAPEILLGDSYDAPA  199 (864)
T ss_pred             HHHHHHHHHHHHhhhhhhcccCCcceeEEeeecCceEeeeccccccCCCcch---hhcccchhhccCchhhhcCccCCcc
Confidence            478999999999999999999999999875 558999999999987765543   45679999999999999999964 5


Q ss_pred             cceehhhhhhccccCCCCCcCCCc-----ccccccccccC
Q 045449          756 GDVCSFGIISGGKETRSMTVGETC-----TPVRESKYEVH  790 (823)
Q Consensus       756 ~Dv~S~Gvv~~~~~~~~~~~~~~~-----~~~~~~~~~~~  790 (823)
                      +||||+|||+|-+..|+.||++..     ..++..+|..+
T Consensus       200 VDiWSLGVILyMLVCGq~PFqeANDSETLTmImDCKYtvP  239 (864)
T KOG4717|consen  200 VDIWSLGVILYMLVCGQPPFQEANDSETLTMIMDCKYTVP  239 (864)
T ss_pred             hhhhHHHHHHHHHHhCCCccccccchhhhhhhhcccccCc
Confidence            799999999999999999998753     33455555544

>KOG0607 consensus MAP kinase-interacting kinase and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.89  E-value=3.1e-24  Score=212.71  Aligned_cols=172  Identities=24%  Similarity=0.349  Sum_probs=137.2

Q ss_pred             ccCHHHHHHHhccCCccceeeccC------------CeEEEEEEehHhhHHHHHHHHHHHHHHhhc-chhhHHHH-----
Q 045449          617 RFSYHELLRATDRFSENNLIGIGN------------GMEVAVKVFHQQYERALKSFEDECEVRKRI-RHRNLVKI-----  678 (823)
Q Consensus       617 ~~~~~~l~~at~~f~~~~~lg~g~------------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~~-----  678 (823)
                      ..+|.|+.+.|+     +.+|+|+            |.++|||++.+.......+..+|++++.+. .|+||+++     
T Consensus        72 ~g~F~d~YkLt~-----e~LGeGAyasVqtcv~i~t~~EYAVKiidKq~gHsR~RvfREVe~f~~Cqgh~nilqLiefFE  146 (463)
T KOG0607|consen   72 SGKFEDMYKLTS-----ELLGEGAYASVQTCVSIQTGKEYAVKIIDKQPGHSRSRVFREVETFYQCQGHKNILQLIEFFE  146 (463)
T ss_pred             cchHHHHHHhHH-----HHhcCccceeeeeeeeeccchhhhhhhhhcCCchHHHHHHHHHHHHHHhcCCccHHHHHHHhc
Confidence            456899999884     6888886            677999999988777778999999999999 59999993     


Q ss_pred             -----------------------------------HHHHHHHhhhcCCCCEEeccCCCCCEEeCCC---CcEEEeecccc
Q 045449          679 -----------------------------------ISSSLEYLHFGHSIPIIHCDLKPSNVLLDED---MVAHISDFGIA  720 (823)
Q Consensus       679 -----------------------------------~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~---~~~kl~DfGla  720 (823)
                                                         +..+..+|.++|..||.|||+||+|||-...   ..+|||||.++
T Consensus       147 dd~~FYLVfEKm~GGplLshI~~~~~F~E~EAs~vvkdia~aLdFlH~kgIAHRDlKPENiLC~~pn~vsPvKiCDfDLg  226 (463)
T KOG0607|consen  147 DDTRFYLVFEKMRGGPLLSHIQKRKHFNEREASRVVKDIASALDFLHTKGIAHRDLKPENILCESPNKVSPVKICDFDLG  226 (463)
T ss_pred             ccceEEEEEecccCchHHHHHHHhhhccHHHHHHHHHHHHHHHHHHhhcCcccccCCccceeecCCCCcCceeeeccccc
Confidence                                               3466778999999999999999999998643   36899999987


Q ss_pred             cccCCCCc-----cccccccccCCCcCcccccC-----CCccccccceehhhhhhccccCCCCCcCCCc-----------
Q 045449          721 KLLSGEDQ-----LSKQTQTLATIGYMAPEYGT-----KGRVSTRGDVCSFGIISGGKETRSMTVGETC-----------  779 (823)
Q Consensus       721 ~~~~~~~~-----~~~~~~~~gt~~y~aPE~~~-----~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~~-----------  779 (823)
                      ..+.....     .....+.+|+..|||||++.     ...|+.++|.||+|||+|-|+.|..||.+.+           
T Consensus       227 Sg~k~~~~~spastP~L~tPvGSAEfMAPEVVd~fv~qA~~YDKrCDlwSLGvIlYImLsGYpPFvG~Cg~dCGWdrGe~  306 (463)
T KOG0607|consen  227 SGIKLNNDCSPASTPELLTPVGSAEFMAPEVVDVFVDQATFYDKRCDLWSLGVILYIMLSGYPPFVGHCGADCGWDRGEV  306 (463)
T ss_pred             cccccCCCCCCCCCccccCcccchhhcchhHHhhhccccccccccccHHHHHHHHHHHHhCCCCccCccCCcCCccCCCc
Confidence            65432221     12234678999999999753     2358999999999999999999999997652           


Q ss_pred             ---------ccccccccccCCcc
Q 045449          780 ---------TPVRESKYEVHPAT  793 (823)
Q Consensus       780 ---------~~~~~~~~~~~~~~  793 (823)
                               +.++++.|+++...
T Consensus       307 Cr~CQ~~LFesIQEGkYeFPdkd  329 (463)
T KOG0607|consen  307 CRVCQNKLFESIQEGKYEFPDKD  329 (463)
T ss_pred             cHHHHHHHHHHHhccCCcCChhh
Confidence                     45667777776543

>cd05629 STKc_NDR_like_fungal Catalytic domain of Fungal Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=99.89  E-value=1.6e-23  Score=232.51  Aligned_cols=150  Identities=23%  Similarity=0.262  Sum_probs=121.7

Q ss_pred             cCCccceeeccC------------CeEEEEEEehHhh---HHHHHHHHHHHHHHhhcchhhHHH----------------
Q 045449          629 RFSENNLIGIGN------------GMEVAVKVFHQQY---ERALKSFEDECEVRKRIRHRNLVK----------------  677 (823)
Q Consensus       629 ~f~~~~~lg~g~------------~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~----------------  677 (823)
                      +|...+.||.|+            +..||||++....   ....+.+.+|++++++++||||++                
T Consensus         2 ~y~~~~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~l~hp~iv~~~~~~~~~~~~~lv~E   81 (377)
T cd05629           2 DFHTVKVIGKGAFGEVRLVQKKDTGKIYAMKTLLKSEMFKKDQLAHVKAERDVLAESDSPWVVSLYYSFQDAQYLYLIME   81 (377)
T ss_pred             CceEeEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHHHHhHHHHHHHHHHHHHHhCCCCCcceEEEEEEcCCeeEEEEe
Confidence            466667777765            5679999986542   334567889999999999999998                


Q ss_pred             ------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCcc----
Q 045449          678 ------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQL----  729 (823)
Q Consensus       678 ------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~----  729 (823)
                                              ++.|++.+|+|+|+.+|+||||||+|||++.++.+||+|||+++........    
T Consensus        82 ~~~gg~L~~~l~~~~~~~~~~~~~~~~ql~~aL~~LH~~givHrDlkp~NIll~~~~~~kl~DfGla~~~~~~~~~~~~~  161 (377)
T cd05629          82 FLPGGDLMTMLIKYDTFSEDVTRFYMAECVLAIEAVHKLGFIHRDIKPDNILIDRGGHIKLSDFGLSTGFHKQHDSAYYQ  161 (377)
T ss_pred             CCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHEEECCCCCEEEeeccccccccccccccccc
Confidence                                    3578999999999999999999999999999999999999999643211000    


Q ss_pred             --------c---------------------------------cccccccCCCcCcccccCCCccccccceehhhhhhccc
Q 045449          730 --------S---------------------------------KQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGK  768 (823)
Q Consensus       730 --------~---------------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~  768 (823)
                              .                                 .....+||+.|+|||++.+..++.++||||+||++|++
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~el  241 (377)
T cd05629         162 KLLQGKSNKNRIDNRNSVAVDSINLTMSSKDQIATWKKNRRLMAYSTVGTPDYIAPEIFLQQGYGQECDWWSLGAIMFEC  241 (377)
T ss_pred             ccccccccccccccccccccccccccccchhhhhhhhhcccccccccCCCccccCHHHHccCCCCCceeeEecchhhhhh
Confidence                    0                                 00124699999999999988999999999999999999


Q ss_pred             cCCCCCcCCC
Q 045449          769 ETRSMTVGET  778 (823)
Q Consensus       769 ~~~~~~~~~~  778 (823)
                      ++|..||...
T Consensus       242 ltG~~Pf~~~  251 (377)
T cd05629         242 LIGWPPFCSE  251 (377)
T ss_pred             hcCCCCCCCC
Confidence            9999999653

Serine/Threonine Kinases (STKs), NDR kinase subfamily, fungal NDR-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group is composed of fungal NDR-like proteins including Saccharomyces cerevisiae CBK1 (or CBK1p), Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like NDR kinase, group members contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. CBK1 is an essential component in the RAM (regulation of

>cd05571 STKc_PKB Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B

Probab=99.89  E-value=1.7e-23  Score=227.14  Aligned_cols=136  Identities=22%  Similarity=0.251  Sum_probs=116.0

Q ss_pred             CeEEEEEEehHhh---HHHHHHHHHHHHHHhhcchhhHHH----------------------------------------
Q 045449          641 GMEVAVKVFHQQY---ERALKSFEDECEVRKRIRHRNLVK----------------------------------------  677 (823)
Q Consensus       641 ~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~----------------------------------------  677 (823)
                      |..||||++....   ......+.+|++++++++||||++                                        
T Consensus        20 ~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~   99 (323)
T cd05571          20 GKYYAMKILKKEVIIAKDEVAHTLTESRVLQNTRHPFLTALKYSFQTHDRLCFVMEYANGGELFFHLSRERVFSEDRARF   99 (323)
T ss_pred             CCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCCCEEEEEEcCCEEEEEEeCCCCCcHHHHHHHcCCCCHHHHHH
Confidence            6789999997543   234467889999999999999998                                        


Q ss_pred             HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccCCCccccccc
Q 045449          678 IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGD  757 (823)
Q Consensus       678 ~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~D  757 (823)
                      ++.|++.+|+|+|+.+|+||||||+||+++.++.+||+|||+++.......  .....+||+.|+|||++.+..++.++|
T Consensus       100 ~~~qi~~~L~~lH~~~ivHrDlkp~NIll~~~~~~kl~DfG~a~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~D  177 (323)
T cd05571         100 YGAEIVSALGYLHSCDVVYRDLKLENLMLDKDGHIKITDFGLCKEGISDGA--TMKTFCGTPEYLAPEVLEDNDYGRAVD  177 (323)
T ss_pred             HHHHHHHHHHHHHhCCeEeCCCCHHHEEECCCCCEEEeeCCCCcccccCCC--cccceecCccccChhhhcCCCCCcccc
Confidence            357899999999999999999999999999999999999999985432211  223457999999999999999999999


Q ss_pred             eehhhhhhccccCCCCCcCCC
Q 045449          758 VCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       758 v~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      |||+||++|++++|..||...
T Consensus       178 iwSlG~il~elltg~~Pf~~~  198 (323)
T cd05571         178 WWGLGVVMYEMMCGRLPFYNQ  198 (323)
T ss_pred             CcccchhhhhhhcCCCCCCCC
Confidence            999999999999999998653

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having be

>cd05599 STKc_NDR_like Catalytic domain of Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=99.89  E-value=1.6e-23  Score=231.49  Aligned_cols=150  Identities=24%  Similarity=0.292  Sum_probs=124.2

Q ss_pred             cCCccceeeccC------------CeEEEEEEehHhh---HHHHHHHHHHHHHHhhcchhhHHH----------------
Q 045449          629 RFSENNLIGIGN------------GMEVAVKVFHQQY---ERALKSFEDECEVRKRIRHRNLVK----------------  677 (823)
Q Consensus       629 ~f~~~~~lg~g~------------~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~----------------  677 (823)
                      +|...+.||.|+            ++.||||++....   ......+.+|++++.+++||||++                
T Consensus         2 ~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~~~~~~~~~~~~~lv~E   81 (364)
T cd05599           2 DFESIKVIGRGAFGEVRLVQKKDTGHIYAMKKLRKSEMLEKEQVAHVRAERDILAEADNPWVVKLYYSFQDENYLYLIME   81 (364)
T ss_pred             CceEEEEEEecCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceEEEEEcCCeEEEEEC
Confidence            567777888875            5679999997543   334467889999999999999998                


Q ss_pred             ------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccc---
Q 045449          678 ------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLS---  730 (823)
Q Consensus       678 ------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~---  730 (823)
                                              +++|++.+|+|+|+.+|+||||||+|||++.++.+||+|||+++.+.......   
T Consensus        82 ~~~~g~L~~~l~~~~~l~~~~~~~~~~qi~~aL~~lH~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~  161 (364)
T cd05599          82 YLPGGDMMTLLMKKDTFTEEETRFYIAETILAIDSIHKLGYIHRDIKPDNLLLDAKGHIKLSDFGLCTGLKKSHRTEFYR  161 (364)
T ss_pred             CCCCcHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeEeccCCHHHeEECCCCCEEEeecccceeccccccccccc
Confidence                                    35789999999999999999999999999999999999999987643211000   


Q ss_pred             ---------------------------------cccccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCC
Q 045449          731 ---------------------------------KQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGE  777 (823)
Q Consensus       731 ---------------------------------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~  777 (823)
                                                       .....+||+.|+|||++....++.++||||+||++|++.+|..||..
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~G~~Pf~~  241 (364)
T cd05599         162 ILSHALPSNFLDFISKPMSSKRKAETWKRNRRALAYSTVGTPDYIAPEVFLQTGYNKECDWWSLGVIMYEMLVGYPPFCS  241 (364)
T ss_pred             cccccccccccccccccccccccccchhhcccccccccccCccccCHHHHcCCCCCCeeeeecchhHHHHhhcCCCCCCC
Confidence                                             01124699999999999988999999999999999999999999865


Q ss_pred             C
Q 045449          778 T  778 (823)
Q Consensus       778 ~  778 (823)
                      .
T Consensus       242 ~  242 (364)
T cd05599         242 D  242 (364)
T ss_pred             C
Confidence            4

Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related (NDR) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. NDR kinases regulate mitosis, cell growth, embryonic development, and neurological processes. They are also required for proper centrosome duplica

>KOG0986 consensus G protein-coupled receptor kinase [Signal transduction mechanisms]

Probab=99.89  E-value=1.5e-24  Score=224.43  Aligned_cols=153  Identities=23%  Similarity=0.279  Sum_probs=127.6

Q ss_pred             ccCCccceeeccC-CeE-----------EEEEEehHhh---HHHHHHHHHHHHHHhhcchhhHHH---------------
Q 045449          628 DRFSENNLIGIGN-GME-----------VAVKVFHQQY---ERALKSFEDECEVRKRIRHRNLVK---------------  677 (823)
Q Consensus       628 ~~f~~~~~lg~g~-~~~-----------vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~---------------  677 (823)
                      +.|+.-+++|+|+ |.+           +|.|.+.+..   +++..-...|..++.++..+.||.               
T Consensus       185 n~F~~~RvlGkGGFGEV~acqvraTGKMYAcKkL~KKRiKkr~ge~maLnEk~iL~kV~s~FiVslaYAfeTkd~LClVL  264 (591)
T KOG0986|consen  185 NTFRVYRVLGKGGFGEVCACQVRATGKMYACKKLDKKRIKKRKGETMALNEKQILEKVSSPFIVSLAYAFETKDALCLVL  264 (591)
T ss_pred             cceeeeEEEecccccceeEEEEecchhhHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhccCcEEEEeeeecCCCceEEEE
Confidence            4677788999997 333           4445554333   234456778999999999999987               


Q ss_pred             ---------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccc
Q 045449          678 ---------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLS  730 (823)
Q Consensus       678 ---------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~  730 (823)
                                                 ++|+++.+|.|+|..+||.||+||+|||+|+.|+++|+|.|+|..+...+.  
T Consensus       265 tlMNGGDLkfHiyn~g~~gF~e~ra~FYAAEi~cGLehlH~~~iVYRDLKPeNILLDd~GhvRISDLGLAvei~~g~~--  342 (591)
T KOG0986|consen  265 TLMNGGDLKFHIYNHGNPGFDEQRARFYAAEIICGLEHLHRRRIVYRDLKPENILLDDHGHVRISDLGLAVEIPEGKP--  342 (591)
T ss_pred             EeecCCceeEEeeccCCCCCchHHHHHHHHHHHhhHHHHHhcceeeccCChhheeeccCCCeEeeccceEEecCCCCc--
Confidence                                       478999999999999999999999999999999999999999998876544  


Q ss_pred             cccccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCCccccc
Q 045449          731 KQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGETCTPVR  783 (823)
Q Consensus       731 ~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~~~~~~  783 (823)
                       ....+||.+|||||++..+.|+...|+||+||++|||+.|+.||..-.+++.
T Consensus       343 -~~~rvGT~GYMAPEvl~ne~Y~~s~Dwf~lGCllYemi~G~sPFr~~KeKvk  394 (591)
T KOG0986|consen  343 -IRGRVGTVGYMAPEVLQNEVYDFSPDWFSLGCLLYEMIAGHSPFRQRKEKVK  394 (591)
T ss_pred             -cccccCcccccCHHHHcCCcccCCccHHHHHhHHHHHHcccCchhhhhhhhh
Confidence             2345899999999999999999999999999999999999999976544443

>cd05625 STKc_LATS1 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 1

Probab=99.89  E-value=1.5e-23  Score=233.13  Aligned_cols=150  Identities=21%  Similarity=0.253  Sum_probs=122.9

Q ss_pred             cCCccceeeccC------------CeEEEEEEehHhh---HHHHHHHHHHHHHHhhcchhhHHH----------------
Q 045449          629 RFSENNLIGIGN------------GMEVAVKVFHQQY---ERALKSFEDECEVRKRIRHRNLVK----------------  677 (823)
Q Consensus       629 ~f~~~~~lg~g~------------~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~----------------  677 (823)
                      +|...+.||+|+            +..||||++....   ....+.+.+|++++++++|+|||+                
T Consensus         2 ~f~~~~~LG~G~~g~Vy~a~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~il~~~~h~~iv~~~~~~~~~~~~~lv~E   81 (382)
T cd05625           2 MFVKIKTLGIGAFGEVCLARKVDTKALYAMKTLRKKDVLLRNQVAHVKAERDILAEADNEWVVRLYYSFQDKDNLYFVMD   81 (382)
T ss_pred             CcEEEEEEEeCCCEEEEEEEECCCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhCCCCcCCeEEEEEEeCCEEEEEEe
Confidence            466677788775            5679999997543   344567899999999999999998                


Q ss_pred             ------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCc-----
Q 045449          678 ------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQ-----  728 (823)
Q Consensus       678 ------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~-----  728 (823)
                                              +++|++.+|+|+|+.+|+||||||+|||++.++.+||+|||+|+.......     
T Consensus        82 ~~~gg~L~~~l~~~~~~~e~~~~~~~~qi~~al~~lH~~~ivHrDlKp~NILl~~~g~~kL~DFGla~~~~~~~~~~~~~  161 (382)
T cd05625          82 YIPGGDMMSLLIRMGIFPEDLARFYIAELTCAVESVHKMGFIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHDSKYYQ  161 (382)
T ss_pred             CCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEECCCCCEEEeECCCCccccccccccccc
Confidence                                    357899999999999999999999999999999999999999753210000     


Q ss_pred             ----------------------------------------cccccccccCCCcCcccccCCCccccccceehhhhhhccc
Q 045449          729 ----------------------------------------LSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGK  768 (823)
Q Consensus       729 ----------------------------------------~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~  768 (823)
                                                              .......+||+.|+|||++.+..|+.++||||+||++|+|
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~DiwSlGvil~el  241 (382)
T cd05625         162 SGDHVRQDSMDFSNEWGDPANCRCGDRLKPLERRAARQHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVILYEM  241 (382)
T ss_pred             cccccccccccccccccccccccccccccchhhhhccccccccccccccCcccCCHHHhcCCCCCCeeeEEechHHHHHH
Confidence                                                    0001234799999999999999999999999999999999


Q ss_pred             cCCCCCcCCC
Q 045449          769 ETRSMTVGET  778 (823)
Q Consensus       769 ~~~~~~~~~~  778 (823)
                      ++|..||...
T Consensus       242 ltG~~Pf~~~  251 (382)
T cd05625         242 LVGQPPFLAQ  251 (382)
T ss_pred             HhCCCCCCCC
Confidence            9999999754

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. Promoter methylation, loss of heterozygosity, and missense mutations targeting the LATS1 gene have also been found in human sarcomas and ovarian cancers. In addition, decreased expression of LATS1 is associated with an aggressive phenotype an

>cd05621 STKc_ROCK2 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2

Probab=99.89  E-value=1.1e-23  Score=232.43  Aligned_cols=152  Identities=20%  Similarity=0.225  Sum_probs=124.5

Q ss_pred             HhccCCccceeeccC------------CeEEEEEEehHhh---HHHHHHHHHHHHHHhhcchhhHHH-------------
Q 045449          626 ATDRFSENNLIGIGN------------GMEVAVKVFHQQY---ERALKSFEDECEVRKRIRHRNLVK-------------  677 (823)
Q Consensus       626 at~~f~~~~~lg~g~------------~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~-------------  677 (823)
                      ..++|...+.||.|+            +..||+|++....   ....+.+.+|+++++.++||||++             
T Consensus        41 ~~~~y~~~~~lG~G~fg~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~i~~~~~hp~iv~~~~~~~~~~~~~l  120 (370)
T cd05621          41 KAEDYDVVKVIGRGAFGEVQLVRHKSSQKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFCAFQDDKYLYM  120 (370)
T ss_pred             CHHHCeEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCEEEE
Confidence            346777778888875            5679999986432   233456889999999999999998             


Q ss_pred             --------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCcccc
Q 045449          678 --------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSK  731 (823)
Q Consensus       678 --------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~  731 (823)
                                                ++.|++.+|+|+|+.+|+||||||+|||++.++.+||+|||+|+....... ..
T Consensus       121 v~Ey~~gg~L~~~l~~~~~~~~~~~~~~~qil~aL~~LH~~~IvHrDLKp~NILl~~~~~~kL~DFG~a~~~~~~~~-~~  199 (370)
T cd05621         121 VMEYMPGGDLVNLMSNYDVPEKWAKFYTAEVVLALDAIHSMGLIHRDVKPDNMLLDKHGHLKLADFGTCMKMDETGM-VR  199 (370)
T ss_pred             EEcCCCCCcHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHCCeEecCCCHHHEEECCCCCEEEEecccceecccCCc-ee
Confidence                                      356889999999999999999999999999999999999999987643222 12


Q ss_pred             ccccccCCCcCcccccCCC----ccccccceehhhhhhccccCCCCCcCCC
Q 045449          732 QTQTLATIGYMAPEYGTKG----RVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       732 ~~~~~gt~~y~aPE~~~~~----~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      ....+||+.|+|||++.+.    .++.++||||+||++|++++|..||...
T Consensus       200 ~~~~~gt~~Y~aPE~~~~~~~~~~~~~~~DiwSlG~ilyell~G~~Pf~~~  250 (370)
T cd05621         200 CDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLFEMLVGDTPFYAD  250 (370)
T ss_pred             cccCCCCcccCCHHHHhccCCCCCCCcccCEEeehHHHHHHHhCCCCCCCC
Confidence            2346799999999998654    3789999999999999999999998654

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found

>cd05631 STKc_GRK4 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4

Probab=99.89  E-value=9.4e-24  Score=225.00  Aligned_cols=146  Identities=23%  Similarity=0.278  Sum_probs=121.8

Q ss_pred             CCccceeeccC------------CeEEEEEEehHhh---HHHHHHHHHHHHHHhhcchhhHHH-----------------
Q 045449          630 FSENNLIGIGN------------GMEVAVKVFHQQY---ERALKSFEDECEVRKRIRHRNLVK-----------------  677 (823)
Q Consensus       630 f~~~~~lg~g~------------~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~-----------------  677 (823)
                      |...+.||.|+            +..||||.+....   ......+.+|++++++++|++|++                 
T Consensus         2 f~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~iv~~~~~~~~~~~~~lv~e~   81 (285)
T cd05631           2 FRHYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKRILEKVNSRFVVSLAYAYETKDALCLVLTI   81 (285)
T ss_pred             ceEEEEEecCCCEEEEEEEEecCCceEEEEEeeHhhhhhhhhHHHHHHHHHHHHhcCCCcEEEEEEEEccCCeEEEEEEe
Confidence            44556677664            5679999986543   233356889999999999999987                 


Q ss_pred             -------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccc
Q 045449          678 -------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQ  732 (823)
Q Consensus       678 -------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~  732 (823)
                                               ++.|++.+|+|+|+.+|+||||||+||+++.++.+||+|||+++.......   .
T Consensus        82 ~~~g~L~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~iiH~dikp~Nill~~~~~~kl~Dfg~~~~~~~~~~---~  158 (285)
T cd05631          82 MNGGDLKFHIYNMGNPGFDEQRAIFYAAELCCGLEDLQRERIVYRDLKPENILLDDRGHIRISDLGLAVQIPEGET---V  158 (285)
T ss_pred             cCCCcHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhCCEEeCCCCHHHEEECCCCCEEEeeCCCcEEcCCCCe---e
Confidence                                     356889999999999999999999999999999999999999987543221   2


Q ss_pred             cccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCC
Q 045449          733 TQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       733 ~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      ....||+.|+|||++.+..++.++||||+||++|++.+|+.||...
T Consensus       159 ~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~~g~~pf~~~  204 (285)
T cd05631         159 RGRVGTVGYMAPEVINNEKYTFSPDWWGLGCLIYEMIQGQSPFRKR  204 (285)
T ss_pred             cCCCCCCCccCHhhhcCCCCCcccCchhHHHHHHHHHhCCCCCCCC
Confidence            3457999999999999999999999999999999999999999754

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found i

>cd05102 PTKc_VEGFR3 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3

Probab=99.89  E-value=6e-24  Score=232.41  Aligned_cols=98  Identities=27%  Similarity=0.326  Sum_probs=83.4

Q ss_pred             HHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccCCCccccccceeh
Q 045449          681 SSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCS  760 (823)
Q Consensus       681 ~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S  760 (823)
                      |++++|+|+|+.+|+||||||+||+++.++.+||+|||+++...............+++.|+|||++.+..++.++||||
T Consensus       182 qi~~aL~~LH~~~ivHrDiKp~Nil~~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDiws  261 (338)
T cd05102         182 QVARGMEFLASRKCIHRDLAARNILLSENNVVKICDFGLARDIYKDPDYVRKGSARLPLKWMAPESIFDKVYTTQSDVWS  261 (338)
T ss_pred             HHHHHHHHHHHCCEECCCCccceEEEcCCCcEEEeecccccccccCcchhcccCCCCCccccCcHHhhcCCCCcccCHHH
Confidence            78889999999999999999999999999999999999998764333222223345678999999998889999999999


Q ss_pred             hhhhhccccC-CCCCcCCC
Q 045449          761 FGIISGGKET-RSMTVGET  778 (823)
Q Consensus       761 ~Gvv~~~~~~-~~~~~~~~  778 (823)
                      |||++|++++ |..||.+.
T Consensus       262 lG~il~el~~~g~~pf~~~  280 (338)
T cd05102         262 FGVLLWEIFSLGASPYPGV  280 (338)
T ss_pred             HHHHHHHHHhCCCCCCCCC
Confidence            9999999986 88888764

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. V

>cd05612 STKc_PRKX_like Catalytic domain of PRKX-like Protein Serine/Threonine Kinases

Probab=99.89  E-value=1.9e-23  Score=223.25  Aligned_cols=145  Identities=25%  Similarity=0.274  Sum_probs=122.6

Q ss_pred             cCCccceeeccC------------CeEEEEEEehHhh---HHHHHHHHHHHHHHhhcchhhHHH----------------
Q 045449          629 RFSENNLIGIGN------------GMEVAVKVFHQQY---ERALKSFEDECEVRKRIRHRNLVK----------------  677 (823)
Q Consensus       629 ~f~~~~~lg~g~------------~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~----------------  677 (823)
                      +|...+.||.|+            +..||||++....   ....+.+.+|++++++++||||++                
T Consensus         2 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e   81 (291)
T cd05612           2 DLERIKTVGTGTFGRVHLVRDRISEHYYALKVMAIPEVIRLKQEQHVHNEKRVLKEVSHPFIIRLFWTEHDQRFLYMLME   81 (291)
T ss_pred             CceeeeeeecCCCeEEEEEEEcCCCCEEEEEEEEHHHHhhhHHHHHHHHHHHHHHhCCCCcHhhhHhhhccCCeEEEEEe
Confidence            456667777764            5679999986432   234567899999999999999998                


Q ss_pred             ------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCcccccc
Q 045449          678 ------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQT  733 (823)
Q Consensus       678 ------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~  733 (823)
                                              ++.|++.+|+|+|+.+|+||||||+||+++.++.+||+|||+++.....     ..
T Consensus        82 ~~~~~~L~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~NIli~~~~~~kl~Dfg~~~~~~~~-----~~  156 (291)
T cd05612          82 YVPGGELFSYLRNSGRFSNSTGLFYASEIVCALEYLHSKEIVYRDLKPENILLDKEGHIKLTDFGFAKKLRDR-----TW  156 (291)
T ss_pred             CCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeeecCCCHHHeEECCCCCEEEEecCcchhccCC-----cc
Confidence                                    2568889999999999999999999999999999999999999875432     12


Q ss_pred             ccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCC
Q 045449          734 QTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       734 ~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      ...||+.|+|||++.+..++.++||||+||++|++++|..||.+.
T Consensus       157 ~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~~l~~g~~pf~~~  201 (291)
T cd05612         157 TLCGTPEYLAPEVIQSKGHNKAVDWWALGILIYEMLVGYPPFFDD  201 (291)
T ss_pred             cccCChhhcCHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Confidence            356999999999999888999999999999999999999998664

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyt

>cd05626 STKc_LATS2 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 2

Probab=99.89  E-value=1.9e-23  Score=232.10  Aligned_cols=150  Identities=21%  Similarity=0.246  Sum_probs=122.6

Q ss_pred             cCCccceeeccC------------CeEEEEEEehHhh---HHHHHHHHHHHHHHhhcchhhHHH----------------
Q 045449          629 RFSENNLIGIGN------------GMEVAVKVFHQQY---ERALKSFEDECEVRKRIRHRNLVK----------------  677 (823)
Q Consensus       629 ~f~~~~~lg~g~------------~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~----------------  677 (823)
                      .|...+.||+|+            +..||||++....   ....+.+.+|++++++++|+||++                
T Consensus         2 ~f~~~~~LG~G~~g~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~l~~~~~~~~~~~lv~E   81 (381)
T cd05626           2 MFVKIKTLGIGAFGEVCLACKVDTHALYAMKTLRKKDVLNRNQVAHVKAERDILAEADNEWVVKLYYSFQDKDNLYFVMD   81 (381)
T ss_pred             CceEEEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhcCCCCeeeeEEEEecCCEEEEEEe
Confidence            456667777775            5679999997543   344567999999999999999998                


Q ss_pred             ------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCc-----
Q 045449          678 ------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQ-----  728 (823)
Q Consensus       678 ------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~-----  728 (823)
                                              +++|++.+|+|+|+.+|+||||||+|||++.++++||+|||+++.......     
T Consensus        82 ~~~gg~L~~~l~~~~~~~e~~~~~~~~qi~~aL~~LH~~givHrDlKp~Nili~~~~~~kL~DFGl~~~~~~~~~~~~~~  161 (381)
T cd05626          82 YIPGGDMMSLLIRMEVFPEVLARFYIAELTLAIESVHKMGFIHRDIKPDNILIDLDGHIKLTDFGLCTGFRWTHNSKYYQ  161 (381)
T ss_pred             cCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeeecCCcHHHEEECCCCCEEEeeCcCCccccccccccccc
Confidence                                    367899999999999999999999999999999999999999864311000     


Q ss_pred             ----------------------------------------cccccccccCCCcCcccccCCCccccccceehhhhhhccc
Q 045449          729 ----------------------------------------LSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGK  768 (823)
Q Consensus       729 ----------------------------------------~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~  768 (823)
                                                              .......+||+.|+|||++.+..++.++||||+||++|++
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~DiwSlG~il~el  241 (381)
T cd05626         162 KGSHIRQDSMEPSDLWDDVSNCRCGDRLKTLEQRATKQHQRCLAHSLVGTPNYIAPEVLLRKGYTQLCDWWSVGVILFEM  241 (381)
T ss_pred             ccccccccccCcccccccccccccccccchhhccccccccccccccccCCccccCHHHHcCCCCCCccceeehhhHHHHH
Confidence                                                    0001235799999999999888899999999999999999


Q ss_pred             cCCCCCcCCC
Q 045449          769 ETRSMTVGET  778 (823)
Q Consensus       769 ~~~~~~~~~~  778 (823)
                      ++|..||...
T Consensus       242 ltG~~Pf~~~  251 (381)
T cd05626         242 LVGQPPFLAP  251 (381)
T ss_pred             HhCCCCCcCC
Confidence            9999999653

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. LATS2 is an essential mitotic regulator responsible for coordinating accurate cytokinesis completion and governing the stabilization of other mitotic regulators. It is also critical in the maintenance of proper chromosome number, genomic stability, mitotic fidelity, and the integrity of centrosome duplication. Downregulation of LATS2 is associated with po

>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.89  E-value=2.1e-23  Score=224.82  Aligned_cols=160  Identities=30%  Similarity=0.462  Sum_probs=133.6

Q ss_pred             cceeeccC------------CeEEEEEEehHhhHHHHHHHHHHHHHHhhcchhhHHHH----------------------
Q 045449          633 NNLIGIGN------------GMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVKI----------------------  678 (823)
Q Consensus       633 ~~~lg~g~------------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~----------------------  678 (823)
                      .-++|+|.            ...+|||-+.....+..+-.-.|+.+-++++|.|||++                      
T Consensus       580 rvVLGKGTYG~VYA~RD~~tqvrIaIKEIpekdsr~~QPLhEEIaLH~~LrHkNIVrYLGs~senGf~kIFMEqVPGGSL  659 (1226)
T KOG4279|consen  580 RVVLGKGTYGTVYAARDMDTQVRIAIKEIPEKDSREVQPLHEEIALHSTLRHKNIVRYLGSVSENGFFKIFMEQVPGGSL  659 (1226)
T ss_pred             eEEeecCceeEEEeeccccceeEEEeeecccccchhhccHHHHHHHHHHHhhHhHHHHhhccCCCCeEEEEeecCCCCcH
Confidence            34678875            23378998887777777889999999999999999993                      


Q ss_pred             ---------------------HHHHHHHhhhcCCCCEEeccCCCCCEEeC-CCCcEEEeecccccccCCCCccccccccc
Q 045449          679 ---------------------ISSSLEYLHFGHSIPIIHCDLKPSNVLLD-EDMVAHISDFGIAKLLSGEDQLSKQTQTL  736 (823)
Q Consensus       679 ---------------------~~~~l~~L~~~h~~~ivHrdlk~~NiLl~-~~~~~kl~DfGla~~~~~~~~~~~~~~~~  736 (823)
                                           -.|++++|.|+|+..|||||||-+|||+. -.|.+||+|||-++.+..-..  ...++.
T Consensus       660 SsLLrskWGPlKDNEstm~fYtkQILeGLkYLHen~IVHRDIKGDNVLvNTySGvlKISDFGTsKRLAginP--~TETFT  737 (1226)
T KOG4279|consen  660 SSLLRSKWGPLKDNESTMNFYTKQILEGLKYLHENKIVHRDIKGDNVLVNTYSGVLKISDFGTSKRLAGINP--CTETFT  737 (1226)
T ss_pred             HHHHHhccCCCccchhHHHHHHHHHHHHhhhhhhcceeeccccCCcEEEeeccceEEecccccchhhccCCc--cccccc
Confidence                                 36999999999999999999999999996 679999999999998765443  345678


Q ss_pred             cCCCcCcccccCCCc--cccccceehhhhhhccccCCCCCcCCCccc----ccccccccCCccc
Q 045449          737 ATIGYMAPEYGTKGR--VSTRGDVCSFGIISGGKETRSMTVGETCTP----VRESKYEVHPATT  794 (823)
Q Consensus       737 gt~~y~aPE~~~~~~--~~~~~Dv~S~Gvv~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~  794 (823)
                      ||..|||||++..++  |+..+|||||||.+-||.||+.||-+...+    .+.+.|..+|.++
T Consensus       738 GTLQYMAPEvIDqG~RGYG~aADIWS~GCT~vEMATGrPPF~ElgspqAAMFkVGmyKvHP~iP  801 (1226)
T KOG4279|consen  738 GTLQYMAPEVIDQGPRGYGKAADIWSFGCTMVEMATGRPPFVELGSPQAAMFKVGMYKVHPPIP  801 (1226)
T ss_pred             cchhhhChHhhccCCcCCCchhhhhhccceeEeeccCCCCeeecCChhHhhhhhcceecCCCCc
Confidence            999999999998764  899999999999999999999999776433    3456677777654

>cd05593 STKc_PKB_gamma Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma

Probab=99.88  E-value=1.4e-23  Score=228.22  Aligned_cols=137  Identities=23%  Similarity=0.251  Sum_probs=116.5

Q ss_pred             CCeEEEEEEehHhh---HHHHHHHHHHHHHHhhcchhhHHH---------------------------------------
Q 045449          640 NGMEVAVKVFHQQY---ERALKSFEDECEVRKRIRHRNLVK---------------------------------------  677 (823)
Q Consensus       640 ~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~---------------------------------------  677 (823)
                      .+..||||++....   ......+.+|++++++++||||++                                       
T Consensus        19 ~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~Ey~~~g~L~~~l~~~~~l~~~~~~   98 (328)
T cd05593          19 SGKYYAMKILKKEVIIAKDEVAHTLTESRVLKNTRHPFLTSLKYSFQTKDRLCFVMEYVNGGELFFHLSRERVFSEDRTR   98 (328)
T ss_pred             CCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceEEEEEcCCEEEEEEeCCCCCCHHHHHHhcCCCCHHHHH
Confidence            36789999997543   234567889999999999999998                                       


Q ss_pred             -HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccCCCcccccc
Q 045449          678 -IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRG  756 (823)
Q Consensus       678 -~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~  756 (823)
                       ++.|++.+|+|+|+.+|+||||||+|||++.++.+||+|||+++.......  .....+||+.|+|||++.+..++.++
T Consensus        99 ~~~~qi~~aL~~LH~~~ivHrDikp~NIll~~~~~~kL~DfG~~~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~  176 (328)
T cd05593          99 FYGAEIVSALDYLHSGKIVYRDLKLENLMLDKDGHIKITDFGLCKEGITDAA--TMKTFCGTPEYLAPEVLEDNDYGRAV  176 (328)
T ss_pred             HHHHHHHHHHHHHHhCCeEecccCHHHeEECCCCcEEEecCcCCccCCCccc--ccccccCCcCccChhhhcCCCCCccC
Confidence             357889999999999999999999999999999999999999986432211  22345799999999999988999999


Q ss_pred             ceehhhhhhccccCCCCCcCCC
Q 045449          757 DVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       757 Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      ||||+||++|++++|..||...
T Consensus       177 DiwslGvil~elltG~~Pf~~~  198 (328)
T cd05593         177 DWWGLGVVMYEMMCGRLPFYNQ  198 (328)
T ss_pred             CccccchHHHHHhhCCCCCCCC
Confidence            9999999999999999999653

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulate

>PTZ00263 protein kinase A catalytic subunit; Provisional

Probab=99.88  E-value=1.7e-23  Score=227.79  Aligned_cols=146  Identities=23%  Similarity=0.284  Sum_probs=124.4

Q ss_pred             ccCCccceeeccC------------CeEEEEEEehHhh---HHHHHHHHHHHHHHhhcchhhHHH---------------
Q 045449          628 DRFSENNLIGIGN------------GMEVAVKVFHQQY---ERALKSFEDECEVRKRIRHRNLVK---------------  677 (823)
Q Consensus       628 ~~f~~~~~lg~g~------------~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~---------------  677 (823)
                      ++|...+.||.|+            ++.||||++....   ....+.+.+|++++++++||||++               
T Consensus        18 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~   97 (329)
T PTZ00263         18 SDFEMGETLGTGSFGRVRIAKHKGTGEYYAIKCLKKREILKMKQVQHVAQEKSILMELSHPFIVNMMCSFQDENRVYFLL   97 (329)
T ss_pred             hheEEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCCCcEEEEEEcCCEEEEEE
Confidence            4566677888775            5679999997543   234567899999999999999998               


Q ss_pred             -------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccc
Q 045449          678 -------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQ  732 (823)
Q Consensus       678 -------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~  732 (823)
                                               ++.|++.+|+|+|+.+|+||||||+|||++.++.+||+|||+++......     
T Consensus        98 e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivH~dlkp~NIll~~~~~~kl~Dfg~~~~~~~~~-----  172 (329)
T PTZ00263         98 EFVVGGELFTHLRKAGRFPNDVAKFYHAELVLAFEYLHSKDIIYRDLKPENLLLDNKGHVKVTDFGFAKKVPDRT-----  172 (329)
T ss_pred             cCCCCChHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeeecCCCHHHEEECCCCCEEEeeccCceEcCCCc-----
Confidence                                     24688899999999999999999999999999999999999998764321     


Q ss_pred             cccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCC
Q 045449          733 TQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       733 ~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      ....||+.|+|||++.+..++.++|||||||++|++++|..||.+.
T Consensus       173 ~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~  218 (329)
T PTZ00263        173 FTLCGTPEYLAPEVIQSKGHGKAVDWWTMGVLLYEFIAGYPPFFDD  218 (329)
T ss_pred             ceecCChhhcCHHHHcCCCCCCcceeechHHHHHHHHcCCCCCCCC
Confidence            2357999999999999988999999999999999999999998653

>cd05598 STKc_LATS Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor

Probab=99.88  E-value=2.3e-23  Score=231.29  Aligned_cols=150  Identities=23%  Similarity=0.256  Sum_probs=122.0

Q ss_pred             cCCccceeeccC------------CeEEEEEEehHhh---HHHHHHHHHHHHHHhhcchhhHHH----------------
Q 045449          629 RFSENNLIGIGN------------GMEVAVKVFHQQY---ERALKSFEDECEVRKRIRHRNLVK----------------  677 (823)
Q Consensus       629 ~f~~~~~lg~g~------------~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~----------------  677 (823)
                      .|...+.||.|+            +..||||++....   ....+.+.+|++++++++|+||++                
T Consensus         2 ~y~~~~~lG~G~~g~V~~a~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~~~~~~~~~~~~~lv~E   81 (376)
T cd05598           2 MFVKIKTIGIGAFGEVCLVRKVDTNALYAMKTLRKADVLMRNQAAHVKAERDILAEADNEWVVKLYYSFQDKDNLYFVMD   81 (376)
T ss_pred             CceEEEEEEeCCCeEEEEEEECCCCCEEEEEEEcHHHHHhhhhHHHHHHHHHHHHhCCCCCcceEEEEEEcCCEEEEEEe
Confidence            466667777775            5679999996543   233467889999999999999998                


Q ss_pred             ------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCC------
Q 045449          678 ------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGED------  727 (823)
Q Consensus       678 ------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~------  727 (823)
                                              +++|++.+|+|+|+.+|+||||||+|||++.++.+||+|||+|+.+....      
T Consensus        82 ~~~~g~L~~~i~~~~~~~~~~~~~~~~qi~~al~~lH~~~ivHrDlkp~Nill~~~~~ikL~DFG~a~~~~~~~~~~~~~  161 (376)
T cd05598          82 YIPGGDMMSLLIRLGIFEEDLARFYIAELTCAIESVHKMGFIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHDSKYYQ  161 (376)
T ss_pred             CCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeEeCCCCHHHEEECCCCCEEEEeCCCCccccccccccccc
Confidence                                    35788999999999999999999999999999999999999985321000      


Q ss_pred             -----------------------------------ccccccccccCCCcCcccccCCCccccccceehhhhhhccccCCC
Q 045449          728 -----------------------------------QLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRS  772 (823)
Q Consensus       728 -----------------------------------~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~  772 (823)
                                                         ........+||+.|+|||++.+..++.++||||+||++|++++|.
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvilyell~G~  241 (376)
T cd05598         162 KGDHHRQDSMEPSEEWSEIDRCRLKPLERRRKRQHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVILYEMLVGQ  241 (376)
T ss_pred             cccccccccccccccccccccccccchhhhhhhhcccccccccCCCccccCHHHHcCCCCCcceeeeeccceeeehhhCC
Confidence                                               000012357999999999999999999999999999999999999


Q ss_pred             CCcCCC
Q 045449          773 MTVGET  778 (823)
Q Consensus       773 ~~~~~~  778 (823)
                      .||.+.
T Consensus       242 ~Pf~~~  247 (376)
T cd05598         242 PPFLAD  247 (376)
T ss_pred             CCCCCC
Confidence            999764

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS was originally identified in Drosophila using a screen for genes whose inactivation led to overproliferation of cells. In tetrapods, there are two LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. LATS functions as a tumor suppressor and is implicated in cell cycle regulation.

>cd05622 STKc_ROCK1 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1

Probab=99.88  E-value=1.7e-23  Score=231.08  Aligned_cols=158  Identities=20%  Similarity=0.229  Sum_probs=129.4

Q ss_pred             HHHHHHHhccCCccceeeccC------------CeEEEEEEehHhh---HHHHHHHHHHHHHHhhcchhhHHH-------
Q 045449          620 YHELLRATDRFSENNLIGIGN------------GMEVAVKVFHQQY---ERALKSFEDECEVRKRIRHRNLVK-------  677 (823)
Q Consensus       620 ~~~l~~at~~f~~~~~lg~g~------------~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~-------  677 (823)
                      ..++....++|...+.||.|+            +..||+|++....   ....+.+.+|+.+++.++||||++       
T Consensus        35 ~~~~~~~~~~y~i~~~lG~G~fg~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~e~~i~~~~~hp~iv~~~~~~~~  114 (371)
T cd05622          35 IRDLRMKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFYAFQD  114 (371)
T ss_pred             HhhcCcchhhcEEEEEEeecCCeEEEEEEECCCCcEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCCeEEEEEEc
Confidence            344555668899999999986            5668999986432   233456889999999999999998       


Q ss_pred             --------------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCC
Q 045449          678 --------------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSG  725 (823)
Q Consensus       678 --------------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~  725 (823)
                                                      +++|++.+|+|+|+.+|+||||||+||+++.++.+||+|||+++....
T Consensus       115 ~~~~~lv~Ey~~gg~L~~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDLkp~NIll~~~~~ikL~DfG~a~~~~~  194 (371)
T cd05622         115 DRYLYMVMEYMPGGDLVNLMSNYDVPEKWARFYTAEVVLALDAIHSMGFIHRDVKPDNMLLDKSGHLKLADFGTCMKMNK  194 (371)
T ss_pred             CCEEEEEEcCCCCCcHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHCCEEeCCCCHHHEEECCCCCEEEEeCCceeEcCc
Confidence                                            357889999999999999999999999999999999999999987643


Q ss_pred             CCccccccccccCCCcCcccccCCC----ccccccceehhhhhhccccCCCCCcCCC
Q 045449          726 EDQLSKQTQTLATIGYMAPEYGTKG----RVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       726 ~~~~~~~~~~~gt~~y~aPE~~~~~----~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      ... ......+||+.|+|||++.+.    .++.++||||+||++|+|++|..||...
T Consensus       195 ~~~-~~~~~~~gt~~y~aPE~l~~~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~  250 (371)
T cd05622         195 EGM-VRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYAD  250 (371)
T ss_pred             CCc-ccccCcccCccccCHHHHhccCCCccCCCccceeehhHHHHHHHhCCCCCCCC
Confidence            322 122346799999999998653    3789999999999999999999999754

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, an

>cd05627 STKc_NDR2 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2

Probab=99.88  E-value=2.7e-23  Score=229.22  Aligned_cols=150  Identities=24%  Similarity=0.294  Sum_probs=123.6

Q ss_pred             cCCccceeeccC------------CeEEEEEEehHhh---HHHHHHHHHHHHHHhhcchhhHHH----------------
Q 045449          629 RFSENNLIGIGN------------GMEVAVKVFHQQY---ERALKSFEDECEVRKRIRHRNLVK----------------  677 (823)
Q Consensus       629 ~f~~~~~lg~g~------------~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~----------------  677 (823)
                      +|...+.||.|+            +..||||+++...   ....+.+.+|+.++.+++|++|++                
T Consensus         2 ~f~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~iv~~~~~~~~~~~~~lv~E   81 (360)
T cd05627           2 DFESLKVIGRGAFGEVRLVQKKDTGHIYAMKILRKADMLEKEQVAHIRAERDILVEADGAWVVKMFYSFQDKRNLYLIME   81 (360)
T ss_pred             CceEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCEEEEEEe
Confidence            566677788775            5679999997543   334567889999999999999998                


Q ss_pred             ------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCcc----
Q 045449          678 ------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQL----  729 (823)
Q Consensus       678 ------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~----  729 (823)
                                              +++|++.+|+|+|+.+|+||||||+|||++.++.+||+|||+++........    
T Consensus        82 ~~~gg~L~~~l~~~~~l~~~~~~~~~~qi~~~L~~lH~~givHrDLkp~NIli~~~~~vkL~DfG~~~~~~~~~~~~~~~  161 (360)
T cd05627          82 FLPGGDMMTLLMKKDTLSEEATQFYIAETVLAIDAIHQLGFIHRDIKPDNLLLDAKGHVKLSDFGLCTGLKKAHRTEFYR  161 (360)
T ss_pred             CCCCccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeEccCCCHHHEEECCCCCEEEeeccCCccccccccccccc
Confidence                                    3678999999999999999999999999999999999999998754321100    


Q ss_pred             -----------------------------ccccccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCC
Q 045449          730 -----------------------------SKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       730 -----------------------------~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                                                   ......+||+.|+|||++.+..++.++||||+||++|++++|..||.+.
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~~~~~~~~~~~DiwSlGvilyel~tG~~Pf~~~  239 (360)
T cd05627         162 NLTHNPPSDFSFQNMNSKRKAETWKKNRRQLAYSTVGTPDYIAPEVFMQTGYNKLCDWWSLGVIMYEMLIGYPPFCSE  239 (360)
T ss_pred             ccccCCcccccccccccccccccccccccccccccCCCccccCHHHHcCCCCCCcceeccccceeeecccCCCCCCCC
Confidence                                         0012357999999999999999999999999999999999999999654

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. In addition, NDR2 plays a role in regul

>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]

Probab=99.88  E-value=9.6e-24  Score=230.79  Aligned_cols=135  Identities=30%  Similarity=0.420  Sum_probs=115.8

Q ss_pred             CeEEEEEEehHhh-HHHHHHHHHHHHHHhhcchhhHHH------------------------------------------
Q 045449          641 GMEVAVKVFHQQY-ERALKSFEDECEVRKRIRHRNLVK------------------------------------------  677 (823)
Q Consensus       641 ~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~------------------------------------------  677 (823)
                      |..||||.++... ....+...+|++++++++|+|||+                                          
T Consensus        38 G~~vAvK~~~~~~~~r~~e~~~~EieilkKLnh~NIVk~f~iee~~~~~~~~~~~vlvmEyC~gGsL~~~L~~PEN~~GL  117 (732)
T KOG4250|consen   38 GRLVAVKTFNKESSLRPRERWCREIEILKKLNHPNIVKLFDIEETKFLGLVTRLPVLVMEYCSGGSLRKVLNSPENAYGL  117 (732)
T ss_pred             ccchhHHhhhhhcccchHHHHHHHHHHHHHcCchhhhhhcccCCccccCcccccceEEEeecCCCcHHHHhcCcccccCC
Confidence            6789999998644 345578999999999999999999                                          


Q ss_pred             -------HHHHHHHHhhhcCCCCEEeccCCCCCEEeC--C--CCcEEEeecccccccCCCCccccccccccCCCcCcccc
Q 045449          678 -------IISSSLEYLHFGHSIPIIHCDLKPSNVLLD--E--DMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEY  746 (823)
Q Consensus       678 -------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~--~--~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~  746 (823)
                             ++..+..+|+|+|++|||||||||.||++-  .  ....||+|||.||.+....   .....+||+.|.+||+
T Consensus       118 pE~e~l~lL~d~~~al~~LrEn~IvHRDlKP~NIvl~~Gedgq~IyKLtDfG~Arel~d~s---~~~S~vGT~~YLhPel  194 (732)
T KOG4250|consen  118 PESEFLDLLSDLVSALRHLRENGIVHRDLKPGNIVLQIGEDGQSIYKLTDFGAARELDDNS---LFTSLVGTEEYLHPEL  194 (732)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHcCceeccCCCCcEEEeecCCCceEEeeecccccccCCCCC---eeeeecCchhhcChHH
Confidence                   245677889999999999999999999983  3  3367999999999886554   4567899999999999


Q ss_pred             cCC-CccccccceehhhhhhccccCCCCCcCCC
Q 045449          747 GTK-GRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       747 ~~~-~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      ... +.|+..+|.|||||++|+..||..||-..
T Consensus       195 ~E~q~~y~~tVDLWS~GvtlY~caTG~lPF~p~  227 (732)
T KOG4250|consen  195 YERQKKYTATVDLWSFGVTLYECATGELPFIPF  227 (732)
T ss_pred             HhhccCcCceeehhhhhhHHHHHhccCCCCCcC
Confidence            885 78899999999999999999999998554

>cd05573 STKc_ROCK_NDR_like Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases

Probab=99.88  E-value=2.6e-23  Score=228.57  Aligned_cols=150  Identities=25%  Similarity=0.309  Sum_probs=125.7

Q ss_pred             cCCccceeeccC------------CeEEEEEEehHhh---HHHHHHHHHHHHHHhhcchhhHHH----------------
Q 045449          629 RFSENNLIGIGN------------GMEVAVKVFHQQY---ERALKSFEDECEVRKRIRHRNLVK----------------  677 (823)
Q Consensus       629 ~f~~~~~lg~g~------------~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~----------------  677 (823)
                      +|...+.||.|+            +..||||++....   ....+.+.+|++++..++|+||++                
T Consensus         2 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e   81 (350)
T cd05573           2 DFEVIKVIGRGAFGEVWLVRDKDTGQVYAMKVLRKSDMIKRNQIAHVRAERDILADADSPWIVKLYYSFQDEEHLYLVME   81 (350)
T ss_pred             CceEEEEEEeCCcEEEEEEEECCCCCEEEEEEEEHHHHhhccHHHHHHHHHHHHHhcCCCCccchhhheecCCeEEEEEc
Confidence            566677788775            5679999997543   234567899999999999999998                


Q ss_pred             ------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCC------
Q 045449          678 ------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGED------  727 (823)
Q Consensus       678 ------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~------  727 (823)
                                              ++.|++.+|+|+|+.||+||||||+||+++.++.+||+|||+++......      
T Consensus        82 ~~~~~~L~~~l~~~~~l~~~~~~~i~~qi~~aL~~LH~~giiH~Dlkp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~  161 (350)
T cd05573          82 YMPGGDLMNLLIRKDVFPEETARFYIAELVLALDSVHKLGFIHRDIKPDNILIDADGHIKLADFGLCKKMNKAKDREYYL  161 (350)
T ss_pred             CCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHeEECCCCCEEeecCCCCccCcccCcccccc
Confidence                                    35688999999999999999999999999999999999999998764332      


Q ss_pred             ---------------------ccccccccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCC
Q 045449          728 ---------------------QLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       728 ---------------------~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                                           .........||+.|+|||++.+..++.++|||||||++|++++|..||...
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~ell~g~~Pf~~~  233 (350)
T cd05573         162 NDSHNLLFRDNVLVRRRDHKQRRVRANSTVGTPDYIAPEVLRGTPYGLECDWWSLGVILYEMLYGFPPFYSD  233 (350)
T ss_pred             cccccccccccccccccccccccccccccccCccccCHHHHcCCCCCCceeeEecchhhhhhccCCCCCCCC
Confidence                                 001123457999999999999999999999999999999999999999764

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the

>PTZ00426 cAMP-dependent protein kinase catalytic subunit; Provisional

Probab=99.88  E-value=2.4e-23  Score=227.10  Aligned_cols=146  Identities=24%  Similarity=0.293  Sum_probs=123.4

Q ss_pred             ccCCccceeeccC-------------CeEEEEEEehHhh---HHHHHHHHHHHHHHhhcchhhHHH--------------
Q 045449          628 DRFSENNLIGIGN-------------GMEVAVKVFHQQY---ERALKSFEDECEVRKRIRHRNLVK--------------  677 (823)
Q Consensus       628 ~~f~~~~~lg~g~-------------~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~--------------  677 (823)
                      ++|...+.||.|+             +..||||++....   ....+.+.+|++++++++||||++              
T Consensus        30 ~~y~~~~~ig~G~~g~Vy~a~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~~~lv  109 (340)
T PTZ00426         30 EDFNFIRTLGTGSFGRVILATYKNEDFPPVAIKRFEKSKIIKQKQVDHVFSERKILNYINHPFCVNLYGSFKDESYLYLV  109 (340)
T ss_pred             hhcEEEEEEeecCCeEEEEEEEECCCCeEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCCcceEEEEEeCCEEEEE
Confidence            3566667777775             2469999986542   334567889999999999999998              


Q ss_pred             --------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCcccc
Q 045449          678 --------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSK  731 (823)
Q Consensus       678 --------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~  731 (823)
                                                ++.|++.+|+|+|+.+|+||||||+|||++.++.+||+|||+++.....     
T Consensus       110 ~Ey~~~g~L~~~i~~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDLkp~NILl~~~~~ikL~DFG~a~~~~~~-----  184 (340)
T PTZ00426        110 LEFVIGGEFFTFLRRNKRFPNDVGCFYAAQIVLIFEYLQSLNIVYRDLKPENLLLDKDGFIKMTDFGFAKVVDTR-----  184 (340)
T ss_pred             EeCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeEccCCCHHHEEECCCCCEEEecCCCCeecCCC-----
Confidence                                      3568899999999999999999999999999999999999999875422     


Q ss_pred             ccccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCC
Q 045449          732 QTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       732 ~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      .....||+.|+|||++.+..++.++||||+||++|++++|..||...
T Consensus       185 ~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~ell~G~~Pf~~~  231 (340)
T PTZ00426        185 TYTLCGTPEYIAPEILLNVGHGKAADWWTLGIFIYEILVGCPPFYAN  231 (340)
T ss_pred             cceecCChhhcCHHHHhCCCCCccccccchhhHHHHHhcCCCCCCCC
Confidence            23457999999999998888999999999999999999999999764

>cd05585 STKc_YPK1_like Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases

Probab=99.88  E-value=2.2e-23  Score=225.10  Aligned_cols=137  Identities=23%  Similarity=0.212  Sum_probs=116.8

Q ss_pred             CCeEEEEEEehHhh---HHHHHHHHHHHHHHhhcchhhHHH---------------------------------------
Q 045449          640 NGMEVAVKVFHQQY---ERALKSFEDECEVRKRIRHRNLVK---------------------------------------  677 (823)
Q Consensus       640 ~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~---------------------------------------  677 (823)
                      .+..||+|++....   ......+.+|++++.+++||||++                                       
T Consensus        17 ~~~~~aiK~i~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~   96 (312)
T cd05585          17 TQRIYALKTIRKAHIVSRSEVTHTLAERTVLAQVNCPFIVPLKFSFQSPEKLYLVLAFINGGELFHHLQREGRFDLSRAR   96 (312)
T ss_pred             CCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCcEeceeeEEecCCeEEEEEcCCCCCcHHHHHHhcCCCCHHHHH
Confidence            35789999997543   344567889999999999999998                                       


Q ss_pred             -HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccCCCcccccc
Q 045449          678 -IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRG  756 (823)
Q Consensus       678 -~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~  756 (823)
                       ++.|++++|+|+|+.+|+||||||+||+++.++.+||+|||+++.......  .....+||+.|+|||++.+..++.++
T Consensus        97 ~~~~qi~~~l~~lH~~~i~HrDlkp~Nili~~~~~~kl~Dfg~~~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~  174 (312)
T cd05585          97 FYTAELLCALENLHKFNVIYRDLKPENILLDYQGHIALCDFGLCKLNMKDDD--KTNTFCGTPEYLAPELLLGHGYTKAV  174 (312)
T ss_pred             HHHHHHHHHHHHHHhCCeEeCCCCHHHeEECCCCcEEEEECcccccCccCCC--ccccccCCcccCCHHHHcCCCCCCcc
Confidence             356889999999999999999999999999999999999999986432221  22345799999999999998999999


Q ss_pred             ceehhhhhhccccCCCCCcCCC
Q 045449          757 DVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       757 Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      ||||+||++|++++|..||.+.
T Consensus       175 DvwslGvil~el~tg~~pf~~~  196 (312)
T cd05585         175 DWWTLGVLLYEMLTGLPPFYDE  196 (312)
T ss_pred             ceechhHHHHHHHhCCCCcCCC
Confidence            9999999999999999998653

Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It pl

>cd05600 STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases

Probab=99.88  E-value=4e-23  Score=225.38  Aligned_cols=145  Identities=23%  Similarity=0.278  Sum_probs=124.0

Q ss_pred             cCCccceeeccC------------CeEEEEEEehHhh---HHHHHHHHHHHHHHhhcchhhHHH----------------
Q 045449          629 RFSENNLIGIGN------------GMEVAVKVFHQQY---ERALKSFEDECEVRKRIRHRNLVK----------------  677 (823)
Q Consensus       629 ~f~~~~~lg~g~------------~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~----------------  677 (823)
                      +|...+.||.|+            +..||||++....   ....+.+.+|++++.+++||||++                
T Consensus         2 ~y~~~~~ig~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~iv~~~~~~~~~~~~~lv~e   81 (333)
T cd05600           2 DFQILTQVGQGGYGQVFLAKKKDTGEIVALKRMKKSLLFKLNEVRHVLTERDILTTTKSEWLVKLLYAFQDDEYLYLAME   81 (333)
T ss_pred             CcEEEEEEeecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhCCCCCCccEEEEEEcCCEEEEEEe
Confidence            566667777774            5679999997553   234567889999999999999998                


Q ss_pred             ------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCcccccc
Q 045449          678 ------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQT  733 (823)
Q Consensus       678 ------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~  733 (823)
                                              ++.|++.+|.|+|+.+|+||||||+||+++.++.+||+|||+++....     ...
T Consensus        82 ~~~g~~L~~~l~~~~~l~~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~Nil~~~~~~~kL~Dfg~a~~~~~-----~~~  156 (333)
T cd05600          82 YVPGGDFRTLLNNLGVLSEDHARFYMAEMFEAVDALHELGYIHRDLKPENFLIDASGHIKLTDFGLSKGIVT-----YAN  156 (333)
T ss_pred             CCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCCHHHEEECCCCCEEEEeCcCCccccc-----ccC
Confidence                                    356889999999999999999999999999999999999999986543     223


Q ss_pred             ccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCC
Q 045449          734 QTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       734 ~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      ...||+.|+|||++.+..++.++||||+||++|++++|..||...
T Consensus       157 ~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~ell~g~~pf~~~  201 (333)
T cd05600         157 SVVGSPDYMAPEVLRGKGYDFTVDYWSLGCMLYEFLCGFPPFSGS  201 (333)
T ss_pred             CcccCccccChhHhcCCCCCCccceecchHHHhhhhhCCCCCCCC
Confidence            457999999999999889999999999999999999999998654

Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis.

>PTZ00283 serine/threonine protein kinase; Provisional

Probab=99.88  E-value=1e-23  Score=240.66  Aligned_cols=155  Identities=23%  Similarity=0.277  Sum_probs=128.9

Q ss_pred             HHHhccCCccceeeccC------------CeEEEEEEehHh--hHHHHHHHHHHHHHHhhcchhhHHH------------
Q 045449          624 LRATDRFSENNLIGIGN------------GMEVAVKVFHQQ--YERALKSFEDECEVRKRIRHRNLVK------------  677 (823)
Q Consensus       624 ~~at~~f~~~~~lg~g~------------~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~------------  677 (823)
                      ....++|...+.||.|+            +..||||++...  .......+.+|+..+..++|+|+++            
T Consensus        28 ~~~~~rY~i~~~LG~G~fG~Vy~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~Ei~~l~~~~h~~iv~~~~~~~~~~~~~  107 (496)
T PTZ00283         28 KEQAKKYWISRVLGSGATGTVLCAKRVSDGEPFAVKVVDMEGMSEADKNRAQAEVCCLLNCDFFSIVKCHEDFAKKDPRN  107 (496)
T ss_pred             cccCCCEEEEEEEecCCCEEEEEEEEcCCCCEEEEEEEecccCCHHHHHHHHHHHHHHhcCCCCcEEEeecceecccccC
Confidence            33456888889999886            567999998643  2344567889999999998888774            


Q ss_pred             ----------------------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeec
Q 045449          678 ----------------------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDF  717 (823)
Q Consensus       678 ----------------------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~Df  717 (823)
                                                              ++.|++.+|+|+|+.+|+||||||+|||++.++.+||+||
T Consensus       108 ~~~~~~i~lV~Ey~~~gsL~~~l~~~~~~~~~l~e~~~~~i~~qll~aL~~lH~~~IiHrDLKP~NILl~~~~~vkL~DF  187 (496)
T PTZ00283        108 PENVLMIALVLDYANAGDLRQEIKSRAKTNRTFREHEAGLLFIQVLLAVHHVHSKHMIHRDIKSANILLCSNGLVKLGDF  187 (496)
T ss_pred             cccceEEEEEEeCCCCCcHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHEEEeCCCCEEEEec
Confidence                                                    2468899999999999999999999999999999999999


Q ss_pred             ccccccCCCCccccccccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCC
Q 045449          718 GIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       718 Gla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      |+++.+............+||+.|+|||++.+..++.++|||||||++|++++|..||...
T Consensus       188 Gls~~~~~~~~~~~~~~~~Gt~~Y~aPE~~~~~~~s~k~DVwSlGvilyeLltG~~Pf~~~  248 (496)
T PTZ00283        188 GFSKMYAATVSDDVGRTFCGTPYYVAPEIWRRKPYSKKADMFSLGVLLYELLTLKRPFDGE  248 (496)
T ss_pred             ccCeeccccccccccccccCCcceeCHHHhCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCC
Confidence            9998764332222234567999999999999989999999999999999999999999754

>KOG0586 consensus Serine/threonine protein kinase [General function prediction only]

Probab=99.88  E-value=3.8e-23  Score=223.29  Aligned_cols=149  Identities=27%  Similarity=0.390  Sum_probs=128.9

Q ss_pred             hccCCccceeeccC------------CeEEEEEEehHhh--HHHHHHHHHHHHHHhhcchhhHHH---------------
Q 045449          627 TDRFSENNLIGIGN------------GMEVAVKVFHQQY--ERALKSFEDECEVRKRIRHRNLVK---------------  677 (823)
Q Consensus       627 t~~f~~~~~lg~g~------------~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~---------------  677 (823)
                      +..|.....||.|.            +..||||.+++..  ....+.+.+|+++|..+.|||||+               
T Consensus        55 vg~y~i~~tig~g~f~~V~La~~~~t~~~VaiK~idkt~ln~~~~~k~~rev~imk~l~HPnIvkl~~v~~t~~~lylV~  134 (596)
T KOG0586|consen   55 VGLYVIIKTIGKGNFAKVKLARHILTGTEVAIKIIDKTQLNPSKRQKLGREVDIMKSLNHPNIVKLFSVIETEATLYLVM  134 (596)
T ss_pred             ccceeeeeeeccceeEEEEeeEecCCCceEEEEEehhcccChHHHHHHHHHHHHHHhcCCcceeeeeeeeeecceeEEEE
Confidence            45566667777764            6789999998765  344466999999999999999998               


Q ss_pred             -------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccc
Q 045449          678 -------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQ  732 (823)
Q Consensus       678 -------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~  732 (823)
                                               .+.|++.+++|+|+..|||||||++|||++.+..+||+|||++..+.....   .
T Consensus       135 eya~~ge~~~yl~~~gr~~e~~ar~~F~q~vsaveYcH~k~ivHrdLk~eNilL~~~mnikIaDfgfS~~~~~~~~---l  211 (596)
T KOG0586|consen  135 EYASGGELFDYLVKHGRMKEKEARAKFRQIVSAVEYCHSKNIVHRDLKAENILLDENMNIKIADFGFSTFFDYGLM---L  211 (596)
T ss_pred             EeccCchhHHHHHhcccchhhhhhhhhHHHHHHHHHHhhcceeccccchhhcccccccceeeeccccceeeccccc---c
Confidence                                     256899999999999999999999999999999999999999998864433   3


Q ss_pred             cccccCCCcCcccccCCCcc-ccccceehhhhhhccccCCCCCcCCC
Q 045449          733 TQTLATIGYMAPEYGTKGRV-STRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       733 ~~~~gt~~y~aPE~~~~~~~-~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      .+.+|++.|+|||++.+..| ++++|+||+|||+|-+..|..||++.
T Consensus       212 qt~cgsppyAaPEl~~g~~y~gpe~D~Wslgvvly~LV~GsLPFDG~  258 (596)
T KOG0586|consen  212 QTFCGSPPYAAPELFNGKKYDGPEVDIWSLGVVLYALVEGSLPFDGQ  258 (596)
T ss_pred             cccCCCCCccChHhhcCcccCCcceehhhhhhhheeeeecccccCCc
Confidence            46789999999999998887 78899999999999999999999864

>KOG2345 consensus Serine/threonine protein kinase/TGF-beta stimulated factor [Transcription; Lipid transport and metabolism; Signal transduction mechanisms]

Probab=99.88  E-value=1.8e-23  Score=201.08  Aligned_cols=153  Identities=21%  Similarity=0.261  Sum_probs=122.1

Q ss_pred             ccCCccceeeccC------------CeEEEEEEehHhhHHHHHHHHHHHHHHhhcchhhHHHH-----------------
Q 045449          628 DRFSENNLIGIGN------------GMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVKI-----------------  678 (823)
Q Consensus       628 ~~f~~~~~lg~g~------------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~-----------------  678 (823)
                      ++|...+.+|+|+            +..+|+|++.-...+..+...+|++..++++|||+++.                 
T Consensus        21 ~Ryri~~~LgeGGfsfv~LV~~~s~~~~YAlKkI~c~~~~~~e~~~rEid~~rkf~s~~vl~l~dh~l~~~~D~~~~~yl  100 (302)
T KOG2345|consen   21 KRYRIQRLLGEGGFSFVDLVKGLSTGHLYALKKILCHSQEDIEEALREIDNHRKFNSPNVLRLVDHQLREEKDGKHEAYL  100 (302)
T ss_pred             ceEEEeeeecCCCceeeeeecccCcccchhhheeeccchHHHHHHHHHHHHHHhhCCcchHHHHHHHHHhhccCceeEEE
Confidence            4666667777776            45589999877767777899999999999999999992                 


Q ss_pred             --------------------------------HHHHHHHhhhcCCCC--EEeccCCCCCEEeCCCCcEEEeecccccccC
Q 045449          679 --------------------------------ISSSLEYLHFGHSIP--IIHCDLKPSNVLLDEDMVAHISDFGIAKLLS  724 (823)
Q Consensus       679 --------------------------------~~~~l~~L~~~h~~~--ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~  724 (823)
                                                      +.+++++|.++|+..  .+||||||.|||+.+++.+++.|||.++...
T Consensus       101 l~Pyy~~Gsl~d~i~~~k~kg~~~sE~~iL~if~gic~gL~~lH~~~~~yAH~DiKP~NILls~~~~~vl~D~GS~~~a~  180 (302)
T KOG2345|consen  101 LLPYYKRGSLLDEIERLKIKGNFVSEAQILWIFLGICRGLEALHEKEPPYAHRDIKPANILLSDSGLPVLMDLGSATQAP  180 (302)
T ss_pred             EeehhccccHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHhccCCcccccCCCcceeEecCCCceEEEeccCccccc
Confidence                                            345677788888877  9999999999999999999999999987643


Q ss_pred             CCCc-------cccccccccCCCcCcccccCC---CccccccceehhhhhhccccCCCCCcCCCcc
Q 045449          725 GEDQ-------LSKQTQTLATIGYMAPEYGTK---GRVSTRGDVCSFGIISGGKETRSMTVGETCT  780 (823)
Q Consensus       725 ~~~~-------~~~~~~~~gt~~y~aPE~~~~---~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~~~  780 (823)
                      -.-.       .........|..|+|||.+.-   ...++++||||+||++|.++++..||+....
T Consensus       181 i~i~~~~~a~~lQe~a~e~Ct~pyRAPELf~vk~~~ti~ertDIWSLGCtLYa~mf~~sPfe~~~~  246 (302)
T KOG2345|consen  181 IQIEGSRQALRLQEWAEERCTIPYRAPELFNVKSHCTITERTDIWSLGCTLYAMMFGESPFERIYQ  246 (302)
T ss_pred             eEeechHHHHHHHHHHHHhCCCcccCchheecccCcccccccchhhhhHHHHHHHHcCCcchHHhh
Confidence            2110       111223457999999998754   3468999999999999999999999977654

>PTZ00267 NIMA-related protein kinase; Provisional

Probab=99.88  E-value=2e-23  Score=238.12  Aligned_cols=149  Identities=25%  Similarity=0.266  Sum_probs=125.2

Q ss_pred             CCccceeeccC-------------CeEEEEEEehHhhHHHHHHHHHHHHHHhhcchhhHHH-------------------
Q 045449          630 FSENNLIGIGN-------------GMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVK-------------------  677 (823)
Q Consensus       630 f~~~~~lg~g~-------------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~-------------------  677 (823)
                      |...+.+|+|+             +..||+|.+..........+.+|++++++++|||||+                   
T Consensus        69 y~~~~~lg~G~~g~vy~a~~~~~~~~~vv~K~~~~~~~~~~~~~~~E~~~l~~l~Hpniv~~~~~~~~~~~~~lv~E~~~  148 (478)
T PTZ00267         69 YVLTTLVGRNPTTAAFVATRGSDPKEKVVAKFVMLNDERQAAYARSELHCLAACDHFGIVKHFDDFKSDDKLLLIMEYGS  148 (478)
T ss_pred             EEEEEEEEeCCCcEEEEEEEcCCCCeEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCEeEEEEEEEECCEEEEEEECCC
Confidence            66677888775             3457888775555555567889999999999999998                   


Q ss_pred             -------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccc
Q 045449          678 -------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQ  732 (823)
Q Consensus       678 -------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~  732 (823)
                                               +++|++.+|+|+|+++|+||||||+|||++.++.+||+|||+++...........
T Consensus       149 gg~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~lH~~~ivHrDlkp~NIll~~~~~~kL~DFgla~~~~~~~~~~~~  228 (478)
T PTZ00267        149 GGDLNKQIKQRLKEHLPFQEYEVGLLFYQIVLALDEVHSRKMMHRDLKSANIFLMPTGIIKLGDFGFSKQYSDSVSLDVA  228 (478)
T ss_pred             CCCHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhCCEEECCcCHHhEEECCCCcEEEEeCcCceecCCccccccc
Confidence                                     3568899999999999999999999999999999999999999876543322223


Q ss_pred             cccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCC
Q 045449          733 TQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       733 ~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      ...+||+.|+|||++.+..++.++|||||||+++++++|..||...
T Consensus       229 ~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~~Pf~~~  274 (478)
T PTZ00267        229 SSFCGTPYYLAPELWERKRYSKKADMWSLGVILYELLTLHRPFKGP  274 (478)
T ss_pred             cccCCCccccCHhHhCCCCCCcHHhHHHHHHHHHHHHhCCCCCCCC
Confidence            4567999999999999989999999999999999999999998654

>KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.88  E-value=3.4e-23  Score=205.51  Aligned_cols=149  Identities=23%  Similarity=0.254  Sum_probs=127.3

Q ss_pred             ccCCccceeeccC------------CeEEEEEEehHhh---HHHHHHHHHHHHHHhhcchhhHHH---------------
Q 045449          628 DRFSENNLIGIGN------------GMEVAVKVFHQQY---ERALKSFEDECEVRKRIRHRNLVK---------------  677 (823)
Q Consensus       628 ~~f~~~~~lg~g~------------~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~---------------  677 (823)
                      ++|+.-+++|+|.            ++.+|+|+++++.   +..+..-..|-+++...+||.+..               
T Consensus       168 ~dFdfLKvLGkGTFGKVIL~rEKat~k~YAiKIlkKeviiakdEVAHTlTE~RVL~~~~HPFLt~LKYsFQt~drlCFVM  247 (516)
T KOG0690|consen  168 EDFDFLKVLGKGTFGKVILCREKATGKLYAIKILKKEVIIAKDEVAHTLTENRVLQNCRHPFLTSLKYSFQTQDRLCFVM  247 (516)
T ss_pred             chhhHHHHhcCCccceEEEEeecccCceeehhhhhhhheeehHHhhhhhhHHHHHHhccCcHHHHhhhhhccCceEEEEE
Confidence            5677778888885            5679999998765   334456678999999999999887               


Q ss_pred             -------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccc
Q 045449          678 -------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQ  732 (823)
Q Consensus       678 -------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~  732 (823)
                                               +-|.++.+|.|+|+++||.||+|.+|.|+|.||++||+|||+++.--.  .....
T Consensus       248 eyanGGeLf~HLsrer~FsE~RtRFYGaEIvsAL~YLHs~~ivYRDlKLENLlLDkDGHIKitDFGLCKE~I~--~g~t~  325 (516)
T KOG0690|consen  248 EYANGGELFFHLSRERVFSEDRTRFYGAEIVSALGYLHSRNIVYRDLKLENLLLDKDGHIKITDFGLCKEEIK--YGDTT  325 (516)
T ss_pred             EEccCceEeeehhhhhcccchhhhhhhHHHHHHhhhhhhCCeeeeechhhhheeccCCceEeeecccchhccc--cccee
Confidence                                     236889999999999999999999999999999999999999986322  22345


Q ss_pred             cccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCC
Q 045449          733 TQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       733 ~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      .+++|||.|.|||++....|+..+|+|.+|||+|||+.|+.||..-
T Consensus       326 kTFCGTPEYLAPEVleDnDYgraVDWWG~GVVMYEMmCGRLPFyn~  371 (516)
T KOG0690|consen  326 KTFCGTPEYLAPEVLEDNDYGRAVDWWGVGVVMYEMMCGRLPFYNK  371 (516)
T ss_pred             ccccCChhhcCchhhccccccceeehhhhhHHHHHHHhccCccccc
Confidence            6789999999999999999999999999999999999999999653

>cd05584 STKc_p70S6K Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase

Probab=99.88  E-value=8.8e-23  Score=221.57  Aligned_cols=138  Identities=26%  Similarity=0.286  Sum_probs=116.2

Q ss_pred             cCCeEEEEEEehHhh----HHHHHHHHHHHHHHhhcchhhHHH-------------------------------------
Q 045449          639 GNGMEVAVKVFHQQY----ERALKSFEDECEVRKRIRHRNLVK-------------------------------------  677 (823)
Q Consensus       639 g~~~~vavK~~~~~~----~~~~~~~~~E~~~l~~l~h~niv~-------------------------------------  677 (823)
                      ..+..||||++....    ......+..|++++++++||||++                                     
T Consensus        22 ~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~il~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~  101 (323)
T cd05584          22 DTGKIFAMKVLKKATIVRNQKDTAHTKAERNILEAVKHPFIVDLIYAFQTGGKLYLILEYLSGGELFMHLEREGIFMEDT  101 (323)
T ss_pred             CCCCEEEEEEEEHHHHHhhhhhHHHHHHHHHHHHhCCCCchhceeeEEecCCeEEEEEeCCCCchHHHHHHHcCCCCHHH
Confidence            346789999997542    233456789999999999999998                                     


Q ss_pred             ---HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccCCCcccc
Q 045449          678 ---IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVST  754 (823)
Q Consensus       678 ---~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~  754 (823)
                         ++.|++.+|+|+|+.+|+||||||+||+++.++.+||+|||+++.......  ......||+.|+|||++.+..++.
T Consensus       102 ~~~~~~qi~~~l~~lH~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~  179 (323)
T cd05584         102 ACFYLSEISLALEHLHQQGIIYRDLKPENILLDAQGHVKLTDFGLCKESIHEGT--VTHTFCGTIEYMAPEILMRSGHGK  179 (323)
T ss_pred             HHHHHHHHHHHHHHHHHCCeecCCCCHHHeEECCCCCEEEeeCcCCeecccCCC--cccccCCCccccChhhccCCCCCC
Confidence               256889999999999999999999999999999999999999975432222  223457999999999999888999


Q ss_pred             ccceehhhhhhccccCCCCCcCCC
Q 045449          755 RGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       755 ~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      ++||||+||++|++++|..||...
T Consensus       180 ~~DiwslG~il~ell~G~~pf~~~  203 (323)
T cd05584         180 AVDWWSLGALMYDMLTGAPPFTAE  203 (323)
T ss_pred             cceecccHHHHHHHhcCCCCCCCC
Confidence            999999999999999999998664

Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the in

>KOG0666 consensus Cyclin C-dependent kinase CDK8 [Transcription]

Probab=99.88  E-value=6.4e-24  Score=209.85  Aligned_cols=143  Identities=27%  Similarity=0.321  Sum_probs=115.8

Q ss_pred             EEEEEEehHhh--HHHHHHHHHHHHHHhhcchhhHHH-------------------------------------------
Q 045449          643 EVAVKVFHQQY--ERALKSFEDECEVRKRIRHRNLVK-------------------------------------------  677 (823)
Q Consensus       643 ~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~-------------------------------------------  677 (823)
                      .+|+|.++.+.  ........+|+.+++.++|||++.                                           
T Consensus        55 ~yAiKkfk~~kd~tGiS~SAcREiaL~REl~h~nvi~Lv~Vfl~~d~~v~l~fdYAEhDL~~II~fHr~~~~~~lp~~mv  134 (438)
T KOG0666|consen   55 EYAIKKFKGEKDGTGISMSACREIALLRELKHPNVISLVKVFLSHDKKVWLLFDYAEHDLWHIIKFHRASKAKQLPRSMV  134 (438)
T ss_pred             hhHHHHHhccCCCCCcCHHHHHHHHHHHHhcCCcchhHHHHHhccCceEEEEehhhhhhHHHHHHHhccchhccCCHHHH
Confidence            45666654332  122356789999999999999998                                           


Q ss_pred             --HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCC----CcEEEeecccccccCCCCcc-ccccccccCCCcCcccccCCC
Q 045449          678 --IISSSLEYLHFGHSIPIIHCDLKPSNVLLDED----MVAHISDFGIAKLLSGEDQL-SKQTQTLATIGYMAPEYGTKG  750 (823)
Q Consensus       678 --~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~----~~~kl~DfGla~~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~  750 (823)
                        ++.|++.++||+|+.=|+|||+||.|||+..+    |++||+|||+||.+...-.. .....++-|.+|+|||.+.+.
T Consensus       135 KsilwQil~Gv~YLH~NWvlHRDLKPaNIlvmgdgperG~VKIaDlGlaR~~~~plkpl~s~d~VVVTiWYRAPELLLGa  214 (438)
T KOG0666|consen  135 KSILWQILDGVHYLHSNWVLHRDLKPANILVMGDGPERGRVKIADLGLARLFNNPLKPLASLDPVVVTIWYRAPELLLGA  214 (438)
T ss_pred             HHHHHHHHhhhHHHhhhheeeccCCcceEEEeccCCccCeeEeecccHHHHhhccccccccCCceEEEEEecChHHhccc
Confidence              35699999999999999999999999999877    89999999999987654332 233456789999999998876


Q ss_pred             c-cccccceehhhhhhccccCCCCCcCCCccccccc
Q 045449          751 R-VSTRGDVCSFGIISGGKETRSMTVGETCTPVRES  785 (823)
Q Consensus       751 ~-~~~~~Dv~S~Gvv~~~~~~~~~~~~~~~~~~~~~  785 (823)
                      + |+.+.||||.|||++|+++-+..|.+...++...
T Consensus       215 ~hYT~AiDvWAiGCIfaElLtl~PlF~g~E~k~~~~  250 (438)
T KOG0666|consen  215 RHYTKAIDVWAIGCIFAELLTLEPLFKGREEKIKTK  250 (438)
T ss_pred             ccccchhhhHHHHHHHHHHHccCccccchhhhcccC
Confidence            5 8999999999999999999998888766555544

>cd05596 STKc_ROCK Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase

Probab=99.88  E-value=3.1e-23  Score=229.13  Aligned_cols=152  Identities=20%  Similarity=0.246  Sum_probs=124.7

Q ss_pred             HhccCCccceeeccC------------CeEEEEEEehHhh---HHHHHHHHHHHHHHhhcchhhHHH-------------
Q 045449          626 ATDRFSENNLIGIGN------------GMEVAVKVFHQQY---ERALKSFEDECEVRKRIRHRNLVK-------------  677 (823)
Q Consensus       626 at~~f~~~~~lg~g~------------~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~-------------  677 (823)
                      ..++|...+.||.|+            +..||||++....   ....+.+.+|+.++++++||||++             
T Consensus        41 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~h~~iv~~~~~~~~~~~~~l  120 (370)
T cd05596          41 KAEDFDVIKVIGRGAFGEVQLVRHKSSKQVYAMKLLSKFEMIKRSDSAFFWEERDIMAHANSEWIVQLHYAFQDDKYLYM  120 (370)
T ss_pred             CHHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCcceEEEEEecCCEEEE
Confidence            356777788888875            5679999996532   233456889999999999999998             


Q ss_pred             --------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCcccc
Q 045449          678 --------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSK  731 (823)
Q Consensus       678 --------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~  731 (823)
                                                +++|++.+|+|+|+.+|+||||||+|||++.++.+||+|||+++....... ..
T Consensus       121 v~Ey~~gg~L~~~l~~~~l~~~~~~~~~~qi~~aL~~LH~~~ivHrDLkp~NILl~~~~~~kL~DfG~~~~~~~~~~-~~  199 (370)
T cd05596         121 VMEYMPGGDLVNLMSNYDIPEKWARFYTAEVVLALDAIHSMGFIHRDVKPDNMLLDKSGHLKLADFGTCMKMDANGM-VR  199 (370)
T ss_pred             EEcCCCCCcHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHEEEcCCCCEEEEeccceeeccCCCc-cc
Confidence                                      356889999999999999999999999999999999999999987643222 12


Q ss_pred             ccccccCCCcCcccccCCC----ccccccceehhhhhhccccCCCCCcCCC
Q 045449          732 QTQTLATIGYMAPEYGTKG----RVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       732 ~~~~~gt~~y~aPE~~~~~----~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      ....+||+.|+|||++.+.    .++.++||||+||++|++++|..||...
T Consensus       200 ~~~~~gt~~y~aPE~~~~~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~  250 (370)
T cd05596         200 CDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYAD  250 (370)
T ss_pred             CCCCCCCcCeECHHHhccCCCCCCCCCceeeeehhHHHHHHHhCCCCcCCC
Confidence            2345799999999987653    4789999999999999999999998754

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via in

>cd05601 STKc_CRIK Catalytic domain of the Protein Serine/Threonine Kinase, Citron Rho-interacting kinase

Probab=99.88  E-value=7.6e-23  Score=222.89  Aligned_cols=149  Identities=26%  Similarity=0.372  Sum_probs=123.4

Q ss_pred             cCCccceeeccC------------CeEEEEEEehHhh---HHHHHHHHHHHHHHhhcchhhHHH----------------
Q 045449          629 RFSENNLIGIGN------------GMEVAVKVFHQQY---ERALKSFEDECEVRKRIRHRNLVK----------------  677 (823)
Q Consensus       629 ~f~~~~~lg~g~------------~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~----------------  677 (823)
                      +|...+.||.|+            +..||||+++...   ....+.+.+|+.+++.++|+||++                
T Consensus         2 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~i~~~~~~~~i~~~~~~~~~~~~~~lv~e   81 (330)
T cd05601           2 DFDVKSLVGRGHFGEVQVVREKATGDIYAMKVMKKSVLLAQETVSFFEEERDILSISNSPWIPQLQYAFQDKDNLYLVME   81 (330)
T ss_pred             CceEEEEEEeccCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceeeEEecCCeEEEEEC
Confidence            566677777775            5679999997653   234567889999999999999998                


Q ss_pred             -------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccc
Q 045449          678 -------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQ  732 (823)
Q Consensus       678 -------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~  732 (823)
                                               ++.|++++|+|+|+.+|+||||||+||+++.++.+||+|||+++........ ..
T Consensus        82 ~~~~~~L~~~l~~~~~~l~~~~~~~~~~qi~~aL~~lH~~~i~H~Dlkp~NIll~~~~~~kL~Dfg~a~~~~~~~~~-~~  160 (330)
T cd05601          82 YQPGGDLLSLLNRYEDQFDEDMAQFYLAELVLAIHSVHQMGYVHRDIKPENVLIDRTGHIKLADFGSAARLTANKMV-NS  160 (330)
T ss_pred             CCCCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeEcccCchHheEECCCCCEEeccCCCCeECCCCCce-ee
Confidence                                     3568999999999999999999999999999999999999999876543321 22


Q ss_pred             cccccCCCcCcccccC------CCccccccceehhhhhhccccCCCCCcCCC
Q 045449          733 TQTLATIGYMAPEYGT------KGRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       733 ~~~~gt~~y~aPE~~~------~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      ....||+.|+|||++.      ...++.++|||||||++|++++|..||.+.
T Consensus       161 ~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~el~~g~~Pf~~~  212 (330)
T cd05601         161 KLPVGTPDYIAPEVLTTMNGDGKGTYGVECDWWSLGVIAYEMIYGRSPFHEG  212 (330)
T ss_pred             ecccCCccccCHHHhccccccccCCCCCcceeecccceeeeeccCCCCCCCC
Confidence            3357999999999876      456789999999999999999999999653

Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnor

>cd05595 STKc_PKB_beta Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta

Probab=99.88  E-value=5.7e-23  Score=222.96  Aligned_cols=137  Identities=21%  Similarity=0.250  Sum_probs=116.2

Q ss_pred             CCeEEEEEEehHhh---HHHHHHHHHHHHHHhhcchhhHHH---------------------------------------
Q 045449          640 NGMEVAVKVFHQQY---ERALKSFEDECEVRKRIRHRNLVK---------------------------------------  677 (823)
Q Consensus       640 ~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~---------------------------------------  677 (823)
                      .|..||+|++....   ......+.+|++++++++||||++                                       
T Consensus        19 ~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~i~~~~~~~~~~~~~~lv~E~~~~~~L~~~l~~~~~~~~~~~~   98 (323)
T cd05595          19 TGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCFVMEYANGGELFFHLSRERVFTEERAR   98 (323)
T ss_pred             CCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCcceeeEEecCCEEEEEEeCCCCCcHHHHHHHcCCCCHHHHH
Confidence            36789999997653   234467889999999999999998                                       


Q ss_pred             -HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccCCCcccccc
Q 045449          678 -IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRG  756 (823)
Q Consensus       678 -~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~  756 (823)
                       ++.|++.+|+|+|+.+|+||||||+|||++.++.+||+|||+++.......  ......||+.|+|||++.+..++.++
T Consensus        99 ~~~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~kL~Dfg~~~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~  176 (323)
T cd05595          99 FYGAEIVSALEYLHSRDVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGA--TMKTFCGTPEYLAPEVLEDNDYGRAV  176 (323)
T ss_pred             HHHHHHHHHHHHHHHCCeEecCCCHHHEEEcCCCCEEecccHHhccccCCCC--ccccccCCcCcCCcccccCCCCCchh
Confidence             357889999999999999999999999999999999999999875422211  12345799999999999989999999


Q ss_pred             ceehhhhhhccccCCCCCcCCC
Q 045449          757 DVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       757 Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      |||||||++|++++|..||...
T Consensus       177 DiwSlGvil~ell~g~~Pf~~~  198 (323)
T cd05595         177 DWWGLGVVMYEMMCGRLPFYNQ  198 (323)
T ss_pred             chhhhHHHHHHHHhCCCCCCCC
Confidence            9999999999999999998654

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in

>KOG0667 consensus Dual-specificity tyrosine-phosphorylation regulated kinase [General function prediction only]

Probab=99.88  E-value=3.8e-23  Score=225.80  Aligned_cols=144  Identities=29%  Similarity=0.372  Sum_probs=120.4

Q ss_pred             cCCccceeeccC------------CeEEEEEEehHhhHHHHHHHHHHHHHHhhcc-hh-----hHHH-------------
Q 045449          629 RFSENNLIGIGN------------GMEVAVKVFHQQYERALKSFEDECEVRKRIR-HR-----NLVK-------------  677 (823)
Q Consensus       629 ~f~~~~~lg~g~------------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-h~-----niv~-------------  677 (823)
                      +|.+.++||+|.            ++.||||+++... ...++...|+.+|.+++ |.     |+|+             
T Consensus       187 rY~V~e~LGkGtFGQVvk~~d~~T~e~VAIKIiKN~k-~f~~Q~~~Ei~iL~~ln~~d~~~~~n~Vrm~d~F~fr~Hlci  265 (586)
T KOG0667|consen  187 RYEVLEVLGKGSFGQVVKAYDHKTGEIVAIKIIKNKK-RFLRQAQIEIRILELLNKHDPDDKYNIVRMLDYFYFRNHLCI  265 (586)
T ss_pred             EEEEEEEecccccceeEEEEecCCCcEEEEEeeccCh-HHHHHHHHHHHHHHHHhccCCCCCeeEEEeeeccccccceee
Confidence            788889999886            6679999997663 44467788999999986 43     5555             


Q ss_pred             ----------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCC--CCcEEEeecccccccCCCC
Q 045449          678 ----------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDE--DMVAHISDFGIAKLLSGED  727 (823)
Q Consensus       678 ----------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~--~~~~kl~DfGla~~~~~~~  727 (823)
                                                  +..|++.+|.++|+.+|||+||||||||+.+  ...+||+|||.|...... 
T Consensus       266 VfELL~~NLYellK~n~f~Glsl~~ir~~~~Qil~~L~~L~~l~IIHcDLKPENILL~~~~r~~vKVIDFGSSc~~~q~-  344 (586)
T KOG0667|consen  266 VFELLSTNLYELLKNNKFRGLSLPLVRKFAQQILTALLFLHELGIIHCDLKPENILLKDPKRSRIKVIDFGSSCFESQR-  344 (586)
T ss_pred             eehhhhhhHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCeeeccCChhheeeccCCcCceeEEecccccccCCc-
Confidence                                        3568999999999999999999999999964  348999999999875422 


Q ss_pred             ccccccccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCC
Q 045449          728 QLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       728 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                          ....+.+..|+|||++.+.+|+.+.||||||||++||.+|...|.+.
T Consensus       345 ----vytYiQSRfYRAPEVILGlpY~~~IDmWSLGCIlAEL~tG~PLfpG~  391 (586)
T KOG0667|consen  345 ----VYTYIQSRFYRAPEVILGLPYDTAIDMWSLGCILAELFTGEPLFPGD  391 (586)
T ss_pred             ----ceeeeeccccccchhhccCCCCCccceeehhhhHHhHhcCccccCCC
Confidence                12567899999999999999999999999999999999998777664

>PHA03212 serine/threonine kinase US3; Provisional

Probab=99.88  E-value=2.8e-23  Score=230.57  Aligned_cols=142  Identities=23%  Similarity=0.233  Sum_probs=118.7

Q ss_pred             ccCCccceeeccC------------CeEEEEEEehHhhHHHHHHHHHHHHHHhhcchhhHHH------------------
Q 045449          628 DRFSENNLIGIGN------------GMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVK------------------  677 (823)
Q Consensus       628 ~~f~~~~~lg~g~------------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~------------------  677 (823)
                      .+|...+.||.|+            +..||+|...      .+.+.+|++++++++|||||+                  
T Consensus        92 ~~y~~~~~lg~G~~g~V~~~~d~~~~~~vaiK~~~------~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~lv~e~~  165 (391)
T PHA03212         92 AGFSILETFTPGAEGFAFACIDNKTCEHVVIKAGQ------RGGTATEAHILRAINHPSIIQLKGTFTYNKFTCLILPRY  165 (391)
T ss_pred             CCcEEEEEEcCCCCeEEEEEEECCCCCEEEEechh------hhhhHHHHHHHHhCCCCCCCCEeEEEEECCeeEEEEecC
Confidence            4688888888886            4557888643      245789999999999999998                  


Q ss_pred             ---------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccc
Q 045449          678 ---------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTL  736 (823)
Q Consensus       678 ---------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~  736 (823)
                                           ++.|++++|.|+|+.+|+||||||+||+++.++.+||+|||+|+....... ......+
T Consensus       166 ~~~L~~~l~~~~~l~~~~~~~i~~qi~~aL~ylH~~~IvHrDiKP~NIll~~~~~vkL~DFG~a~~~~~~~~-~~~~~~~  244 (391)
T PHA03212        166 KTDLYCYLAAKRNIAICDILAIERSVLRAIQYLHENRIIHRDIKAENIFINHPGDVCLGDFGAACFPVDINA-NKYYGWA  244 (391)
T ss_pred             CCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCChHhEEEcCCCCEEEEeCCcccccccccc-ccccccc
Confidence                                 356889999999999999999999999999999999999999975432211 1223457


Q ss_pred             cCCCcCcccccCCCccccccceehhhhhhccccCCCCCcC
Q 045449          737 ATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVG  776 (823)
Q Consensus       737 gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~  776 (823)
                      ||+.|+|||++.+..++.++||||+||++|++++|..|+.
T Consensus       245 gt~~y~aPE~~~~~~~~~~~DiwSlGvil~elltg~~p~~  284 (391)
T PHA03212        245 GTIATNAPELLARDPYGPAVDIWSAGIVLFEMATCHDSLF  284 (391)
T ss_pred             CccCCCChhhhcCCCCCcHHHHHHHHHHHHHHHHCCCCcC
Confidence            9999999999999899999999999999999999987754

>KOG0589 consensus Serine/threonine protein kinase [General function prediction only]

Probab=99.88  E-value=1.4e-23  Score=223.86  Aligned_cols=148  Identities=24%  Similarity=0.313  Sum_probs=126.7

Q ss_pred             cCCccceeeccC------------CeEEEEEEehHhh--HHHHHHHHHHHHHHhhcchhhHHH-----------------
Q 045449          629 RFSENNLIGIGN------------GMEVAVKVFHQQY--ERALKSFEDECEVRKRIRHRNLVK-----------------  677 (823)
Q Consensus       629 ~f~~~~~lg~g~------------~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~-----------------  677 (823)
                      +|...+.+|+|+            +..||+|.+....  +...+....|+.++++++|||||.                 
T Consensus         5 ~Ye~~~~iG~GafG~a~lvrhk~~~~~~vlK~I~l~~~t~~~r~~A~~E~~lis~~~hP~iv~y~ds~~~~~~~l~Ivm~   84 (426)
T KOG0589|consen    5 NYEVLRQVGRGAFGSALLVRHKSDDKLYVLKKINLEKLTEPERRSAIQEMDLLSKLLHPNIVEYKDSFEEDGQLLCIVME   84 (426)
T ss_pred             hhhhhhhcCccccchhhhhhhccCCceEEEEEEeccccCchhhHHHHHHHHHHHhccCCCeeeeccchhcCCceEEEEEe
Confidence            444555666664            4568999886433  455568899999999999999998                 


Q ss_pred             --------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCcccc
Q 045449          678 --------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSK  731 (823)
Q Consensus       678 --------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~  731 (823)
                                                ++.|++.++.|+|+..|+|||+|+.||+++.+..+||.|||+|+.+..+..  .
T Consensus        85 Y~eGg~l~~~i~~~k~~~f~E~~i~~~~~Q~~~av~ylH~~~iLHRDlK~~Nifltk~~~VkLgDfGlaK~l~~~~~--~  162 (426)
T KOG0589|consen   85 YCEGGDLAQLIKEQKGVLFPEERILKWFVQILLAVNYLHENRVLHRDLKCANIFLTKDKKVKLGDFGLAKILNPEDS--L  162 (426)
T ss_pred             ecCCCCHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhhhhhcccchhhhhhccccCceeecchhhhhhcCCchh--h
Confidence                                      367899999999999999999999999999999999999999999876542  3


Q ss_pred             ccccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCC
Q 045449          732 QTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       732 ~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      ..+.+||+.||+||.+.+.+|+.|+|+||+||++|||.+-+.+|...
T Consensus       163 a~tvvGTp~YmcPEil~d~pYn~KSDiWsLGC~~yEm~~lk~aF~a~  209 (426)
T KOG0589|consen  163 ASTVVGTPYYMCPEILSDIPYNEKSDIWSLGCCLYEMCTLKPAFKAS  209 (426)
T ss_pred             hheecCCCcccCHHHhCCCCCCccCcchhhcchHHHHHhcccccCcc
Confidence            45678999999999999999999999999999999999999988765

>KOG0610 consensus Putative serine/threonine protein kinase [General function prediction only]

Probab=99.87  E-value=5.3e-23  Score=211.69  Aligned_cols=150  Identities=24%  Similarity=0.275  Sum_probs=123.0

Q ss_pred             CCccceeeccC------------CeEEEEEEehHhh---HHHHHHHHHHHHHHhhcchhhHHH-----------------
Q 045449          630 FSENNLIGIGN------------GMEVAVKVFHQQY---ERALKSFEDECEVRKRIRHRNLVK-----------------  677 (823)
Q Consensus       630 f~~~~~lg~g~------------~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~-----------------  677 (823)
                      |..-+.+|.|+            +...|+|++.+..   .+...+...|-+||+.++||.++.                 
T Consensus        79 f~llk~LG~GdiG~VyL~~l~~t~~~fAmKVmdK~~l~~rkKl~Ra~tE~eIL~~lDHPFlPTLYa~fet~~~~cl~mey  158 (459)
T KOG0610|consen   79 FRLLKRLGCGDIGTVYLVELRGTNCLFAMKVMDKESLASRKKLKRAQTEREILSLLDHPFLPTLYASFETDKYSCLVMEY  158 (459)
T ss_pred             HHHHHHcCCCCceeEEEEEecCCCceEEEEEecHHHHhhhhHHHHHHHHHHHHHhcCCCccchhhheeeccceeEEEEec
Confidence            33445667664            4668999998765   344467888999999999999998                 


Q ss_pred             -------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCC-------
Q 045449          678 -------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSG-------  725 (823)
Q Consensus       678 -------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~-------  725 (823)
                                               ++|+++.||+|+|..|||.||+||+|||+.++|++.|+||-++.....       
T Consensus       159 CpGGdL~~LrqkQp~~~fse~~aRFYaAEvl~ALEYLHmlGivYRDLKPENILvredGHIMLsDFDLS~~~~~~Pt~~~s  238 (459)
T KOG0610|consen  159 CPGGDLHSLRQKQPGKRFSESAARFYAAEVLLALEYLHMLGIVYRDLKPENILVREDGHIMLSDFDLSLRCPVSPTLVKS  238 (459)
T ss_pred             CCCccHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHhhceeeccCCcceeEEecCCcEEeeeccccccCCCCCeeecc
Confidence                                     478999999999999999999999999999999999999998754211       


Q ss_pred             --------------------------CCc---------------------cccccccccCCCcCcccccCCCccccccce
Q 045449          726 --------------------------EDQ---------------------LSKQTQTLATIGYMAPEYGTKGRVSTRGDV  758 (823)
Q Consensus       726 --------------------------~~~---------------------~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv  758 (823)
                                                ...                     ......++||..|.|||++.+...+.++|+
T Consensus       239 ~~~~~~~~~~~~~~~~~s~f~~r~~~~~~~~~k~~~~~~~~~p~~~aep~~~RSnSFVGThEYlAPEvI~G~GHgsAVDW  318 (459)
T KOG0610|consen  239 SSPRSSGSQPSCRSRQPSCFSPRCLSSSKKRKKKDESASRSLPELVAEPTGARSNSFVGTHEYLAPEVIRGEGHGSAVDW  318 (459)
T ss_pred             CCCCCCCCCcccccccccccccchhccccccccccccccccchhhhcCCCCccccccccccccccceeeecCCCCchhhH
Confidence                                      000                     011224689999999999999999999999


Q ss_pred             ehhhhhhccccCCCCCcCCCc
Q 045449          759 CSFGIISGGKETRSMTVGETC  779 (823)
Q Consensus       759 ~S~Gvv~~~~~~~~~~~~~~~  779 (823)
                      |+|||++|||++|..||.+..
T Consensus       319 WtfGIflYEmLyG~TPFKG~~  339 (459)
T KOG0610|consen  319 WTFGIFLYEMLYGTTPFKGSN  339 (459)
T ss_pred             HHHHHHHHHHHhCCCCcCCCC
Confidence            999999999999999997753

>cd07859 STKc_TDY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants

Probab=99.87  E-value=4.1e-23  Score=225.86  Aligned_cols=148  Identities=26%  Similarity=0.374  Sum_probs=119.9

Q ss_pred             CCccceeeccC------------CeEEEEEEehHhh--HHHHHHHHHHHHHHhhcchhhHHH------------------
Q 045449          630 FSENNLIGIGN------------GMEVAVKVFHQQY--ERALKSFEDECEVRKRIRHRNLVK------------------  677 (823)
Q Consensus       630 f~~~~~lg~g~------------~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~------------------  677 (823)
                      |...+.||.|+            +..||||++....  .....++.+|++++++++||||++                  
T Consensus         2 y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~~l   81 (338)
T cd07859           2 YKIQEVIGKGSYGVVCSAIDTHTGEKVAIKKINDVFEHVSDATRILREIKLLRLLRHPDIVEIKHIMLPPSRREFKDIYV   81 (338)
T ss_pred             eEEEEEEeecCCeEEEEEEECCCCCEEEEEEechhhccchhHHHHHHHHHHHHhCCCCCEeeecceEeccCCCCCceEEE
Confidence            55556666664            5779999987432  233457889999999999999986                  


Q ss_pred             --------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCcc-c
Q 045449          678 --------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQL-S  730 (823)
Q Consensus       678 --------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~-~  730 (823)
                                                ++.|++++|+|+|+.+|+||||||+|||++.++.+||+|||+++........ .
T Consensus        82 v~e~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~dlkp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~  161 (338)
T cd07859          82 VFELMESDLHQVIKANDDLTPEHHQFFLYQLLRALKYIHTANVFHRDLKPKNILANADCKLKICDFGLARVAFNDTPTAI  161 (338)
T ss_pred             EEecCCCCHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeEECCCCcEEEccCccccccccccCccc
Confidence                                      3568899999999999999999999999999999999999999865322211 1


Q ss_pred             cccccccCCCcCcccccCC--CccccccceehhhhhhccccCCCCCcCC
Q 045449          731 KQTQTLATIGYMAPEYGTK--GRVSTRGDVCSFGIISGGKETRSMTVGE  777 (823)
Q Consensus       731 ~~~~~~gt~~y~aPE~~~~--~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~  777 (823)
                      ......||+.|+|||++.+  ..++.++|||||||++|++.+|+.||.+
T Consensus       162 ~~~~~~~t~~y~aPE~~~~~~~~~~~~~DvwSlGvvl~el~tg~~pf~~  210 (338)
T cd07859         162 FWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEVLTGKPLFPG  210 (338)
T ss_pred             cccCCCCCCCcCCHHHHhccccccCchhHHHHHHHHHHHHHcCCCCCCC
Confidence            1234579999999999865  6789999999999999999999999865

Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phos

>KOG0032 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=99.87  E-value=2.1e-23  Score=226.19  Aligned_cols=149  Identities=28%  Similarity=0.382  Sum_probs=125.8

Q ss_pred             ccCCccceeeccC------------CeEEEEEEehHhhH---HHHHHHHHHHHHHhhcc-hhhHHH--------------
Q 045449          628 DRFSENNLIGIGN------------GMEVAVKVFHQQYE---RALKSFEDECEVRKRIR-HRNLVK--------------  677 (823)
Q Consensus       628 ~~f~~~~~lg~g~------------~~~vavK~~~~~~~---~~~~~~~~E~~~l~~l~-h~niv~--------------  677 (823)
                      +.|...+.+|+|.            |..+|+|++.+...   ...+.+.+|+++|+++. |||||.              
T Consensus        35 ~~Y~l~~~lG~G~Fg~v~~~~~~~tg~~~A~K~i~k~~~~~~~~~~~v~~Ev~il~~l~~hpniv~l~~~~e~~~~~~lv  114 (382)
T KOG0032|consen   35 EKYELGRELGRGQFGVVYLCREKSTGKEVACKVIPKRKLRGKEDREDVRREVAILQQLSGHPNIVQLKDAFEDPDSVYLV  114 (382)
T ss_pred             ccEEehhhhCCCCceEEEEEEecCCCceeEEEEeehhhccccccHHHHHHHHHHHHhccCCCCEEEEEEEEEcCCeEEEE
Confidence            4455556777774            67799999976653   24468999999999998 999998              


Q ss_pred             -------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCC----CCcEEEeecccccccCCCCc
Q 045449          678 -------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDE----DMVAHISDFGIAKLLSGEDQ  728 (823)
Q Consensus       678 -------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~----~~~~kl~DfGla~~~~~~~~  728 (823)
                                               ++.|++++++|+|+.||+|||+||+|+|+..    ++.+|++|||+|+.....  
T Consensus       115 mEL~~GGeLfd~i~~~~~sE~da~~~~~~il~av~~lH~~gvvHrDlKpEN~L~~~~~~~~~~ik~~DFGla~~~~~~--  192 (382)
T KOG0032|consen  115 MELCEGGELFDRIVKKHYSERDAAGIIRQILEAVKYLHSLGVVHRDLKPENLLLASKDEGSGRIKLIDFGLAKFIKPG--  192 (382)
T ss_pred             EEecCCchHHHHHHHccCCHHHHHHHHHHHHHHHHHHHhCCceeccCCHHHeeeccccCCCCcEEEeeCCCceEccCC--
Confidence                                     2568899999999999999999999999963    258999999999987652  


Q ss_pred             cccccccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCCc
Q 045449          729 LSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGETC  779 (823)
Q Consensus       729 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~~  779 (823)
                       ......+||+.|+|||++....|+..+||||.||++|.++.|..||.+..
T Consensus       193 -~~~~~~~Gtp~y~APEvl~~~~y~~~~DiWS~Gvi~yiLL~G~~PF~~~~  242 (382)
T KOG0032|consen  193 -ERLHTIVGTPEYVAPEVLGGRPYGDEVDVWSIGVILYILLSGVPPFWGET  242 (382)
T ss_pred             -ceEeeecCCccccCchhhcCCCCCcccchhHHHHHHHHHhhCCCCCcCCC
Confidence             23456799999999999999999999999999999999999999997643

>KOG2052 consensus Activin A type IB receptor, serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.87  E-value=1.6e-22  Score=209.51  Aligned_cols=182  Identities=27%  Similarity=0.396  Sum_probs=127.6

Q ss_pred             ccCCccceeeccC----------CeEEEEEEehHhhHHHHHHHHHHHHHHhhc--chhhHHHHH----------------
Q 045449          628 DRFSENNLIGIGN----------GMEVAVKVFHQQYERALKSFEDECEVRKRI--RHRNLVKII----------------  679 (823)
Q Consensus       628 ~~f~~~~~lg~g~----------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l--~h~niv~~~----------------  679 (823)
                      +.....+.||+|.          |..||||+|....+   +.+.+|.++...+  +|+||..++                
T Consensus       211 rqI~L~e~IGkGRyGEVwrG~wrGe~VAVKiF~srdE---~SWfrEtEIYqTvmLRHENILgFIaaD~~~~gs~TQLwLv  287 (513)
T KOG2052|consen  211 RQIVLQEIIGKGRFGEVWRGRWRGEDVAVKIFSSRDE---RSWFRETEIYQTVMLRHENILGFIAADNKDNGSWTQLWLV  287 (513)
T ss_pred             heeEEEEEecCccccceeeccccCCceEEEEecccch---hhhhhHHHHHHHHHhccchhhhhhhccccCCCceEEEEEe
Confidence            3445557788875          67799999975544   5788999998864  999999942                


Q ss_pred             ---------------------------HHHHHHhhhcC--------CCCEEeccCCCCCEEeCCCCcEEEeecccccccC
Q 045449          680 ---------------------------SSSLEYLHFGH--------SIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLS  724 (823)
Q Consensus       680 ---------------------------~~~l~~L~~~h--------~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~  724 (823)
                                                 ..++.+|.|+|        ++.|.|||||+.|||+..++...|+|+|+|-...
T Consensus       288 TdYHe~GSL~DyL~r~tv~~~~ml~LalS~AsGLaHLH~eI~GTqgKPaIAHRDlKSKNILVKkn~~C~IADLGLAv~h~  367 (513)
T KOG2052|consen  288 TDYHEHGSLYDYLNRNTVTTEGMLKLALSIASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHD  367 (513)
T ss_pred             eecccCCcHHHHHhhccCCHHHHHHHHHHHhhhHHHHHHHHhcCCCCchhhccccccccEEEccCCcEEEeeceeeEEec
Confidence                                       23344555555        4789999999999999999999999999997654


Q ss_pred             CCCc--cccccccccCCCcCcccccCCCc----c--ccccceehhhhhhccccCCCCCcCCCcccccccccccCCccccc
Q 045449          725 GEDQ--LSKQTQTLATIGYMAPEYGTKGR----V--STRGDVCSFGIISGGKETRSMTVGETCTPVRESKYEVHPATTTI  796 (823)
Q Consensus       725 ~~~~--~~~~~~~~gt~~y~aPE~~~~~~----~--~~~~Dv~S~Gvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  796 (823)
                      ....  .......+||.+|||||++....    +  -..+||||||.|+||+.-+-. .+++.+..+...|+..|.    
T Consensus       368 ~~t~~idi~~N~rVGTKRYMAPEvLdetin~~~Fesyk~ADIYafgLVlWEiarRc~-~ggi~eey~~Pyyd~Vp~----  442 (513)
T KOG2052|consen  368 SDTDTIDIPPNPRVGTKRYMAPEVLDETINMKHFESYKRADIYAFGLVLWEIARRCE-SGGIVEEYQLPYYDVVPS----  442 (513)
T ss_pred             ccCCcccCCCCCccceeeccChHHhhhhcChhhhhhhhHHHHHHHHHHHHHHHHHhh-cCCEehhhcCCcccCCCC----
Confidence            4321  22345678999999999986542    1  235899999999999865443 234444444444444443    


Q ss_pred             ccCCCccccccccccccccccc
Q 045449          797 MEHPLPRVGEVMDVDRGKARIQ  818 (823)
Q Consensus       797 ~~~~~~~~~~~~~~~~~~~~~~  818 (823)
                       +.....|++++++++.+..++
T Consensus       443 -DPs~eeMrkVVCv~~~RP~ip  463 (513)
T KOG2052|consen  443 -DPSFEEMRKVVCVQKLRPNIP  463 (513)
T ss_pred             -CCCHHHHhcceeecccCCCCC
Confidence             333456667777766665443

>cd05594 STKc_PKB_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha

Probab=99.87  E-value=1.3e-22  Score=220.43  Aligned_cols=137  Identities=22%  Similarity=0.240  Sum_probs=115.4

Q ss_pred             CCeEEEEEEehHhh---HHHHHHHHHHHHHHhhcchhhHHH---------------------------------------
Q 045449          640 NGMEVAVKVFHQQY---ERALKSFEDECEVRKRIRHRNLVK---------------------------------------  677 (823)
Q Consensus       640 ~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~---------------------------------------  677 (823)
                      .+..||+|++....   ......+..|++++.+++||||++                                       
T Consensus        19 ~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~~~hp~i~~~~~~~~~~~~~~lv~E~~~~~~L~~~l~~~~~l~~~~~~   98 (325)
T cd05594          19 TGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTALKYSFQTHDRLCFVMEYANGGELFFHLSRERVFSEDRAR   98 (325)
T ss_pred             CCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCCceEEEEEcCCEEEEEEeCCCCCcHHHHHHhcCCCCHHHHH
Confidence            36789999997643   234467889999999999999998                                       


Q ss_pred             -HHHHHHHHhhhcCC-CCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccCCCccccc
Q 045449          678 -IISSSLEYLHFGHS-IPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTR  755 (823)
Q Consensus       678 -~~~~~l~~L~~~h~-~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~  755 (823)
                       ++.|++.+|+|+|+ .+|+||||||+|||++.++.+||+|||+++.......  ......||+.|+|||++.+..++.+
T Consensus        99 ~~~~qi~~aL~~lH~~~~ivHrDikp~NIll~~~~~~kL~Dfg~~~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~  176 (325)
T cd05594          99 FYGAEIVSALDYLHSEKNVVYRDLKLENLMLDKDGHIKITDFGLCKEGIKDGA--TMKTFCGTPEYLAPEVLEDNDYGRA  176 (325)
T ss_pred             HHHHHHHHHHHHHHhcCCEEecCCCCCeEEECCCCCEEEecCCCCeecCCCCc--ccccccCCcccCCHHHHccCCCCCc
Confidence             35688999999997 7999999999999999999999999999875432221  1234579999999999998899999


Q ss_pred             cceehhhhhhccccCCCCCcCCC
Q 045449          756 GDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       756 ~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      +||||+||++|++++|..||...
T Consensus       177 ~DiwslG~il~el~tG~~Pf~~~  199 (325)
T cd05594         177 VDWWGLGVVMYEMMCGRLPFYNQ  199 (325)
T ss_pred             cccccccceeeeeccCCCCCCCC
Confidence            99999999999999999998653

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficien

>KOG0596 consensus Dual specificity; serine/threonine and tyrosine kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.87  E-value=1.3e-23  Score=222.49  Aligned_cols=152  Identities=24%  Similarity=0.325  Sum_probs=122.5

Q ss_pred             cCCccceeeccC-----------CeEEEEEEehHh--hHHHHHHHHHHHHHHhhc-chhhHHH-----------------
Q 045449          629 RFSENNLIGIGN-----------GMEVAVKVFHQQ--YERALKSFEDECEVRKRI-RHRNLVK-----------------  677 (823)
Q Consensus       629 ~f~~~~~lg~g~-----------~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l-~h~niv~-----------------  677 (823)
                      .|+..+.||.||           ...||+|++...  ..+....|..|++.|.++ .|.+||+                 
T Consensus       362 ~Yeilk~iG~GGSSkV~kV~~s~~~iyalkkv~~~~~D~qtl~gy~nEI~lL~KLkg~~~IIqL~DYEv~d~~lYmvmE~  441 (677)
T KOG0596|consen  362 EYEILKQIGSGGSSKVFKVLNSDKQIYALKKVVLLEADNQTLDGYRNEIALLNKLKGHDKIIQLYDYEVTDGYLYMVMEC  441 (677)
T ss_pred             hhhHHHhhcCCCcceeeeeecCCCcchhhhHHHHhhcCHHHHHHHHHHHHHHHHhcCCceEEEEeeeeccCceEEEEeec
Confidence            345556777776           244666655432  356678999999999999 5888887                 


Q ss_pred             -----------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccc
Q 045449          678 -----------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQ  734 (823)
Q Consensus       678 -----------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~  734 (823)
                                             +-.|+|.++++.|..||||.|+||.|.|+- +|.+||+|||+|..+..+........
T Consensus       442 Gd~DL~kiL~k~~~~~~~~~lk~ywkqML~aV~~IH~~gIVHSDLKPANFLlV-kG~LKLIDFGIA~aI~~DTTsI~kds  520 (677)
T KOG0596|consen  442 GDIDLNKILKKKKSIDPDWFLKFYWKQMLLAVKTIHQHGIVHSDLKPANFLLV-KGRLKLIDFGIANAIQPDTTSIVKDS  520 (677)
T ss_pred             ccccHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHhceeecCCCcccEEEE-eeeEEeeeechhcccCccccceeecc
Confidence                                   236899999999999999999999999985 57899999999998876655555566


Q ss_pred             cccCCCcCcccccCCCc-----------cccccceehhhhhhccccCCCCCcCCCccc
Q 045449          735 TLATIGYMAPEYGTKGR-----------VSTRGDVCSFGIISGGKETRSMTVGETCTP  781 (823)
Q Consensus       735 ~~gt~~y~aPE~~~~~~-----------~~~~~Dv~S~Gvv~~~~~~~~~~~~~~~~~  781 (823)
                      .+||+.||+||.+....           .++++||||+|||+|+|.+|+.||++....
T Consensus       521 QvGT~NYMsPEAl~~~~s~~~~~~~k~Ki~r~SDvWSLGCILYqMvYgktPf~~~~n~  578 (677)
T KOG0596|consen  521 QVGTVNYMSPEALTDMSSSRENGKSKIKISRKSDVWSLGCILYQMVYGKTPFGQIINQ  578 (677)
T ss_pred             ccCcccccCHHHHhhccccccCCCcceeecCccchhhhhhHHHHHHhcCCchHHHHHH
Confidence            79999999999875432           568999999999999999999999987533

>KOG0983 consensus Mitogen-activated protein kinase (MAPK) kinase MKK7/JNKK2 [Signal transduction mechanisms]

Probab=99.87  E-value=9.9e-23  Score=198.12  Aligned_cols=135  Identities=27%  Similarity=0.330  Sum_probs=104.6

Q ss_pred             CeEEEEEEehHhh-HHHHHHHHHHHHHHhhcc-hhhHHH----------------------------------------H
Q 045449          641 GMEVAVKVFHQQY-ERALKSFEDECEVRKRIR-HRNLVK----------------------------------------I  678 (823)
Q Consensus       641 ~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~-h~niv~----------------------------------------~  678 (823)
                      |...|||.+.+.. ....+++...++++.+-+ .|.||+                                        +
T Consensus       117 ~~iiAVK~M~rt~Nkee~kRILmDldvv~~s~dcpyIV~c~GyFi~n~dV~IcMelMs~C~ekLlkrik~piPE~ilGk~  196 (391)
T KOG0983|consen  117 GHIIAVKQMRRTGNKEENKRILMDLDVVLKSHDCPYIVQCFGYFITNTDVFICMELMSTCAEKLLKRIKGPIPERILGKM  196 (391)
T ss_pred             ceEEEEEeecccCCHHHHHHHHHhhhHHhhccCCCeeeeeeeEEeeCchHHHHHHHHHHHHHHHHHHhcCCchHHhhhhh
Confidence            5778999887554 334466777777766654 688887                                        1


Q ss_pred             HHHHHHHhhhcC-CCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccCC---Ccccc
Q 045449          679 ISSSLEYLHFGH-SIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTK---GRVST  754 (823)
Q Consensus       679 ~~~~l~~L~~~h-~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~---~~~~~  754 (823)
                      ...++.+|+|+. +++|+|||+||+|||+|+.|.+|+||||++..+.....   .+..+|-+.|||||.+.-   ..|+.
T Consensus       197 tva~v~AL~YLKeKH~viHRDvKPSNILlDe~GniKlCDFGIsGrlvdSkA---htrsAGC~~YMaPERidp~~~~kYDi  273 (391)
T KOG0983|consen  197 TVAIVKALYYLKEKHGVIHRDVKPSNILLDERGNIKLCDFGISGRLVDSKA---HTRSAGCAAYMAPERIDPPDKPKYDI  273 (391)
T ss_pred             HHHHHHHHHHHHHhcceeecccCccceEEccCCCEEeecccccceeecccc---cccccCCccccCccccCCCCCCccch
Confidence            123444555553 35899999999999999999999999999988765433   344578899999998753   46999


Q ss_pred             ccceehhhhhhccccCCCCCcCCC
Q 045449          755 RGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       755 ~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      ++|||||||.++|+.||..||...
T Consensus       274 RaDVWSlGITlveLaTg~yPy~~c  297 (391)
T KOG0983|consen  274 RADVWSLGITLVELATGQYPYKGC  297 (391)
T ss_pred             hhhhhhhccchhhhhcccCCCCCC
Confidence            999999999999999999999873

>cd05624 STKc_MRCK_beta Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase beta

Probab=99.87  E-value=8e-23  Score=222.64  Aligned_cols=150  Identities=22%  Similarity=0.289  Sum_probs=122.3

Q ss_pred             ccCCccceeeccC------------CeEEEEEEehHhh---HHHHHHHHHHHHHHhhcchhhHHH---------------
Q 045449          628 DRFSENNLIGIGN------------GMEVAVKVFHQQY---ERALKSFEDECEVRKRIRHRNLVK---------------  677 (823)
Q Consensus       628 ~~f~~~~~lg~g~------------~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~---------------  677 (823)
                      ++|...+.||+|+            +..||||++....   ....+.+.+|+.++..++|++|++               
T Consensus         1 d~y~i~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~l~~~~~~~~~~~lv~   80 (331)
T cd05624           1 DDFEIIKVIGRGAFGEVAVVKMKHTERIYAMKILNKWEMLKRAETACFREERNVLVNGDCQWITTLHYAFQDENYLYLVM   80 (331)
T ss_pred             CCceEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHHHhhHHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCEEEEEE
Confidence            3566677788775            4569999986532   233456889999999999999987               


Q ss_pred             --------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCcccc
Q 045449          678 --------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSK  731 (823)
Q Consensus       678 --------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~  731 (823)
                                                +++|++.+|+|+|+.+|+||||||+||+++.++.+||+|||+++........ .
T Consensus        81 Ey~~gg~L~~~l~~~~~~l~~~~~~~~~~qi~~~L~~lH~~~iiHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~~~~-~  159 (331)
T cd05624          81 DYYVGGDLLTLLSKFEDRLPEDMARFYIAEMVLAIHSIHQLHYVHRDIKPDNVLLDMNGHIRLADFGSCLKMNQDGTV-Q  159 (331)
T ss_pred             eCCCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeeeccCchHHEEEcCCCCEEEEeccceeeccCCCce-e
Confidence                                      3578999999999999999999999999999999999999999876443221 1


Q ss_pred             ccccccCCCcCcccccCC-----CccccccceehhhhhhccccCCCCCcCCC
Q 045449          732 QTQTLATIGYMAPEYGTK-----GRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       732 ~~~~~gt~~y~aPE~~~~-----~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      .....||+.|+|||++.+     +.++.++||||+||++|++++|..||...
T Consensus       160 ~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~  211 (331)
T cd05624         160 SSVAVGTPDYISPEILQAMEDGMGKYGPECDWWSLGVCMYEMLYGETPFYAE  211 (331)
T ss_pred             eccccCCcccCCHHHHhccccCCCCCCCcccEEeeehhhhhhhhCCCCccCC
Confidence            233569999999998865     46789999999999999999999999654

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) beta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKbeta is expressed ubiquitously in many tissues.

>cd05597 STKc_DMPK_like Catalytic domain of Myotonic Dystrophy protein kinase-like Protein Serine/Threonine Kinases

Probab=99.87  E-value=9.5e-23  Score=222.04  Aligned_cols=149  Identities=23%  Similarity=0.312  Sum_probs=121.5

Q ss_pred             cCCccceeeccC------------CeEEEEEEehHhh---HHHHHHHHHHHHHHhhcchhhHHH----------------
Q 045449          629 RFSENNLIGIGN------------GMEVAVKVFHQQY---ERALKSFEDECEVRKRIRHRNLVK----------------  677 (823)
Q Consensus       629 ~f~~~~~lg~g~------------~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~----------------  677 (823)
                      +|...+.||.|+            +..||||++....   ....+.|.+|+.++.+++|+||++                
T Consensus         2 ~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e   81 (331)
T cd05597           2 DFEILKVIGRGAFGEVAVVKMKNTGQVYAMKILNKWEMLKRAETACFREERDVLVNGDRRWITNLHYAFQDENNLYLVMD   81 (331)
T ss_pred             CceEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCCCceEEEEecCCeEEEEEe
Confidence            566677788775            5679999997532   234467889999999999999987                


Q ss_pred             -------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccc
Q 045449          678 -------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQ  732 (823)
Q Consensus       678 -------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~  732 (823)
                                               ++.|++.+|+|+|+.+|+||||||+|||++.++.+||+|||+++........ ..
T Consensus        82 ~~~g~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~~-~~  160 (331)
T cd05597          82 YYVGGDLLTLLSKFEDRLPEDMARFYLAEMVLAIDSVHQLGYVHRDIKPDNVLLDKNGHIRLADFGSCLRLLADGTV-QS  160 (331)
T ss_pred             cCCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeEECCCCHHHEEECCCCCEEEEECCceeecCCCCCc-cc
Confidence                                     3578899999999999999999999999999999999999999765433221 12


Q ss_pred             cccccCCCcCcccccCC-----CccccccceehhhhhhccccCCCCCcCCC
Q 045449          733 TQTLATIGYMAPEYGTK-----GRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       733 ~~~~gt~~y~aPE~~~~-----~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      ....||+.|+|||++..     ..++.++||||+||++|++++|..||...
T Consensus       161 ~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~~l~el~~g~~Pf~~~  211 (331)
T cd05597         161 NVAVGTPDYISPEILQAMEDGKGRYGPECDWWSLGVCMYEMLYGETPFYAE  211 (331)
T ss_pred             cceeccccccCHHHHhhccccccCCCCcceeehhhhHHHHHhhCCCCCCCC
Confidence            23469999999999863     45788999999999999999999998653

Serine/Threonine Kinases (STKs), Myotonic Dystrophy protein kinase (DMPK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The DMPK-like subfamily is composed of DMPK and DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK). Three isoforms of MRCK are known, named alpha, beta and gamma. The DMPK gene is implicated in myotonic dystrophy 1 (DM1), an inherited multisystemic disorder with symptoms that include muscle hyperexcitability, progressive muscle weakness and wasting, cataract development, testicular atrophy,

>cd07874 STKc_JNK3 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3

Probab=99.87  E-value=9e-23  Score=224.66  Aligned_cols=151  Identities=27%  Similarity=0.332  Sum_probs=127.0

Q ss_pred             HHhccCCccceeeccC------------CeEEEEEEehHhh--HHHHHHHHHHHHHHhhcchhhHHH-------------
Q 045449          625 RATDRFSENNLIGIGN------------GMEVAVKVFHQQY--ERALKSFEDECEVRKRIRHRNLVK-------------  677 (823)
Q Consensus       625 ~at~~f~~~~~lg~g~------------~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~-------------  677 (823)
                      ...++|...+.||.|+            +..||||++....  ....+.+.+|+.+++.++||||++             
T Consensus        14 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~   93 (355)
T cd07874          14 TVLKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKSLEE   93 (355)
T ss_pred             hhhhceeEEEEeeecCCEEEEEEEecCCCceEEEEEeCCcccChHHHHHHHHHHHHHHHhCCCchhceeeeeeccccccc
Confidence            3457888888899885            5668999986432  334467889999999999999987             


Q ss_pred             ------------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCC
Q 045449          678 ------------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGED  727 (823)
Q Consensus       678 ------------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~  727 (823)
                                                    ++.|++++|+|+|+.||+||||||+||+++.++.+||+|||+++......
T Consensus        94 ~~~~~lv~e~~~~~l~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~givHrDikp~Nill~~~~~~kl~Dfg~~~~~~~~~  173 (355)
T cd07874          94 FQDVYLVMELMDANLCQVIQMELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSF  173 (355)
T ss_pred             cceeEEEhhhhcccHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhCCcccCCCChHHEEECCCCCEEEeeCcccccCCCcc
Confidence                                          24688999999999999999999999999999999999999998653321


Q ss_pred             ccccccccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCC
Q 045449          728 QLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       728 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                         ......||+.|+|||++.+..++.++|||||||++|++++|..||.+.
T Consensus       174 ---~~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~  221 (355)
T cd07874         174 ---MMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGR  221 (355)
T ss_pred             ---ccCCccccCCccCHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Confidence               223457899999999999889999999999999999999999998653

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, strok

>cd07848 STKc_CDKL5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5

Probab=99.87  E-value=7.3e-23  Score=218.39  Aligned_cols=149  Identities=26%  Similarity=0.369  Sum_probs=123.2

Q ss_pred             cCCccceeeccC------------CeEEEEEEehHhh--HHHHHHHHHHHHHHhhcchhhHHH-----------------
Q 045449          629 RFSENNLIGIGN------------GMEVAVKVFHQQY--ERALKSFEDECEVRKRIRHRNLVK-----------------  677 (823)
Q Consensus       629 ~f~~~~~lg~g~------------~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~-----------------  677 (823)
                      +|...+.+|.|+            +..||||++....  ....+.+.+|++++++++||||++                 
T Consensus         2 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~   81 (287)
T cd07848           2 KFEVLGVVGEGAYGVVLKCRHKETKEIVAIKKFKDSEENEEVKETTLRELKMLRTLKQENIVELKEAFRRRGKLYLVFEY   81 (287)
T ss_pred             CceEEEEecccCCEEEEEEEECCCCcEEEEEEEecccccccchhhHHHHHHHHHhCCCccccchhhhEecCCEEEEEEec
Confidence            455666677664            5679999986432  334567889999999999999998                 


Q ss_pred             -----------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccc
Q 045449          678 -----------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQ  734 (823)
Q Consensus       678 -----------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~  734 (823)
                                             ++.|++.+|+|+|+.+|+||||||+||+++.++.+||+|||+++....... .....
T Consensus        82 ~~~~~l~~~~~~~~~~~~~~~~~~~~qi~~~L~~lH~~~i~H~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~-~~~~~  160 (287)
T cd07848          82 VEKNMLELLEEMPNGVPPEKVRSYIYQLIKAIHWCHKNDIVHRDIKPENLLISHNDVLKLCDFGFARNLSEGSN-ANYTE  160 (287)
T ss_pred             CCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEEcCCCcEEEeeccCccccccccc-ccccc
Confidence                                   356889999999999999999999999999999999999999987643222 12234


Q ss_pred             cccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCC
Q 045449          735 TLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       735 ~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      ..||+.|+|||++.+..++.++||||+||++|++.+|+.||...
T Consensus       161 ~~~~~~y~aPE~~~~~~~~~~~DiwslGvil~el~~g~~pf~~~  204 (287)
T cd07848         161 YVATRWYRSPELLLGAPYGKAVDMWSVGCILGELSDGQPLFPGE  204 (287)
T ss_pred             cccccccCCcHHHcCCCCCCchhHHhHHHHHHHHHhCCCCCCCC
Confidence            57899999999998888999999999999999999999998653

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 5 (CDKL5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Mutations in the gene encoding CDKL5, previously called STK9, are associated with early onset epilepsy and severe mental retardation [X-linked infantile spasm syndrome (ISSX) or West syndrome]. In addition, CDKL5 mutations also sometimes

>cd07869 STKc_PFTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase

Probab=99.87  E-value=4.3e-23  Score=222.03  Aligned_cols=150  Identities=26%  Similarity=0.301  Sum_probs=123.0

Q ss_pred             hccCCccceeeccC------------CeEEEEEEehHhhH-HHHHHHHHHHHHHhhcchhhHHH----------------
Q 045449          627 TDRFSENNLIGIGN------------GMEVAVKVFHQQYE-RALKSFEDECEVRKRIRHRNLVK----------------  677 (823)
Q Consensus       627 t~~f~~~~~lg~g~------------~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~----------------  677 (823)
                      .++|...+.||.|+            +..||||++..... .....+.+|++++++++||||++                
T Consensus         4 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e   83 (303)
T cd07869           4 ADSYEKLEKLGEGSYATVYKGKSKVNGKLVALKVIRLQEEEGTPFTAIREASLLKGLKHANIVLLHDIIHTKETLTLVFE   83 (303)
T ss_pred             cccceEeeeEEecCCEEEEEEEECCCCCEEEEEEeccccccccchhHHHHHHHHhhCCCCCcCeEEEEEecCCeEEEEEE
Confidence            46777778888875            56799999864432 22346788999999999999998                


Q ss_pred             ------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCcccccc
Q 045449          678 ------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQT  733 (823)
Q Consensus       678 ------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~  733 (823)
                                              ++.|++.+|+|+|+.+|+||||||+||+++.++.+||+|||+++......  ....
T Consensus        84 ~~~~~l~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~--~~~~  161 (303)
T cd07869          84 YVHTDLCQYMDKHPGGLHPENVKLFLFQLLRGLSYIHQRYILHRDLKPQNLLISDTGELKLADFGLARAKSVPS--HTYS  161 (303)
T ss_pred             CCCcCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEECCCCCEEECCCCcceeccCCC--ccCC
Confidence                                    35688999999999999999999999999999999999999997643221  1223


Q ss_pred             ccccCCCcCcccccCC-CccccccceehhhhhhccccCCCCCcCCC
Q 045449          734 QTLATIGYMAPEYGTK-GRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       734 ~~~gt~~y~aPE~~~~-~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      ...||+.|+|||++.+ ..++.++||||+||+++++.+|..||.+.
T Consensus       162 ~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~  207 (303)
T cd07869         162 NEVVTLWYRPPDVLLGSTEYSTCLDMWGVGCIFVEMIQGVAAFPGM  207 (303)
T ss_pred             CCcccCCCCChHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence            4568999999998765 45889999999999999999999999764

Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D3 an

>cd05614 STKc_MSK2_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2

Probab=99.87  E-value=8.6e-23  Score=222.66  Aligned_cols=136  Identities=25%  Similarity=0.279  Sum_probs=112.3

Q ss_pred             CeEEEEEEehHhh----HHHHHHHHHHHHHHhhc-chhhHHH--------------------------------------
Q 045449          641 GMEVAVKVFHQQY----ERALKSFEDECEVRKRI-RHRNLVK--------------------------------------  677 (823)
Q Consensus       641 ~~~vavK~~~~~~----~~~~~~~~~E~~~l~~l-~h~niv~--------------------------------------  677 (823)
                      +..||+|++....    ....+.+..|++++.++ +|++|++                                      
T Consensus        28 ~~~~aiK~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~  107 (332)
T cd05614          28 GKLYAMKVLQKAALVQKAKTVEHTRTERNVLEHVRQSPFLVTLHYAFQTEAKLHLILDYVSGGEMFTHLYQRDNFSEDEV  107 (332)
T ss_pred             CCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHHhccCCCCcccEEEEEecCCEEEEEEeCCCCCcHHHHHHHcCCCCHHHH
Confidence            4668999986532    23346788999999999 5899997                                      


Q ss_pred             --HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccCCC-cccc
Q 045449          678 --IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKG-RVST  754 (823)
Q Consensus       678 --~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~  754 (823)
                        ++.|++.+|+|+|+.+|+||||||+|||++.++.+||+|||+++....... .......||+.|+|||++.+. .++.
T Consensus       108 ~~~~~qi~~~l~~lH~~~ivHrDlkp~Nili~~~~~~kl~DfG~~~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~  186 (332)
T cd05614         108 RFYSGEIILALEHLHKLGIVYRDIKLENILLDSEGHVVLTDFGLSKEFLSEEK-ERTYSFCGTIEYMAPEIIRGKGGHGK  186 (332)
T ss_pred             HHHHHHHHHHHHHHHHCCcEecCCCHHHeEECCCCCEEEeeCcCCccccccCC-CccccccCCccccCHHHhcCCCCCCC
Confidence              346899999999999999999999999999999999999999986533222 122345799999999998765 4789


Q ss_pred             ccceehhhhhhccccCCCCCcCC
Q 045449          755 RGDVCSFGIISGGKETRSMTVGE  777 (823)
Q Consensus       755 ~~Dv~S~Gvv~~~~~~~~~~~~~  777 (823)
                      ++|||||||++|++++|..||..
T Consensus       187 ~~DiwslG~il~elltg~~pf~~  209 (332)
T cd05614         187 AVDWWSLGILIFELLTGASPFTL  209 (332)
T ss_pred             ccccccchhhhhhhhcCCCCCCC
Confidence            99999999999999999999864

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>PHA02988 hypothetical protein; Provisional

Probab=99.87  E-value=5.3e-23  Score=218.80  Aligned_cols=156  Identities=17%  Similarity=0.184  Sum_probs=123.6

Q ss_pred             cccccCHHHHHHHhccCCccceeeccC----------CeEEEEEEehHhh---HHHHHHHHHHHHHHhhcchhhHHH---
Q 045449          614 AIRRFSYHELLRATDRFSENNLIGIGN----------GMEVAVKVFHQQY---ERALKSFEDECEVRKRIRHRNLVK---  677 (823)
Q Consensus       614 ~~~~~~~~~l~~at~~f~~~~~lg~g~----------~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~---  677 (823)
                      .++.++.+++...     ....+|+|+          |..||||++....   ....+.|.+|++++++++||||++   
T Consensus        11 ~~~~i~~~~i~~~-----~~~~i~~g~~~~v~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~~~g   85 (283)
T PHA02988         11 DIKCIESDDIDKY-----TSVLIKENDQNSIYKGIFNNKEVIIRTFKKFHKGHKVLIDITENEIKNLRRIDSNNILKIYG   85 (283)
T ss_pred             cceecCHHHcCCC-----CCeEEeeCCceEEEEEEECCEEEEEEeccccccccHHHHHHHHHHHHHHHhcCCCCEEEEee
Confidence            3455666666322     124455553          6789999997543   233578899999999999999998   


Q ss_pred             -----------------------------------------HHHHHHHHhhhcCC-CCEEeccCCCCCEEeCCCCcEEEe
Q 045449          678 -----------------------------------------IISSSLEYLHFGHS-IPIIHCDLKPSNVLLDEDMVAHIS  715 (823)
Q Consensus       678 -----------------------------------------~~~~~l~~L~~~h~-~~ivHrdlk~~NiLl~~~~~~kl~  715 (823)
                                                               ++.+++.+|+++|+ .+++||||||+||++++++.+||+
T Consensus        86 ~~~~~~~~~~~~~lv~Ey~~~g~L~~~l~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~Hrdlkp~nill~~~~~~kl~  165 (283)
T PHA02988         86 FIIDIVDDLPRLSLILEYCTRGYLREVLDKEKDLSFKTKLDMAIDCCKGLYNLYKYTNKPYKNLTSVSFLVTENYKLKII  165 (283)
T ss_pred             eEEecccCCCceEEEEEeCCCCcHHHHHhhCCCCChhHHHHHHHHHHHHHHHHHhcCCCCCCcCChhhEEECCCCcEEEc
Confidence                                                     24577788888897 489999999999999999999999


Q ss_pred             ecccccccCCCCccccccccccCCCcCcccccCC--CccccccceehhhhhhccccCCCCCcCCCc
Q 045449          716 DFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTK--GRVSTRGDVCSFGIISGGKETRSMTVGETC  779 (823)
Q Consensus       716 DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~--~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~~  779 (823)
                      |||+++......     ....|+..|+|||++.+  ..++.++|||||||++|++.+|..||.+..
T Consensus       166 dfg~~~~~~~~~-----~~~~~~~~y~aPE~~~~~~~~~~~k~Di~SlGvil~el~~g~~Pf~~~~  226 (283)
T PHA02988        166 CHGLEKILSSPP-----FKNVNFMVYFSYKMLNDIFSEYTIKDDIYSLGVVLWEIFTGKIPFENLT  226 (283)
T ss_pred             ccchHhhhcccc-----ccccCcccccCHHHhhhccccccchhhhhHHHHHHHHHHHCCCCCCCCC
Confidence            999998654321     23468999999999876  679999999999999999999999997653

>cd07878 STKc_p38beta_MAPK11 Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase

Probab=99.87  E-value=1.7e-22  Score=221.36  Aligned_cols=149  Identities=30%  Similarity=0.365  Sum_probs=124.2

Q ss_pred             HHHhccCCccceeeccC------------CeEEEEEEehHhh--HHHHHHHHHHHHHHhhcchhhHHH------------
Q 045449          624 LRATDRFSENNLIGIGN------------GMEVAVKVFHQQY--ERALKSFEDECEVRKRIRHRNLVK------------  677 (823)
Q Consensus       624 ~~at~~f~~~~~lg~g~------------~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~------------  677 (823)
                      .+..++|...+.||.|+            +..||||++....  ....+.+.+|++++++++||||++            
T Consensus        11 ~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~   90 (343)
T cd07878          11 WEVPERYQNLTPVGSGAYGSVCSAYDTRLRQKVAVKKLSRPFQSLIHARRTYRELRLLKHMKHENVIGLLDVFTPATSIE   90 (343)
T ss_pred             hhhhhhhhhheecccCCCeEEEEEEECCCCCEEEEEEeCchhhhhHHHHHHHHHHHHHHhcCCCchhhhhhhhccccccc
Confidence            34556777778888775            5669999986543  233456889999999999999997            


Q ss_pred             --------------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCC
Q 045449          678 --------------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSG  725 (823)
Q Consensus       678 --------------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~  725 (823)
                                                      ++.|++++|+|+|+.+|+||||||+||+++.++.+||+|||+++....
T Consensus        91 ~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrdikp~Nil~~~~~~~kl~Dfg~~~~~~~  170 (343)
T cd07878          91 NFNEVYLVTNLMGADLNNIVKCQKLSDEHVQFLIYQLLRGLKYIHSAGIIHRDLKPSNVAVNEDCELRILDFGLARQADD  170 (343)
T ss_pred             ccCcEEEEeecCCCCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeecccCChhhEEECCCCCEEEcCCccceecCC
Confidence                                            246889999999999999999999999999999999999999987543


Q ss_pred             CCccccccccccCCCcCcccccCC-CccccccceehhhhhhccccCCCCCcCC
Q 045449          726 EDQLSKQTQTLATIGYMAPEYGTK-GRVSTRGDVCSFGIISGGKETRSMTVGE  777 (823)
Q Consensus       726 ~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~  777 (823)
                      .     .....||+.|+|||++.+ ..++.++||||+||++|++.+|..||.+
T Consensus       171 ~-----~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~  218 (343)
T cd07878         171 E-----MTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLKGKALFPG  218 (343)
T ss_pred             C-----cCCccccccccCchHhcCCccCCchhhhHhHHHHHHHHHHCCCCCCC
Confidence            2     234578999999999876 5689999999999999999999999864

Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.87  E-value=4.3e-22  Score=232.23  Aligned_cols=224  Identities=21%  Similarity=0.354  Sum_probs=128.2

Q ss_pred             hhhhccccccccCCccccccCCCCCcEEEccCCcccccCCcccccCCCCccEEEeeccccccccCccccCCCCCCeEEee
Q 045449          206 LARLALATNNLVGVVPVTIFNMSALKEISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSITNSSKLSDLELG  285 (823)
Q Consensus       206 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~lp~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls  285 (823)
                      |+.|+|++|++. .+|..+.  ++|+.|+|++|+|+ .+|..+.   ++|++|+|++|+|++ +|..+.  ++|+.|+++
T Consensus       243 L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~---~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls  312 (754)
T PRK15370        243 IQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP---EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQ  312 (754)
T ss_pred             ccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC---CCCcEEECCCCcccc-Ccccch--hhHHHHHhc
Confidence            444555555555 3343332  35666666666665 4555432   356666666666663 444332  356666666


Q ss_pred             cccccccCCCccCCCcccCcccccCccccCCCCcccccccccCCCCceEEEeecCCCCccCCccccccccccceEEecCC
Q 045449          286 ENLFSGFIPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGILPKSIGNFSLSLETILMANC  365 (823)
Q Consensus       286 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N  365 (823)
                      +|+++. +|..+.  ++|+.|++++|.+++.+.      .+  .++|+.|++++|+|+. +|..+.   .+|++|++++|
T Consensus       313 ~N~Lt~-LP~~l~--~sL~~L~Ls~N~Lt~LP~------~l--~~sL~~L~Ls~N~L~~-LP~~lp---~~L~~LdLs~N  377 (754)
T PRK15370        313 SNSLTA-LPETLP--PGLKTLEAGENALTSLPA------SL--PPELQVLDVSKNQITV-LPETLP---PTITTLDVSRN  377 (754)
T ss_pred             CCcccc-CCcccc--ccceeccccCCccccCCh------hh--cCcccEEECCCCCCCc-CChhhc---CCcCEEECCCC
Confidence            666664 333322  466677777777665432      22  2567777777777763 555442   57888888888


Q ss_pred             cceeccCccccCcccccEEEcccCcCCCCchh----cccccCCCCEEEccCCCCCCcchHhhhcCCCCCEEEcccCcCcc
Q 045449          366 SISGNIPQVVGNLSNLLVLELGGNNLTGPIPV----TFSQLQTLQAFDLTRNKLAGPITDELCHLARLHSLVLQGNKFSG  441 (823)
Q Consensus       366 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~----~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g  441 (823)
                      +|+. +|..+.  .+|+.|++++|+|+ .+|.    .++.++.+..|+|.+|.|+.   .   .+.+|+.| ++.+.+.|
T Consensus       378 ~Lt~-LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls~---~---tl~~L~~L-l~s~~~~g  446 (754)
T PRK15370        378 ALTN-LPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFSE---R---TIQNMQRL-MSSVGYQG  446 (754)
T ss_pred             cCCC-CCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCccH---H---HHHHHHHh-hhcccccC
Confidence            8874 454443  36888888888887 4444    34455788889999998872   2   33344444 44555544


Q ss_pred             -cccccccCCCCCCeEeccCCcccc
Q 045449          442 -SIPSCLGNLTSVRVLYLGLNIFTS  465 (823)
Q Consensus       442 -~~p~~~~~l~~L~~L~Ls~N~l~~  465 (823)
                       .++...+....++....-.+.+++
T Consensus       447 p~i~~~~~~~~~l~~~~~l~~a~~~  471 (754)
T PRK15370        447 PRVLFAMGDFSIVRVTRPLHQAVQG  471 (754)
T ss_pred             CcccccccccccccccchHHHHHhc
Confidence             334444445555544433444433

>cd07876 STKc_JNK2 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2

Probab=99.87  E-value=9.6e-23  Score=224.75  Aligned_cols=150  Identities=30%  Similarity=0.367  Sum_probs=126.2

Q ss_pred             HhccCCccceeeccC------------CeEEEEEEehHhh--HHHHHHHHHHHHHHhhcchhhHHH--------------
Q 045449          626 ATDRFSENNLIGIGN------------GMEVAVKVFHQQY--ERALKSFEDECEVRKRIRHRNLVK--------------  677 (823)
Q Consensus       626 at~~f~~~~~lg~g~------------~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~--------------  677 (823)
                      ..++|...+.||.|+            |..||||++....  ....+.+.+|+.++++++||||++              
T Consensus        19 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~   98 (359)
T cd07876          19 VLKRYQQLKPIGSGAQGIVCAAFDTVLGINVAVKKLSRPFQNQTHAKRAYRELVLLKCVNHKNIISLLNVFTPQKSLEEF   98 (359)
T ss_pred             hhhceEEEEEeecCCCEEEEEEEEcCCCceeEEEEecccccchhHHHHHHHHHHHHHhCCCCCEeeeeeeeccCCCcccc
Confidence            346788888888875            5679999986432  334567889999999999999987              


Q ss_pred             -----------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCc
Q 045449          678 -----------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQ  728 (823)
Q Consensus       678 -----------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~  728 (823)
                                                   ++.|++.+|+|+|+.+|+||||||+||+++.++.+||+|||+++...... 
T Consensus        99 ~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~qi~~~L~~LH~~~ivHrDlkp~NIl~~~~~~~kl~Dfg~a~~~~~~~-  177 (359)
T cd07876          99 QDVYLVMELMDANLCQVIHMELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTACTNF-  177 (359)
T ss_pred             ceeEEEEeCCCcCHHHHHhccCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEECCCCCEEEecCCCccccccCc-
Confidence                                         24688999999999999999999999999999999999999998643221 


Q ss_pred             cccccccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCC
Q 045449          729 LSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       729 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                        ......||+.|+|||++.+..++.++||||+||++|++++|..||.+.
T Consensus       178 --~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~el~tg~~pf~~~  225 (359)
T cd07876         178 --MMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGELVKGSVIFQGT  225 (359)
T ss_pred             --cCCCCcccCCCCCchhccCCCCCcchhhHHHHHHHHHHHhCCCCCCCC
Confidence              123457899999999999999999999999999999999999999754

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>cd05623 STKc_MRCK_alpha Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase alpha

Probab=99.87  E-value=1.2e-22  Score=221.41  Aligned_cols=149  Identities=20%  Similarity=0.281  Sum_probs=120.7

Q ss_pred             cCCccceeeccC------------CeEEEEEEehHhh---HHHHHHHHHHHHHHhhcchhhHHH----------------
Q 045449          629 RFSENNLIGIGN------------GMEVAVKVFHQQY---ERALKSFEDECEVRKRIRHRNLVK----------------  677 (823)
Q Consensus       629 ~f~~~~~lg~g~------------~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~----------------  677 (823)
                      +|...+.||+|+            +..||+|++....   ....+.|..|+.++..++|++|++                
T Consensus         2 ~y~~~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e   81 (332)
T cd05623           2 DFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDNQWITTLHYAFQDENNLYLVMD   81 (332)
T ss_pred             CceEEEEEEeCCCeEEEEEEECCCCCEEEEEEEeHHHHHHhhHHHHHHHHHHHHhhCCCCCEeeEEEEEecCCEEEEEEe
Confidence            566677788775            4568999986432   233456889999999999999987                


Q ss_pred             -------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccc
Q 045449          678 -------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQ  732 (823)
Q Consensus       678 -------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~  732 (823)
                                               +++|++.+|+|+|+.+|+||||||+||+++.++.+||+|||+++....... ...
T Consensus        82 y~~~g~L~~~l~~~~~~l~~~~~~~~~~qi~~al~~lH~~~iiHrDlkp~Nili~~~~~~kL~DfG~a~~~~~~~~-~~~  160 (332)
T cd05623          82 YYVGGDLLTLLSKFEDRLPEDMARFYLAEMVIAIDSVHQLHYVHRDIKPDNILMDMNGHIRLADFGSCLKLMEDGT-VQS  160 (332)
T ss_pred             ccCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeEecCCCHHHEEECCCCCEEEeecchheecccCCc-cee
Confidence                                     356889999999999999999999999999999999999999976543222 122


Q ss_pred             cccccCCCcCcccccC-----CCccccccceehhhhhhccccCCCCCcCCC
Q 045449          733 TQTLATIGYMAPEYGT-----KGRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       733 ~~~~gt~~y~aPE~~~-----~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      ...+||+.|+|||++.     ...++.++|||||||++|++++|+.||...
T Consensus       161 ~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DvwSlGvil~ell~g~~Pf~~~  211 (332)
T cd05623         161 SVAVGTPDYISPEILQAMEDGKGKYGPECDWWSLGVCMYEMLYGETPFYAE  211 (332)
T ss_pred             cccccCccccCHHHHhccccCCCCCCCcCCEEeeHHHHHHHhcCCCCCCCC
Confidence            3357999999999875     346889999999999999999999999654

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKalpha is expressed ubiquitously in many tissues. It plays a role in the regulation of peripheral actin reorganization and neurite outgrowth. It may also play a role in the transferrin iron uptake pathw

>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]

Probab=99.87  E-value=6.9e-23  Score=217.78  Aligned_cols=149  Identities=27%  Similarity=0.385  Sum_probs=127.8

Q ss_pred             CccceeeccC-----------CeEEEEEEehHhh-HHHHHHHHHHHHHHhhcchhhHHH---------------------
Q 045449          631 SENNLIGIGN-----------GMEVAVKVFHQQY-ERALKSFEDECEVRKRIRHRNLVK---------------------  677 (823)
Q Consensus       631 ~~~~~lg~g~-----------~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~---------------------  677 (823)
                      ...+.||+|.           +..||||.++... .....+|.+|+++|.+++|||||+                     
T Consensus       541 ~~~ekiGeGqFGEVhLCeveg~lkVAVK~Lr~~a~~~~r~~F~kEIkiLsqLkhPNIveLvGVC~~DePicmI~EYmEnG  620 (807)
T KOG1094|consen  541 RFKEKIGEGQFGEVHLCEVEGPLKVAVKILRPDATKNARNDFLKEIKILSRLKHPNIVELLGVCVQDDPLCMITEYMENG  620 (807)
T ss_pred             ehhhhhcCcccceeEEEEecCceEEEEeecCcccchhHHHHHHHHHHHHhccCCCCeeEEEeeeecCCchHHHHHHHhcC
Confidence            3456788875           3679999998765 445689999999999999999998                     


Q ss_pred             ---------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccc
Q 045449          678 ---------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTL  736 (823)
Q Consensus       678 ---------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~  736 (823)
                                           +.+|+..+|.|+.+.++||||+.+.|+|+|+++++||+|||++|-+...+.+......+
T Consensus       621 DLnqFl~aheapt~~t~~~vsi~tqiasgmaYLes~nfVHrd~a~rNcLv~~e~~iKiadfgmsR~lysg~yy~vqgr~v  700 (807)
T KOG1094|consen  621 DLNQFLSAHELPTAETAPGVSICTQIASGMAYLESLNFVHRDLATRNCLVDGEFTIKIADFGMSRNLYSGDYYRVQGRAV  700 (807)
T ss_pred             cHHHHHHhccCcccccchhHHHHHHHHHHHHHHHhhchhhccccccceeecCcccEEecCcccccccccCCceeeeccee
Confidence                                 24688888899999999999999999999999999999999999877777766666677


Q ss_pred             cCCCcCcccccCCCccccccceehhhhhhcccc--CCCCCcCCCc
Q 045449          737 ATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKE--TRSMTVGETC  779 (823)
Q Consensus       737 gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~--~~~~~~~~~~  779 (823)
                      -..+|||+|.+.-++++.++|||+|||.+||+.  ..+.||.+..
T Consensus       701 lpiRwmawEsillgkFttaSDvWafgvTlwE~~~~C~e~Py~~lt  745 (807)
T KOG1094|consen  701 LPIRWMAWESILLGKFTTASDVWAFGVTLWEVFMLCREQPYSQLT  745 (807)
T ss_pred             eeeeehhHHHHHhccccchhhhhhhHHHHHHHHHHHhhCchhhhh
Confidence            789999999999999999999999999999974  4677876653

>cd07871 STKc_PCTAIRE3 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase

Probab=99.87  E-value=5.6e-23  Score=219.41  Aligned_cols=149  Identities=26%  Similarity=0.312  Sum_probs=121.2

Q ss_pred             ccCCccceeeccC------------CeEEEEEEehHhh-HHHHHHHHHHHHHHhhcchhhHHH-----------------
Q 045449          628 DRFSENNLIGIGN------------GMEVAVKVFHQQY-ERALKSFEDECEVRKRIRHRNLVK-----------------  677 (823)
Q Consensus       628 ~~f~~~~~lg~g~------------~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~-----------------  677 (823)
                      ++|...+.||.|+            +..||+|+++... ......+.+|++++++++||||++                 
T Consensus         5 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~   84 (288)
T cd07871           5 ETYVKLDKLGEGTYATVFKGRSKLTENLVALKEIRLEHEEGAPCTAIREVSLLKNLKHANIVTLHDIIHTERCLTLVFEY   84 (288)
T ss_pred             ccceEeeEEecCCCEEEEEEEECCCCCEEEEEEecccccCCcchhHHHHHHHHHhCCCCCEeeEEEEEcCCCeEEEEEeC
Confidence            4566667777764            5679999986433 223356789999999999999998                 


Q ss_pred             -----------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccc
Q 045449          678 -----------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQ  734 (823)
Q Consensus       678 -----------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~  734 (823)
                                             ++.|++++|+|+|+.+|+||||||+||+++.++.+||+|||+++.......  ....
T Consensus        85 ~~~~l~~~l~~~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivH~dlkp~Nil~~~~~~~kl~DfG~~~~~~~~~~--~~~~  162 (288)
T cd07871          85 LDSDLKQYLDNCGNLMSMHNVKIFMFQLLRGLSYCHKRKILHRDLKPQNLLINEKGELKLADFGLARAKSVPTK--TYSN  162 (288)
T ss_pred             CCcCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEECCCCCEEECcCcceeeccCCCc--cccC
Confidence                                   356889999999999999999999999999999999999999986532221  1234


Q ss_pred             cccCCCcCcccccCC-CccccccceehhhhhhccccCCCCCcCCC
Q 045449          735 TLATIGYMAPEYGTK-GRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       735 ~~gt~~y~aPE~~~~-~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      ..||+.|+|||++.+ ..++.++||||+||++|++.+|..||...
T Consensus       163 ~~~~~~y~aPE~~~~~~~~~~~~DiwslG~~l~~l~~g~~pf~~~  207 (288)
T cd07871         163 EVVTLWYRPPDVLLGSTEYSTPIDMWGVGCILYEMATGRPMFPGS  207 (288)
T ss_pred             ceecccccChHHhcCCcccCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence            568999999998765 56899999999999999999999998653

Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filament

>cd07875 STKc_JNK1 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1

Probab=99.87  E-value=1.3e-22  Score=224.03  Aligned_cols=150  Identities=28%  Similarity=0.330  Sum_probs=126.3

Q ss_pred             HhccCCccceeeccC------------CeEEEEEEehHhh--HHHHHHHHHHHHHHhhcchhhHHH--------------
Q 045449          626 ATDRFSENNLIGIGN------------GMEVAVKVFHQQY--ERALKSFEDECEVRKRIRHRNLVK--------------  677 (823)
Q Consensus       626 at~~f~~~~~lg~g~------------~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~--------------  677 (823)
                      ..++|...+.||.|+            +..||||++....  ....+.+.+|+.+++.++||||++              
T Consensus        22 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~ii~~~~~~~~~~~~~~~  101 (364)
T cd07875          22 VLKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEF  101 (364)
T ss_pred             hhcceeEEEEeecCCCeEEEEEEECCCCcEEEEEEeCccccCchhHHHHHHHHHHHHhcCCCCccccceeeccccccccc
Confidence            457788888899886            4568999986432  334467889999999999999986              


Q ss_pred             -----------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCc
Q 045449          678 -----------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQ  728 (823)
Q Consensus       678 -----------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~  728 (823)
                                                   ++.|++.+|+|+|+.+|+||||||+||+++.++.+||+|||+++...... 
T Consensus       102 ~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~~-  180 (364)
T cd07875         102 QDVYIVMELMDANLCQVIQMELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSF-  180 (364)
T ss_pred             CeEEEEEeCCCCCHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhCCeecCCCCHHHEEECCCCcEEEEeCCCccccCCCC-
Confidence                                         25688899999999999999999999999999999999999998654321 


Q ss_pred             cccccccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCC
Q 045449          729 LSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       729 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                        ......||+.|+|||++.+..++.++||||+||++|++++|..||...
T Consensus       181 --~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~  228 (364)
T cd07875         181 --MMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVLFPGT  228 (364)
T ss_pred             --cccCCcccCCcCCHHHHhCCCCCchhhHHhHHHHHHHHHhCCCCCCCC
Confidence              123457899999999999999999999999999999999999998653

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>KOG1989 consensus ARK protein kinase family [Signal transduction mechanisms]

Probab=99.87  E-value=4.9e-23  Score=232.05  Aligned_cols=152  Identities=26%  Similarity=0.303  Sum_probs=122.3

Q ss_pred             CeEEEEEEehHhhHHHHHHHHHHHHHHhhcc-hhhHHH------------------------------------------
Q 045449          641 GMEVAVKVFHQQYERALKSFEDECEVRKRIR-HRNLVK------------------------------------------  677 (823)
Q Consensus       641 ~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~------------------------------------------  677 (823)
                      |..||+|++-...+.+.+...+||++|++|+ |+|||.                                          
T Consensus        62 ~~~~AlKrm~~~de~~L~~v~~EI~~MK~L~gh~nIV~yidss~~~~~~~~~~~EvllLmEyC~gg~Lvd~mn~Rlq~~l  141 (738)
T KOG1989|consen   62 GKKYALKRMYVNDEEALNAVKREIDIMKLLSGHKNIVSYIDSSAINRSSNNGVWEVLLLMEYCKGGSLVDFMNTRLQTRL  141 (738)
T ss_pred             CceeeeeeeecCCHHHHHHHHHHHHHHHHhcCCCceeeEeccccccccCCCceeEEEeehhhccCCcHHHHHHHHHhccC
Confidence            4889999998778888899999999999997 999998                                          


Q ss_pred             -------HHHHHHHHhhhcCC--CCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccc-------cccccccCCCc
Q 045449          678 -------IISSSLEYLHFGHS--IPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLS-------KQTQTLATIGY  741 (823)
Q Consensus       678 -------~~~~~l~~L~~~h~--~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~-------~~~~~~gt~~y  741 (823)
                             ++.++++++.++|.  ++|+|||||-||||+..++..||||||-|..........       ..-...-|+.|
T Consensus       142 te~eVLkIf~dv~~AVa~mH~~~pPiIHRDLKiENvLls~~g~~KLCDFGSatt~~~~~~~~~e~~~ve~eI~k~TTp~Y  221 (738)
T KOG1989|consen  142 TEDEVLKIFYDVCEAVAAMHYLKPPIIHRDLKIENVLLSADGNYKLCDFGSATTKILSPTSAQEVNYVEEEIEKYTTPQY  221 (738)
T ss_pred             ChHHHHHHHHHHHHHHHHHhcCCCccchhhhhhhheEEcCCCCEEeCcccccccccCCCccHHHHHHHHHHHHhhCCccc
Confidence                   23444455544444  569999999999999999999999999886532221100       00122358999


Q ss_pred             Cccccc---CCCccccccceehhhhhhccccCCCCCcCCC-cccccccccccCCc
Q 045449          742 MAPEYG---TKGRVSTRGDVCSFGIISGGKETRSMTVGET-CTPVRESKYEVHPA  792 (823)
Q Consensus       742 ~aPE~~---~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  792 (823)
                      +|||.+   .+.+.++|+|||++||++|++++...||++. ...+..+.|.+++.
T Consensus       222 RsPEMIDlysg~pI~eKsDIWALGclLYkLCy~t~PFe~sg~laIlng~Y~~P~~  276 (738)
T KOG1989|consen  222 RSPEMIDLYSGLPIGEKSDIWALGCLLYKLCYFTTPFEESGKLAILNGNYSFPPF  276 (738)
T ss_pred             cChHHHhhhcCCCCcchhHHHHHHHHHHHHHHhCCCcCcCcceeEEeccccCCCC
Confidence            999975   4567899999999999999999999999998 78889999988875

>cd05589 STKc_PKN Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N

Probab=99.87  E-value=2.4e-22  Score=218.32  Aligned_cols=136  Identities=24%  Similarity=0.246  Sum_probs=112.3

Q ss_pred             CeEEEEEEehHhh---HHHHHHHHHHHHHH---hhcchhhHHH-------------------------------------
Q 045449          641 GMEVAVKVFHQQY---ERALKSFEDECEVR---KRIRHRNLVK-------------------------------------  677 (823)
Q Consensus       641 ~~~vavK~~~~~~---~~~~~~~~~E~~~l---~~l~h~niv~-------------------------------------  677 (823)
                      +..||||++....   ....+.+.+|++++   ++++||||++                                     
T Consensus        24 ~~~~aiK~~~~~~~~~~~~~~~l~~e~~~~~~~~~l~hp~i~~~~~~~~~~~~~~lv~E~~~~~~L~~~~~~~~l~~~~~  103 (324)
T cd05589          24 GELYAIKALKKGDIIARDEVESLMCEKRIFETANSERHPFLVNLFACFQTEDHVCFVMEYAAGGDLMMHIHTDVFSEPRA  103 (324)
T ss_pred             CCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccccCCCChhceeeEEEcCCEEEEEEcCCCCCcHHHHhhcCCCCHHHH
Confidence            5779999997543   23345677776655   5678999998                                     


Q ss_pred             --HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccCCCccccc
Q 045449          678 --IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTR  755 (823)
Q Consensus       678 --~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~  755 (823)
                        ++.|++.+|+|+|+.+|+||||||+||+++.++.+||+|||+++.......  .....+||+.|+|||++.+..++.+
T Consensus       104 ~~~~~qi~~al~~lH~~~ivHrdlkp~Nill~~~~~~kL~Dfg~~~~~~~~~~--~~~~~~g~~~y~aPE~~~~~~~~~~  181 (324)
T cd05589         104 VFYAACVVLGLQYLHENKIVYRDLKLDNLLLDTEGFVKIADFGLCKEGMGFGD--RTSTFCGTPEFLAPEVLTETSYTRA  181 (324)
T ss_pred             HHHHHHHHHHHHHHHhCCeEecCCCHHHeEECCCCcEEeCcccCCccCCCCCC--cccccccCccccCHhHhcCCCCCcc
Confidence              357889999999999999999999999999999999999999875432221  2234679999999999998899999


Q ss_pred             cceehhhhhhccccCCCCCcCCC
Q 045449          756 GDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       756 ~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      +|||||||++|++++|..||...
T Consensus       182 ~DiwslG~il~el~~G~~pf~~~  204 (324)
T cd05589         182 VDWWGLGVLIYEMLVGESPFPGD  204 (324)
T ss_pred             cchhhHHHHHHHHHhCCCCCCCC
Confidence            99999999999999999998653

Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=99.86  E-value=6.5e-23  Score=233.45  Aligned_cols=156  Identities=22%  Similarity=0.280  Sum_probs=128.9

Q ss_pred             HHHHHHhccCCccceeeccC------------CeEEEEEEehHhh---HHHHHHHHHHHHHHhhcchhhHHH--------
Q 045449          621 HELLRATDRFSENNLIGIGN------------GMEVAVKVFHQQY---ERALKSFEDECEVRKRIRHRNLVK--------  677 (823)
Q Consensus       621 ~~l~~at~~f~~~~~lg~g~------------~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~--------  677 (823)
                      .++....++|...++||+|+            ++.||+|++.+..   .....-|..|-++|..-..+.||.        
T Consensus        68 ~~lrl~~~DfeilKvIGrGaFGEV~lVr~k~t~~VYAMK~lnK~eMlKr~~tA~F~EERDimv~~ns~Wiv~LhyAFQD~  147 (1317)
T KOG0612|consen   68 KELRLKAEDFEILKVIGRGAFGEVALVRHKSTEKVYAMKILNKWEMLKRAETACFREERDIMVFGNSEWIVQLHYAFQDE  147 (1317)
T ss_pred             HHHhCCHHhhHHHHHhcccccceeEEEEeeccccchhHHHhhHHHHhhchhHHHHHHHhHHHHcCCcHHHHHHHHHhcCc
Confidence            34444557899999999997            4446777776532   223356888999999889999998        


Q ss_pred             --------------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCC
Q 045449          678 --------------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSG  725 (823)
Q Consensus       678 --------------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~  725 (823)
                                                      ++|.++.||+.+|+.|+|||||||+|||+|..|++||+|||-+-.+..
T Consensus       148 ~~LYlVMdY~pGGDlltLlSk~~~~pE~~ArFY~aEiVlAldslH~mgyVHRDiKPDNvLld~~GHikLADFGsClkm~~  227 (1317)
T KOG0612|consen  148 RYLYLVMDYMPGGDLLTLLSKFDRLPEDWARFYTAEIVLALDSLHSMGYVHRDIKPDNVLLDKSGHIKLADFGSCLKMDA  227 (1317)
T ss_pred             cceEEEEecccCchHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHhccceeccCCcceeEecccCcEeeccchhHHhcCC
Confidence                                            468899999999999999999999999999999999999999887765


Q ss_pred             CCccccccccccCCCcCcccccC----C-CccccccceehhhhhhccccCCCCCcCC
Q 045449          726 EDQLSKQTQTLATIGYMAPEYGT----K-GRVSTRGDVCSFGIISGGKETRSMTVGE  777 (823)
Q Consensus       726 ~~~~~~~~~~~gt~~y~aPE~~~----~-~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~  777 (823)
                      +... .....+|||.|++||++.    + +.|+..+|+||+||++|||++|..||..
T Consensus       228 dG~V-~s~~aVGTPDYISPEvLqs~~~~~g~yG~ecDwWSlGV~~YEMlyG~TPFYa  283 (1317)
T KOG0612|consen  228 DGTV-RSSVAVGTPDYISPEVLQSQGDGKGEYGRECDWWSLGVFMYEMLYGETPFYA  283 (1317)
T ss_pred             CCcE-EeccccCCCCccCHHHHHhhcCCccccCCccchhhhHHHHHHHHcCCCcchH
Confidence            4442 345678999999999874    3 6799999999999999999999999965

>cd05108 PTKc_EGFR Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor

Probab=99.86  E-value=1.4e-22  Score=219.35  Aligned_cols=150  Identities=23%  Similarity=0.303  Sum_probs=120.9

Q ss_pred             cCCccceeeccC----------------CeEEEEEEehHhh-HHHHHHHHHHHHHHhhcchhhHHH--------------
Q 045449          629 RFSENNLIGIGN----------------GMEVAVKVFHQQY-ERALKSFEDECEVRKRIRHRNLVK--------------  677 (823)
Q Consensus       629 ~f~~~~~lg~g~----------------~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~--------------  677 (823)
                      +|+..+.||+|+                +..||||++.... ....++|.+|+.+++.++||||++              
T Consensus         8 ~f~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~g~~~~~~~~~v~   87 (316)
T cd05108           8 EFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTSTVQLIT   87 (316)
T ss_pred             hceeeeeeecCCCceEEEEEEecCCCccceeEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEcCCCceeee
Confidence            466666677664                1238999986432 445578999999999999999998              


Q ss_pred             --------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCcccc
Q 045449          678 --------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSK  731 (823)
Q Consensus       678 --------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~  731 (823)
                                                ++.|++.+|+|+|+.+|+||||||+||+++.++.+||+|||+++..........
T Consensus        88 e~~~~g~l~~~l~~~~~~~~~~~~~~~~~qi~~~L~~LH~~~iiH~dlkp~Nill~~~~~~kl~DfG~a~~~~~~~~~~~  167 (316)
T cd05108          88 QLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEERRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGADEKEYH  167 (316)
T ss_pred             ecCCCCCHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHhcCeeccccchhheEecCCCcEEEccccccccccCCCccee
Confidence                                      246888899999999999999999999999999999999999997654332222


Q ss_pred             ccccccCCCcCcccccCCCccccccceehhhhhhccccC-CCCCcCCC
Q 045449          732 QTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKET-RSMTVGET  778 (823)
Q Consensus       732 ~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~-~~~~~~~~  778 (823)
                      .....++..|+|||++.+..++.++|||||||++|++++ |..||.+.
T Consensus       168 ~~~~~~~~~y~apE~~~~~~~~~~~Di~slGv~l~el~t~g~~p~~~~  215 (316)
T cd05108         168 AEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGI  215 (316)
T ss_pred             ccCCccceeecChHHhccCCCCchhhhHHHHHHHHHHHcCCCCCCCCC
Confidence            222345678999999999999999999999999999886 88888664

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphor

>cd05604 STKc_SGK3 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3

Probab=99.86  E-value=3e-22  Score=217.67  Aligned_cols=136  Identities=27%  Similarity=0.275  Sum_probs=112.1

Q ss_pred             CeEEEEEEehHhh---HHHHHHHHHHHH-HHhhcchhhHHH---------------------------------------
Q 045449          641 GMEVAVKVFHQQY---ERALKSFEDECE-VRKRIRHRNLVK---------------------------------------  677 (823)
Q Consensus       641 ~~~vavK~~~~~~---~~~~~~~~~E~~-~l~~l~h~niv~---------------------------------------  677 (823)
                      |..||||++....   ....+.+..|.. +++.++||||++                                       
T Consensus        20 ~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~hp~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~   99 (325)
T cd05604          20 GKCYAVKVLQKKIVLNRKEQKHIMAERNVLLKNVKHPFLVGLHYSFQTTEKLYFVLDFVNGGELFFHLQRERSFPEPRAR   99 (325)
T ss_pred             CCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHHhCCCCCCccEEEEEecCCEEEEEEcCCCCCCHHHHHHHcCCCCHHHHH
Confidence            6789999997543   233355666665 467789999998                                       


Q ss_pred             -HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccCCCcccccc
Q 045449          678 -IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRG  756 (823)
Q Consensus       678 -~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~  756 (823)
                       ++.|++.+|+|+|+.||+||||||+|||++.++.+||+|||+++.......  .....+||+.|+|||++.+..++.++
T Consensus       100 ~~~~qi~~al~~lH~~givH~Dlkp~NIll~~~~~~kL~DfG~~~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~  177 (325)
T cd05604         100 FYAAEIASALGYLHSINIVYRDLKPENILLDSQGHVVLTDFGLCKEGIAQSD--TTTTFCGTPEYLAPEVIRKQPYDNTV  177 (325)
T ss_pred             HHHHHHHHHHHHHHHCCeeecCCCHHHeEECCCCCEEEeecCCcccCCCCCC--CcccccCChhhCCHHHHcCCCCCCcC
Confidence             357899999999999999999999999999999999999999875422211  22345799999999999999999999


Q ss_pred             ceehhhhhhccccCCCCCcCCC
Q 045449          757 DVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       757 Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      ||||+||++|++++|..||...
T Consensus       178 DvwslG~il~el~~G~~pf~~~  199 (325)
T cd05604         178 DWWCLGAVLYEMLYGLPPFYCR  199 (325)
T ss_pred             ccccccceehhhhcCCCCCCCC
Confidence            9999999999999999998653

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels,

>cd05592 STKc_nPKC_theta_delta Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta

Probab=99.86  E-value=1.8e-22  Score=218.28  Aligned_cols=137  Identities=26%  Similarity=0.243  Sum_probs=112.9

Q ss_pred             CCeEEEEEEehHhh---HHHHHHHHHHHHHHhhc-chhhHHH--------------------------------------
Q 045449          640 NGMEVAVKVFHQQY---ERALKSFEDECEVRKRI-RHRNLVK--------------------------------------  677 (823)
Q Consensus       640 ~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l-~h~niv~--------------------------------------  677 (823)
                      .+..||||+++...   ....+.+..|.+++... +||||++                                      
T Consensus        19 ~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~hp~i~~~~~~~~~~~~~~lv~e~~~gg~L~~~~~~~~~~~~~~~   98 (316)
T cd05592          19 TNEFFAIKALKKDVVLEDDDVECTMVERRVLALAWEHPFLTHLFCTFQTKEHLFFVMEYLNGGDLMFHIQSSGRFDEARA   98 (316)
T ss_pred             CCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhccCCCCccceeeEEEcCCEEEEEEcCCCCCcHHHHHHHcCCCCHHHH
Confidence            35779999997543   23345566777777654 8999998                                      


Q ss_pred             --HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccCCCccccc
Q 045449          678 --IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTR  755 (823)
Q Consensus       678 --~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~  755 (823)
                        ++.|++.+|.|+|+.+|+||||||+||+++.++.+||+|||+++......  ......+||+.|+|||++.+..++.+
T Consensus        99 ~~~~~qi~~al~~LH~~~ivH~dlkp~Nill~~~~~~kL~Dfg~a~~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~  176 (316)
T cd05592          99 RFYAAEIICGLQFLHKKGIIYRDLKLDNVLLDKDGHIKIADFGMCKENMNGE--GKASTFCGTPDYIAPEILKGQKYNES  176 (316)
T ss_pred             HHHHHHHHHHHHHHHHCCEEeCCCCHHHeEECCCCCEEEccCcCCeECCCCC--CccccccCCccccCHHHHcCCCCCCc
Confidence              35688999999999999999999999999999999999999998643222  12234579999999999998899999


Q ss_pred             cceehhhhhhccccCCCCCcCCC
Q 045449          756 GDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       756 ~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      +||||+||++|++++|..||.+.
T Consensus       177 ~DvwslG~il~ell~G~~Pf~~~  199 (316)
T cd05592         177 VDWWSFGVLLYEMLIGQSPFHGE  199 (316)
T ss_pred             ccchhHHHHHHHHHhCCCCCCCC
Confidence            99999999999999999998654

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an imp

>PHA03207 serine/threonine kinase US3; Provisional

Probab=99.86  E-value=1.1e-22  Score=226.62  Aligned_cols=145  Identities=26%  Similarity=0.294  Sum_probs=119.5

Q ss_pred             cCCccceeeccC--------------CeEEEEEEehHhhHHHHHHHHHHHHHHhhcchhhHHH-----------------
Q 045449          629 RFSENNLIGIGN--------------GMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVK-----------------  677 (823)
Q Consensus       629 ~f~~~~~lg~g~--------------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~-----------------  677 (823)
                      +|...+.||.|+              +..||||.+...     +.+.+|++++++++|||||+                 
T Consensus        93 ~y~i~~~Lg~G~~g~Vy~~~~~~~~~~~~v~vK~~~~~-----~~~~~E~~il~~l~h~~iv~~~~~~~~~~~~~lv~e~  167 (392)
T PHA03207         93 QYNILSSLTPGSEGEVFVCTKHGDEQRKKVIVKAVTGG-----KTPGREIDILKTISHRAIINLIHAYRWKSTVCMVMPK  167 (392)
T ss_pred             ceEEEEeecCCCCeEEEEEEEcCCccceeEEEEecccc-----ccHHHHHHHHHhcCCCCccceeeeEeeCCEEEEEehh
Confidence            455555666553              355788877543     34578999999999999998                 


Q ss_pred             ----------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCcccccccc
Q 045449          678 ----------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQT  735 (823)
Q Consensus       678 ----------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~  735 (823)
                                            ++.|++.+|+|+|+.+|+||||||+|||++.++.+||+|||+++..............
T Consensus       168 ~~~~l~~~l~~~~~l~~~~~~~i~~ql~~aL~~LH~~givHrDlkp~Nill~~~~~~~l~DfG~a~~~~~~~~~~~~~~~  247 (392)
T PHA03207        168 YKCDLFTYVDRSGPLPLEQAITIQRRLLEALAYLHGRGIIHRDVKTENIFLDEPENAVLGDFGAACKLDAHPDTPQCYGW  247 (392)
T ss_pred             cCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCCHHHEEEcCCCCEEEccCccccccCccccccccccc
Confidence                                  3568899999999999999999999999999999999999999876543332223356


Q ss_pred             ccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCC
Q 045449          736 LATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       736 ~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      .||+.|+|||++.+..|+.++||||+||++|++++|..||.+.
T Consensus       248 ~gt~~y~aPE~~~~~~~~~~~DvwslGvil~el~~g~~pf~~~  290 (392)
T PHA03207        248 SGTLETNSPELLALDPYCAKTDIWSAGLVLFEMSVKNVTLFGK  290 (392)
T ss_pred             ccccCccCHhHhcCCCCCchhhHHHHHHHHHHHHHCCCCCCCC
Confidence            7999999999999999999999999999999999999998653

>cd05603 STKc_SGK2 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2

Probab=99.86  E-value=3.9e-22  Score=216.39  Aligned_cols=136  Identities=25%  Similarity=0.269  Sum_probs=111.9

Q ss_pred             CeEEEEEEehHhh---HHHHHHHHHHHH-HHhhcchhhHHH---------------------------------------
Q 045449          641 GMEVAVKVFHQQY---ERALKSFEDECE-VRKRIRHRNLVK---------------------------------------  677 (823)
Q Consensus       641 ~~~vavK~~~~~~---~~~~~~~~~E~~-~l~~l~h~niv~---------------------------------------  677 (823)
                      +..||+|++....   ......+.+|.. +++.++||||++                                       
T Consensus        20 ~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~   99 (321)
T cd05603          20 GSFYAVKVLQKKTILKKKEQNHIMAERNVLLKNLKHPFLVGLHYSFQTAEKLYFVLDYVNGGELFFHLQRERCFLEPRAR   99 (321)
T ss_pred             CCEEEEEEEEHHHHHHhhHHHHHHHHHHHHHHhCCCCCccceeeEEEcCCEEEEEEcCCCCCCHHHHHHHcCCCCHHHHH
Confidence            5789999986543   223345666654 578899999998                                       


Q ss_pred             -HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccCCCcccccc
Q 045449          678 -IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRG  756 (823)
Q Consensus       678 -~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~  756 (823)
                       ++.|++++|+|+|+.+|+||||||+||+++.++.+||+|||+++.......  ......||+.|+|||++.+..++.++
T Consensus       100 ~~~~qi~~~L~~lH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~  177 (321)
T cd05603         100 FYAAEVASAIGYLHSLNIIYRDLKPENILLDSQGHVVLTDFGLCKEGVEPEE--TTSTFCGTPEYLAPEVLRKEPYDRTV  177 (321)
T ss_pred             HHHHHHHHHHHHHHHCCeEeccCCHHHeEECCCCCEEEccCCCCccCCCCCC--ccccccCCcccCCHHHhcCCCCCCcC
Confidence             356889999999999999999999999999999999999999875322221  22345799999999999888899999


Q ss_pred             ceehhhhhhccccCCCCCcCCC
Q 045449          757 DVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       757 Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      ||||+||++|++++|..||...
T Consensus       178 DiwslG~il~el~~g~~pf~~~  199 (321)
T cd05603         178 DWWCLGAVLYEMLYGLPPFYSR  199 (321)
T ss_pred             cccccchhhhhhhcCCCCCCCC
Confidence            9999999999999999998654

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1.

>cd05106 PTKc_CSF-1R Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor

Probab=99.86  E-value=1.3e-22  Score=224.37  Aligned_cols=99  Identities=26%  Similarity=0.304  Sum_probs=82.8

Q ss_pred             HHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccCCCcccccccee
Q 045449          680 SSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVC  759 (823)
Q Consensus       680 ~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~  759 (823)
                      .|++++|.|+|+.+|+||||||+|||+++++.+||+|||+++...............++..|+|||++....++.++|||
T Consensus       219 ~qi~~aL~yLH~~giiHrDLkp~Nil~~~~~~~kL~DfGla~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dvw  298 (374)
T cd05106         219 SQVAQGMDFLASKNCIHRDVAARNVLLTDGRVAKICDFGLARDIMNDSNYVVKGNARLPVKWMAPESIFDCVYTVQSDVW  298 (374)
T ss_pred             HHHHHHHHHHHHCCEEeccCchheEEEeCCCeEEEeeceeeeeccCCcceeeccCCCCccceeCHHHhcCCCCCccccHH
Confidence            56788999999999999999999999999999999999999875433222222223456789999999888999999999


Q ss_pred             hhhhhhccccC-CCCCcCCC
Q 045449          760 SFGIISGGKET-RSMTVGET  778 (823)
Q Consensus       760 S~Gvv~~~~~~-~~~~~~~~  778 (823)
                      ||||++|++++ |..||...
T Consensus       299 SlGvil~ellt~G~~Pf~~~  318 (374)
T cd05106         299 SYGILLWEIFSLGKSPYPGI  318 (374)
T ss_pred             HHHHHHHHHHhCCCCCCccc
Confidence            99999999996 99998654

Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is criti

>PLN00034 mitogen-activated protein kinase kinase; Provisional

Probab=99.86  E-value=1.4e-22  Score=222.88  Aligned_cols=134  Identities=27%  Similarity=0.405  Sum_probs=111.7

Q ss_pred             CeEEEEEEehHhh-HHHHHHHHHHHHHHhhcchhhHHH------------------------------------HHHHHH
Q 045449          641 GMEVAVKVFHQQY-ERALKSFEDECEVRKRIRHRNLVK------------------------------------IISSSL  683 (823)
Q Consensus       641 ~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~------------------------------------~~~~~l  683 (823)
                      ++.||||++.... ....+.+.+|++++++++|+||++                                    ++.|++
T Consensus        99 ~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~i~~qi~  178 (353)
T PLN00034         99 GRLYALKVIYGNHEDTVRRQICREIEILRDVNHPNVVKCHDMFDHNGEIQVLLEFMDGGSLEGTHIADEQFLADVARQIL  178 (353)
T ss_pred             CCEEEEEEEecCCcHHHHHHHHHHHHHHHhCCCCCcceeeeEeccCCeEEEEEecCCCCcccccccCCHHHHHHHHHHHH
Confidence            5779999986443 344568999999999999999998                                    356889


Q ss_pred             HHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccCC-----Cccccccce
Q 045449          684 EYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTK-----GRVSTRGDV  758 (823)
Q Consensus       684 ~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-----~~~~~~~Dv  758 (823)
                      .+|.|+|+.+|+||||||+|||++.++.+||+|||+++.......  .....+||..|+|||++..     ..++.++||
T Consensus       179 ~aL~~LH~~~ivHrDlkp~NIll~~~~~~kL~DfG~~~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~Dv  256 (353)
T PLN00034        179 SGIAYLHRRHIVHRDIKPSNLLINSAKNVKIADFGVSRILAQTMD--PCNSSVGTIAYMSPERINTDLNHGAYDGYAGDI  256 (353)
T ss_pred             HHHHHHHHCCEeecCCCHHHEEEcCCCCEEEcccccceecccccc--cccccccCccccCccccccccccCcCCCcchhH
Confidence            999999999999999999999999999999999999987643221  1234579999999998743     234568999


Q ss_pred             ehhhhhhccccCCCCCcC
Q 045449          759 CSFGIISGGKETRSMTVG  776 (823)
Q Consensus       759 ~S~Gvv~~~~~~~~~~~~  776 (823)
                      |||||++|++.+|+.||.
T Consensus       257 wslGvil~el~~g~~pf~  274 (353)
T PLN00034        257 WSLGVSILEFYLGRFPFG  274 (353)
T ss_pred             HHHHHHHHHHHhCCCCCC
Confidence            999999999999999986

>cd05591 STKc_nPKC_epsilon Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon

Probab=99.86  E-value=3.8e-22  Score=216.40  Aligned_cols=137  Identities=21%  Similarity=0.194  Sum_probs=114.8

Q ss_pred             CCeEEEEEEehHhh---HHHHHHHHHHHHHHhhc-chhhHHH--------------------------------------
Q 045449          640 NGMEVAVKVFHQQY---ERALKSFEDECEVRKRI-RHRNLVK--------------------------------------  677 (823)
Q Consensus       640 ~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l-~h~niv~--------------------------------------  677 (823)
                      .+..||||++....   ....+.+..|.+++..+ +||||++                                      
T Consensus        19 ~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~~hp~i~~~~~~~~~~~~~~lv~E~~~~~~L~~~l~~~~~~~~~~~   98 (321)
T cd05591          19 TDEVYAIKVLKKDVILQDDDVDCTMTEKRILALAAKHPFLTALHCCFQTKDRLFFVMEYVNGGDLMFQIQRSRKFDEPRS   98 (321)
T ss_pred             CCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhccCCCCccceeeEEEcCCeEEEEEeCCCCCcHHHHHHHcCCCCHHHH
Confidence            35789999997643   33446688899998876 7999998                                      


Q ss_pred             --HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccCCCccccc
Q 045449          678 --IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTR  755 (823)
Q Consensus       678 --~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~  755 (823)
                        ++.|++.+|+|+|+.+|+||||||+||+++.++.+||+|||+++.......  ......||+.|+|||++.+..++.+
T Consensus        99 ~~~~~qi~~aL~~LH~~~ivHrDikp~Nill~~~~~~kL~Dfg~~~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~  176 (321)
T cd05591          99 RFYAAEVTLALMFLHRHGVIYRDLKLDNILLDAEGHCKLADFGMCKEGILNGV--TTTTFCGTPDYIAPEILQELEYGPS  176 (321)
T ss_pred             HHHHHHHHHHHHHHHHCCeeccCCCHHHeEECCCCCEEEeecccceecccCCc--cccccccCccccCHHHHcCCCCCCc
Confidence              356888999999999999999999999999999999999999976432221  2234579999999999998899999


Q ss_pred             cceehhhhhhccccCCCCCcCCC
Q 045449          756 GDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       756 ~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      +||||+||++|++++|..||...
T Consensus       177 ~DvwslG~il~el~tg~~Pf~~~  199 (321)
T cd05591         177 VDWWALGVLMYEMMAGQPPFEAD  199 (321)
T ss_pred             cceechhHHHHHHhcCCCCCCCC
Confidence            99999999999999999999654

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to

>cd05616 STKc_cPKC_beta Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta

Probab=99.86  E-value=3.3e-22  Score=217.12  Aligned_cols=147  Identities=23%  Similarity=0.209  Sum_probs=118.7

Q ss_pred             CCccceeeccC------------CeEEEEEEehHhh---HHHHHHHHHHHHHHhhc-chhhHHH----------------
Q 045449          630 FSENNLIGIGN------------GMEVAVKVFHQQY---ERALKSFEDECEVRKRI-RHRNLVK----------------  677 (823)
Q Consensus       630 f~~~~~lg~g~------------~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l-~h~niv~----------------  677 (823)
                      |...+.||.|+            +..||||++....   ....+.+..|.+++..+ +|++|++                
T Consensus         2 f~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~E   81 (323)
T cd05616           2 FNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVVIQDDDVECTMVEKRVLALSGKPPFLTQLHSCFQTMDRLYFVME   81 (323)
T ss_pred             ceEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCeEeeEEEEEecCCEEEEEEc
Confidence            45556677664            5679999987543   23345677888888877 5777775                


Q ss_pred             ------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCcccccc
Q 045449          678 ------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQT  733 (823)
Q Consensus       678 ------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~  733 (823)
                                              ++.|++.+|+|+|+.+|+||||||+|||++.++.+||+|||+++.......  ...
T Consensus        82 ~~~~g~L~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~Nill~~~~~~kL~DfG~~~~~~~~~~--~~~  159 (323)
T cd05616          82 YVNGGDLMYQIQQVGRFKEPHAVFYAAEIAIGLFFLHSKGIIYRDLKLDNVMLDSEGHIKIADFGMCKENMWDGV--TTK  159 (323)
T ss_pred             CCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCEEecCCCHHHeEECCCCcEEEccCCCceecCCCCC--ccc
Confidence                                    357889999999999999999999999999999999999999986432221  123


Q ss_pred             ccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCC
Q 045449          734 QTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       734 ~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      ...||+.|+|||++.+..++.++|||||||++|++++|..||...
T Consensus       160 ~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~elltg~~Pf~~~  204 (323)
T cd05616         160 TFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGE  204 (323)
T ss_pred             cCCCChhhcCHHHhcCCCCCCccchhchhHHHHHHHhCCCCCCCC
Confidence            457999999999999999999999999999999999999999764

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and

>cd05587 STKc_cPKC Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C

Probab=99.86  E-value=3.6e-22  Score=216.89  Aligned_cols=147  Identities=23%  Similarity=0.200  Sum_probs=119.1

Q ss_pred             CCccceeeccC------------CeEEEEEEehHhh---HHHHHHHHHHHHHHhhcchhh-HHH----------------
Q 045449          630 FSENNLIGIGN------------GMEVAVKVFHQQY---ERALKSFEDECEVRKRIRHRN-LVK----------------  677 (823)
Q Consensus       630 f~~~~~lg~g~------------~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~n-iv~----------------  677 (823)
                      |...+.||.|+            +..||||++....   ....+.+..|++++..+.|++ |++                
T Consensus         2 y~~~~~lg~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~E   81 (324)
T cd05587           2 FNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVIIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLYFVME   81 (324)
T ss_pred             ceEEEEEeeccCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhcCCCCceeeeEEEEEcCCEEEEEEc
Confidence            45556677664            5679999997543   334567889999999997765 554                


Q ss_pred             ------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCcccccc
Q 045449          678 ------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQT  733 (823)
Q Consensus       678 ------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~  733 (823)
                                              ++.|++.+|+|+|+.+|+||||||+|||++.++.+||+|||+++.......  ...
T Consensus        82 ~~~~g~L~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~ivH~dlkp~Nill~~~~~~kL~Dfg~~~~~~~~~~--~~~  159 (324)
T cd05587          82 YVNGGDLMYHIQQVGKFKEPHAVFYAAEIAIGLFFLHSKGIIYRDLKLDNVMLDAEGHIKIADFGMCKENIFGGK--TTR  159 (324)
T ss_pred             CCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeEecCCCHHHeEEcCCCCEEEeecCcceecCCCCC--cee
Confidence                                    357889999999999999999999999999999999999999875322211  123


Q ss_pred             ccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCC
Q 045449          734 QTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       734 ~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      ...||+.|+|||++.+..++.++||||+||++|++++|..||...
T Consensus       160 ~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~elltG~~pf~~~  204 (324)
T cd05587         160 TFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQPPFDGE  204 (324)
T ss_pred             eecCCccccChhhhcCCCCCcccchhhhHHHHHHHHhCCCCCCCC
Confidence            457999999999999999999999999999999999999998654

Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory

>cd05618 STKc_aPKC_iota Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C iota

Probab=99.86  E-value=3.8e-22  Score=217.00  Aligned_cols=134  Identities=22%  Similarity=0.210  Sum_probs=113.3

Q ss_pred             CeEEEEEEehHhh---HHHHHHHHHHHHHHhhc-chhhHHH---------------------------------------
Q 045449          641 GMEVAVKVFHQQY---ERALKSFEDECEVRKRI-RHRNLVK---------------------------------------  677 (823)
Q Consensus       641 ~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l-~h~niv~---------------------------------------  677 (823)
                      +..||+|++....   ....+.+.+|+.++.++ +||||++                                       
T Consensus        20 ~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~~~~~~~~~~~~~lv~E~~~~~~L~~~~~~~~~l~~~~~~   99 (329)
T cd05618          20 ERIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFFVIEYVNGGDLMFHMQRQRKLPEEHAR   99 (329)
T ss_pred             CCEEEEEEEEhhHhcchhHHHHHHHHHHHHHhcCCCCcCCceeeEEEeCCEEEEEEeCCCCCCHHHHHHHcCCCCHHHHH
Confidence            5779999997643   23446688899988877 8999998                                       


Q ss_pred             -HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccCCCcccccc
Q 045449          678 -IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRG  756 (823)
Q Consensus       678 -~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~  756 (823)
                       +++|++.+|+|+|+.+|+||||||+||+++.++.+||+|||+++.......  ......||+.|+|||++.+..++.++
T Consensus       100 ~i~~qi~~~l~~lH~~~ivH~Dikp~Nili~~~~~~kL~DfG~~~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~  177 (329)
T cd05618         100 FYSAEISLALNYLHERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPGD--TTSTFCGTPNYIAPEILRGEDYGFSV  177 (329)
T ss_pred             HHHHHHHHHHHHHHHCCeeeCCCCHHHEEECCCCCEEEeeCCccccccCCCC--ccccccCCccccCHHHHcCCCCCCcc
Confidence             356889999999999999999999999999999999999999975432211  12345799999999999999999999


Q ss_pred             ceehhhhhhccccCCCCCcC
Q 045449          757 DVCSFGIISGGKETRSMTVG  776 (823)
Q Consensus       757 Dv~S~Gvv~~~~~~~~~~~~  776 (823)
                      |||||||++|++++|..||.
T Consensus       178 DiwslG~il~el~~g~~Pf~  197 (329)
T cd05618         178 DWWALGVLMFEMMAGRSPFD  197 (329)
T ss_pred             ceecccHHHHHHhhCCCCCc
Confidence            99999999999999999985

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target o

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=99.86  E-value=2.4e-22  Score=235.44  Aligned_cols=150  Identities=27%  Similarity=0.332  Sum_probs=123.8

Q ss_pred             ccCCccceeeccC------------CeEEEEEEehHhh---HHHHHHHHHHHHHHhhcchhhHHHH--------------
Q 045449          628 DRFSENNLIGIGN------------GMEVAVKVFHQQY---ERALKSFEDECEVRKRIRHRNLVKI--------------  678 (823)
Q Consensus       628 ~~f~~~~~lg~g~------------~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~~--------------  678 (823)
                      ++|...+.||.|+            +..||||++....   ....++|.+|++++++++||||+++              
T Consensus         2 grYeIi~~LGkGgfG~VYlA~d~~tg~~VAIK~I~~~l~~~e~~~~rflrEi~ILs~L~HPNIVkl~~v~~d~~~lyLVM   81 (932)
T PRK13184          2 QRYDIIRLIGKGGMGEVYLAYDPVCSRRVALKKIREDLSENPLLKKRFLREAKIAADLIHPGIVPVYSICSDGDPVYYTM   81 (932)
T ss_pred             CCeEEEEEEecCCCEEEEEEEECCCCcEEEEEEECcccccCHHHHHHHHHHHHHHHhCCCcCcCeEEEEEeeCCEEEEEE
Confidence            5677788888875            5679999987532   3445789999999999999999971              


Q ss_pred             -------------------------------------HHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeeccccc
Q 045449          679 -------------------------------------ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAK  721 (823)
Q Consensus       679 -------------------------------------~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~  721 (823)
                                                           +.|++++|.|+|+.+|+||||||+||+++.++.+||+|||+++
T Consensus        82 EY~eGGSL~~lL~s~~~~~~l~e~~~~~lsv~~iL~I~~QIa~AL~yLHs~GIIHRDLKPeNILLd~dg~vKLiDFGLAk  161 (932)
T PRK13184         82 PYIEGYTLKSLLKSVWQKESLSKELAEKTSVGAFLSIFHKICATIEYVHSKGVLHRDLKPDNILLGLFGEVVILDWGAAI  161 (932)
T ss_pred             EcCCCCCHHHHHHHhhhccccchhhhcccCHHHHHHHHHHHHHHHHHHHHCCccccCCchheEEEcCCCCEEEEecCcce
Confidence                                                 2367788999999999999999999999999999999999998


Q ss_pred             ccCCCCc----------------cccccccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCC
Q 045449          722 LLSGEDQ----------------LSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGE  777 (823)
Q Consensus       722 ~~~~~~~----------------~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~  777 (823)
                      .......                .......+||+.|+|||++.+..++.++||||+||+++++++|..||..
T Consensus       162 ~i~~~~~~~~~l~~~~~~s~~s~~t~~g~~vGT~~YmAPE~l~g~~~S~kSDIWSLGVILyELLTG~~PF~~  233 (932)
T PRK13184        162 FKKLEEEDLLDIDVDERNICYSSMTIPGKIVGTPDYMAPERLLGVPASESTDIYALGVILYQMLTLSFPYRR  233 (932)
T ss_pred             ecccccccccccccccccccccccccCCCCCCCCCCCCHHHhcCCCCCcHhHHHHHHHHHHHHHHCCCCCCC
Confidence            7621110                0111235799999999999999999999999999999999999999865

>KOG0604 consensus MAP kinase-activated protein kinase 2 [Signal transduction mechanisms]

Probab=99.86  E-value=2.1e-23  Score=205.43  Aligned_cols=152  Identities=22%  Similarity=0.258  Sum_probs=117.4

Q ss_pred             HHHHHHHHHHhhc-chhhHHH----------------------------------------------HHHHHHHHhhhcC
Q 045449          658 KSFEDECEVRKRI-RHRNLVK----------------------------------------------IISSSLEYLHFGH  690 (823)
Q Consensus       658 ~~~~~E~~~l~~l-~h~niv~----------------------------------------------~~~~~l~~L~~~h  690 (823)
                      ...++|+++--+. .|||||.                                              ++.|+..++.|+|
T Consensus        99 ~KARrEVeLHw~~s~h~~iV~IidVyeNs~~~rkcLLiVmE~meGGeLfsriq~~g~~afTErea~eI~~qI~~Av~~lH  178 (400)
T KOG0604|consen   99 PKARREVELHWMASGHPHIVSIIDVYENSYQGRKCLLIVMECMEGGELFSRIQDRGDQAFTEREASEIMKQIGLAVRYLH  178 (400)
T ss_pred             HHHHhHhhhhhhhcCCCceEEeehhhhhhccCceeeEeeeecccchHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHH
Confidence            4577888876555 7999998                                              3567888999999


Q ss_pred             CCCEEeccCCCCCEEeCC---CCcEEEeecccccccCCCCccccccccccCCCcCcccccCCCccccccceehhhhhhcc
Q 045449          691 SIPIIHCDLKPSNVLLDE---DMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGG  767 (823)
Q Consensus       691 ~~~ivHrdlk~~NiLl~~---~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~  767 (823)
                      +..|.|||+||+|+|...   +..+||+|||+|+.-...   ....+.+-||.|.|||++...+|+..+|+||+||++|-
T Consensus       179 ~~nIAHRDlKpENLLyt~t~~na~lKLtDfGFAK~t~~~---~~L~TPc~TPyYvaPevlg~eKydkscdmwSlgVimYI  255 (400)
T KOG0604|consen  179 SMNIAHRDLKPENLLYTTTSPNAPLKLTDFGFAKETQEP---GDLMTPCFTPYYVAPEVLGPEKYDKSCDMWSLGVIMYI  255 (400)
T ss_pred             hcchhhccCChhheeeecCCCCcceEecccccccccCCC---ccccCCcccccccCHHHhCchhcCCCCCccchhHHHHH
Confidence            999999999999999963   458999999999975432   22445788999999999999999999999999999999


Q ss_pred             ccCCCCCcCCC---------cccccccccccC-CcccccccCCCccccccccccc
Q 045449          768 KETRSMTVGET---------CTPVRESKYEVH-PATTTIMEHPLPRVGEVMDVDR  812 (823)
Q Consensus       768 ~~~~~~~~~~~---------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  812 (823)
                      ++.|-.||...         ...++.+.|+++ |++..+.+.....++.++..++
T Consensus       256 lLCGyPPFYS~hg~aispgMk~rI~~gqy~FP~pEWs~VSe~aKdlIR~LLkt~P  310 (400)
T KOG0604|consen  256 LLCGYPPFYSNHGLAISPGMKRRIRTGQYEFPEPEWSCVSEAAKDLIRKLLKTEP  310 (400)
T ss_pred             hhcCCCcccccCCccCChhHHhHhhccCccCCChhHhHHHHHHHHHHHHHhcCCc
Confidence            99999999654         345666677665 3444444444444454444443

>cd07862 STKc_CDK6 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6

Probab=99.86  E-value=2.3e-22  Score=214.82  Aligned_cols=135  Identities=30%  Similarity=0.342  Sum_probs=110.8

Q ss_pred             CeEEEEEEehHhh--HHHHHHHHHHHHHHhhc---chhhHHH--------------------------------------
Q 045449          641 GMEVAVKVFHQQY--ERALKSFEDECEVRKRI---RHRNLVK--------------------------------------  677 (823)
Q Consensus       641 ~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l---~h~niv~--------------------------------------  677 (823)
                      +..||||+++...  ......+.+|+++++++   +||||++                                      
T Consensus        27 ~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~hpniv~~~~~~~~~~~~~~~~~~lv~e~~~~~l~~~~~~~~~~~  106 (290)
T cd07862          27 GRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRTDRETKLTLVFEHVDQDLTTYLDKVPEPG  106 (290)
T ss_pred             CeEEEEEEEecccCCCCchHHHHHHHHHHHhhcccCCCCcceEEEEEecccCCCCCcEEEEEccCCCCHHHHHHhCCCCC
Confidence            4679999886432  22234566788777766   6999986                                      


Q ss_pred             --------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccCC
Q 045449          678 --------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTK  749 (823)
Q Consensus       678 --------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~  749 (823)
                              ++.|++++|+|+|+.+|+||||||+||+++.++.+||+|||+++......   ......||+.|+|||++.+
T Consensus       107 ~~~~~~~~i~~qi~~aL~~lH~~~iiH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~---~~~~~~~~~~y~aPE~~~~  183 (290)
T cd07862         107 VPTETIKDMMFQLLRGLDFLHSHRVVHRDLKPQNILVTSSGQIKLADFGLARIYSFQM---ALTSVVVTLWYRAPEVLLQ  183 (290)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCeeeCCCCHHHEEEcCCCCEEEccccceEeccCCc---ccccccccccccChHHHhC
Confidence                    35688899999999999999999999999999999999999998754331   2234578999999999988


Q ss_pred             CccccccceehhhhhhccccCCCCCcCCC
Q 045449          750 GRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       750 ~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      ..++.++|||||||++|++++|..||.+.
T Consensus       184 ~~~~~~~DiwslG~il~el~~g~~~f~~~  212 (290)
T cd07862         184 SSYATPVDLWSVGCIFAEMFRRKPLFRGS  212 (290)
T ss_pred             CCCCCccchHHHHHHHHHHHcCCCCcCCC
Confidence            88999999999999999999999998754

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytopla

>cd05096 PTKc_DDR1 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1

Probab=99.86  E-value=1.8e-22  Score=217.36  Aligned_cols=138  Identities=25%  Similarity=0.387  Sum_probs=112.3

Q ss_pred             CeEEEEEEehHhh-HHHHHHHHHHHHHHhhcchhhHHH------------------------------------------
Q 045449          641 GMEVAVKVFHQQY-ERALKSFEDECEVRKRIRHRNLVK------------------------------------------  677 (823)
Q Consensus       641 ~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~------------------------------------------  677 (823)
                      +..||||++.... .....+|.+|++++.+++||||++                                          
T Consensus        46 ~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~  125 (304)
T cd05096          46 PLLVAVKILRPDANKNARNDFLKEVKILSRLKDPNIIRLLGVCVDEDPLCMITEYMENGDLNQFLSSHHLDDKEENGNDA  125 (304)
T ss_pred             ceEEEEEEecCCCCHHHHHHHHHHHHHHhhcCCCCeeEEEEEEecCCceEEEEecCCCCcHHHHHHhccccccccccccc
Confidence            3579999987543 344578999999999999999887                                          


Q ss_pred             -----------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCC
Q 045449          678 -----------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIG  740 (823)
Q Consensus       678 -----------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~  740 (823)
                                       ++.|++.+|.|+|+.+|+||||||+||+++.++.+||+|||+++...............++..
T Consensus       126 ~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~~ivH~dlkp~Nill~~~~~~kl~DfG~~~~~~~~~~~~~~~~~~~~~~  205 (304)
T cd05096         126 VPPAHCLPAISYSSLLHVALQIASGMKYLSSLNFVHRDLATRNCLVGENLTIKIADFGMSRNLYAGDYYRIQGRAVLPIR  205 (304)
T ss_pred             cccccccccccHHHHHHHHHHHHHHHHHHHHCCccccCcchhheEEcCCccEEECCCccceecccCceeEecCcCCCCcc
Confidence                             134677889999999999999999999999999999999999987644333222333456889


Q ss_pred             cCcccccCCCccccccceehhhhhhccccC--CCCCcCCC
Q 045449          741 YMAPEYGTKGRVSTRGDVCSFGIISGGKET--RSMTVGET  778 (823)
Q Consensus       741 y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~--~~~~~~~~  778 (823)
                      |+|||++..+.++.++|||||||++|++++  +..|+.+.
T Consensus       206 y~aPE~~~~~~~~~~~Dv~slG~~l~el~~~~~~~p~~~~  245 (304)
T cd05096         206 WMAWECILMGKFTTASDVWAFGVTLWEILMLCKEQPYGEL  245 (304)
T ss_pred             ccCHHHHhcCCCCchhhhHHHHHHHHHHHHccCCCCCCcC
Confidence            999999988889999999999999999875  55677654

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in k

>cd05588 STKc_aPKC Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C

Probab=99.86  E-value=4.4e-22  Score=216.58  Aligned_cols=134  Identities=23%  Similarity=0.212  Sum_probs=113.9

Q ss_pred             CeEEEEEEehHhh---HHHHHHHHHHHHHHhhc-chhhHHH---------------------------------------
Q 045449          641 GMEVAVKVFHQQY---ERALKSFEDECEVRKRI-RHRNLVK---------------------------------------  677 (823)
Q Consensus       641 ~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l-~h~niv~---------------------------------------  677 (823)
                      +..||||+++...   ....+.+.+|+.++.++ +||||++                                       
T Consensus        20 ~~~~aiK~i~~~~~~~~~~~~~~~~e~~il~~~~~hp~Iv~~~~~~~~~~~~~lv~e~~~~g~L~~~~~~~~~l~~~~~~   99 (329)
T cd05588          20 RRIYAMKVIKKELVNDDEDIDWVQTEKHVFETASNHPFLVGLHSCFQTESRLFFVIEFVSGGDLMFHMQRQRKLPEEHAR   99 (329)
T ss_pred             CCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCCCCceEEEEEcCCEEEEEEeCCCCCCHHHHHHHcCCCCHHHHH
Confidence            6789999997643   23446788999999998 7999998                                       


Q ss_pred             -HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccCCCcccccc
Q 045449          678 -IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRG  756 (823)
Q Consensus       678 -~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~  756 (823)
                       ++.|++.+|+|+|+.+|+||||||+||+++.++.+||+|||+++.......  ......||+.|+|||++.+..++.++
T Consensus       100 ~~~~qi~~~l~~lH~~~ivH~dlkp~Nili~~~~~~kL~Dfg~~~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~  177 (329)
T cd05588         100 FYSAEISLALNFLHERGIIYRDLKLDNVLLDAEGHIKLTDYGMCKEGIRPGD--TTSTFCGTPNYIAPEILRGEDYGFSV  177 (329)
T ss_pred             HHHHHHHHHHHHHHHCCeEecCCCHHHeEECCCCCEEECcCccccccccCCC--ccccccCCccccCHHHHcCCCCCCcc
Confidence             356889999999999999999999999999999999999999975322111  22345799999999999999999999


Q ss_pred             ceehhhhhhccccCCCCCcC
Q 045449          757 DVCSFGIISGGKETRSMTVG  776 (823)
Q Consensus       757 Dv~S~Gvv~~~~~~~~~~~~  776 (823)
                      ||||+||++|++++|..||.
T Consensus       178 DiwslG~~l~el~~g~~Pf~  197 (329)
T cd05588         178 DWWALGVLMFEMMAGRSPFD  197 (329)
T ss_pred             ceechHHHHHHHHHCCCCcc
Confidence            99999999999999999985

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions incl

>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.86  E-value=9.2e-23  Score=216.64  Aligned_cols=131  Identities=27%  Similarity=0.349  Sum_probs=111.2

Q ss_pred             CeEEEEEEehHh---hHHHHHHHHHHHHHHhhcchhhHHHH---------------------------------------
Q 045449          641 GMEVAVKVFHQQ---YERALKSFEDECEVRKRIRHRNLVKI---------------------------------------  678 (823)
Q Consensus       641 ~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~~---------------------------------------  678 (823)
                      ...||||.+.-.   .....+++..||..+.+++|||+|.+                                       
T Consensus        51 ~evVAIKKMsySGKQs~EKWqDIlKEVrFL~~l~HPntieYkgCyLre~TaWLVMEYClGSAsDlleVhkKplqEvEIAA  130 (948)
T KOG0577|consen   51 SEVVAIKKMSYSGKQSNEKWQDILKEVRFLRQLRHPNTIEYKGCYLREHTAWLVMEYCLGSASDLLEVHKKPLQEVEIAA  130 (948)
T ss_pred             cceeeeeeccccccccHHHHHHHHHHHHHHHhccCCCcccccceeeccchHHHHHHHHhccHHHHHHHHhccchHHHHHH
Confidence            467999998532   33445788999999999999999982                                       


Q ss_pred             -HHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccC---CCcccc
Q 045449          679 -ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGT---KGRVST  754 (823)
Q Consensus       679 -~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~---~~~~~~  754 (823)
                       ..+++.+|.|+|+.+.||||||..|||+++.|.+||+|||.|....+.      ..++|||.|||||++.   .+.|+-
T Consensus       131 i~~gaL~gLaYLHS~~~IHRDiKAGNILLse~g~VKLaDFGSAsi~~PA------nsFvGTPywMAPEVILAMDEGqYdg  204 (948)
T KOG0577|consen  131 ITHGALQGLAYLHSHNRIHRDIKAGNILLSEPGLVKLADFGSASIMAPA------NSFVGTPYWMAPEVILAMDEGQYDG  204 (948)
T ss_pred             HHHHHHHHHHHHHHhhHHhhhccccceEecCCCeeeeccccchhhcCch------hcccCCccccchhHheeccccccCC
Confidence             236788899999999999999999999999999999999999876432      3589999999999875   467999


Q ss_pred             ccceehhhhhhccccCCCCCcCC
Q 045449          755 RGDVCSFGIISGGKETRSMTVGE  777 (823)
Q Consensus       755 ~~Dv~S~Gvv~~~~~~~~~~~~~  777 (823)
                      |+||||+|+..-|+..++.|...
T Consensus       205 kvDvWSLGITCIELAERkPPlFn  227 (948)
T KOG0577|consen  205 KVDVWSLGITCIELAERKPPLFN  227 (948)
T ss_pred             ccceeeccchhhhhhhcCCCccC
Confidence            99999999999999888888654

>cd05590 STKc_nPKC_eta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta

Probab=99.86  E-value=5.2e-22  Score=215.12  Aligned_cols=136  Identities=24%  Similarity=0.217  Sum_probs=114.3

Q ss_pred             CeEEEEEEehHhh---HHHHHHHHHHHHHHhhc-chhhHHH---------------------------------------
Q 045449          641 GMEVAVKVFHQQY---ERALKSFEDECEVRKRI-RHRNLVK---------------------------------------  677 (823)
Q Consensus       641 ~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l-~h~niv~---------------------------------------  677 (823)
                      +..||||++....   ....+.+..|.+++..+ +||||++                                       
T Consensus        20 ~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~h~~iv~~~~~~~~~~~~~iv~Ey~~~g~L~~~i~~~~~l~~~~~~   99 (320)
T cd05590          20 GRLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLYCCFQTPDRLFFVMEFVNGGDLMFHIQKSRRFDEARAR   99 (320)
T ss_pred             CCEEEEEEEEHHHHhhccHHHHHHHHHHHHHhccCCCchhceeeEEEcCCEEEEEEcCCCCchHHHHHHHcCCCCHHHHH
Confidence            5789999997543   23456778899888876 6999998                                       


Q ss_pred             -HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccCCCcccccc
Q 045449          678 -IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRG  756 (823)
Q Consensus       678 -~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~  756 (823)
                       ++.|++.+|+|+|+.+|+||||||+||+++.++.+||+|||+++.......  ......||+.|+|||++.+..++.++
T Consensus       100 ~~~~ql~~~L~~lH~~~ivH~dlkp~NIli~~~~~~kL~DfG~~~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~  177 (320)
T cd05590         100 FYAAEITSALMFLHDKGIIYRDLKLDNVLLDHEGHCKLADFGMCKEGIFNGK--TTSTFCGTPDYIAPEILQEMLYGPSV  177 (320)
T ss_pred             HHHHHHHHHHHHHHHCCeEeCCCCHHHeEECCCCcEEEeeCCCCeecCcCCC--cccccccCccccCHHHHcCCCCCCcc
Confidence             356889999999999999999999999999999999999999876432211  22345799999999999988999999


Q ss_pred             ceehhhhhhccccCCCCCcCCC
Q 045449          757 DVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       757 Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      ||||+||++|++++|..||...
T Consensus       178 DiwslG~il~el~~g~~Pf~~~  199 (320)
T cd05590         178 DWWAMGVLLYEMLCGHAPFEAE  199 (320)
T ss_pred             chhhhHHHHHHHhhCCCCCCCC
Confidence            9999999999999999998654

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signal

>PTZ00036 glycogen synthase kinase; Provisional

Probab=99.86  E-value=2.1e-22  Score=227.17  Aligned_cols=145  Identities=27%  Similarity=0.298  Sum_probs=118.5

Q ss_pred             hccCCccceeeccC------------CeEEEEEEehHhhHHHHHHHHHHHHHHhhcchhhHHH-----------------
Q 045449          627 TDRFSENNLIGIGN------------GMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVK-----------------  677 (823)
Q Consensus       627 t~~f~~~~~lg~g~------------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~-----------------  677 (823)
                      .++|...+.||.|+            +..||||++....    ....+|+.++++++|||||+                 
T Consensus        65 ~~~y~~~~~LG~G~fg~Vy~~~~~~~~~~vAiK~i~~~~----~~~~~Ei~il~~l~h~niv~l~~~~~~~~~~~~~~~~  140 (440)
T PTZ00036         65 NKSYKLGNIIGNGSFGVVYEAICIDTSEKVAIKKVLQDP----QYKNRELLIMKNLNHINIIFLKDYYYTECFKKNEKNI  140 (440)
T ss_pred             CCeEEEeEEEEeCCCEEEEEEEECCCCCEEEEEEEecCc----chHHHHHHHHHhcCCCCCcceeeeEeecccccCCCce
Confidence            45688888899885            5669999885432    23457999999999999985                 


Q ss_pred             ----------------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCC-CcEEEeecccccc
Q 045449          678 ----------------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDED-MVAHISDFGIAKL  722 (823)
Q Consensus       678 ----------------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~-~~~kl~DfGla~~  722 (823)
                                                        ++.|++.+|+|+|+.+|+||||||+|||++.+ +.+||+|||+|+.
T Consensus       141 ~l~lvmE~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~qi~~gL~yLH~~~IiHrDLKp~NILl~~~~~~vkL~DFGla~~  220 (440)
T PTZ00036        141 FLNVVMEFIPQTVHKYMKHYARNNHALPLFLVKLYSYQLCRALAYIHSKFICHRDLKPQNLLIDPNTHTLKLCDFGSAKN  220 (440)
T ss_pred             EEEEEEecCCccHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHCCEecCCcCHHHEEEcCCCCceeeeccccchh
Confidence                                              13478889999999999999999999999965 4799999999987


Q ss_pred             cCCCCccccccccccCCCcCcccccCCC-ccccccceehhhhhhccccCCCCCcCCC
Q 045449          723 LSGEDQLSKQTQTLATIGYMAPEYGTKG-RVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       723 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      +.....   .....||+.|+|||++.+. .|+.++||||+||++|++++|..||.+.
T Consensus       221 ~~~~~~---~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlGvil~elltG~~pf~~~  274 (440)
T PTZ00036        221 LLAGQR---SVSYICSRFYRAPELMLGATNYTTHIDLWSLGCIIAEMILGYPIFSGQ  274 (440)
T ss_pred             ccCCCC---cccCCCCcCccCHHHhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence            643322   2345789999999987654 6899999999999999999999998653

>cd05054 PTKc_VEGFR Catalytic domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors

Probab=99.86  E-value=2.4e-22  Score=219.14  Aligned_cols=99  Identities=26%  Similarity=0.316  Sum_probs=83.8

Q ss_pred             HHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccCCCcccccccee
Q 045449          680 SSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVC  759 (823)
Q Consensus       680 ~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~  759 (823)
                      .|++.+|.|+|+.+|+||||||+||+++.++.+||+|||+++.+.............++..|+|||++.+..++.++|||
T Consensus       180 ~qi~~aL~~lH~~~ivHrDikp~Nill~~~~~vkL~DfG~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~  259 (337)
T cd05054         180 FQVARGMEFLASRKCIHRDLAARNILLSENNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPESIFDKVYTTQSDVW  259 (337)
T ss_pred             HHHHHHHHHHHhCCeecCCCCcceEEEeCCCcEEEeccccchhcccCcchhhccCCCCCccccCcHHhcCCCCCccccHH
Confidence            46888999999999999999999999999999999999999876433322222334567889999999999999999999


Q ss_pred             hhhhhhccccC-CCCCcCCC
Q 045449          760 SFGIISGGKET-RSMTVGET  778 (823)
Q Consensus       760 S~Gvv~~~~~~-~~~~~~~~  778 (823)
                      ||||+++++++ |..||.+.
T Consensus       260 SlGv~l~el~t~g~~p~~~~  279 (337)
T cd05054         260 SFGVLLWEIFSLGASPYPGV  279 (337)
T ss_pred             HHHHHHHHHHHcCCCCCCCC
Confidence            99999999997 88888653

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to recepto

>cd07853 STKc_NLK Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase

Probab=99.86  E-value=4e-22  Score=220.93  Aligned_cols=148  Identities=27%  Similarity=0.373  Sum_probs=120.6

Q ss_pred             CCccceeeccC------------CeEEEEEEehHhh--HHHHHHHHHHHHHHhhcchhhHHH------------------
Q 045449          630 FSENNLIGIGN------------GMEVAVKVFHQQY--ERALKSFEDECEVRKRIRHRNLVK------------------  677 (823)
Q Consensus       630 f~~~~~lg~g~------------~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~------------------  677 (823)
                      |+..+.||.|+            +..||||++....  ....+++.+|+++++.++|+||++                  
T Consensus         2 ~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~l   81 (372)
T cd07853           2 VEPDRPIGYGAFGVVWSVTDPRDGKRVALKKMPNVFQNLVSCKRVFRELKMLCFFKHDNVLSALDILQPPHIDPFEEIYV   81 (372)
T ss_pred             CcccceeeeCCCEEEEEEEECCCCCEEEEEeccccccchHHHHHHHHHHHHHHhCCCCCcCCHhheecCCCccccceEEE
Confidence            55566777664            5679999886432  234467899999999999999986                  


Q ss_pred             --------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCcccc
Q 045449          678 --------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSK  731 (823)
Q Consensus       678 --------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~  731 (823)
                                                ++.|++.+|+|+|+.+|+||||||+||+++.++.+||+|||+++....... ..
T Consensus        82 v~e~~~~~l~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~~ivH~dlkp~Nili~~~~~~kL~Dfg~a~~~~~~~~-~~  160 (372)
T cd07853          82 VTELMQSDLHKIIVSPQPLSSDHVKVFLYQILRGLKYLHSAGILHRDIKPGNLLVNSNCVLKICDFGLARVEEPDES-KH  160 (372)
T ss_pred             EeeccccCHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCChHHEEECCCCCEEeccccceeecccCcc-cc
Confidence                                      256889999999999999999999999999999999999999986543222 12


Q ss_pred             ccccccCCCcCcccccCCC-ccccccceehhhhhhccccCCCCCcCCC
Q 045449          732 QTQTLATIGYMAPEYGTKG-RVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       732 ~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      .....+|+.|+|||++.+. .++.++||||+||+++++++|+.||.+.
T Consensus       161 ~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~  208 (372)
T cd07853         161 MTQEVVTQYYRAPEILMGSRHYTSAVDIWSVGCIFAELLGRRILFQAQ  208 (372)
T ss_pred             CCCCCcCCCcCCHHHHcCCCCCCcHHHHHhHHHHHHHHHcCCCCCCCC
Confidence            2345689999999998764 4799999999999999999999998653

Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription

>cd05602 STKc_SGK1 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1

Probab=99.86  E-value=5.6e-22  Score=215.48  Aligned_cols=137  Identities=25%  Similarity=0.248  Sum_probs=111.3

Q ss_pred             CCeEEEEEEehHhh---HHHHHHHHHHHH-HHhhcchhhHHH--------------------------------------
Q 045449          640 NGMEVAVKVFHQQY---ERALKSFEDECE-VRKRIRHRNLVK--------------------------------------  677 (823)
Q Consensus       640 ~~~~vavK~~~~~~---~~~~~~~~~E~~-~l~~l~h~niv~--------------------------------------  677 (823)
                      .+..||+|++....   ......+..|.. +++.++||||++                                      
T Consensus        19 ~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~h~~Iv~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~   98 (325)
T cd05602          19 EEKFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSFQTADKLYFVLDYINGGELFYHLQRERCFLEPRA   98 (325)
T ss_pred             CCCEEEEEEEEHHHHHhhhHHHHHHHHHHHHHHhCCCCCCCceeEEEEcCCeEEEEEeCCCCCcHHHHHHhcCCCCHHHH
Confidence            35779999997543   222334555544 567789999998                                      


Q ss_pred             --HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccCCCccccc
Q 045449          678 --IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTR  755 (823)
Q Consensus       678 --~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~  755 (823)
                        ++.|++++|+|+|+.||+||||||+||+++.++.+||+|||+++.......  .....+||+.|+|||++.+..++.+
T Consensus        99 ~~~~~qi~~~L~~lH~~giiHrDlkp~Nili~~~~~~kl~DfG~a~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~  176 (325)
T cd05602          99 RFYAAEIASALGYLHSLNIVYRDLKPENILLDSQGHIVLTDFGLCKENIEHNG--TTSTFCGTPEYLAPEVLHKQPYDRT  176 (325)
T ss_pred             HHHHHHHHHHHHHHHHCCeEecCCCHHHeEECCCCCEEEccCCCCcccccCCC--CcccccCCccccCHHHHcCCCCCCc
Confidence              357899999999999999999999999999999999999999976432221  2234579999999999999999999


Q ss_pred             cceehhhhhhccccCCCCCcCCC
Q 045449          756 GDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       756 ~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      +||||+||++|++++|..||...
T Consensus       177 ~DiwslG~il~el~~g~~pf~~~  199 (325)
T cd05602         177 VDWWCLGAVLYEMLYGLPPFYSR  199 (325)
T ss_pred             cccccccHHHHHHhcCCCCCCCC
Confidence            99999999999999999998653

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt

>cd05575 STKc_SGK Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase

Probab=99.86  E-value=5.8e-22  Score=215.21  Aligned_cols=136  Identities=26%  Similarity=0.270  Sum_probs=111.3

Q ss_pred             CeEEEEEEehHhh---HHHHHHHHHHHH-HHhhcchhhHHH---------------------------------------
Q 045449          641 GMEVAVKVFHQQY---ERALKSFEDECE-VRKRIRHRNLVK---------------------------------------  677 (823)
Q Consensus       641 ~~~vavK~~~~~~---~~~~~~~~~E~~-~l~~l~h~niv~---------------------------------------  677 (823)
                      |+.||||++....   ....+++..|.. +++.++||||++                                       
T Consensus        20 ~~~vaiK~~~~~~~~~~~~~~~~~~e~~~~~~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~   99 (323)
T cd05575          20 GKFYAVKVLQKKAILKKKEQKHIMAERNVLLKNVKHPFLVGLHYSFQTADKLYFVLDYVNGGELFFHLQRERSFPEPRAR   99 (323)
T ss_pred             CCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhhCCCCCCCCeeEEEEeCCEEEEEEcCCCCCCHHHHHHhcCCCCHHHHH
Confidence            6789999997543   222345555655 567899999998                                       


Q ss_pred             -HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccCCCcccccc
Q 045449          678 -IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRG  756 (823)
Q Consensus       678 -~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~  756 (823)
                       ++.|++.+|+|+|+.+|+||||||+|||++.++.+||+|||+++.......  ......||+.|+|||++.+..++.++
T Consensus       100 ~~~~qi~~~l~~lH~~givH~dikp~NIll~~~~~~kl~Dfg~~~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~  177 (323)
T cd05575         100 FYAAEIASALGYLHSLNIIYRDLKPENILLDSQGHVVLTDFGLCKEGIEHSK--TTSTFCGTPEYLAPEVLRKQPYDRTV  177 (323)
T ss_pred             HHHHHHHHHHHHHHHCCeEeCCCCHHHeEECCCCcEEEeccCCCcccccCCC--ccccccCChhhcChhhhcCCCCCccc
Confidence             356889999999999999999999999999999999999999875432221  22345799999999999998999999


Q ss_pred             ceehhhhhhccccCCCCCcCCC
Q 045449          757 DVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       757 Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      |||||||++|++++|..||...
T Consensus       178 DvwslG~il~ell~g~~pf~~~  199 (323)
T cd05575         178 DWWCLGAVLYEMLYGLPPFYSR  199 (323)
T ss_pred             cccccchhhhhhhcCCCCCCCC
Confidence            9999999999999999998653

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell pr

>PHA03211 serine/threonine kinase US3; Provisional

Probab=99.86  E-value=2.4e-22  Score=225.82  Aligned_cols=140  Identities=22%  Similarity=0.252  Sum_probs=115.6

Q ss_pred             cCCccceeeccC------------CeEEEEEEehHhhHHHHHHHHHHHHHHhhcchhhHHH-------------------
Q 045449          629 RFSENNLIGIGN------------GMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVK-------------------  677 (823)
Q Consensus       629 ~f~~~~~lg~g~------------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~-------------------  677 (823)
                      +|...+.||.|+            +..||||...      ...+.+|++++++++|+|||+                   
T Consensus       170 gy~i~~~Lg~G~~G~Vy~a~~~~~~~~vavK~~~------~~~~~~E~~iL~~L~HpnIv~l~~~~~~~~~~~lv~e~~~  243 (461)
T PHA03211        170 GFAIHRALTPGSEGCVFESSHPDYPQRVVVKAGW------YASSVHEARLLRRLSHPAVLALLDVRVVGGLTCLVLPKYR  243 (461)
T ss_pred             CeEEEEEEccCCCeEEEEEEECCCCCEEEEeccc------ccCHHHHHHHHHHCCCCCCCcEEEEEEECCEEEEEEEccC
Confidence            577778888876            4558888532      234678999999999999998                   


Q ss_pred             ---------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccc
Q 045449          678 ---------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTL  736 (823)
Q Consensus       678 ---------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~  736 (823)
                                           ++.|++.+|+|+|+.+|+||||||+|||++.++.+||+|||+++...............
T Consensus       244 ~~L~~~l~~~~~~l~~~~~~~i~~qi~~aL~yLH~~gIvHrDLKP~NILl~~~~~vkL~DFGla~~~~~~~~~~~~~~~~  323 (461)
T PHA03211        244 SDLYTYLGARLRPLGLAQVTAVARQLLSAIDYIHGEGIIHRDIKTENVLVNGPEDICLGDFGAACFARGSWSTPFHYGIA  323 (461)
T ss_pred             CCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCEEECcCCHHHEEECCCCCEEEcccCCceecccccccccccccC
Confidence                                 35688899999999999999999999999999999999999998764332222223457


Q ss_pred             cCCCcCcccccCCCccccccceehhhhhhccccCCCCC
Q 045449          737 ATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMT  774 (823)
Q Consensus       737 gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~  774 (823)
                      ||+.|+|||++.+..++.++|||||||++||+.++..+
T Consensus       324 GT~~Y~APE~~~~~~~~~~sDvwSlGviL~El~~g~~~  361 (461)
T PHA03211        324 GTVDTNAPEVLAGDPYTPSVDIWSAGLVIFEAAVHTAS  361 (461)
T ss_pred             CCcCCcCHHHHcCCCCCchHHHHHHHHHHHHHHHcCCC
Confidence            99999999999999999999999999999999877654

>cd05617 STKc_aPKC_zeta Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C zeta

Probab=99.85  E-value=5.5e-22  Score=215.66  Aligned_cols=135  Identities=24%  Similarity=0.226  Sum_probs=114.3

Q ss_pred             CeEEEEEEehHhh---HHHHHHHHHHHHHHhhc-chhhHHH---------------------------------------
Q 045449          641 GMEVAVKVFHQQY---ERALKSFEDECEVRKRI-RHRNLVK---------------------------------------  677 (823)
Q Consensus       641 ~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l-~h~niv~---------------------------------------  677 (823)
                      +..||||++....   ....+.+.+|+.++.++ +||+|++                                       
T Consensus        20 ~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~l~~~~~~   99 (327)
T cd05617          20 DQIYAMKVVKKELVHDDEDIDWVQTEKHVFEQASSNPFLVGLHSCFQTTSRLFLVIEYVNGGDLMFHMQRQRKLPEEHAR   99 (327)
T ss_pred             CCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhhcCCCCEeeEEEEEEeCCEEEEEEeCCCCCcHHHHHHHcCCCCHHHHH
Confidence            5789999997653   23456788999999888 6999987                                       


Q ss_pred             -HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccCCCcccccc
Q 045449          678 -IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRG  756 (823)
Q Consensus       678 -~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~  756 (823)
                       ++.|++.+|+|+|+.+|+||||||+||+++.++.+||+|||+++.......  .....+||+.|+|||++.+..++.++
T Consensus       100 ~~~~qi~~al~~lH~~~ivHrDlkp~Nili~~~~~~kl~Dfg~~~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~  177 (327)
T cd05617         100 FYAAEICIALNFLHERGIIYRDLKLDNVLLDADGHIKLTDYGMCKEGLGPGD--TTSTFCGTPNYIAPEILRGEEYGFSV  177 (327)
T ss_pred             HHHHHHHHHHHHHHHCCeeccCCCHHHEEEeCCCCEEEeccccceeccCCCC--ceecccCCcccCCHHHHCCCCCCchh
Confidence             357889999999999999999999999999999999999999975322211  12346799999999999999999999


Q ss_pred             ceehhhhhhccccCCCCCcCC
Q 045449          757 DVCSFGIISGGKETRSMTVGE  777 (823)
Q Consensus       757 Dv~S~Gvv~~~~~~~~~~~~~  777 (823)
                      ||||+||++|++++|..||..
T Consensus       178 DiwslGvil~ell~g~~pf~~  198 (327)
T cd05617         178 DWWALGVLMFEMMAGRSPFDI  198 (327)
T ss_pred             eeehhHHHHHHHHhCCCCCCc
Confidence            999999999999999999954

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, zeta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-zeta plays a critical role in activating the glucose transport response. It is activated by glucose, insulin, and exercise through diverse pathways

>cd05620 STKc_nPKC_delta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta

Probab=99.85  E-value=5.4e-22  Score=214.59  Aligned_cols=136  Identities=26%  Similarity=0.227  Sum_probs=113.1

Q ss_pred             CeEEEEEEehHhh---HHHHHHHHHHHHHHhhc-chhhHHH---------------------------------------
Q 045449          641 GMEVAVKVFHQQY---ERALKSFEDECEVRKRI-RHRNLVK---------------------------------------  677 (823)
Q Consensus       641 ~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l-~h~niv~---------------------------------------  677 (823)
                      |..||||+++...   ....+.+..|.+++.+. +||+|++                                       
T Consensus        20 ~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~E~~~~g~L~~~i~~~~~~~~~~~~   99 (316)
T cd05620          20 GEYFAVKALKKDVVLIDDDVECTMVEKRVLALAWENPFLTHLYCTFQTKEHLFFVMEFLNGGDLMFHIQDKGRFDLYRAT   99 (316)
T ss_pred             CCEEEEEEEEHHHhhhcchHHHHHHHHHHHHhccCCCCccCeeEEEEeCCEEEEEECCCCCCcHHHHHHHcCCCCHHHHH
Confidence            6789999997653   23345677788888754 8999998                                       


Q ss_pred             -HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccCCCcccccc
Q 045449          678 -IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRG  756 (823)
Q Consensus       678 -~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~  756 (823)
                       ++.|++.+|+|+|+.+|+||||||+||+++.++.+||+|||+++.......  ......||+.|+|||++.+..++.++
T Consensus       100 ~~~~qi~~~l~~lH~~~ivHrDlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~  177 (316)
T cd05620         100 FYAAEIVCGLQFLHSKGIIYRDLKLDNVMLDRDGHIKIADFGMCKENVFGDN--RASTFCGTPDYIAPEILQGLKYTFSV  177 (316)
T ss_pred             HHHHHHHHHHHHHHHCCeEecCCCHHHeEECCCCCEEeCccCCCeecccCCC--ceeccCCCcCccCHHHHcCCCCCccc
Confidence             356899999999999999999999999999999999999999875322211  22346799999999999999999999


Q ss_pred             ceehhhhhhccccCCCCCcCCC
Q 045449          757 DVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       757 Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      ||||+||++|++++|..||...
T Consensus       178 DiwslGvil~el~~g~~Pf~~~  199 (316)
T cd05620         178 DWWSFGVLLYEMLIGQSPFHGD  199 (316)
T ss_pred             chhhhHHHHHHHHhCCCCCCCC
Confidence            9999999999999999998654

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. I

>cd05582 STKc_RSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase

Probab=99.85  E-value=6.8e-22  Score=214.17  Aligned_cols=141  Identities=29%  Similarity=0.351  Sum_probs=118.3

Q ss_pred             eeccCCeEEEEEEehHhhH--HHHHHHHHHHHHHhhcchhhHHH------------------------------------
Q 045449          636 IGIGNGMEVAVKVFHQQYE--RALKSFEDECEVRKRIRHRNLVK------------------------------------  677 (823)
Q Consensus       636 lg~g~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~niv~------------------------------------  677 (823)
                      .+...|..||||++.....  .....+..|++++++++||||++                                    
T Consensus        19 ~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~l~~~   98 (318)
T cd05582          19 TGPDAGQLYAMKVLKKATLKVRDRVRTKMERDILAEVNHPFIVKLHYAFQTEGKLYLILDFLRGGDLFTRLSKEVMFTEE   98 (318)
T ss_pred             ccCCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhCCCCCcccEEEEEEcCCEEEEEEcCCCCCcHHHHHHHcCCCCHH
Confidence            3444568899999976432  23456788999999999999998                                    


Q ss_pred             ----HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccCCCccc
Q 045449          678 ----IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVS  753 (823)
Q Consensus       678 ----~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~  753 (823)
                          ++.|++++|+|+|+.+|+||||||+||+++.++.+||+|||+++.......  ......||+.|+|||++.+..++
T Consensus        99 ~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~kL~Dfg~~~~~~~~~~--~~~~~~g~~~y~aPE~~~~~~~~  176 (318)
T cd05582          99 DVKFYLAELALALDHLHSLGIIYRDLKPENILLDEEGHIKLTDFGLSKESIDHEK--KAYSFCGTVEYMAPEVVNRRGHT  176 (318)
T ss_pred             HHHHHHHHHHHHHHHHHHCCEecCCCCHHHeEECCCCcEEEeeccCCcccCCCCC--ceecccCChhhcCHHHHcCCCCC
Confidence                357889999999999999999999999999999999999999986543221  22345799999999999888899


Q ss_pred             cccceehhhhhhccccCCCCCcCCC
Q 045449          754 TRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       754 ~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      .++|||||||++|++.+|+.||...
T Consensus       177 ~~~DiwslG~il~el~tg~~p~~~~  201 (318)
T cd05582         177 QSADWWSFGVLMFEMLTGSLPFQGK  201 (318)
T ss_pred             CccceeccceEeeeeccCCCCCCCC
Confidence            9999999999999999999998654

Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylate

>cd05615 STKc_cPKC_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C alpha

Probab=99.85  E-value=7.9e-22  Score=214.00  Aligned_cols=147  Identities=22%  Similarity=0.197  Sum_probs=119.2

Q ss_pred             CCccceeeccC------------CeEEEEEEehHhh---HHHHHHHHHHHHHHhhcch-hhHHH----------------
Q 045449          630 FSENNLIGIGN------------GMEVAVKVFHQQY---ERALKSFEDECEVRKRIRH-RNLVK----------------  677 (823)
Q Consensus       630 f~~~~~lg~g~------------~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h-~niv~----------------  677 (823)
                      |...+.||.|+            +..||||++....   ....+.+..|++++..+.| ++|++                
T Consensus         2 f~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~E   81 (323)
T cd05615           2 FNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVVIQDDDVECTMVEKRVLALQDKPPFLTQLHSCFQTVDRLYFVME   81 (323)
T ss_pred             ceEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCchhheeeEEecCCEEEEEEc
Confidence            45556777764            5679999997543   2344678889999988864 66665                


Q ss_pred             ------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCcccccc
Q 045449          678 ------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQT  733 (823)
Q Consensus       678 ------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~  733 (823)
                                              ++.|++.+|+|+|+.+|+||||||+||+++.++.+||+|||+++.......  ...
T Consensus        82 y~~~g~L~~~i~~~~~l~~~~~~~i~~qi~~al~~lH~~~ivHrDikp~Nill~~~~~ikL~Dfg~~~~~~~~~~--~~~  159 (323)
T cd05615          82 YVNGGDLMYHIQQVGKFKEPQAVFYAAEISVGLFFLHRRGIIYRDLKLDNVMLDSEGHIKIADFGMCKEHMVDGV--TTR  159 (323)
T ss_pred             CCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHeEECCCCCEEEeccccccccCCCCc--ccc
Confidence                                    356889999999999999999999999999999999999999986432221  123


Q ss_pred             ccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCC
Q 045449          734 QTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       734 ~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      ...||+.|+|||++.+..++.++||||+||+++++++|..||...
T Consensus       160 ~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~elltG~~pf~~~  204 (323)
T cd05615         160 TFCGTPDYIAPEIIAYQPYGKSVDWWAYGVLLYEMLAGQPPFDGE  204 (323)
T ss_pred             CccCCccccCHHHHcCCCCCCccchhhhHHHHHHHHhCCCCCCCC
Confidence            456999999999999889999999999999999999999998764

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, a

>cd06625 STKc_MEKK3_like Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=99.85  E-value=6.1e-22  Score=208.24  Aligned_cols=151  Identities=26%  Similarity=0.312  Sum_probs=122.5

Q ss_pred             ccCCccceeeccC------------CeEEEEEEehHhh-----HHHHHHHHHHHHHHhhcchhhHHH-------------
Q 045449          628 DRFSENNLIGIGN------------GMEVAVKVFHQQY-----ERALKSFEDECEVRKRIRHRNLVK-------------  677 (823)
Q Consensus       628 ~~f~~~~~lg~g~------------~~~vavK~~~~~~-----~~~~~~~~~E~~~l~~l~h~niv~-------------  677 (823)
                      ++|...+.+|.|+            +..||+|.+....     ....+.+.+|++++++++||||++             
T Consensus         2 ~~~~~~~~lg~g~~~~vy~~~~~~~~~~~~lk~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~   81 (263)
T cd06625           2 TNWRRGKLLGQGAFGRVYLCYDVDTGRELAVKQVPFDPDSPETKKEVNALECEIQLLKNLQHERIVQYYGCLRDDETLSI   81 (263)
T ss_pred             CcccccceecCCCceEEEEEEEcCCCcEEEEEEEeecccchhhHHHHHHHHHHHHHHHhCCCCCeeeeEEEEccCCeEEE
Confidence            4566677777764            5678999875332     223467899999999999999998             


Q ss_pred             ---------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccc
Q 045449          678 ---------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLS  730 (823)
Q Consensus       678 ---------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~  730 (823)
                                                 ++.|++.+|+++|+.+++||||||+||+++.++.++|+|||+++.........
T Consensus        82 v~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~i~H~dl~p~nilv~~~~~~~l~dfg~~~~~~~~~~~~  161 (263)
T cd06625          82 FMEYMPGGSVKDQLKAYGALTETVTRKYTRQILEGVEYLHSNMIVHRDIKGANILRDSAGNVKLGDFGASKRLQTICSSG  161 (263)
T ss_pred             EEEECCCCcHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCCEEEeecccceecccccccc
Confidence                                       34678889999999999999999999999999999999999998654322111


Q ss_pred             c-ccccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCC
Q 045449          731 K-QTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       731 ~-~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      . .....|+..|+|||+..+..++.++||||+||++|++++|+.||.+.
T Consensus       162 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~  210 (263)
T cd06625         162 TGMKSVTGTPYWMSPEVISGEGYGRKADVWSVGCTVVEMLTEKPPWAEF  210 (263)
T ss_pred             ccccCCCcCccccCcceeccCCCCchhhhHHHHHHHHHHHhCCCCcccc
Confidence            1 12346788999999999888999999999999999999999998654

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades t

>cd05048 PTKc_Ror Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

Probab=99.85  E-value=4.9e-22  Score=211.52  Aligned_cols=137  Identities=25%  Similarity=0.368  Sum_probs=113.6

Q ss_pred             eEEEEEEehHhh-HHHHHHHHHHHHHHhhcchhhHHH-------------------------------------------
Q 045449          642 MEVAVKVFHQQY-ERALKSFEDECEVRKRIRHRNLVK-------------------------------------------  677 (823)
Q Consensus       642 ~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~-------------------------------------------  677 (823)
                      ..||+|.+.... ....++|.+|++++++++||||++                                           
T Consensus        36 ~~v~~K~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~~~~~~~e~~~~~~L~~~l~~~~~~~~~~~~~~~~  115 (283)
T cd05048          36 TSVAIKTLKENAEPKVQQEFRQEAELMSDLQHPNIVCLLGVCTKEQPTCMLFEYLAHGDLHEFLVRNSPHSDVGAESGDE  115 (283)
T ss_pred             eeEEEEecccCCCHHHHHHHHHHHHHHHhcCCcccceEEEEEcCCCceEEEEecCCCCcHHHHHHhcCCCcccccccccc
Confidence            568999886443 344567999999999999999987                                           


Q ss_pred             -------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcc
Q 045449          678 -------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAP  744 (823)
Q Consensus       678 -------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aP  744 (823)
                                   ++.|++++|+|+|+.+++||||||+||++++++.+||+|||+++...............+++.|+||
T Consensus       116 ~~~~~l~~~~~~~~~~~l~~al~~lH~~~i~H~dlkp~Nil~~~~~~~~L~dfg~~~~~~~~~~~~~~~~~~~~~~y~aP  195 (283)
T cd05048         116 TVKSSLDCSDFLHIAIQIAAGMEYLSSHHFVHRDLAARNCLVGEGLTVKISDFGLSRDIYSADYYRVQSKSLLPVRWMPP  195 (283)
T ss_pred             cccCCCCHHHHHHHHHHHHHHHHHHHhCCeeccccccceEEEcCCCcEEECCCcceeeccccccccccCCCcccccccCH
Confidence                         2356788999999999999999999999999999999999999865443332233345678899999


Q ss_pred             cccCCCccccccceehhhhhhccccC-CCCCcCCC
Q 045449          745 EYGTKGRVSTRGDVCSFGIISGGKET-RSMTVGET  778 (823)
Q Consensus       745 E~~~~~~~~~~~Dv~S~Gvv~~~~~~-~~~~~~~~  778 (823)
                      |++....++.++|||||||++|++++ |..||.+.
T Consensus       196 E~~~~~~~~~~sDv~slG~il~el~~~g~~p~~~~  230 (283)
T cd05048         196 EAILYGKFTTESDIWSFGVVLWEIFSYGLQPYYGF  230 (283)
T ss_pred             HHhccCcCchhhhHHHHHHHHHHHHcCCCCCCCCC
Confidence            99988899999999999999999987 88888654

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimer

>cd05104 PTKc_Kit Catalytic domain of the Protein Tyrosine Kinase, Kit

Probab=99.85  E-value=3.9e-22  Score=220.78  Aligned_cols=99  Identities=24%  Similarity=0.279  Sum_probs=82.5

Q ss_pred             HHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccCCCcccccccee
Q 045449          680 SSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVC  759 (823)
Q Consensus       680 ~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~  759 (823)
                      .|++.+|+|+|+.+|+||||||+||+++.++.+||+|||+++...............++..|+|||++.+..++.++|||
T Consensus       221 ~qi~~~l~~lH~~~ivH~Dlkp~Nill~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDi~  300 (375)
T cd05104         221 YQVAKGMSFLASKNCIHRDLAARNILLTHGRITKICDFGLARDIRNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVW  300 (375)
T ss_pred             HHHHHHHHHHHHCCeeccCCchhhEEEECCCcEEEecCccceeccCcccccccCCCCCCcceeChhHhcCCCCCCCCCHH
Confidence            37888999999999999999999999999999999999999876443322222223456789999999999999999999


Q ss_pred             hhhhhhccccC-CCCCcCCC
Q 045449          760 SFGIISGGKET-RSMTVGET  778 (823)
Q Consensus       760 S~Gvv~~~~~~-~~~~~~~~  778 (823)
                      ||||+++++++ |..||...
T Consensus       301 slG~~l~ellt~g~~p~~~~  320 (375)
T cd05104         301 SYGILLWEIFSLGSSPYPGM  320 (375)
T ss_pred             HHHHHHHHHHhcCCCCCCCC
Confidence            99999999987 78887654

Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem ce

>cd07868 STKc_CDK8 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 8

Probab=99.85  E-value=5.6e-22  Score=214.84  Aligned_cols=136  Identities=24%  Similarity=0.300  Sum_probs=110.4

Q ss_pred             CeEEEEEEehHhhHHHHHHHHHHHHHHhhcchhhHHH-------------------------------------------
Q 045449          641 GMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVK-------------------------------------------  677 (823)
Q Consensus       641 ~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~-------------------------------------------  677 (823)
                      +..||+|.+....  ....+.+|++++++++||||++                                           
T Consensus        28 ~~~~aiK~~~~~~--~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~l  105 (317)
T cd07868          28 DRDYALKQIEGTG--ISMSACREIALLRELKHPNVISLQKVFLSHADRKVWLLFDYAEHDLWHIIKFHRASKANKKPVQL  105 (317)
T ss_pred             CceEEEEEECCCC--CcHHHHHHHHHHHhcCCCCCcceeeeEecCCCcEEEEEEeccCCCHHHHHHhcccccccCCcccC
Confidence            4678999886432  1245788999999999999987                                           


Q ss_pred             -------HHHHHHHHhhhcCCCCEEeccCCCCCEEe----CCCCcEEEeecccccccCCCCc-cccccccccCCCcCccc
Q 045449          678 -------IISSSLEYLHFGHSIPIIHCDLKPSNVLL----DEDMVAHISDFGIAKLLSGEDQ-LSKQTQTLATIGYMAPE  745 (823)
Q Consensus       678 -------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl----~~~~~~kl~DfGla~~~~~~~~-~~~~~~~~gt~~y~aPE  745 (823)
                             ++.|++++|+|+|+.+|+||||||+|||+    +.++.+||+|||+|+....... ........||+.|+|||
T Consensus       106 ~~~~~~~i~~qi~~al~~LH~~~ivHrDlkp~Nil~~~~~~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~t~~y~aPE  185 (317)
T cd07868         106 PRGMVKSLLYQILDGIHYLHANWVLHRDLKPANILVMGEGPERGRVKIADMGFARLFNSPLKPLADLDPVVVTFWYRAPE  185 (317)
T ss_pred             CHHHHHHHHHHHHHHHHHHHhCCEEcCCCCHHHEEEecCCCCcCcEEEeecCceeccCCCCccccccCCccccccccCCH
Confidence                   24688899999999999999999999999    4567999999999987643321 11223467899999999


Q ss_pred             ccCCC-ccccccceehhhhhhccccCCCCCcCCC
Q 045449          746 YGTKG-RVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       746 ~~~~~-~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      ++.+. .++.++||||+||+++++++|..||...
T Consensus       186 ~~~~~~~~~~~~DiwslG~il~el~~g~~~f~~~  219 (317)
T cd07868         186 LLLGARHYTKAIDIWAIGCIFAELLTSEPIFHCR  219 (317)
T ss_pred             HHcCCCCcCchhhHHHHHHHHHHHHhCCCCccCC
Confidence            98764 5899999999999999999999998643

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK8 can act as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA p

>cd05608 STKc_GRK1 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 1

Probab=99.85  E-value=4.4e-22  Score=211.52  Aligned_cols=137  Identities=26%  Similarity=0.266  Sum_probs=116.1

Q ss_pred             CCeEEEEEEehHhh---HHHHHHHHHHHHHHhhcchhhHHH---------------------------------------
Q 045449          640 NGMEVAVKVFHQQY---ERALKSFEDECEVRKRIRHRNLVK---------------------------------------  677 (823)
Q Consensus       640 ~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~---------------------------------------  677 (823)
                      .+..||||.+....   ....+.+..|++++++++|+||++                                       
T Consensus        17 ~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~g~L~~~~~~~~~~~~~l~~   96 (280)
T cd05608          17 TGKLYACKKLNKKRLKKRKGYEGAMVEKRILAKVHSRFIVSLAYAFQTKTDLCLVMTIMNGGDLRYHIYNVDEENPGFPE   96 (280)
T ss_pred             CCcEEEEEeeeHHHHhhhHHHHHHHHHHHHHHhCCCCcEeeeeEEEcCCCeEEEEEeCCCCCCHHHHHHhccccCCCCCH
Confidence            46789999986543   223467789999999999999997                                       


Q ss_pred             -----HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccCCCcc
Q 045449          678 -----IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRV  752 (823)
Q Consensus       678 -----~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~  752 (823)
                           ++.|++.+|+|+|+.+|+||||||+||+++.++.+||+|||+++.......  ......||+.|+|||++.+..+
T Consensus        97 ~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~~~~--~~~~~~g~~~y~aPE~~~~~~~  174 (280)
T cd05608          97 PRACFYTAQIISGLEHLHQRRIIYRDLKPENVLLDNDGNVRISDLGLAVELKDGQS--KTKGYAGTPGFMAPELLQGEEY  174 (280)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCCEEEeeCccceecCCCCc--cccccCCCcCccCHHHhcCCCC
Confidence                 356889999999999999999999999999999999999999987643322  1234578999999999999999


Q ss_pred             ccccceehhhhhhccccCCCCCcCCC
Q 045449          753 STRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       753 ~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      +.++|||||||++|++.+|+.||...
T Consensus       175 ~~~~DvwslG~il~el~~g~~pf~~~  200 (280)
T cd05608         175 DFSVDYFALGVTLYEMIAARGPFRAR  200 (280)
T ss_pred             CccccHHHHHHHHHHHHhCCCCCCCC
Confidence            99999999999999999999998653

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual g

>cd05619 STKc_nPKC_theta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta

Probab=99.85  E-value=9.1e-22  Score=212.77  Aligned_cols=136  Identities=26%  Similarity=0.235  Sum_probs=113.3

Q ss_pred             CeEEEEEEehHhh---HHHHHHHHHHHHHHhhc-chhhHHH---------------------------------------
Q 045449          641 GMEVAVKVFHQQY---ERALKSFEDECEVRKRI-RHRNLVK---------------------------------------  677 (823)
Q Consensus       641 ~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l-~h~niv~---------------------------------------  677 (823)
                      +..||||+++...   ....+.+..|..++... +||||++                                       
T Consensus        20 ~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~hp~iv~~~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~   99 (316)
T cd05619          20 NQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHLYCTFQTKENLFFVMEYLNGGDLMFHIQSCHKFDLPRAT   99 (316)
T ss_pred             CCEEEEEEEEHHHhhhcchHHHHHHHHHHHHhccCCCcCcceEEEEEeCCEEEEEEeCCCCCcHHHHHHHcCCCCHHHHH
Confidence            5789999997653   23345677788888764 9999998                                       


Q ss_pred             -HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccCCCcccccc
Q 045449          678 -IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRG  756 (823)
Q Consensus       678 -~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~  756 (823)
                       ++.|++.+|+|+|+.+|+||||||+||+++.++.+||+|||+++.......  ......||+.|+|||++.+..++.++
T Consensus       100 ~~~~qi~~al~~LH~~~ivHrdikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~  177 (316)
T cd05619         100 FYAAEIICGLQFLHSKGIVYRDLKLDNILLDTDGHIKIADFGMCKENMLGDA--KTCTFCGTPDYIAPEILLGQKYNTSV  177 (316)
T ss_pred             HHHHHHHHHHHHHHhCCeEeCCCCHHHEEECCCCCEEEccCCcceECCCCCC--ceeeecCCccccCHHHHcCCCCCchh
Confidence             357889999999999999999999999999999999999999875322211  22345799999999999988999999


Q ss_pred             ceehhhhhhccccCCCCCcCCC
Q 045449          757 DVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       757 Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      ||||+||++|++++|..||...
T Consensus       178 DvwslG~il~el~~G~~pf~~~  199 (316)
T cd05619         178 DWWSFGVLLYEMLIGQSPFHGH  199 (316)
T ss_pred             hhhhHHHHHHHHHhCCCCCCCC
Confidence            9999999999999999998654

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in

>cd06649 PKc_MEK2 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2

Probab=99.85  E-value=1e-21  Score=213.97  Aligned_cols=146  Identities=24%  Similarity=0.327  Sum_probs=122.1

Q ss_pred             ccCCccceeeccC------------CeEEEEEEehHhh-HHHHHHHHHHHHHHhhcchhhHHH-----------------
Q 045449          628 DRFSENNLIGIGN------------GMEVAVKVFHQQY-ERALKSFEDECEVRKRIRHRNLVK-----------------  677 (823)
Q Consensus       628 ~~f~~~~~lg~g~------------~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~-----------------  677 (823)
                      ++|+..+.||.|+            +..||+|++.... ....++|.+|++++++++||||++                 
T Consensus         5 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~   84 (331)
T cd06649           5 DDFERISELGAGNGGVVTKVQHKPSGLIMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICMEH   84 (331)
T ss_pred             ccceEEEeecCCCCEEEEEEEECCCCcEEEEEEeecccCHHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEEEeec
Confidence            5677777788775            5668999887543 344578999999999999999998                 


Q ss_pred             -----------------------HHHHHHHHhhhcCCC-CEEeccCCCCCEEeCCCCcEEEeecccccccCCCCcccccc
Q 045449          678 -----------------------IISSSLEYLHFGHSI-PIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQT  733 (823)
Q Consensus       678 -----------------------~~~~~l~~L~~~h~~-~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~  733 (823)
                                             ++.|++.+|.|+|+. +|+||||||+||+++.++.+||+|||+++......    ..
T Consensus        85 ~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~----~~  160 (331)
T cd06649          85 MDGGSLDQVLKEAKRIPEEILGKVSIAVLRGLAYLREKHQIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSM----AN  160 (331)
T ss_pred             CCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhhcCCEEcCCCChhhEEEcCCCcEEEccCcccccccccc----cc
Confidence                                   245778888889975 69999999999999999999999999998653321    23


Q ss_pred             ccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCC
Q 045449          734 QTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGE  777 (823)
Q Consensus       734 ~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~  777 (823)
                      ...||+.|+|||++.+..++.++|||||||++|++++|+.||..
T Consensus       161 ~~~g~~~y~aPE~~~~~~~~~~~DiwslG~il~el~tg~~p~~~  204 (331)
T cd06649         161 SFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVELAIGRYPIPP  204 (331)
T ss_pred             cCCCCcCcCCHhHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCC
Confidence            45799999999999988999999999999999999999999864

Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downst

>KOG1006 consensus Mitogen-activated protein kinase (MAPK) kinase MKK4 [Signal transduction mechanisms]

Probab=99.85  E-value=3.2e-22  Score=194.01  Aligned_cols=133  Identities=32%  Similarity=0.366  Sum_probs=106.5

Q ss_pred             CeEEEEEEehHhh-HHHHHHHHHHHHHHhhc-chhhHHHHH---------------------------------------
Q 045449          641 GMEVAVKVFHQQY-ERALKSFEDECEVRKRI-RHRNLVKII---------------------------------------  679 (823)
Q Consensus       641 ~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l-~h~niv~~~---------------------------------------  679 (823)
                      |+..|||+++... ++..+++..|.++..+- ..||||++.                                       
T Consensus        89 g~~mAVKrIr~~n~~keq~rll~e~d~~mks~~cp~IVkfyGa~F~EGdcWiCMELMd~SlDklYk~vy~vq~~~ipE~I  168 (361)
T KOG1006|consen   89 GKLMAVKRIRSNNIEKEQKRLLMEHDTVMKSSNCPNIVKFYGALFSEGDCWICMELMDISLDKLYKRVYSVQKSRIPENI  168 (361)
T ss_pred             CcEEEEEEeeeccchHHHHHHHHHHHHHHhhcCCcHHHHHhhhhhcCCceeeeHHHHhhhHHHHHHHHHHHHhccCcHhh
Confidence            7889999998554 45667899998876555 789999931                                       


Q ss_pred             --------HHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccCC--
Q 045449          680 --------SSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTK--  749 (823)
Q Consensus       680 --------~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~--  749 (823)
                              ..+++||..-  ..|+|||+||+|||+|..|.+||||||.+..+...-   ..+.-+|-..|||||.+..  
T Consensus       169 lg~ItvatV~AL~yLK~~--lkiIHRDvKPSNILldr~G~vKLCDFGIcGqLv~Si---AkT~daGCrpYmAPERi~p~~  243 (361)
T KOG1006|consen  169 LGHITVATVDALDYLKEE--LKIIHRDVKPSNILLDRHGDVKLCDFGICGQLVDSI---AKTVDAGCRPYMAPERIDPSD  243 (361)
T ss_pred             hhheeeeehhHHHHHHHH--hhhhhccCChhheEEecCCCEeeecccchHhHHHHH---HhhhccCCccccChhccCCcc
Confidence                    2456666543  469999999999999999999999999998764332   2344578899999998753  


Q ss_pred             CccccccceehhhhhhccccCCCCCcCCC
Q 045449          750 GRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       750 ~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      ..|+.++||||+|+.++|..||..|+...
T Consensus       244 ~gyDiRSDvWSLGITL~EvAtG~fPyr~w  272 (361)
T KOG1006|consen  244 KGYDIRSDVWSLGITLYEVATGNFPYRKW  272 (361)
T ss_pred             CCcchhhhhhhhcceEeeeecCCCCcchH
Confidence            35999999999999999999999998764

>cd05093 PTKc_TrkB Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B

Probab=99.85  E-value=6.7e-22  Score=211.09  Aligned_cols=139  Identities=26%  Similarity=0.348  Sum_probs=116.2

Q ss_pred             CeEEEEEEehHhhHHHHHHHHHHHHHHhhcchhhHHH-------------------------------------------
Q 045449          641 GMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVK-------------------------------------------  677 (823)
Q Consensus       641 ~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~-------------------------------------------  677 (823)
                      +..||+|.+........+.|.+|++++++++||||++                                           
T Consensus        35 ~~~~~ik~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~  114 (288)
T cd05093          35 KILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVEGDPLIMVFEYMKHGDLNKFLRAHGPDAVLMAEGNRP  114 (288)
T ss_pred             ceEEEEEecCCcCHHHHHHHHHHHHHHHhCCCCCcceEEEEEecCCccEEEEEcCCCCCHHHHHHHcCCccccccccCCC
Confidence            3558999987666666678999999999999999998                                           


Q ss_pred             ----------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCccccc
Q 045449          678 ----------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYG  747 (823)
Q Consensus       678 ----------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~  747 (823)
                                ++.|++.+|.|+|+.+++||||||+||++++++.+||+|||+++...............++..|+|||++
T Consensus       115 ~~l~~~~~~~~~~ql~~aL~~lH~~~i~H~dlkp~Nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  194 (288)
T cd05093         115 AELTQSQMLHIAQQIAAGMVYLASQHFVHRDLATRNCLVGENLLVKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESI  194 (288)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhCCeeecccCcceEEEccCCcEEeccCCccccccCCceeecCCCCCccccccCHHHh
Confidence                      2357888899999999999999999999999999999999999876443322223334567899999999


Q ss_pred             CCCccccccceehhhhhhccccC-CCCCcCCCc
Q 045449          748 TKGRVSTRGDVCSFGIISGGKET-RSMTVGETC  779 (823)
Q Consensus       748 ~~~~~~~~~Dv~S~Gvv~~~~~~-~~~~~~~~~  779 (823)
                      .+..++.++|||||||+++++.+ |..||....
T Consensus       195 ~~~~~~~~sDiwslG~il~~l~t~g~~p~~~~~  227 (288)
T cd05093         195 MYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLS  227 (288)
T ss_pred             ccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCC
Confidence            88889999999999999999998 888886643

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly

>cd05605 STKc_GRK4_like Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases

Probab=99.85  E-value=1.3e-21  Score=208.47  Aligned_cols=146  Identities=24%  Similarity=0.290  Sum_probs=120.8

Q ss_pred             CCccceeeccC------------CeEEEEEEehHhh---HHHHHHHHHHHHHHhhcchhhHHH-----------------
Q 045449          630 FSENNLIGIGN------------GMEVAVKVFHQQY---ERALKSFEDECEVRKRIRHRNLVK-----------------  677 (823)
Q Consensus       630 f~~~~~lg~g~------------~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~-----------------  677 (823)
                      |+..+.||.|+            +..||||++....   ......+.+|++++++++||||++                 
T Consensus         2 y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~   81 (285)
T cd05605           2 FRHYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVSLAYAYETKDALCLVLTL   81 (285)
T ss_pred             ceEEEEEecCCCeEEEEEEEcCCCceEEEEEEehhhhhhhhhHHHHHHHHHHHHhcCCCCEeeeeeeecCCCeEEEEEec
Confidence            44556666664            5679999986543   223456789999999999999997                 


Q ss_pred             -------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccc
Q 045449          678 -------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQ  732 (823)
Q Consensus       678 -------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~  732 (823)
                                               ++.|++.+|.|+|+.+++||||||+||++++++.++|+|||+++.......   .
T Consensus        82 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~Nil~~~~~~~~l~Dfg~~~~~~~~~~---~  158 (285)
T cd05605          82 MNGGDLKFHIYNMGNPGFDEERAVFYAAEITCGLEDLHRERIVYRDLKPENILLDDYGHIRISDLGLAVEIPEGET---I  158 (285)
T ss_pred             cCCCcHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHHHHCCcEecCCCHHHEEECCCCCEEEeeCCCceecCCCCc---c
Confidence                                     356888999999999999999999999999999999999999987543221   2


Q ss_pred             cccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCC
Q 045449          733 TQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       733 ~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      ....|++.|+|||++.+..++.++||||+||++|++++|..||.+.
T Consensus       159 ~~~~~~~~y~aPE~~~~~~~~~~~Diws~G~~l~el~~g~~pf~~~  204 (285)
T cd05605         159 RGRVGTVGYMAPEVVKNERYTFSPDWWGLGCLIYEMIEGKSPFRQR  204 (285)
T ss_pred             ccccCCCCccCcHHhcCCCCCccccchhHHHHHHHHHHCCCCCCCC
Confidence            2357899999999998888999999999999999999999999764

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5,

>cd06650 PKc_MEK1 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1

Probab=99.85  E-value=1.5e-21  Score=212.66  Aligned_cols=147  Identities=23%  Similarity=0.327  Sum_probs=121.0

Q ss_pred             ccCCccceeeccC------------CeEEEEEEehHhh-HHHHHHHHHHHHHHhhcchhhHHH-----------------
Q 045449          628 DRFSENNLIGIGN------------GMEVAVKVFHQQY-ERALKSFEDECEVRKRIRHRNLVK-----------------  677 (823)
Q Consensus       628 ~~f~~~~~lg~g~------------~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~-----------------  677 (823)
                      ++|+..+.||.|+            +..||+|++.... ....+.+.+|++++++++|+||++                 
T Consensus         5 ~~y~~~~~lg~g~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~   84 (333)
T cd06650           5 DDFEKISELGAGNGGVVFKVSHKPSGLIMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICMEH   84 (333)
T ss_pred             hhhheeccccCCCCEEEEEEEECCCCcEEEEEEeecccCHHHHHHHHHHHHHHHHCCCCcccceeEEEEECCEEEEEEec
Confidence            4666667777764            5668999886542 344567999999999999999999                 


Q ss_pred             -----------------------HHHHHHHHhhhcCC-CCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCcccccc
Q 045449          678 -----------------------IISSSLEYLHFGHS-IPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQT  733 (823)
Q Consensus       678 -----------------------~~~~~l~~L~~~h~-~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~  733 (823)
                                             ++.+++.+|.|+|+ .+|+||||||+||+++.++.+||+|||+++......    ..
T Consensus        85 ~~~~~L~~~l~~~~~~~~~~~~~~~~~l~~~l~~lH~~~~ivH~dlkp~Nili~~~~~~kL~Dfg~~~~~~~~~----~~  160 (333)
T cd06650          85 MDGGSLDQVLKKAGRIPEQILGKVSIAVIKGLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSM----AN  160 (333)
T ss_pred             CCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhcCCEEecCCChhhEEEcCCCCEEEeeCCcchhhhhhc----cc
Confidence                                   24577888888886 479999999999999999999999999997653221    22


Q ss_pred             ccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCC
Q 045449          734 QTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       734 ~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      ...||..|+|||++.+..++.++|||||||++|++.+|..||...
T Consensus       161 ~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~~l~~g~~p~~~~  205 (333)
T cd06650         161 SFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAIGRYPIPPP  205 (333)
T ss_pred             cCCCCccccCHHHhcCCCCCcHHHHHHHHHHHHHHHHCCCCCCCc
Confidence            356899999999999888999999999999999999999998653

Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downst

>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]

Probab=99.85  E-value=3.3e-22  Score=229.57  Aligned_cols=94  Identities=32%  Similarity=0.396  Sum_probs=79.3

Q ss_pred             HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCC----------------CCccccccccccCCCc
Q 045449          678 IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSG----------------EDQLSKQTQTLATIGY  741 (823)
Q Consensus       678 ~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~----------------~~~~~~~~~~~gt~~y  741 (823)
                      ++++++++|.|+|++|||||||||.||++|.+..+||.|||+|+....                .......+..+||.-|
T Consensus       702 LFreIlEGLaYIH~~giIHRDLKP~NIFLd~~~~VKIGDFGLAt~~~~~~~~~d~~~~~~~~~~g~~~~~~Ts~VGTalY  781 (1351)
T KOG1035|consen  702 LFREILEGLAYIHDQGIIHRDLKPRNIFLDSRNSVKIGDFGLATDLKENLESIDQDLSFSTNRAGSNDGDLTSQVGTALY  781 (1351)
T ss_pred             HHHHHHHHHHHHHhCceeeccCCcceeEEcCCCCeeecccccchhhhhhhhhHhhccCccccccCCCCcccccccceeee
Confidence            368999999999999999999999999999999999999999987210                0111234567999999


Q ss_pred             CcccccCCCc---cccccceehhhhhhccccCC
Q 045449          742 MAPEYGTKGR---VSTRGDVCSFGIISGGKETR  771 (823)
Q Consensus       742 ~aPE~~~~~~---~~~~~Dv~S~Gvv~~~~~~~  771 (823)
                      +|||++.+..   |+.|+|+||+|||++||+.-
T Consensus       782 vAPEll~~~~~~~Yn~KiDmYSLGIVlFEM~yP  814 (1351)
T KOG1035|consen  782 VAPELLSDTSSNKYNSKIDMYSLGIVLFEMLYP  814 (1351)
T ss_pred             ecHHHhcccccccccchhhhHHHHHHHHHHhcc
Confidence            9999987654   99999999999999998643

>PTZ00284 protein kinase; Provisional

Probab=99.85  E-value=5.6e-22  Score=226.18  Aligned_cols=152  Identities=24%  Similarity=0.277  Sum_probs=119.3

Q ss_pred             HHHHHHhccCCccceeeccC------------CeEEEEEEehHhhHHHHHHHHHHHHHHhhcchhh------HHH-----
Q 045449          621 HELLRATDRFSENNLIGIGN------------GMEVAVKVFHQQYERALKSFEDECEVRKRIRHRN------LVK-----  677 (823)
Q Consensus       621 ~~l~~at~~f~~~~~lg~g~------------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~n------iv~-----  677 (823)
                      +++...+++|...+.||+|+            +..||||+++... ...+.+..|++++.+++|.+      +++     
T Consensus       122 ~~~~~~~~~y~i~~~lG~G~fg~V~~a~~~~~~~~vAvK~i~~~~-~~~~~~~~e~~~l~~l~~~~~~~~~~i~~i~~~~  200 (467)
T PTZ00284        122 EDIDVSTQRFKILSLLGEGTFGKVVEAWDRKRKEYCAVKIVRNVP-KYTRDAKIEIQFMEKVRQADPADRFPLMKIQRYF  200 (467)
T ss_pred             CccccCCCcEEEEEEEEeccCEEEEEEEEcCCCeEEEEEEEecch-hhHHHHHHHHHHHHHHhhcCcccCcceeeeEEEE
Confidence            34445678899999999986            5569999986432 23345666777777765544      222     


Q ss_pred             -----------------------------------HHHHHHHHhhhcCC-CCEEeccCCCCCEEeCCCC-----------
Q 045449          678 -----------------------------------IISSSLEYLHFGHS-IPIIHCDLKPSNVLLDEDM-----------  710 (823)
Q Consensus       678 -----------------------------------~~~~~l~~L~~~h~-~~ivHrdlk~~NiLl~~~~-----------  710 (823)
                                                         ++.|++.+|+|+|+ .+||||||||+|||++.++           
T Consensus       201 ~~~~~~~~iv~~~~g~~l~~~l~~~~~l~~~~~~~i~~qi~~aL~yLH~~~gIiHrDlKP~NILl~~~~~~~~~~~~~~~  280 (467)
T PTZ00284        201 QNETGHMCIVMPKYGPCLLDWIMKHGPFSHRHLAQIIFQTGVALDYFHTELHLMHTDLKPENILMETSDTVVDPVTNRAL  280 (467)
T ss_pred             EcCCceEEEEEeccCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhcCCeecCCCCHHHEEEecCCccccccccccc
Confidence                                               46788999999997 6999999999999998655           


Q ss_pred             -----cEEEeecccccccCCCCccccccccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCC
Q 045449          711 -----VAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       711 -----~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                           .+||+|||.+.....     .....+||+.|+|||++.+..|+.++|||||||++||+++|+.||...
T Consensus       281 ~~~~~~vkl~DfG~~~~~~~-----~~~~~~gt~~Y~APE~~~~~~~~~~~DiwSlGvil~elltG~~pf~~~  348 (467)
T PTZ00284        281 PPDPCRVRICDLGGCCDERH-----SRTAIVSTRHYRSPEVVLGLGWMYSTDMWSMGCIIYELYTGKLLYDTH  348 (467)
T ss_pred             CCCCceEEECCCCccccCcc-----ccccccCCccccCcHHhhcCCCCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence                 499999998864321     123467999999999999999999999999999999999999999653

>KOG4645 consensus MAPKKK (MAP kinase kinase kinase) SSK2 and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.84  E-value=1.7e-22  Score=232.93  Aligned_cols=155  Identities=31%  Similarity=0.380  Sum_probs=125.5

Q ss_pred             HhccCCccceeeccC------------CeEEEEEEehHhh--HHHHHHHHHHHHHHhhcchhhHHH--------------
Q 045449          626 ATDRFSENNLIGIGN------------GMEVAVKVFHQQY--ERALKSFEDECEVRKRIRHRNLVK--------------  677 (823)
Q Consensus       626 at~~f~~~~~lg~g~------------~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~--------------  677 (823)
                      .+-++....+||.|.            |...|||-+.-+.  .+..+...+|..++..+.|||+|+              
T Consensus      1233 V~~rWqrg~~Ig~G~fG~VYtavN~~tGellAvKEI~iq~~~~k~~~~i~eEm~vlE~lnHpNlV~YyGVEvHRekv~IF 1312 (1509)
T KOG4645|consen 1233 VTFRWQRGNFIGGGTFGKVYTAVNLDTGELLAVKEIKIQDSDHKTFKLIAEEMKVLEGLNHPNLVRYYGVEVHREKVYIF 1312 (1509)
T ss_pred             ceeeeccccccCCcceeeeEEeecCCccchhhhhhhhcCccccccCcchHHHHHHHHhccCccccccCceeecHHHHHHH
Confidence            344666677888774            5557888665332  445567889999999999999998              


Q ss_pred             --------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCc--c
Q 045449          678 --------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQ--L  729 (823)
Q Consensus       678 --------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~--~  729 (823)
                                                +.+|.++++.|+|+.|||||||||+||+++.+|.+|++|||.|..+....+  .
T Consensus      1313 MEyC~~GsLa~ll~~gri~dE~vt~vyt~qll~gla~LH~~gIVHRDIK~aNI~Ld~~g~iK~~DFGsa~ki~~~~~~~~ 1392 (1509)
T KOG4645|consen 1313 MEYCEGGSLASLLEHGRIEDEMVTRVYTKQLLEGLAYLHEHGIVHRDIKPANILLDFNGLIKYGDFGSAVKIKNNAQTMP 1392 (1509)
T ss_pred             HHHhccCcHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHhcCceecCCCccceeeecCCcEEeecccceeEecCchhcCC
Confidence                                      246889999999999999999999999999999999999999988755421  1


Q ss_pred             ccccccccCCCcCcccccCCCc---cccccceehhhhhhccccCCCCCcCCCcc
Q 045449          730 SKQTQTLATIGYMAPEYGTKGR---VSTRGDVCSFGIISGGKETRSMTVGETCT  780 (823)
Q Consensus       730 ~~~~~~~gt~~y~aPE~~~~~~---~~~~~Dv~S~Gvv~~~~~~~~~~~~~~~~  780 (823)
                      ......+||+.|||||++.+..   -..++||||+|||..||.||+.||.+...
T Consensus      1393 ~el~~~~GT~~YMAPEvit~t~~kG~~~A~DiWslGCVVlEM~tGkrPW~~~dn 1446 (1509)
T KOG4645|consen 1393 GELQSMMGTPMYMAPEVITGTKGKGHGGAADIWSLGCVVLEMATGKRPWAELDN 1446 (1509)
T ss_pred             HHHHhhcCCchhcCchhhcccccCCCCcchhhhcccceEEEeecCCCchhhccc
Confidence            1223568999999999987654   46779999999999999999999987643

>cd05586 STKc_Sck1_like Catalytic domain of Suppressor of loss of cAMP-dependent protein kinase-like Protein Serine/Threonine Kinases

Probab=99.84  E-value=2e-21  Score=211.75  Aligned_cols=136  Identities=22%  Similarity=0.225  Sum_probs=110.1

Q ss_pred             CeEEEEEEehHhh---HHHHHHHHHHHHHHhhc---chhhHHH-------------------------------------
Q 045449          641 GMEVAVKVFHQQY---ERALKSFEDECEVRKRI---RHRNLVK-------------------------------------  677 (823)
Q Consensus       641 ~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l---~h~niv~-------------------------------------  677 (823)
                      +..||||++....   ......+..|..++.+.   +||+|++                                     
T Consensus        18 ~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~p~i~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~   97 (330)
T cd05586          18 RRIYAMKVLSKKEIVAKKEVAHTIGERNILVRTLLDESPFIVGLKFSFQTDSDLYLVTDYMSGGELFWHLQKEGRFSEDR   97 (330)
T ss_pred             CCEEEEEEEeHHHHhhhhHHHHHHHHHHHHHHhccCCCCcCcceEEEEecCCeEEEEEcCCCCChHHHHHHhcCCCCHHH
Confidence            6789999996543   22334566677777665   6999987                                     


Q ss_pred             ---HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccCCC-ccc
Q 045449          678 ---IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKG-RVS  753 (823)
Q Consensus       678 ---~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~  753 (823)
                         ++.|++++|+|+|+.+|+||||||+|||++.++.+||+|||+++.......  .....+||+.|+|||++.+. .++
T Consensus        98 ~~~~~~qil~al~~LH~~~ivHrDlkp~Nili~~~~~~kl~Dfg~a~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~  175 (330)
T cd05586          98 AKFYIAELVLALEHLHKYDIVYRDLKPENILLDATGHIALCDFGLSKANLTDNK--TTNTFCGTTEYLAPEVLLDEKGYT  175 (330)
T ss_pred             HHHHHHHHHHHHHHHHHCCeEeccCCHHHeEECCCCCEEEecCCcCcCCCCCCC--CccCccCCccccCHHHHcCCCCCC
Confidence               357899999999999999999999999999999999999999976432221  12345799999999998754 479


Q ss_pred             cccceehhhhhhccccCCCCCcCCC
Q 045449          754 TRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       754 ~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      .++||||+||++|+|++|..||...
T Consensus       176 ~~~DvwslGvil~elltG~~Pf~~~  200 (330)
T cd05586         176 KHVDFWSLGVLVFEMCCGWSPFYAE  200 (330)
T ss_pred             CccceeccccEEEEeccCCCCCCCC
Confidence            9999999999999999999998654

Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of

>KOG0574 consensus STE20-like serine/threonine kinase MST [Signal transduction mechanisms]

Probab=99.84  E-value=1.8e-22  Score=198.21  Aligned_cols=135  Identities=26%  Similarity=0.398  Sum_probs=116.1

Q ss_pred             CeEEEEEEehHhhHHHHHHHHHHHHHHhhcchhhHHHH-----------------------------------------H
Q 045449          641 GMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVKI-----------------------------------------I  679 (823)
Q Consensus       641 ~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~-----------------------------------------~  679 (823)
                      |+.||||.+..+  ...+++..|+.++.+++.|++|++                                         +
T Consensus        58 G~v~AIK~VPV~--sDLQEIIKEISIMQQC~S~yVVKYYGSYFK~sDLWIVMEYCGAGSiSDI~R~R~K~L~E~EIs~iL  135 (502)
T KOG0574|consen   58 GHVLAIKKVPVD--TDLQEIIKEISIMQQCKSKYVVKYYGSYFKHSDLWIVMEYCGAGSISDIMRARRKPLSEQEISAVL  135 (502)
T ss_pred             CcEEEEEecCcc--chHHHHHHHHHHHHHcCCchhhhhhhhhccCCceEeehhhcCCCcHHHHHHHhcCCccHHHHHHHH
Confidence            789999998655  345789999999999999999993                                         2


Q ss_pred             HHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccCCCcccccccee
Q 045449          680 SSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVC  759 (823)
Q Consensus       680 ~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~  759 (823)
                      ...+.+|+|+|...-+|||||..|||+..+|++|++|||+|..+..  +.....+++|||.|||||++..-.|+.++|||
T Consensus       136 ~~TLKGL~YLH~~~KIHRDIKAGNILLNT~G~AKLADFGVAGQLTD--TMAKRNTVIGTPFWMAPEVI~EIGY~~~ADIW  213 (502)
T KOG0574|consen  136 RDTLKGLQYLHDLKKIHRDIKAGNILLNTDGIAKLADFGVAGQLTD--TMAKRNTVIGTPFWMAPEVIEEIGYDTKADIW  213 (502)
T ss_pred             HHHHhHHHHHHHHHHHHhhcccccEEEcccchhhhhhccccchhhh--hHHhhCccccCcccccHHHHHHhccchhhhHh
Confidence            3445667777777889999999999999999999999999987642  33445678999999999999999999999999


Q ss_pred             hhhhhhccccCCCCCcCCCc
Q 045449          760 SFGIISGGKETRSMTVGETC  779 (823)
Q Consensus       760 S~Gvv~~~~~~~~~~~~~~~  779 (823)
                      |+|+..-||..|+.|+.++.
T Consensus       214 SLGITaIEMAEG~PPYsDIH  233 (502)
T KOG0574|consen  214 SLGITAIEMAEGRPPYSDIH  233 (502)
T ss_pred             hhcchhhhhhcCCCCccccc
Confidence            99999999999999998763

>cd05049 PTKc_Trk Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

Probab=99.84  E-value=1.1e-21  Score=208.47  Aligned_cols=138  Identities=28%  Similarity=0.331  Sum_probs=114.4

Q ss_pred             CeEEEEEEehHhhH-HHHHHHHHHHHHHhhcchhhHHHH-----------------------------------------
Q 045449          641 GMEVAVKVFHQQYE-RALKSFEDECEVRKRIRHRNLVKI-----------------------------------------  678 (823)
Q Consensus       641 ~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~~-----------------------------------------  678 (823)
                      +..||||++..... ...+.|.+|++++++++|+||+++                                         
T Consensus        35 ~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~  114 (280)
T cd05049          35 KELVAVKTLKETASNDARKDFEREAELLTNFQHENIVKFYGVCTEGDPPIMVFEYMEHGDLNKFLRSHGPDAAFLKSPDS  114 (280)
T ss_pred             cceEEEEeecccCCHHHHHHHHHHHHHHHhcCCCCchheeeEEecCCCeEEEEecCCCCCHHHHHHhcCCchhhhccccc
Confidence            36799999875443 355789999999999999998871                                         


Q ss_pred             -------------HHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCccc
Q 045449          679 -------------ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPE  745 (823)
Q Consensus       679 -------------~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE  745 (823)
                                   +.|++.++.++|+.+++||||||+||+++.++.+||+|||+++...............+++.|+|||
T Consensus       115 ~~~~l~~~~~~~~~~~i~~~l~~lH~~~i~h~dlkp~nili~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~y~aPE  194 (280)
T cd05049         115 PMGELTLSQLLQIAVQIASGMVYLASQHFVHRDLATRNCLVGYDLVVKIGDFGMSRDVYTTDYYRVGGHTMLPIRWMPPE  194 (280)
T ss_pred             ccccccHHHHHHHHHHHHHHHHHHhhCCeeccccccceEEEcCCCeEEECCcccceecccCcceecCCCCcccceecChh
Confidence                         4577888999999999999999999999999999999999998654333222223445678999999


Q ss_pred             ccCCCccccccceehhhhhhccccC-CCCCcCCC
Q 045449          746 YGTKGRVSTRGDVCSFGIISGGKET-RSMTVGET  778 (823)
Q Consensus       746 ~~~~~~~~~~~Dv~S~Gvv~~~~~~-~~~~~~~~  778 (823)
                      ++.++.++.++||||+||+++++++ |..||.+.
T Consensus       195 ~~~~~~~~~~~Di~slG~il~e~~~~g~~p~~~~  228 (280)
T cd05049         195 SIMYRKFTTESDVWSFGVVLWEIFTYGKQPWYGL  228 (280)
T ss_pred             hhccCCcchhhhHHHHHHHHHHHHhcCCCCCCCC
Confidence            9999999999999999999999997 99887653

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalyt

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.84  E-value=3.6e-21  Score=224.52  Aligned_cols=223  Identities=25%  Similarity=0.458  Sum_probs=117.4

Q ss_pred             EEEEEcCCCCCccccCcccCCCCCCcEEEccCCCCCCCCCCCCCCCCCCCEEECCCCcCcCCCchhhhcCCCCcEEeccc
Q 045449           54 VIGLNISSFNLQGTITPQLGNLSSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQLFGSLSSFIFNMSSMTTIDLSI  133 (823)
Q Consensus        54 v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~  133 (823)
                      .+.|++++++++ .+|..+.  ++|+.|+|++|+|+ .+|..+.  ++|++|+|++|+|+ .+|..+.  .+|+.|+|++
T Consensus       180 ~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~  250 (754)
T PRK15370        180 KTELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSI  250 (754)
T ss_pred             ceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcC
Confidence            467778777777 3555443  46788888888887 4555544  47888888888877 3455443  4678888888


Q ss_pred             ccccCccCccccCCCCCCccccccceeeeccceeeccCccccccchhhHHHHHhhcCCCcccCCcccCCcchhhhhcccc
Q 045449          134 NRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEIGNLTKLKEIISTITNSTVCEIPREIGNLPYLARLALAT  213 (823)
Q Consensus       134 N~l~~~~p~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~~l~~n~~~~~ip~~l~~l~~L~~L~Ls~  213 (823)
                      |+++ .+|..+         .++|+.|+|++|+|+ .+|..+.  ++|+.|. +++|++. .+|..+.  ++|+.|++++
T Consensus       251 N~L~-~LP~~l---------~s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~-Ls~N~Lt-~LP~~lp--~sL~~L~Ls~  313 (754)
T PRK15370        251 NRIT-ELPERL---------PSALQSLDLFHNKIS-CLPENLP--EELRYLS-VYDNSIR-TLPAHLP--SGITHLNVQS  313 (754)
T ss_pred             CccC-cCChhH---------hCCCCEEECcCCccC-ccccccC--CCCcEEE-CCCCccc-cCcccch--hhHHHHHhcC
Confidence            8876 455543         136788888888777 4565442  2333332 3344333 2333322  2445555555


Q ss_pred             ccccCCccccccCCCCCcEEEccCCcccccCCcccccCCCCccEEEeeccccccccCccccCCCCCCeEEeecccccccC
Q 045449          214 NNLVGVVPVTIFNMSALKEISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSITNSSKLSDLELGENLFSGFI  293 (823)
Q Consensus       214 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~lp~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~  293 (823)
                      |+++. +|..+.  ++|+.|++++|.++ .+|..+   .++|+.|+|++|+|+ .+|..+.  ++|++|+|++|+|+. +
T Consensus       314 N~Lt~-LP~~l~--~sL~~L~Ls~N~Lt-~LP~~l---~~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt~-L  382 (754)
T PRK15370        314 NSLTA-LPETLP--PGLKTLEAGENALT-SLPASL---PPELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALTN-L  382 (754)
T ss_pred             Ccccc-CCcccc--ccceeccccCCccc-cCChhh---cCcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCCC-C
Confidence            55543 222221  34455555555554 244332   234455555555444 2333332  344455555554442 2


Q ss_pred             CCccCCCcccCcccccCccccC
Q 045449          294 PNTIGNLRNLEFGNIADNYLTS  315 (823)
Q Consensus       294 p~~~~~l~~L~~L~L~~N~l~~  315 (823)
                      |..+.  ..|+.|++++|+++.
T Consensus       383 P~~l~--~sL~~LdLs~N~L~~  402 (754)
T PRK15370        383 PENLP--AALQIMQASRNNLVR  402 (754)
T ss_pred             CHhHH--HHHHHHhhccCCccc
Confidence            22221  134444444444443

>cd05632 STKc_GRK5 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5

Probab=99.84  E-value=1.5e-21  Score=207.97  Aligned_cols=135  Identities=23%  Similarity=0.255  Sum_probs=114.4

Q ss_pred             CeEEEEEEehHhh---HHHHHHHHHHHHHHhhcchhhHHH----------------------------------------
Q 045449          641 GMEVAVKVFHQQY---ERALKSFEDECEVRKRIRHRNLVK----------------------------------------  677 (823)
Q Consensus       641 ~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~----------------------------------------  677 (823)
                      ++.||+|.+....   ....+.+.+|++++++++|++|+.                                        
T Consensus        25 ~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~  104 (285)
T cd05632          25 GKMYACKRLEKKRIKKRKGESMALNEKQILEKVNSQFVVNLAYAYETKDALCLVLTIMNGGDLKFHIYNMGNPGFEEERA  104 (285)
T ss_pred             CcEEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCcCceeEEEEEecCCEEEEEEEeccCccHHHHHHHhcCCCCCHHHH
Confidence            5679999986543   223456788999999999999997                                        


Q ss_pred             --HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccCCCccccc
Q 045449          678 --IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTR  755 (823)
Q Consensus       678 --~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~  755 (823)
                        ++.|++.+|+|+|+.+|+||||||+||+++.++.+||+|||+++.......   .....|+..|+|||++.+..++.+
T Consensus       105 ~~~~~ql~~~l~~lH~~~iiH~dikp~Nili~~~~~~kl~Dfg~~~~~~~~~~---~~~~~g~~~~~aPE~~~~~~~~~~  181 (285)
T cd05632         105 LFYAAEILCGLEDLHRENTVYRDLKPENILLDDYGHIRISDLGLAVKIPEGES---IRGRVGTVGYMAPEVLNNQRYTLS  181 (285)
T ss_pred             HHHHHHHHHHHHHHHhCCeeecCCCHHHEEECCCCCEEEecCCcceecCCCCc---ccCCCCCcCccChHHhcCCCCCcc
Confidence              356889999999999999999999999999999999999999976543221   234578999999999988899999


Q ss_pred             cceehhhhhhccccCCCCCcCCC
Q 045449          756 GDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       756 ~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      +|+||+||+++++.+|..||...
T Consensus       182 ~Di~slG~~l~~l~~g~~P~~~~  204 (285)
T cd05632         182 PDYWGLGCLIYEMIEGQSPFRGR  204 (285)
T ss_pred             cchHHHHHHHHHHHhCCCCCCCC
Confidence            99999999999999999999764

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with

>cd05111 PTK_HER3 Pseudokinase domain of the Protein Tyrosine Kinase, HER3

Probab=99.84  E-value=1.4e-21  Score=207.48  Aligned_cols=137  Identities=22%  Similarity=0.307  Sum_probs=113.0

Q ss_pred             EEEEEEehHhh-HHHHHHHHHHHHHHhhcchhhHHH----------------------------------------HHHH
Q 045449          643 EVAVKVFHQQY-ERALKSFEDECEVRKRIRHRNLVK----------------------------------------IISS  681 (823)
Q Consensus       643 ~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~----------------------------------------~~~~  681 (823)
                      .||+|.+.... ....+++..|+..++++.||||++                                        ++.|
T Consensus        38 ~~~~k~~~~~~~~~~~~~~~~~~~~l~~l~h~~iv~~~~~~~~~~~~~i~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~q  117 (279)
T cd05111          38 PVAIKTIQDRSGRQTFQEITDHMLAMGSLDHAYIVRLLGICPGASLQLVTQLSPLGSLLDHVRQHRDSLDPQRLLNWCVQ  117 (279)
T ss_pred             EEEEeecccccchHHHHHHHHHHHHHhcCCCCCcceEEEEECCCccEEEEEeCCCCcHHHHHHhcccCCCHHHHHHHHHH
Confidence            47888875433 234467888999999999999998                                        3568


Q ss_pred             HHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccCCCccccccceehh
Q 045449          682 SLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSF  761 (823)
Q Consensus       682 ~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~  761 (823)
                      ++.+|.|+|+.+++||||||+||++++++.+||+|||+++...............++..|+|||+..++.++.++|||||
T Consensus       118 i~~~l~~lH~~~iiH~dlkp~nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~~pE~~~~~~~~~~~Dv~sl  197 (279)
T cd05111         118 IAKGMYYLEEHRMVHRNLAARNILLKSDSIVQIADFGVADLLYPDDKKYFYSEHKTPIKWMALESILFGRYTHQSDVWSY  197 (279)
T ss_pred             HHHHHHHHHHCCEeccccCcceEEEcCCCcEEEcCCccceeccCCCcccccCCCCCcccccCHHHhccCCcCchhhHHHH
Confidence            88999999999999999999999999999999999999987644332222334557789999999988899999999999


Q ss_pred             hhhhccccC-CCCCcCCCc
Q 045449          762 GIISGGKET-RSMTVGETC  779 (823)
Q Consensus       762 Gvv~~~~~~-~~~~~~~~~  779 (823)
                      ||++|++++ |..||.+..
T Consensus       198 G~il~el~t~g~~p~~~~~  216 (279)
T cd05111         198 GVTVWEMMSYGAEPYAGMR  216 (279)
T ss_pred             HHHHHHHHcCCCCCCCCCC
Confidence            999999997 888887653

Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr r

>KOG0664 consensus Nemo-like MAPK-related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.84  E-value=5.3e-22  Score=192.64  Aligned_cols=136  Identities=27%  Similarity=0.403  Sum_probs=114.6

Q ss_pred             CeEEEEEEehHhhH--HHHHHHHHHHHHHhhcchhhHHH-----------------------------------------
Q 045449          641 GMEVAVKVFHQQYE--RALKSFEDECEVRKRIRHRNLVK-----------------------------------------  677 (823)
Q Consensus       641 ~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~niv~-----------------------------------------  677 (823)
                      |+.||.|.+.....  ...+++.+|.+++.-.+|.|+..                                         
T Consensus        78 grrvalkK~pnvfq~L~s~krvFre~kmLcfFkHdNVLSaLDILQPph~dfFqEiYV~TELmQSDLHKIIVSPQ~Ls~DH  157 (449)
T KOG0664|consen   78 GKRVALKKMPNVFQNLASCKRVFREIKMLSSFRHDNVLSLLDILQPANPSFFQELYVLTELMQSDLHKIIVSPQALTPDH  157 (449)
T ss_pred             ccchhHhhcchHHHHHHHHHHHHHHHHHHHhhccccHHHHHHhcCCCCchHHHHHHHHHHHHHhhhhheeccCCCCCcch
Confidence            56678887754432  34478899999999999999987                                         


Q ss_pred             ---HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccCCCc-cc
Q 045449          678 ---IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGR-VS  753 (823)
Q Consensus       678 ---~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~-~~  753 (823)
                         ++.|++.+|.|+|+.+|+||||||.|.|++.+-..||||||+||....++. ..++..+-|-.|+|||++.+.+ |+
T Consensus       158 vKVFlYQILRGLKYLHsA~ILHRDIKPGNLLVNSNCvLKICDFGLARvee~d~~-~hMTqEVVTQYYRAPEiLMGaRhYs  236 (449)
T KOG0664|consen  158 VKVFVYQILRGLKYLHTANILHRDIKPGNLLVNSNCILKICDFGLARTWDQRDR-LNMTHEVVTQYYRAPELLMGARRYT  236 (449)
T ss_pred             hhhhHHHHHhhhHHHhhcchhhccCCCccEEeccCceEEecccccccccchhhh-hhhHHHHHHHHhccHHHhhcchhhc
Confidence               357999999999999999999999999999999999999999998654433 3456677899999999988764 89


Q ss_pred             cccceehhhhhhccccCCCCCcCC
Q 045449          754 TRGDVCSFGIISGGKETRSMTVGE  777 (823)
Q Consensus       754 ~~~Dv~S~Gvv~~~~~~~~~~~~~  777 (823)
                      ...||||.||+++|++-++..|+.
T Consensus       237 ~AvDiWSVGCIFaELLgRrILFQA  260 (449)
T KOG0664|consen  237 GAVDIWSVGCIFAELLQRKILFQA  260 (449)
T ss_pred             CccceehhhHHHHHHHhhhhhhhc
Confidence            999999999999999888877754

>cd05062 PTKc_IGF-1R Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor

Probab=99.84  E-value=7.7e-22  Score=209.32  Aligned_cols=137  Identities=24%  Similarity=0.355  Sum_probs=111.3

Q ss_pred             eEEEEEEehHhh-HHHHHHHHHHHHHHhhcchhhHHH-------------------------------------------
Q 045449          642 MEVAVKVFHQQY-ERALKSFEDECEVRKRIRHRNLVK-------------------------------------------  677 (823)
Q Consensus       642 ~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~-------------------------------------------  677 (823)
                      ..||||++.... .....+|.+|+.++++++||||++                                           
T Consensus        37 ~~~aik~~~~~~~~~~~~~~~~e~~~l~~l~~~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~  116 (277)
T cd05062          37 TRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPEMENNPVQAPP  116 (277)
T ss_pred             eEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEcCCCCeEEEEecCCCCCHHHHHHHcCccccccccccCC
Confidence            458999886432 334467999999999999999997                                           


Q ss_pred             -------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccCCC
Q 045449          678 -------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKG  750 (823)
Q Consensus       678 -------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~  750 (823)
                             ++.|++++|+|+|+.+++||||||+||++++++.+||+|||+++...............+++.|+|||++.++
T Consensus       117 ~~~~~~~~~~~l~~~l~~lH~~~~vH~dlkp~Nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~  196 (277)
T cd05062         117 SLKKMIQMAGEIADGMAYLNANKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDG  196 (277)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHCCcccCCcchheEEEcCCCCEEECCCCCccccCCcceeecCCCCccCHhhcChhHhhcC
Confidence                   1336788899999999999999999999999999999999999865433322222234567889999999888


Q ss_pred             ccccccceehhhhhhccccC-CCCCcCCC
Q 045449          751 RVSTRGDVCSFGIISGGKET-RSMTVGET  778 (823)
Q Consensus       751 ~~~~~~Dv~S~Gvv~~~~~~-~~~~~~~~  778 (823)
                      .++.++|||||||+++++++ +..||.+.
T Consensus       197 ~~~~~~Di~slG~~l~el~~~~~~p~~~~  225 (277)
T cd05062         197 VFTTYSDVWSFGVVLWEIATLAEQPYQGM  225 (277)
T ss_pred             CcCchhHHHHHHHHHHHHHcCCCCCCCCC
Confidence            89999999999999999998 67787654

Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, wh

>cd05570 STKc_PKC Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C

Probab=99.84  E-value=2.2e-21  Score=210.07  Aligned_cols=137  Identities=24%  Similarity=0.201  Sum_probs=114.8

Q ss_pred             CCeEEEEEEehHhh---HHHHHHHHHHHHHHhhc-chhhHHH--------------------------------------
Q 045449          640 NGMEVAVKVFHQQY---ERALKSFEDECEVRKRI-RHRNLVK--------------------------------------  677 (823)
Q Consensus       640 ~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l-~h~niv~--------------------------------------  677 (823)
                      .+..||||+++...   ....+.+.+|++++..+ +||||++                                      
T Consensus        19 ~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~l~~~~~   98 (318)
T cd05570          19 TDELYAVKVLKKDVILQDDDVECTMTEKRVLALAGKHPFLTQLHSCFQTKDRLFFVMEYVNGGDLMFHIQRSGRFDEPRA   98 (318)
T ss_pred             CCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhccCCCCccceeeEEEcCCEEEEEEcCCCCCCHHHHHHHcCCCCHHHH
Confidence            35789999997653   23446778899999888 7999998                                      


Q ss_pred             --HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccCCCccccc
Q 045449          678 --IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTR  755 (823)
Q Consensus       678 --~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~  755 (823)
                        ++.|++++|.|+|+.+|+||||||+||+++.++.+||+|||+++.......  .....+||+.|+|||++.+..++.+
T Consensus        99 ~~~~~qi~~~l~~LH~~~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~--~~~~~~g~~~y~aPE~~~~~~~~~~  176 (318)
T cd05570          99 RFYAAEIVLGLQFLHERGIIYRDLKLDNVLLDSEGHIKIADFGMCKEGILGGV--TTSTFCGTPDYIAPEILSYQPYGPA  176 (318)
T ss_pred             HHHHHHHHHHHHHHHhCCeEccCCCHHHeEECCCCcEEecccCCCeecCcCCC--cccceecCccccCHHHhcCCCCCcc
Confidence              356889999999999999999999999999999999999999875322221  1234579999999999999999999


Q ss_pred             cceehhhhhhccccCCCCCcCCC
Q 045449          756 GDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       756 ~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      +||||+||++|++++|..||...
T Consensus       177 ~DiwslGvil~~l~~G~~pf~~~  199 (318)
T cd05570         177 VDWWALGVLLYEMLAGQSPFEGD  199 (318)
T ss_pred             hhhhhHHHHHHHHhhCCCCCCCC
Confidence            99999999999999999998653

Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only re

>cd05607 STKc_GRK7 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7

Probab=99.84  E-value=1.1e-21  Score=208.18  Aligned_cols=136  Identities=26%  Similarity=0.230  Sum_probs=114.4

Q ss_pred             CCeEEEEEEehHhhH---HHHHHHHHHHHHHhhcchhhHHH---------------------------------------
Q 045449          640 NGMEVAVKVFHQQYE---RALKSFEDECEVRKRIRHRNLVK---------------------------------------  677 (823)
Q Consensus       640 ~~~~vavK~~~~~~~---~~~~~~~~E~~~l~~l~h~niv~---------------------------------------  677 (823)
                      .|..||+|++.....   ...+.+..|++++++++||||++                                       
T Consensus        17 ~~~~~a~K~~~~~~~~~~~~~~~~~~E~~il~~l~hp~i~~~~~~~~~~~~~~lv~e~~~g~~L~~~~~~~~~~~~~~~~   96 (277)
T cd05607          17 TGKMYACKKLDKKRLKKKSGEKMALLEKEILEKVNSPFIVNLAYAFESKTHLCLVMSLMNGGDLKYHIYNVGERGLEMER   96 (277)
T ss_pred             CCcEEEEEEEcHHHhhcchhhHHHHHHHHHHHhcCCCcEEEEEEEEecCCeEEEEEecCCCCCHHHHHHhccccCCCHHH
Confidence            368899999865431   23345677999999999999998                                       


Q ss_pred             ---HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccCCCcccc
Q 045449          678 ---IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVST  754 (823)
Q Consensus       678 ---~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~  754 (823)
                         ++.|++.+|.|+|+.+|+||||||+||+++.++.+||+|||++........   .....|++.|+|||++.+..++.
T Consensus        97 ~~~~~~qi~~al~~lH~~~ivH~dikp~Nili~~~~~~~l~Dfg~~~~~~~~~~---~~~~~~~~~y~aPE~~~~~~~~~  173 (277)
T cd05607          97 VIHYSAQITCGILHLHSMDIVYRDMKPENVLLDDQGNCRLSDLGLAVELKDGKT---ITQRAGTNGYMAPEILKEEPYSY  173 (277)
T ss_pred             HHHHHHHHHHHHHHHHHCCEEEccCChHhEEEcCCCCEEEeeceeeeecCCCce---eeccCCCCCccCHHHHccCCCCC
Confidence               245888999999999999999999999999999999999999987643221   23356899999999998888999


Q ss_pred             ccceehhhhhhccccCCCCCcCCC
Q 045449          755 RGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       755 ~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      ++||||+||++|++++|..||...
T Consensus       174 ~~DvwslGv~l~el~~g~~p~~~~  197 (277)
T cd05607         174 PVDWFAMGCSIYEMVAGRTPFKDH  197 (277)
T ss_pred             chhHHHHHHHHHHHHhCCCCCCCC
Confidence            999999999999999999998654

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual gr

>cd05091 PTKc_Ror2 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2

Probab=99.84  E-value=7.9e-22  Score=209.93  Aligned_cols=138  Identities=25%  Similarity=0.340  Sum_probs=113.4

Q ss_pred             CeEEEEEEehHhh-HHHHHHHHHHHHHHhhcchhhHHH------------------------------------------
Q 045449          641 GMEVAVKVFHQQY-ERALKSFEDECEVRKRIRHRNLVK------------------------------------------  677 (823)
Q Consensus       641 ~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~------------------------------------------  677 (823)
                      +..||||++.... ....+.|.+|+.++.+++||||++                                          
T Consensus        35 ~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~l~h~~iv~~~~~~~~~~~~~~~~e~~~~~~l~~~l~~~~~~~~~~~~~~~  114 (283)
T cd05091          35 TQAVAIKTLKDKAEGPLREEFKHEAMMRSRLQHPNIVCLLGVVTKEQPLSMIFSYCSHSDLHEFLVMRSPHSDVGSTDDD  114 (283)
T ss_pred             eeEEEEEEccCCCCHHHHHHHHHHHHHHhcCCCCCcCeEEEEEcCCCceEEEEEcCCCCcHHHHHHhcCCCccccccccc
Confidence            3679999997543 334567999999999999999985                                          


Q ss_pred             --------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCc
Q 045449          678 --------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMA  743 (823)
Q Consensus       678 --------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~a  743 (823)
                                    ++.|++.+|.|+|+.+|+||||||+||++++++.+||+|||+++...............+++.|+|
T Consensus       115 ~~~~~~~~~~~~~~~~~ql~~aL~~lH~~gi~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~a  194 (283)
T cd05091         115 KTVKSTLEPADFVHIVTQIAAGMEFLSSHHVVHKDLATRNVLVFDKLNVKISDLGLFREVYAADYYKLMGNSLLPIRWMS  194 (283)
T ss_pred             cccccccCHHHHHHHHHHHHHHHHHHHHcCccccccchhheEecCCCceEecccccccccccchheeeccCccCCccccC
Confidence                          234788899999999999999999999999999999999999987644332222233456789999


Q ss_pred             ccccCCCccccccceehhhhhhccccC-CCCCcCCC
Q 045449          744 PEYGTKGRVSTRGDVCSFGIISGGKET-RSMTVGET  778 (823)
Q Consensus       744 PE~~~~~~~~~~~Dv~S~Gvv~~~~~~-~~~~~~~~  778 (823)
                      ||++.++.++.++||||+||+++++++ |..||.+.
T Consensus       195 PE~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~  230 (283)
T cd05091         195 PEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGY  230 (283)
T ss_pred             HHHHhcCCCCcchhHHHHHHHHHHHHcCCCCCCCCC
Confidence            999988889999999999999999997 77777654

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.84  E-value=1.1e-21  Score=200.39  Aligned_cols=114  Identities=24%  Similarity=0.187  Sum_probs=98.8

Q ss_pred             HHHHHhhcchhhHHHHHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcC
Q 045449          663 ECEVRKRIRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYM  742 (823)
Q Consensus       663 E~~~l~~l~h~niv~~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~  742 (823)
                      .++...+.+.|..|-++|.++.+|-++|++||+.||+|.+|||+|.+|++||+|||+++.-..+..  ...+++|||.|+
T Consensus       440 hiQQ~GkFKEp~AvFYAaEiaigLFFLh~kgIiYRDLKLDNvmLd~eGHiKi~DFGmcKEni~~~~--TTkTFCGTPdYi  517 (683)
T KOG0696|consen  440 HIQQVGKFKEPVAVFYAAEIAIGLFFLHSKGIIYRDLKLDNVMLDSEGHIKIADFGMCKENIFDGV--TTKTFCGTPDYI  517 (683)
T ss_pred             HHHHhcccCCchhhhhhHHHHHHhhhhhcCCeeeeeccccceEeccCCceEeeecccccccccCCc--ceeeecCCCccc
Confidence            445555556666666789999999999999999999999999999999999999999986433322  245689999999


Q ss_pred             cccccCCCccccccceehhhhhhccccCCCCCcCCC
Q 045449          743 APEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       743 aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      |||++...+|+..+|+|||||++|||+.|+.||++.
T Consensus       518 APEIi~YqPYgksvDWWa~GVLLyEmlaGQpPFdGe  553 (683)
T KOG0696|consen  518 APEIIAYQPYGKSVDWWAFGVLLYEMLAGQPPFDGE  553 (683)
T ss_pred             ccceEEecccccchhHHHHHHHHHHHHcCCCCCCCC
Confidence            999999999999999999999999999999999775

>cd05090 PTKc_Ror1 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1

Probab=99.84  E-value=1.6e-21  Score=207.59  Aligned_cols=138  Identities=24%  Similarity=0.326  Sum_probs=112.9

Q ss_pred             CeEEEEEEehHhh-HHHHHHHHHHHHHHhhcchhhHHH------------------------------------------
Q 045449          641 GMEVAVKVFHQQY-ERALKSFEDECEVRKRIRHRNLVK------------------------------------------  677 (823)
Q Consensus       641 ~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~------------------------------------------  677 (823)
                      +..||+|.+.... ....+.|.+|++++++++||||++                                          
T Consensus        34 ~~~~~ik~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~  113 (283)
T cd05090          34 AQLVAIKTLKDINNPQQWGEFQQEASLMAELHHPNIVCLLGVVTQEQPVCMLFEYLNQGDLHEFLIMRSPHSDVGCSSDE  113 (283)
T ss_pred             cceEEEEeccCCCCHHHHHHHHHHHHHHhhCCCCCeeeEEEEEecCCceEEEEEcCCCCcHHHHHHhcCCCCcccccccc
Confidence            4678999986432 344578999999999999999987                                          


Q ss_pred             ---------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcC
Q 045449          678 ---------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYM  742 (823)
Q Consensus       678 ---------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~  742 (823)
                                     ++.|++.+|.|+|+.+++||||||+||+++.++.+||+|||+++...............++..|+
T Consensus       114 ~~~~~~~~~~~~~~~i~~~i~~al~~lH~~~i~H~dlkp~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~  193 (283)
T cd05090         114 DGTVKSSLDHGDFLHIAIQIAAGMEYLSSHFFVHKDLAARNILIGEQLHVKISDLGLSREIYSADYYRVQPKSLLPIRWM  193 (283)
T ss_pred             ccccccccCHHHHHHHHHHHHHHHHHHHhcCeehhccccceEEEcCCCcEEeccccccccccCCcceecccCCCccceec
Confidence                           12367888999999999999999999999999999999999998764433222223345677899


Q ss_pred             cccccCCCccccccceehhhhhhccccC-CCCCcCCC
Q 045449          743 APEYGTKGRVSTRGDVCSFGIISGGKET-RSMTVGET  778 (823)
Q Consensus       743 aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~-~~~~~~~~  778 (823)
                      |||+..+..++.++|||||||+++++++ |..||.+.
T Consensus       194 aPE~~~~~~~~~~~Dv~slG~il~el~~~g~~p~~~~  230 (283)
T cd05090         194 PPEAIMYGKFSSDSDIWSFGVVLWEIFSFGLQPYYGF  230 (283)
T ss_pred             ChHHhccCCCCchhhhHHHHHHHHHHHcCCCCCCCCC
Confidence            9999988889999999999999999998 88888654

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>KOG0984 consensus Mitogen-activated protein kinase (MAPK) kinase MKK3/MKK6 [Signal transduction mechanisms]

Probab=99.84  E-value=1e-21  Score=183.89  Aligned_cols=138  Identities=30%  Similarity=0.332  Sum_probs=106.4

Q ss_pred             CeEEEEEEehHhh-HHHHHHHHHHHHHHhhc-chhhHHH-----------------------------------------
Q 045449          641 GMEVAVKVFHQQY-ERALKSFEDECEVRKRI-RHRNLVK-----------------------------------------  677 (823)
Q Consensus       641 ~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l-~h~niv~-----------------------------------------  677 (823)
                      |+..|||+++... .+..++..+|+++..+. ..|.+|.                                         
T Consensus        71 g~imAvKri~~tvn~q~q~r~L~dldi~~r~~~CPf~V~FyGa~~regdvwIcME~M~tSldkfy~~v~~~g~~ipE~vl  150 (282)
T KOG0984|consen   71 GTIMAVKRIRATVNSQEQKRLLMDLDIIMRTVDCPFTVHFYGALFREGDVWICMELMDTSLDKFYRKVLKKGGTIPEDVL  150 (282)
T ss_pred             CeEEEEeeehhhcChHHHHHHHHhhhhhccCCCCCeEEEeehhhhccccEEEeHHHhhhhHHHHHHHHHhcCCcCchHHh
Confidence            6789999997543 33445677777765554 5666665                                         


Q ss_pred             --HHHHHHHHhhhcCCC-CEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccCC----C
Q 045449          678 --IISSSLEYLHFGHSI-PIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTK----G  750 (823)
Q Consensus       678 --~~~~~l~~L~~~h~~-~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~----~  750 (823)
                        ++..++.+|+|+|++ .|+|||+||+|||++.+|++|+||||.+..+...-.   -+.-.|-..|||||.+..    .
T Consensus       151 GkIa~Svv~al~~L~~kL~vIHRDvKPsNiLIn~~GqVKiCDFGIsG~L~dSiA---kt~daGCkpYmaPEri~~e~n~~  227 (282)
T KOG0984|consen  151 GKIAVSVVHALEFLHSKLSVIHRDVKPSNILINYDGQVKICDFGISGYLVDSIA---KTMDAGCKPYMAPERINPELNQK  227 (282)
T ss_pred             hHhHHHHHHHHHHHHHHhhhhhccCCcceEEEccCCcEEEcccccceeehhhhH---HHHhcCCCccCChhhcCcccCcc
Confidence              345677888888875 899999999999999999999999999987653321   122357789999998754    3


Q ss_pred             ccccccceehhhhhhccccCCCCCcCCCccc
Q 045449          751 RVSTRGDVCSFGIISGGKETRSMTVGETCTP  781 (823)
Q Consensus       751 ~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~~~~  781 (823)
                      .|+.|+||||+|+.+.|+.+++.|+......
T Consensus       228 gY~vksDvWSLGItmiElA~lr~PY~~w~tp  258 (282)
T KOG0984|consen  228 GYSVKSDVWSLGITMIEMAILRFPYESWGTP  258 (282)
T ss_pred             cceeehhhhhhhhhhhhhhhccccccccCCH
Confidence            6999999999999999999999998765443

>KOG0194 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=99.84  E-value=8.2e-22  Score=214.50  Aligned_cols=136  Identities=28%  Similarity=0.322  Sum_probs=112.5

Q ss_pred             EEEEEehH---hhHHHHHHHHHHHHHHhhcchhhHHH-----------------------------------------HH
Q 045449          644 VAVKVFHQ---QYERALKSFEDECEVRKRIRHRNLVK-----------------------------------------II  679 (823)
Q Consensus       644 vavK~~~~---~~~~~~~~~~~E~~~l~~l~h~niv~-----------------------------------------~~  679 (823)
                      ||||....   .....+.+|.+|+++|+.++|||||+                                         ++
T Consensus       189 VAvK~~k~~~~~~~~~~~e~m~EArvMr~l~H~NVVr~yGVa~~~~Pl~ivmEl~~gGsL~~~L~k~~~~v~~~ek~~~~  268 (474)
T KOG0194|consen  189 VAVKTTKGSSELTKEQIKEFMKEARVMRQLNHPNVVRFYGVAVLEEPLMLVMELCNGGSLDDYLKKNKKSLPTLEKLRFC  268 (474)
T ss_pred             eEEEeecccccccHHHHHHHHHHHHHHHhCCCCCEEEEEEEEcCCCccEEEEEecCCCcHHHHHHhCCCCCCHHHHHHHH
Confidence            89999885   23667789999999999999999998                                         34


Q ss_pred             HHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccCCCcccccccee
Q 045449          680 SSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVC  759 (823)
Q Consensus       680 ~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~  759 (823)
                      .+++.+|.|+|+.+++||||-.+|+|++.++.+||+|||+++.-..  .........-...|+|||.+..+.|+.++|||
T Consensus       269 ~~AA~Gl~YLh~k~~IHRDIAARNcL~~~~~~vKISDFGLs~~~~~--~~~~~~~~klPirWLAPEtl~~~~~s~kTDV~  346 (474)
T KOG0194|consen  269 YDAARGLEYLHSKNCIHRDIAARNCLYSKKGVVKISDFGLSRAGSQ--YVMKKFLKKLPIRWLAPETLNTGIFSFKTDVW  346 (474)
T ss_pred             HHHHhHHHHHHHCCCcchhHhHHHheecCCCeEEeCccccccCCcc--eeeccccccCcceecChhhhccCccccccchh
Confidence            6777888888999999999999999999999999999999886431  11111112346789999999999999999999


Q ss_pred             hhhhhhccccC-CCCCcCCCccc
Q 045449          760 SFGIISGGKET-RSMTVGETCTP  781 (823)
Q Consensus       760 S~Gvv~~~~~~-~~~~~~~~~~~  781 (823)
                      ||||++||..+ |..|+.+....
T Consensus       347 sfGV~~~Eif~~g~~Py~g~~~~  369 (474)
T KOG0194|consen  347 SFGVLLWEIFENGAEPYPGMKNY  369 (474)
T ss_pred             heeeeEEeeeccCCCCCCCCCHH
Confidence            99999999988 67788776433

>cd06651 STKc_MEKK3 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 3

Probab=99.84  E-value=2.8e-21  Score=203.76  Aligned_cols=150  Identities=25%  Similarity=0.306  Sum_probs=121.4

Q ss_pred             cCCccceeeccC------------CeEEEEEEehHh-----hHHHHHHHHHHHHHHhhcchhhHHH--------------
Q 045449          629 RFSENNLIGIGN------------GMEVAVKVFHQQ-----YERALKSFEDECEVRKRIRHRNLVK--------------  677 (823)
Q Consensus       629 ~f~~~~~lg~g~------------~~~vavK~~~~~-----~~~~~~~~~~E~~~l~~l~h~niv~--------------  677 (823)
                      +|...+.+|.|+            +..||+|++...     ..+..+.+.+|+.++++++||||++              
T Consensus         3 ~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~   82 (266)
T cd06651           3 NWRRGKLLGQGAFGRVYLCYDVDTGRELAAKQVQFDPESPETSKEVSALECEIQLLKNLQHERIVQYYGCLRDRAEKTLT   82 (266)
T ss_pred             CccccceecCCCCEEEEEEEEcCCCcEEEEEEeecCcCCchhHHHHHHHHHHHHHHHHcCCCCeeeEEEEEEcCCCCEEE
Confidence            456666677664            567999987532     2334567899999999999999998              


Q ss_pred             ----------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCc-
Q 045449          678 ----------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQ-  728 (823)
Q Consensus       678 ----------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~-  728 (823)
                                                  ++.|++++|.++|+.+|+|||+||+||+++.++.+||+|||+++....... 
T Consensus        83 l~~e~~~~~~L~~~l~~~~~l~~~~~~~~~~qi~~~l~~LH~~~i~H~~l~p~nil~~~~~~~~l~dfg~~~~~~~~~~~  162 (266)
T cd06651          83 IFMEYMPGGSVKDQLKAYGALTESVTRKYTRQILEGMSYLHSNMIVHRDIKGANILRDSAGNVKLGDFGASKRLQTICMS  162 (266)
T ss_pred             EEEeCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhCCeeeCCCCHHHEEECCCCCEEEccCCCcccccccccc
Confidence                                        356788899999999999999999999999999999999999986532211 


Q ss_pred             cccccccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCC
Q 045449          729 LSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       729 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      ........++..|+|||++.+..++.++||||+||+++++.+|..||.+.
T Consensus       163 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~i~~el~~g~~pf~~~  212 (266)
T cd06651         163 GTGIRSVTGTPYWMSPEVISGEGYGRKADVWSLGCTVVEMLTEKPPWAEY  212 (266)
T ss_pred             CCccccCCccccccCHHHhCCCCCCchhhhHHHHHHHHHHHHCCCCcccc
Confidence            11122345889999999998888999999999999999999999999765

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development

>cd05109 PTKc_HER2 Catalytic domain of the Protein Tyrosine Kinase, HER2

Probab=99.84  E-value=2e-21  Score=206.44  Aligned_cols=136  Identities=24%  Similarity=0.286  Sum_probs=111.9

Q ss_pred             EEEEEEehHh-hHHHHHHHHHHHHHHhhcchhhHHH----------------------------------------HHHH
Q 045449          643 EVAVKVFHQQ-YERALKSFEDECEVRKRIRHRNLVK----------------------------------------IISS  681 (823)
Q Consensus       643 ~vavK~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~----------------------------------------~~~~  681 (823)
                      .||||++... .....+.+.+|+.++.+++|+||++                                        ++.|
T Consensus        38 ~va~K~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~l~~~~~~~g~l~~~l~~~~~~~~~~~~~~~~~q  117 (279)
T cd05109          38 PVAIKVLRENTSPKANKEILDEAYVMAGVGSPYVCRLLGICLTSTVQLVTQLMPYGCLLDYVRENKDRIGSQDLLNWCVQ  117 (279)
T ss_pred             EEEEEEecCCCCHHHHHHHHHHHHHHHhcCCCCCceEEEEEcCCCcEEEEEcCCCCCHHHHHhhccCCCCHHHHHHHHHH
Confidence            4799998643 2444578999999999999999986                                        3578


Q ss_pred             HHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccCCCccccccceehh
Q 045449          682 SLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSF  761 (823)
Q Consensus       682 ~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~  761 (823)
                      ++.+|.|+|+.+|+||||||+||++++++.+||+|||+++...............+++.|+|||...+..++.++|||||
T Consensus       118 i~~~L~~lH~~~iiH~dlkp~Nil~~~~~~~kL~dfG~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~sl  197 (279)
T cd05109         118 IAKGMSYLEEVRLVHRDLAARNVLVKSPNHVKITDFGLARLLDIDETEYHADGGKVPIKWMALESILHRRFTHQSDVWSY  197 (279)
T ss_pred             HHHHHHHHHHCCeeccccccceEEEcCCCcEEECCCCceeecccccceeecCCCccchhhCCHHHhccCCCCchhHHHHH
Confidence            89999999999999999999999999999999999999987653322211222345678999999988899999999999


Q ss_pred             hhhhccccC-CCCCcCCC
Q 045449          762 GIISGGKET-RSMTVGET  778 (823)
Q Consensus       762 Gvv~~~~~~-~~~~~~~~  778 (823)
                      ||++|++.+ |..||...
T Consensus       198 G~~l~el~t~g~~p~~~~  215 (279)
T cd05109         198 GVTVWELMTFGAKPYDGI  215 (279)
T ss_pred             HHHHHHHHcCCCCCCCCC
Confidence            999999887 88888654

Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve

>cd05092 PTKc_TrkA Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A

Probab=99.83  E-value=1.8e-21  Score=206.92  Aligned_cols=138  Identities=27%  Similarity=0.376  Sum_probs=115.2

Q ss_pred             CeEEEEEEehHhhHHHHHHHHHHHHHHhhcchhhHHH-------------------------------------------
Q 045449          641 GMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVK-------------------------------------------  677 (823)
Q Consensus       641 ~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~-------------------------------------------  677 (823)
                      +..||+|.+........+.|.+|++++++++|+||++                                           
T Consensus        35 ~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~  114 (280)
T cd05092          35 KMLVAVKALKEASESARQDFQREAELLTVLQHQHIVRFYGVCTEGRPLLMVFEYMRHGDLNRFLRSHGPDAKILAGGEDV  114 (280)
T ss_pred             ceEEEEEecCcCCHHHHHHHHHHHHHHhcCCCCCCceEEEEEecCCceEEEEecCCCCCHHHHHHhcCcchhhhcccccC
Confidence            4678999887666666788999999999999999988                                           


Q ss_pred             ------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCccc
Q 045449          678 ------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPE  745 (823)
Q Consensus       678 ------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE  745 (823)
                                  ++.|++.++.|+|+.+++||||||+||++++++.+||+|||+++...............+++.|+|||
T Consensus       115 ~~~~l~~~~~~~~~~qi~~al~~LH~~~i~H~dlkp~nil~~~~~~~kL~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE  194 (280)
T cd05092         115 APGQLTLGQMLAIASQIASGMVYLASLHFVHRDLATRNCLVGQGLVVKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPE  194 (280)
T ss_pred             CccccCHHHHHHHHHHHHHHHHHHHHCCeecccccHhhEEEcCCCCEEECCCCceeEcCCCceeecCCCccccccccCHH
Confidence                        13477888999999999999999999999999999999999998654333222223344678899999


Q ss_pred             ccCCCccccccceehhhhhhccccC-CCCCcCCC
Q 045449          746 YGTKGRVSTRGDVCSFGIISGGKET-RSMTVGET  778 (823)
Q Consensus       746 ~~~~~~~~~~~Dv~S~Gvv~~~~~~-~~~~~~~~  778 (823)
                      +..+..++.++|||||||+++++.+ |..||.+.
T Consensus       195 ~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~  228 (280)
T cd05092         195 SILYRKFTTESDIWSFGVVLWEIFTYGKQPWYQL  228 (280)
T ss_pred             HhccCCcCchhhHHHHHHHHHHHHcCCCCCCccC
Confidence            9998899999999999999999997 88888654

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory

>cd07872 STKc_PCTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase

Probab=99.83  E-value=1.4e-21  Score=210.81  Aligned_cols=149  Identities=24%  Similarity=0.304  Sum_probs=119.5

Q ss_pred             ccCCccceeeccC------------CeEEEEEEehHhh-HHHHHHHHHHHHHHhhcchhhHHH-----------------
Q 045449          628 DRFSENNLIGIGN------------GMEVAVKVFHQQY-ERALKSFEDECEVRKRIRHRNLVK-----------------  677 (823)
Q Consensus       628 ~~f~~~~~lg~g~------------~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~-----------------  677 (823)
                      ++|...+.+|.|+            +..||+|+++... ......+.+|++++++++||||++                 
T Consensus         6 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~   85 (309)
T cd07872           6 ETYIKLEKLGEGTYATVFKGRSKLTENLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIVHTDKSLTLVFEY   85 (309)
T ss_pred             CceEEEEEecccCCEEEEEEEecCCCCeEEEEEeeccccCCcchhHHHHHHHHHhCCCCCcceEEEEEeeCCeEEEEEeC
Confidence            3455666677664            4569999986443 223346788999999999999998                 


Q ss_pred             -----------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccc
Q 045449          678 -----------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQ  734 (823)
Q Consensus       678 -----------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~  734 (823)
                                             ++.|++.+|+|+|+.+|+||||||+||+++.++.+||+|||+++.......  ....
T Consensus        86 ~~~~l~~~~~~~~~~~~~~~~~~~~~qi~~aL~~lH~~~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~--~~~~  163 (309)
T cd07872          86 LDKDLKQYMDDCGNIMSMHNVKIFLYQILRGLAYCHRRKVLHRDLKPQNLLINERGELKLADFGLARAKSVPTK--TYSN  163 (309)
T ss_pred             CCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEECCCCCEEECccccceecCCCcc--cccc
Confidence                                   245889999999999999999999999999999999999999976433221  1233


Q ss_pred             cccCCCcCcccccCC-CccccccceehhhhhhccccCCCCCcCCC
Q 045449          735 TLATIGYMAPEYGTK-GRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       735 ~~gt~~y~aPE~~~~-~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      ..+|+.|+|||++.+ ..++.++||||+||+++++++|..||...
T Consensus       164 ~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~tg~~pf~~~  208 (309)
T cd07872         164 EVVTLWYRPPDVLLGSSEYSTQIDMWGVGCIFFEMASGRPLFPGS  208 (309)
T ss_pred             ccccccccCCHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence            468999999998765 45899999999999999999999998653

Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play

>cd07863 STKc_CDK4 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4

Probab=99.83  E-value=1.9e-21  Score=207.56  Aligned_cols=146  Identities=30%  Similarity=0.372  Sum_probs=116.3

Q ss_pred             CCccceeeccC------------CeEEEEEEehHhh--HHHHHHHHHHHHHHhhc---chhhHHH---------------
Q 045449          630 FSENNLIGIGN------------GMEVAVKVFHQQY--ERALKSFEDECEVRKRI---RHRNLVK---------------  677 (823)
Q Consensus       630 f~~~~~lg~g~------------~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l---~h~niv~---------------  677 (823)
                      |...+.||.|+            ++.||+|.+....  ......+.+|+++++++   .||||++               
T Consensus         2 y~~~~~lg~g~~g~v~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~ni~~~~~~~~~~~~~~~~~   81 (288)
T cd07863           2 YEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVQTNEDGLPLSTVREVALLKRLEAFDHPNIVRLMDVCATSRTDRETK   81 (288)
T ss_pred             ceEeeEEeecCCeEEEEEEECCCCcEEEEEEeccCcCCCCCchHHHHHHHHHHHhhhcCCCCeeeeeeeeccccCCCCce
Confidence            55556677664            5679999886432  11223566777777765   6999886               


Q ss_pred             -------------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCC
Q 045449          678 -------------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGE  726 (823)
Q Consensus       678 -------------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~  726 (823)
                                                     ++.|++.+|.|+|+.+|+||||||+||+++.++.+||+|||+++.....
T Consensus        82 ~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~ivH~dikp~Nili~~~~~~kl~dfg~~~~~~~~  161 (288)
T cd07863          82 VTLVFEHVDQDLRTYLDKVPPPGLPAETIKDLMRQFLRGLDFLHANCIVHRDLKPENILVTSGGQVKLADFGLARIYSCQ  161 (288)
T ss_pred             EEEEEcccccCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEECCCCCEEECccCccccccCc
Confidence                                           3568889999999999999999999999999999999999999876432


Q ss_pred             CccccccccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCC
Q 045449          727 DQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       727 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      ..   .....||..|+|||++.+..++.++||||+||++|++.+|..+|...
T Consensus       162 ~~---~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~~g~~~f~~~  210 (288)
T cd07863         162 MA---LTPVVVTLWYRAPEVLLQSTYATPVDMWSVGCIFAEMFRRKPLFCGN  210 (288)
T ss_pred             cc---CCCccccccccCchHhhCCCCCCcchhhhHHHHHHHHHhCCcCcCCC
Confidence            21   23456899999999998888999999999999999999999888553

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitou

>cd06619 PKc_MKK5 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5

Probab=99.83  E-value=3.2e-21  Score=204.85  Aligned_cols=133  Identities=25%  Similarity=0.288  Sum_probs=115.0

Q ss_pred             CeEEEEEEehHh-hHHHHHHHHHHHHHHhhcchhhHHH------------------------------------HHHHHH
Q 045449          641 GMEVAVKVFHQQ-YERALKSFEDECEVRKRIRHRNLVK------------------------------------IISSSL  683 (823)
Q Consensus       641 ~~~vavK~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~------------------------------------~~~~~l  683 (823)
                      +..||+|++... .....++|.+|++++.+++||||++                                    ++.|++
T Consensus        26 ~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~qi~  105 (279)
T cd06619          26 RRILAVKVIPLDITVELQKQIMSELEILYKCDSPYIIGFYGAFFVENRISICTEFMDGGSLDVYRKIPEHVLGRIAVAVV  105 (279)
T ss_pred             CcEEEEEEEecCCChHHHHHHHHHHHHHHhCCCCCeeeEEEEEEECCEEEEEEecCCCCChHHhhcCCHHHHHHHHHHHH
Confidence            577999998644 2344567999999999999999998                                    357889


Q ss_pred             HHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccCCCccccccceehhhh
Q 045449          684 EYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGI  763 (823)
Q Consensus       684 ~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gv  763 (823)
                      .+|+|+|+.+|+|+||||+||+++.++.+||+|||++.......    .....||..|+|||++.+..++.++|||||||
T Consensus       106 ~~l~~lH~~~i~H~dlkp~Nill~~~~~~~l~dfg~~~~~~~~~----~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~  181 (279)
T cd06619         106 KGLTYLWSLKILHRDVKPSNMLVNTRGQVKLCDFGVSTQLVNSI----AKTYVGTNAYMAPERISGEQYGIHSDVWSLGI  181 (279)
T ss_pred             HHHHHHHHCCEeeCCCCHHHEEECCCCCEEEeeCCcceeccccc----ccCCCCChhhcCceeecCCCCCCcchHHHHHH
Confidence            99999999999999999999999999999999999998654321    23457899999999999889999999999999


Q ss_pred             hhccccCCCCCcCC
Q 045449          764 ISGGKETRSMTVGE  777 (823)
Q Consensus       764 v~~~~~~~~~~~~~  777 (823)
                      ++|++.+|..||..
T Consensus       182 ~l~~l~~g~~pf~~  195 (279)
T cd06619         182 SFMELALGRFPYPQ  195 (279)
T ss_pred             HHHHHHhCCCCchh
Confidence            99999999999865

Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that p

>cd05035 PTKc_Axl_like Catalytic Domain of Axl-like Protein Tyrosine Kinases

Probab=99.83  E-value=3.5e-21  Score=203.60  Aligned_cols=138  Identities=22%  Similarity=0.308  Sum_probs=113.5

Q ss_pred             CeEEEEEEehHhh--HHHHHHHHHHHHHHhhcchhhHHH-----------------------------------------
Q 045449          641 GMEVAVKVFHQQY--ERALKSFEDECEVRKRIRHRNLVK-----------------------------------------  677 (823)
Q Consensus       641 ~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~-----------------------------------------  677 (823)
                      +..||||++....  ....+.|.+|++.+++++|+||++                                         
T Consensus        27 ~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~~v~e~~~~~~l~~~l~~~~~~~~  106 (273)
T cd05035          27 QLKVAVKTMKLDIHTYSEIEEFLSEAACMKDFDHPNVMKLIGVCFEASSLQKIPKPMVILPFMKHGDLHSFLLYSRLGGL  106 (273)
T ss_pred             cceEEEEEeccCcCCHHHHHHHHHHHHHHHhCCCCCeeeEEeeeccCCccccCcccEEEEeccCCCCHHHHHHHhhccCC
Confidence            3669999987432  344578999999999999999986                                         


Q ss_pred             -----------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccc
Q 045449          678 -----------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEY  746 (823)
Q Consensus       678 -----------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~  746 (823)
                                 ++.|++.+|.|+|+.+++||||||+||++++++.+||+|||+++...............++..|+|||+
T Consensus       107 ~~~~~~~~~~~~~~~i~~aL~~lH~~~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~pe~  186 (273)
T cd05035         107 PEKLPLQTLLKFMVDIALGMEYLSNRNFIHRDLAARNCMLREDMTVCVADFGLSKKIYSGDYYRQGRIAKMPVKWIAIES  186 (273)
T ss_pred             cccCCHHHHHHHHHHHHHHHHHHHhCCeeccccchheEEECCCCeEEECCccceeeccccccccccccccCCccccCHhh
Confidence                       246788899999999999999999999999999999999999987654433222222345678999999


Q ss_pred             cCCCccccccceehhhhhhccccC-CCCCcCCC
Q 045449          747 GTKGRVSTRGDVCSFGIISGGKET-RSMTVGET  778 (823)
Q Consensus       747 ~~~~~~~~~~Dv~S~Gvv~~~~~~-~~~~~~~~  778 (823)
                      +.+..++.++|||||||+++++.+ |..||.+.
T Consensus       187 ~~~~~~~~~~Dv~SlG~il~el~~~g~~p~~~~  219 (273)
T cd05035         187 LADRVYTSKSDVWAFGVTMWEIATRGQTPYPGV  219 (273)
T ss_pred             cccCCCCcccchHHHHHHHHHHHhCCCCCCCCC
Confidence            988889999999999999999998 77887654

Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellu

>PHA03210 serine/threonine kinase US3; Provisional

Probab=99.83  E-value=1.5e-21  Score=223.68  Aligned_cols=117  Identities=24%  Similarity=0.296  Sum_probs=101.5

Q ss_pred             HHHHHHHHHHHhhcchhhHHH--------------------------------------------HHHHHHHHhhhcCCC
Q 045449          657 LKSFEDECEVRKRIRHRNLVK--------------------------------------------IISSSLEYLHFGHSI  692 (823)
Q Consensus       657 ~~~~~~E~~~l~~l~h~niv~--------------------------------------------~~~~~l~~L~~~h~~  692 (823)
                      ...+.+|++++++++|||||+                                            ++.|++.+|+|+|+.
T Consensus       207 ~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~lv~e~~~~~l~~~l~~~~~~~~~~~~~~~~~~i~~ql~~aL~yLH~~  286 (501)
T PHA03210        207 AIQLENEILALGRLNHENILKIEEILRSEANTYMITQKYDFDLYSFMYDEAFDWKDRPLLKQTRAIMKQLLCAVEYIHDK  286 (501)
T ss_pred             HHHHHHHHHHHHhCCCCCcCcEeEEEEECCeeEEEEeccccCHHHHHhhccccccccccHHHHHHHHHHHHHHHHHHHhC
Confidence            456889999999999999987                                            345788899999999


Q ss_pred             CEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccCCCccccccceehhhhhhccccCCC
Q 045449          693 PIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRS  772 (823)
Q Consensus       693 ~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~  772 (823)
                      +|+||||||+|||++.++.+||+|||+++.+..... ......+||+.|+|||++.+..++.++|||||||++|+++++.
T Consensus       287 gIiHrDLKP~NILl~~~~~vkL~DFGla~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~ell~~~  365 (501)
T PHA03210        287 KLIHRDIKLENIFLNCDGKIVLGDFGTAMPFEKERE-AFDYGWVGTVATNSPEILAGDGYCEITDIWSCGLILLDMLSHD  365 (501)
T ss_pred             CeecCCCCHHHEEECCCCCEEEEeCCCceecCcccc-cccccccCCcCCCCchhhcCCCCCcHHHHHHHHHHHHHHHHCC
Confidence            999999999999999999999999999987643322 1223467999999999999999999999999999999999887


Q ss_pred             CC
Q 045449          773 MT  774 (823)
Q Consensus       773 ~~  774 (823)
                      .+
T Consensus       366 ~~  367 (501)
T PHA03210        366 FC  367 (501)
T ss_pred             CC
Confidence            54

>cd05094 PTKc_TrkC Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C

Probab=99.83  E-value=2.5e-21  Score=207.04  Aligned_cols=137  Identities=28%  Similarity=0.356  Sum_probs=114.7

Q ss_pred             eEEEEEEehHhhHHHHHHHHHHHHHHhhcchhhHHH--------------------------------------------
Q 045449          642 MEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVK--------------------------------------------  677 (823)
Q Consensus       642 ~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~--------------------------------------------  677 (823)
                      ..||+|.+........+.|.+|++++++++|+||++                                            
T Consensus        36 ~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~  115 (291)
T cd05094          36 MLVAVKALKDPTLAARKDFQREAELLTNLQHEHIVKFYGVCGDGDPLIMVFEYMKHGDLNKFLRAHGPDAMILVDGQPRQ  115 (291)
T ss_pred             eeeEEEecCCccHHHHHHHHHHHHHHhcCCCCCcceEEEEEccCCceEEEEecCCCCcHHHHHHhcCccccccccccccc
Confidence            458889887666666678999999999999999988                                            


Q ss_pred             ------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCccc
Q 045449          678 ------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPE  745 (823)
Q Consensus       678 ------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE  745 (823)
                                  ++.|++.++.|+|+.+|+||||||+||+++.++.+||+|||+++...............++..|+|||
T Consensus       116 ~~~~~~~~~~~~i~~~i~~al~~lH~~~i~H~dlkp~Nil~~~~~~~~l~dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE  195 (291)
T cd05094         116 AKGELGLSQMLHIASQIASGMVYLASQHFVHRDLATRNCLVGANLLVKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPE  195 (291)
T ss_pred             CcCCCCHHHHHHHHHHHHHHHHHHHhCCeeecccCcceEEEccCCcEEECCCCcccccCCCceeecCCCCCcceeecChH
Confidence                        12467888999999999999999999999999999999999998654433222233456788999999


Q ss_pred             ccCCCccccccceehhhhhhccccC-CCCCcCCC
Q 045449          746 YGTKGRVSTRGDVCSFGIISGGKET-RSMTVGET  778 (823)
Q Consensus       746 ~~~~~~~~~~~Dv~S~Gvv~~~~~~-~~~~~~~~  778 (823)
                      ++.+..++.++|||||||+++++++ |..||...
T Consensus       196 ~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~  229 (291)
T cd05094         196 SIMYRKFTTESDVWSFGVILWEIFTYGKQPWFQL  229 (291)
T ss_pred             HhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCC
Confidence            9988889999999999999999998 89887654

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some n

>cd05055 PTKc_PDGFR Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors

Probab=99.83  E-value=2.2e-21  Score=208.55  Aligned_cols=152  Identities=24%  Similarity=0.300  Sum_probs=121.2

Q ss_pred             ccCCccceeeccC-----------------CeEEEEEEehHhh-HHHHHHHHHHHHHHhhc-chhhHHH-----------
Q 045449          628 DRFSENNLIGIGN-----------------GMEVAVKVFHQQY-ERALKSFEDECEVRKRI-RHRNLVK-----------  677 (823)
Q Consensus       628 ~~f~~~~~lg~g~-----------------~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l-~h~niv~-----------  677 (823)
                      ++|...+.||.|+                 +..||||+++... ....+.+.+|+++++++ +|+||++           
T Consensus        35 ~~~~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~  114 (302)
T cd05055          35 NNLSFGKTLGAGAFGKVVEATAYGLSKSDAVMKVAVKMLKPTAHSSEREALMSELKIMSHLGNHENIVNLLGACTIGGPI  114 (302)
T ss_pred             HHeEEcceeeccCCeeEEEEEEecCCCCCceeEEEEEecCccCChHHHHHHHHHHHHHHhccCCCCcceEEEEEecCCce
Confidence            3566666777664                 2358999886542 34456899999999999 7999998           


Q ss_pred             -------------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCC
Q 045449          678 -------------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGE  726 (823)
Q Consensus       678 -------------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~  726 (823)
                                                     ++.+++.+|.|+|+.+|+||||||+||+++.++.+|++|||+++.....
T Consensus       115 ~lv~e~~~~~~L~~~i~~~~~~~l~~~~~~~i~~~i~~~l~~lH~~~ivH~dlkp~Nil~~~~~~~~l~dfg~~~~~~~~  194 (302)
T cd05055         115 LVITEYCCYGDLLNFLRRKRESFLTLEDLLSFSYQVAKGMAFLASKNCIHRDLAARNVLLTHGKIVKICDFGLARDIMND  194 (302)
T ss_pred             EEEEEcCCCCcHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCeehhhhccceEEEcCCCeEEECCCcccccccCC
Confidence                                           2457888899999999999999999999999999999999999866433


Q ss_pred             CccccccccccCCCcCcccccCCCccccccceehhhhhhccccC-CCCCcCCCc
Q 045449          727 DQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKET-RSMTVGETC  779 (823)
Q Consensus       727 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~-~~~~~~~~~  779 (823)
                      ..........++..|+|||++.++.++.++||||+||+++++++ |..||....
T Consensus       195 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslGvil~el~t~g~~p~~~~~  248 (302)
T cd05055         195 SNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGILLWEIFSLGSNPYPGMP  248 (302)
T ss_pred             CceeecCCCCcccccCCHhhhccCCCCcHhHHHHHHHHHHHHHhCCCCCcCCCC
Confidence            22111223346788999999988889999999999999999997 888876543

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to recept

>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]

Probab=99.83  E-value=9.6e-22  Score=205.91  Aligned_cols=132  Identities=26%  Similarity=0.293  Sum_probs=115.0

Q ss_pred             EEEEEehHhh---HHHHHHHHHHHHHHhhcchhhHHH----------------------------------------HHH
Q 045449          644 VAVKVFHQQY---ERALKSFEDECEVRKRIRHRNLVK----------------------------------------IIS  680 (823)
Q Consensus       644 vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~----------------------------------------~~~  680 (823)
                      +|+|++++..   .+..+....|-.+|...+.|.||+                                        ++|
T Consensus       448 fAlKilkK~hIVdtkQqeHv~sEr~Im~~~~s~fIvrLYrTfrd~kyvYmLmEaClGGElWTiLrdRg~Fdd~tarF~~a  527 (732)
T KOG0614|consen  448 FALKILKKKHIVDTKQQEHVFSERNIMMECRSDFIVRLYRTFRDSKYVYMLMEACLGGELWTILRDRGSFDDYTARFYVA  527 (732)
T ss_pred             HHHHHHhHhhccchhHHHHHHhHHHHHHhcCchHHHHHHHHhccchhhhhhHHhhcCchhhhhhhhcCCcccchhhhhHH
Confidence            3455554332   344567889999999999999999                                        357


Q ss_pred             HHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccCCCccccccceeh
Q 045449          681 SSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCS  760 (823)
Q Consensus       681 ~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S  760 (823)
                      -+++++.|+|+.+||.||+||+|.++|.+|.+||.|||+|+.+....   ...+++|||.|.|||++.....+..+|.||
T Consensus       528 cv~EAfeYLH~k~iIYRDLKPENllLd~~Gy~KLVDFGFAKki~~g~---KTwTFcGTpEYVAPEIILnKGHD~avDyWa  604 (732)
T KOG0614|consen  528 CVLEAFEYLHRKGIIYRDLKPENLLLDNRGYLKLVDFGFAKKIGSGR---KTWTFCGTPEYVAPEIILNKGHDRAVDYWA  604 (732)
T ss_pred             HHHHHHHHHHhcCceeccCChhheeeccCCceEEeehhhHHHhccCC---ceeeecCCcccccchhhhccCcchhhHHHH
Confidence            78899999999999999999999999999999999999999986554   346789999999999999999999999999


Q ss_pred             hhhhhccccCCCCCcCCC
Q 045449          761 FGIISGGKETRSMTVGET  778 (823)
Q Consensus       761 ~Gvv~~~~~~~~~~~~~~  778 (823)
                      +|+++||+++|..||.+.
T Consensus       605 LGIli~ELL~G~pPFs~~  622 (732)
T KOG0614|consen  605 LGILIYELLTGSPPFSGV  622 (732)
T ss_pred             HHHHHHHHHcCCCCCCCC
Confidence            999999999999999875

>cd07867 STKc_CDC2L6 Catalytic domain of Serine/Threonine Kinase, Cell Division Cycle 2-like 6

Probab=99.83  E-value=2.2e-21  Score=210.16  Aligned_cols=136  Identities=24%  Similarity=0.300  Sum_probs=110.3

Q ss_pred             CeEEEEEEehHhhHHHHHHHHHHHHHHhhcchhhHHH-------------------------------------------
Q 045449          641 GMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVK-------------------------------------------  677 (823)
Q Consensus       641 ~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~-------------------------------------------  677 (823)
                      +..||+|.+....  ....+.+|++++++++||||++                                           
T Consensus        28 ~~~~a~k~~~~~~--~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~l  105 (317)
T cd07867          28 EKEYALKQIEGTG--ISMSACREIALLRELKHPNVIALQKVFLSHSDRKVWLLFDYAEHDLWHIIKFHRASKANKKPMQL  105 (317)
T ss_pred             cceEEEEEecCCC--CcHHHHHHHHHHHhCCCCCeeeEEEEEeccCCCeEEEEEeeeCCcHHHHHHhhhccccCCCCccC
Confidence            4678999886442  2246789999999999999986                                           


Q ss_pred             -------HHHHHHHHhhhcCCCCEEeccCCCCCEEe----CCCCcEEEeecccccccCCCCc-cccccccccCCCcCccc
Q 045449          678 -------IISSSLEYLHFGHSIPIIHCDLKPSNVLL----DEDMVAHISDFGIAKLLSGEDQ-LSKQTQTLATIGYMAPE  745 (823)
Q Consensus       678 -------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl----~~~~~~kl~DfGla~~~~~~~~-~~~~~~~~gt~~y~aPE  745 (823)
                             ++.|++++|+|+|+.+|+||||||+||++    +.++.+||+|||+++....... ........||+.|+|||
T Consensus       106 ~~~~~~~i~~qi~~aL~~lH~~~ivH~Dlkp~Nil~~~~~~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~t~~y~aPE  185 (317)
T cd07867         106 PRSMVKSLLYQILDGIHYLHANWVLHRDLKPANILVMGEGPERGRVKIADMGFARLFNSPLKPLADLDPVVVTFWYRAPE  185 (317)
T ss_pred             CHHHHHHHHHHHHHHHHHHHhCCEEcCCCCHHHEEEccCCCCCCcEEEeeccceeccCCCcccccccCcceecccccCcH
Confidence                   24588899999999999999999999999    4567999999999987643322 11223457899999999


Q ss_pred             ccCCC-ccccccceehhhhhhccccCCCCCcCCC
Q 045449          746 YGTKG-RVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       746 ~~~~~-~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      ++.+. .++.++||||+||+++++++|..||...
T Consensus       186 ~~~~~~~~~~~~DiwSlG~il~el~tg~~~f~~~  219 (317)
T cd07867         186 LLLGARHYTKAIDIWAIGCIFAELLTSEPIFHCR  219 (317)
T ss_pred             HhcCCCccCcHHHHHhHHHHHHHHHhCCCCcccc
Confidence            88764 5799999999999999999999998653

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 6 (CDC2L6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L6 is also called CDK8-like and was previously referred to as CDK11. However, this is a confusing nomenclature as CDC2L6 is distinct from CDC2L1, which is represented by the two protein products from its gene, called CDK11(p110) and CDK11(p58), as well as

>cd06637 STKc_TNIK Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase

Probab=99.83  E-value=8.8e-22  Score=208.19  Aligned_cols=151  Identities=26%  Similarity=0.351  Sum_probs=120.8

Q ss_pred             HHhccCCccceeeccC------------CeEEEEEEehHhhHHHHHHHHHHHHHHhhc-chhhHHH--------------
Q 045449          625 RATDRFSENNLIGIGN------------GMEVAVKVFHQQYERALKSFEDECEVRKRI-RHRNLVK--------------  677 (823)
Q Consensus       625 ~at~~f~~~~~lg~g~------------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~--------------  677 (823)
                      .+++.|+..+.+|.|+            ++.||+|++.... .....+.+|++++.++ +|+||++              
T Consensus         3 ~~~~~y~~~~~lg~g~~g~vy~~~~~~~~~~~aik~~~~~~-~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~~~   81 (272)
T cd06637           3 DPAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTG-DEEEEIKQEINMLKKYSHHRNIATYYGAFIKKNPPGMD   81 (272)
T ss_pred             ChhhhhhHHHheeecCCeEEEEEEEcCCCcEEEEEEEEcCC-ccHHHHHHHHHHHHHhcCCCCeeeEeeEEeecCCCCCC
Confidence            3455666666666664            5678999986443 2335788999999998 7999997              


Q ss_pred             ----------------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeeccccccc
Q 045449          678 ----------------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLL  723 (823)
Q Consensus       678 ----------------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~  723 (823)
                                                        ++.|++.+++|+|+.+|+|||+||+||++++++.+||+|||+++..
T Consensus        82 ~~~~iv~e~~~~~~L~~~l~~~~~~~l~~~~~~~~~~qi~~~l~~LH~~~ivh~dl~~~nili~~~~~~~l~Dfg~~~~~  161 (272)
T cd06637          82 DQLWLVMEFCGAGSVTDLIKNTKGNTLKEEWIAYICREILRGLSHLHQHKVIHRDIKGQNVLLTENAEVKLVDFGVSAQL  161 (272)
T ss_pred             cEEEEEEEcCCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHCCCccCCCCHHHEEECCCCCEEEccCCCceec
Confidence                                              2468888999999999999999999999999999999999999865


Q ss_pred             CCCCccccccccccCCCcCcccccC-----CCccccccceehhhhhhccccCCCCCcCCC
Q 045449          724 SGEDQLSKQTQTLATIGYMAPEYGT-----KGRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       724 ~~~~~~~~~~~~~gt~~y~aPE~~~-----~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      ....  .......|++.|+|||++.     ...++.++||||+||++|++++|..||.+.
T Consensus       162 ~~~~--~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~Dv~slGv~l~el~~g~~p~~~~  219 (272)
T cd06637         162 DRTV--GRRNTFIGTPYWMAPEVIACDENPDATYDFKSDLWSLGITAIEMAEGAPPLCDM  219 (272)
T ss_pred             cccc--ccCCcccccccccCHhHhccccCcCCCCCchhhHHHHHHHHHHHHhCCCCcccc
Confidence            3321  1233457899999999876     345888999999999999999999998654

Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activ

>KOG0669 consensus Cyclin T-dependent kinase CDK9 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.83  E-value=8.5e-22  Score=189.39  Aligned_cols=157  Identities=24%  Similarity=0.329  Sum_probs=123.5

Q ss_pred             cccCHHHHHHHhccCCccceeeccCCeEEEEEEehHhh--HHHHHHHHHHHHHHhhcchhhHHHH---------------
Q 045449          616 RRFSYHELLRATDRFSENNLIGIGNGMEVAVKVFHQQY--ERALKSFEDECEVRKRIRHRNLVKI---------------  678 (823)
Q Consensus       616 ~~~~~~~l~~at~~f~~~~~lg~g~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~~---------------  678 (823)
                      ...++.|+.+|...-.         |+.||+|++-.+.  +.......+|++++..++|+|++.+               
T Consensus        26 gqGtfgeVFkAr~~n~---------~kkvalkkvlmeneKeGfpitalreikiL~~lkHenv~nliEic~tk~Tp~~r~r   96 (376)
T KOG0669|consen   26 GQGTFGEVFKARSKNT---------GKKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKATPTNRDR   96 (376)
T ss_pred             CCchHHHHHHHhhcCc---------cchhHHHHHHHhccccCCcHHHHHHHHHHHHhcchhHHHHHHHHhhccCCccccc
Confidence            4566778887753221         4568888765432  2233567899999999999999983               


Q ss_pred             ---------------------------------HHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCC
Q 045449          679 ---------------------------------ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSG  725 (823)
Q Consensus       679 ---------------------------------~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~  725 (823)
                                                       +.+.+++|.|+|+..|+|||+|++|+|++.++.+||+|||+||.+..
T Consensus        97 ~t~ylVf~~cehDLaGlLsn~~vr~sls~Ikk~Mk~Lm~GL~~iHr~kilHRDmKaaNvLIt~dgilklADFGlar~fs~  176 (376)
T KOG0669|consen   97 ATFYLVFDFCEHDLAGLLSNRKVRFSLSEIKKVMKGLMNGLYYIHRNKILHRDMKAANVLITKDGILKLADFGLARAFST  176 (376)
T ss_pred             ceeeeeHHHhhhhHHHHhcCccccccHHHHHHHHHHHHHHHHHHHHhhHHhhcccHhhEEEcCCceEEeeccccccceec
Confidence                                             34678899999999999999999999999999999999999987654


Q ss_pred             CCccc--cccccccCCCcCcccccCCC-ccccccceehhhhhhccccCCCCCcCCCccc
Q 045449          726 EDQLS--KQTQTLATIGYMAPEYGTKG-RVSTRGDVCSFGIISGGKETRSMTVGETCTP  781 (823)
Q Consensus       726 ~~~~~--~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~~~~  781 (823)
                      .+...  ..+..+.|.+|++||.+.+. .|+++.|||..|||+++|.++...+++..++
T Consensus       177 ~~n~~kprytnrvvTLwYrppEllLG~r~yg~~iDiWgAgCimaeMwtrspimqgnteq  235 (376)
T KOG0669|consen  177 SKNVVKPRYTNRVVTLWYRPPELLLGDREYGPPIDIWGAGCIMAEMWTRSPIMQGNTEQ  235 (376)
T ss_pred             ccccCCCCcccceeeeecCCHHHhhcccccCCcchhHhHHHHHHHHHccCccccCChHH
Confidence            43322  23456679999999988765 5999999999999999999999988775433

>cd05630 STKc_GRK6 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6

Probab=99.83  E-value=5.2e-21  Score=203.83  Aligned_cols=146  Identities=24%  Similarity=0.301  Sum_probs=120.3

Q ss_pred             CCccceeeccC------------CeEEEEEEehHhh---HHHHHHHHHHHHHHhhcchhhHHH-----------------
Q 045449          630 FSENNLIGIGN------------GMEVAVKVFHQQY---ERALKSFEDECEVRKRIRHRNLVK-----------------  677 (823)
Q Consensus       630 f~~~~~lg~g~------------~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~-----------------  677 (823)
                      |+..+.||.|+            ++.||||.+....   ....+.+.+|+.++++++|++++.                 
T Consensus         2 f~~~~~ig~G~~g~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~~~~~lv~e~   81 (285)
T cd05630           2 FRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGESMALNEKQILEKVNSRFVVSLAYAYETKDALCLVLTL   81 (285)
T ss_pred             ceeeEEeecCCCeEEEEEEEcCCCceEEEEEEehhhccchHHHHHHHHHHHHHHhCCCCCeeeeeEEEecCCEEEEEEEe
Confidence            44456666664            5679999886542   233456788999999999999997                 


Q ss_pred             -------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccc
Q 045449          678 -------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQ  732 (823)
Q Consensus       678 -------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~  732 (823)
                                               ++.|++.+|.|+|+.+|+||||||+||+++.++.++|+|||++........   .
T Consensus        82 ~~g~~L~~~l~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~~iiH~dikp~Nil~~~~~~~~l~Dfg~~~~~~~~~~---~  158 (285)
T cd05630          82 MNGGDLKFHIYHMGEAGFEEGRAVFYAAEICCGLEDLHQERIVYRDLKPENILLDDHGHIRISDLGLAVHVPEGQT---I  158 (285)
T ss_pred             cCCCcHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhCCEEeCCCCHHHEEECCCCCEEEeeccceeecCCCcc---c
Confidence                                     356788999999999999999999999999999999999999976543221   2


Q ss_pred             cccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCC
Q 045449          733 TQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       733 ~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      ....||..|+|||++.+..++.++||||+||+++++++|..||...
T Consensus       159 ~~~~g~~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~~g~~Pf~~~  204 (285)
T cd05630         159 KGRVGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIAGQSPFQQR  204 (285)
T ss_pred             cCCCCCccccChHHHcCCCCCCccccHHHHHHHHHHHhCCCCCCCC
Confidence            2347899999999999889999999999999999999999999764

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as

>cd05075 PTKc_Axl Catalytic domain of the Protein Tyrosine Kinase, Axl

Probab=99.83  E-value=3.1e-21  Score=204.01  Aligned_cols=136  Identities=24%  Similarity=0.326  Sum_probs=111.7

Q ss_pred             EEEEEEehHh--hHHHHHHHHHHHHHHhhcchhhHHH-------------------------------------------
Q 045449          643 EVAVKVFHQQ--YERALKSFEDECEVRKRIRHRNLVK-------------------------------------------  677 (823)
Q Consensus       643 ~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~-------------------------------------------  677 (823)
                      .||||.+...  .....+.|.+|++++++++|+||++                                           
T Consensus        28 ~~a~k~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~~v~e~~~~~~l~~~~~~~~~~~~~~  107 (272)
T cd05075          28 KVAVKTMKIAICTRSEMEDFLSEAVCMKEFDHPNVMRLIGVCLQTVESEGYPSPVVILPFMKHGDLHSFLLYSRLGDCPQ  107 (272)
T ss_pred             eEEEEecccCcCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEccCCcccCCCCcEEEEEeCCCCcHHHHHHHhcccCCcc
Confidence            5899988643  2444578999999999999999997                                           


Q ss_pred             ---------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccC
Q 045449          678 ---------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGT  748 (823)
Q Consensus       678 ---------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~  748 (823)
                               ++.|++++|.|+|+.+|+||||||+||+++.++.+||+|||+++...............+++.|+|||+..
T Consensus       108 ~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~  187 (272)
T cd05075         108 YLPTQMLVKFMTDIASGMEYLSSKSFIHRDLAARNCMLNENMNVCVADFGLSKKIYNGDYYRQGRIAKMPVKWIAIESLA  187 (272)
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHHCCeeccccchhheEEcCCCCEEECCCCcccccCcccceecCCcccCCcccCCHHHcc
Confidence                     23577888999999999999999999999999999999999998764332211122234677899999999


Q ss_pred             CCccccccceehhhhhhccccC-CCCCcCCC
Q 045449          749 KGRVSTRGDVCSFGIISGGKET-RSMTVGET  778 (823)
Q Consensus       749 ~~~~~~~~Dv~S~Gvv~~~~~~-~~~~~~~~  778 (823)
                      +..++.++|||||||+++++.+ |..||...
T Consensus       188 ~~~~~~~~Di~slG~il~el~~~g~~p~~~~  218 (272)
T cd05075         188 DRVYTTKSDVWSFGVTMWEIATRGQTPYPGV  218 (272)
T ss_pred             CCCcChHHHHHHHHHHHHHHHcCCCCCCCCC
Confidence            8889999999999999999998 78888654

Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transfor

>cd05068 PTKc_Frk_like Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

Probab=99.83  E-value=3.2e-21  Score=202.66  Aligned_cols=150  Identities=26%  Similarity=0.374  Sum_probs=119.9

Q ss_pred             ccCCccceeeccC-----------CeEEEEEEehHhhHHHHHHHHHHHHHHhhcchhhHHH-------------------
Q 045449          628 DRFSENNLIGIGN-----------GMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVK-------------------  677 (823)
Q Consensus       628 ~~f~~~~~lg~g~-----------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~-------------------  677 (823)
                      ++|...+.+|.|+           +..||||.++... ...++|.+|++++++++|+||++                   
T Consensus         6 ~~~~~~~~lg~g~~~~v~~~~~~~~~~v~iK~~~~~~-~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~   84 (261)
T cd05068           6 TSIQLLRKLGAGQFGEVWEGLWNNTTPVAVKTLKPGT-MDPKDFLAEAQIMKKLRHPKLIQLYAVCTLEEPIYIVTELMK   84 (261)
T ss_pred             hheeeEEEecccCCccEEEEEecCCeEEEEEeeCCCc-ccHHHHHHHHHHHHHCCCCCccceeEEEecCCCeeeeeeccc
Confidence            4466666777664           3569999987543 23467999999999999999998                   


Q ss_pred             -----------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccc
Q 045449          678 -----------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQ  734 (823)
Q Consensus       678 -----------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~  734 (823)
                                             ++.+++.+++++|+.+++||||||+||+++.++.+||+|||+++....... .....
T Consensus        85 ~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~~l~dfg~~~~~~~~~~-~~~~~  163 (261)
T cd05068          85 YGSLLEYLQGGAGRALKLPQLIDMAAQVASGMAYLEAQNYIHRDLAARNVLVGENNICKVADFGLARVIKEDIY-EAREG  163 (261)
T ss_pred             CCcHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCeeeccCCcceEEEcCCCCEEECCcceEEEccCCcc-cccCC
Confidence                                   346788899999999999999999999999999999999999987653211 11112


Q ss_pred             cccCCCcCcccccCCCccccccceehhhhhhccccC-CCCCcCCCc
Q 045449          735 TLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKET-RSMTVGETC  779 (823)
Q Consensus       735 ~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~-~~~~~~~~~  779 (823)
                      ...+..|+|||+..+..++.++|||||||+++++.+ |+.||.+..
T Consensus       164 ~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~  209 (261)
T cd05068         164 AKFPIKWTAPEAALYNRFSIKSDVWSFGILLTEIVTYGRMPYPGMT  209 (261)
T ss_pred             CcCceeccCccccccCCCCchhhHHHHHHHHHHHHhcCCCCCCCCC
Confidence            223468999999998899999999999999999998 888886643

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins a

>KOG0662 consensus Cyclin-dependent kinase CDK5 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=99.83  E-value=9.6e-22  Score=179.59  Aligned_cols=135  Identities=26%  Similarity=0.299  Sum_probs=111.9

Q ss_pred             CeEEEEEEehHhh--HHHHHHHHHHHHHHhhcchhhHHH----------------------------------------H
Q 045449          641 GMEVAVKVFHQQY--ERALKSFEDECEVRKRIRHRNLVK----------------------------------------I  678 (823)
Q Consensus       641 ~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~----------------------------------------~  678 (823)
                      ++.||+|+++.+.  +.......+|+-+++.++|+|||+                                        +
T Consensus        27 ~eivalkrvrlddddegvpssalreicllkelkhknivrl~dvlhsdkkltlvfe~cdqdlkkyfdslng~~d~~~~rsf  106 (292)
T KOG0662|consen   27 HEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLVFEFCDQDLKKYFDSLNGDLDPEIVRSF  106 (292)
T ss_pred             cceEEEEEEeccCCCCCCcHHHHHHHHHHHHhhhcceeehhhhhccCceeEEeHHHhhHHHHHHHHhcCCcCCHHHHHHH
Confidence            4679999987443  344467889999999999999998                                        3


Q ss_pred             HHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccCCCc-cccccc
Q 045449          679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGR-VSTRGD  757 (823)
Q Consensus       679 ~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~-~~~~~D  757 (823)
                      +.|.+.+|.++|++.+.|||+||+|.|+..+|+.|++|||+||.+.-.  ....+..+-|.+|++|.++.+.. |++..|
T Consensus       107 mlqllrgl~fchshnvlhrdlkpqnllin~ngelkladfglarafgip--vrcysaevvtlwyrppdvlfgakly~tsid  184 (292)
T KOG0662|consen  107 MLQLLRGLGFCHSHNVLHRDLKPQNLLINRNGELKLADFGLARAFGIP--VRCYSAEVVTLWYRPPDVLFGAKLYSTSID  184 (292)
T ss_pred             HHHHHhhhhhhhhhhhhhccCCcceEEeccCCcEEecccchhhhcCCc--eEeeeceeeeeeccCcceeeeeehhccchH
Confidence            568999999999999999999999999999999999999999976433  23445567899999999988765 899999


Q ss_pred             eehhhhhhccccC-CCCCcCC
Q 045449          758 VCSFGIISGGKET-RSMTVGE  777 (823)
Q Consensus       758 v~S~Gvv~~~~~~-~~~~~~~  777 (823)
                      +||.||++.|+.- |+..|.+
T Consensus       185 mwsagcifaelanagrplfpg  205 (292)
T KOG0662|consen  185 MWSAGCIFAELANAGRPLFPG  205 (292)
T ss_pred             hhhcchHHHHHhhcCCCCCCC
Confidence            9999999988865 4443443

>cd05052 PTKc_Abl Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

Probab=99.83  E-value=4.2e-21  Score=201.99  Aligned_cols=136  Identities=26%  Similarity=0.414  Sum_probs=112.7

Q ss_pred             CeEEEEEEehHhhHHHHHHHHHHHHHHhhcchhhHHH------------------------------------------H
Q 045449          641 GMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVK------------------------------------------I  678 (823)
Q Consensus       641 ~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~------------------------------------------~  678 (823)
                      +..||+|++.... ...+++.+|++++++++|+||++                                          +
T Consensus        31 ~~~~~~K~~~~~~-~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~l~~~~~~~~  109 (263)
T cd05052          31 SLTVAVKTLKEDT-MEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYM  109 (263)
T ss_pred             CceEEEEEecCCc-hHHHHHHHHHHHHHhCCCCChhheEEEEcCCCCcEEEEEeCCCCcHHHHHHhCCCCCCCHHHHHHH
Confidence            5679999987543 33567999999999999999999                                          2


Q ss_pred             HHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccCCCccccccce
Q 045449          679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDV  758 (823)
Q Consensus       679 ~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv  758 (823)
                      +.|++++|.|+|+.+++||||||+||++++++.+||+|||+++....... .......++..|+|||++.+..++.++||
T Consensus       110 ~~ql~~~l~~lH~~~i~H~dlkp~nil~~~~~~~kl~df~~~~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv  188 (263)
T cd05052         110 ATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTY-TAHAGAKFPIKWTAPESLAYNKFSIKSDV  188 (263)
T ss_pred             HHHHHHHHHHHHhCCEeecccCcceEEEcCCCcEEeCCCcccccccccee-eccCCCCCccccCCHHHhccCCCCchhHH
Confidence            56888999999999999999999999999999999999999987643321 11122234678999999988899999999


Q ss_pred             ehhhhhhccccC-CCCCcCCC
Q 045449          759 CSFGIISGGKET-RSMTVGET  778 (823)
Q Consensus       759 ~S~Gvv~~~~~~-~~~~~~~~  778 (823)
                      |||||++|++.+ |..|+...
T Consensus       189 ~slG~il~el~t~g~~p~~~~  209 (263)
T cd05052         189 WAFGVLLWEIATYGMSPYPGI  209 (263)
T ss_pred             HHHHHHHHHHHcCCCCCCCCC
Confidence            999999999997 88887653

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays

>cd05064 PTKc_EphR_A10 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A10

Probab=99.83  E-value=2.6e-21  Score=204.04  Aligned_cols=138  Identities=20%  Similarity=0.248  Sum_probs=111.8

Q ss_pred             CeEEEEEEehHhh-HHHHHHHHHHHHHHhhcchhhHHH-----------------------------------------H
Q 045449          641 GMEVAVKVFHQQY-ERALKSFEDECEVRKRIRHRNLVK-----------------------------------------I  678 (823)
Q Consensus       641 ~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~-----------------------------------------~  678 (823)
                      +..||+|+++... ....+.|.+|+.++++++||||++                                         +
T Consensus        33 ~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~l~~~~~~~~  112 (266)
T cd05064          33 ELPVAIHTLRAGCSDKQRRGFLAEALTLGQFDHSNIVRLEGVITRGNTMMIVTEYMSNGALDSFLRKHEGQLVAGQLMGM  112 (266)
T ss_pred             eeeEEEEecCCCCCHHHHHHHHHHHHHHhcCCCCCcCeEEEEEecCCCcEEEEEeCCCCcHHHHHHhCCCCCCHHHHHHH
Confidence            4579999987543 344568999999999999999998                                         3


Q ss_pred             HHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccCCCccccccce
Q 045449          679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDV  758 (823)
Q Consensus       679 ~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv  758 (823)
                      +.|++.+|.|+|+.+++||||||+||+++.++.+|++|||.+........ .......++..|+|||++.+..++.++||
T Consensus       113 ~~~i~~al~~lH~~~iiH~dikp~nili~~~~~~~l~dfg~~~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~Di  191 (266)
T cd05064         113 LPGLASGMKYLSEMGYVHKGLAAHKVLVNSDLVCKISGFRRLQEDKSEAI-YTTMSGKSPVLWAAPEAIQYHHFSSASDV  191 (266)
T ss_pred             HHHHHHHHHHHHHCCEeeccccHhhEEEcCCCcEEECCCcccccccccch-hcccCCCCceeecCHHHHhhCCccchhHH
Confidence            56788899999999999999999999999999999999998765422211 11112345678999999998999999999


Q ss_pred             ehhhhhhcccc-CCCCCcCCCc
Q 045449          759 CSFGIISGGKE-TRSMTVGETC  779 (823)
Q Consensus       759 ~S~Gvv~~~~~-~~~~~~~~~~  779 (823)
                      |||||++++++ +|..||.+..
T Consensus       192 ~slG~~l~ell~~g~~p~~~~~  213 (266)
T cd05064         192 WSFGIVMWEVMSYGERPYWDMS  213 (266)
T ss_pred             HHHHHHHHHHhcCCCCCcCcCC
Confidence            99999999965 5999987643

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA10 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchor

>PHA02882 putative serine/threonine kinase; Provisional

Probab=99.83  E-value=2e-21  Score=207.98  Aligned_cols=101  Identities=24%  Similarity=0.280  Sum_probs=86.6

Q ss_pred             HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCcc-----ccccccccCCCcCcccccCCCcc
Q 045449          678 IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQL-----SKQTQTLATIGYMAPEYGTKGRV  752 (823)
Q Consensus       678 ~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~-----~~~~~~~gt~~y~aPE~~~~~~~  752 (823)
                      ++.|++.+|+|+|+.+|+||||||+|||++.++.+||+|||+|+........     .......||+.|+|||+..+..+
T Consensus       131 i~~qi~~~l~~lH~~~iiHrDiKp~Nill~~~~~~~l~DFGla~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~  210 (294)
T PHA02882        131 IMKDMLTTLEYIHEHGISHGDIKPENIMVDGNNRGYIIDYGIASHFIIHGKHIEYSKEQKDLHRGTLYYAGLDAHNGACV  210 (294)
T ss_pred             HHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCcEEEEEcCCceeeccCCcccccccccccccCCCccccCHHHhCCCCC
Confidence            4678899999999999999999999999999999999999999876432211     11123469999999999999999


Q ss_pred             ccccceehhhhhhccccCCCCCcCCC
Q 045449          753 STRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       753 ~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      +.++||||+||+++++.+|..||.+.
T Consensus       211 ~~~~DiwSlG~~l~el~~g~~P~~~~  236 (294)
T PHA02882        211 TRRGDLESLGYCMLKWAGIKLPWKGF  236 (294)
T ss_pred             CcHHHHHHHHHHHHHHHhCCCCCCcc
Confidence            99999999999999999999999765

>cd05080 PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=99.83  E-value=5.6e-21  Score=203.40  Aligned_cols=138  Identities=28%  Similarity=0.359  Sum_probs=113.8

Q ss_pred             CeEEEEEEehHhh-HHHHHHHHHHHHHHhhcchhhHHH-----------------------------------------H
Q 045449          641 GMEVAVKVFHQQY-ERALKSFEDECEVRKRIRHRNLVK-----------------------------------------I  678 (823)
Q Consensus       641 ~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~-----------------------------------------~  678 (823)
                      +..||+|++.... ....+.|.+|++++++++||||++                                         +
T Consensus        33 ~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~l~~~~~~~i  112 (283)
T cd05080          33 GEMVAVKTLKRECGQQNTSGWKKEINILKTLYHENIVKYKGCCSEQGGKGLQLIMEYVPLGSLRDYLPKHKLNLAQLLLF  112 (283)
T ss_pred             CceEEEEEeccccChHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCCceEEEEecCCCCCCHHHHHHHcCCCHHHHHHH
Confidence            4679999987543 334578899999999999999998                                         3


Q ss_pred             HHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccc-cccccccCCCcCcccccCCCccccccc
Q 045449          679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLS-KQTQTLATIGYMAPEYGTKGRVSTRGD  757 (823)
Q Consensus       679 ~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~D  757 (823)
                      +.|++.+|+|+|+.+|+||||||+||+++.++.+||+|||+++......... ......++..|+|||......++.++|
T Consensus       113 ~~~l~~~l~~lH~~~i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~PE~~~~~~~~~~~D  192 (283)
T cd05080         113 AQQICEGMAYLHSQHYIHRDLAARNVLLDNDRLVKIGDFGLAKAVPEGHEYYRVREDGDSPVFWYAVECLKENKFSYASD  192 (283)
T ss_pred             HHHHHHHHHHHHHCCeeccccChheEEEcCCCcEEEeecccccccCCcchhhccCCCCCCCceeeCHhHhcccCCCcccc
Confidence            5688889999999999999999999999999999999999998765332211 112234567799999998888999999


Q ss_pred             eehhhhhhccccCCCCCcCCC
Q 045449          758 VCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       758 v~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      ||||||+++++.+|..|+...
T Consensus       193 i~slG~~l~el~tg~~p~~~~  213 (283)
T cd05080         193 VWSFGVTLYELLTHCDSKQSP  213 (283)
T ss_pred             cHHHHHHHHHHHhCCCCCCCC
Confidence            999999999999999887654

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of sign

>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]

Probab=99.83  E-value=6.6e-22  Score=214.94  Aligned_cols=132  Identities=23%  Similarity=0.281  Sum_probs=108.2

Q ss_pred             CeEEEEEEehHhhHHHHHHHHHHHHHHhhc-chhhHHH---------------------------------------HHH
Q 045449          641 GMEVAVKVFHQQYERALKSFEDECEVRKRI-RHRNLVK---------------------------------------IIS  680 (823)
Q Consensus       641 ~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~---------------------------------------~~~  680 (823)
                      ++..|||++.+.    ..+-.+|+.++.+. .||||++                                       +++
T Consensus       347 ~~~~~vkii~~~----~~~~~~e~~~~~~~~~h~niv~~~~v~~~~~~~~~v~e~l~g~ell~ri~~~~~~~~e~~~w~~  422 (612)
T KOG0603|consen  347 DQEPAVKIISKR----ADDNQDEIPISLLVRDHPNIVKSHDVYEDGKEIYLVMELLDGGELLRRIRSKPEFCSEASQWAA  422 (612)
T ss_pred             ccchhheecccc----ccccccccchhhhhcCCCcceeecceecCCceeeeeehhccccHHHHHHHhcchhHHHHHHHHH
Confidence            455777777554    12344566555555 6888887                                       467


Q ss_pred             HHHHHhhhcCCCCEEeccCCCCCEEe-CCCCcEEEeecccccccCCCCccccccccccCCCcCcccccCCCcccccccee
Q 045449          681 SSLEYLHFGHSIPIIHCDLKPSNVLL-DEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVC  759 (823)
Q Consensus       681 ~~l~~L~~~h~~~ivHrdlk~~NiLl-~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~  759 (823)
                      +++.+++|+|++||||||+||+|||+ +..++++|+|||.++.....     ..+.+-|..|.|||+.....|++.||+|
T Consensus       423 ~lv~Av~~LH~~gvvhRDLkp~NIL~~~~~g~lrltyFG~a~~~~~~-----~~tp~~t~~y~APEvl~~~~yt~acD~W  497 (612)
T KOG0603|consen  423 ELVSAVDYLHEQGVVHRDLKPGNILLDGSAGHLRLTYFGFWSELERS-----CDTPALTLQYVAPEVLAIQEYTEACDWW  497 (612)
T ss_pred             HHHHHHHHHHhcCeeecCCChhheeecCCCCcEEEEEechhhhCchh-----hcccchhhcccChhhhccCCCCcchhhH
Confidence            89999999999999999999999999 58899999999999987544     2345678999999999999999999999


Q ss_pred             hhhhhhccccCCCCCcCCCccc
Q 045449          760 SFGIISGGKETRSMTVGETCTP  781 (823)
Q Consensus       760 S~Gvv~~~~~~~~~~~~~~~~~  781 (823)
                      |+||++|+|++|..||..-...
T Consensus       498 SLGvlLy~ML~G~tp~~~~P~~  519 (612)
T KOG0603|consen  498 SLGVLLYEMLTGRTLFAAHPAG  519 (612)
T ss_pred             HHHHHHHHHHhCCCccccCCch
Confidence            9999999999999999766544

>cd05033 PTKc_EphR Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

Probab=99.83  E-value=5.5e-21  Score=201.45  Aligned_cols=151  Identities=21%  Similarity=0.363  Sum_probs=120.4

Q ss_pred             ccCCccceeeccC---------------CeEEEEEEehHhh-HHHHHHHHHHHHHHhhcchhhHHH--------------
Q 045449          628 DRFSENNLIGIGN---------------GMEVAVKVFHQQY-ERALKSFEDECEVRKRIRHRNLVK--------------  677 (823)
Q Consensus       628 ~~f~~~~~lg~g~---------------~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~--------------  677 (823)
                      ++|...+.+|.|+               ...||||+++... ....++|.+|+.++++++||||++              
T Consensus         4 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~iv   83 (266)
T cd05033           4 SYVTIEKVIGGGEFGEVCRGRLKLPGKKEIDVAIKTLKAGSSDKQRLDFLTEASIMGQFDHPNIIRLEGVVTKSRPVMII   83 (266)
T ss_pred             HHceeeeEecCCccceEEEEEEccCCCCcceEEEEEcCCCCChHHHHHHHHHHHHHHhCCCCCcceEeEEEecCCceEEE
Confidence            3455666666664               2458999886543 445578999999999999999998              


Q ss_pred             ---------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccc
Q 045449          678 ---------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLS  730 (823)
Q Consensus       678 ---------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~  730 (823)
                                                 ++.|++.+|+|+|+.+|+||||||+||+++.++.+|++|||+++.........
T Consensus        84 ~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lh~~~i~H~di~p~nili~~~~~~~l~dfg~~~~~~~~~~~~  163 (266)
T cd05033          84 TEYMENGSLDKFLRENDGKFTVGQLVGMLRGIASGMKYLSEMNYVHRDLAARNILVNSNLVCKVSDFGLSRRLEDSEATY  163 (266)
T ss_pred             EEcCCCCCHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCcceEEEcCCCCEEECccchhhcccccccce
Confidence                                       24678889999999999999999999999999999999999999875222211


Q ss_pred             cccccccCCCcCcccccCCCccccccceehhhhhhccccC-CCCCcCCC
Q 045449          731 KQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKET-RSMTVGET  778 (823)
Q Consensus       731 ~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~-~~~~~~~~  778 (823)
                      ......++..|+|||...+..++.++|||||||+++++++ |..||.+.
T Consensus       164 ~~~~~~~~~~y~~Pe~~~~~~~~~~~Dv~slG~~l~~l~~~g~~p~~~~  212 (266)
T cd05033         164 TTKGGKIPIRWTAPEAIAYRKFTSASDVWSFGIVMWEVMSYGERPYWDM  212 (266)
T ss_pred             eccCCCCCccccChhhhccCCCccccchHHHHHHHHHHHccCCCCCCCC
Confidence            1222345678999999988889999999999999999886 88888654

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment

>cd05103 PTKc_VEGFR2 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2

Probab=99.83  E-value=5e-21  Score=209.59  Aligned_cols=98  Identities=26%  Similarity=0.321  Sum_probs=81.3

Q ss_pred             HHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccCCCccccccceeh
Q 045449          681 SSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCS  760 (823)
Q Consensus       681 ~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S  760 (823)
                      |++++|+|+|+.+|+||||||+||+++.++.+||+|||+++...............++..|+|||++.+..++.++||||
T Consensus       187 qi~~al~~lH~~~i~H~dikp~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~s  266 (343)
T cd05103         187 QVAKGMEFLASRKCIHRDLAARNILLSENNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWS  266 (343)
T ss_pred             HHHHHHHHHHhCCeecCCCccCeEEEcCCCcEEEEecccccccccCcchhhcCCCCCCcceECcHHhcCCCCCchhhHHH
Confidence            67788999999999999999999999999999999999998754332222222334567899999998888999999999


Q ss_pred             hhhhhccccC-CCCCcCCC
Q 045449          761 FGIISGGKET-RSMTVGET  778 (823)
Q Consensus       761 ~Gvv~~~~~~-~~~~~~~~  778 (823)
                      |||+++++++ |..|+...
T Consensus       267 lG~~l~el~~~g~~p~~~~  285 (343)
T cd05103         267 FGVLLWEIFSLGASPYPGV  285 (343)
T ss_pred             HHHHHHHHHHCCCCCCCCc
Confidence            9999999985 88887653

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The carboxyl terminus of VEGFR2 plays an important role in its autophosp

>KOG0584 consensus Serine/threonine protein kinase [General function prediction only]

Probab=99.83  E-value=2.5e-21  Score=209.51  Aligned_cols=139  Identities=27%  Similarity=0.419  Sum_probs=114.6

Q ss_pred             ceeeccCCeEEEEEEehHh-----------------hHHHHHHHHHHHHHHhhcchhhHHHH------------------
Q 045449          634 NLIGIGNGMEVAVKVFHQQ-----------------YERALKSFEDECEVRKRIRHRNLVKI------------------  678 (823)
Q Consensus       634 ~~lg~g~~~~vavK~~~~~-----------------~~~~~~~~~~E~~~l~~l~h~niv~~------------------  678 (823)
                      .++|+|. ..++-|.++..                 .....++|..|+++++.|+|||||++                  
T Consensus        46 evLGrGa-fKtVYka~De~~giEVAWnqvk~~d~~q~~~~leR~~~Ev~lLKsL~H~NIirfy~SW~d~~n~~in~iTEL  124 (632)
T KOG0584|consen   46 EVLGRGA-FKTVYKAFDEEEGIEVAWNQVKIRDVTQSPEELERLYSEVHLLKSLKHPNIIRFYDSWVDTDNKTINFITEL  124 (632)
T ss_pred             hhccccc-ceeeeeccccccchhhHHHHHhHHHhhcChHHHHHHHHHHHHHccCCCCceeeeeeheecCCCceeeeeeec
Confidence            5778887 45555555321                 12345789999999999999999992                  


Q ss_pred             ------------------------HHHHHHHhhhcCC--CCEEeccCCCCCEEeCCC-CcEEEeecccccccCCCCcccc
Q 045449          679 ------------------------ISSSLEYLHFGHS--IPIIHCDLKPSNVLLDED-MVAHISDFGIAKLLSGEDQLSK  731 (823)
Q Consensus       679 ------------------------~~~~l~~L~~~h~--~~ivHrdlk~~NiLl~~~-~~~kl~DfGla~~~~~~~~~~~  731 (823)
                                              ..|++.+|+|+|+  ++|+|||||.+||++++. |.+||.|.|+|+.....    .
T Consensus       125 ~TSGtLr~Y~kk~~~vn~kaik~W~RQILkGL~yLHs~~PPIIHRDLKCDNIFinG~~G~VKIGDLGLAtl~r~s----~  200 (632)
T KOG0584|consen  125 FTSGTLREYRKKHRRVNIKAIKSWCRQILKGLVYLHSQDPPIIHRDLKCDNIFVNGNLGEVKIGDLGLATLLRKS----H  200 (632)
T ss_pred             ccCCcHHHHHHHhccCCHHHHHHHHHHHHHHhhhhhcCCCCccccccccceEEEcCCcCceeecchhHHHHhhcc----c
Confidence                                    4688888888876  689999999999999855 89999999999987543    2


Q ss_pred             ccccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCC
Q 045449          732 QTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       732 ~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      ....+|||.|||||+.. ..|++.+||||||+.+.||.|+.+|+.+.
T Consensus       201 aksvIGTPEFMAPEmYE-E~YnE~VDVYaFGMCmLEMvT~eYPYsEC  246 (632)
T KOG0584|consen  201 AKSVIGTPEFMAPEMYE-ENYNELVDVYAFGMCMLEMVTSEYPYSEC  246 (632)
T ss_pred             cceeccCccccChHHHh-hhcchhhhhhhhhHHHHHHHhccCChhhh
Confidence            34579999999999876 78999999999999999999999999875

>cd07877 STKc_p38alpha_MAPK14 Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase

Probab=99.83  E-value=8e-21  Score=208.17  Aligned_cols=157  Identities=31%  Similarity=0.379  Sum_probs=131.0

Q ss_pred             cccCHHHHHHHhccCCccceeeccC------------CeEEEEEEehHhh--HHHHHHHHHHHHHHhhcchhhHHH----
Q 045449          616 RRFSYHELLRATDRFSENNLIGIGN------------GMEVAVKVFHQQY--ERALKSFEDECEVRKRIRHRNLVK----  677 (823)
Q Consensus       616 ~~~~~~~l~~at~~f~~~~~lg~g~------------~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~----  677 (823)
                      +.....++..++++|...+.||.|+            +..||||++....  ....+.+.+|++++++++||||++    
T Consensus         5 ~~~~~~~~~~~~~~y~~~~~lg~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l~~l~h~~iv~~~~~   84 (345)
T cd07877           5 RQELNKTIWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDV   84 (345)
T ss_pred             hhhHHHHHhhccCceEEEEEeeecCCeEEEEEEEcCCCeEEEEEEecCcchhhHHHHHHHHHHHHHHHcCCCcccceeee
Confidence            4456678888999999999999885            5679999986432  233467889999999999999987    


Q ss_pred             ----------------------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeec
Q 045449          678 ----------------------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDF  717 (823)
Q Consensus       678 ----------------------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~Df  717 (823)
                                                              ++.|++.+|+|+|+.+|+||||||+||++++++.+||+||
T Consensus        85 ~~~~~~~~~~~~~~lv~~~~~~~L~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~dlkp~NIll~~~~~~kl~df  164 (345)
T cd07877          85 FTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDF  164 (345)
T ss_pred             eeecccccccccEEEEehhcccCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeeecCCChHHEEEcCCCCEEEecc
Confidence                                                    3468889999999999999999999999999999999999


Q ss_pred             ccccccCCCCccccccccccCCCcCcccccCC-CccccccceehhhhhhccccCCCCCcCC
Q 045449          718 GIAKLLSGEDQLSKQTQTLATIGYMAPEYGTK-GRVSTRGDVCSFGIISGGKETRSMTVGE  777 (823)
Q Consensus       718 Gla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~  777 (823)
                      |+++.....     .....|+..|+|||+..+ ..++.++||||+||+++++.+|..||..
T Consensus       165 g~~~~~~~~-----~~~~~~~~~y~aPE~~~~~~~~~~~~DvwslG~il~el~~g~~pf~~  220 (345)
T cd07877         165 GLARHTDDE-----MTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPG  220 (345)
T ss_pred             ccccccccc-----ccccccCCCccCHHHHhCccCCCchhhHHHHHHHHHHHHhCCCCCCC
Confidence            998864321     233568899999998765 4688999999999999999999998854

Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14

>cd05072 PTKc_Lyn Catalytic domain of the Protein Tyrosine Kinase, Lyn

Probab=99.83  E-value=4e-21  Score=201.88  Aligned_cols=149  Identities=26%  Similarity=0.406  Sum_probs=119.7

Q ss_pred             ccCCccceeeccC-----------CeEEEEEEehHhhHHHHHHHHHHHHHHhhcchhhHHH-------------------
Q 045449          628 DRFSENNLIGIGN-----------GMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVK-------------------  677 (823)
Q Consensus       628 ~~f~~~~~lg~g~-----------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~-------------------  677 (823)
                      ++|+..+.+|+|+           +..||+|.+..... ..+.+.+|+.++++++|+||++                   
T Consensus         6 ~~~~~~~~lg~g~~g~v~~~~~~~~~~v~iK~~~~~~~-~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~   84 (261)
T cd05072           6 ESIKLVKKLGAGQFGEVWMGYYNNSTKVAVKTLKPGTM-SVQAFLEEANLMKTLQHDKLVRLYAVVTKEEPIYIITEYMA   84 (261)
T ss_pred             HHeEEeeecCCcCCceEEEEEecCCceEEEEEccCCch-hHHHHHHHHHHHHhCCCCCeeeEEEEEcCCCCcEEEEecCC
Confidence            3455556666664           35689998765432 3478999999999999999998                   


Q ss_pred             -----------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccc
Q 045449          678 -----------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQ  734 (823)
Q Consensus       678 -----------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~  734 (823)
                                             ++.|++++|+|+|+.+++||||||+||+++.++.+||+|||+++....... .....
T Consensus        85 ~~~L~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~LH~~~i~H~dl~p~nili~~~~~~~l~dfg~~~~~~~~~~-~~~~~  163 (261)
T cd05072          85 KGSLLDFLKSDEGGKVLLPKLIDFSAQIAEGMAYIERKNYIHRDLRAANVLVSESLMCKIADFGLARVIEDNEY-TAREG  163 (261)
T ss_pred             CCcHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCeeccccchhhEEecCCCcEEECCCccceecCCCce-eccCC
Confidence                                   246788899999999999999999999999999999999999987643221 11223


Q ss_pred             cccCCCcCcccccCCCccccccceehhhhhhccccC-CCCCcCCC
Q 045449          735 TLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKET-RSMTVGET  778 (823)
Q Consensus       735 ~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~-~~~~~~~~  778 (823)
                      ..++..|+|||+...+.++.++|||||||++|++++ |..||.+.
T Consensus       164 ~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~t~g~~p~~~~  208 (261)
T cd05072         164 AKFPIKWTAPEAINFGSFTIKSDVWSFGILLYEIVTYGKIPYPGM  208 (261)
T ss_pred             CccceecCCHHHhccCCCChhhhhhhhHHHHHHHHccCCCCCCCC
Confidence            346778999999988889999999999999999998 88888653

Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth fa

>cd05105 PTKc_PDGFR_alpha Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha

Probab=99.82  E-value=3.9e-21  Score=213.53  Aligned_cols=98  Identities=26%  Similarity=0.313  Sum_probs=82.2

Q ss_pred             HHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccCCCccccccceeh
Q 045449          681 SSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCS  760 (823)
Q Consensus       681 ~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S  760 (823)
                      |++++|.|+|+.+|+||||||+||+++.++.+||+|||+++...............++..|+|||++.+..++.++||||
T Consensus       245 qi~~aL~~LH~~~ivH~dikp~Nill~~~~~~kL~DfGla~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwS  324 (400)
T cd05105         245 QVARGMEFLASKNCVHRDLAARNVLLAQGKIVKICDFGLARDIMHDSNYVSKGSTFLPVKWMAPESIFDNLYTTLSDVWS  324 (400)
T ss_pred             HHHHHHHHHHhCCeeCCCCChHhEEEeCCCEEEEEeCCcceeccccccccccCCcCCCcceEChhhhcCCCCCchhhHHH
Confidence            46788999999999999999999999999999999999998764333222223345778999999998888999999999


Q ss_pred             hhhhhccccC-CCCCcCCC
Q 045449          761 FGIISGGKET-RSMTVGET  778 (823)
Q Consensus       761 ~Gvv~~~~~~-~~~~~~~~  778 (823)
                      |||+++++++ |..||...
T Consensus       325 lGvil~ellt~g~~P~~~~  343 (400)
T cd05105         325 YGILLWEIFSLGGTPYPGM  343 (400)
T ss_pred             HHHHHHHHHHCCCCCCccc
Confidence            9999999985 88887653

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF-

>cd06624 STKc_ASK Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase

Probab=99.82  E-value=6e-21  Score=201.43  Aligned_cols=155  Identities=30%  Similarity=0.403  Sum_probs=125.9

Q ss_pred             HHHHHhccCCccceeeccC------------CeEEEEEEehHhhHHHHHHHHHHHHHHhhcchhhHHH------------
Q 045449          622 ELLRATDRFSENNLIGIGN------------GMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVK------------  677 (823)
Q Consensus       622 ~l~~at~~f~~~~~lg~g~------------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~------------  677 (823)
                      |+..+++.+.....+|+|+            +..||+|.+........+.+.+|++++++++|+||++            
T Consensus         2 ~~~~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~   81 (268)
T cd06624           2 EYEYEYDENGERVVLGKGTYGIVYAARDLSTQVRIAIKEIPERDSRYVQPLHEEIALHSYLKHRNIVQYLGSDSENGFFK   81 (268)
T ss_pred             CcccccccCCceEEEecCCceEEEEeEecCCCcEEEEEEecCCCHHHHHHHHHHHHHHHhcCCCCeeeeeeeeccCCEEE
Confidence            3455677777777888875            4568999887666666678999999999999999998            


Q ss_pred             -------------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCC-CCcEEEeecccccccCC
Q 045449          678 -------------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDE-DMVAHISDFGIAKLLSG  725 (823)
Q Consensus       678 -------------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~-~~~~kl~DfGla~~~~~  725 (823)
                                                     ++.|++.+|.|+|+.+|+||||||+||+++. ++.+||+|||.+.....
T Consensus        82 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~i~h~dl~p~nil~~~~~~~~~l~dfg~~~~~~~  161 (268)
T cd06624          82 IFMEQVPGGSLSALLRSKWGPLKDNEQTIIFYTKQILEGLKYLHDNQIVHRDIKGDNVLVNTYSGVVKISDFGTSKRLAG  161 (268)
T ss_pred             EEEecCCCCCHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHHCCEeecCCCHHHEEEcCCCCeEEEecchhheeccc
Confidence                                           2357888999999999999999999999986 67999999999876543


Q ss_pred             CCccccccccccCCCcCcccccCCCc--cccccceehhhhhhccccCCCCCcCCC
Q 045449          726 EDQLSKQTQTLATIGYMAPEYGTKGR--VSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       726 ~~~~~~~~~~~gt~~y~aPE~~~~~~--~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      ...  ......|++.|+|||+.....  ++.++|||||||+++++.+|..|+.+.
T Consensus       162 ~~~--~~~~~~~~~~~~aPE~~~~~~~~~~~~~Dv~slGvvl~~l~~g~~p~~~~  214 (268)
T cd06624         162 INP--CTETFTGTLQYMAPEVIDKGPRGYGAPADIWSLGCTIVEMATGKPPFIEL  214 (268)
T ss_pred             CCC--ccccCCCCccccChhhhccccccCCchhhhHHHHHHHHHHHhCCCCCccc
Confidence            221  122345889999999986644  789999999999999999999998654

Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kina

>cd06653 STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=99.82  E-value=6.2e-21  Score=200.87  Aligned_cols=150  Identities=25%  Similarity=0.281  Sum_probs=121.8

Q ss_pred             cCCccceeeccC------------CeEEEEEEehHh-----hHHHHHHHHHHHHHHhhcchhhHHH--------------
Q 045449          629 RFSENNLIGIGN------------GMEVAVKVFHQQ-----YERALKSFEDECEVRKRIRHRNLVK--------------  677 (823)
Q Consensus       629 ~f~~~~~lg~g~------------~~~vavK~~~~~-----~~~~~~~~~~E~~~l~~l~h~niv~--------------  677 (823)
                      +|...+.+|.|+            +..||+|++...     .....+.|.+|++++++++|+||++              
T Consensus         3 ~~~~~~~lg~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~~~~~~   82 (264)
T cd06653           3 NWRLGKLLGRGAFGEVYLCYDADTGRELAVKQVPFDPDSQETSKEVNALECEIQLLKNLRHDRIVQYYGCLRDPEEKKLS   82 (264)
T ss_pred             ceeeeeeEccCCCeEEEEEEEcCCCCEEEEEEEecCcccchhhHHHHHHHHHHHHHHHcCCCCcceEEEEEEcCCCCEEE
Confidence            456666777664            567999987422     2344568999999999999999998              


Q ss_pred             ----------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCc-
Q 045449          678 ----------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQ-  728 (823)
Q Consensus       678 ----------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~-  728 (823)
                                                  ++.|++++|.|+|+.+++|||+||+||+++.++.++|+|||+++....... 
T Consensus        83 ~v~e~~~~~~L~~~~~~~~~l~~~~~~~~~~~i~~al~~LH~~~i~H~dl~p~ni~i~~~~~~~l~dfg~~~~~~~~~~~  162 (264)
T cd06653          83 IFVEYMPGGSIKDQLKAYGALTENVTRRYTRQILQGVSYLHSNMIVHRDIKGANILRDSAGNVKLGDFGASKRIQTICMS  162 (264)
T ss_pred             EEEEeCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHEEEcCCCCEEECcccccccccccccc
Confidence                                        346888999999999999999999999999999999999999986532111 


Q ss_pred             cccccccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCC
Q 045449          729 LSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       729 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      ........|+..|+|||+..+..++.++|||||||+++++.+|..||.+.
T Consensus       163 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~  212 (264)
T cd06653         163 GTGIKSVTGTPYWMSPEVISGEGYGRKADVWSVACTVVEMLTEKPPWAEY  212 (264)
T ss_pred             CccccccCCcccccCHhhhcCCCCCccccHHHHHHHHHHHHhCCCCCCcc
Confidence            01112346899999999998888999999999999999999999999765

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phospho

>cd05032 PTKc_InsR_like Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases

Probab=99.82  E-value=4.9e-21  Score=203.05  Aligned_cols=137  Identities=25%  Similarity=0.373  Sum_probs=113.3

Q ss_pred             eEEEEEEehHhh-HHHHHHHHHHHHHHhhcchhhHHH-------------------------------------------
Q 045449          642 MEVAVKVFHQQY-ERALKSFEDECEVRKRIRHRNLVK-------------------------------------------  677 (823)
Q Consensus       642 ~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~-------------------------------------------  677 (823)
                      ..||+|.+.... ......|.+|+.++.+++|+||++                                           
T Consensus        37 ~~~aik~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~  116 (277)
T cd05032          37 TRVAIKTVNENASMRERIEFLNEASVMKEFNCHHVVRLLGVVSTGQPTLVVMELMAKGDLKSYLRSRRPEAENNPGLGPP  116 (277)
T ss_pred             eeEEEEecCCccCHHHHHHHHHHHHHHHhCCCCceeEEEEEEcCCCCcEEEEecCCCCCHHHHHHhcccchhhccCCCCC
Confidence            569999986443 344567899999999999999997                                           


Q ss_pred             -------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccCCC
Q 045449          678 -------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKG  750 (823)
Q Consensus       678 -------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~  750 (823)
                             ++.|++.+|.|+|+.+++||||||+||+++.++.+||+|||+++...............++..|+|||.+..+
T Consensus       117 ~~~~~~~~~~~i~~~l~~lH~~~i~H~di~p~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~  196 (277)
T cd05032         117 TLQKFIQMAAEIADGMAYLAAKKFVHRDLAARNCMVAEDLTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMAPESLKDG  196 (277)
T ss_pred             CHHHHHHHHHHHHHHHHHHHhCCccccccChheEEEcCCCCEEECCcccchhhccCcccccCCCCCccccccCHHHHhcC
Confidence                   1357788999999999999999999999999999999999999876544332233344578899999999888


Q ss_pred             ccccccceehhhhhhccccC-CCCCcCCC
Q 045449          751 RVSTRGDVCSFGIISGGKET-RSMTVGET  778 (823)
Q Consensus       751 ~~~~~~Dv~S~Gvv~~~~~~-~~~~~~~~  778 (823)
                      .++.++|||||||+++++.+ |..||.+.
T Consensus       197 ~~~~~~Di~slG~il~el~t~g~~p~~~~  225 (277)
T cd05032         197 VFTTKSDVWSFGVVLWEMATLAEQPYQGL  225 (277)
T ss_pred             CCCcccchHHHHHHHHHhhccCCCCCccC
Confidence            89999999999999999997 88887653

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological

>cd05116 PTKc_Syk Catalytic domain of the Protein Tyrosine Kinase, Spleen tyrosine kinase

Probab=99.82  E-value=5.8e-21  Score=200.22  Aligned_cols=139  Identities=23%  Similarity=0.321  Sum_probs=114.8

Q ss_pred             CCeEEEEEEehHhh--HHHHHHHHHHHHHHhhcchhhHHH---------------------------------------H
Q 045449          640 NGMEVAVKVFHQQY--ERALKSFEDECEVRKRIRHRNLVK---------------------------------------I  678 (823)
Q Consensus       640 ~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~---------------------------------------~  678 (823)
                      .+..||||++....  ....++|.+|+.++++++|+||++                                       +
T Consensus        21 ~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~i  100 (257)
T cd05116          21 SEKTVAVKILKNDNNDPALKDELLREANVMQQLDNPYIVRMIGICEAESWMLVMELAELGPLNKFLQKNKHVTEKNITEL  100 (257)
T ss_pred             CceEEEEEEccCCCCcHHHHHHHHHHHHHHHhCCCCCcceEEEEEcCCCcEEEEecCCCCcHHHHHHhcCCCCHHHHHHH
Confidence            35789999986432  345678999999999999999997                                       3


Q ss_pred             HHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccc-cccccccCCCcCcccccCCCccccccc
Q 045449          679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLS-KQTQTLATIGYMAPEYGTKGRVSTRGD  757 (823)
Q Consensus       679 ~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~D  757 (823)
                      +.|++.+|+++|+++|+||||||+||+++.++.+||+|||+++......... ......++..|+|||.+....++.++|
T Consensus       101 ~~qi~~al~~lH~~~i~H~dlkp~nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~D  180 (257)
T cd05116         101 VHQVSMGMKYLEETNFVHRDLAARNVLLVTQHYAKISDFGLSKALGADENYYKAKTHGKWPVKWYAPECMNYYKFSSKSD  180 (257)
T ss_pred             HHHHHHHHHHHHHCCEeecccchhhEEEcCCCeEEECCCccccccCCCCCeeeecCCCCCCccccCHhHhccCCcCchhH
Confidence            5688899999999999999999999999999999999999998764433211 112234467999999988888999999


Q ss_pred             eehhhhhhccccC-CCCCcCCC
Q 045449          758 VCSFGIISGGKET-RSMTVGET  778 (823)
Q Consensus       758 v~S~Gvv~~~~~~-~~~~~~~~  778 (823)
                      ||||||++|++.+ |..||...
T Consensus       181 i~slG~~l~el~t~g~~p~~~~  202 (257)
T cd05116         181 VWSFGVLMWEAFSYGQKPYKGM  202 (257)
T ss_pred             HHHHHHHHHHHHhCCCCCCCCC
Confidence            9999999999997 88898764

Protein Tyrosine Kinase (PTK) family; Spleen tyrosine kinase (Syk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk, together with Zap-70, form the Syk subfamily of kinases which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Syk was first cloned from the spleen, and its function in hematopoietic cells is well-established. Syk is involved in the signaling downstream of activated receptors (including B-cell and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferatio

>cd08529 STKc_FA2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

Probab=99.82  E-value=7.5e-21  Score=199.03  Aligned_cols=137  Identities=24%  Similarity=0.277  Sum_probs=116.0

Q ss_pred             CeEEEEEEehHh--hHHHHHHHHHHHHHHhhcchhhHHH-----------------------------------------
Q 045449          641 GMEVAVKVFHQQ--YERALKSFEDECEVRKRIRHRNLVK-----------------------------------------  677 (823)
Q Consensus       641 ~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~-----------------------------------------  677 (823)
                      +..||+|.+...  .....+.+.+|++++++++|||+++                                         
T Consensus        25 ~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~  104 (256)
T cd08529          25 KRVYAMKQIDLSKMNRREREEAIDEARVLAKLDSSYIIRYYESFLDKGKLNIVMEYAENGDLHKLLKMQRGRPLPEDQVW  104 (256)
T ss_pred             CcEEEEEEeehhhCCHHHHHHHHHHHHHHHhcCCCCeehheeeeccCCEEEEEEEeCCCCcHHHHHHHhcCCCCCHHHHH
Confidence            577999988643  2445678999999999999999998                                         


Q ss_pred             -HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccCCCcccccc
Q 045449          678 -IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRG  756 (823)
Q Consensus       678 -~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~  756 (823)
                       ++.+++.+|.|+|+.+++|||+||+||+++.++.+||+|||+++.......  ......|++.|+|||+..+..++.++
T Consensus       105 ~i~~~l~~al~~lH~~~i~h~dl~~~nili~~~~~~~l~df~~~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~  182 (256)
T cd08529         105 RFFIQILLGLAHLHSKKILHRDIKSLNLFLDAYDNVKIGDLGVAKLLSDNTN--FANTIVGTPYYLSPELCEDKPYNEKS  182 (256)
T ss_pred             HHHHHHHHHHHHHHHCCcccCCCCcceEEEeCCCCEEEcccccceeccCccc--hhhccccCccccCHHHhcCCCCCCcc
Confidence             245788889999999999999999999999999999999999987654322  12334688999999999988899999


Q ss_pred             ceehhhhhhccccCCCCCcCCCc
Q 045449          757 DVCSFGIISGGKETRSMTVGETC  779 (823)
Q Consensus       757 Dv~S~Gvv~~~~~~~~~~~~~~~  779 (823)
                      |||||||+++++.+|..||....
T Consensus       183 Di~slG~il~~l~~g~~p~~~~~  205 (256)
T cd08529         183 DVWALGVVLYECCTGKHPFDANN  205 (256)
T ss_pred             chHHHHHHHHHHHhCCCCCCCCC
Confidence            99999999999999999986543

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cyc

>KOG1095 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=99.82  E-value=2.6e-21  Score=224.97  Aligned_cols=136  Identities=26%  Similarity=0.400  Sum_probs=112.6

Q ss_pred             EEEEEEehHhh-HHHHHHHHHHHHHHhhcchhhHHH--------------------------------------------
Q 045449          643 EVAVKVFHQQY-ERALKSFEDECEVRKRIRHRNLVK--------------------------------------------  677 (823)
Q Consensus       643 ~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~--------------------------------------------  677 (823)
                      .||||.+.+.. .+.+.+|.+|+.+|++++|||||+                                            
T Consensus       724 ~vaiK~l~~~~~~~~~~~Fl~Ea~~m~~f~HpNiv~liGv~l~~~~~~i~leyM~gGDL~sflr~~r~~~~~~~~L~~~d  803 (1025)
T KOG1095|consen  724 QVAVKSLKRLSSEQEVSDFLKEALLMSKFDHPNIVSLIGVCLDSGPPLILLEYMEGGDLLSFLRESRPAPFQPSNLSMRD  803 (1025)
T ss_pred             EEEEEeccccCCHHHHHHHHHHHHHHhcCCCcceeeEEEeecCCCCcEEEehhcccCcHHHHHHhcccccCCCCCCCHHH
Confidence            38999997654 566789999999999999999999                                            


Q ss_pred             ---HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccCCCcccc
Q 045449          678 ---IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVST  754 (823)
Q Consensus       678 ---~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~  754 (823)
                         +..+++.+++|+++..+|||||-.+|+|++.+..+||+|||+||.+...+.+.......-...|||||.+..+.++.
T Consensus       804 Ll~~a~dvA~G~~YLe~~~fvHRDLAaRNCLL~~~r~VKIaDFGlArDiy~~~yyr~~~~a~lPvkWm~PEsl~d~iFts  883 (1025)
T KOG1095|consen  804 LLAFALDVAKGMNYLESKHFVHRDLAARNCLLDERRVVKIADFGLARDIYDKDYYRKHGEAMLPVKWMPPESLKDGIFTS  883 (1025)
T ss_pred             HHHHHHHHhhhhHHHHhCCCcCcchhhhheeecccCcEEEcccchhHhhhhchheeccCccccceecCCHHHHhhccccc
Confidence               12355566666678889999999999999999999999999999666555554443333457899999999999999


Q ss_pred             ccceehhhhhhccccC-CCCCcCCC
Q 045449          755 RGDVCSFGIISGGKET-RSMTVGET  778 (823)
Q Consensus       755 ~~Dv~S~Gvv~~~~~~-~~~~~~~~  778 (823)
                      |+|||||||++||+++ |..||.+.
T Consensus       884 kSDvWsFGVllWEifslG~~PY~~~  908 (1025)
T KOG1095|consen  884 KSDVWSFGVLLWEIFSLGATPYPSR  908 (1025)
T ss_pred             ccchhhhHHHHHHHHhCCCCCCCCc
Confidence            9999999999999987 66777664

>cd06652 STKc_MEKK2 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 2

Probab=99.82  E-value=5.2e-21  Score=201.51  Aligned_cols=150  Identities=25%  Similarity=0.293  Sum_probs=120.9

Q ss_pred             cCCccceeeccC------------CeEEEEEEehHh-----hHHHHHHHHHHHHHHhhcchhhHHH--------------
Q 045449          629 RFSENNLIGIGN------------GMEVAVKVFHQQ-----YERALKSFEDECEVRKRIRHRNLVK--------------  677 (823)
Q Consensus       629 ~f~~~~~lg~g~------------~~~vavK~~~~~-----~~~~~~~~~~E~~~l~~l~h~niv~--------------  677 (823)
                      +|...+.+|.|+            +..||||.+...     .....+.+.+|++++++++||||++              
T Consensus         3 ~~~~~~~l~~g~~g~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~   82 (265)
T cd06652           3 NWRLGKLLGQGAFGRVYLCYDADTGRELAVKQVQFDPESPETSKEVNALECEIQLLKNLLHERIVQYYGCLRDPMERTLS   82 (265)
T ss_pred             cceEeeEEecCCceEEEEEEEcCCCcEEEEEEeecCcCCcccHHHHHHHHHHHHHHHhcCCCCeeeEEeEeccCCCceEE
Confidence            455566666664            567999987532     1234578899999999999999997              


Q ss_pred             ----------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCcc
Q 045449          678 ----------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQL  729 (823)
Q Consensus       678 ----------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~  729 (823)
                                                  ++.|++.+|+++|+.+++||||||+||+++.++.+||+|||+++........
T Consensus        83 ~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~l~~~l~~lH~~~i~H~dl~p~nil~~~~~~~~l~Dfg~~~~~~~~~~~  162 (265)
T cd06652          83 IFMEHMPGGSIKDQLKSYGALTENVTRKYTRQILEGVSYLHSNMIVHRDIKGANILRDSVGNVKLGDFGASKRLQTICLS  162 (265)
T ss_pred             EEEEecCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHEEecCCCCEEECcCcccccccccccc
Confidence                                        3567888999999999999999999999999999999999999865322111


Q ss_pred             -ccccccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCC
Q 045449          730 -SKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       730 -~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                       .......|+..|+|||+..+..++.++|||||||++|++.+|..||.+.
T Consensus       163 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~  212 (265)
T cd06652         163 GTGMKSVTGTPYWMSPEVISGEGYGRKADIWSVGCTVVEMLTEKPPWAEF  212 (265)
T ss_pred             ccccccCCCCccccChhhhcCCCCCcchhHHHHHHHHHHHhhCCCCCCcc
Confidence             1122346889999999998888999999999999999999999998764

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their re

>cd05040 PTKc_Ack_like Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase

Probab=99.82  E-value=5.8e-21  Score=200.12  Aligned_cols=137  Identities=23%  Similarity=0.304  Sum_probs=115.8

Q ss_pred             eEEEEEEehHhhH-HHHHHHHHHHHHHhhcchhhHHH-----------------------------------------HH
Q 045449          642 MEVAVKVFHQQYE-RALKSFEDECEVRKRIRHRNLVK-----------------------------------------II  679 (823)
Q Consensus       642 ~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~-----------------------------------------~~  679 (823)
                      ..||||++..... ...++|.+|++++++++||||++                                         ++
T Consensus        24 ~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~  103 (257)
T cd05040          24 IPVAVKCLKSDKLSDIMDDFLKEAAIMHSLDHENLIRLYGVVLTHPLMMVTELAPLGSLLDRLRKDALGHFLISTLCDYA  103 (257)
T ss_pred             eEEEEeecCCcccHHHHHHHHHHHHHHhhcCCCCccceeEEEcCCeEEEEEEecCCCcHHHHHHhcccccCcHHHHHHHH
Confidence            4699999986655 56688999999999999999997                                         24


Q ss_pred             HHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCcc-ccccccccCCCcCcccccCCCccccccce
Q 045449          680 SSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQL-SKQTQTLATIGYMAPEYGTKGRVSTRGDV  758 (823)
Q Consensus       680 ~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv  758 (823)
                      .|++++|+++|+.+++||||||+||+++.++.+||+|||+++........ .......++..|+|||++.+..++.++||
T Consensus       104 ~qi~~~L~~lH~~~i~H~di~p~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~y~~pE~~~~~~~~~~~Di  183 (257)
T cd05040         104 VQIANGMRYLESKRFIHRDLAARNILLASDDKVKIGDFGLMRALPQNEDHYVMEEHLKVPFAWCAPESLRTRTFSHASDV  183 (257)
T ss_pred             HHHHHHHHHHHhCCccccccCcccEEEecCCEEEeccccccccccccccceecccCCCCCceecCHHHhcccCcCchhhh
Confidence            58889999999999999999999999999999999999999876543221 11223457889999999988889999999


Q ss_pred             ehhhhhhccccC-CCCCcCCC
Q 045449          759 CSFGIISGGKET-RSMTVGET  778 (823)
Q Consensus       759 ~S~Gvv~~~~~~-~~~~~~~~  778 (823)
                      |||||+++++.+ |..||...
T Consensus       184 ~slG~~l~el~t~g~~p~~~~  204 (257)
T cd05040         184 WMFGVTLWEMFTYGEEPWAGL  204 (257)
T ss_pred             HHHHHHHHHHHhCCCCCCCCC
Confidence            999999999997 99988653

Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with and

>cd05148 PTKc_Srm_Brk Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

Probab=99.82  E-value=4e-21  Score=201.82  Aligned_cols=136  Identities=28%  Similarity=0.439  Sum_probs=114.9

Q ss_pred             CeEEEEEEehHhhHHHHHHHHHHHHHHhhcchhhHHH------------------------------------------H
Q 045449          641 GMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVK------------------------------------------I  678 (823)
Q Consensus       641 ~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~------------------------------------------~  678 (823)
                      +..||+|++..........+.+|++++++++|+||++                                          +
T Consensus        30 ~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~  109 (261)
T cd05148          30 RVRVAIKILKSDDLLKQQDFQKEVQALKRLRHKHLISLFAVCSVGEPVYIITELMEKGSLLAFLRSPEGQVLPVASLIDM  109 (261)
T ss_pred             CCcEEEEeccccchhhHHHHHHHHHHHhcCCCcchhheeeeEecCCCeEEEEeecccCCHHHHHhcCCCCCCCHHHHHHH
Confidence            4668999998766656678999999999999999998                                          2


Q ss_pred             HHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccCCCccccccce
Q 045449          679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDV  758 (823)
Q Consensus       679 ~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv  758 (823)
                      +.|++.+|+|+|+.+++||||||+||++++++.+||+|||.+........  ......++..|+|||+.....++.++||
T Consensus       110 ~~~i~~al~~lH~~~i~h~dl~~~nilv~~~~~~kl~d~g~~~~~~~~~~--~~~~~~~~~~~~~PE~~~~~~~~~~~Di  187 (261)
T cd05148         110 ACQVAEGMAYLEEQNSIHRDLAARNILVGEDLVCKVADFGLARLIKEDVY--LSSDKKIPYKWTAPEAASHGTFSTKSDV  187 (261)
T ss_pred             HHHHHHHHHHHHHCCeeccccCcceEEEcCCceEEEccccchhhcCCccc--cccCCCCceEecCHHHHccCCCCchhhH
Confidence            46788899999999999999999999999999999999999987643221  1223446778999999988889999999


Q ss_pred             ehhhhhhccccC-CCCCcCCC
Q 045449          759 CSFGIISGGKET-RSMTVGET  778 (823)
Q Consensus       759 ~S~Gvv~~~~~~-~~~~~~~~  778 (823)
                      |||||+++++.+ |..||...
T Consensus       188 wslG~~l~~l~~~g~~p~~~~  208 (261)
T cd05148         188 WSFGILLYEMFTYGQVPYPGM  208 (261)
T ss_pred             HHHHHHHHHHHcCCCCCCCcC
Confidence            999999999998 78888654

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase dom

>cd05110 PTKc_HER4 Catalytic domain of the Protein Tyrosine Kinase, HER4

Probab=99.82  E-value=6.4e-21  Score=205.11  Aligned_cols=136  Identities=24%  Similarity=0.329  Sum_probs=111.3

Q ss_pred             EEEEEEehHhh-HHHHHHHHHHHHHHhhcchhhHHH----------------------------------------HHHH
Q 045449          643 EVAVKVFHQQY-ERALKSFEDECEVRKRIRHRNLVK----------------------------------------IISS  681 (823)
Q Consensus       643 ~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~----------------------------------------~~~~  681 (823)
                      .||+|++.... .....++.+|+.++++++||||++                                        ++.|
T Consensus        38 ~vaiK~~~~~~~~~~~~~~~~e~~~~~~l~h~niv~~~~~~~~~~~~~v~e~~~~g~l~~~~~~~~~~~~~~~~~~~~~q  117 (303)
T cd05110          38 PVAIKILNETTGPKANVEFMDEALIMASMDHPHLVRLLGVCLSPTIQLVTQLMPHGCLLDYVHEHKDNIGSQLLLNWCVQ  117 (303)
T ss_pred             eEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCcccEEEEEcCCCceeeehhcCCCCHHHHHHhcccCCCHHHHHHHHHH
Confidence            47889886543 344457899999999999999998                                        2458


Q ss_pred             HHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccCCCccccccceehh
Q 045449          682 SLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSF  761 (823)
Q Consensus       682 ~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~  761 (823)
                      ++.+|.|+|+.+|+||||||+||+++.++.+||+|||+++...............++..|+|||++.+..++.++|||||
T Consensus       118 i~~~L~~LH~~~ivH~dikp~Nill~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Diwsl  197 (303)
T cd05110         118 IAKGMMYLEERRLVHRDLAARNVLVKSPNHVKITDFGLARLLEGDEKEYNADGGKMPIKWMALECIHYRKFTHQSDVWSY  197 (303)
T ss_pred             HHHHHHHHhhcCeeccccccceeeecCCCceEEccccccccccCcccccccCCCccccccCCHHHhccCCCChHHHHHHH
Confidence            88899999999999999999999999999999999999987653332212223446788999999988889999999999


Q ss_pred             hhhhccccC-CCCCcCCC
Q 045449          762 GIISGGKET-RSMTVGET  778 (823)
Q Consensus       762 Gvv~~~~~~-~~~~~~~~  778 (823)
                      ||++|++++ |..||.+.
T Consensus       198 G~~l~el~t~g~~p~~~~  215 (303)
T cd05110         198 GVTIWELMTFGGKPYDGI  215 (303)
T ss_pred             HHHHHHHHhCCCCCCCCC
Confidence            999999886 88888654

Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as bindin

>PHA03209 serine/threonine kinase US3; Provisional

Probab=99.82  E-value=5.2e-21  Score=210.52  Aligned_cols=141  Identities=21%  Similarity=0.250  Sum_probs=115.1

Q ss_pred             HhccCCccceeeccC------------CeEEEEEEehHhhHHHHHHHHHHHHHHhhcchhhHHH----------------
Q 045449          626 ATDRFSENNLIGIGN------------GMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVK----------------  677 (823)
Q Consensus       626 at~~f~~~~~lg~g~------------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~----------------  677 (823)
                      ...+|...+.||.|+            +..||+|+....      ....|+.++++++|+||++                
T Consensus        64 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~valK~~~~~------~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e  137 (357)
T PHA03209         64 ASLGYTVIKTLTPGSEGRVFVATKPGQPDPVVLKIGQKG------TTLIEAMLLQNVNHPSVIRMKDTLVSGAITCMVLP  137 (357)
T ss_pred             hhcCcEEEEEecCCCCeEEEEEEECCCCceEEEEeCCcc------ccHHHHHHHHhCCCCCCcChhheEEeCCeeEEEEE
Confidence            345688888888875            346888875332      3456999999999999998                


Q ss_pred             ------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCcccccc
Q 045449          678 ------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQT  733 (823)
Q Consensus       678 ------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~  733 (823)
                                              ++.|++.+|.|+|+.+|+||||||+|||++.++.+||+|||+++......   ...
T Consensus       138 ~~~~~l~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~~---~~~  214 (357)
T PHA03209        138 HYSSDLYTYLTKRSRPLPIDQALIIEKQILEGLRYLHAQRIIHRDVKTENIFINDVDQVCIGDLGAAQFPVVAP---AFL  214 (357)
T ss_pred             ccCCcHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEECCCCCEEEecCccccccccCc---ccc
Confidence                                    35688999999999999999999999999999999999999997543221   123


Q ss_pred             ccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCc
Q 045449          734 QTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTV  775 (823)
Q Consensus       734 ~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~  775 (823)
                      ...||+.|+|||++.+..++.++|||||||++|+++++..++
T Consensus       215 ~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvvl~ell~~~~~~  256 (357)
T PHA03209        215 GLAGTVETNAPEVLARDKYNSKADIWSAGIVLFEMLAYPSTI  256 (357)
T ss_pred             cccccccccCCeecCCCCCCchhhHHHHHHHHHHHHHcCCcc
Confidence            456999999999999999999999999999999998755443

>cd05084 PTKc_Fes Catalytic domain of the Protein Tyrosine Kinase, Fes

Probab=99.82  E-value=6.3e-21  Score=199.24  Aligned_cols=139  Identities=27%  Similarity=0.336  Sum_probs=111.7

Q ss_pred             CCeEEEEEEehHhh-HHHHHHHHHHHHHHhhcchhhHHH-----------------------------------------
Q 045449          640 NGMEVAVKVFHQQY-ERALKSFEDECEVRKRIRHRNLVK-----------------------------------------  677 (823)
Q Consensus       640 ~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~-----------------------------------------  677 (823)
                      .++.||+|.+.... ......|.+|++++++++||||++                                         
T Consensus        19 ~~~~~a~k~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~   98 (252)
T cd05084          19 DNTPVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQPIYIVMELVQGGDFLTFLRTEGPRLKVKELIQ   98 (252)
T ss_pred             CCceEEEEecCccCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEcCCCCeEEEEeeccCCcHHHHHHhCCCCCCHHHHHH
Confidence            35789999876433 344578999999999999999998                                         


Q ss_pred             HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccCCCccccccc
Q 045449          678 IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGD  757 (823)
Q Consensus       678 ~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~D  757 (823)
                      ++.|++++|.|+|+.+++||||||+||+++.++.+||+|||+++...............++..|+|||.+.++.++.++|
T Consensus        99 ~~~qi~~~L~~lH~~~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~D  178 (252)
T cd05084          99 MVENAAAGMEYLESKHCIHRDLAARNCLVTEKNVLKISDFGMSREEEDGVYASTGGMKQIPVKWTAPEALNYGRYSSESD  178 (252)
T ss_pred             HHHHHHHHHHHHHhCCccccccchheEEEcCCCcEEECccccCcccccccccccCCCCCCceeecCchhhcCCCCChHHH
Confidence            35688889999999999999999999999999999999999998654221111111112345799999998889999999


Q ss_pred             eehhhhhhccccC-CCCCcCCC
Q 045449          758 VCSFGIISGGKET-RSMTVGET  778 (823)
Q Consensus       758 v~S~Gvv~~~~~~-~~~~~~~~  778 (823)
                      |||+||++|++.+ |..|+...
T Consensus       179 v~slG~il~e~~~~~~~p~~~~  200 (252)
T cd05084         179 VWSFGILLWEAFSLGAVPYANL  200 (252)
T ss_pred             HHHHHHHHHHHHhCCCCCcccc
Confidence            9999999999997 77777543

Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular

>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.82  E-value=2e-21  Score=207.62  Aligned_cols=134  Identities=28%  Similarity=0.316  Sum_probs=114.1

Q ss_pred             EEEEEEehHhhHHHHHHHHHHHHHHhhcchhhHHHH-----------------------------------------HHH
Q 045449          643 EVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVKI-----------------------------------------ISS  681 (823)
Q Consensus       643 ~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~-----------------------------------------~~~  681 (823)
                      ..|.|++.-..+...++|.-||+|++.+.||+||++                                         ..|
T Consensus        59 lAAaKvIetkseEELEDylVEIeILa~CdHP~ivkLl~ayy~enkLwiliEFC~GGAVDaimlEL~r~LtE~QIqvvc~q  138 (1187)
T KOG0579|consen   59 LAAAKVIETKSEEELEDYLVEIEILAECDHPVIVKLLSAYYFENKLWILIEFCGGGAVDAIMLELGRVLTEDQIQVVCYQ  138 (1187)
T ss_pred             hhhhhhhcccchhHHhhhhhhhhhhhcCCChHHHHHHHHHhccCceEEEEeecCCchHhHHHHHhccccchHHHHHHHHH
Confidence            357788877777778999999999999999999993                                         357


Q ss_pred             HHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccC-----CCcccccc
Q 045449          682 SLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGT-----KGRVSTRG  756 (823)
Q Consensus       682 ~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~-----~~~~~~~~  756 (823)
                      .+++|.|+|+..|+|||+|..|||++.+|.++|+|||++......  ......++|||+|||||++.     ..+|+.++
T Consensus       139 ~ldALn~LHs~~iIHRDLKAGNiL~TldGdirLADFGVSAKn~~t--~qkRDsFIGTPYWMAPEVvmCET~KD~PYDyka  216 (1187)
T KOG0579|consen  139 VLDALNWLHSQNIIHRDLKAGNILLTLDGDIRLADFGVSAKNKST--RQKRDSFIGTPYWMAPEVVMCETFKDQPYDYKA  216 (1187)
T ss_pred             HHHHHHHHhhcchhhhhccccceEEEecCcEeeecccccccchhH--HhhhccccCCcccccchheeeccccCCCchhhh
Confidence            899999999999999999999999999999999999987653221  22345689999999999864     46799999


Q ss_pred             ceehhhhhhccccCCCCCcCCC
Q 045449          757 DVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       757 Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      ||||||+.+-+|..+..|-.+.
T Consensus       217 DiWSlGITLIEMAqiEPPHhel  238 (1187)
T KOG0579|consen  217 DIWSLGITLIEMAQIEPPHHEL  238 (1187)
T ss_pred             hHHhhhhHHHHHhccCCCcccc
Confidence            9999999999999988876654

>cd06654 STKc_PAK1 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1

Probab=99.82  E-value=4.9e-21  Score=205.26  Aligned_cols=136  Identities=27%  Similarity=0.369  Sum_probs=115.7

Q ss_pred             CeEEEEEEehHhhHHHHHHHHHHHHHHhhcchhhHHH---------------------------------------HHHH
Q 045449          641 GMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVK---------------------------------------IISS  681 (823)
Q Consensus       641 ~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~---------------------------------------~~~~  681 (823)
                      +..||+|.+........+.+.+|+.++++++|+|+++                                       ++.|
T Consensus        45 ~~~v~ik~~~~~~~~~~~~~~~e~~~l~~~~h~~v~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~i~~q  124 (296)
T cd06654          45 GQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEYLAGGSLTDVVTETCMDEGQIAAVCRE  124 (296)
T ss_pred             CcEEEEEEEecCCcchHHHHHHHHHHHHhCCCCCEeeEEEEEEeCCEEEEeecccCCCCHHHHHHhcCCCHHHHHHHHHH
Confidence            5679999887655445578999999999999999998                                       2457


Q ss_pred             HHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccCCCccccccceehh
Q 045449          682 SLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSF  761 (823)
Q Consensus       682 ~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~  761 (823)
                      ++.+|.|+|+.+|+||||||+||+++.++.+||+|||+++.......  ......|++.|+|||...+..++.++|||||
T Consensus       125 l~~aL~~LH~~gi~H~dLkp~Nill~~~~~~kl~dfg~~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~s~  202 (296)
T cd06654         125 CLQALEFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQS--KRSTMVGTPYWMAPEVVTRKAYGPKVDIWSL  202 (296)
T ss_pred             HHHHHHHHHHCCcccCCCCHHHEEEcCCCCEEECccccchhcccccc--ccCcccCCccccCHHHHcCCCCCccchHHHH
Confidence            88899999999999999999999999999999999999886543321  1233468999999999988889999999999


Q ss_pred             hhhhccccCCCCCcCCC
Q 045449          762 GIISGGKETRSMTVGET  778 (823)
Q Consensus       762 Gvv~~~~~~~~~~~~~~  778 (823)
                      ||++|++++|..||...
T Consensus       203 Gvil~~l~~g~~pf~~~  219 (296)
T cd06654         203 GIMAIEMIEGEPPYLNE  219 (296)
T ss_pred             HHHHHHHHhCCCCCCCC
Confidence            99999999999998654

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd08229 STKc_Nek7 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7

Probab=99.82  E-value=1e-20  Score=199.40  Aligned_cols=136  Identities=23%  Similarity=0.321  Sum_probs=114.0

Q ss_pred             CeEEEEEEehHh---hHHHHHHHHHHHHHHhhcchhhHHH----------------------------------------
Q 045449          641 GMEVAVKVFHQQ---YERALKSFEDECEVRKRIRHRNLVK----------------------------------------  677 (823)
Q Consensus       641 ~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~----------------------------------------  677 (823)
                      +..||||.+...   .....++|.+|++++++++|+||++                                        
T Consensus        27 ~~~~~vK~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~  106 (267)
T cd08229          27 GVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKYYASFIEDNELNIVLELADAGDLSRMIKHFKKQKRLIPEK  106 (267)
T ss_pred             CceEEEEeeeehhhhhHHHHHHHHHHHHHHHHccCCchhhhhheeEeCCeEEEEEEecCCCCHHHHHHHhhccCCCCCHH
Confidence            577999987542   2344568999999999999999998                                        


Q ss_pred             ----HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccCCCccc
Q 045449          678 ----IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVS  753 (823)
Q Consensus       678 ----~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~  753 (823)
                          ++.|++++|.|+|+.+++|+||||+||+++.++.++++|||+++.......  ......|+..|+|||+..+..++
T Consensus       107 ~~~~~~~~i~~~l~~LH~~~i~H~dl~p~nili~~~~~~~l~dfg~~~~~~~~~~--~~~~~~~~~~~~ape~~~~~~~~  184 (267)
T cd08229         107 TVWKYFVQLCSALEHMHSRRVMHRDIKPANVFITATGVVKLGDLGLGRFFSSKTT--AAHSLVGTPYYMSPERIHENGYN  184 (267)
T ss_pred             HHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEEcCCCCEEECcchhhhccccCCc--ccccccCCcCccCHHHhcCCCcc
Confidence                245788899999999999999999999999999999999999887643322  12234689999999999888899


Q ss_pred             cccceehhhhhhccccCCCCCcCCC
Q 045449          754 TRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       754 ~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      .++|||||||+++++.+|..||...
T Consensus       185 ~~~Dv~slG~il~~l~~g~~p~~~~  209 (267)
T cd08229         185 FKSDIWSLGCLLYEMAALQSPFYGD  209 (267)
T ss_pred             chhhHHHHHHHHHHHHhCCCCcccc
Confidence            9999999999999999999998653

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase.

>cd08219 STKc_Nek3 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3

Probab=99.82  E-value=1.2e-20  Score=197.63  Aligned_cols=136  Identities=21%  Similarity=0.258  Sum_probs=115.3

Q ss_pred             CeEEEEEEehHh-hHHHHHHHHHHHHHHhhcchhhHHH------------------------------------------
Q 045449          641 GMEVAVKVFHQQ-YERALKSFEDECEVRKRIRHRNLVK------------------------------------------  677 (823)
Q Consensus       641 ~~~vavK~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~------------------------------------------  677 (823)
                      +..||+|.++.. .....+.+.+|+.++++++|+||++                                          
T Consensus        25 ~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~  104 (255)
T cd08219          25 DQKYAMKEIRLPKSSSAVEDSRKEAVLLAKMKHPNIVAFKESFEADGHLYIVMEYCDGGDLMQKIKLQRGKLFPEDTILQ  104 (255)
T ss_pred             CceEEEEEEEcCcchHHHHHHHHHHHHHHhCCCCCcceEEEEEEECCEEEEEEeeCCCCcHHHHHHhccCCCCCHHHHHH
Confidence            567899988532 2445578899999999999999988                                          


Q ss_pred             HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccCCCccccccc
Q 045449          678 IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGD  757 (823)
Q Consensus       678 ~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~D  757 (823)
                      ++.|++.+|.++|+.+|+|+||||+||+++.++.++++|||.++.......  ......|++.|+|||+..+..++.++|
T Consensus       105 ~~~~i~~al~~lH~~~i~H~dl~p~nili~~~~~~~l~dfg~~~~~~~~~~--~~~~~~~~~~~~aPE~~~~~~~~~~~D  182 (255)
T cd08219         105 WFVQMCLGVQHIHEKRVLHRDIKSKNIFLTQNGKVKLGDFGSARLLTSPGA--YACTYVGTPYYVPPEIWENMPYNNKSD  182 (255)
T ss_pred             HHHHHHHHHHHHhhCCcccCCCCcceEEECCCCcEEEcccCcceeeccccc--ccccccCCccccCHHHHccCCcCchhh
Confidence            357888999999999999999999999999999999999999987643322  123356899999999998888999999


Q ss_pred             eehhhhhhccccCCCCCcCCC
Q 045449          758 VCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       758 v~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      |||||++++++.+|..||...
T Consensus       183 v~slG~i~~~l~~g~~p~~~~  203 (255)
T cd08219         183 IWSLGCILYELCTLKHPFQAN  203 (255)
T ss_pred             hhhhchhheehhhccCCCCCC
Confidence            999999999999999998754

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activati

>cd05067 PTKc_Lck_Blk Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk

Probab=99.82  E-value=6.9e-21  Score=199.98  Aligned_cols=148  Identities=26%  Similarity=0.408  Sum_probs=120.0

Q ss_pred             cCCccceeeccC-----------CeEEEEEEehHhhHHHHHHHHHHHHHHhhcchhhHHH--------------------
Q 045449          629 RFSENNLIGIGN-----------GMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVK--------------------  677 (823)
Q Consensus       629 ~f~~~~~lg~g~-----------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~--------------------  677 (823)
                      +|...++||.|+           +..||+|.+..... ..++|.+|+.++++++|+||++                    
T Consensus         7 ~~~~~~~ig~G~~g~v~~~~~~~~~~~a~K~~~~~~~-~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~v~e~~~~~   85 (260)
T cd05067           7 TLKLVKKLGAGQFGEVWMGYYNGHTKVAIKSLKQGSM-SPEAFLAEANLMKQLQHPRLVRLYAVVTQEPIYIITEYMENG   85 (260)
T ss_pred             HceeeeeeccCccceEEeeecCCCceEEEEEecCCCC-cHHHHHHHHHHHHhcCCcCeeeEEEEEccCCcEEEEEcCCCC
Confidence            445556666654           46799999875432 3367999999999999999988                    


Q ss_pred             ---------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccc
Q 045449          678 ---------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTL  736 (823)
Q Consensus       678 ---------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~  736 (823)
                                           ++.|++.+|+|+|+.+++||||||+||+++.++.++++|||+++....... .......
T Consensus        86 ~L~~~~~~~~~~~~~~~~~~~i~~~i~~al~~LH~~~i~H~dl~p~ni~i~~~~~~~l~dfg~~~~~~~~~~-~~~~~~~  164 (260)
T cd05067          86 SLVDFLKTPEGIKLTINKLIDMAAQIAEGMAFIERKNYIHRDLRAANILVSETLCCKIADFGLARLIEDNEY-TAREGAK  164 (260)
T ss_pred             CHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHhcCCeecccccHHhEEEcCCCCEEEccCcceeecCCCCc-ccccCCc
Confidence                                 246888999999999999999999999999999999999999987643221 1122334


Q ss_pred             cCCCcCcccccCCCccccccceehhhhhhccccC-CCCCcCCC
Q 045449          737 ATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKET-RSMTVGET  778 (823)
Q Consensus       737 gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~-~~~~~~~~  778 (823)
                      ++..|+|||++....++.++|||||||+++++++ |..||.+.
T Consensus       165 ~~~~y~~pe~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~  207 (260)
T cd05067         165 FPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTYGRIPYPGM  207 (260)
T ss_pred             ccccccCHHHhccCCcCcccchHHHHHHHHHHHhCCCCCCCCC
Confidence            6778999999988889999999999999999998 89998654

Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Sr

>cd05097 PTKc_DDR_like Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases

Probab=99.82  E-value=7.3e-21  Score=203.86  Aligned_cols=136  Identities=24%  Similarity=0.347  Sum_probs=110.4

Q ss_pred             eEEEEEEehHhh-HHHHHHHHHHHHHHhhcchhhHHH-------------------------------------------
Q 045449          642 MEVAVKVFHQQY-ERALKSFEDECEVRKRIRHRNLVK-------------------------------------------  677 (823)
Q Consensus       642 ~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~-------------------------------------------  677 (823)
                      ..||||.++... ....+.|.+|++++++++|+|+++                                           
T Consensus        45 ~~vavK~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~  124 (295)
T cd05097          45 VLVAVKMLRADVTKTARNDFLKEIKIMSRLKNPNIIRLLGVCVSDDPLCMITEYMENGDLNQFLSQREIESTFTHANNIP  124 (295)
T ss_pred             eEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCcCeEEEEEcCCCccEEEEecCCCCcHHHHHHhccccccccccccCC
Confidence            358999987542 344568999999999999999987                                           


Q ss_pred             ---------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccC
Q 045449          678 ---------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGT  748 (823)
Q Consensus       678 ---------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~  748 (823)
                               ++.+++.+|.|+|+.+++||||||+||+++.++.+||+|||+++...............++..|+|||+..
T Consensus       125 ~~~~~~~~~i~~~i~~al~~lH~~~i~H~dlkp~Nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~  204 (295)
T cd05097         125 SVSIANLLYMAVQIASGMKYLASLNFVHRDLATRNCLVGNHYTIKIADFGMSRNLYSGDYYRIQGRAVLPIRWMAWESIL  204 (295)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHhcCeeccccChhhEEEcCCCcEEecccccccccccCcceeccCcCcCceeecChhhhc
Confidence                     23567888999999999999999999999999999999999998654332222223344577899999998


Q ss_pred             CCccccccceehhhhhhccccC--CCCCcCC
Q 045449          749 KGRVSTRGDVCSFGIISGGKET--RSMTVGE  777 (823)
Q Consensus       749 ~~~~~~~~Dv~S~Gvv~~~~~~--~~~~~~~  777 (823)
                      ++.++.++|||||||+++++.+  +..||..
T Consensus       205 ~~~~~~~~DvwSlG~~l~el~~~~~~~p~~~  235 (295)
T cd05097         205 LGKFTTASDVWAFGVTLWEMFTLCKEQPYSL  235 (295)
T ss_pred             cCCcCchhhHHHHHHHHHHHHHcCCCCCCcc
Confidence            8889999999999999999977  5566654

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including

>cd05089 PTKc_Tie1 Catalytic domain of the Protein Tyrosine Kinase, Tie1

Probab=99.82  E-value=1.2e-20  Score=202.32  Aligned_cols=148  Identities=26%  Similarity=0.358  Sum_probs=114.5

Q ss_pred             ccCCccceeeccC--------------CeEEEEEEehHh-hHHHHHHHHHHHHHHhhc-chhhHHHH-------------
Q 045449          628 DRFSENNLIGIGN--------------GMEVAVKVFHQQ-YERALKSFEDECEVRKRI-RHRNLVKI-------------  678 (823)
Q Consensus       628 ~~f~~~~~lg~g~--------------~~~vavK~~~~~-~~~~~~~~~~E~~~l~~l-~h~niv~~-------------  678 (823)
                      ++|...+.||.|+              ...+|+|.++.. .....+.|.+|++++.++ +||||+++             
T Consensus         2 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~lv   81 (297)
T cd05089           2 EDIKFEDVIGEGNFGQVIRAMIKKDGLKMNAAIKMLKEFASENDHRDFAGELEVLCKLGHHPNIINLLGACENRGYLYIA   81 (297)
T ss_pred             ccceeeeeecCCCcceEEEEEecCCCCcceeEEEEccccCCHHHHHHHHHHHHHHHhhcCCCchhheEEEEccCCcceEE
Confidence            3456666677664              123688877642 234457899999999999 79999872             


Q ss_pred             -------------------------------------------HHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEe
Q 045449          679 -------------------------------------------ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHIS  715 (823)
Q Consensus       679 -------------------------------------------~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~  715 (823)
                                                                 +.|++.+|+|+|+.+|+||||||+||++++++.+||+
T Consensus        82 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~lH~~~ivH~dlkp~Nill~~~~~~kl~  161 (297)
T cd05089          82 IEYAPYGNLLDFLRKSRVLETDPAFAKEHGTASTLTSQQLLQFASDVATGMQYLSEKQFIHRDLAARNVLVGENLASKIA  161 (297)
T ss_pred             EEecCCCcHHHHHHhccccccccccccccCccCCCCHHHHHHHHHHHHHHHHHHHHCCcccCcCCcceEEECCCCeEEEC
Confidence                                                       2456788999999999999999999999999999999


Q ss_pred             ecccccccCCCCccccccccccCCCcCcccccCCCccccccceehhhhhhccccC-CCCCcCCC
Q 045449          716 DFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKET-RSMTVGET  778 (823)
Q Consensus       716 DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~-~~~~~~~~  778 (823)
                      |||++......   ........+..|+|||+..+..++.++|||||||+++++++ |..||...
T Consensus       162 dfg~~~~~~~~---~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlG~il~el~t~g~~pf~~~  222 (297)
T cd05089         162 DFGLSRGEEVY---VKKTMGRLPVRWMAIESLNYSVYTTKSDVWSFGVLLWEIVSLGGTPYCGM  222 (297)
T ss_pred             CcCCCccccce---eccCCCCcCccccCchhhccCCCCchhhHHHHHHHHHHHHcCCCCCCCCC
Confidence            99998743211   11111233567999999988889999999999999999997 88888654

Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations.

>cd08228 STKc_Nek6 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6

Probab=99.82  E-value=8.3e-21  Score=200.14  Aligned_cols=149  Identities=22%  Similarity=0.315  Sum_probs=121.1

Q ss_pred             ccCCccceeeccC------------CeEEEEEEehHh---hHHHHHHHHHHHHHHhhcchhhHHH---------------
Q 045449          628 DRFSENNLIGIGN------------GMEVAVKVFHQQ---YERALKSFEDECEVRKRIRHRNLVK---------------  677 (823)
Q Consensus       628 ~~f~~~~~lg~g~------------~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~---------------  677 (823)
                      ++|...+.+|.|+            +..||||.+...   .......|.+|++++++++||||++               
T Consensus         2 ~~~~i~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~   81 (267)
T cd08228           2 ANFQIEKKIGRGQFSEVYRATCLLDRKPVALKKVQIFEMMDAKARQDCVKEIDLLKQLNHPNVIKYLDSFIEDNELNIVL   81 (267)
T ss_pred             cceeeeeeeccCCCeeEEEEEEeCCCCEEEEEEeeccccCCHHHHHHHHHHHHHHHhCCCcceeeeeeeEEECCeEEEEE
Confidence            3555666666664            577999987532   2344567999999999999999998               


Q ss_pred             -----------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCc
Q 045449          678 -----------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQ  728 (823)
Q Consensus       678 -----------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~  728 (823)
                                                   ++.|++.+|.|+|+.+++||||||+||+++.++.++++|||+++.......
T Consensus        82 e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~i~H~dl~~~nil~~~~~~~~l~d~g~~~~~~~~~~  161 (267)
T cd08228          82 ELADAGDLSQMIKYFKKQKRLIPERTVWKYFVQLCSAVEHMHSRRVMHRDIKPANVFITATGVVKLGDLGLGRFFSSKTT  161 (267)
T ss_pred             EecCCCcHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHHHhhCCeeCCCCCHHHEEEcCCCCEEECccccceeccchhH
Confidence                                         245788889999999999999999999999999999999999987643221


Q ss_pred             cccccccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCC
Q 045449          729 LSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       729 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                        ......|++.|+|||+..+..++.++||||+||+++++.+|..||...
T Consensus       162 --~~~~~~~~~~~~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~p~~~~  209 (267)
T cd08228         162 --AAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGD  209 (267)
T ss_pred             --HHhcCCCCccccChhhhccCCCCchhhHHHHHHHHHHHhcCCCCCccc
Confidence              122346889999999998888999999999999999999999998543

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase

>cd05058 PTKc_Met_Ron Catalytic domain of the Protein Tyrosine Kinases, Met and Ron

Probab=99.82  E-value=8e-21  Score=199.65  Aligned_cols=137  Identities=23%  Similarity=0.327  Sum_probs=110.1

Q ss_pred             CeEEEEEEehHh-hHHHHHHHHHHHHHHhhcchhhHHH------------------------------------------
Q 045449          641 GMEVAVKVFHQQ-YERALKSFEDECEVRKRIRHRNLVK------------------------------------------  677 (823)
Q Consensus       641 ~~~vavK~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~------------------------------------------  677 (823)
                      +..||+|++... .....+.|.+|+.++++++||||++                                          
T Consensus        23 ~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~  102 (262)
T cd05058          23 KIHCAVKSLNRITDLEEVEQFLKEGIIMKDFSHPNVLSLLGICLPSEGSPLVVLPYMKHGDLRNFIRSETHNPTVKDLIG  102 (262)
T ss_pred             eEEEEEEecCccCCHHHHHHHHHHHHHHccCCCCCcceEEEEeecCCCCcEEEEecCCCCCHHHHHHhcCCCCCHHHHHH
Confidence            467999998543 2345578999999999999999998                                          


Q ss_pred             HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCcc--ccccccccCCCcCcccccCCCccccc
Q 045449          678 IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQL--SKQTQTLATIGYMAPEYGTKGRVSTR  755 (823)
Q Consensus       678 ~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~  755 (823)
                      ++.|++.+|+|+|+.+++||||||+||+++.++.+||+|||+++........  .......++..|+|||+..+..++.+
T Consensus       103 ~~~~i~~~l~~lH~~~i~H~dlk~~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~  182 (262)
T cd05058         103 FGLQVAKGMEYLASKKFVHRDLAARNCMLDESFTVKVADFGLARDIYDKEYYSVHNHTGAKLPVKWMALESLQTQKFTTK  182 (262)
T ss_pred             HHHHHHHHHHHHHhCCccccccCcceEEEcCCCcEEECCccccccccCCcceeecccccCcCCccccChhHhccCccchH
Confidence            2458888999999999999999999999999999999999999865432111  11123346778999999988889999


Q ss_pred             cceehhhhhhccccCCCC-CcCC
Q 045449          756 GDVCSFGIISGGKETRSM-TVGE  777 (823)
Q Consensus       756 ~Dv~S~Gvv~~~~~~~~~-~~~~  777 (823)
                      +|||||||+++++.++.. |+..
T Consensus       183 ~Di~slG~~l~el~~~~~~~~~~  205 (262)
T cd05058         183 SDVWSFGVLLWELMTRGAPPYPD  205 (262)
T ss_pred             HHHHHHHHHHHHHHcCCCCCCCC
Confidence            999999999999999644 4543

Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also ca

>cd06636 STKc_MAP4K4_6 Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6

Probab=99.82  E-value=6.8e-21  Score=202.62  Aligned_cols=158  Identities=25%  Similarity=0.336  Sum_probs=128.1

Q ss_pred             cCHHHHHHHhccCCccceeeccC------------CeEEEEEEehHhhHHHHHHHHHHHHHHhhc-chhhHHH-------
Q 045449          618 FSYHELLRATDRFSENNLIGIGN------------GMEVAVKVFHQQYERALKSFEDECEVRKRI-RHRNLVK-------  677 (823)
Q Consensus       618 ~~~~~l~~at~~f~~~~~lg~g~------------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~-------  677 (823)
                      .++.++..+.+.|+..+.+|.|+            +..||+|++.... ....++..|+.++.++ +|+||++       
T Consensus         6 ~~~~~~~~~~~~~~~~~~lg~g~~~~v~~~~~~~~~~~~a~K~~~~~~-~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~   84 (282)
T cd06636           6 IDLSALRDPAGIFELVEVVGNGTYGQVYKGRHVKTGQLAAIKVMDVTE-DEEEEIKLEINMLKKYSHHRNIATYYGAFIK   84 (282)
T ss_pred             hhhhhhcChhhhhhhheeeccCCCeEEEEEEEcCCCcEEEEEEEecCh-HHHHHHHHHHHHHHHhcCCCcEEEEeeehhc
Confidence            46677777788888888888885            4568999886543 2336788999999998 6999886       


Q ss_pred             -----------------------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEee
Q 045449          678 -----------------------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISD  716 (823)
Q Consensus       678 -----------------------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~D  716 (823)
                                                               ++.|++++|.|+|+.+++|||+||+||++++++.++|+|
T Consensus        85 ~~~~~~~~~~~iv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~~~ivH~dl~~~nili~~~~~~~l~d  164 (282)
T cd06636          85 KSPPGHDDQLWLVMEFCGAGSVTDLVKNTKGNALKEDWIAYICREILRGLAHLHAHKVIHRDIKGQNVLLTENAEVKLVD  164 (282)
T ss_pred             ccccCCCCEEEEEEEeCCCCcHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCCEEEee
Confidence                                                     245788999999999999999999999999999999999


Q ss_pred             cccccccCCCCccccccccccCCCcCcccccC-----CCccccccceehhhhhhccccCCCCCcCCC
Q 045449          717 FGIAKLLSGEDQLSKQTQTLATIGYMAPEYGT-----KGRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       717 fGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~-----~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      ||+++.......  ......|++.|+|||++.     ...++.++|||||||+++++.+|..||.+.
T Consensus       165 fg~~~~~~~~~~--~~~~~~~~~~y~aPE~l~~~~~~~~~~~~~~DvwslG~~l~el~~g~~p~~~~  229 (282)
T cd06636         165 FGVSAQLDRTVG--RRNTFIGTPYWMAPEVIACDENPDATYDYRSDIWSLGITAIEMAEGAPPLCDM  229 (282)
T ss_pred             Ccchhhhhcccc--CCCcccccccccCHhhcCcccCcCcCCCcccchhHHHHHHHHHHhCCCCcccc
Confidence            999886532211  223456899999999875     346788999999999999999999998654

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Ea

>cd06643 STKc_SLK Catalytic domain of the Protein Serine/Threonine Kinase, Ste20-like kinase

Probab=99.82  E-value=1e-20  Score=201.22  Aligned_cols=136  Identities=28%  Similarity=0.346  Sum_probs=113.9

Q ss_pred             CeEEEEEEehHhhHHHHHHHHHHHHHHhhcchhhHHH-----------------------------------------HH
Q 045449          641 GMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVK-----------------------------------------II  679 (823)
Q Consensus       641 ~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~-----------------------------------------~~  679 (823)
                      +..||+|.+........+.|.+|++++++++|||+++                                         ++
T Consensus        30 ~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~ii~~~~~~~~~~~~~~v~e~~~~~~l~~~~~~~~~~l~~~~~~~~~  109 (282)
T cd06643          30 GVLAAAKVIDTKSEEELEDYMVEIDILASCDHPNIVKLLDAFYYENNLWILIEFCAGGAVDAVMLELERPLTEPQIRVVC  109 (282)
T ss_pred             CeEEEEEEeCCCCHHHHHHHHHHHHHHHHCCCCCeeeEEEEEeeCCEEEEEEEecCCCcHHHHHHhcCCCCCHHHHHHHH
Confidence            5678999987665566678999999999999999998                                         24


Q ss_pred             HHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccC-----CCcccc
Q 045449          680 SSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGT-----KGRVST  754 (823)
Q Consensus       680 ~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~-----~~~~~~  754 (823)
                      .|++++|.|+|+.+++||||||+||+++.++.+|++|||+++......  .......|+..|+|||++.     +..++.
T Consensus       110 ~qi~~~L~~LH~~~i~H~dlkp~nili~~~~~~kl~dfg~~~~~~~~~--~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~  187 (282)
T cd06643         110 KQTLEALNYLHENKIIHRDLKAGNILFTLDGDIKLADFGVSAKNTRTI--QRRDSFIGTPYWMAPEVVMCETSKDRPYDY  187 (282)
T ss_pred             HHHHHHHHHHHHCCeeecCCCcccEEEccCCCEEEccccccccccccc--cccccccccccccCHhhccccCCCCCCCCc
Confidence            578889999999999999999999999999999999999987653221  1223456899999999873     345788


Q ss_pred             ccceehhhhhhccccCCCCCcCCC
Q 045449          755 RGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       755 ~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      ++|||||||+++++.+|..||...
T Consensus       188 ~~Dv~slGvil~el~~g~~p~~~~  211 (282)
T cd06643         188 KADVWSLGITLIEMAQIEPPHHEL  211 (282)
T ss_pred             cchhhhHHHHHHHHccCCCCcccc
Confidence            999999999999999999998654

Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration.

>cd05043 PTK_Ryk Pseudokinase domain of Ryk (Receptor related to tyrosine kinase)

Probab=99.82  E-value=7.4e-21  Score=202.13  Aligned_cols=138  Identities=22%  Similarity=0.220  Sum_probs=113.8

Q ss_pred             CeEEEEEEehHhh-HHHHHHHHHHHHHHhhcchhhHHH------------------------------------------
Q 045449          641 GMEVAVKVFHQQY-ERALKSFEDECEVRKRIRHRNLVK------------------------------------------  677 (823)
Q Consensus       641 ~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~------------------------------------------  677 (823)
                      +..||+|++.... ....+.+.+|+.++++++|+||++                                          
T Consensus        35 ~~~v~~k~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~l  114 (280)
T cd05043          35 EEEVFVKTVKDHASEIQVTLLLQESCLLYGLSHQNILPILHVCIEDGEPPFVLYPYMNWGNLKLFLQQCRLGEANNPQAL  114 (280)
T ss_pred             eeEEEEEEccCCCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCCCEEEEEcCCCCcHHHHHHhccccccccccCC
Confidence            3668899886442 344578999999999999999998                                          


Q ss_pred             -------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccCCC
Q 045449          678 -------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKG  750 (823)
Q Consensus       678 -------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~  750 (823)
                             ++.+++.+|+|+|+.+++||||||+||++++++.+|++|||+++.+.............++..|+|||+..+.
T Consensus       115 ~~~~~~~i~~~i~~~l~~LH~~~i~H~di~p~nil~~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~y~apE~~~~~  194 (280)
T cd05043         115 STQQLVHMAIQIACGMSYLHKRGVIHKDIAARNCVIDEELQVKITDNALSRDLFPMDYHCLGDNENRPVKWMALESLVNK  194 (280)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHCCEeecccCHhhEEEcCCCcEEECCCCCcccccCCceEEeCCCCCcchhccCHHHHhcC
Confidence                   2347888999999999999999999999999999999999999876443322122233467789999999888


Q ss_pred             ccccccceehhhhhhccccC-CCCCcCCC
Q 045449          751 RVSTRGDVCSFGIISGGKET-RSMTVGET  778 (823)
Q Consensus       751 ~~~~~~Dv~S~Gvv~~~~~~-~~~~~~~~  778 (823)
                      .++.++|||||||+++++.+ |..||.+.
T Consensus       195 ~~~~~~Di~slG~~l~el~~~g~~p~~~~  223 (280)
T cd05043         195 EYSSASDVWSFGVLLWELMTLGQTPYVEI  223 (280)
T ss_pred             CCCchhhHHHhHHHHHHHhcCCCCCcCcC
Confidence            89999999999999999998 89998764

Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It

>cd06645 STKc_MAP4K3 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 3

Probab=99.82  E-value=5.9e-21  Score=201.35  Aligned_cols=136  Identities=24%  Similarity=0.334  Sum_probs=113.4

Q ss_pred             CeEEEEEEehHhhHHHHHHHHHHHHHHhhcchhhHHH----------------------------------------HHH
Q 045449          641 GMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVK----------------------------------------IIS  680 (823)
Q Consensus       641 ~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~----------------------------------------~~~  680 (823)
                      +..||+|+++.........+.+|+.+++.++||||++                                        ++.
T Consensus        34 ~~~~~ik~~~~~~~~~~~~~~~e~~~~~~l~h~~ii~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~  113 (267)
T cd06645          34 GELAAIKVIKLEPGEDFAVVQQEIIMMKDCKHSNIVAYFGSYLRRDKLWICMEFCGGGSLQDIYHVTGPLSESQIAYVSR  113 (267)
T ss_pred             CcEEEEEEEecCchhHHHHHHHHHHHHHhCCCCCeeeEEEEEEeCCEEEEEEeccCCCcHHHHHHhcCCCCHHHHHHHHH
Confidence            6789999987654444567889999999999999988                                        356


Q ss_pred             HHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccC---CCccccccc
Q 045449          681 SSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGT---KGRVSTRGD  757 (823)
Q Consensus       681 ~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~---~~~~~~~~D  757 (823)
                      |++.+++|+|+.+++||||||+||+++.++.+||+|||++.......  .......|+..|+|||++.   ...++.++|
T Consensus       114 ~i~~~l~~lH~~~i~H~dlkp~nili~~~~~~~l~dfg~~~~~~~~~--~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~D  191 (267)
T cd06645         114 ETLQGLYYLHSKGKMHRDIKGANILLTDNGHVKLADFGVSAQITATI--AKRKSFIGTPYWMAPEVAAVERKGGYNQLCD  191 (267)
T ss_pred             HHHHHHHHHHHCCeecCCCCHHHEEECCCCCEEECcceeeeEccCcc--cccccccCcccccChhhhccccCCCCCchhh
Confidence            88899999999999999999999999999999999999987654221  1223457899999999874   456889999


Q ss_pred             eehhhhhhccccCCCCCcCCC
Q 045449          758 VCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       758 v~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      |||+||+++++.++..|+...
T Consensus       192 vwSlG~il~~l~~~~~p~~~~  212 (267)
T cd06645         192 IWAVGITAIELAELQPPMFDL  212 (267)
T ss_pred             hHHHHHHHHHHhcCCCCcccc
Confidence            999999999999999988543

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd06646 STKc_MAP4K5 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5

Probab=99.82  E-value=1e-20  Score=199.57  Aligned_cols=136  Identities=24%  Similarity=0.322  Sum_probs=112.0

Q ss_pred             CeEEEEEEehHhhHHHHHHHHHHHHHHhhcchhhHHH----------------------------------------HHH
Q 045449          641 GMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVK----------------------------------------IIS  680 (823)
Q Consensus       641 ~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~----------------------------------------~~~  680 (823)
                      +..||+|++........+.+.+|+.++.+++||||++                                        ++.
T Consensus        34 ~~~~aik~~~~~~~~~~~~~~~e~~~l~~~~h~~ii~~~~~~~~~~~~~iv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~  113 (267)
T cd06646          34 GELAAVKIIKLEPGDDFSLIQQEIFMVKECKHCNIVAYFGSYLSREKLWICMEYCGGGSLQDIYHVTGPLSELQIAYVCR  113 (267)
T ss_pred             CeEEEEEEEecCccchHHHHHHHHHHHHhcCCCCeeeeeEEEEeCCEEEEEEeCCCCCcHHHHHHhcCCCCHHHHHHHHH
Confidence            5679999987554444467889999999999999998                                        246


Q ss_pred             HHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccC---CCccccccc
Q 045449          681 SSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGT---KGRVSTRGD  757 (823)
Q Consensus       681 ~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~---~~~~~~~~D  757 (823)
                      |++++|.|+|+.+|+|||+||+||+++.++.+||+|||+++.......  ......|++.|+|||.+.   ...++.++|
T Consensus       114 qi~~~l~~lH~~~i~H~dl~p~nill~~~~~~~l~dfg~~~~~~~~~~--~~~~~~~~~~y~~PE~~~~~~~~~~~~~~D  191 (267)
T cd06646         114 ETLQGLAYLHSKGKMHRDIKGANILLTDNGDVKLADFGVAAKITATIA--KRKSFIGTPYWMAPEVAAVEKNGGYNQLCD  191 (267)
T ss_pred             HHHHHHHHHHHCCccccCCCHHHEEECCCCCEEECcCccceeeccccc--ccCccccCccccCHhHcccccCCCCcchhh
Confidence            788899999999999999999999999999999999999986542211  123356889999999874   345788999


Q ss_pred             eehhhhhhccccCCCCCcCCC
Q 045449          758 VCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       758 v~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      |||+||+++++.+|..|+...
T Consensus       192 vws~G~il~el~~g~~p~~~~  212 (267)
T cd06646         192 IWAVGITAIELAELQPPMFDL  212 (267)
T ss_pred             HHHHHHHHHHHHhCCCCcccc
Confidence            999999999999999988543

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd05071 PTKc_Src Catalytic domain of the Protein Tyrosine Kinase, Src

Probab=99.82  E-value=6.9e-21  Score=200.30  Aligned_cols=148  Identities=26%  Similarity=0.436  Sum_probs=117.9

Q ss_pred             cCCccceeeccC-----------CeEEEEEEehHhhHHHHHHHHHHHHHHhhcchhhHHH--------------------
Q 045449          629 RFSENNLIGIGN-----------GMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVK--------------------  677 (823)
Q Consensus       629 ~f~~~~~lg~g~-----------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~--------------------  677 (823)
                      +|...+.+|.|+           ...||+|++..... ..++|.+|++++++++|+||++                    
T Consensus         7 ~~~~~~~lg~g~~~~v~~~~~~~~~~valK~~~~~~~-~~~~~~~E~~~l~~l~~~~i~~~~~~~~~~~~~lv~e~~~~~   85 (262)
T cd05071           7 SLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTM-SPEAFLQEAQVMKKLRHEKLVQLYAVVSEEPIYIVTEYMSKG   85 (262)
T ss_pred             HeeEeeecCCCCCCcEEEEEecCCceEEEEecccCcc-CHHHHHHHHHHHHhCCCCCcceEEEEECCCCcEEEEEcCCCC
Confidence            445555565553           24589999875332 2357999999999999999997                    


Q ss_pred             ---------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccc
Q 045449          678 ---------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTL  736 (823)
Q Consensus       678 ---------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~  736 (823)
                                           ++.+++++|+++|+.+++||||||+||++++++.+||+|||.++........ ......
T Consensus        86 ~L~~~~~~~~~~~~~~~~~~~~~~~l~~aL~~lH~~~i~H~dl~p~Nill~~~~~~~L~dfg~~~~~~~~~~~-~~~~~~  164 (262)
T cd05071          86 SLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYT-ARQGAK  164 (262)
T ss_pred             cHHHHHhhccccCCCHHHHHHHHHHHHHHHHHHHHCCccccccCcccEEEcCCCcEEeccCCceeeccccccc-cccCCc
Confidence                                 2467888999999999999999999999999999999999999876433221 122334


Q ss_pred             cCCCcCcccccCCCccccccceehhhhhhccccC-CCCCcCCC
Q 045449          737 ATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKET-RSMTVGET  778 (823)
Q Consensus       737 gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~-~~~~~~~~  778 (823)
                      ++..|+|||+..+..++.++|||||||++|++++ |..||.+.
T Consensus       165 ~~~~y~~PE~~~~~~~~~~~DvwslG~~l~ellt~g~~p~~~~  207 (262)
T cd05071         165 FPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGM  207 (262)
T ss_pred             ccceecCHhHhccCCCCchhhHHHHHHHHHHHHcCCCCCCCCC
Confidence            6778999999988889999999999999999999 77787654

Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is invo

>cd06613 STKc_MAP4K3_like Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases

Probab=99.82  E-value=9.9e-21  Score=198.86  Aligned_cols=149  Identities=26%  Similarity=0.357  Sum_probs=122.8

Q ss_pred             ccCCccceeeccC------------CeEEEEEEehHhhHHHHHHHHHHHHHHhhcchhhHHH------------------
Q 045449          628 DRFSENNLIGIGN------------GMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVK------------------  677 (823)
Q Consensus       628 ~~f~~~~~lg~g~------------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~------------------  677 (823)
                      ++|...+.+|.|+            +..+|+|++........+.+.+|++++++++||||++                  
T Consensus         3 ~~~~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~l~~e~~   82 (262)
T cd06613           3 EDYELIQRIGSGTYGDVYKARDIATGELVAIKVIKLEPGDDFEIIQQEISMLKECRHPNIVAYFGSYLRRDKLWIVMEYC   82 (262)
T ss_pred             cceEEEEEecCCCceEEEEeEecCCCCEEEEEEEEcCchhhHHHHHHHHHHHHhCCCCChhceEEEEEeCCEEEEEEeCC
Confidence            3455555666553            4668999987665556688999999999999999998                  


Q ss_pred             -----------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccc
Q 045449          678 -----------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQ  734 (823)
Q Consensus       678 -----------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~  734 (823)
                                             ++.|++.+|.|+|+.+++||||||+||+++.++.+||+|||.+........  ....
T Consensus        83 ~~~~l~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lh~~~i~h~dl~p~ni~i~~~~~~~l~d~g~~~~~~~~~~--~~~~  160 (262)
T cd06613          83 GGGSLQDIYQVTRGPLSELQIAYVCRETLKGLAYLHETGKIHRDIKGANILLTEDGDVKLADFGVSAQLTATIA--KRKS  160 (262)
T ss_pred             CCCcHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHhCCceecCCChhhEEECCCCCEEECccccchhhhhhhh--cccc
Confidence                                   356788899999999999999999999999999999999999986543211  1234


Q ss_pred             cccCCCcCcccccCCC---ccccccceehhhhhhccccCCCCCcCCC
Q 045449          735 TLATIGYMAPEYGTKG---RVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       735 ~~gt~~y~aPE~~~~~---~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      ..++..|+|||.+...   .++.++|||||||++++|.+|..|+.+.
T Consensus       161 ~~~~~~y~~Pe~~~~~~~~~~~~~~Di~slG~~l~~~~tg~~p~~~~  207 (262)
T cd06613         161 FIGTPYWMAPEVAAVERKGGYDGKCDIWALGITAIELAELQPPMFDL  207 (262)
T ss_pred             ccCCccccCchhhcccccCCcCchhhhHHHHHHHHHHHhCCCCCCCC
Confidence            5688999999998776   7899999999999999999999998764

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activ

>cd06628 STKc_MAPKKK_Byr2_like Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

Probab=99.82  E-value=1.4e-20  Score=198.40  Aligned_cols=138  Identities=27%  Similarity=0.370  Sum_probs=114.1

Q ss_pred             CeEEEEEEehHhh---------HHHHHHHHHHHHHHhhcchhhHHH----------------------------------
Q 045449          641 GMEVAVKVFHQQY---------ERALKSFEDECEVRKRIRHRNLVK----------------------------------  677 (823)
Q Consensus       641 ~~~vavK~~~~~~---------~~~~~~~~~E~~~l~~l~h~niv~----------------------------------  677 (823)
                      +..||+|.+....         ....+.+.+|++++++++||||++                                  
T Consensus        25 ~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~l~  104 (267)
T cd06628          25 GELMAVKQVELPSVSASSKDRKRSMLDALAREIALLKELQHENIVQYLGSSLDADHLNIFLEYVPGGSVAALLNNYGAFE  104 (267)
T ss_pred             CcEEEEEEecCCCcccchhHHHHHHHHHHHHHHHHHHhcCCCCeeeEEEEEEeCCccEEEEEecCCCCHHHHHHhccCcc
Confidence            5679999885321         233467899999999999999998                                  


Q ss_pred             ------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCcc----ccccccccCCCcCccccc
Q 045449          678 ------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQL----SKQTQTLATIGYMAPEYG  747 (823)
Q Consensus       678 ------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~----~~~~~~~gt~~y~aPE~~  747 (823)
                            ++.|++.+|.++|+.+++||||||+||+++.++.+||+|||.++........    .......|+..|+|||++
T Consensus       105 ~~~~~~~~~~l~~~l~~lH~~~ivH~di~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~y~~pe~~  184 (267)
T cd06628         105 ETLVRNFVRQILKGLNYLHNRGIIHRDIKGANILVDNKGGIKISDFGISKKLEANSLSTKTNGARPSLQGSVFWMAPEVV  184 (267)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCcccccCCHHHEEEcCCCCEEecccCCCcccccccccCCccccccccCCCcCccChhHh
Confidence                  3568888999999999999999999999999999999999999876532111    111234588999999999


Q ss_pred             CCCccccccceehhhhhhccccCCCCCcCCC
Q 045449          748 TKGRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       748 ~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      .+..++.++||||+||+++++.+|..||.+.
T Consensus       185 ~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~  215 (267)
T cd06628         185 KQTSYTRKADIWSLGCLVVEMLTGKHPFPDC  215 (267)
T ss_pred             ccCCCCchhhhHHHHHHHHHHhhCCCCCCCc
Confidence            8888999999999999999999999999764

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate

>cd05095 PTKc_DDR2 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2

Probab=99.82  E-value=1.1e-20  Score=202.54  Aligned_cols=138  Identities=23%  Similarity=0.357  Sum_probs=111.9

Q ss_pred             CeEEEEEEehHhh-HHHHHHHHHHHHHHhhcchhhHHH------------------------------------------
Q 045449          641 GMEVAVKVFHQQY-ERALKSFEDECEVRKRIRHRNLVK------------------------------------------  677 (823)
Q Consensus       641 ~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~------------------------------------------  677 (823)
                      ...||+|++.... ....++|.+|++++++++|+||++                                          
T Consensus        46 ~~~~a~K~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~  125 (296)
T cd05095          46 PVLVAVKMLREDANKNARNDFLKEIKIMSRLKDPNIIRLLAVCITSDPLCMITEYMENGDLNQFLSRHEPQEAAEKADVV  125 (296)
T ss_pred             eeEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEecCCccEEEEEeCCCCcHHHHHHhcCccccccccccc
Confidence            4569999997543 445678999999999999999987                                          


Q ss_pred             ---------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccC
Q 045449          678 ---------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGT  748 (823)
Q Consensus       678 ---------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~  748 (823)
                               ++.|++.+|.|+|+.+++||||||+||+++.++.+||+|||+++.+.............+++.|+|||+..
T Consensus       126 ~~~~~~~~~~~~~i~~al~~lH~~~i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~  205 (296)
T cd05095         126 TISYSTLIFMATQIASGMKYLSSLNFVHRDLATRNCLVGKNYTIKIADFGMSRNLYSGDYYRIQGRAVLPIRWMSWESIL  205 (296)
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHHCCeecccCChheEEEcCCCCEEeccCcccccccCCcceeccCcCcCccccCCHHHHh
Confidence                     13577888999999999999999999999999999999999998654332222222234567899999988


Q ss_pred             CCccccccceehhhhhhccccC--CCCCcCCC
Q 045449          749 KGRVSTRGDVCSFGIISGGKET--RSMTVGET  778 (823)
Q Consensus       749 ~~~~~~~~Dv~S~Gvv~~~~~~--~~~~~~~~  778 (823)
                      ++.++.++|||||||++|++.+  +..||...
T Consensus       206 ~~~~~~~~DiwSlG~~l~el~~~~~~~p~~~~  237 (296)
T cd05095         206 LGKFTTASDVWAFGVTLWEILTLCKEQPYSQL  237 (296)
T ss_pred             cCCccchhhhhHHHHHHHHHHHhCCCCCcccc
Confidence            8889999999999999999987  66777543

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues wit

>cd06609 STKc_MST3_like Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

Probab=99.82  E-value=8.7e-21  Score=200.90  Aligned_cols=136  Identities=26%  Similarity=0.349  Sum_probs=116.5

Q ss_pred             CeEEEEEEehHhh-HHHHHHHHHHHHHHhhcchhhHHH---------------------------------------HHH
Q 045449          641 GMEVAVKVFHQQY-ERALKSFEDECEVRKRIRHRNLVK---------------------------------------IIS  680 (823)
Q Consensus       641 ~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~---------------------------------------~~~  680 (823)
                      +..||+|++.... ......+.+|++++++++|+|+++                                       ++.
T Consensus        26 ~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~  105 (274)
T cd06609          26 NQVVAIKVIDLEEAEDEIEDIQQEIQFLSQCRSPYITKYYGSFLKGSKLWIIMEYCGGGSCLDLLKPGKLDETYIAFILR  105 (274)
T ss_pred             CeEEEEEEeeccccchHHHHHHHHHHHHHHcCCCCeeeeeEEEEECCeEEEEEEeeCCCcHHHHHhhcCCCHHHHHHHHH
Confidence            6789999986543 344567899999999999999998                                       357


Q ss_pred             HHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccCCCccccccceeh
Q 045449          681 SSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCS  760 (823)
Q Consensus       681 ~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S  760 (823)
                      |++.++.|+|+.+++||||+|+||++++++.++++|||+++......  .......|++.|+|||+..+..++.++||||
T Consensus       106 ql~~~l~~lh~~~i~h~dl~p~ni~i~~~~~~~l~d~g~~~~~~~~~--~~~~~~~~~~~y~~PE~~~~~~~~~~sDv~s  183 (274)
T cd06609         106 EVLLGLEYLHEEGKIHRDIKAANILLSEEGDVKLADFGVSGQLTSTM--SKRNTFVGTPFWMAPEVIKQSGYDEKADIWS  183 (274)
T ss_pred             HHHHHHHHHHhCCcccCCCCHHHEEECCCCCEEEcccccceeecccc--cccccccCCccccChhhhccCCCCchhhHHH
Confidence            88899999999999999999999999999999999999998765432  1223456889999999998888999999999


Q ss_pred             hhhhhccccCCCCCcCCC
Q 045449          761 FGIISGGKETRSMTVGET  778 (823)
Q Consensus       761 ~Gvv~~~~~~~~~~~~~~  778 (823)
                      |||+++++++|..||...
T Consensus       184 lG~il~~l~tg~~p~~~~  201 (274)
T cd06609         184 LGITAIELAKGEPPLSDL  201 (274)
T ss_pred             HHHHHHHHHhCCCCcccC
Confidence            999999999999998653

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN)

>cd05101 PTKc_FGFR2 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2

Probab=99.82  E-value=1.3e-20  Score=202.89  Aligned_cols=137  Identities=29%  Similarity=0.380  Sum_probs=111.5

Q ss_pred             eEEEEEEehHhh-HHHHHHHHHHHHHHhhc-chhhHHHH-----------------------------------------
Q 045449          642 MEVAVKVFHQQY-ERALKSFEDECEVRKRI-RHRNLVKI-----------------------------------------  678 (823)
Q Consensus       642 ~~vavK~~~~~~-~~~~~~~~~E~~~l~~l-~h~niv~~-----------------------------------------  678 (823)
                      ..||+|.+.... ....+++.+|+.+++++ +||||+++                                         
T Consensus        48 ~~v~iK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~  127 (304)
T cd05101          48 VTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDIA  127 (304)
T ss_pred             eeEEeeecccccchHHHHHHHHHHHHHHhhccCCCchheeEEEecCCceEEEEecCCCCcHHHHHHhcCCcccccccccc
Confidence            358889886443 34457899999999999 89999981                                         


Q ss_pred             ---------------HHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCc
Q 045449          679 ---------------ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMA  743 (823)
Q Consensus       679 ---------------~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~a  743 (823)
                                     +.|++++|.|+|+.+++||||||+||++++++.+||+|||+++...............+++.|+|
T Consensus       128 ~~~~~~~~~~~~~~~~~qi~~al~~LH~~givH~dlkp~Nili~~~~~~kl~D~g~~~~~~~~~~~~~~~~~~~~~~y~a  207 (304)
T cd05101         128 RVPDEQMTFKDLVSCTYQVARGMEYLASQKCIHRDLAARNVLVTENNVMKIADFGLARDVNNIDYYKKTTNGRLPVKWMA  207 (304)
T ss_pred             cCCcccccHHHHHHHHHHHHHHHHHHHHCCeeecccccceEEEcCCCcEEECCCccceecccccccccccCCCCCceeeC
Confidence                           23788999999999999999999999999999999999999987644332222233456788999


Q ss_pred             ccccCCCccccccceehhhhhhccccC-CCCCcCCC
Q 045449          744 PEYGTKGRVSTRGDVCSFGIISGGKET-RSMTVGET  778 (823)
Q Consensus       744 PE~~~~~~~~~~~Dv~S~Gvv~~~~~~-~~~~~~~~  778 (823)
                      ||++.+..++.++|||||||+++++.+ |..|+...
T Consensus       208 PE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~  243 (304)
T cd05101         208 PEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGI  243 (304)
T ss_pred             chhhccCCCCchhhHHHHHHHHHHHHcCCCCCcccC
Confidence            999988889999999999999999987 66776543

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd06655 STKc_PAK2 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2

Probab=99.82  E-value=5.9e-21  Score=204.57  Aligned_cols=148  Identities=28%  Similarity=0.402  Sum_probs=122.4

Q ss_pred             cCCccceeeccC------------CeEEEEEEehHhhHHHHHHHHHHHHHHhhcchhhHHH-------------------
Q 045449          629 RFSENNLIGIGN------------GMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVK-------------------  677 (823)
Q Consensus       629 ~f~~~~~lg~g~------------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~-------------------  677 (823)
                      +|+..+.+|.|+            +..||+|.+........+.+.+|++++++++|||+++                   
T Consensus        20 ~y~~~~~lg~g~~g~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~   99 (296)
T cd06655          20 KYTRYEKIGQGASGTVFTAIDVATGQEVAIKQINLQKQPKKELIINEILVMKELKNPNIVNFLDSFLVGDELFVVMEYLA   99 (296)
T ss_pred             eEEEEEEEecCCCeEEEEEEEcCCCcEEEEEEEecccCchHHHHHHHHHHHHhcCCCceeeeeeeEecCceEEEEEEecC
Confidence            455555666553            5779999887554445578899999999999999998                   


Q ss_pred             --------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCcccccccccc
Q 045449          678 --------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLA  737 (823)
Q Consensus       678 --------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~g  737 (823)
                                          ++.+++.+++++|+.+++||||||+||+++.++.+||+|||+++.......  ......|
T Consensus       100 ~~~L~~~~~~~~l~~~~~~~i~~~l~~al~~LH~~~i~H~dL~p~Nili~~~~~~kl~dfg~~~~~~~~~~--~~~~~~~  177 (296)
T cd06655         100 GGSLTDVVTETCMDEAQIAAVCRECLQALEFLHANQVIHRDIKSDNVLLGMDGSVKLTDFGFCAQITPEQS--KRSTMVG  177 (296)
T ss_pred             CCcHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCCEEEccCccchhcccccc--cCCCcCC
Confidence                                346788899999999999999999999999999999999999886543322  1223468


Q ss_pred             CCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCC
Q 045449          738 TIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       738 t~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      +..|+|||.+.+..++.++|||||||++|++++|..||...
T Consensus       178 ~~~y~aPE~~~~~~~~~~~Dv~slGvil~~lltg~~pf~~~  218 (296)
T cd06655         178 TPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMVEGEPPYLNE  218 (296)
T ss_pred             CccccCcchhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Confidence            89999999998888999999999999999999999998654

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd05051 PTKc_DDR Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors

Probab=99.81  E-value=8.8e-21  Score=203.26  Aligned_cols=138  Identities=25%  Similarity=0.356  Sum_probs=112.7

Q ss_pred             CeEEEEEEehHhh-HHHHHHHHHHHHHHhhcchhhHHH------------------------------------------
Q 045449          641 GMEVAVKVFHQQY-ERALKSFEDECEVRKRIRHRNLVK------------------------------------------  677 (823)
Q Consensus       641 ~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~------------------------------------------  677 (823)
                      +..||+|++.... ....++|.+|++++++++||||++                                          
T Consensus        46 ~~~va~K~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~  125 (296)
T cd05051          46 PVLVAVKVLRPDASDNAREDFLKEVKILSRLSDPNIARLLGVCTVDPPLCMIMEYMENGDLNQFLQKHVAETSGLACNSK  125 (296)
T ss_pred             ceeEEEEEecCccCHHHHHHHHHHHHHHHhcCCCCEeEEEEEEecCCCcEEEEecCCCCCHHHHHHhcccccccccccCC
Confidence            3568999987543 345678999999999999999877                                          


Q ss_pred             ---------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccC
Q 045449          678 ---------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGT  748 (823)
Q Consensus       678 ---------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~  748 (823)
                               ++.|++++|.|+|+.+|+||||||+||+++.++.++|+|||+++...............+++.|+|||+..
T Consensus       126 ~~~~~~~~~~~~~i~~al~~LH~~~i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~  205 (296)
T cd05051         126 SLSFSTLLYMATQIASGMRYLESLNFVHRDLATRNCLVGKNYTIKIADFGMSRNLYSSDYYRVQGRAPLPIRWMAWESVL  205 (296)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHcCccccccchhceeecCCCceEEccccceeecccCcceeecCcCCCCceecCHHHhh
Confidence                     23577888999999999999999999999999999999999998754433222233455778999999998


Q ss_pred             CCccccccceehhhhhhccccC--CCCCcCCC
Q 045449          749 KGRVSTRGDVCSFGIISGGKET--RSMTVGET  778 (823)
Q Consensus       749 ~~~~~~~~Dv~S~Gvv~~~~~~--~~~~~~~~  778 (823)
                      ++.++.++|||||||++|++.+  +..|+...
T Consensus       206 ~~~~~~~~Dv~slG~~l~el~~~~~~~p~~~~  237 (296)
T cd05051         206 LGKFTTKSDVWAFGVTLWEILTLCREQPYEHL  237 (296)
T ss_pred             cCCCCccchhhhhHHHHHHHHhcCCCCCCCCc
Confidence            8889999999999999999876  56666543

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linke

>cd05065 PTKc_EphR_B Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors

Probab=99.81  E-value=1.2e-20  Score=199.36  Aligned_cols=137  Identities=22%  Similarity=0.394  Sum_probs=110.3

Q ss_pred             eEEEEEEehHhh-HHHHHHHHHHHHHHhhcchhhHHH-----------------------------------------HH
Q 045449          642 MEVAVKVFHQQY-ERALKSFEDECEVRKRIRHRNLVK-----------------------------------------II  679 (823)
Q Consensus       642 ~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~-----------------------------------------~~  679 (823)
                      ..||||++.... ....++|..|++++++++||||++                                         ++
T Consensus        33 ~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~  112 (269)
T cd05065          33 IFVAIKTLKSGYTEKQRRDFLSEASIMGQFDHPNIIHLEGVVTKSRPVMIITEFMENGALDSFLRQNDGQFTVIQLVGML  112 (269)
T ss_pred             eeEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCcCcceEEEEECCCCceEEEEecCCCCcHHHHHhhCCCCCCHHHHHHHH
Confidence            359999987542 445578999999999999999998                                         24


Q ss_pred             HHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccc-c--ccCCCcCcccccCCCcccccc
Q 045449          680 SSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQ-T--LATIGYMAPEYGTKGRVSTRG  756 (823)
Q Consensus       680 ~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~-~--~gt~~y~aPE~~~~~~~~~~~  756 (823)
                      .|++.+|.|+|+.+++||||||+||+++.++.+|++|||+++............. .  ..+..|+|||+..+..++.++
T Consensus       113 ~~l~~al~~lH~~g~~H~dl~p~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~  192 (269)
T cd05065         113 RGIAAGMKYLSEMNYVHRDLAARNILVNSNLVCKVSDFGLSRFLEDDTSDPTYTSSLGGKIPIRWTAPEAIAYRKFTSAS  192 (269)
T ss_pred             HHHHHHHHHHHHCCEeecccChheEEEcCCCcEEECCCccccccccCccccccccccCCCcceeecCHhHhccCcccchh
Confidence            5788899999999999999999999999999999999999986543222111111 1  124579999999988999999


Q ss_pred             ceehhhhhhccccC-CCCCcCCC
Q 045449          757 DVCSFGIISGGKET-RSMTVGET  778 (823)
Q Consensus       757 Dv~S~Gvv~~~~~~-~~~~~~~~  778 (823)
                      |||||||+++++++ |..||.+.
T Consensus       193 DvwslG~~l~e~l~~g~~p~~~~  215 (269)
T cd05065         193 DVWSYGIVMWEVMSYGERPYWDM  215 (269)
T ss_pred             hhhhhHHHHHHHhcCCCCCCCCC
Confidence            99999999999775 88888654

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephr

>cd06659 STKc_PAK6 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6

Probab=99.81  E-value=9.3e-21  Score=203.15  Aligned_cols=135  Identities=27%  Similarity=0.351  Sum_probs=115.4

Q ss_pred             CeEEEEEEehHhhHHHHHHHHHHHHHHhhcchhhHHH---------------------------------------HHHH
Q 045449          641 GMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVK---------------------------------------IISS  681 (823)
Q Consensus       641 ~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~---------------------------------------~~~~  681 (823)
                      +..||||++........+.+.+|+.++.+++||||++                                       ++.|
T Consensus        46 ~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~~~~iv~e~~~~~~L~~~~~~~~~~~~~~~~~~~q  125 (297)
T cd06659          46 GRQVAVKMMDLRKQQRRELLFNEVVIMRDYQHQNVVEMYKSYLVGEELWVLMEFLQGGALTDIVSQTRLNEEQIATVCES  125 (297)
T ss_pred             CCEEEEEEEEecccchHHHHHHHHHHHHhCCCCchhhhhhheeeCCeEEEEEecCCCCCHHHHHhhcCCCHHHHHHHHHH
Confidence            6789999986554445567899999999999999998                                       2468


Q ss_pred             HHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccCCCccccccceehh
Q 045449          682 SLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSF  761 (823)
Q Consensus       682 ~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~  761 (823)
                      ++++|.|+|+.+++||||||+||+++.++.+||+|||+++.......  ......|+..|+|||++.+..++.++|||||
T Consensus       126 i~~~L~~LH~~~ivH~dl~p~Nill~~~~~~kL~dfg~~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~sl  203 (297)
T cd06659         126 VLQALCYLHSQGVIHRDIKSDSILLTLDGRVKLSDFGFCAQISKDVP--KRKSLVGTPYWMAPEVISRTPYGTEVDIWSL  203 (297)
T ss_pred             HHHHHHHHHhCCeecCCCCHHHeEEccCCcEEEeechhHhhcccccc--cccceecCccccCHHHHccCCCCchhhHHHH
Confidence            88999999999999999999999999999999999999876543221  2234568999999999988889999999999


Q ss_pred             hhhhccccCCCCCcCC
Q 045449          762 GIISGGKETRSMTVGE  777 (823)
Q Consensus       762 Gvv~~~~~~~~~~~~~  777 (823)
                      ||+++++.+|..||..
T Consensus       204 G~il~el~~g~~p~~~  219 (297)
T cd06659         204 GIMVIEMVDGEPPYFS  219 (297)
T ss_pred             HHHHHHHHhCCCCCCC
Confidence            9999999999999854

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role i

>cd06644 STKc_STK10_LOK Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase

Probab=99.81  E-value=1.7e-20  Score=200.58  Aligned_cols=136  Identities=30%  Similarity=0.342  Sum_probs=114.1

Q ss_pred             CeEEEEEEehHhhHHHHHHHHHHHHHHhhcchhhHHH-----------------------------------------HH
Q 045449          641 GMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVK-----------------------------------------II  679 (823)
Q Consensus       641 ~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~-----------------------------------------~~  679 (823)
                      +..||+|++........+.+.+|++++++++|+||++                                         ++
T Consensus        37 ~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~l~~~~~~~~~  116 (292)
T cd06644          37 GALAAAKVIETKSEEELEDYMVEIEILATCNHPYIVKLLGAFYWDGKLWIMIEFCPGGAVDAIMLELDRGLTEPQIQVIC  116 (292)
T ss_pred             CceEEEEEeccCCHHHHHHHHHHHHHHHhCCCCcEeeeEEEEEeCCeEEEEEecCCCCcHHHHHHhhcCCCCHHHHHHHH
Confidence            5779999987666666788999999999999999998                                         35


Q ss_pred             HHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccC-----CCcccc
Q 045449          680 SSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGT-----KGRVST  754 (823)
Q Consensus       680 ~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~-----~~~~~~  754 (823)
                      .|++.+++|+|+.+++|||+||+||+++.++.+||+|||+++......  .......+++.|+|||++.     ...++.
T Consensus       117 ~ql~~~l~~lH~~~i~H~dlkp~Nili~~~~~~kl~dfg~~~~~~~~~--~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~  194 (292)
T cd06644         117 RQMLEALQYLHSMKIIHRDLKAGNVLLTLDGDIKLADFGVSAKNVKTL--QRRDSFIGTPYWMAPEVVMCETMKDTPYDY  194 (292)
T ss_pred             HHHHHHHHHHhcCCeeecCCCcceEEEcCCCCEEEccCccceeccccc--cccceecCCccccCceeeccccccCCCCCc
Confidence            678899999999999999999999999999999999999987643221  1123456889999999874     345788


Q ss_pred             ccceehhhhhhccccCCCCCcCCC
Q 045449          755 RGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       755 ~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      ++|||||||++|++.+|..||...
T Consensus       195 ~~Dv~slG~il~el~~g~~p~~~~  218 (292)
T cd06644         195 KADIWSLGITLIEMAQIEPPHHEL  218 (292)
T ss_pred             hhhhHhHHHHHHHHhcCCCCCccc
Confidence            999999999999999999998653

Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types.

>cd05580 STKc_PKA Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

Probab=99.81  E-value=2.3e-20  Score=199.46  Aligned_cols=145  Identities=28%  Similarity=0.342  Sum_probs=121.5

Q ss_pred             cCCccceeeccC------------CeEEEEEEehHhh---HHHHHHHHHHHHHHhhcchhhHHH----------------
Q 045449          629 RFSENNLIGIGN------------GMEVAVKVFHQQY---ERALKSFEDECEVRKRIRHRNLVK----------------  677 (823)
Q Consensus       629 ~f~~~~~lg~g~------------~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~----------------  677 (823)
                      +|...+.||.|+            ++.||+|++....   ....+.+.+|++++++++||||++                
T Consensus         2 ~y~~~~~ig~g~~~~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e   81 (290)
T cd05580           2 DFEFIKTLGTGSFGRVMLVRHKGSGKYYALKILSKAKIVKLKQVEHVLNEKRILQSIRHPFLVNLYGSFQDDSNLYLVME   81 (290)
T ss_pred             ceEEEEEeecCCCeEEEEEEEcCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCccceeeEEEcCCeEEEEEe
Confidence            455556666654            5779999986543   234567899999999999999998                


Q ss_pred             ------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCcccccc
Q 045449          678 ------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQT  733 (823)
Q Consensus       678 ------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~  733 (823)
                                              ++.|++++|.++|+.+++||||+|+||+++.++.+||+|||+++.....     ..
T Consensus        82 ~~~~~~L~~~~~~~~~l~~~~~~~~~~qil~~l~~lH~~~i~H~dl~p~nili~~~~~~kl~dfg~~~~~~~~-----~~  156 (290)
T cd05580          82 YVPGGELFSHLRKSGRFPEPVARFYAAQVVLALEYLHSLDIVYRDLKPENLLLDSDGYIKITDFGFAKRVKGR-----TY  156 (290)
T ss_pred             cCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCEecCCCCHHHEEECCCCCEEEeeCCCccccCCC-----CC
Confidence                                    3568899999999999999999999999999999999999999876433     22


Q ss_pred             ccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCC
Q 045449          734 QTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       734 ~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      ...|++.|+|||.+.+..++.++||||+|++++++.+|..||...
T Consensus       157 ~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~  201 (290)
T cd05580         157 TLCGTPEYLAPEIILSKGYGKAVDWWALGILIYEMLAGYPPFFDD  201 (290)
T ss_pred             CCCCCccccChhhhcCCCCCccccHHHHHHHHHHHHhCCCCCCCC
Confidence            346899999999998888899999999999999999999998654

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubi

>cd05113 PTKc_Btk_Bmx Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

Probab=99.81  E-value=7.6e-21  Score=199.21  Aligned_cols=136  Identities=22%  Similarity=0.364  Sum_probs=112.1

Q ss_pred             eEEEEEEehHhhHHHHHHHHHHHHHHhhcchhhHHH-----------------------------------------HHH
Q 045449          642 MEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVK-----------------------------------------IIS  680 (823)
Q Consensus       642 ~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~-----------------------------------------~~~  680 (823)
                      ..||||.+.... ...++|.+|++++.+++||||++                                         ++.
T Consensus        29 ~~~aik~~~~~~-~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~l~~~i~~~~~~~~~~~~~~~~~  107 (256)
T cd05113          29 YDVAIKMIKEGS-MSEDEFIEEAKVMMKLSHEKLVQLYGVCTKQRPIYIVTEYMSNGCLLNYLREHGKRFQPSQLLEMCK  107 (256)
T ss_pred             CcEEEEEcCCCc-ccHHHHHHHHHHHhcCCCCCeeeEEEEEccCCCcEEEEEcCCCCcHHHHHHhcCCCCCHHHHHHHHH
Confidence            459999887443 23467999999999999999998                                         356


Q ss_pred             HHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccCCCccccccceeh
Q 045449          681 SSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCS  760 (823)
Q Consensus       681 ~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S  760 (823)
                      |++.+|+|+|+.+++||||||+||+++.++.+||+|||.++....... .......++..|+|||+..+..++.++||||
T Consensus       108 ~i~~~l~~lH~~~i~H~dl~p~nili~~~~~~kl~d~g~~~~~~~~~~-~~~~~~~~~~~y~~pe~~~~~~~~~~~Di~s  186 (256)
T cd05113         108 DVCEGMAYLESKQFIHRDLAARNCLVDDQGCVKVSDFGLSRYVLDDEY-TSSVGSKFPVRWSPPEVLLYSKFSSKSDVWA  186 (256)
T ss_pred             HHHHHHHHHHhCCeeccccCcceEEEcCCCCEEECCCccceecCCCce-eecCCCccChhhCCHHHHhcCcccchhHHHH
Confidence            888999999999999999999999999999999999999986543321 1122234567899999998888999999999


Q ss_pred             hhhhhccccC-CCCCcCCCc
Q 045449          761 FGIISGGKET-RSMTVGETC  779 (823)
Q Consensus       761 ~Gvv~~~~~~-~~~~~~~~~  779 (823)
                      |||++|++.+ |..||....
T Consensus       187 lG~~l~~l~~~g~~p~~~~~  206 (256)
T cd05113         187 FGVLMWEVYSLGKMPYERFN  206 (256)
T ss_pred             HHHHHHHHhcCCCCCcCcCC
Confidence            9999999998 888886543

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds

>cd05114 PTKc_Tec_Rlk Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase

Probab=99.81  E-value=8.9e-21  Score=198.66  Aligned_cols=148  Identities=22%  Similarity=0.349  Sum_probs=118.1

Q ss_pred             cCCccceeeccC-----------CeEEEEEEehHhhHHHHHHHHHHHHHHhhcchhhHHH--------------------
Q 045449          629 RFSENNLIGIGN-----------GMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVK--------------------  677 (823)
Q Consensus       629 ~f~~~~~lg~g~-----------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~--------------------  677 (823)
                      +|...+.+|+|+           +..||+|.+.... ...++|.+|++++++++||||++                    
T Consensus         5 ~~~~~~~lg~G~~~~vy~~~~~~~~~~a~K~~~~~~-~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~iv~e~~~~   83 (256)
T cd05114           5 ELTFMKELGSGQFGVVHLGKWRAQIKVAIKAINEGA-MSEEDFIEEAKVMMKLSHPKLVQLYGVCTQQKPLYIVTEFMEN   83 (256)
T ss_pred             HcEEeeEecCCcCceEEEEEeccCceEEEEecccCC-ccHHHHHHHHHHHHHCCCCCceeEEEEEccCCCEEEEEEcCCC
Confidence            355556667664           3468999876432 23467899999999999999998                    


Q ss_pred             ---------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccc
Q 045449          678 ---------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTL  736 (823)
Q Consensus       678 ---------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~  736 (823)
                                           ++.|++.+|.|+|+.+++||||||+||++++++.+|++|||.++........ ......
T Consensus        84 ~~L~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~ni~i~~~~~~kl~d~g~~~~~~~~~~~-~~~~~~  162 (256)
T cd05114          84 GCLLNYLRQRQGKLSKDMLLSMCQDVCEGMEYLERNSFIHRDLAARNCLVSSTGVVKVSDFGMTRYVLDDEYT-SSSGAK  162 (256)
T ss_pred             CcHHHHHHhCccCCCHHHHHHHHHHHHHHHHHHHHCCccccccCcceEEEcCCCeEEECCCCCccccCCCcee-ccCCCC
Confidence                                 2467888999999999999999999999999999999999999865432221 112234


Q ss_pred             cCCCcCcccccCCCccccccceehhhhhhccccC-CCCCcCCC
Q 045449          737 ATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKET-RSMTVGET  778 (823)
Q Consensus       737 gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~-~~~~~~~~  778 (823)
                      ++..|+|||++.+..++.++|||||||+++++.+ |..||...
T Consensus       163 ~~~~y~aPE~~~~~~~~~~~Di~s~G~~l~el~~~g~~p~~~~  205 (256)
T cd05114         163 FPVKWSPPEVFNFSKYSSKSDVWSFGVLMWEVFTEGKMPFEKK  205 (256)
T ss_pred             CchhhCChhhcccCccchhhhhHHHHHHHHHHHcCCCCCCCCC
Confidence            5678999999988889999999999999999999 88888654

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin h

>cd07849 STKc_ERK1_2_like Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases

Probab=99.81  E-value=1.1e-20  Score=206.51  Aligned_cols=151  Identities=28%  Similarity=0.368  Sum_probs=122.2

Q ss_pred             hccCCccceeeccC------------CeEEEEEEehHh-hHHHHHHHHHHHHHHhhcchhhHHH----------------
Q 045449          627 TDRFSENNLIGIGN------------GMEVAVKVFHQQ-YERALKSFEDECEVRKRIRHRNLVK----------------  677 (823)
Q Consensus       627 t~~f~~~~~lg~g~------------~~~vavK~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~----------------  677 (823)
                      +++|...+.+|.|+            |..||||++... ......++.+|++++++++|+||++                
T Consensus         4 ~~~y~i~~~lg~G~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~   83 (336)
T cd07849           4 GPRYQNLSYIGEGAYGMVCSATHKPTGVKVAIKKISPFEHQTFCQRTLREIKILRRFKHENIIGILDIIRPPSFESFNDV   83 (336)
T ss_pred             ccceEEEEEEEecCCeEEEEEEEcCCCCeEEEEEecccccchhHHHHHHHHHHHHhCCCCCcCchhheeecccccccceE
Confidence            46777778888775            567999998642 2334567889999999999999987                


Q ss_pred             ---------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCcc-
Q 045449          678 ---------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQL-  729 (823)
Q Consensus       678 ---------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~-  729 (823)
                                                 ++.|++++|.++|+.+|+||||||+||+++.++.+||+|||+++........ 
T Consensus        84 ~lv~e~~~~~l~~~~~~~~l~~~~~~~i~~ql~~aL~~LH~~~ivH~dlkp~Nill~~~~~~kl~dfg~~~~~~~~~~~~  163 (336)
T cd07849          84 YIVQELMETDLYKLIKTQHLSNDHIQYFLYQILRGLKYIHSANVLHRDLKPSNLLLNTNCDLKICDFGLARIADPEHDHT  163 (336)
T ss_pred             EEEehhcccCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHEEECCCCCEEECcccceeecccccccc
Confidence                                       2457889999999999999999999999999999999999999875432221 


Q ss_pred             ccccccccCCCcCcccccCC-CccccccceehhhhhhccccCCCCCcCC
Q 045449          730 SKQTQTLATIGYMAPEYGTK-GRVSTRGDVCSFGIISGGKETRSMTVGE  777 (823)
Q Consensus       730 ~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~  777 (823)
                      .......||+.|+|||++.+ ..++.++||||+||+++++.+|+.||.+
T Consensus       164 ~~~~~~~~~~~y~aPE~~~~~~~~~~~~DvwslGvil~el~~G~~~f~~  212 (336)
T cd07849         164 GFLTEYVATRWYRAPEIMLNSKGYTKAIDIWSVGCILAEMLSNRPLFPG  212 (336)
T ss_pred             CCcCCcCcCCCccChHHhhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCC
Confidence            11233568999999998654 4689999999999999999999998854

Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase

>cd05045 PTKc_RET Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein

Probab=99.81  E-value=9.8e-21  Score=202.31  Aligned_cols=137  Identities=25%  Similarity=0.330  Sum_probs=112.2

Q ss_pred             eEEEEEEehHhh-HHHHHHHHHHHHHHhhcchhhHHHH------------------------------------------
Q 045449          642 MEVAVKVFHQQY-ERALKSFEDECEVRKRIRHRNLVKI------------------------------------------  678 (823)
Q Consensus       642 ~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~~------------------------------------------  678 (823)
                      ..||+|.+.... ....+++.+|++++++++||||+++                                          
T Consensus        31 ~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~  110 (290)
T cd05045          31 TTVAVKMLKENASSSELRDLLSEFNLLKQVNHPHVIKLYGACSQDGPLLLIVEYAKYGSLRSFLRESRKVGPSYLGSDGN  110 (290)
T ss_pred             eeEEEEecCCCCCHHHHHHHHHHHHHHhhCCCCCEeeEEEEEecCCCcEEEEEecCCCCHHHHHHhcCCccccccccccc
Confidence            568899886443 3345789999999999999999871                                          


Q ss_pred             ----------------------HHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccc
Q 045449          679 ----------------------ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTL  736 (823)
Q Consensus       679 ----------------------~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~  736 (823)
                                            +.|++.+|+|+|+.+++||||||+||++++++.+||+|||+++...............
T Consensus       111 ~~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~ivH~dikp~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~  190 (290)
T cd05045         111 RNSSYLDNPDERALTMGDLISFAWQISRGMQYLAEMKLVHRDLAARNVLVAEGRKMKISDFGLSRDVYEEDSYVKRSKGR  190 (290)
T ss_pred             cccccccCccccccCHHHHHHHHHHHHHHHHHHHHCCeehhhhhhheEEEcCCCcEEeccccccccccCccchhcccCCC
Confidence                                  3477889999999999999999999999999999999999998654333222223344


Q ss_pred             cCCCcCcccccCCCccccccceehhhhhhccccC-CCCCcCCC
Q 045449          737 ATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKET-RSMTVGET  778 (823)
Q Consensus       737 gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~-~~~~~~~~  778 (823)
                      ++..|+|||+..+..++.++|||||||+++++++ |..||.+.
T Consensus       191 ~~~~y~apE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~  233 (290)
T cd05045         191 IPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIVTLGGNPYPGI  233 (290)
T ss_pred             CCccccCHHHHccCCcchHhHHHHHHHHHHHHHhcCCCCCCCC
Confidence            6778999999888889999999999999999998 88888654

Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leadi

>cd07879 STKc_p38delta_MAPK13 Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase

Probab=99.81  E-value=1.2e-20  Score=206.63  Aligned_cols=156  Identities=29%  Similarity=0.379  Sum_probs=125.8

Q ss_pred             cCHHHHHHHh----ccCCccceeeccC------------CeEEEEEEehHhh--HHHHHHHHHHHHHHhhcchhhHHH--
Q 045449          618 FSYHELLRAT----DRFSENNLIGIGN------------GMEVAVKVFHQQY--ERALKSFEDECEVRKRIRHRNLVK--  677 (823)
Q Consensus       618 ~~~~~l~~at----~~f~~~~~lg~g~------------~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~--  677 (823)
                      |+.+|+.+++    ++|...+.||.|+            +..||||++....  ....+.+.+|++++++++||||++  
T Consensus         1 ~~~~~~~~~~~~~~~~y~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~   80 (342)
T cd07879           1 FYREEVNKTVWELPERYTSLKQVGSGAYGSVCSAIDKRTGEKVAIKKLSRPFQSEIFAKRAYRELTLLKHMQHENVIGLL   80 (342)
T ss_pred             CchhhhhhhhhccccceEEEEEeeecCCeEEEEEEeCCCCcEEEEEEecCccccccchhHHHHHHHHHHhcCCCCccchh
Confidence            3455565554    6787778888774            5679999886432  233457889999999999999986  


Q ss_pred             -----------------------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEee
Q 045449          678 -----------------------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISD  716 (823)
Q Consensus       678 -----------------------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~D  716 (823)
                                                               ++.|++.+|.|+|+.+++||||||+||+++.++.+||+|
T Consensus        81 ~~~~~~~~~~~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~~i~H~dlkp~NIll~~~~~~kL~d  160 (342)
T cd07879          81 DVFTSAVSGDEFQDFYLVMPYMQTDLQKIMGHPLSEDKVQYLVYQMLCGLKYIHSAGIIHRDLKPGNLAVNEDCELKILD  160 (342)
T ss_pred             heecccccCCCCceEEEEecccccCHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCCEEEee
Confidence                                                     245788899999999999999999999999999999999


Q ss_pred             cccccccCCCCccccccccccCCCcCcccccCC-CccccccceehhhhhhccccCCCCCcCCC
Q 045449          717 FGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTK-GRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       717 fGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      ||+++.....     .....++..|+|||++.+ ..++.++|||||||+++++++|+.||...
T Consensus       161 fg~~~~~~~~-----~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slGvil~el~~g~~pf~~~  218 (342)
T cd07879         161 FGLARHADAE-----MTGYVVTRWYRAPEVILNWMHYNQTVDIWSVGCIMAEMLTGKTLFKGK  218 (342)
T ss_pred             CCCCcCCCCC-----CCCceeeecccChhhhcCccccCchHHHHHHHHHHHHHHhCCCCCCCC
Confidence            9999864321     223467899999998866 45899999999999999999999998653

Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13

>cd08223 STKc_Nek4 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4

Probab=99.81  E-value=1.7e-20  Score=196.53  Aligned_cols=136  Identities=24%  Similarity=0.354  Sum_probs=114.8

Q ss_pred             CeEEEEEEehHhh--HHHHHHHHHHHHHHhhcchhhHHH-----------------------------------------
Q 045449          641 GMEVAVKVFHQQY--ERALKSFEDECEVRKRIRHRNLVK-----------------------------------------  677 (823)
Q Consensus       641 ~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~-----------------------------------------  677 (823)
                      ++.||+|.+....  ....+.+.+|++++++++|+|+++                                         
T Consensus        25 ~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~lv~e~~~~~~l~~~l~~~~~~~l~~~~~  104 (257)
T cd08223          25 GKQYVIKKLNLRNASRRERKAAEQEAQLLSQLKHPNIVAYRESWEGEDGLLYIVMGFCEGGDLYHKLKEQKGKLLPENQV  104 (257)
T ss_pred             CcEEEEEEEehhhcCHHHHHHHHHHHHHHHhCCCCCeeeeeeeecCCCCEEEEEecccCCCcHHHHHHHhcCCCCCHHHH
Confidence            5679999986432  344567899999999999999997                                         


Q ss_pred             --HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccCCCccccc
Q 045449          678 --IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTR  755 (823)
Q Consensus       678 --~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~  755 (823)
                        ++.+++.+++++|+.+++||||||+||+++.++.++|+|||+++.......  ......|++.|+|||+..+..++.+
T Consensus       105 ~~~~~~l~~~l~~lH~~~i~H~di~p~nil~~~~~~~~l~df~~~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~  182 (257)
T cd08223         105 VEWFVQIAMALQYLHEKHILHRDLKTQNVFLTRTNIIKVGDLGIARVLENQCD--MASTLIGTPYYMSPELFSNKPYNYK  182 (257)
T ss_pred             HHHHHHHHHHHHHHHhCCeeccCCCchhEEEecCCcEEEecccceEEecccCC--ccccccCCcCccChhHhcCCCCCch
Confidence              245788889999999999999999999999999999999999987643221  2234568999999999998889999


Q ss_pred             cceehhhhhhccccCCCCCcCCC
Q 045449          756 GDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       756 ~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      +||||+||+++++++|..||...
T Consensus       183 ~Dv~slG~il~~l~~g~~~~~~~  205 (257)
T cd08223         183 SDVWALGCCVYEMATLKHAFNAK  205 (257)
T ss_pred             hhhHHHHHHHHHHHcCCCCCCCC
Confidence            99999999999999999988653

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown.

>cd05082 PTKc_Csk Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase

Probab=99.81  E-value=1.1e-20  Score=198.11  Aligned_cols=143  Identities=31%  Similarity=0.413  Sum_probs=116.4

Q ss_pred             cCCccceeeccC----------CeEEEEEEehHhhHHHHHHHHHHHHHHhhcchhhHHH---------------------
Q 045449          629 RFSENNLIGIGN----------GMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVK---------------------  677 (823)
Q Consensus       629 ~f~~~~~lg~g~----------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~---------------------  677 (823)
                      +|...+.+|+|+          +..||+|......  ..+.|.+|+.++++++|+|+++                     
T Consensus         7 ~~~~~~~lg~g~~~~v~~~~~~~~~~~~k~~~~~~--~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~lv~e~~~~   84 (256)
T cd05082           7 ELKLLQTIGKGEFGDVMLGDYRGNKVAVKCIKNDA--TAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAK   84 (256)
T ss_pred             hCeeeeeecccCCCeEEEEEEcCCcEEEEEeCCCc--hHHHHHHHHHHHHhCCCCCeeeEEEEEEcCCCceEEEEECCCC
Confidence            444555666654          4668999886443  3467999999999999999998                     


Q ss_pred             ----------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCcccccccc
Q 045449          678 ----------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQT  735 (823)
Q Consensus       678 ----------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~  735 (823)
                                            ++.|++.+|+|+|+.+++||||||+||++++++.+|++|||+++......     ...
T Consensus        85 ~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~nil~~~~~~~kl~dfg~~~~~~~~~-----~~~  159 (256)
T cd05082          85 GSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEANNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQ-----DTG  159 (256)
T ss_pred             CcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCEeccccchheEEEcCCCcEEecCCccceeccccC-----CCC
Confidence                                  24678889999999999999999999999999999999999988653221     123


Q ss_pred             ccCCCcCcccccCCCccccccceehhhhhhccccC-CCCCcCCC
Q 045449          736 LATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKET-RSMTVGET  778 (823)
Q Consensus       736 ~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~-~~~~~~~~  778 (823)
                      .++..|+|||+..+..++.++|||||||++|++.+ |..|+...
T Consensus       160 ~~~~~y~aPE~~~~~~~~~~~Dv~slG~i~~~l~~~g~~p~~~~  203 (256)
T cd05082         160 KLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRI  203 (256)
T ss_pred             ccceeecCHHHHccCCCCchhhhHHHHHHHHHHHhCCCCCCCCC
Confidence            45678999999988889999999999999999996 88887653

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, re

>cd06656 STKc_PAK3 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3

Probab=99.81  E-value=1e-20  Score=202.91  Aligned_cols=149  Identities=28%  Similarity=0.387  Sum_probs=123.7

Q ss_pred             ccCCccceeeccC------------CeEEEEEEehHhhHHHHHHHHHHHHHHhhcchhhHHH------------------
Q 045449          628 DRFSENNLIGIGN------------GMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVK------------------  677 (823)
Q Consensus       628 ~~f~~~~~lg~g~------------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~------------------  677 (823)
                      ++|...+.+|.|+            +..||+|.+........+.+.+|+.++++++|+||++                  
T Consensus        19 ~~y~~~~~lg~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv~e~~   98 (297)
T cd06656          19 KKYTRFEKIGQGASGTVYTAIDIATGQEVAIKQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEYL   98 (297)
T ss_pred             hhceeeeeeccCCCeEEEEEEECCCCCEEEEEEEecCccchHHHHHHHHHHHHhCCCCCEeeEEEEEecCCEEEEeeccc
Confidence            4566666777664            5779999987655455577899999999999999998                  


Q ss_pred             ---------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccc
Q 045449          678 ---------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTL  736 (823)
Q Consensus       678 ---------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~  736 (823)
                                           ++.|++.+|.|+|+.+++||||||+||+++.++.+||+|||++........  ......
T Consensus        99 ~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~LH~~~i~H~dL~p~Nili~~~~~~~l~Dfg~~~~~~~~~~--~~~~~~  176 (297)
T cd06656          99 AGGSLTDVVTETCMDEGQIAAVCRECLQALDFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQS--KRSTMV  176 (297)
T ss_pred             CCCCHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCCEEECcCccceEccCCcc--CcCccc
Confidence                                 245788899999999999999999999999999999999999986543322  123356


Q ss_pred             cCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCC
Q 045449          737 ATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       737 gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      +++.|+|||...+..++.++|||||||++|++.+|..||...
T Consensus       177 ~~~~y~aPE~~~~~~~~~~~Di~slGvil~~l~tg~~pf~~~  218 (297)
T cd06656         177 GTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMVEGEPPYLNE  218 (297)
T ss_pred             CCccccCHHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence            889999999998888999999999999999999999998653

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>KOG0608 consensus Warts/lats-like serine threonine kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=99.81  E-value=5.1e-21  Score=204.92  Aligned_cols=160  Identities=23%  Similarity=0.280  Sum_probs=123.7

Q ss_pred             cCHHHHHHHh---ccCCccceeeccC-CeE-----------EEEEEehHhh---HHHHHHHHHHHHHHhhcchhhHHH--
Q 045449          618 FSYHELLRAT---DRFSENNLIGIGN-GME-----------VAVKVFHQQY---ERALKSFEDECEVRKRIRHRNLVK--  677 (823)
Q Consensus       618 ~~~~~l~~at---~~f~~~~~lg~g~-~~~-----------vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~--  677 (823)
                      -.|-.+.+|.   .-|...+-||.|+ |++           +|+|.+++..   +..+...+.|-+||.....+.||+  
T Consensus       616 SnYiRLkRaKMdKSmFvkik~iGvGAFGeV~Lv~KvDT~~lYAmKTLrKaDVl~rnQvaHVKAERDILAEADn~WVVrLy  695 (1034)
T KOG0608|consen  616 SNYIRLKRAKMDKSMFVKIKTIGVGAFGEVCLVRKVDTRALYAMKTLRKADVLMRNQVAHVKAERDILAEADNEWVVRLY  695 (1034)
T ss_pred             hhHHHHHHhhccccceEEEeeecccccceeEEEeecchhhHHHHhhhHHHHHHhhhhhhhhhhhhhhHhhcCCcceEEEE
Confidence            3455555554   3466677889887 333           5556555443   233456778999999999999998  


Q ss_pred             --------------------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeeccc
Q 045449          678 --------------------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGI  719 (823)
Q Consensus       678 --------------------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGl  719 (823)
                                                            +||++..++++.|..|.|||||||+|||+|.+|++||+|||+
T Consensus       696 ySFQDkdnLYFVMdYIPGGDmMSLLIrmgIFeE~LARFYIAEltcAiesVHkmGFIHRDiKPDNILIDrdGHIKLTDFGL  775 (1034)
T KOG0608|consen  696 YSFQDKDNLYFVMDYIPGGDMMSLLIRMGIFEEDLARFYIAELTCAIESVHKMGFIHRDIKPDNILIDRDGHIKLTDFGL  775 (1034)
T ss_pred             EEeccCCceEEEEeccCCccHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhccceecccCccceEEccCCceeeeeccc
Confidence                                                  468888899999999999999999999999999999999999


Q ss_pred             ccccCCCCc----------------------------------------cccccccccCCCcCcccccCCCcccccccee
Q 045449          720 AKLLSGEDQ----------------------------------------LSKQTQTLATIGYMAPEYGTKGRVSTRGDVC  759 (823)
Q Consensus       720 a~~~~~~~~----------------------------------------~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~  759 (823)
                      +.-+.-...                                        .......+||+.|+|||++....|+.-||+|
T Consensus       776 CTGfRWTHdskYYq~gdH~RqDSmep~~e~~d~~~~lkvL~~ra~~~h~r~~ahslvgt~nyiapevl~r~g~~q~cdww  855 (1034)
T KOG0608|consen  776 CTGFRWTHDSKYYQEGDHHRQDSMEPSPEWADISKCLKVLERRAMRQHQRILAHSLVGTPNYIAPEVLARTGYTQLCDWW  855 (1034)
T ss_pred             cccceeccccccccCCCccccccCCCchhhccccccchHHHHHHHhhhhhhhhhhhcCCCcccChHHhcccCccccchhh
Confidence            864311000                                        0011235799999999999999999999999


Q ss_pred             hhhhhhccccCCCCCcCC
Q 045449          760 SFGIISGGKETRSMTVGE  777 (823)
Q Consensus       760 S~Gvv~~~~~~~~~~~~~  777 (823)
                      |.|||+|||++|+.||-.
T Consensus       856 s~gvil~em~~g~~pf~~  873 (1034)
T KOG0608|consen  856 SVGVILYEMLVGQPPFLA  873 (1034)
T ss_pred             HhhHHHHHHhhCCCCccC
Confidence            999999999999999854

>cd05115 PTKc_Zap-70 Catalytic domain of the Protein Tyrosine Kinase, Zeta-chain-associated protein of 70kDa

Probab=99.81  E-value=1.3e-20  Score=197.49  Aligned_cols=138  Identities=24%  Similarity=0.347  Sum_probs=113.1

Q ss_pred             CeEEEEEEehHhh-HHHHHHHHHHHHHHhhcchhhHHH----------------------------------------HH
Q 045449          641 GMEVAVKVFHQQY-ERALKSFEDECEVRKRIRHRNLVK----------------------------------------II  679 (823)
Q Consensus       641 ~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~----------------------------------------~~  679 (823)
                      +..||||++.... ....+.|.+|++++++++|+||++                                        ++
T Consensus        22 ~~~vavk~~~~~~~~~~~~~~~~E~~~l~~l~h~~ii~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~  101 (257)
T cd05115          22 QIDVAIKVLKNENEKSVRDEMMREAEIMHQLDNPYIVRMIGVCEAEALMLVMEMASGGPLNKFLSGKKDEITVSNVVELM  101 (257)
T ss_pred             ceeEEEEEcccccChHHHHHHHHHHHHHHhcCCCCeEEEEEEEcCCCeEEEEEeCCCCCHHHHHHhCCCCCCHHHHHHHH
Confidence            4679999997554 344567999999999999999997                                        35


Q ss_pred             HHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccc-cccccccCCCcCcccccCCCccccccce
Q 045449          680 SSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLS-KQTQTLATIGYMAPEYGTKGRVSTRGDV  758 (823)
Q Consensus       680 ~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~Dv  758 (823)
                      .|++.+|.|+|+.+++||||||+||+++.++.+||+|||+++......... ......++..|+|||+.....++.++||
T Consensus       102 ~~i~~~l~~lH~~~i~H~dlkp~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di  181 (257)
T cd05115         102 HQVSMGMKYLEGKNFVHRDLAARNVLLVNQHYAKISDFGLSKALGADDSYYKARSAGKWPLKWYAPECINFRKFSSRSDV  181 (257)
T ss_pred             HHHHHHHHHHHhcCeeecccchheEEEcCCCcEEeccCCccccccCCccceeccCCCCCCcccCCHHHHccCCCCchhhH
Confidence            688889999999999999999999999999999999999998654332211 1122234678999999988889999999


Q ss_pred             ehhhhhhccccC-CCCCcCCC
Q 045449          759 CSFGIISGGKET-RSMTVGET  778 (823)
Q Consensus       759 ~S~Gvv~~~~~~-~~~~~~~~  778 (823)
                      |||||++|++++ |..||.+.
T Consensus       182 ~slG~~l~el~~~g~~p~~~~  202 (257)
T cd05115         182 WSYGITMWEAFSYGQKPYKKM  202 (257)
T ss_pred             HHHHHHHHHHhcCCCCCcCcC
Confidence            999999999885 88888764

Protein Tyrosine Kinase (PTK) family; Zeta-chain-associated protein of 70kDa (Zap-70); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Zap-70 is a member of the Syk subfamily of kinases, which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Zap-70 binds the phosphorylated ITAM (immunoreceptor tyr activation motif) sequences of the activated TCR zeta-chain through its SH2 domains, leading to its pho

>KOG1027 consensus Serine/threonine protein kinase and endoribonuclease ERN1/IRE1, sensor of the unfolded protein response pathway [Signal transduction mechanisms]

Probab=99.81  E-value=3.9e-21  Score=213.35  Aligned_cols=149  Identities=32%  Similarity=0.475  Sum_probs=120.6

Q ss_pred             CCccceeeccC-----------CeEEEEEEehHhhHHHHHHHHHHHHHHhhc-chhhHHH--------------------
Q 045449          630 FSENNLIGIGN-----------GMEVAVKVFHQQYERALKSFEDECEVRKRI-RHRNLVK--------------------  677 (823)
Q Consensus       630 f~~~~~lg~g~-----------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~--------------------  677 (823)
                      |...+++|.|.           |+.||||++-.+..   +-..+||..+..- .|||||+                    
T Consensus       511 ~~~~eilG~Gs~Gt~Vf~G~ye~R~VAVKrll~e~~---~~A~rEi~lL~eSD~H~NviRyyc~E~d~qF~YIalELC~~  587 (903)
T KOG1027|consen  511 FSPKEILGYGSNGTVVFRGVYEGREVAVKRLLEEFF---DFAQREIQLLQESDEHPNVIRYYCSEQDRQFLYIALELCAC  587 (903)
T ss_pred             eccHHHcccCCCCcEEEEEeeCCceehHHHHhhHhH---HHHHHHHHHHHhccCCCceEEEEeeccCCceEEEEehHhhh
Confidence            44456666664           67899998865543   4567899988877 7999999                    


Q ss_pred             -----------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCC---C--CcEEEeecccccccCCCCc-
Q 045449          678 -----------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDE---D--MVAHISDFGIAKLLSGEDQ-  728 (823)
Q Consensus       678 -----------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~---~--~~~kl~DfGla~~~~~~~~-  728 (823)
                                             .+.|+..+|.|+|+.+|||||+||+|||++.   +  .+++|+|||+++.+..... 
T Consensus       588 sL~dlie~~~~d~~~~~~i~~~~~l~q~~~GlaHLHsl~iVHRDLkPQNILI~~~~~~~~~ra~iSDfglsKkl~~~~sS  667 (903)
T KOG1027|consen  588 SLQDLIESSGLDVEMQSDIDPISVLSQIASGLAHLHSLKIVHRDLKPQNILISVPSADGTLRAKISDFGLSKKLAGGKSS  667 (903)
T ss_pred             hHHHHHhccccchhhcccccHHHHHHHHHHHHHHHHhcccccccCCCceEEEEccCCCcceeEEecccccccccCCCcch
Confidence                                   2468889999999999999999999999975   2  5899999999998876543 


Q ss_pred             cccccccccCCCcCcccccCCCccccccceehhhhhhccccCC-CCCcCCCccc
Q 045449          729 LSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETR-SMTVGETCTP  781 (823)
Q Consensus       729 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~-~~~~~~~~~~  781 (823)
                      ........||-+|+|||.+....-+..+|++|+|||+|+.++| ..||++....
T Consensus       668 ~~r~s~~sGt~GW~APE~L~~~~~~~avDiFslGCvfyYvltgG~HpFGd~~~R  721 (903)
T KOG1027|consen  668 FSRLSGGSGTSGWQAPEQLREDRKTQAVDIFSLGCVFYYVLTGGSHPFGDSLER  721 (903)
T ss_pred             hhcccCCCCcccccCHHHHhccccCcccchhhcCceEEEEecCCccCCCchHHh
Confidence            2334567899999999999988888899999999998888876 7899876433

>KOG1025 consensus Epidermal growth factor receptor EGFR and related tyrosine kinases [Signal transduction mechanisms]

Probab=99.81  E-value=1.3e-20  Score=207.68  Aligned_cols=147  Identities=24%  Similarity=0.309  Sum_probs=121.6

Q ss_pred             cceeeccC----------------CeEEEEEEehHhh-HHHHHHHHHHHHHHhhcchhhHHHH-----------------
Q 045449          633 NNLIGIGN----------------GMEVAVKVFHQQY-ERALKSFEDECEVRKRIRHRNLVKI-----------------  678 (823)
Q Consensus       633 ~~~lg~g~----------------~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~~-----------------  678 (823)
                      .++||.|+                +-+||+|++.... .+...+|.+|+-+|.+++|||++++                 
T Consensus       701 ~kvLGsgAfGtV~kGiw~Pege~vKipVaiKvl~~~t~~~~s~e~LdeAl~masldHpnl~RLLgvc~~s~~qlvtq~mP  780 (1177)
T KOG1025|consen  701 DKVLGSGAFGTVYKGIWIPEGENVKIPVAIKVLIEFTSPKASIELLDEALRMASLDHPNLLRLLGVCMLSTLQLVTQLMP  780 (1177)
T ss_pred             hceeccccceeEEeeeEecCCceecceeEEEEeeccCCchhhHHHHHHHHHHhcCCCchHHHHhhhcccchHHHHHHhcc
Confidence            46788775                2359999986543 4556899999999999999999993                 


Q ss_pred             -----------------------HHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCcccccccc
Q 045449          679 -----------------------ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQT  735 (823)
Q Consensus       679 -----------------------~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~  735 (823)
                                             ..|++.+|.|+|++++|||||-..|||+..-.++|++|||+|+....++........
T Consensus       781 ~G~LlDyvr~hr~~igsq~lLnw~~QIAkgM~YLe~qrlVHrdLaaRNVLVksP~hvkitdfgla~ll~~d~~ey~~~~g  860 (1177)
T KOG1025|consen  781 LGCLLDYVREHRDNIGSQDLLNWCYQIAKGMKYLEEQRLVHRDLAARNVLVKSPNHVKITDFGLAKLLAPDEKEYSAPGG  860 (1177)
T ss_pred             cchHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcchhhhhhhhhheeecCCCeEEEEecchhhccCccccccccccc
Confidence                                   247777888889999999999999999999999999999999998766554333334


Q ss_pred             ccCCCcCcccccCCCccccccceehhhhhhccccC-CCCCcCCCc
Q 045449          736 LATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKET-RSMTVGETC  779 (823)
Q Consensus       736 ~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~-~~~~~~~~~  779 (823)
                      .-.+.|||-|.+....|+.++|||||||..||++| |..|+++..
T Consensus       861 K~pikwmale~i~~~~~thqSDVWsfGVtiWElmTFGa~Py~gi~  905 (1177)
T KOG1025|consen  861 KVPIKWMALESIRIRKYTHQSDVWSFGVTIWELMTFGAKPYDGIP  905 (1177)
T ss_pred             ccCcHHHHHHHhhccCCCchhhhhhhhhhHHHHHhcCCCccCCCC
Confidence            44678999999999999999999999999999865 778887754

>cd05081 PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=99.81  E-value=1.8e-20  Score=199.50  Aligned_cols=136  Identities=31%  Similarity=0.402  Sum_probs=112.2

Q ss_pred             CeEEEEEEehHhhHHHHHHHHHHHHHHhhcchhhHHH-------------------------------------------
Q 045449          641 GMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVK-------------------------------------------  677 (823)
Q Consensus       641 ~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~-------------------------------------------  677 (823)
                      +..||||++........+.|.+|++++++++||||++                                           
T Consensus        33 ~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~l~~~~~~~  112 (284)
T cd05081          33 GEVVAVKKLQHSTAEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLRLVMEYLPYGSLRDYLQKHRERLDHRKLLL  112 (284)
T ss_pred             CcEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCeeEEEEEEccCCCCceEEEEEecCCCCHHHHHHhcCcCCCHHHHHH
Confidence            5679999997666666688999999999999999997                                           


Q ss_pred             HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCcccc-ccccccCCCcCcccccCCCcccccc
Q 045449          678 IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSK-QTQTLATIGYMAPEYGTKGRVSTRG  756 (823)
Q Consensus       678 ~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~-~~~~~gt~~y~aPE~~~~~~~~~~~  756 (823)
                      ++.|++.+|+|+|+.+|+||||||+||+++.++.+||+|||+++.......... .....++..|+|||+..+..++.++
T Consensus       113 ~~~~l~~aL~~LH~~~i~H~dlkp~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~  192 (284)
T cd05081         113 YASQICKGMEYLGSKRYVHRDLATRNILVESENRVKIGDFGLTKVLPQDKEYYKVREPGESPIFWYAPESLTESKFSVAS  192 (284)
T ss_pred             HHHHHHHHHHHHHHCCceeccCCHhhEEECCCCeEEECCCcccccccCCCcceeecCCCCCceEeeCHHHhccCCcChHH
Confidence            246788899999999999999999999999999999999999987654322111 1112344569999999888899999


Q ss_pred             ceehhhhhhccccCCCCCcC
Q 045449          757 DVCSFGIISGGKETRSMTVG  776 (823)
Q Consensus       757 Dv~S~Gvv~~~~~~~~~~~~  776 (823)
                      |||||||+++++.++..++.
T Consensus       193 Di~slG~~l~el~~~~~~~~  212 (284)
T cd05081         193 DVWSFGVVLYELFTYSDKSC  212 (284)
T ss_pred             HHHHHHHHHHHHhhcCCcCC
Confidence            99999999999998766543

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as th

>cd05074 PTKc_Tyro3 Catalytic domain of the Protein Tyrosine Kinase, Tyro3

Probab=99.81  E-value=1.8e-20  Score=198.30  Aligned_cols=139  Identities=23%  Similarity=0.322  Sum_probs=113.3

Q ss_pred             CCeEEEEEEehHhh--HHHHHHHHHHHHHHhhcchhhHHH----------------------------------------
Q 045449          640 NGMEVAVKVFHQQY--ERALKSFEDECEVRKRIRHRNLVK----------------------------------------  677 (823)
Q Consensus       640 ~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~----------------------------------------  677 (823)
                      .+..||||++....  ....+++.+|++++++++||||++                                        
T Consensus        26 ~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  105 (273)
T cd05074          26 SFQKVAVKMLKADIFSSSDIEEFLREAACMKEFDHPNVIKLIGVSLRSRAKGRLPIPMVILPFMKHGDLHTFLLMSRIGE  105 (273)
T ss_pred             CceEEEEEEeccccCChHHHHHHHHHHHHHhcCCCCCcceEEEEEccCCCCCcccceEEEEecCCCCcHHHHHHHhcccC
Confidence            35789999986542  344578999999999999999876                                        


Q ss_pred             ------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCccc
Q 045449          678 ------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPE  745 (823)
Q Consensus       678 ------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE  745 (823)
                                  ++.|++.+|.|+|+.+|+||||||+||+++.++.+|++|||+++...............+++.|++||
T Consensus       106 ~~~~l~~~~~~~~~~~i~~~l~~lH~~~i~H~dikp~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~pe  185 (273)
T cd05074         106 EPFTLPLQTLVRFMIDIASGMEYLSSKNFIHRDLAARNCMLNENMTVCVADFGLSKKIYSGDYYRQGCASKLPVKWLALE  185 (273)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHhCCEeecccchhhEEEcCCCCEEECcccccccccCCcceecCCCccCchhhcCHh
Confidence                        24577788999999999999999999999999999999999998764333222223344667899999


Q ss_pred             ccCCCccccccceehhhhhhccccC-CCCCcCCC
Q 045449          746 YGTKGRVSTRGDVCSFGIISGGKET-RSMTVGET  778 (823)
Q Consensus       746 ~~~~~~~~~~~Dv~S~Gvv~~~~~~-~~~~~~~~  778 (823)
                      ......++.++|||||||+++++.+ |..||.+.
T Consensus       186 ~~~~~~~~~~sDi~slG~il~el~~~g~~p~~~~  219 (273)
T cd05074         186 SLADNVYTTHSDVWAFGVTMWEIMTRGQTPYAGV  219 (273)
T ss_pred             HHhcCccchhhhhHHHHHHHHHHhhCCCCCCCCC
Confidence            9988889999999999999999998 77777654

Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic fac

>cd05574 STKc_phototropin_like Catalytic domain of Phototropin-like Protein Serine/Threonine Kinases

Probab=99.81  E-value=1.5e-20  Score=203.53  Aligned_cols=150  Identities=25%  Similarity=0.303  Sum_probs=120.9

Q ss_pred             cCCccceeeccC------------CeEEEEEEehHhh---HHHHHHHHHHHHHHhhcchhhHHH----------------
Q 045449          629 RFSENNLIGIGN------------GMEVAVKVFHQQY---ERALKSFEDECEVRKRIRHRNLVK----------------  677 (823)
Q Consensus       629 ~f~~~~~lg~g~------------~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~----------------  677 (823)
                      +|...+.+|.|+            +..||+|.+....   ....+.+..|++++++++|+||++                
T Consensus         2 ~y~~~~~ig~g~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e   81 (316)
T cd05574           2 HFKKIKLLGKGDVGRVFLVRLKGTGKLFALKVLDKKEMIKRNKVKRVLTEQEILATLDHPFLPTLYASFQTETYLCLVMD   81 (316)
T ss_pred             ceEEeeeecCCccEEEEEEEEcCCCcEEEEEEEeccccchHHHHHHHHHHHHHHHhCCCCCchhheeeeecCCEEEEEEE
Confidence            455556666653            5779999986543   235567999999999999999998                


Q ss_pred             --------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCcc--
Q 045449          678 --------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQL--  729 (823)
Q Consensus       678 --------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~--  729 (823)
                                                ++.|++++|.|+|+.+++||||||+||+++.++.++|+|||++.........  
T Consensus        82 ~~~~~~L~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~~~~~~~  161 (316)
T cd05574          82 YCPGGELFRLLQRQPGKCLSEEVARFYAAEVLLALEYLHLLGIVYRDLKPENILLHESGHIMLSDFDLSKQSDVEPPPVS  161 (316)
T ss_pred             ecCCCCHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHHHHCCeeccCCChHHeEEcCCCCEEEeecchhhcccccccccc
Confidence                                      2468888999999999999999999999999999999999998764322110  


Q ss_pred             -------------------------ccccccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCC
Q 045449          730 -------------------------SKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       730 -------------------------~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                                               .......||..|+|||+..+..++.++|||||||++|++++|..||...
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~slG~ll~~l~~g~~pf~~~  235 (316)
T cd05574         162 KALRKGSRRSSVNSIPSETFSEEPSFRSNSFVGTEEYIAPEVISGDGHGSAVDWWTLGILLYEMLYGTTPFKGS  235 (316)
T ss_pred             cccccccccccccccchhhhcccccCCCCCCcCccCCcCHHHHcCCCCCchHHHHHHHHHHHHHhhCCCCCCCC
Confidence                                     0011346899999999998888999999999999999999999998654

Serine/Threonine Kinases (STKs), Phototropin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The phototropin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Included in this subfamily are plant phototropins and predominantly uncharacterized fungal STKs whose catalytic domains resemble the phototropin kinase domain. One protein from Neurospora crassa is called nrc-2. Phototropins are blue-light receptors that control responses such as phototropism, stromatal opening, and chloroplast movement in order to optimize the photosynthetic efficiency of plants. They are light-activated STKs that contain an N-termin

>PTZ00266 NIMA-related protein kinase; Provisional

Probab=99.81  E-value=8e-21  Score=223.52  Aligned_cols=152  Identities=24%  Similarity=0.343  Sum_probs=120.7

Q ss_pred             HHHhccCCccceeeccC------------CeEEEEEEehHh--hHHHHHHHHHHHHHHhhcchhhHHH------------
Q 045449          624 LRATDRFSENNLIGIGN------------GMEVAVKVFHQQ--YERALKSFEDECEVRKRIRHRNLVK------------  677 (823)
Q Consensus       624 ~~at~~f~~~~~lg~g~------------~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~------------  677 (823)
                      ....++|...+.||.|+            +..||+|++...  .......|..|+.++.+++|||||+            
T Consensus         9 e~~l~~YeIl~kLG~GgFGtVYLAkdk~tg~~vAlKvIk~~~l~e~~~~~~~~EI~IL~~L~HPNIVrl~d~f~de~~~~   88 (1021)
T PTZ00266          9 ESRLNEYEVIKKIGNGRFGEVFLVKHKRTQEFFCWKAISYRGLKEREKSQLVIEVNVMRELKHKNIVRYIDRFLNKANQK   88 (1021)
T ss_pred             ccccCCEEEEEEEecCCCeEEEEEEECCCCeEEEEEEEeccccCHHHHHHHHHHHHHHHHcCCCCcCeEEEEEEecCCCE
Confidence            34456788888899885            456889988643  2344578999999999999999998            


Q ss_pred             ----------------------------------HHHHHHHHhhhcCCC-------CEEeccCCCCCEEeCC--------
Q 045449          678 ----------------------------------IISSSLEYLHFGHSI-------PIIHCDLKPSNVLLDE--------  708 (823)
Q Consensus       678 ----------------------------------~~~~~l~~L~~~h~~-------~ivHrdlk~~NiLl~~--------  708 (823)
                                                        ++.|++.+|.|+|..       +||||||||+|||++.        
T Consensus        89 lyIVMEY~~gGSL~~lL~k~~~~~g~L~E~~Il~Ia~QIL~ALaYLHs~g~~~~~k~IVHRDLKPeNILL~s~~~~lg~i  168 (1021)
T PTZ00266         89 LYILMEFCDAGDLSRNIQKCYKMFGKIEEHAIVDITRQLLHALAYCHNLKDGPNGERVLHRDLKPQNIFLSTGIRHIGKI  168 (1021)
T ss_pred             EEEEEeCCCCCcHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhcccccccCCceeccCcHHHeEeecCccccccc
Confidence                                              246788888888874       5999999999999964        


Q ss_pred             ---------CCcEEEeecccccccCCCCccccccccccCCCcCcccccCC--CccccccceehhhhhhccccCCCCCcCC
Q 045449          709 ---------DMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTK--GRVSTRGDVCSFGIISGGKETRSMTVGE  777 (823)
Q Consensus       709 ---------~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~--~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~  777 (823)
                               ...+||+|||+++.+....   ......||+.|+|||++.+  ..++.++|||||||++|++++|..||..
T Consensus       169 ~~~~~n~ng~~iVKLsDFGlAr~l~~~s---~~~s~vGTp~YmAPEvL~ge~~~~s~KSDVWSLG~ILYELLTGk~PF~~  245 (1021)
T PTZ00266        169 TAQANNLNGRPIAKIGDFGLSKNIGIES---MAHSCVGTPYYWSPELLLHETKSYDDKSDMWALGCIIYELCSGKTPFHK  245 (1021)
T ss_pred             cccccccCCCCceEEccCCccccccccc---cccccCCCccccCHHHHhccCCCCCchhHHHHHHHHHHHHHHCCCCCCc
Confidence                     3458999999998754322   1234579999999998854  4589999999999999999999999965


Q ss_pred             C
Q 045449          778 T  778 (823)
Q Consensus       778 ~  778 (823)
                      .
T Consensus       246 ~  246 (1021)
T PTZ00266        246 A  246 (1021)
T ss_pred             C
Confidence            3

>cd07850 STKc_JNK Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase

Probab=99.81  E-value=2.1e-20  Score=205.70  Aligned_cols=149  Identities=28%  Similarity=0.324  Sum_probs=123.7

Q ss_pred             HhccCCccceeeccC------------CeEEEEEEehHh--hHHHHHHHHHHHHHHhhcchhhHHH--------------
Q 045449          626 ATDRFSENNLIGIGN------------GMEVAVKVFHQQ--YERALKSFEDECEVRKRIRHRNLVK--------------  677 (823)
Q Consensus       626 at~~f~~~~~lg~g~------------~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~--------------  677 (823)
                      ..++|...+.+|.|+            +..||||++...  .....+.+.+|++++++++|+||++              
T Consensus        14 ~~~~y~~~~~lg~g~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~   93 (353)
T cd07850          14 VLKRYQNLKPIGSGAQGIVCAAYDTVTGQNVAIKKLSRPFQNVTHAKRAYRELVLMKLVNHKNIIGLLNVFTPQKSLEEF   93 (353)
T ss_pred             hhcceEEEEEeccCCCEEEEEEEECCCCCEEEEEecCccccChhHHHHHHHHHHHHHhcCCCCCcceeeeeccCCCcccc
Confidence            446777778888775            567999998643  2334467888999999999999985              


Q ss_pred             -----------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCc
Q 045449          678 -----------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQ  728 (823)
Q Consensus       678 -----------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~  728 (823)
                                                   ++.|++.+|+|+|+.+|+||||||+||+++.++.+||+|||+++...... 
T Consensus        94 ~~~~lv~e~~~~~l~~~~~~~l~~~~~~~~~~ql~~aL~~LH~~gi~H~dlkp~Nil~~~~~~~kL~Dfg~~~~~~~~~-  172 (353)
T cd07850          94 QDVYLVMELMDANLCQVIQMDLDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSF-  172 (353)
T ss_pred             CcEEEEEeccCCCHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhCCeeeCCCCHHHEEECCCCCEEEccCccceeCCCCC-
Confidence                                         25678899999999999999999999999999999999999998754322 


Q ss_pred             cccccccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCC
Q 045449          729 LSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGE  777 (823)
Q Consensus       729 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~  777 (823)
                        ......+++.|+|||++.+..++.++||||+||+++++++|+.||..
T Consensus       173 --~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~~l~~g~~pf~~  219 (353)
T cd07850         173 --MMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIRGTVLFPG  219 (353)
T ss_pred             --CCCCCcccccccCHHHHhCCCCCCchhhHhHHHHHHHHHHCCCCCCC
Confidence              12334688999999999998999999999999999999999998864

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK

>cd06639 STKc_myosinIIIB Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin

Probab=99.81  E-value=9.4e-21  Score=202.54  Aligned_cols=158  Identities=27%  Similarity=0.337  Sum_probs=127.8

Q ss_pred             cCHHHHHHHhccCCccceeeccC------------CeEEEEEEehHhhHHHHHHHHHHHHHHhhc-chhhHHH-------
Q 045449          618 FSYHELLRATDRFSENNLIGIGN------------GMEVAVKVFHQQYERALKSFEDECEVRKRI-RHRNLVK-------  677 (823)
Q Consensus       618 ~~~~~l~~at~~f~~~~~lg~g~------------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~-------  677 (823)
                      +++.++.+++++|...+.+|.|+            +..||+|++.... .....+.+|+.++.++ +|||+++       
T Consensus        12 ~~~~~~~~~~~~y~~~~~l~~g~~~~vy~~~~~~~~~~~aik~~~~~~-~~~~~~~~e~~~l~~l~~h~ni~~~~~~~~~   90 (291)
T cd06639          12 LGLESLGDPTDTWEIIETIGKGTYGKVYKVTNKKDGSLAAVKILDPIS-DVDEEIEAEYNILQSLPNHPNVVKFYGMFYK   90 (291)
T ss_pred             hhcccCCCCCCCeEEEEEeecCCCeEEEEEEECCCCCEEEEEEecccc-cHHHHHHHHHHHHHHhcCCCCeEEEEEEEEe
Confidence            55677777889999988898875            5678999886432 2235678899999998 7998887       


Q ss_pred             ------------------------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEe
Q 045449          678 ------------------------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHIS  715 (823)
Q Consensus       678 ------------------------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~  715 (823)
                                                                ++.|++.+|+++|+.+++||||||+||+++.++.+||+
T Consensus        91 ~~~~~~~~~~lv~ey~~~~sL~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~ivH~dlkp~nili~~~~~~kl~  170 (291)
T cd06639          91 ADKLVGGQLWLVLELCNGGSVTELVKGLLICGQRLDEAMISYILYGALLGLQHLHNNRIIHRDVKGNNILLTTEGGVKLV  170 (291)
T ss_pred             ccccCCCeeEEEEEECCCCcHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHEEEcCCCCEEEe
Confidence                                                      24577889999999999999999999999999999999


Q ss_pred             ecccccccCCCCccccccccccCCCcCcccccCCC-----ccccccceehhhhhhccccCCCCCcCCC
Q 045449          716 DFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKG-----RVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       716 DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-----~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      |||+++.......  ......|+..|+|||++...     .++.++|||||||+++++.+|+.||...
T Consensus       171 dfg~~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slGvi~~el~~g~~p~~~~  236 (291)
T cd06639         171 DFGVSAQLTSTRL--RRNTSVGTPFWMAPEVIACEQQYDYSYDARCDVWSLGITAIELGDGDPPLFDM  236 (291)
T ss_pred             ecccchhcccccc--cccCccCCccccChhhhcCCCCcccccCCccchHHHHHHHHHHhhCCCCCCCC
Confidence            9999987543221  12234688999999987543     3688999999999999999999998764

Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also pre

>KOG0668 consensus Casein kinase II, alpha subunit [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.81  E-value=9.6e-21  Score=179.78  Aligned_cols=131  Identities=22%  Similarity=0.351  Sum_probs=111.4

Q ss_pred             CeEEEEEEehHhhHHHHHHHHHHHHHHhhcc-hhhHHHH---------------------------------------HH
Q 045449          641 GMEVAVKVFHQQYERALKSFEDECEVRKRIR-HRNLVKI---------------------------------------IS  680 (823)
Q Consensus       641 ~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~~---------------------------------------~~  680 (823)
                      +..++||++++...   +...+|+.++..++ ||||+++                                       +.
T Consensus        63 ~eK~ViKiLKPVkk---kKIkREikIL~nL~gg~NIi~L~DiV~Dp~SktpaLiFE~v~n~Dfk~ly~tl~d~dIryY~~  139 (338)
T KOG0668|consen   63 NEKCVIKILKPVKK---KKIKREIKILQNLRGGPNIIKLLDIVKDPESKTPSLIFEYVNNTDFKQLYPTLTDYDIRYYIY  139 (338)
T ss_pred             CceEEEeeechHHH---HHHHHHHHHHHhccCCCCeeehhhhhcCccccCchhHhhhhccccHHHHhhhhchhhHHHHHH
Confidence            46789999987644   57889999999997 9999982                                       46


Q ss_pred             HHHHHhhhcCCCCEEeccCCCCCEEeCCC-CcEEEeecccccccCCCCccccccccccCCCcCcccccCC-Cccccccce
Q 045449          681 SSLEYLHFGHSIPIIHCDLKPSNVLLDED-MVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTK-GRVSTRGDV  758 (823)
Q Consensus       681 ~~l~~L~~~h~~~ivHrdlk~~NiLl~~~-~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv  758 (823)
                      +++.+|.|||++||+|||+||.|+++|.. -..+++|+|+|.++.+...+   ...+.+..|--||.+.. ..|+-.-|+
T Consensus       140 elLkALdyCHS~GImHRDVKPhNvmIdh~~rkLrlIDWGLAEFYHp~~eY---nVRVASRyfKGPELLVdy~~YDYSLD~  216 (338)
T KOG0668|consen  140 ELLKALDYCHSMGIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPGKEY---NVRVASRYFKGPELLVDYQMYDYSLDM  216 (338)
T ss_pred             HHHHHHhHHHhcCcccccCCcceeeechhhceeeeeecchHhhcCCCcee---eeeeehhhcCCchheeechhccccHHH
Confidence            88999999999999999999999999954 57999999999998766543   34567888999997654 558889999


Q ss_pred             ehhhhhhccccCCCCCcCC
Q 045449          759 CSFGIISGGKETRSMTVGE  777 (823)
Q Consensus       759 ~S~Gvv~~~~~~~~~~~~~  777 (823)
                      |||||+++.|.|.+.||-.
T Consensus       217 WS~GcmlA~miFrkepFFh  235 (338)
T KOG0668|consen  217 WSLGCMLASMIFRKEPFFH  235 (338)
T ss_pred             HHHHHHHHHHHhccCcccC
Confidence            9999999999999999843

>cd05053 PTKc_FGFR Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors

Probab=99.81  E-value=1.9e-20  Score=200.44  Aligned_cols=137  Identities=31%  Similarity=0.373  Sum_probs=111.6

Q ss_pred             eEEEEEEehHhh-HHHHHHHHHHHHHHhhc-chhhHHH------------------------------------------
Q 045449          642 MEVAVKVFHQQY-ERALKSFEDECEVRKRI-RHRNLVK------------------------------------------  677 (823)
Q Consensus       642 ~~vavK~~~~~~-~~~~~~~~~E~~~l~~l-~h~niv~------------------------------------------  677 (823)
                      ..||+|++.... .+...++.+|++++.++ +|+||++                                          
T Consensus        43 ~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~~~~li~e~~~~~~L~~~l~~~~~~~~~~~~~~~  122 (293)
T cd05053          43 STVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGVCTQEGPLYVVVEYAAHGNLRDFLRARRPPGEYASPDDP  122 (293)
T ss_pred             eeEEEEEccCCCCHHHHHHHHHHHHHHHhhcCCCCeeeEEEEEcCCCCeEEEEEeCCCCcHHHHHHhcCCCccccccccc
Confidence            568999887532 34456799999999999 7999986                                          


Q ss_pred             --------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCc
Q 045449          678 --------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMA  743 (823)
Q Consensus       678 --------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~a  743 (823)
                                    ++.|++.+|.|+|+.+|+||||||+||++++++.+||+|||+++.+.............++..|+|
T Consensus       123 ~~~~~~l~~~~~~~i~~qi~~al~~LH~~~ivH~dlkp~Nil~~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~a  202 (293)
T cd05053         123 RPPEETLTQKDLVSFAYQVARGMEFLASKKCIHRDLAARNVLVTEDHVMKIADFGLARDIHHIDYYRKTTNGRLPVKWMA  202 (293)
T ss_pred             cccccccCHHHHHHHHHHHHHHHHHHHHCCccccccceeeEEEcCCCeEEeCccccccccccccceeccCCCCCCccccC
Confidence                          245788889999999999999999999999999999999999987654333222233345678999


Q ss_pred             ccccCCCccccccceehhhhhhccccC-CCCCcCCC
Q 045449          744 PEYGTKGRVSTRGDVCSFGIISGGKET-RSMTVGET  778 (823)
Q Consensus       744 PE~~~~~~~~~~~Dv~S~Gvv~~~~~~-~~~~~~~~  778 (823)
                      ||+..+..++.++|||||||++|++++ |..||...
T Consensus       203 PE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~  238 (293)
T cd05053         203 PEALFDRVYTHQSDVWSFGVLLWEIFTLGGSPYPGI  238 (293)
T ss_pred             HHHhccCCcCcccceeehhhHHHHHhcCCCCCCCCC
Confidence            999988889999999999999999886 88887654

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation,

>cd06658 STKc_PAK5 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5

Probab=99.81  E-value=2.3e-20  Score=199.55  Aligned_cols=136  Identities=27%  Similarity=0.322  Sum_probs=116.2

Q ss_pred             CeEEEEEEehHhhHHHHHHHHHHHHHHhhcchhhHHH---------------------------------------HHHH
Q 045449          641 GMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVK---------------------------------------IISS  681 (823)
Q Consensus       641 ~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~---------------------------------------~~~~  681 (823)
                      +..||||.+........+.+.+|+.++++++|+||++                                       ++.|
T Consensus        47 ~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~ii~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~l~~~~~~~~~~q  126 (292)
T cd06658          47 GKQVAVKKMDLRKQQRRELLFNEVVIMRDYHHENVVDMYNSYLVGDELWVVMEFLEGGALTDIVTHTRMNEEQIATVCLS  126 (292)
T ss_pred             CCEEEEEEEecchHHHHHHHHHHHHHHHhCCCCcHHHHHHheecCCeEEEEEeCCCCCcHHHHHhcCCCCHHHHHHHHHH
Confidence            5779999987655556678999999999999999999                                       2467


Q ss_pred             HHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccCCCccccccceehh
Q 045449          682 SLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSF  761 (823)
Q Consensus       682 ~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~  761 (823)
                      ++.+|.|+|+.+|+||||||+||+++.++.+||+|||++........  ......|+..|+|||+..+..++.++|||||
T Consensus       127 i~~~l~~LH~~~ivH~dlkp~Nill~~~~~~kL~dfg~~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~sl  204 (292)
T cd06658         127 VLRALSYLHNQGVIHRDIKSDSILLTSDGRIKLSDFGFCAQVSKEVP--KRKSLVGTPYWMAPEVISRLPYGTEVDIWSL  204 (292)
T ss_pred             HHHHHHHHHHCCEeecCCCHHHEEEcCCCCEEEccCcchhhcccccc--cCceeecCccccCHHHHccCCCCchhhHHHH
Confidence            88899999999999999999999999999999999999876543221  2234568999999999988889999999999


Q ss_pred             hhhhccccCCCCCcCCC
Q 045449          762 GIISGGKETRSMTVGET  778 (823)
Q Consensus       762 Gvv~~~~~~~~~~~~~~  778 (823)
                      ||+++++.+|..||...
T Consensus       205 Gvil~el~~g~~p~~~~  221 (292)
T cd06658         205 GIMVIEMIDGEPPYFNE  221 (292)
T ss_pred             HHHHHHHHhCCCCCCCC
Confidence            99999999999998653

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly express

>PF07714 Pkinase_Tyr: Protein tyrosine kinase Protein kinase; unclassified specificity

Probab=99.81  E-value=3.9e-21  Score=201.72  Aligned_cols=179  Identities=25%  Similarity=0.352  Sum_probs=128.3

Q ss_pred             CeEEEEEEehHhh-HHHHHHHHHHHHHHhhcchhhHHH------------------------------------------
Q 045449          641 GMEVAVKVFHQQY-ERALKSFEDECEVRKRIRHRNLVK------------------------------------------  677 (823)
Q Consensus       641 ~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~------------------------------------------  677 (823)
                      +..||||++.... ....+.|.+|++.+++++||||++                                          
T Consensus        28 ~~~V~vk~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~g~~~~~~~~~lv~e~~~~g~L~~~L~~~~~~~~~~~~~~~  107 (259)
T PF07714_consen   28 NQPVAVKILKPSSSEEEEEEFLNEIQILRKLRHPNIVKLYGFCIENEPLFLVMEYCPGGSLDDYLKSKNKEPLSEQQRLS  107 (259)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHHHHHHTHSBTTBE-EEEEEESSSSEEEEEE--TTEBHHHHHHHTCTTTSBHHHHHH
T ss_pred             CEEEEEEEeccccccccceeeeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            5679999996533 445789999999999999999999                                          


Q ss_pred             HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccCCCccccccc
Q 045449          678 IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGD  757 (823)
Q Consensus       678 ~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~D  757 (823)
                      ++.|++++|+|+|+.+++|+||+++||+++.++.+||+|||+++...............+...|+|||.+....++.++|
T Consensus       108 i~~~i~~~l~~Lh~~~iiH~~l~~~nill~~~~~~Kl~~f~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~ksD  187 (259)
T PF07714_consen  108 IAIQIAEALSYLHSNNIIHGNLSPSNILLDSNGQVKLSDFGLSRPISEKSKYKNDSSQQLPLRYLAPEVLKDGEYTKKSD  187 (259)
T ss_dssp             HHHHHHHHHHHHHHTTEEEST-SGGGEEEETTTEEEEESTTTGEETTTSSSEEESTTSESGGGGS-HHHHHHSEESHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            35688889999999999999999999999999999999999998763333322233445778999999998888999999


Q ss_pred             eehhhhhhccccC-CCCCcCCCcccccccccccCCcccccccCCCcccccccccccccccccCC
Q 045449          758 VCSFGIISGGKET-RSMTVGETCTPVRESKYEVHPATTTIMEHPLPRVGEVMDVDRGKARIQGK  820 (823)
Q Consensus       758 v~S~Gvv~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  820 (823)
                      |||||++++|+.+ +..|+.+.......... ...............+.+++..+....+-+||
T Consensus       188 VysfG~~l~ei~~~~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~li~~C~~~~p~~RP  250 (259)
T PF07714_consen  188 VYSFGMLLYEILTLGKFPFSDYDNEEIIEKL-KQGQRLPIPDNCPKDIYSLIQQCWSHDPEKRP  250 (259)
T ss_dssp             HHHHHHHHHHHHTTSSGTTTTSCHHHHHHHH-HTTEETTSBTTSBHHHHHHHHHHT-SSGGGS-
T ss_pred             ccccccccccccccccccccccccccccccc-cccccceeccchhHHHHHHHHHHcCCChhhCc
Confidence            9999999999999 67888765332211111 11111222333445555666555555444444

Tyrosine kinase, catalytic domain; InterPro: IPR001245 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. ; GO: 0004672 protein kinase activity, 0006468 protein phosphorylation; PDB: 2HYY_C 1OPL_A 2V7A_A 2G2H_B 2G1T_A 3PYY_A 3CS9_D 2HZI_A 2E2B_A 2HIW_A ....

>cd05036 PTKc_ALK_LTK Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase

Probab=99.81  E-value=1.3e-20  Score=199.92  Aligned_cols=137  Identities=26%  Similarity=0.335  Sum_probs=109.4

Q ss_pred             eEEEEEEehHhh-HHHHHHHHHHHHHHhhcchhhHHH-------------------------------------------
Q 045449          642 MEVAVKVFHQQY-ERALKSFEDECEVRKRIRHRNLVK-------------------------------------------  677 (823)
Q Consensus       642 ~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~-------------------------------------------  677 (823)
                      ..||+|.+.... ......|.+|+.++++++|+||++                                           
T Consensus        37 ~~v~ik~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~g~~L~~~i~~~~~~~~~~~~~~~~  116 (277)
T cd05036          37 LQVAVKTLPESCSEQDESDFLMEALIMSKFNHQNIVRLIGVSFERLPRFILLELMAGGDLKSFLRENRPRPERPSSLTMK  116 (277)
T ss_pred             eeEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEccCCCcEEEEecCCCCCHHHHHHHhCCCCCCCCCCCHH
Confidence            568899886433 344567999999999999999998                                           


Q ss_pred             ----HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCC---cEEEeecccccccCCCCccccccccccCCCcCcccccCCC
Q 045449          678 ----IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDM---VAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKG  750 (823)
Q Consensus       678 ----~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~---~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~  750 (823)
                          ++.|++.+|+|+|+.+++||||||+||+++.++   .+||+|||+++................+..|+|||++.+.
T Consensus       117 ~~~~~~~qi~~~l~~LH~~~ivH~dlkp~nil~~~~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~  196 (277)
T cd05036         117 DLLFCARDVAKGCKYLEENHFIHRDIAARNCLLTCKGPGRVAKIADFGMARDIYRASYYRKGGRAMLPIKWMPPEAFLDG  196 (277)
T ss_pred             HHHHHHHHHHHHHHHHHHCCEeecccchheEEEeccCCCcceEeccCccccccCCccceecCCCCCccHhhCCHHHHhcC
Confidence                245778889999999999999999999998654   6999999999876432221112223345689999999888


Q ss_pred             ccccccceehhhhhhccccC-CCCCcCCC
Q 045449          751 RVSTRGDVCSFGIISGGKET-RSMTVGET  778 (823)
Q Consensus       751 ~~~~~~Dv~S~Gvv~~~~~~-~~~~~~~~  778 (823)
                      .++.++|||||||+++++++ |..||...
T Consensus       197 ~~~~~~DiwslG~il~el~~~g~~pf~~~  225 (277)
T cd05036         197 IFTSKTDVWSFGVLLWEIFSLGYMPYPGR  225 (277)
T ss_pred             CcCchhHHHHHHHHHHHHHcCCCCCCCCC
Confidence            89999999999999999986 88888654

Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well

>cd05069 PTKc_Yes Catalytic domain of the Protein Tyrosine Kinase, Yes

Probab=99.81  E-value=1.2e-20  Score=198.07  Aligned_cols=135  Identities=27%  Similarity=0.460  Sum_probs=111.4

Q ss_pred             eEEEEEEehHhhHHHHHHHHHHHHHHhhcchhhHHH-----------------------------------------HHH
Q 045449          642 MEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVK-----------------------------------------IIS  680 (823)
Q Consensus       642 ~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~-----------------------------------------~~~  680 (823)
                      ..||+|++.... ...+.|.+|++++++++|+|+++                                         ++.
T Consensus        31 ~~~~lK~~~~~~-~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~  109 (260)
T cd05069          31 TKVAIKTLKPGT-MMPEAFLQEAQIMKKLRHDKLVPLYAVVSEEPIYIVTEFMGKGSLLDFLKEGDGKYLKLPQLVDMAA  109 (260)
T ss_pred             ceEEEEEcccCC-ccHHHHHHHHHHHHhCCCCCeeeEEEEEcCCCcEEEEEcCCCCCHHHHHhhCCCCCCCHHHHHHHHH
Confidence            458999886543 23467899999999999999997                                         246


Q ss_pred             HHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccCCCccccccceeh
Q 045449          681 SSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCS  760 (823)
Q Consensus       681 ~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S  760 (823)
                      |++++|.|+|+.+++||||||+||++++++.+||+|||+++....... .......++..|+|||+..+..++.++||||
T Consensus       110 ~l~~al~~lH~~~i~H~dl~~~Nill~~~~~~~l~dfg~~~~~~~~~~-~~~~~~~~~~~y~~Pe~~~~~~~~~~~Di~s  188 (260)
T cd05069         110 QIADGMAYIERMNYIHRDLRAANILVGDNLVCKIADFGLARLIEDNEY-TARQGAKFPIKWTAPEAALYGRFTIKSDVWS  188 (260)
T ss_pred             HHHHHHHHHHhCCEeecccCcceEEEcCCCeEEECCCccceEccCCcc-cccCCCccchhhCCHHHhccCCcChHHHHHH
Confidence            888999999999999999999999999999999999999987543221 1112234677899999998888999999999


Q ss_pred             hhhhhccccC-CCCCcCCC
Q 045449          761 FGIISGGKET-RSMTVGET  778 (823)
Q Consensus       761 ~Gvv~~~~~~-~~~~~~~~  778 (823)
                      |||++|++.+ |..||.+.
T Consensus       189 lG~~l~el~t~g~~p~~~~  207 (260)
T cd05069         189 FGILLTELVTKGRVPYPGM  207 (260)
T ss_pred             HHHHHHHHHhCCCCCCCCC
Confidence            9999999998 88888664

Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine an

>cd05061 PTKc_InsR Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor

Probab=99.81  E-value=1.3e-20  Score=201.06  Aligned_cols=152  Identities=22%  Similarity=0.340  Sum_probs=119.1

Q ss_pred             hccCCccceeeccC-----------------CeEEEEEEehHhh-HHHHHHHHHHHHHHhhcchhhHHH-----------
Q 045449          627 TDRFSENNLIGIGN-----------------GMEVAVKVFHQQY-ERALKSFEDECEVRKRIRHRNLVK-----------  677 (823)
Q Consensus       627 t~~f~~~~~lg~g~-----------------~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~-----------  677 (823)
                      +++|...+.+|.|+                 +..||+|.+.... ......+.+|+.++++++||||++           
T Consensus         5 ~~~~~i~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~   84 (288)
T cd05061           5 REKITLLRELGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASLRERIEFLNEASVMKGFTCHHVVRLLGVVSKGQPT   84 (288)
T ss_pred             HHHceeeeeecCCCCcEEEEEEEeccCCCCcceEEEEEECCCcCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEcCCCCc
Confidence            45566666666664                 2368999876443 233457889999999999999998           


Q ss_pred             ---------------------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecc
Q 045449          678 ---------------------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFG  718 (823)
Q Consensus       678 ---------------------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfG  718 (823)
                                                             ++.|++.+|.|+|+++|+||||||+||+++.++.+|++|||
T Consensus        85 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~i~H~dikp~nili~~~~~~~L~Dfg  164 (288)
T cd05061          85 LVVMELMAHGDLKSYLRSLRPEAENNPGRPPPTLQEMIQMAAEIADGMAYLNAKKFVHRDLAARNCMVAHDFTVKIGDFG  164 (288)
T ss_pred             EEEEeCCCCCCHHHHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCcCCCCChheEEEcCCCcEEECcCC
Confidence                                                   13467788999999999999999999999999999999999


Q ss_pred             cccccCCCCccccccccccCCCcCcccccCCCccccccceehhhhhhccccC-CCCCcCCC
Q 045449          719 IAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKET-RSMTVGET  778 (823)
Q Consensus       719 la~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~-~~~~~~~~  778 (823)
                      +++...............++..|+|||...++.++.++|||||||+++++.+ +..||...
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~y~~pE~~~~~~~~~~~DvwslG~~l~el~~~~~~p~~~~  225 (288)
T cd05061         165 MTRDIYETDYYRKGGKGLLPVRWMAPESLKDGVFTTSSDMWSFGVVLWEITSLAEQPYQGL  225 (288)
T ss_pred             ccccccccccccccCCCcccccccCHHHhccCCCChHhHHHHHHHHHHHHHhCCCCCCCCC
Confidence            9986543332222223345778999999988889999999999999999987 67777653

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein meta

>cd05070 PTKc_Fyn_Yrk Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk

Probab=99.81  E-value=8.5e-21  Score=199.30  Aligned_cols=148  Identities=27%  Similarity=0.441  Sum_probs=117.9

Q ss_pred             cCCccceeeccC-----------CeEEEEEEehHhhHHHHHHHHHHHHHHhhcchhhHHH--------------------
Q 045449          629 RFSENNLIGIGN-----------GMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVK--------------------  677 (823)
Q Consensus       629 ~f~~~~~lg~g~-----------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~--------------------  677 (823)
                      +|+..+.+|.|+           +..||+|.+..... ..++|.+|++++++++|+++++                    
T Consensus         7 ~~~~~~~ig~g~~~~v~~~~~~~~~~~~~k~~~~~~~-~~~~~~~E~~~l~~l~~~~i~~~~~~~~~~~~~lv~e~~~~~   85 (260)
T cd05070           7 SLQLIKKLGNGQFGEVWMGTWNGNTKVAVKTLKPGTM-SPESFLEEAQIMKKLRHDKLVQLYAVVSEEPIYIVTEYMSKG   85 (260)
T ss_pred             HhhhhheeccccCceEEEEEecCCceeEEEEecCCCC-CHHHHHHHHHHHHhcCCCceEEEEeEECCCCcEEEEEecCCC
Confidence            445556666664           35689998865432 2357999999999999999987                    


Q ss_pred             ---------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccc
Q 045449          678 ---------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTL  736 (823)
Q Consensus       678 ---------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~  736 (823)
                                           ++.+++.+|+|+|+.+++||||||+||++++++.+||+|||+++........ ......
T Consensus        86 ~L~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH~~~i~H~di~p~Nili~~~~~~~l~dfg~~~~~~~~~~~-~~~~~~  164 (260)
T cd05070          86 SLLDFLKDGEGRALKLPNLVDMAAQVAAGMAYIERMNYIHRDLRSANILVGDGLVCKIADFGLARLIEDNEYT-ARQGAK  164 (260)
T ss_pred             cHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCccceEEEeCCceEEeCCceeeeeccCcccc-cccCCC
Confidence                                 3568888999999999999999999999999999999999999876433211 112234


Q ss_pred             cCCCcCcccccCCCccccccceehhhhhhccccC-CCCCcCCC
Q 045449          737 ATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKET-RSMTVGET  778 (823)
Q Consensus       737 gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~-~~~~~~~~  778 (823)
                      ++..|+|||+..+..++.++|||||||+++++.+ |..||.+.
T Consensus       165 ~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~~g~~p~~~~  207 (260)
T cd05070         165 FPIKWTAPEAALYGRFTIKSDVWSFGILLTELVTKGRVPYPGM  207 (260)
T ss_pred             CCccccChHHHhcCCCcchhhhHHHHHHHHHHHhcCCCCCCCC
Confidence            5678999999988889999999999999999998 78888653

Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that r

>cd06632 STKc_MEKK1_plant Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

Probab=99.81  E-value=2e-20  Score=195.99  Aligned_cols=136  Identities=25%  Similarity=0.280  Sum_probs=114.3

Q ss_pred             CeEEEEEEehHhh-----HHHHHHHHHHHHHHhhcchhhHHH--------------------------------------
Q 045449          641 GMEVAVKVFHQQY-----ERALKSFEDECEVRKRIRHRNLVK--------------------------------------  677 (823)
Q Consensus       641 ~~~vavK~~~~~~-----~~~~~~~~~E~~~l~~l~h~niv~--------------------------------------  677 (823)
                      +..||+|.+....     ....+.+.+|++++++++|+||++                                      
T Consensus        25 ~~~~~ik~~~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~  104 (258)
T cd06632          25 GDFFAVKEVSLADDGQTGQEAVKQLEQEIALLSKLQHPNIVQYLGTEREEDNLYIFLELVPGGSLAKLLKKYGSFPEPVI  104 (258)
T ss_pred             CcEEEEEEEEEccccccchHHHHHHHHHHHHHHhcCCCCchheeeeEecCCeEEEEEEecCCCcHHHHHHhcCCCCHHHH
Confidence            5679999875432     345578999999999999999998                                      


Q ss_pred             --HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccCCCc-ccc
Q 045449          678 --IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGR-VST  754 (823)
Q Consensus       678 --~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~-~~~  754 (823)
                        ++.|+++++.|+|+.+++|+||||+||+++.++.+||+|||+++......   ......|+..|+|||.+.... ++.
T Consensus       105 ~~~~~~i~~~l~~lH~~~i~H~dl~~~ni~~~~~~~~kl~d~~~~~~~~~~~---~~~~~~~~~~y~~pe~~~~~~~~~~  181 (258)
T cd06632         105 RLYTRQILLGLEYLHDRNTVHRDIKGANILVDTNGVVKLADFGMAKQVVEFS---FAKSFKGSPYWMAPEVIAQQGGYGL  181 (258)
T ss_pred             HHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCCEEEccCccceeccccc---cccccCCCcceeCHHHhcCCCCCCc
Confidence              24578889999999999999999999999999999999999988754332   123456889999999887766 899


Q ss_pred             ccceehhhhhhccccCCCCCcCCCc
Q 045449          755 RGDVCSFGIISGGKETRSMTVGETC  779 (823)
Q Consensus       755 ~~Dv~S~Gvv~~~~~~~~~~~~~~~  779 (823)
                      ++|+|||||+++++.+|..||.+..
T Consensus       182 ~~D~~slG~~l~~l~~g~~pf~~~~  206 (258)
T cd06632         182 AADIWSLGCTVLEMATGKPPWSQLE  206 (258)
T ss_pred             hhhhHHHHHHHHHHHhCCCCcccCc
Confidence            9999999999999999999987654

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidops

>KOG0695 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.81  E-value=1.3e-20  Score=187.76  Aligned_cols=149  Identities=23%  Similarity=0.244  Sum_probs=119.5

Q ss_pred             ccCCccceeeccC------------CeEEEEEEehHhh---HHHHHHHHHHHHHHhhc-chhhHHH--------------
Q 045449          628 DRFSENNLIGIGN------------GMEVAVKVFHQQY---ERALKSFEDECEVRKRI-RHRNLVK--------------  677 (823)
Q Consensus       628 ~~f~~~~~lg~g~------------~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l-~h~niv~--------------  677 (823)
                      ++|+.-.+||+|+            .+.+|+|+++++.   .+.++=...|..+..+. +||.+|.              
T Consensus       250 ~df~ll~vigrgsyakvl~~~~~~t~qiyamkvvkkel~nddedidwvqtek~vfe~asn~pflvglhscfqtesrlffv  329 (593)
T KOG0695|consen  250 QDFDLLRVIGRGSYAKVLLVRLKKTDQIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNNPFLVGLHSCFQTESRLFFV  329 (593)
T ss_pred             ccceeeeeecCcchhhhhheehcccceeeehhhHHHHhcCCcccchhHHhhHHHHHhccCCCeEEehhhhhcccceEEEE
Confidence            4677777888875            4668999987654   22233344555555554 5777775              


Q ss_pred             --------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCcccc
Q 045449          678 --------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSK  731 (823)
Q Consensus       678 --------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~  731 (823)
                                                +-+.+.-+|||+|++||+.||+|.+|||+|..|++|++|+|+++.--....  .
T Consensus       330 ieyv~ggdlmfhmqrqrklpeeharfys~ei~lal~flh~rgiiyrdlkldnvlldaeghikltdygmcke~l~~gd--~  407 (593)
T KOG0695|consen  330 IEYVNGGDLMFHMQRQRKLPEEHARFYSAEICLALNFLHERGIIYRDLKLDNVLLDAEGHIKLTDYGMCKEGLGPGD--T  407 (593)
T ss_pred             EEEecCcceeeehhhhhcCcHHHhhhhhHHHHHHHHHHhhcCeeeeeccccceEEccCCceeecccchhhcCCCCCc--c
Confidence                                      346788899999999999999999999999999999999999986433222  3


Q ss_pred             ccccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCC
Q 045449          732 QTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       732 ~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      .++++|||.|+|||++.+..|+..+|+|++||+++||+.|+.||+-.
T Consensus       408 tstfcgtpnyiapeilrgeeygfsvdwwalgvlmfemmagrspfdiv  454 (593)
T KOG0695|consen  408 TSTFCGTPNYIAPEILRGEEYGFSVDWWALGVLMFEMMAGRSPFDIV  454 (593)
T ss_pred             cccccCCCcccchhhhcccccCceehHHHHHHHHHHHHcCCCCccee
Confidence            45789999999999999999999999999999999999999999643

>cd07870 STKc_PFTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-2 kinase

Probab=99.81  E-value=1.2e-20  Score=201.68  Aligned_cols=152  Identities=25%  Similarity=0.270  Sum_probs=122.2

Q ss_pred             HhccCCccceeeccC------------CeEEEEEEehHhh-HHHHHHHHHHHHHHhhcchhhHHH---------------
Q 045449          626 ATDRFSENNLIGIGN------------GMEVAVKVFHQQY-ERALKSFEDECEVRKRIRHRNLVK---------------  677 (823)
Q Consensus       626 at~~f~~~~~lg~g~------------~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~---------------  677 (823)
                      |+++|...+.||.|+            +..||+|++.... ......+.+|++++++++|+||++               
T Consensus         3 ~~~~y~~~~~ig~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~lv~   82 (291)
T cd07870           3 AATSYLNLEKLGEGSYATVYKGISRINGQLVALKVISMKTEEGVPFTAIREASLLKGLKHANIVLLHDIIHTKETLTFVF   82 (291)
T ss_pred             ccceeEEEEEEEecCCEEEEEEEEcCCCcEEEEEEecccCcCCCcHHHHHHHHHHHhcCCCCEeEEEEEEecCCeEEEEE
Confidence            456777778888774            5679999986443 222346788999999999999987               


Q ss_pred             -------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccc
Q 045449          678 -------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQ  732 (823)
Q Consensus       678 -------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~  732 (823)
                                               ++.|++.+|+|+|+.+|+||||||+||+++.++.+||+|||+++.......  ..
T Consensus        83 e~~~~~l~~~~~~~~~~~~~~~~~~~~~qi~~~L~~lH~~~i~H~dlkp~Nil~~~~~~~~l~Dfg~~~~~~~~~~--~~  160 (291)
T cd07870          83 EYMHTDLAQYMIQHPGGLHPYNVRLFMFQLLRGLAYIHGQHILHRDLKPQNLLISYLGELKLADFGLARAKSIPSQ--TY  160 (291)
T ss_pred             ecccCCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCChHHEEEcCCCcEEEeccccccccCCCCC--CC
Confidence                                     346888999999999999999999999999999999999999986432221  12


Q ss_pred             cccccCCCcCcccccCCC-ccccccceehhhhhhccccCCCCCcCCCc
Q 045449          733 TQTLATIGYMAPEYGTKG-RVSTRGDVCSFGIISGGKETRSMTVGETC  779 (823)
Q Consensus       733 ~~~~gt~~y~aPE~~~~~-~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~~  779 (823)
                      ....+++.|+|||++.+. .++.++||||+||+++++.+|..||....
T Consensus       161 ~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~~l~~g~~~f~~~~  208 (291)
T cd07870         161 SSEVVTLWYRPPDVLLGATDYSSALDIWGAGCIFIEMLQGQPAFPGVS  208 (291)
T ss_pred             CCccccccccCCceeecCCCCCcHHHHHHHHHHHHHHHhCCCCCCCch
Confidence            234578999999998754 47889999999999999999999987543

Serine/Threonine Kinases (STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-2 is also referred to as ALS2CR7 (amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 7). It may be associated with amyotrophic lateral sclerosis 2 (ALS2), an autosomal recess

>cd07873 STKc_PCTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase

Probab=99.81  E-value=1.3e-20  Score=202.49  Aligned_cols=149  Identities=25%  Similarity=0.313  Sum_probs=118.6

Q ss_pred             ccCCccceeeccC------------CeEEEEEEehHhh-HHHHHHHHHHHHHHhhcchhhHHH-----------------
Q 045449          628 DRFSENNLIGIGN------------GMEVAVKVFHQQY-ERALKSFEDECEVRKRIRHRNLVK-----------------  677 (823)
Q Consensus       628 ~~f~~~~~lg~g~------------~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~-----------------  677 (823)
                      ++|...+.||.|+            +..||+|.+.... ......+.+|++++++++||||++                 
T Consensus         6 ~~y~~~~~lg~g~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~nI~~~~~~~~~~~~~~lv~e~   85 (301)
T cd07873           6 ETYIKLDKLGEGTYATVYKGRSKLTDNLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIIHTEKSLTLVFEY   85 (301)
T ss_pred             cceEEeeEeccCcCEEEEEEEEcCCCcEEEEEEEecccccCchhHHHHHHHHHHhcCCCCcceEEEEEecCCeEEEEEec
Confidence            3455556666654            5679999986433 223356788999999999999998                 


Q ss_pred             -----------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccc
Q 045449          678 -----------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQ  734 (823)
Q Consensus       678 -----------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~  734 (823)
                                             ++.|++.+|.|+|+.+|+||||||+||+++.++.+||+|||+++.......  ....
T Consensus        86 ~~~~l~~~l~~~~~~~~~~~~~~~~~qi~~aL~~lH~~~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~~~--~~~~  163 (301)
T cd07873          86 LDKDLKQYLDDCGNSINMHNVKLFLFQLLRGLNYCHRRKVLHRDLKPQNLLINERGELKLADFGLARAKSIPTK--TYSN  163 (301)
T ss_pred             cccCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCCHHHEEECCCCcEEECcCcchhccCCCCC--cccc
Confidence                                   246888999999999999999999999999999999999999976432221  1223


Q ss_pred             cccCCCcCcccccCCC-ccccccceehhhhhhccccCCCCCcCCC
Q 045449          735 TLATIGYMAPEYGTKG-RVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       735 ~~gt~~y~aPE~~~~~-~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      ..+++.|+|||++.+. .++.++||||+||+++++.+|..||...
T Consensus       164 ~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~~l~el~tg~~~f~~~  208 (301)
T cd07873         164 EVVTLWYRPPDILLGSTDYSTQIDMWGVGCIFYEMSTGRPLFPGS  208 (301)
T ss_pred             cceeecccCcHHHhCCCCCccHHHHHHHHHHHHHHHhCCCCCCCC
Confidence            4678999999987654 4788999999999999999999998653

Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may pl

>cd05057 PTKc_EGFR_like Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

Probab=99.81  E-value=2.7e-20  Score=197.66  Aligned_cols=138  Identities=25%  Similarity=0.294  Sum_probs=113.0

Q ss_pred             eEEEEEEehHhh-HHHHHHHHHHHHHHhhcchhhHHH----------------------------------------HHH
Q 045449          642 MEVAVKVFHQQY-ERALKSFEDECEVRKRIRHRNLVK----------------------------------------IIS  680 (823)
Q Consensus       642 ~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~----------------------------------------~~~  680 (823)
                      ..||+|+..... .....++.+|+.++++++||||++                                        ++.
T Consensus        37 ~~~aik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~v~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~  116 (279)
T cd05057          37 IPVAIKVLREETSPKANKEILDEAYVMASVDHPHVVRLLGICLSSQVQLITQLMPLGCLLDYVRNHKDNIGSQYLLNWCV  116 (279)
T ss_pred             eEEEEEeccCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEecCceEEEEecCCCCcHHHHHHhccCCCCHHHHHHHHH
Confidence            358999886543 345578999999999999999997                                        356


Q ss_pred             HHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccCCCccccccceeh
Q 045449          681 SSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCS  760 (823)
Q Consensus       681 ~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S  760 (823)
                      |++.+|+|+|+.+++||||||+||+++.++.+||+|||+++...............++..|+|||......++.++||||
T Consensus       117 qi~~~l~~LH~~~i~H~di~p~nil~~~~~~~kL~dfg~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~s  196 (279)
T cd05057         117 QIAKGMSYLEEKRLVHRDLAARNVLVKTPQHVKITDFGLAKLLDVDEKEYHAEGGKVPIKWMALESILHRIYTHKSDVWS  196 (279)
T ss_pred             HHHHHHHHHHhCCEEecccCcceEEEcCCCeEEECCCcccccccCcccceecCCCcccccccCHHHhhcCCcCchhhHHH
Confidence            88889999999999999999999999999999999999998765433221112223467899999998888999999999


Q ss_pred             hhhhhccccC-CCCCcCCCc
Q 045449          761 FGIISGGKET-RSMTVGETC  779 (823)
Q Consensus       761 ~Gvv~~~~~~-~~~~~~~~~  779 (823)
                      |||+++++++ |..||....
T Consensus       197 lG~~l~el~~~g~~p~~~~~  216 (279)
T cd05057         197 YGVTVWELMTFGAKPYEGIP  216 (279)
T ss_pred             HHHHHHHHhcCCCCCCCCCC
Confidence            9999999997 898887643

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instea

>cd05042 PTKc_Aatyk Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases

Probab=99.81  E-value=1.9e-20  Score=197.79  Aligned_cols=138  Identities=20%  Similarity=0.250  Sum_probs=109.0

Q ss_pred             CeEEEEEEehHhh-HHHHHHHHHHHHHHhhcchhhHHH------------------------------------------
Q 045449          641 GMEVAVKVFHQQY-ERALKSFEDECEVRKRIRHRNLVK------------------------------------------  677 (823)
Q Consensus       641 ~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~------------------------------------------  677 (823)
                      ...||+|.+.... ......|.+|+++++.++|+||++                                          
T Consensus        22 ~~~~~~k~~~~~~~~~~~~~~~~e~~~~~~l~h~nii~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~  101 (269)
T cd05042          22 KARVVVKELRASATPDEQLLFLQEVQPYRELNHPNVLQCLGQCIESIPYLLVLEFCPLGDLKNYLRSNRGMVAQMAQKDV  101 (269)
T ss_pred             CeEEEEeecCccCChHHHHHHHHHHHHHHhCCCCCcceEEEEECCCCceEEEEEeCCCCcHHHHHHhccccccccccHHH
Confidence            3568999876433 344567899999999999999998                                          


Q ss_pred             ---HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccCC-----
Q 045449          678 ---IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTK-----  749 (823)
Q Consensus       678 ---~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-----  749 (823)
                         ++.|++.+|.|+|+.+|+||||||+||+++.++.+||+|||+++...............++..|+|||+...     
T Consensus       102 ~~~~~~qi~~~l~~lH~~~ivH~dlkp~Nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~  181 (269)
T cd05042         102 LQRMACEVASGLLWLHQADFIHSDLALRNCQLTADLSVKIGDYGLALEQYPEDYYITKDCHAVPLRWLAPELVEIRGQDL  181 (269)
T ss_pred             HHHHHHHHHHHHHHHHhcCEecccccHhheEecCCCcEEEeccccccccccchheeccCCCCCcccccCHHHHhhccccc
Confidence               235788889999999999999999999999999999999999876543322212233456778999998642     


Q ss_pred             --CccccccceehhhhhhccccC-CCCCcCCC
Q 045449          750 --GRVSTRGDVCSFGIISGGKET-RSMTVGET  778 (823)
Q Consensus       750 --~~~~~~~Dv~S~Gvv~~~~~~-~~~~~~~~  778 (823)
                        ..++.++||||+||+++++++ +..||...
T Consensus       182 ~~~~~~~~~DiwslG~~l~el~~~~~~p~~~~  213 (269)
T cd05042         182 LPKDQTKKSNIWSLGVTMWELFTAADQPYPDL  213 (269)
T ss_pred             cccccchhhHHHHHHHHHHHHHhCCCCCCCcC
Confidence              356889999999999999998 67777654

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kina

>cd05578 STKc_Yank1 Catalytic domain of the Protein Serine/Threonine Kinase, Yank1

Probab=99.81  E-value=3.1e-20  Score=194.72  Aligned_cols=136  Identities=30%  Similarity=0.355  Sum_probs=116.0

Q ss_pred             CeEEEEEEehHhh---HHHHHHHHHHHHHHhhcchhhHHH----------------------------------------
Q 045449          641 GMEVAVKVFHQQY---ERALKSFEDECEVRKRIRHRNLVK----------------------------------------  677 (823)
Q Consensus       641 ~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~----------------------------------------  677 (823)
                      +..||+|++....   ....+.+.+|++++++++||||++                                        
T Consensus        25 ~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~l~~~~~~~  104 (258)
T cd05578          25 KKMFAMKYMNKQKCVEKGSVRNVLNERRILQELNHPFLVNLWYSFQDEENMYLVVDLLLGGDLRYHLSQKVKFSEEQVKF  104 (258)
T ss_pred             CcEEEEEEEehhhhcchhHHHHHHHHHHHHHhCCCCChHHHHHhhcCCCeEEEEEeCCCCCCHHHHHHhcCCcCHHHHHH
Confidence            5779999997543   245678999999999999999998                                        


Q ss_pred             HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccCCCccccccc
Q 045449          678 IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGD  757 (823)
Q Consensus       678 ~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~D  757 (823)
                      ++.|++++|.|+|+.+++|+||||+||++++++.++|+|||.+.......   ......|+..|+|||+.....++.++|
T Consensus       105 ~~~~i~~~l~~lh~~~i~h~dl~~~nil~~~~~~~~l~d~~~~~~~~~~~---~~~~~~~~~~y~~PE~~~~~~~~~~~D  181 (258)
T cd05578         105 WICEIVLALEYLHSKGIIHRDIKPDNILLDEQGHVHITDFNIATKVTPDT---LTTSTSGTPGYMAPEVLCRQGYSVAVD  181 (258)
T ss_pred             HHHHHHHHHHHHHhCCeeccCCCHHHeEEcCCCCEEEeecccccccCCCc---cccccCCChhhcCHHHHcccCCCCccc
Confidence            24678888999999999999999999999999999999999988754332   123356889999999998888999999


Q ss_pred             eehhhhhhccccCCCCCcCCCc
Q 045449          758 VCSFGIISGGKETRSMTVGETC  779 (823)
Q Consensus       758 v~S~Gvv~~~~~~~~~~~~~~~  779 (823)
                      |||+|+++|++.+|..||....
T Consensus       182 i~slG~~l~~l~~g~~p~~~~~  203 (258)
T cd05578         182 WWSLGVTAYECLRGKRPYRGHS  203 (258)
T ss_pred             chhhHHHHHHHHhCCCCCCCCC
Confidence            9999999999999999987643

Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A.

>cd05079 PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=99.81  E-value=4.5e-20  Score=196.53  Aligned_cols=135  Identities=24%  Similarity=0.338  Sum_probs=111.6

Q ss_pred             CeEEEEEEehHhh-HHHHHHHHHHHHHHhhcchhhHHH------------------------------------------
Q 045449          641 GMEVAVKVFHQQY-ERALKSFEDECEVRKRIRHRNLVK------------------------------------------  677 (823)
Q Consensus       641 ~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~------------------------------------------  677 (823)
                      +..||+|.+.... ....+.|.+|++++++++|||+++                                          
T Consensus        33 ~~~va~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~lv~e~~~g~~L~~~l~~~~~~~~~~~~~  112 (284)
T cd05079          33 GEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKYKGICTEDGGNGIKLIMEFLPSGSLKEYLPRNKNKINLKQQL  112 (284)
T ss_pred             cceEEEEEcCccccHHHHHHHHHHHHHHHhCCCCCeeeeeeEEecCCCCceEEEEEccCCCCHHHHHHhccCCCCHHHHH
Confidence            5679999987443 344568999999999999999987                                          


Q ss_pred             -HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCcc-ccccccccCCCcCcccccCCCccccc
Q 045449          678 -IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQL-SKQTQTLATIGYMAPEYGTKGRVSTR  755 (823)
Q Consensus       678 -~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~  755 (823)
                       ++.|++.+|+|+|+.|++||||||+||+++.++.+||+|||+++........ .......++..|+|||+..+..++.+
T Consensus       113 ~i~~~i~~aL~~lH~~gi~H~dlkp~Nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~apE~~~~~~~~~~  192 (284)
T cd05079         113 KYAVQICKGMDYLGSRQYVHRDLAARNVLVESEHQVKIGDFGLTKAIETDKEYYTVKDDLDSPVFWYAPECLIQSKFYIA  192 (284)
T ss_pred             HHHHHHHHHHHHHHHCCeeecccchheEEEcCCCCEEECCCccccccccCccceeecCCCCCCccccCHHHhccCCCCcc
Confidence             3568888999999999999999999999999999999999999876433221 11223456778999999988889999


Q ss_pred             cceehhhhhhccccCCCCCc
Q 045449          756 GDVCSFGIISGGKETRSMTV  775 (823)
Q Consensus       756 ~Dv~S~Gvv~~~~~~~~~~~  775 (823)
                      +|||||||++++++++..+.
T Consensus       193 ~Di~slG~il~ellt~~~~~  212 (284)
T cd05079         193 SDVWSFGVTLYELLTYCDSE  212 (284)
T ss_pred             ccchhhhhhhhhhhcCCCCC
Confidence            99999999999999876554

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers a

>KOG4278 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=99.81  E-value=8.8e-21  Score=202.38  Aligned_cols=175  Identities=23%  Similarity=0.285  Sum_probs=134.5

Q ss_pred             EEEEEEehHhhHHHHHHHHHHHHHHhhcchhhHHHH------------------------------------------HH
Q 045449          643 EVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVKI------------------------------------------IS  680 (823)
Q Consensus       643 ~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~------------------------------------------~~  680 (823)
                      .||||.++.+. ..+++|..|+++|+.++|||+|++                                          +.
T Consensus       294 TvAVKtLKEDt-MeveEFLkEAAvMKeikHpNLVqLLGVCT~EpPFYIiTEfM~yGNLLdYLRecnr~ev~avvLlyMAt  372 (1157)
T KOG4278|consen  294 TVAVKTLKEDT-MEVEEFLKEAAVMKEIKHPNLVQLLGVCTHEPPFYIITEFMCYGNLLDYLRECNRSEVPAVVLLYMAT  372 (1157)
T ss_pred             eeehhhhhhcc-hhHHHHHHHHHHHHhhcCccHHHHhhhhccCCCeEEEEecccCccHHHHHHHhchhhcchhHHHHHHH
Confidence            48999997664 456899999999999999999992                                          34


Q ss_pred             HHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccCCCccccccceeh
Q 045449          681 SSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCS  760 (823)
Q Consensus       681 ~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S  760 (823)
                      |+..++.|+.....||||+-..|.|+.++..+||+|||++|.+..+. ++......-.+.|.|||.+....++.|+|||+
T Consensus       373 QIsSaMeYLEkknFIHRDLAARNCLVgEnhiVKvADFGLsRlMtgDT-YTAHAGAKFPIKWTAPEsLAyNtFSiKSDVWA  451 (1157)
T KOG4278|consen  373 QISSAMEYLEKKNFIHRDLAARNCLVGENHIVKVADFGLSRLMTGDT-YTAHAGAKFPIKWTAPESLAYNTFSIKSDVWA  451 (1157)
T ss_pred             HHHHHHHHHHHhhhhhhhhhhhhccccccceEEeeccchhhhhcCCc-eecccCccCcccccCcccccccccccchhhHH
Confidence            77777888888999999999999999999999999999999987543 33333333367899999999999999999999


Q ss_pred             hhhhhccccCC-CCCcCCCcccccccccccCCcccccccCCCcccccccccccccccccCC
Q 045449          761 FGIISGGKETR-SMTVGETCTPVRESKYEVHPATTTIMEHPLPRVGEVMDVDRGKARIQGK  820 (823)
Q Consensus       761 ~Gvv~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  820 (823)
                      |||++||+.|. ..|+.++......+..+. ......++.+.|.+-++|..+..-.+-+||
T Consensus       452 FGVLLWEIATYGMsPYPGidlSqVY~LLEk-gyRM~~PeGCPpkVYeLMraCW~WsPsDRP  511 (1157)
T KOG4278|consen  452 FGVLLWEIATYGMSPYPGIDLSQVYGLLEK-GYRMDGPEGCPPKVYELMRACWNWSPSDRP  511 (1157)
T ss_pred             HHHHHHHHHhcCCCCCCCccHHHHHHHHhc-cccccCCCCCCHHHHHHHHHHhcCCcccCc
Confidence            99999999874 456766644322222211 122334567778888888877766655555

>KOG1152 consensus Signal transduction serine/threonine kinase with PAS/PAC sensor domain [Signal transduction mechanisms]

Probab=99.81  E-value=2.5e-20  Score=198.39  Aligned_cols=146  Identities=22%  Similarity=0.329  Sum_probs=121.4

Q ss_pred             ccCCccceeeccC------------CeEEEEEEehHhhH--------HHHHHHHHHHHHHhhcc---hhhHHH-------
Q 045449          628 DRFSENNLIGIGN------------GMEVAVKVFHQQYE--------RALKSFEDECEVRKRIR---HRNLVK-------  677 (823)
Q Consensus       628 ~~f~~~~~lg~g~------------~~~vavK~~~~~~~--------~~~~~~~~E~~~l~~l~---h~niv~-------  677 (823)
                      ..|..-+.+|+|+            ...|+||.+.+++-        +.....-.|++||.+++   |+||++       
T Consensus       561 s~yttlq~lG~GAyGkV~lai~K~n~~eVViK~I~KeRIL~DtWvrDrkLGtVp~EIqIla~l~~~sH~NIlKlLdfFEd  640 (772)
T KOG1152|consen  561 SDYTTLQPLGEGAYGKVNLAIHKENNYEVVIKMIFKERILVDTWVRDRKLGTVPSEIQILATLNKHSHENILKLLDFFED  640 (772)
T ss_pred             ccceeeeeccccccceEEEeeecccceEEEeeehhhhhhhhhhhhcccccCccchhHHHHHHhhhcCccchhhhhheeec
Confidence            4577778889886            45699998876541        11123457999999997   999999       


Q ss_pred             ----------------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeeccccccc
Q 045449          678 ----------------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLL  723 (823)
Q Consensus       678 ----------------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~  723 (823)
                                                        ++.|++.++.|+|+.||||||||-+||.++.+|.+||+|||.|...
T Consensus       641 dd~yyl~te~hg~gIDLFd~IE~kp~m~E~eAk~IFkQV~agi~hlh~~~ivhrdikdenvivd~~g~~klidfgsaa~~  720 (772)
T KOG1152|consen  641 DDYYYLETEVHGEGIDLFDFIEFKPRMDEPEAKLIFKQVVAGIKHLHDQGIVHRDIKDENVIVDSNGFVKLIDFGSAAYT  720 (772)
T ss_pred             CCeeEEEecCCCCCcchhhhhhccCccchHHHHHHHHHHHhccccccccCceecccccccEEEecCCeEEEeeccchhhh
Confidence                                              3679999999999999999999999999999999999999998765


Q ss_pred             CCCCccccccccccCCCcCcccccCCCcc-ccccceehhhhhhccccCCCCCcCC
Q 045449          724 SGEDQLSKQTQTLATIGYMAPEYGTKGRV-STRGDVCSFGIISGGKETRSMTVGE  777 (823)
Q Consensus       724 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~S~Gvv~~~~~~~~~~~~~  777 (823)
                      ....    ...++||.+|+|||++.+.+| +..-|||++||++|-..+.+-||..
T Consensus       721 ksgp----fd~f~gtv~~aapevl~g~~y~gk~qdiwalgillytivykenpyyn  771 (772)
T KOG1152|consen  721 KSGP----FDVFVGTVDYAAPEVLGGEKYLGKPQDIWALGILLYTIVYKENPYYN  771 (772)
T ss_pred             cCCC----cceeeeeccccchhhhCCCccCCCcchhhhhhheeeEEEeccCCCcC
Confidence            4332    345789999999999999998 5668999999999999999888753

>PF00069 Pkinase: Protein kinase domain Protein kinase; unclassified specificity

Probab=99.80  E-value=2e-20  Score=196.15  Aligned_cols=146  Identities=32%  Similarity=0.421  Sum_probs=120.5

Q ss_pred             CccceeeccC------------CeEEEEEEehHhhHHH--HHHHHHHHHHHhhcchhhHHH-------------------
Q 045449          631 SENNLIGIGN------------GMEVAVKVFHQQYERA--LKSFEDECEVRKRIRHRNLVK-------------------  677 (823)
Q Consensus       631 ~~~~~lg~g~------------~~~vavK~~~~~~~~~--~~~~~~E~~~l~~l~h~niv~-------------------  677 (823)
                      +..+.||.|+            +..||+|++.......  .....+|+.++++++||||++                   
T Consensus         2 ~~~~~lg~G~~g~v~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~~v~~~~~   81 (260)
T PF00069_consen    2 RLVKKLGSGGFGTVYKAKNKKNGQKVAVKIIDKSEIEEEEREENIREIKILRRLRHPNIVQILDVFQDDNYLYIVMEYCP   81 (260)
T ss_dssp             EEEEEEEEESSEEEEEEEETTTTEEEEEEEEESTTHHHHHHHHHHHHHHHHHHHTBTTBCHEEEEEEESSEEEEEEEEET
T ss_pred             EEeEEEEeCCCEEEEEEEECCCCeEEEEEEeccccccccccchhhhhhhccccccccccccccccccccccccccccccc
Confidence            3456777775            5679999997654322  234566999999999999998                   


Q ss_pred             ---------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccc
Q 045449          678 ---------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTL  736 (823)
Q Consensus       678 ---------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~  736 (823)
                                           ++.|++++|+++|+.+++||||||+||+++.++.++|+|||.+......  ........
T Consensus        82 ~~~L~~~l~~~~~~~~~~~~~~~~qi~~~L~~Lh~~~i~H~dikp~NIl~~~~~~~~l~Dfg~~~~~~~~--~~~~~~~~  159 (260)
T PF00069_consen   82 GGSLQDYLQKNKPLSEEEILKIAYQILEALAYLHSKGIVHRDIKPENILLDENGEVKLIDFGSSVKLSEN--NENFNPFV  159 (260)
T ss_dssp             TEBHHHHHHHHSSBBHHHHHHHHHHHHHHHHHHHHTTEEESSBSGGGEEESTTSEEEESSGTTTEESTST--TSEBSSSS
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--cccccccc
Confidence                                 3678899999999999999999999999999999999999999764111  12234567


Q ss_pred             cCCCcCcccccC-CCccccccceehhhhhhccccCCCCCcCCC
Q 045449          737 ATIGYMAPEYGT-KGRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       737 gt~~y~aPE~~~-~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      ++..|+|||+.. +..++.++||||+|++++++++|..|+.+.
T Consensus       160 ~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~~~~p~~~~  202 (260)
T PF00069_consen  160 GTPEYMAPEVLQQGKKYTRKSDIWSLGIILYELLTGKLPFEES  202 (260)
T ss_dssp             SSGGGSCHHHHTTTSSBSTHHHHHHHHHHHHHHHHSSSSSTTS
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccc
Confidence            899999999988 788999999999999999999999999875

Serine/Threonine protein kinases, catalytic domain Tyrosine kinase, catalytic domain; InterPro: IPR017442 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Eukaryotic protein kinases [, , , , ] are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. There are a number of conserved regions in the catalytic domain of protein kinases. In the N-terminal extremity of the catalytic domain there is a glycine-rich stretch of residues in the vicinity of a lysine residue, which has been shown to be involved in ATP binding. In the central part of the catalytic domain there is a conserved aspartic acid residue which is important for the catalytic activity of the enzyme []. This entry includes protein kinases from eukaryotes and viruses and may include some bacterial hits too.; GO: 0004672 protein kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 3GC7_A 3ZYA_A 3MPT_A 3NEW_A 3MVM_A 1R3C_A 2FST_X 3E93_A 3HV5_B 3OCG_A ....

>KOG0665 consensus Jun-N-terminal kinase (JNK) [Signal transduction mechanisms]

Probab=99.80  E-value=8.5e-21  Score=189.34  Aligned_cols=134  Identities=29%  Similarity=0.348  Sum_probs=111.4

Q ss_pred             CeEEEEEEehHhh--HHHHHHHHHHHHHHhhcchhhHHH-----------------------------------------
Q 045449          641 GMEVAVKVFHQQY--ERALKSFEDECEVRKRIRHRNLVK-----------------------------------------  677 (823)
Q Consensus       641 ~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~-----------------------------------------  677 (823)
                      +..||+|.+....  ....++..+|..++..+.|+||++                                         
T Consensus        41 ~~~v~ikk~~~pf~n~~~akra~rel~l~~~v~~~nii~l~n~ftP~~~l~~~~e~y~v~e~m~~nl~~vi~~elDH~ti  120 (369)
T KOG0665|consen   41 GRPVAIKKLSRPFQNQTHAKRAYRELKLMKCVNHKNIISLLNVFTPQKTLEEFQEVYLVMELMDANLCQVILMELDHETI  120 (369)
T ss_pred             cCceehhhhcCccccCccchhhhhhhhhhhhhcccceeeeeeccCccccHHHHHhHHHHHHhhhhHHHHHHHHhcchHHH
Confidence            4567777664332  122356677888888888888887                                         


Q ss_pred             --HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccCCCccccc
Q 045449          678 --IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTR  755 (823)
Q Consensus       678 --~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~  755 (823)
                        ++.|.+.+++|+|+.||+|||+||+||++..+..+||.|||+|+.....   ...+..+.|..|+|||++.+..|.+.
T Consensus       121 s~i~yq~~~~ik~lhs~~IihRdLkPsnivv~~~~~lKi~dfg~ar~e~~~---~~mtpyVvtRyyrapevil~~~~ke~  197 (369)
T KOG0665|consen  121 SYILYQMLCGIKHLHSAGIIHRDLKPSNIVVNSDCTLKILDFGLARTEDTD---FMMTPYVVTRYYRAPEVILGMGYKEN  197 (369)
T ss_pred             HHHHHHHHHHHHHHHhcceeecccCcccceecchhheeeccchhhcccCcc---cccCchhheeeccCchheeccCCccc
Confidence              4568899999999999999999999999999999999999999864322   34567889999999999999899999


Q ss_pred             cceehhhhhhccccCCCCCcCC
Q 045449          756 GDVCSFGIISGGKETRSMTVGE  777 (823)
Q Consensus       756 ~Dv~S~Gvv~~~~~~~~~~~~~  777 (823)
                      +||||.||++|||..|...|.+
T Consensus       198 vdiwSvGci~gEli~~~Vlf~g  219 (369)
T KOG0665|consen  198 VDIWSVGCIMGELILGTVLFPG  219 (369)
T ss_pred             chhhhhhhHHHHHhhceEEecC
Confidence            9999999999999999987764

>cd08221 STKc_Nek9 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9

Probab=99.80  E-value=2.3e-20  Score=195.46  Aligned_cols=136  Identities=22%  Similarity=0.296  Sum_probs=114.7

Q ss_pred             CeEEEEEEehHhh--HHHHHHHHHHHHHHhhcchhhHHH-----------------------------------------
Q 045449          641 GMEVAVKVFHQQY--ERALKSFEDECEVRKRIRHRNLVK-----------------------------------------  677 (823)
Q Consensus       641 ~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~-----------------------------------------  677 (823)
                      +..||+|.+....  ....+++.+|++++++++|+||++                                         
T Consensus        25 ~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~~~~e~~~~~~L~~~~~~~~~~~~~~~~~~  104 (256)
T cd08221          25 DSLVVWKEVNLTRLSEKERRDALNEIVILSLLQHPNIIAYYNHFMDDNTLLIEMEYANGGTLYDKIVRQKGQLFEEEMVL  104 (256)
T ss_pred             CcEEEEEEEeecccchhHHHHHHHHHHHHHhCCCCCeeEEEeEEecCCeEEEEEEecCCCcHHHHHHhccccCCCHHHHH
Confidence            5678999876432  445578999999999999999998                                         


Q ss_pred             -HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccCCCcccccc
Q 045449          678 -IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRG  756 (823)
Q Consensus       678 -~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~  756 (823)
                       ++.|++.+|.|+|+.+++||||||+||++++++.+||+|||+++.......  ......|++.|+|||+..+..++.++
T Consensus       105 ~~~~~l~~~l~~lh~~~i~h~dl~p~ni~~~~~~~~kl~d~~~~~~~~~~~~--~~~~~~~~~~y~ape~~~~~~~~~~~  182 (256)
T cd08221         105 WYLFQIVSAVSYIHKAGILHRDIKTLNIFLTKAGLIKLGDFGISKILGSEYS--MAETVVGTPYYMSPELCQGVKYNFKS  182 (256)
T ss_pred             HHHHHHHHHHHHHHhCCccccCCChHhEEEeCCCCEEECcCcceEEcccccc--cccccCCCccccCHhhcCCCCCCCcc
Confidence             245788889999999999999999999999999999999999987644332  22345689999999999888889999


Q ss_pred             ceehhhhhhccccCCCCCcCCC
Q 045449          757 DVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       757 Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      |||||||+++++.+|..||...
T Consensus       183 Dv~slG~i~~~l~~g~~~~~~~  204 (256)
T cd08221         183 DIWALGCVLYELLTLKRTFDAT  204 (256)
T ss_pred             hhHHHHHHHHHHHHCCCCCCCC
Confidence            9999999999999999988653

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associa

>cd05087 PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases 1 and 3

Probab=99.80  E-value=3.5e-20  Score=195.67  Aligned_cols=138  Identities=22%  Similarity=0.264  Sum_probs=110.4

Q ss_pred             CeEEEEEEehHhh-HHHHHHHHHHHHHHhhcchhhHHH------------------------------------------
Q 045449          641 GMEVAVKVFHQQY-ERALKSFEDECEVRKRIRHRNLVK------------------------------------------  677 (823)
Q Consensus       641 ~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~------------------------------------------  677 (823)
                      +..+|+|.++... ......|.+|+.++++++||||++                                          
T Consensus        22 ~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~  101 (269)
T cd05087          22 PAQVVVKELRVSASVQEQMKFLEEAQPYRSLQHSNLLQCLGQCTEVTPYLLVMEFCPLGDLKGYLRSCRKAELMTPDPTT  101 (269)
T ss_pred             ceEEEEEecCCCCChHHHHHHHHHHHHHHhCCCCCEeeEEEEEcCCCCcEEEEECCCCCcHHHHHHHhhhcccccccHHH
Confidence            4568999886543 234457899999999999999998                                          


Q ss_pred             ---HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccCCC----
Q 045449          678 ---IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKG----  750 (823)
Q Consensus       678 ---~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~----  750 (823)
                         ++.|++.+++|+|+.+++||||||+||+++.++.+||+|||+++...............|+..|+|||++.+.    
T Consensus       102 ~~~~~~qi~~al~~lH~~~i~H~dlkp~nil~~~~~~~kL~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~  181 (269)
T cd05087         102 LQRMACEIALGLLHLHKNNFIHSDLALRNCLLTADLTVKIGDYGLSHNKYKEDYYVTPDQLWVPLRWIAPELVDEVHGNL  181 (269)
T ss_pred             HHHHHHHHHHHHHHHHHCCEeccccCcceEEEcCCCcEEECCccccccccCcceeecCCCcCCcccccCHhHhccccccc
Confidence               2357888999999999999999999999999999999999999765433222222334578899999987542    


Q ss_pred             ---ccccccceehhhhhhccccC-CCCCcCCC
Q 045449          751 ---RVSTRGDVCSFGIISGGKET-RSMTVGET  778 (823)
Q Consensus       751 ---~~~~~~Dv~S~Gvv~~~~~~-~~~~~~~~  778 (823)
                         .++.++|||||||+++++++ |..||...
T Consensus       182 ~~~~~~~~~DiwslG~~l~el~~~g~~p~~~~  213 (269)
T cd05087         182 LVVDQTKESNVWSLGVTIWELFELGSQPYRHL  213 (269)
T ss_pred             cccCCCccchhHHHHHHHHHHHhCCCCCCCCC
Confidence               35789999999999999985 99888654

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 1 (Aatyk1) and Aatyk3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk1 and Aatyk3 are members of the Aatyk subfamily of proteins. Aatyk3 is a receptor kinase containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 has a similar domain arrangement but without the transmembrane segment and is thus, a cytoplasmic (or nonreceptor) kinase. The expression of Aatyk1 (also referred simply as Aatyk) is upregulated during growth arrest and apoptosis in myeloid cells

>cd05050 PTKc_Musk Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase

Probab=99.80  E-value=2.3e-20  Score=199.15  Aligned_cols=138  Identities=24%  Similarity=0.320  Sum_probs=111.1

Q ss_pred             CeEEEEEEehHhh-HHHHHHHHHHHHHHhhcchhhHHH------------------------------------------
Q 045449          641 GMEVAVKVFHQQY-ERALKSFEDECEVRKRIRHRNLVK------------------------------------------  677 (823)
Q Consensus       641 ~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~------------------------------------------  677 (823)
                      +..||+|++.... ....++|.+|+++++++.||||++                                          
T Consensus        35 ~~~~aiK~~~~~~~~~~~~~~~~ei~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~  114 (288)
T cd05050          35 FTMVAVKMLKEEASADMQADFQREAALMAEFDHPNIVKLLGVCAVGKPMCLLFEYMAYGDLNEFLRHRSPRAQCSLSHST  114 (288)
T ss_pred             ceeEEEEecCCCcCHHHHHHHHHHHHHHHhcCCCchheEEEEEcCCCccEEEEecCCCCCHHHHHHHcCccccccccccc
Confidence            4678999987543 344578999999999999999986                                          


Q ss_pred             --------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCcccccccccc
Q 045449          678 --------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLA  737 (823)
Q Consensus       678 --------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~g  737 (823)
                                          ++.|++.+|.|+|+.+++||||||+||++++++.+||+|||+++...............+
T Consensus       115 ~~~~~~~~~~~~l~~~~~~~~~~~i~~aL~~lH~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~  194 (288)
T cd05050         115 SSARKCGLNPLPLSCTEQLCIAKQVAAGMAYLSERKFVHRDLATRNCLVGENMVVKIADFGLSRNIYSADYYKASENDAI  194 (288)
T ss_pred             cccccccccccccCHHHHHHHHHHHHHHHHHHHhCCeecccccHhheEecCCCceEECccccceecccCccccccCCCcc
Confidence                                234667789999999999999999999999999999999999886543322212223345


Q ss_pred             CCCcCcccccCCCccccccceehhhhhhccccC-CCCCcCCC
Q 045449          738 TIGYMAPEYGTKGRVSTRGDVCSFGIISGGKET-RSMTVGET  778 (823)
Q Consensus       738 t~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~-~~~~~~~~  778 (823)
                      +..|+|||++.+..++.++|||||||++|++.+ +..||.+.
T Consensus       195 ~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~~~~~p~~~~  236 (288)
T cd05050         195 PIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGMQPYYGM  236 (288)
T ss_pred             ChhhcCHHHHhcCCCCchhHHHHHHHHHHHHHhCCCCCCCCC
Confidence            678999999988899999999999999999986 77777543

Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates M

>cd05085 PTKc_Fer Catalytic domain of the Protein Tyrosine Kinase, Fer

Probab=99.80  E-value=3.5e-20  Score=193.31  Aligned_cols=137  Identities=28%  Similarity=0.308  Sum_probs=111.5

Q ss_pred             CeEEEEEEehHhh-HHHHHHHHHHHHHHhhcchhhHHH-----------------------------------------H
Q 045449          641 GMEVAVKVFHQQY-ERALKSFEDECEVRKRIRHRNLVK-----------------------------------------I  678 (823)
Q Consensus       641 ~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~-----------------------------------------~  678 (823)
                      +..||+|++.... ......|.+|++++++++||||++                                         +
T Consensus        19 ~~~~a~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~   98 (250)
T cd05085          19 KTPVAVKTCKEDLPQELKIKFLSEARILKQYDHPNIVKLIGVCTQRQPIYIVMELVPGGDFLSFLRKKKDELKTKQLVKF   98 (250)
T ss_pred             CcEEEEEecCCcCCHHHHHHHHHHHHHHHhCCCCCcCeEEEEEecCCccEEEEECCCCCcHHHHHHhcCCCCCHHHHHHH
Confidence            4679999987543 334457999999999999999998                                         2


Q ss_pred             HHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccCCCccccccce
Q 045449          679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDV  758 (823)
Q Consensus       679 ~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv  758 (823)
                      +.+++.+|.|+|+.+++|||+||+||+++.++.+||+|||+++....... .......++..|+|||+...+.++.++||
T Consensus        99 ~~~i~~~l~~lH~~~~~H~dl~p~nili~~~~~~~l~d~g~~~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~Di  177 (250)
T cd05085          99 ALDAAAGMAYLESKNCIHRDLAARNCLVGENNVLKISDFGMSRQEDDGIY-SSSGLKQIPIKWTAPEALNYGRYSSESDV  177 (250)
T ss_pred             HHHHHHHHHHHHhCCeeecccChheEEEcCCCeEEECCCccceecccccc-ccCCCCCCcccccCHHHhccCCCCchhHH
Confidence            46778889999999999999999999999999999999999976432211 11112234678999999988889999999


Q ss_pred             ehhhhhhccccC-CCCCcCCC
Q 045449          759 CSFGIISGGKET-RSMTVGET  778 (823)
Q Consensus       759 ~S~Gvv~~~~~~-~~~~~~~~  778 (823)
                      |||||+++++.+ |..||.+.
T Consensus       178 ~slG~ll~~~~~~g~~p~~~~  198 (250)
T cd05085         178 WSYGILLWETFSLGVCPYPGM  198 (250)
T ss_pred             HHHHHHHHHHhcCCCCCCCCC
Confidence            999999999988 88888654

Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-c

>cd05056 PTKc_FAK Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase

Probab=99.80  E-value=3.7e-20  Score=195.62  Aligned_cols=137  Identities=23%  Similarity=0.279  Sum_probs=113.0

Q ss_pred             eEEEEEEehHhh-HHHHHHHHHHHHHHhhcchhhHHH----------------------------------------HHH
Q 045449          642 MEVAVKVFHQQY-ERALKSFEDECEVRKRIRHRNLVK----------------------------------------IIS  680 (823)
Q Consensus       642 ~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~----------------------------------------~~~  680 (823)
                      ..||||...... ....+.|.+|+.++++++||||++                                        ++.
T Consensus        35 ~~v~ik~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~  114 (270)
T cd05056          35 IAVAVKTCKNCTSPSVREKFLQEAYIMRQFDHPHIVKLIGVITENPVWIVMELAPLGELRSYLQVNKYSLDLASLILYSY  114 (270)
T ss_pred             cceEEEecCCcCCHHHHHHHHHHHHHHHhCCCCchhceeEEEcCCCcEEEEEcCCCCcHHHHHHhCCCCCCHHHHHHHHH
Confidence            358999887554 455678999999999999999998                                        246


Q ss_pred             HHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccCCCccccccceeh
Q 045449          681 SSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCS  760 (823)
Q Consensus       681 ~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S  760 (823)
                      +++.+|.|+|+.+++||||||+||+++.++.+|++|||+++......... .....++..|+|||++....++.++||||
T Consensus       115 ~l~~~l~~lH~~~~~H~dl~p~nili~~~~~~~l~d~g~~~~~~~~~~~~-~~~~~~~~~y~aPE~~~~~~~~~~~Di~s  193 (270)
T cd05056         115 QLSTALAYLESKRFVHRDIAARNVLVSSPDCVKLGDFGLSRYLEDESYYK-ASKGKLPIKWMAPESINFRRFTSASDVWM  193 (270)
T ss_pred             HHHHHHHHHHhCCeeccccChheEEEecCCCeEEccCceeeeccccccee-cCCCCccccccChhhhccCCCCchhhhHH
Confidence            88889999999999999999999999999999999999998765432211 12234557899999998888999999999


Q ss_pred             hhhhhccccC-CCCCcCCCc
Q 045449          761 FGIISGGKET-RSMTVGETC  779 (823)
Q Consensus       761 ~Gvv~~~~~~-~~~~~~~~~  779 (823)
                      |||+++++++ |..||....
T Consensus       194 lG~il~el~~~g~~pf~~~~  213 (270)
T cd05056         194 FGVCMWEILMLGVKPFQGVK  213 (270)
T ss_pred             HHHHHHHHHHcCCCCCCCCC
Confidence            9999999885 888886653

Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions

>cd05063 PTKc_EphR_A2 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2

Probab=99.80  E-value=2.4e-20  Score=196.73  Aligned_cols=151  Identities=21%  Similarity=0.413  Sum_probs=118.8

Q ss_pred             ccCCccceeeccC---------------CeEEEEEEehHhh-HHHHHHHHHHHHHHhhcchhhHHH--------------
Q 045449          628 DRFSENNLIGIGN---------------GMEVAVKVFHQQY-ERALKSFEDECEVRKRIRHRNLVK--------------  677 (823)
Q Consensus       628 ~~f~~~~~lg~g~---------------~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~--------------  677 (823)
                      ++|...+.+|+|+               ...||||.+.... ....++|..|++++++++|+|+++              
T Consensus         5 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv   84 (268)
T cd05063           5 SHITKQKVIGAGEFGEVFRGILKMPGRKEVAVAIKTLKPGYTEKQRQDFLSEASIMGQFSHHNIIRLEGVVTKFKPAMII   84 (268)
T ss_pred             HHceEeeEecCCCCccEEEEEEecCCCCceEEEEEeccccCCHHHHHHHHHHHHHHhcCCCCCeeEEEEEEccCCCcEEE
Confidence            3556666777664               1258999886543 344578999999999999999988              


Q ss_pred             ---------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccc
Q 045449          678 ---------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLS  730 (823)
Q Consensus       678 ---------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~  730 (823)
                                                 ++.+++.+++|+|+.+++|||+||+||+++.++.+|++|||+++.........
T Consensus        85 ~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH~~~i~H~dlkp~Nili~~~~~~kl~dfg~~~~~~~~~~~~  164 (268)
T cd05063          85 TEYMENGALDKYLRDHDGEFSSYQLVGMLRGIAAGMKYLSDMNYVHRDLAARNILVNSNLECKVSDFGLSRVLEDDPEGT  164 (268)
T ss_pred             EEcCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCeeccccchhhEEEcCCCcEEECCCccceecccccccc
Confidence                                       35678889999999999999999999999999999999999998764332211


Q ss_pred             c-ccccccCCCcCcccccCCCccccccceehhhhhhccccC-CCCCcCCC
Q 045449          731 K-QTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKET-RSMTVGET  778 (823)
Q Consensus       731 ~-~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~-~~~~~~~~  778 (823)
                      . ......+..|+|||++....++.++|||||||++|++++ |..||...
T Consensus       165 ~~~~~~~~~~~y~~PE~~~~~~~~~~~Dv~slG~il~ell~~g~~p~~~~  214 (268)
T cd05063         165 YTTSGGKIPIRWTAPEAIAYRKFTSASDVWSFGIVMWEVMSFGERPYWDM  214 (268)
T ss_pred             eeccCCCcCceecCHHHhhcCCcChHhHHHHHHHHHHHHHhCCCCCCCcC
Confidence            1 111223567999999988889999999999999999886 89898553

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored

>cd06642 STKc_STK25-YSK1 Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1

Probab=99.80  E-value=2.9e-20  Score=197.18  Aligned_cols=137  Identities=26%  Similarity=0.330  Sum_probs=115.6

Q ss_pred             CCeEEEEEEehHhh-HHHHHHHHHHHHHHhhcchhhHHH---------------------------------------HH
Q 045449          640 NGMEVAVKVFHQQY-ERALKSFEDECEVRKRIRHRNLVK---------------------------------------II  679 (823)
Q Consensus       640 ~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~---------------------------------------~~  679 (823)
                      .+..||+|.+.... ....+.+.+|++++++++||||++                                       ++
T Consensus        28 ~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~  107 (277)
T cd06642          28 TKEVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYITRYYGSYLKGTKLWIIMEYLGGGSALDLLKPGPLEETYIATIL  107 (277)
T ss_pred             CCeEEEEEEeccccchHHHHHHHHHHHHHHcCCCCccHhhhcccccCCceEEEEEccCCCcHHHHhhcCCCCHHHHHHHH
Confidence            35789999987433 344578999999999999999999                                       24


Q ss_pred             HHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccCCCcccccccee
Q 045449          680 SSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVC  759 (823)
Q Consensus       680 ~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~  759 (823)
                      .++++++.|+|+.+++|+||+|+||+++.++.+|++|||+++.......  ......|+..|+|||++.+..++.++|||
T Consensus       108 ~~i~~~l~~lH~~~ivH~dl~p~ni~i~~~~~~~l~dfg~~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~  185 (277)
T cd06642         108 REILKGLDYLHSERKIHRDIKAANVLLSEQGDVKLADFGVAGQLTDTQI--KRNTFVGTPFWMAPEVIKQSAYDFKADIW  185 (277)
T ss_pred             HHHHHHHHHHhcCCeeccCCChheEEEeCCCCEEEccccccccccCcch--hhhcccCcccccCHHHhCcCCCchhhhHH
Confidence            6788899999999999999999999999999999999999987643221  12234688999999999988899999999


Q ss_pred             hhhhhhccccCCCCCcCCC
Q 045449          760 SFGIISGGKETRSMTVGET  778 (823)
Q Consensus       760 S~Gvv~~~~~~~~~~~~~~  778 (823)
                      ||||+++++.+|..|+.+.
T Consensus       186 slG~il~el~tg~~p~~~~  204 (277)
T cd06642         186 SLGITAIELAKGEPPNSDL  204 (277)
T ss_pred             HHHHHHHHHHhCCCCCccc
Confidence            9999999999999998654

Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25

>cd06626 STKc_MEKK4 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

Probab=99.80  E-value=4e-20  Score=194.44  Aligned_cols=138  Identities=33%  Similarity=0.414  Sum_probs=115.5

Q ss_pred             CeEEEEEEehHhhH--HHHHHHHHHHHHHhhcchhhHHH----------------------------------------H
Q 045449          641 GMEVAVKVFHQQYE--RALKSFEDECEVRKRIRHRNLVK----------------------------------------I  678 (823)
Q Consensus       641 ~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~niv~----------------------------------------~  678 (823)
                      +..||+|++.....  ...+.+.+|++++++++|+||++                                        +
T Consensus        25 ~~~~~ik~~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~i  104 (264)
T cd06626          25 GELMAVKEIRIQDNDPKTIKEIADEMKVLELLKHPNLVKYYGVEVHREKVYIFMEYCSGGTLEELLEHGRILDEHVIRVY  104 (264)
T ss_pred             CcEEEEEEEECcccchHHHHHHHHHHHHHHhCCCCChhheeeeEecCCEEEEEEecCCCCcHHHHHhhcCCCChHHHHHH
Confidence            56799999875443  46688999999999999999998                                        3


Q ss_pred             HHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCcccc--ccccccCCCcCcccccCCCc---cc
Q 045449          679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSK--QTQTLATIGYMAPEYGTKGR---VS  753 (823)
Q Consensus       679 ~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~--~~~~~gt~~y~aPE~~~~~~---~~  753 (823)
                      +.+++.+|.|+|+.+|+||||||+||++++++.+||+|||++...........  .....+++.|+|||++.+..   ++
T Consensus       105 ~~~i~~~l~~lh~~~i~H~dl~~~nil~~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~~~~~PE~~~~~~~~~~~  184 (264)
T cd06626         105 TLQLLEGLAYLHSHGIVHRDIKPANIFLDHNGVIKLGDFGCAVKLKNNTTTMGEEVQSLAGTPAYMAPEVITGGKGKGHG  184 (264)
T ss_pred             HHHHHHHHHHHHHCCcccCCCCHHHEEECCCCCEEEcccccccccCCCCCcccccccCCcCCcCccChhhccCCCCCCCC
Confidence            56888899999999999999999999999999999999999987654332111  11346789999999988766   88


Q ss_pred             cccceehhhhhhccccCCCCCcCCC
Q 045449          754 TRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       754 ~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      .++|||||||+++++++|..||.+.
T Consensus       185 ~~~Dv~s~G~il~~l~~g~~pf~~~  209 (264)
T cd06626         185 RAADIWSLGCVVLEMATGKRPWSEL  209 (264)
T ss_pred             cccchHHHHHHHHHHHhCCCCccCC
Confidence            9999999999999999999999754

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4

>KOG0199 consensus ACK and related non-receptor tyrosine kinases [Signal transduction mechanisms]

Probab=99.80  E-value=1.3e-20  Score=204.08  Aligned_cols=137  Identities=21%  Similarity=0.286  Sum_probs=116.7

Q ss_pred             EEEEEEehHhhHH-HHHHHHHHHHHHhhcchhhHHH-----------------------------------------HHH
Q 045449          643 EVAVKVFHQQYER-ALKSFEDECEVRKRIRHRNLVK-----------------------------------------IIS  680 (823)
Q Consensus       643 ~vavK~~~~~~~~-~~~~~~~E~~~l~~l~h~niv~-----------------------------------------~~~  680 (823)
                      .||||+++..... ...+|.+|+.+|.+|+|||+++                                         ++.
T Consensus       140 ~VAVKclr~d~l~~~mddflrEas~M~~L~H~hliRLyGvVl~qp~mMV~ELaplGSLldrLrka~~~~llv~~Lcdya~  219 (1039)
T KOG0199|consen  140 NVAVKCLRDDSLNAIMDDFLREASHMLKLQHPHLIRLYGVVLDQPAMMVFELAPLGSLLDRLRKAKKAILLVSRLCDYAM  219 (1039)
T ss_pred             eEEEEeccCCccchhHHHHHHHHHHHHhccCcceeEEeeeeccchhhHHhhhcccchHHHHHhhccccceeHHHHHHHHH
Confidence            4999999876643 5689999999999999999998                                         346


Q ss_pred             HHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCcccccc-ccccCCCcCcccccCCCcccccccee
Q 045449          681 SSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQT-QTLATIGYMAPEYGTKGRVSTRGDVC  759 (823)
Q Consensus       681 ~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~-~~~gt~~y~aPE~~~~~~~~~~~Dv~  759 (823)
                      |++.+|.|+..++.||||+-..|+|+...-.+||+|||+.|-+...+.+..+. ...-...|.|||.+....++.++|||
T Consensus       220 QiA~aM~YLeskrlvHRDLAARNlllasprtVKI~DFGLmRaLg~ned~Yvm~p~rkvPfAWCaPEsLrh~kFShaSDvW  299 (1039)
T KOG0199|consen  220 QIAKAMQYLESKRLVHRDLAARNLLLASPRTVKICDFGLMRALGENEDMYVMAPQRKVPFAWCAPESLRHRKFSHASDVW  299 (1039)
T ss_pred             HHHHHHHHHhhhhhhhhhhhhhhheecccceeeeecccceeccCCCCcceEecCCCcCcccccCHhHhccccccccchhh
Confidence            88888999999999999999999999988899999999999887665543332 23346789999999999999999999


Q ss_pred             hhhhhhccccC-CCCCcCCCc
Q 045449          760 SFGIISGGKET-RSMTVGETC  779 (823)
Q Consensus       760 S~Gvv~~~~~~-~~~~~~~~~  779 (823)
                      +|||.+|||++ |++||.+..
T Consensus       300 myGVTiWEMFtyGEePW~G~~  320 (1039)
T KOG0199|consen  300 MYGVTIWEMFTYGEEPWVGCR  320 (1039)
T ss_pred             hhhhhHHhhhccCCCCCCCCC
Confidence            99999999976 678887754

>cd05073 PTKc_Hck Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase

Probab=99.80  E-value=3.9e-20  Score=194.25  Aligned_cols=149  Identities=27%  Similarity=0.409  Sum_probs=120.3

Q ss_pred             ccCCccceeeccC-----------CeEEEEEEehHhhHHHHHHHHHHHHHHhhcchhhHHH-------------------
Q 045449          628 DRFSENNLIGIGN-----------GMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVK-------------------  677 (823)
Q Consensus       628 ~~f~~~~~lg~g~-----------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~-------------------  677 (823)
                      ++|...+.+|+|+           +..||+|.+.... ...+.|.+|++++++++|+||++                   
T Consensus         6 ~~~~~~~~lg~g~~~~vy~~~~~~~~~~~iK~~~~~~-~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~v~e~~~~   84 (260)
T cd05073           6 ESLKLEKKLGAGQFGEVWMATYNKHTKVAVKTMKPGS-MSVEAFLAEANVMKTLQHDKLVKLHAVVTKEPIYIITEFMAK   84 (260)
T ss_pred             cceeEEeEecCccceEEEEEEecCCccEEEEecCCCh-hHHHHHHHHHHHHHhcCCCCcceEEEEEcCCCeEEEEEeCCC
Confidence            4556666777664           3458899886543 34578999999999999999998                   


Q ss_pred             ----------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCcccccccc
Q 045449          678 ----------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQT  735 (823)
Q Consensus       678 ----------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~  735 (823)
                                            ++.|++.+|+++|+.+++||||||+||+++.++.+||+|||.++....... ......
T Consensus        85 ~~L~~~~~~~~~~~~~~~~~~~~~~~l~~aL~~lH~~~i~H~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~-~~~~~~  163 (260)
T cd05073          85 GSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIEQRNYIHRDLRAANILVSASLVCKIADFGLARVIEDNEY-TAREGA  163 (260)
T ss_pred             CcHHHHHHhCCccccCHHHHHHHHHHHHHHHHHHHhCCccccccCcceEEEcCCCcEEECCCcceeeccCCCc-ccccCC
Confidence                                  246888999999999999999999999999999999999999986543222 112233


Q ss_pred             ccCCCcCcccccCCCccccccceehhhhhhccccC-CCCCcCCC
Q 045449          736 LATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKET-RSMTVGET  778 (823)
Q Consensus       736 ~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~-~~~~~~~~  778 (823)
                      .++..|+|||++..+.++.++|||||||+++++++ |..||.+.
T Consensus       164 ~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~~l~t~g~~p~~~~  207 (260)
T cd05073         164 KFPIKWTAPEAINFGSFTIKSDVWSFGILLMEIVTYGRIPYPGM  207 (260)
T ss_pred             cccccccCHhHhccCCcCccccchHHHHHHHHHHhcCCCCCCCC
Confidence            46678999999988889999999999999999998 88888654

Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pa

>cd05039 PTKc_Csk_like Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

Probab=99.80  E-value=3.2e-20  Score=194.37  Aligned_cols=144  Identities=32%  Similarity=0.431  Sum_probs=118.9

Q ss_pred             cCCccceeeccC----------CeEEEEEEehHhhHHHHHHHHHHHHHHhhcchhhHHH---------------------
Q 045449          629 RFSENNLIGIGN----------GMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVK---------------------  677 (823)
Q Consensus       629 ~f~~~~~lg~g~----------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~---------------------  677 (823)
                      +|...+.+|.|+          ++.||||.+..... ..+++.+|+.++++++|+||++                     
T Consensus         7 ~~~~~~~ig~g~~g~v~~~~~~~~~v~iK~~~~~~~-~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~~~~   85 (256)
T cd05039           7 ELKLGATIGKGEFGDVMLGDYRGQKVAVKCLKDDST-AAQAFLAEASVMTTLRHPNLVQLLGVVLQGNPLYIVTEYMAKG   85 (256)
T ss_pred             hccceeeeecCCCceEEEEEecCcEEEEEEeccchh-HHHHHHHHHHHHHhcCCcceeeeEEEEcCCCCeEEEEEecCCC
Confidence            444555666553          67799999976654 5678999999999999999998                     


Q ss_pred             ---------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccc
Q 045449          678 ---------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTL  736 (823)
Q Consensus       678 ---------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~  736 (823)
                                           ++.|++.+|.|+|+.+++||||||+||+++.++.+||+|||.++.......     ...
T Consensus        86 ~L~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh~~~i~H~di~p~Nili~~~~~~~l~d~g~~~~~~~~~~-----~~~  160 (256)
T cd05039          86 SLVDYLRSRGRAVITLAQQLGFALDVCEGMEYLEEKNFVHRDLAARNVLVSEDLVAKVSDFGLAKEASQGQD-----SGK  160 (256)
T ss_pred             cHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCccchhcccceEEEeCCCCEEEcccccccccccccc-----cCC
Confidence                                 246788889999999999999999999999999999999999987632221     233


Q ss_pred             cCCCcCcccccCCCccccccceehhhhhhccccC-CCCCcCCC
Q 045449          737 ATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKET-RSMTVGET  778 (823)
Q Consensus       737 gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~-~~~~~~~~  778 (823)
                      ++..|+|||++..+.++.++|||||||+++++.+ |..||...
T Consensus       161 ~~~~~~ape~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~  203 (256)
T cd05039         161 LPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRI  203 (256)
T ss_pred             CcccccCchhhcCCcCCcHHHHHHHHHHHHHHHhcCCCCCCCC
Confidence            5678999999988889999999999999999986 88887654

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk

>cd05059 PTKc_Tec_like Catalytic domain of Tec-like Protein Tyrosine Kinases

Probab=99.80  E-value=1.4e-20  Score=197.30  Aligned_cols=135  Identities=28%  Similarity=0.409  Sum_probs=109.3

Q ss_pred             eEEEEEEehHhhHHHHHHHHHHHHHHhhcchhhHHH-----------------------------------------HHH
Q 045449          642 MEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVK-----------------------------------------IIS  680 (823)
Q Consensus       642 ~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~-----------------------------------------~~~  680 (823)
                      ..+|+|++..... ...+|.+|++++++++|+||++                                         ++.
T Consensus        29 ~~~~iK~~~~~~~-~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~  107 (256)
T cd05059          29 IDVAIKMIREGAM-SEDDFIEEAKVMMKLSHPNLVQLYGVCTKQRPIFIVTEYMANGCLLNYLRERKGKLGTEWLLDMCS  107 (256)
T ss_pred             ccEEEEEeccCCC-CHHHHHHHHHHHHhCCCCCEEEEEEEEcCCCceEEEEecCCCCCHHHHHHhcccCCCHHHHHHHHH
Confidence            4689998864322 2357889999999999999997                                         356


Q ss_pred             HHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccCCCccccccceeh
Q 045449          681 SSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCS  760 (823)
Q Consensus       681 ~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S  760 (823)
                      |++.+|+|+|+.+++||||||+||+++.++.+|++|||+++....... .......++..|+|||+..+..++.++||||
T Consensus       108 qi~~~l~~lH~~~i~H~dl~p~ni~i~~~~~~kl~dfg~~~~~~~~~~-~~~~~~~~~~~y~~Pe~~~~~~~~~~~Di~s  186 (256)
T cd05059         108 DVCEAMEYLESNGFIHRDLAARNCLVGEDNVVKVSDFGLARYVLDDQY-TSSQGTKFPVKWAPPEVFDYSRFSSKSDVWS  186 (256)
T ss_pred             HHHHHHHHHHHCCcccccccHhhEEECCCCcEEECCcccceecccccc-cccCCCCCCccccCHHHhccCCCCchhhHHH
Confidence            788899999999999999999999999999999999999986543221 1111223456899999999889999999999


Q ss_pred             hhhhhccccC-CCCCcCCC
Q 045449          761 FGIISGGKET-RSMTVGET  778 (823)
Q Consensus       761 ~Gvv~~~~~~-~~~~~~~~  778 (823)
                      |||++|++++ |..||...
T Consensus       187 lG~il~~l~~~g~~p~~~~  205 (256)
T cd05059         187 FGVLMWEVFSEGKMPYERF  205 (256)
T ss_pred             HHHHHHHHhccCCCCCCCC
Confidence            9999999998 78888653

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows

>cd06615 PKc_MEK Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase

Probab=99.80  E-value=5e-20  Score=198.59  Aligned_cols=145  Identities=23%  Similarity=0.320  Sum_probs=119.1

Q ss_pred             cCCccceeeccC------------CeEEEEEEehHhh-HHHHHHHHHHHHHHhhcchhhHHH------------------
Q 045449          629 RFSENNLIGIGN------------GMEVAVKVFHQQY-ERALKSFEDECEVRKRIRHRNLVK------------------  677 (823)
Q Consensus       629 ~f~~~~~lg~g~------------~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~------------------  677 (823)
                      +|...+.+|.|+            +..||+|.+.... ....+++.+|++++.+++||||++                  
T Consensus         2 ~~~~~~~lg~G~~g~v~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~ey~   81 (308)
T cd06615           2 DFEKLGELGAGNGGVVTKVLHRPSGLIMARKLIHLEIKPAIRNQIIRELKVLHECNSPYIVGFYGAFYSDGEISICMEHM   81 (308)
T ss_pred             CceEEeeccCCCCeEEEEEEEcCCCeEEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCEEEEEeecc
Confidence            456666666664            5668999886442 344567899999999999999998                  


Q ss_pred             ----------------------HHHHHHHHhhhcCC-CCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccc
Q 045449          678 ----------------------IISSSLEYLHFGHS-IPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQ  734 (823)
Q Consensus       678 ----------------------~~~~~l~~L~~~h~-~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~  734 (823)
                                            ++.|++++|.|+|+ .+++||||||+||+++.++.+||+|||+++......    ...
T Consensus        82 ~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~----~~~  157 (308)
T cd06615          82 DGGSLDQVLKKAGRIPENILGKISIAVLRGLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSM----ANS  157 (308)
T ss_pred             CCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhCCEEECCCChHHEEEecCCcEEEccCCCcccccccc----ccc
Confidence                                  35678888999997 699999999999999999999999999987653221    234


Q ss_pred             cccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCC
Q 045449          735 TLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGE  777 (823)
Q Consensus       735 ~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~  777 (823)
                      ..|++.|+|||+..+..++.++|||||||+++++++|..||..
T Consensus       158 ~~~~~~~~aPE~~~~~~~~~~~DiwslG~~l~~l~~g~~p~~~  200 (308)
T cd06615         158 FVGTRSYMSPERLQGTHYTVQSDIWSLGLSLVEMAIGRYPIPP  200 (308)
T ss_pred             CCCCcCccChhHhcCCCCCccchHHHHHHHHHHHHhCCCCCCC
Confidence            5789999999998888899999999999999999999998753

Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the down

>cd07839 STKc_CDK5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5

Probab=99.80  E-value=1.7e-20  Score=199.67  Aligned_cols=134  Identities=26%  Similarity=0.303  Sum_probs=109.9

Q ss_pred             CeEEEEEEehHhh--HHHHHHHHHHHHHHhhcchhhHHH----------------------------------------H
Q 045449          641 GMEVAVKVFHQQY--ERALKSFEDECEVRKRIRHRNLVK----------------------------------------I  678 (823)
Q Consensus       641 ~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~----------------------------------------~  678 (823)
                      |..||+|++....  ......+.+|++++++++|+||++                                        +
T Consensus        25 g~~~~~k~~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~  104 (284)
T cd07839          25 HEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLYDVLHSDKKLTLVFEYCDQDLKKYFDSCNGDIDPEIVKSF  104 (284)
T ss_pred             CcEEEEEEeecccccccCccchhHHHHHHHhcCCCCeeeHHHHhccCCceEEEEecCCCCHHHHHHhcCCCCCHHHHHHH
Confidence            5679999886432  223356788999999999999997                                        3


Q ss_pred             HHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccCCCc-cccccc
Q 045449          679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGR-VSTRGD  757 (823)
Q Consensus       679 ~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~-~~~~~D  757 (823)
                      +.|++++|.|+|+.+++||||||+||+++.++.+||+|||+++.......  ......+++.|+|||++.+.. ++.++|
T Consensus       105 ~~qi~~al~~LH~~~i~H~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~~D  182 (284)
T cd07839         105 MFQLLKGLAFCHSHNVLHRDLKPQNLLINKNGELKLADFGLARAFGIPVR--CYSAEVVTLWYRPPDVLFGAKLYSTSID  182 (284)
T ss_pred             HHHHHHHHHHHHHCCEecCCCCHHHEEEcCCCcEEECccchhhccCCCCC--CcCCCccccCCcChHHHhCCcccCcHHH
Confidence            56889999999999999999999999999999999999999986543221  123346789999999876644 789999


Q ss_pred             eehhhhhhccccCCCCCcC
Q 045449          758 VCSFGIISGGKETRSMTVG  776 (823)
Q Consensus       758 v~S~Gvv~~~~~~~~~~~~  776 (823)
                      |||+||+++++++|..|+.
T Consensus       183 iwslG~il~~l~tg~~p~~  201 (284)
T cd07839         183 MWSAGCIFAELANAGRPLF  201 (284)
T ss_pred             HHHHHHHHHHHHhcCCCCc
Confidence            9999999999999988864

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also

>cd05088 PTKc_Tie2 Catalytic domain of the Protein Tyrosine Kinase, Tie2

Probab=99.80  E-value=3.1e-20  Score=199.73  Aligned_cols=148  Identities=25%  Similarity=0.356  Sum_probs=115.0

Q ss_pred             ccCCccceeeccC------------C--eEEEEEEehHhh-HHHHHHHHHHHHHHhhc-chhhHHHH-------------
Q 045449          628 DRFSENNLIGIGN------------G--MEVAVKVFHQQY-ERALKSFEDECEVRKRI-RHRNLVKI-------------  678 (823)
Q Consensus       628 ~~f~~~~~lg~g~------------~--~~vavK~~~~~~-~~~~~~~~~E~~~l~~l-~h~niv~~-------------  678 (823)
                      ++|+..+.+|.|+            +  ..+|+|.+.... ....+.|.+|++++.++ +|+||+++             
T Consensus         7 ~~~~~~~~lg~G~~g~V~~a~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~Ei~~l~~l~~h~~iv~~~~~~~~~~~~~lv   86 (303)
T cd05088           7 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLA   86 (303)
T ss_pred             hhceeeeeecCCCCceEEEEEEccCCceeeEEEEEecccCCHHHHHHHHHHHHHHHHhcCCCCcceEEEEECCCCCceEE
Confidence            3455566677664            1  246777776432 34557899999999999 89999871             


Q ss_pred             -------------------------------------------HHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEe
Q 045449          679 -------------------------------------------ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHIS  715 (823)
Q Consensus       679 -------------------------------------------~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~  715 (823)
                                                                 +.|+++++.|+|+.+++||||||+|||++.++.+||+
T Consensus        87 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH~~gi~H~dlkp~Nili~~~~~~kl~  166 (303)
T cd05088          87 IEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQKQFIHRDLAARNILVGENYVAKIA  166 (303)
T ss_pred             EEeCCCCcHHHHHHhcccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHhCCccccccchheEEecCCCcEEeC
Confidence                                                       2467888999999999999999999999999999999


Q ss_pred             ecccccccCCCCccccccccccCCCcCcccccCCCccccccceehhhhhhccccC-CCCCcCCC
Q 045449          716 DFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKET-RSMTVGET  778 (823)
Q Consensus       716 DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~-~~~~~~~~  778 (823)
                      |||+++.....   .......++..|+|||++.+..++.++|||||||+++++++ |..||...
T Consensus       167 dfg~~~~~~~~---~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~  227 (303)
T cd05088         167 DFGLSRGQEVY---VKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGM  227 (303)
T ss_pred             ccccCcccchh---hhcccCCCcccccCHHHHhccCCcccccchhhhhHHHHHHhcCCCCcccC
Confidence            99998743211   11112234678999999988889999999999999999997 88888643

Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of A

>cd05066 PTKc_EphR_A Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors

Probab=99.80  E-value=3.6e-20  Score=195.40  Aligned_cols=137  Identities=22%  Similarity=0.408  Sum_probs=111.2

Q ss_pred             eEEEEEEehHhh-HHHHHHHHHHHHHHhhcchhhHHH-----------------------------------------HH
Q 045449          642 MEVAVKVFHQQY-ERALKSFEDECEVRKRIRHRNLVK-----------------------------------------II  679 (823)
Q Consensus       642 ~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~-----------------------------------------~~  679 (823)
                      ..||+|.++... ....+.|.+|+.++.+++||||++                                         ++
T Consensus        33 ~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~i~  112 (267)
T cd05066          33 IPVAIKTLKAGYTEKQRRDFLSEASIMGQFDHPNIIHLEGVVTKSKPVMIVTEYMENGSLDAFLRKHDGQFTVIQLVGML  112 (267)
T ss_pred             eEEEEEECCCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEecCCccEEEEEcCCCCCHHHHHHhcCCCCCHHHHHHHH
Confidence            368999886543 344578999999999999999998                                         24


Q ss_pred             HHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccc-cccccccCCCcCcccccCCCccccccce
Q 045449          680 SSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLS-KQTQTLATIGYMAPEYGTKGRVSTRGDV  758 (823)
Q Consensus       680 ~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~Dv  758 (823)
                      .|++.++.++|+.+++||||||+||+++.++.+|++|||+++......... ......++..|+|||++.+..++.++||
T Consensus       113 ~~i~~~l~~lH~~~i~h~dlkp~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~~pe~~~~~~~~~~~Dv  192 (267)
T cd05066         113 RGIASGMKYLSDMGYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKIPIRWTAPEAIAYRKFTSASDV  192 (267)
T ss_pred             HHHHHHHHHHHHCCEeehhhchhcEEECCCCeEEeCCCCcccccccccceeeecCCCccceeecCHhHhccCccCchhhh
Confidence            678889999999999999999999999999999999999998764332211 1112234568999999998889999999


Q ss_pred             ehhhhhhccccC-CCCCcCCC
Q 045449          759 CSFGIISGGKET-RSMTVGET  778 (823)
Q Consensus       759 ~S~Gvv~~~~~~-~~~~~~~~  778 (823)
                      |||||+++++++ |..||.+.
T Consensus       193 ~slG~~l~ell~~g~~p~~~~  213 (267)
T cd05066         193 WSYGIVMWEVMSYGERPYWEM  213 (267)
T ss_pred             HHHHHHHHHHhcCCCCCcccC
Confidence            999999999775 99888654

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellul

>cd06638 STKc_myosinIIIA Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin

Probab=99.80  E-value=2.5e-20  Score=198.71  Aligned_cols=158  Identities=26%  Similarity=0.352  Sum_probs=127.0

Q ss_pred             cCHHHHHHHhccCCccceeeccC------------CeEEEEEEehHhhHHHHHHHHHHHHHHhhc-chhhHHH-------
Q 045449          618 FSYHELLRATDRFSENNLIGIGN------------GMEVAVKVFHQQYERALKSFEDECEVRKRI-RHRNLVK-------  677 (823)
Q Consensus       618 ~~~~~l~~at~~f~~~~~lg~g~------------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~-------  677 (823)
                      +.++.+..++++|...+.||.|+            +..||+|++.... .....+.+|+.+++++ +||||++       
T Consensus         8 ~~~~~~~~~~~~~~~~~~lg~g~~~~vy~~~~~~~~~~~~ik~~~~~~-~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~   86 (286)
T cd06638           8 IIFDSFPDPSDTWEIIETIGKGTYGKVFKVLNKKNGSKAAVKILDPIH-DIDEEIEAEYNILKALSDHPNVVKFYGMYYK   86 (286)
T ss_pred             EEeecCCCcccceeeeeeeccCCCcEEEEEEECCCCceeEEEeecccc-chHHHHHHHHHHHHHHhcCCCeeeeeeeeee
Confidence            45567777888888888888875            4668999876432 2235788899999999 6999997       


Q ss_pred             ------------------------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEe
Q 045449          678 ------------------------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHIS  715 (823)
Q Consensus       678 ------------------------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~  715 (823)
                                                                ++.|++++|.|+|+.+++|||+||+||+++.++.+||+
T Consensus        87 ~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~nili~~~~~~kl~  166 (286)
T cd06638          87 KDVKNGDQLWLVLELCNGGSVTDLVKGFLKRGERMEEPIIAYILHEALMGLQHLHVNKTIHRDVKGNNILLTTEGGVKLV  166 (286)
T ss_pred             cccCCCCeEEEEEeecCCCCHHHHHHHhhccCccccHHHHHHHHHHHHHHHHHHHhCCccccCCCHHhEEECCCCCEEEc
Confidence                                                      23567888999999999999999999999999999999


Q ss_pred             ecccccccCCCCccccccccccCCCcCcccccCC-----CccccccceehhhhhhccccCCCCCcCCC
Q 045449          716 DFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTK-----GRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       716 DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-----~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      |||+++.......  ......|++.|+|||++..     ..++.++||||+||++|++.+|..|+.+.
T Consensus       167 dfg~~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slGvi~~el~~g~~p~~~~  232 (286)
T cd06638         167 DFGVSAQLTSTRL--RRNTSVGTPFWMAPEVIACEQQLDSTYDARCDVWSLGITAIELGDGDPPLADL  232 (286)
T ss_pred             cCCceeecccCCC--ccccccCCCcccChhhhchhhhccccccchhhhhhHHHHHHHHhcCCCCCCCC
Confidence            9999987643221  1233468999999998753     45789999999999999999999998654

Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear

>cd06605 PKc_MAPKK Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

Probab=99.80  E-value=2.5e-20  Score=196.15  Aligned_cols=134  Identities=27%  Similarity=0.334  Sum_probs=114.4

Q ss_pred             CeEEEEEEehHhh-HHHHHHHHHHHHHHhhcchhhHHH-----------------------------------------H
Q 045449          641 GMEVAVKVFHQQY-ERALKSFEDECEVRKRIRHRNLVK-----------------------------------------I  678 (823)
Q Consensus       641 ~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~-----------------------------------------~  678 (823)
                      +..||+|++.... ....+++.+|++++++++||||++                                         +
T Consensus        26 ~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~  105 (265)
T cd06605          26 GKIMAVKTIRLEINEAIQKQILRELDILHKCNSPYIVGFYGAFYNNGDISICMEYMDGGSLDKILKEVQGRIPERILGKI  105 (265)
T ss_pred             CcEEEEEEEecccChHHHHHHHHHHHHHHHCCCCchhhhheeeecCCEEEEEEEecCCCcHHHHHHHccCCCCHHHHHHH
Confidence            5779999887553 345578999999999999999998                                         2


Q ss_pred             HHHHHHHhhhcCC-CCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccCCCccccccc
Q 045449          679 ISSSLEYLHFGHS-IPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGD  757 (823)
Q Consensus       679 ~~~~l~~L~~~h~-~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~D  757 (823)
                      +.|++++++++|+ .+++||||||+||+++.++.+||+|||.+........    ....++..|+|||+..+..++.++|
T Consensus       106 ~~~l~~~l~~lH~~~~i~H~dl~~~ni~~~~~~~~~l~d~g~~~~~~~~~~----~~~~~~~~y~~PE~~~~~~~~~~~D  181 (265)
T cd06605         106 AVAVLKGLTYLHEKHKIIHRDVKPSNILVNSRGQIKLCDFGVSGQLVNSLA----KTFVGTSSYMAPERIQGNDYSVKSD  181 (265)
T ss_pred             HHHHHHHHHHHcCCCCeecCCCCHHHEEECCCCCEEEeecccchhhHHHHh----hcccCChhccCHHHHcCCCCCchhh
Confidence            4678889999999 9999999999999999999999999999876532211    1256889999999998889999999


Q ss_pred             eehhhhhhccccCCCCCcCCC
Q 045449          758 VCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       758 v~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      |||+||+++++.+|..|+...
T Consensus       182 v~slG~~l~~l~~g~~p~~~~  202 (265)
T cd06605         182 IWSLGLSLIELATGRFPYPPE  202 (265)
T ss_pred             HHHHHHHHHHHHhCCCCCCcc
Confidence            999999999999999998654

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity

>cd05099 PTKc_FGFR4 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4

Probab=99.80  E-value=3.5e-20  Score=200.41  Aligned_cols=137  Identities=29%  Similarity=0.375  Sum_probs=110.1

Q ss_pred             eEEEEEEehHhh-HHHHHHHHHHHHHHhhc-chhhHHHH-----------------------------------------
Q 045449          642 MEVAVKVFHQQY-ERALKSFEDECEVRKRI-RHRNLVKI-----------------------------------------  678 (823)
Q Consensus       642 ~~vavK~~~~~~-~~~~~~~~~E~~~l~~l-~h~niv~~-----------------------------------------  678 (823)
                      ..||+|++.... .....++.+|+++++++ +||||+++                                         
T Consensus        45 ~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~lv~e~~~~g~L~~~i~~~~~~~~~~~~~~~  124 (314)
T cd05099          45 VTVAVKMLKDNATDKDLADLISEMELMKLIGKHKNIINLLGVCTQEGPLYVIVEYAAKGNLREFLRARRPPGPDYTFDIT  124 (314)
T ss_pred             eEEEEEecCCCCChHHHHHHHHHHHHHHhccCCCCeeeEEEEEccCCceEEEEecCCCCcHHHHHHhcCCCccccccccc
Confidence            358999887432 34456789999999999 69999881                                         


Q ss_pred             ---------------HHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCc
Q 045449          679 ---------------ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMA  743 (823)
Q Consensus       679 ---------------~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~a  743 (823)
                                     +.|++.+|.|+|+.|++||||||+||+++.++.+||+|||+++...............++..|+|
T Consensus       125 ~~~~~~l~~~~~~~~~~qi~~aL~~lH~~gi~H~dlkp~Nill~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~a  204 (314)
T cd05099         125 KVPEEQLSFKDLVSCAYQVARGMEYLESRRCIHRDLAARNVLVTEDNVMKIADFGLARGVHDIDYYKKTSNGRLPVKWMA  204 (314)
T ss_pred             CCcccccCHHHHHHHHHHHHHHHHHHHHCCeeeccccceeEEEcCCCcEEEccccccccccccccccccccCCCCccccC
Confidence                           23788899999999999999999999999999999999999987643322211222334568999


Q ss_pred             ccccCCCccccccceehhhhhhccccC-CCCCcCCC
Q 045449          744 PEYGTKGRVSTRGDVCSFGIISGGKET-RSMTVGET  778 (823)
Q Consensus       744 PE~~~~~~~~~~~Dv~S~Gvv~~~~~~-~~~~~~~~  778 (823)
                      ||++.++.++.++|||||||++|++++ |..||...
T Consensus       205 PE~~~~~~~~~~~DiwslG~~l~el~~~g~~p~~~~  240 (314)
T cd05099         205 PEALFDRVYTHQSDVWSFGILMWEIFTLGGSPYPGI  240 (314)
T ss_pred             HHHHccCCcCccchhhHHHHHHHHHHhCCCCCCCCC
Confidence            999988889999999999999999988 77777654

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05609 STKc_MAST Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase

Probab=99.80  E-value=3.6e-20  Score=199.44  Aligned_cols=150  Identities=22%  Similarity=0.220  Sum_probs=118.9

Q ss_pred             cCCccceeeccC------------CeEEEEEEehHhh---HHHHHHHHHHHHHHhhcchhhHHH----------------
Q 045449          629 RFSENNLIGIGN------------GMEVAVKVFHQQY---ERALKSFEDECEVRKRIRHRNLVK----------------  677 (823)
Q Consensus       629 ~f~~~~~lg~g~------------~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~----------------  677 (823)
                      +|...+.+|.|+            +..||+|.+....   ....+.+.+|++++++++||||++                
T Consensus         2 ~y~~~~~l~~g~~~~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e   81 (305)
T cd05609           2 DFETIKLISNGAYGAVYLVRHKETRQRFAMKKINKQNLILRNQIQQVFVERDILTFAENPFVVSMFCSFETKRHLCMVME   81 (305)
T ss_pred             CceEeeEeecCCCeeEEEEEECCCCcEEEEEEeehhhhhhHHHHHHHHHHHHHHHhCCCCCeeeeEEEEecCCEEEEEEe
Confidence            455556666653            4679999987553   234567889999999999999998                


Q ss_pred             ------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCc-----
Q 045449          678 ------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQ-----  728 (823)
Q Consensus       678 ------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~-----  728 (823)
                                              ++.|++.+|+|+|+.+++||||||+||+++.++.+|++|||+++.......     
T Consensus        82 ~~~g~~L~~~l~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~NIll~~~~~~~l~dfg~~~~~~~~~~~~~~~  161 (305)
T cd05609          82 YVEGGDCATLLKNIGALPVDMARMYFAETVLALEYLHNYGIVHRDLKPDNLLITSMGHIKLTDFGLSKIGLMSLTTNLYE  161 (305)
T ss_pred             cCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCchHHEEECCCCCEEEeeCCCccccCcCccccccc
Confidence                                    256788899999999999999999999999999999999999874211000     


Q ss_pred             --------cccccccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCC
Q 045449          729 --------LSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       729 --------~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                              ........|+..|+|||++....++.++|+|||||+++++.+|..||.+.
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~vl~el~~g~~pf~~~  219 (305)
T cd05609         162 GHIEKDTREFLDKQVCGTPEYIAPEVILRQGYGKPVDWWAMGIILYEFLVGCVPFFGD  219 (305)
T ss_pred             cccccchhhccccCCccCccccCchhccCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Confidence                    00111245788999999998888999999999999999999999998653

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that a

>cd06630 STKc_MEKK1 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

Probab=99.80  E-value=5.1e-20  Score=194.19  Aligned_cols=137  Identities=28%  Similarity=0.337  Sum_probs=113.3

Q ss_pred             CeEEEEEEehHhh------HHHHHHHHHHHHHHhhcchhhHHH-------------------------------------
Q 045449          641 GMEVAVKVFHQQY------ERALKSFEDECEVRKRIRHRNLVK-------------------------------------  677 (823)
Q Consensus       641 ~~~vavK~~~~~~------~~~~~~~~~E~~~l~~l~h~niv~-------------------------------------  677 (823)
                      +..||+|++....      ....+.+.+|++++++++|+||++                                     
T Consensus        25 ~~~~alk~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~  104 (268)
T cd06630          25 GTLMAVKQVTYVRNTSSEQEEVVEALRKEIRLMARLNHPHIIRMLGATCEDSHFNLFVEWMAGGSVSHLLSKYGAFKEAV  104 (268)
T ss_pred             CcEEEEEEeecccCCchhHHHHHHHHHHHHHHHHHcCCCceehhhceeccCCeEEEEEeccCCCcHHHHHHHhCCCCHHH
Confidence            5779999886432      234578999999999999999998                                     


Q ss_pred             ---HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCC-cEEEeecccccccCCCCcc--ccccccccCCCcCcccccCCCc
Q 045449          678 ---IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDM-VAHISDFGIAKLLSGEDQL--SKQTQTLATIGYMAPEYGTKGR  751 (823)
Q Consensus       678 ---~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~-~~kl~DfGla~~~~~~~~~--~~~~~~~gt~~y~aPE~~~~~~  751 (823)
                         ++.|++.+|.++|+.+++||||||+||+++.++ .+||+|||.++........  .......|+..|+|||+..+..
T Consensus       105 ~~~~~~ql~~al~~LH~~~i~H~~i~~~nil~~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~PE~~~~~~  184 (268)
T cd06630         105 IINYTEQLLRGLSYLHENQIIHRDVKGANLLIDSTGQRLRIADFGAAARLAAKGTGAGEFQGQLLGTIAFMAPEVLRGEQ  184 (268)
T ss_pred             HHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCCEEEEcccccccccccccccCCccccccccccceeCHhHhccCC
Confidence               357889999999999999999999999998765 6999999999876533211  1112346889999999998888


Q ss_pred             cccccceehhhhhhccccCCCCCcCC
Q 045449          752 VSTRGDVCSFGIISGGKETRSMTVGE  777 (823)
Q Consensus       752 ~~~~~Dv~S~Gvv~~~~~~~~~~~~~  777 (823)
                      ++.++||||+||+++++++|..||..
T Consensus       185 ~~~~~Dv~slG~~l~~l~~g~~p~~~  210 (268)
T cd06630         185 YGRSCDVWSVGCVIIEMATAKPPWNA  210 (268)
T ss_pred             CCcccchHHHHHHHHHHHhCCCCCCC
Confidence            99999999999999999999999864

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their

>cd05083 PTKc_Chk Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

Probab=99.80  E-value=2.9e-20  Score=194.46  Aligned_cols=143  Identities=28%  Similarity=0.419  Sum_probs=116.2

Q ss_pred             cCCccceeeccC----------CeEEEEEEehHhhHHHHHHHHHHHHHHhhcchhhHHH---------------------
Q 045449          629 RFSENNLIGIGN----------GMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVK---------------------  677 (823)
Q Consensus       629 ~f~~~~~lg~g~----------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~---------------------  677 (823)
                      +|...+.+|.|+          +..||+|......  ..+.|.+|+.++++++|||+++                     
T Consensus         7 ~~~~~~~lg~g~~g~v~~~~~~~~~~~iK~~~~~~--~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~v~e~~~~~~   84 (254)
T cd05083           7 KLTLGEIIGEGEFGAVLQGEYTGQKVAVKNIKCDV--TAQAFLEETAVMTKLHHKNLVRLLGVILHNGLYIVMELMSKGN   84 (254)
T ss_pred             HceeeeeeccCCCCceEecccCCCceEEEeecCcc--hHHHHHHHHHHHHhCCCCCcCeEEEEEcCCCcEEEEECCCCCC
Confidence            344555666553          5679999986543  2367899999999999999998                     


Q ss_pred             --------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCcccccccccc
Q 045449          678 --------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLA  737 (823)
Q Consensus       678 --------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~g  737 (823)
                                          ++.|++.++.|+|+.+++|||+||+||+++.++.+||+|||+++......     .....
T Consensus        85 L~~~l~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~~~H~dl~p~nili~~~~~~kl~Dfg~~~~~~~~~-----~~~~~  159 (254)
T cd05083          85 LVNFLRTRGRALVSVIQLLQFSLDVAEGMEYLESKKLVHRDLAARNILVSEDGVAKVSDFGLARVGSMGV-----DNSKL  159 (254)
T ss_pred             HHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHHHhCCeeccccCcceEEEcCCCcEEECCCccceeccccC-----CCCCC
Confidence                                25688899999999999999999999999999999999999987643211     12234


Q ss_pred             CCCcCcccccCCCccccccceehhhhhhccccC-CCCCcCCC
Q 045449          738 TIGYMAPEYGTKGRVSTRGDVCSFGIISGGKET-RSMTVGET  778 (823)
Q Consensus       738 t~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~-~~~~~~~~  778 (823)
                      +..|+|||++.++.++.++|||||||+++++++ |..||...
T Consensus       160 ~~~y~~pe~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~  201 (254)
T cd05083         160 PVKWTAPEALKHKKFSSKSDVWSYGVLLWEVFSYGRAPYPKM  201 (254)
T ss_pred             CceecCHHHhccCCcCchhhHHHHHHHHHHHHhCCCCCCccC
Confidence            578999999988899999999999999999987 88888654

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src ki

>cd06648 STKc_PAK_II Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase

Probab=99.80  E-value=4.5e-20  Score=196.63  Aligned_cols=135  Identities=27%  Similarity=0.334  Sum_probs=114.7

Q ss_pred             CeEEEEEEehHhhHHHHHHHHHHHHHHhhcchhhHHH---------------------------------------HHHH
Q 045449          641 GMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVK---------------------------------------IISS  681 (823)
Q Consensus       641 ~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~---------------------------------------~~~~  681 (823)
                      +..||+|++........+.+.+|+.++++++|+||++                                       ++.|
T Consensus        44 ~~~~~iK~~~~~~~~~~~~~~~e~~~l~~~~h~~vv~~~~~~~~~~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~q  123 (285)
T cd06648          44 GRQVAVKKMDLRKQQRRELLFNEVVIMRDYQHPNIVEMYSSYLVGDELWVVMEFLEGGALTDIVTHTRMNEEQIATVCLA  123 (285)
T ss_pred             CCEEEEEEEeccchhHHHHHHHHHHHHHHcCCCChheEEEEEEcCCeEEEEEeccCCCCHHHHHHhCCCCHHHHHHHHHH
Confidence            5679999887555555567899999999999999998                                       3567


Q ss_pred             HHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccCCCccccccceehh
Q 045449          682 SLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSF  761 (823)
Q Consensus       682 ~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~  761 (823)
                      ++.+|.++|+.+++||||||+||+++.++.++++|||.+........  ......|++.|+|||+..+..++.++|||||
T Consensus       124 l~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~~l~d~g~~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~sl  201 (285)
T cd06648         124 VLKALSFLHAQGVIHRDIKSDSILLTSDGRVKLSDFGFCAQVSKEVP--RRKSLVGTPYWMAPEVISRLPYGTEVDIWSL  201 (285)
T ss_pred             HHHHHHHHHhCCeecCCCChhhEEEcCCCcEEEcccccchhhccCCc--ccccccCCccccCHHHhcCCCCCCcccHHHH
Confidence            88899999999999999999999999999999999998876543221  1223568999999999988889999999999


Q ss_pred             hhhhccccCCCCCcCC
Q 045449          762 GIISGGKETRSMTVGE  777 (823)
Q Consensus       762 Gvv~~~~~~~~~~~~~  777 (823)
                      ||+++++++|..||..
T Consensus       202 Gv~l~ell~g~~p~~~  217 (285)
T cd06648         202 GIMVIEMVDGEPPYFN  217 (285)
T ss_pred             HHHHHHHHhCCCCCcC
Confidence            9999999999999854

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs foun

>cd06607 STKc_TAO Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins

Probab=99.80  E-value=4.3e-20  Score=199.05  Aligned_cols=144  Identities=29%  Similarity=0.362  Sum_probs=117.0

Q ss_pred             cCCccceeeccC------------CeEEEEEEehHhh---HHHHHHHHHHHHHHhhcchhhHHH----------------
Q 045449          629 RFSENNLIGIGN------------GMEVAVKVFHQQY---ERALKSFEDECEVRKRIRHRNLVK----------------  677 (823)
Q Consensus       629 ~f~~~~~lg~g~------------~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~----------------  677 (823)
                      +|...+.+|.|+            +..||+|++....   ....+++.+|++++++++||||++                
T Consensus        16 ~y~~~~~lg~g~~g~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~~Ei~~l~~l~h~niv~~~~~~~~~~~~~lv~e   95 (307)
T cd06607          16 LFTDLREIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQQLRHPNTIEYKGCYLREHTAWLVME   95 (307)
T ss_pred             hhhhheeecCCCCeEEEEEEEcCCCcEEEEEEEeccccCcHHHHHHHHHHHHHHHhCCCCCEEEEEEEEEeCCeEEEEHH
Confidence            355555566653            6779999885322   334467899999999999999987                


Q ss_pred             ------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCcccccc
Q 045449          678 ------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQT  733 (823)
Q Consensus       678 ------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~  733 (823)
                                              ++.|++.+|.|+|+.+|+||||+|+||+++.++.+||+|||+++.....      .
T Consensus        96 ~~~g~l~~~~~~~~~~l~~~~~~~~~~ql~~~L~~LH~~~i~H~dl~p~nIl~~~~~~~kL~dfg~~~~~~~~------~  169 (307)
T cd06607          96 YCLGSASDILEVHKKPLQEVEIAAICHGALQGLAYLHSHERIHRDIKAGNILLTEPGTVKLADFGSASLVSPA------N  169 (307)
T ss_pred             hhCCCHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHCCceecCCCcccEEECCCCCEEEeecCcceecCCC------C
Confidence                                    3567889999999999999999999999999999999999998765322      2


Q ss_pred             ccccCCCcCcccccC---CCccccccceehhhhhhccccCCCCCcCCC
Q 045449          734 QTLATIGYMAPEYGT---KGRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       734 ~~~gt~~y~aPE~~~---~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      ...|++.|+|||++.   .+.++.++|||||||++|++.+|..|+...
T Consensus       170 ~~~~~~~y~aPE~~~~~~~~~~~~~sDv~s~G~il~el~tg~~p~~~~  217 (307)
T cd06607         170 SFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNM  217 (307)
T ss_pred             CccCCccccCceeeeccCCCCCCcccchHHHHHHHHHHHcCCCCCCCc
Confidence            346888999999874   456889999999999999999999988653

Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily

>cd06611 STKc_SLK_like Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases

Probab=99.80  E-value=1.8e-20  Score=199.13  Aligned_cols=136  Identities=29%  Similarity=0.368  Sum_probs=114.8

Q ss_pred             CeEEEEEEehHhhHHHHHHHHHHHHHHhhcchhhHHH-----------------------------------------HH
Q 045449          641 GMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVK-----------------------------------------II  679 (823)
Q Consensus       641 ~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~-----------------------------------------~~  679 (823)
                      +..||+|++........+.|.+|++++++++|+||++                                         ++
T Consensus        30 ~~~~~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~l~~~~~~~~~  109 (280)
T cd06611          30 GLFAAAKIIQIESEEELEDFMVEIDILSECKHPNIVGLYEAYFYENKLWILIEFCDGGALDSIMLELERGLTEPQIRYVC  109 (280)
T ss_pred             CcEEEEEEEeeCCHHHHHHHHHHHHHHHhCCCCceeEEEEEEecCCeEEEEeeccCCCcHHHHHHHhcCCCCHHHHHHHH
Confidence            6789999997666666678999999999999999998                                         35


Q ss_pred             HHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccC-----CCcccc
Q 045449          680 SSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGT-----KGRVST  754 (823)
Q Consensus       680 ~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~-----~~~~~~  754 (823)
                      .|++++|+|+|+.+|+|||+||+||+++.++.++|+|||++........  ......|++.|+|||++.     ...++.
T Consensus       110 ~ql~~~l~~lh~~~i~h~dl~p~nili~~~~~~~l~d~g~~~~~~~~~~--~~~~~~~~~~y~~PE~~~~~~~~~~~~~~  187 (280)
T cd06611         110 RQMLEALNFLHSHKVIHRDLKAGNILLTLDGDVKLADFGVSAKNKSTLQ--KRDTFIGTPYWMAPEVVACETFKDNPYDY  187 (280)
T ss_pred             HHHHHHHHHHHHCCcccCCCChhhEEECCCCCEEEccCccchhhccccc--ccceeecchhhcCHHHHhhcccCCCCCCc
Confidence            7888999999999999999999999999999999999999876533221  223456899999999874     345688


Q ss_pred             ccceehhhhhhccccCCCCCcCCC
Q 045449          755 RGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       755 ~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      ++|||||||++|++.+|..||...
T Consensus       188 ~sDi~slG~il~~l~~g~~p~~~~  211 (280)
T cd06611         188 KADIWSLGITLIELAQMEPPHHEL  211 (280)
T ss_pred             cccHHHHHHHHHHHHhCCCCcccC
Confidence            999999999999999999998664

Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated anti

>cd05077 PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=99.80  E-value=2.9e-20  Score=195.49  Aligned_cols=131  Identities=18%  Similarity=0.292  Sum_probs=109.3

Q ss_pred             CeEEEEEEehHhhHHHHHHHHHHHHHHhhcchhhHHH-----------------------------------------HH
Q 045449          641 GMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVK-----------------------------------------II  679 (823)
Q Consensus       641 ~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~-----------------------------------------~~  679 (823)
                      ...||+|.+..........|.+|+.++++++||||++                                         ++
T Consensus        32 ~~~v~~k~~~~~~~~~~~~~~~~~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~i~  111 (262)
T cd05077          32 EIKVILKVLDPSHRDISLAFFETASMMRQVSHKHIVLLYGVCVRDVENIMVEEFVEFGPLDLFMHRKSDVLTTPWKFKVA  111 (262)
T ss_pred             ceeEEEeecChhhhhHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCCCEEEEecccCCCHHHHHHhcCCCCCHHHHHHHH
Confidence            4679999987766666678999999999999999998                                         35


Q ss_pred             HHHHHHhhhcCCCCEEeccCCCCCEEeCCCCc-------EEEeecccccccCCCCccccccccccCCCcCcccccC-CCc
Q 045449          680 SSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMV-------AHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGT-KGR  751 (823)
Q Consensus       680 ~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~-------~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~-~~~  751 (823)
                      .|++++|+|+|+.+|+||||||+|||++.++.       +|++|||++......      ....++..|+|||++. +..
T Consensus       112 ~qi~~~l~~lH~~~ivH~dlkp~Nill~~~~~~~~~~~~~~l~d~g~~~~~~~~------~~~~~~~~y~aPE~~~~~~~  185 (262)
T cd05077         112 KQLASALSYLEDKDLVHGNVCTKNILLAREGIDGECGPFIKLSDPGIPITVLSR------QECVERIPWIAPECVEDSKN  185 (262)
T ss_pred             HHHHHHHHHhhhCCeECCCCCcccEEEecCCccCCCCceeEeCCCCCCccccCc------ccccccccccChhhhcCCCC
Confidence            78999999999999999999999999986653       899999998765322      2345788999999876 456


Q ss_pred             cccccceehhhhhhcccc-CCCCCcCC
Q 045449          752 VSTRGDVCSFGIISGGKE-TRSMTVGE  777 (823)
Q Consensus       752 ~~~~~Dv~S~Gvv~~~~~-~~~~~~~~  777 (823)
                      ++.++|||||||++|+++ .+..|+..
T Consensus       186 ~~~~~DiwslG~~l~el~~~~~~p~~~  212 (262)
T cd05077         186 LSIAADKWSFGTTLWEICYNGEIPLKD  212 (262)
T ss_pred             CCchhHHHHHHHHHHHHHhCCCCCCCC
Confidence            899999999999999997 47777654

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic dom

>cd00192 PTKc Catalytic domain of Protein Tyrosine Kinases

Probab=99.80  E-value=5.2e-20  Score=193.03  Aligned_cols=138  Identities=30%  Similarity=0.409  Sum_probs=115.9

Q ss_pred             CeEEEEEEehHhhHH-HHHHHHHHHHHHhhcchhhHHH------------------------------------------
Q 045449          641 GMEVAVKVFHQQYER-ALKSFEDECEVRKRIRHRNLVK------------------------------------------  677 (823)
Q Consensus       641 ~~~vavK~~~~~~~~-~~~~~~~E~~~l~~l~h~niv~------------------------------------------  677 (823)
                      +..||||++...... ..+.+.+|++.+.+++|+|+++                                          
T Consensus        23 ~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~  102 (262)
T cd00192          23 TTEVAVKTLKEDASEEERKDFLKEARVMKKLGHPNVVRLLGVCTEEEPLYLVLEYMEGGDLLDYLRKSRPVFPSPEKSTL  102 (262)
T ss_pred             CceEEeEeeccccchhHHHHHHHHHHHHhhcCCCChheeeeeecCCCceEEEEEeccCCcHHHHHhhccccccccccccC
Confidence            578999999765433 3678999999999999999998                                          


Q ss_pred             -------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccCCC
Q 045449          678 -------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKG  750 (823)
Q Consensus       678 -------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~  750 (823)
                             ++.|++.+|+++|+.+++||||||+||+++.++.+||+|||.++...............++..|+|||.....
T Consensus       103 ~~~~~~~~~~~l~~al~~lH~~~i~H~di~p~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~  182 (262)
T cd00192         103 SLKDLLSFAIQIAKGMEYLASKKFVHRDLAARNCLVGEDLVVKISDFGLSRDVYDDDYYRKKTGGKLPIRWMAPESLKDG  182 (262)
T ss_pred             CHHHHHHHHHHHHHHHHHHHcCCcccCccCcceEEECCCCcEEEcccccccccccccccccccCCCcCccccCHHHhccC
Confidence                   2346778899999999999999999999999999999999999877554322223345678999999999888


Q ss_pred             ccccccceehhhhhhccccC-CCCCcCCC
Q 045449          751 RVSTRGDVCSFGIISGGKET-RSMTVGET  778 (823)
Q Consensus       751 ~~~~~~Dv~S~Gvv~~~~~~-~~~~~~~~  778 (823)
                      .++.++||||+||+++++++ |..||...
T Consensus       183 ~~~~~~Di~slG~il~~l~~~g~~p~~~~  211 (262)
T cd00192         183 IFTSKSDVWSFGVLLWEIFTLGATPYPGL  211 (262)
T ss_pred             CcchhhccHHHHHHHHHHHhcCCCCCCCC
Confidence            89999999999999999998 58888665

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligan

>cd05060 PTKc_Syk_like Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases

Probab=99.80  E-value=4.3e-20  Score=193.58  Aligned_cols=138  Identities=28%  Similarity=0.362  Sum_probs=113.7

Q ss_pred             CeEEEEEEehHhhH-HHHHHHHHHHHHHhhcchhhHHH---------------------------------------HHH
Q 045449          641 GMEVAVKVFHQQYE-RALKSFEDECEVRKRIRHRNLVK---------------------------------------IIS  680 (823)
Q Consensus       641 ~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~---------------------------------------~~~  680 (823)
                      +..||+|.+..... ...+++.+|+++++++.|+||++                                       ++.
T Consensus        23 ~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~  102 (257)
T cd05060          23 EVEVAVKTLKQEHIAAGKKEFLREASVMAQLDHPCIVRLIGVCKGEPLMLVMELAPLGPLLKYLKKRREIPVSDLKELAH  102 (257)
T ss_pred             cceEEEEecccccchHHHHHHHHHHHHHHhcCCCCeeeEEEEEcCCceEEEEEeCCCCcHHHHHHhCCCCCHHHHHHHHH
Confidence            36799999875543 35578999999999999999998                                       357


Q ss_pred             HHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccc-cccccccCCCcCcccccCCCcccccccee
Q 045449          681 SSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLS-KQTQTLATIGYMAPEYGTKGRVSTRGDVC  759 (823)
Q Consensus       681 ~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~  759 (823)
                      |++++|.++|..+++||||||+||+++.++.+||+|||+++......... ......++..|+|||...+..++.++|||
T Consensus       103 qi~~~l~~lh~~~i~H~di~p~nili~~~~~~kl~df~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~  182 (257)
T cd05060         103 QVAMGMAYLESKHFVHRDLAARNVLLVNRHQAKISDFGMSRALGAGSDYYRATTAGRWPLKWYAPECINYGKFSSKSDVW  182 (257)
T ss_pred             HHHHHHHHHhhcCeeccCcccceEEEcCCCcEEeccccccceeecCCcccccccCccccccccCHHHhcCCCCCccchHH
Confidence            88899999999999999999999999999999999999998764333211 11122345689999999888899999999


Q ss_pred             hhhhhhccccC-CCCCcCCC
Q 045449          760 SFGIISGGKET-RSMTVGET  778 (823)
Q Consensus       760 S~Gvv~~~~~~-~~~~~~~~  778 (823)
                      ||||+++++++ |..||.+.
T Consensus       183 slG~~l~~~~~~g~~p~~~~  202 (257)
T cd05060         183 SYGVTLWEAFSYGAKPYGEM  202 (257)
T ss_pred             HHHHHHHHHHcCCCCCcccC
Confidence            99999999997 88888654

Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, mi

>cd06616 PKc_MKK4 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4

Probab=99.80  E-value=2.9e-20  Score=198.41  Aligned_cols=135  Identities=30%  Similarity=0.366  Sum_probs=111.0

Q ss_pred             CeEEEEEEehHhh-HHHHHHHHHHHHHHhhcc-hhhHHH-----------------------------------------
Q 045449          641 GMEVAVKVFHQQY-ERALKSFEDECEVRKRIR-HRNLVK-----------------------------------------  677 (823)
Q Consensus       641 ~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~-h~niv~-----------------------------------------  677 (823)
                      +..||||.+.... ......+.+|+.++.++. |+||++                                         
T Consensus        29 ~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~~~~~~~iv~~~~~~~~~~~~~~~~e~~~~~l~~l~~~~~~~~~~~l~~~~  108 (288)
T cd06616          29 GTIMAVKRIRSTVDEKEQKRLLMDLDVVMRSSDCPYIVKFYGALFREGDCWICMELMDISLDKFYKYVYEVLKSVIPEEI  108 (288)
T ss_pred             CCEEEEEEehhccChHHHHHHHHHHHHHHHhcCCCCEeeeeeEEecCCcEEEEEecccCCHHHHHHHHHHhhcCCCCHHH
Confidence            5779999987543 344568899999999996 999997                                         


Q ss_pred             ---HHHHHHHHhhhcCC-CCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccCCC---
Q 045449          678 ---IISSSLEYLHFGHS-IPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKG---  750 (823)
Q Consensus       678 ---~~~~~l~~L~~~h~-~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~---  750 (823)
                         ++.+++.+|+|+|+ .+++||||||+||+++.++.+||+|||+++.......   .....|++.|+|||++...   
T Consensus       109 ~~~i~~~i~~~l~~lh~~~~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~~~---~~~~~~~~~y~aPE~~~~~~~~  185 (288)
T cd06616         109 LGKIAVATVKALNYLKEELKIIHRDVKPSNILLDRNGNIKLCDFGISGQLVDSIA---KTRDAGCRPYMAPERIDPSARD  185 (288)
T ss_pred             HHHHHHHHHHHHHHHhhcCCeeccCCCHHHEEEccCCcEEEeecchhHHhccCCc---cccccCccCccCHHHhcccccc
Confidence               23567778888886 5999999999999999999999999999986543221   1234688999999998766   


Q ss_pred             ccccccceehhhhhhccccCCCCCcCCC
Q 045449          751 RVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       751 ~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      .++.++||||+||+++++.+|..||...
T Consensus       186 ~~~~~~Di~slG~il~el~~g~~p~~~~  213 (288)
T cd06616         186 GYDVRSDVWSLGITLYEVATGKFPYPKW  213 (288)
T ss_pred             CCcchhhhhHHHHHHHHHHhCCCCchhc
Confidence            6899999999999999999999998654

Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates

>cd07861 STKc_CDK1_euk Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like

Probab=99.80  E-value=2.1e-20  Score=199.16  Aligned_cols=136  Identities=30%  Similarity=0.363  Sum_probs=111.9

Q ss_pred             CeEEEEEEehHhh--HHHHHHHHHHHHHHhhcchhhHHH-----------------------------------------
Q 045449          641 GMEVAVKVFHQQY--ERALKSFEDECEVRKRIRHRNLVK-----------------------------------------  677 (823)
Q Consensus       641 ~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~-----------------------------------------  677 (823)
                      +..||||++....  ....+.+.+|+.++++++||||++                                         
T Consensus        25 ~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~~~l~~~~~~~~~~~~~~~~~~~  104 (285)
T cd07861          25 GQIVAMKKIRLESEEEGVPSTAIREISLLKELQHPNIVCLQDVLMQESRLYLIFEFLSMDLKKYLDSLPKGQYMDAELVK  104 (285)
T ss_pred             CcEEEEEEeccccccCCchHHHHHHHHHHHhcCCCCEeeeEEEEeeCCeEEEEEecCCCCHHHHHhcCCCCCcCCHHHHH
Confidence            5779999886432  223467889999999999999998                                         


Q ss_pred             -HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccCCC-ccccc
Q 045449          678 -IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKG-RVSTR  755 (823)
Q Consensus       678 -~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~  755 (823)
                       ++.|++++|.|+|+.+++||||||+||+++.++.+||+|||+++......  .......+++.|+|||++.+. .++.+
T Consensus       105 ~~~~qi~~~L~~lH~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~--~~~~~~~~~~~y~aPE~~~~~~~~~~~  182 (285)
T cd07861         105 SYLYQILQGILFCHSRRVLHRDLKPQNLLIDNKGVIKLADFGLARAFGIPV--RVYTHEVVTLWYRAPEVLLGSPRYSTP  182 (285)
T ss_pred             HHHHHHHHHHHHHHhCCeeecCCCHHHEEEcCCCcEEECcccceeecCCCc--ccccCCcccccccChHHhcCCCCcCcH
Confidence             35788999999999999999999999999999999999999997653321  112334678999999987654 47899


Q ss_pred             cceehhhhhhccccCCCCCcCCC
Q 045449          756 GDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       756 ~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      +||||+||+++++.+|..||.+.
T Consensus       183 ~Dv~slG~il~~l~tg~~~~~~~  205 (285)
T cd07861         183 VDIWSIGTIFAEMATKKPLFHGD  205 (285)
T ss_pred             HHHHHHHHHHHHHHHCCCCCCCC
Confidence            99999999999999999988654

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2

>cd06631 STKc_YSK4 Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4

Probab=99.80  E-value=5.2e-20  Score=193.87  Aligned_cols=138  Identities=23%  Similarity=0.305  Sum_probs=113.4

Q ss_pred             CeEEEEEEehHh------hHHHHHHHHHHHHHHhhcchhhHHH-------------------------------------
Q 045449          641 GMEVAVKVFHQQ------YERALKSFEDECEVRKRIRHRNLVK-------------------------------------  677 (823)
Q Consensus       641 ~~~vavK~~~~~------~~~~~~~~~~E~~~l~~l~h~niv~-------------------------------------  677 (823)
                      +..||||.+...      .....+.+.+|++++++++|+||++                                     
T Consensus        24 ~~~~avk~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~  103 (265)
T cd06631          24 GQLIAVKQVELDTSNVLAAEKEYEKLQEEVDLLKSLKHVNIVQYLGTCLDDNTISIFMEFVPGGSISSILNRFGPLPEPV  103 (265)
T ss_pred             CCeEEEEEeecCccchhhHHHHHHHHHHHHHHHHhcCCCCEeeEeeEeecCCeEEEEEecCCCCcHHHHHHhcCCCCHHH
Confidence            467899987532      1334467999999999999999988                                     


Q ss_pred             ---HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCc----cccccccccCCCcCcccccCCC
Q 045449          678 ---IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQ----LSKQTQTLATIGYMAPEYGTKG  750 (823)
Q Consensus       678 ---~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~----~~~~~~~~gt~~y~aPE~~~~~  750 (823)
                         ++.|++.+|.++|+.+++|+||||+||+++.++.+||+|||+++.......    ........|+..|+|||+..+.
T Consensus       104 ~~~~~~qi~~~l~~lH~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~  183 (265)
T cd06631         104 FCKYTKQILDGVAYLHNNCVVHRDIKGNNVMLMPNGIIKLIDFGCARRLAWVGLHGTHSNMLKSMHGTPYWMAPEVINES  183 (265)
T ss_pred             HHHHHHHHHHHHHHHHhCCcccCCcCHHhEEECCCCeEEeccchhhHhhhhccccccccccccccCCCccccChhhhcCC
Confidence               356888899999999999999999999999999999999999886532111    1112234689999999999888


Q ss_pred             ccccccceehhhhhhccccCCCCCcCCC
Q 045449          751 RVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       751 ~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      .++.++||||+||+++++.+|..||...
T Consensus       184 ~~~~~~Dv~slG~~~~~l~~g~~p~~~~  211 (265)
T cd06631         184 GYGRKSDIWSIGCTVFEMATGKPPLASM  211 (265)
T ss_pred             CCcchhhHHHHHHHHHHHHhCCCccccC
Confidence            8999999999999999999999999653

Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals.

>cd06612 STKc_MST1_2 Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

Probab=99.80  E-value=4.2e-20  Score=193.37  Aligned_cols=134  Identities=28%  Similarity=0.377  Sum_probs=114.9

Q ss_pred             CeEEEEEEehHhhHHHHHHHHHHHHHHhhcchhhHHH-----------------------------------------HH
Q 045449          641 GMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVK-----------------------------------------II  679 (823)
Q Consensus       641 ~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~-----------------------------------------~~  679 (823)
                      +..||+|.+.....  .+++.+|++++++++|+||++                                         ++
T Consensus        28 ~~~~~~k~~~~~~~--~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~l~~e~~~~~~L~~~l~~~~~~l~~~~~~~~~  105 (256)
T cd06612          28 GQVVAIKVVPVEED--LQEIIKEISILKQCDSPYIVKYYGSYFKNTDLWIVMEYCGAGSVSDIMKITNKTLTEEEIAAIL  105 (256)
T ss_pred             CcEEEEEEeecHHH--HHHHHHHHHHHHhCCCCcEeeeeeeeecCCcEEEEEecCCCCcHHHHHHhCccCCCHHHHHHHH
Confidence            57799999875533  578999999999999999998                                         35


Q ss_pred             HHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccCCCcccccccee
Q 045449          680 SSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVC  759 (823)
Q Consensus       680 ~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~  759 (823)
                      .|++++|.|+|..+++|||++|+||+++.++.+||+|||++........  ......|+..|+|||++.+..++.++|||
T Consensus       106 ~~l~~~l~~lh~~~i~H~dl~~~ni~~~~~~~~~l~dfg~~~~~~~~~~--~~~~~~~~~~y~~PE~~~~~~~~~~~Di~  183 (256)
T cd06612         106 YQTLKGLEYLHSNKKIHRDIKAGNILLNEEGQAKLADFGVSGQLTDTMA--KRNTVIGTPFWMAPEVIQEIGYNNKADIW  183 (256)
T ss_pred             HHHHHHHHHHHHCCcccCCCCcceEEECCCCcEEEcccccchhcccCcc--ccccccCCccccCHHHHhcCCCCchhhHH
Confidence            6788899999999999999999999999999999999999987643321  12334588999999999888899999999


Q ss_pred             hhhhhhccccCCCCCcCCC
Q 045449          760 SFGIISGGKETRSMTVGET  778 (823)
Q Consensus       760 S~Gvv~~~~~~~~~~~~~~  778 (823)
                      ||||+++++++|..|+...
T Consensus       184 s~G~il~~l~~g~~p~~~~  202 (256)
T cd06612         184 SLGITAIEMAEGKPPYSDI  202 (256)
T ss_pred             HHHHHHHHHHhCCCCCCCc
Confidence            9999999999999998653

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a

>cd05041 PTKc_Fes_like Catalytic domain of Fes-like Protein Tyrosine Kinases

Probab=99.80  E-value=3.5e-20  Score=193.43  Aligned_cols=138  Identities=28%  Similarity=0.336  Sum_probs=111.5

Q ss_pred             CeEEEEEEehHhh-HHHHHHHHHHHHHHhhcchhhHHH-----------------------------------------H
Q 045449          641 GMEVAVKVFHQQY-ERALKSFEDECEVRKRIRHRNLVK-----------------------------------------I  678 (823)
Q Consensus       641 ~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~-----------------------------------------~  678 (823)
                      ++.||+|.+.... ....+.|.+|+++++++.|+||++                                         +
T Consensus        19 ~~~v~~K~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~~~~~l~~~l~~~~~~~~~~~~~~~   98 (251)
T cd05041          19 NTEVAVKTCRSTLPPDLKRKFLQEAEILKQYDHPNIVKLIGVCVQKQPIYIVMELVPGGSLLTFLRKKKNRLTVKKLLQM   98 (251)
T ss_pred             CCcEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCeEEEEEEEecCCCeEEEEEcCCCCcHHHHHHhcCCCCCHHHHHHH
Confidence            5789999886543 235578999999999999999997                                         2


Q ss_pred             HHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccCCCccccccce
Q 045449          679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDV  758 (823)
Q Consensus       679 ~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv  758 (823)
                      +.+++++++++|+.+++||||||+||+++.++.+||+|||+++...............++..|+|||++.++.++.++||
T Consensus        99 ~~~~~~~l~~lH~~~i~h~di~p~nili~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di  178 (251)
T cd05041          99 SLDAAAGMEYLESKNCIHRDLAARNCLVGENNVLKISDFGMSREEEGGIYTVSDGLKQIPIKWTAPEALNYGRYTSESDV  178 (251)
T ss_pred             HHHHHHHHHHHHhCCEehhhcCcceEEEcCCCcEEEeeccccccccCCcceeccccCcceeccCChHhhccCCCCcchhH
Confidence            45778889999999999999999999999999999999999986542211111112234567999999988889999999


Q ss_pred             ehhhhhhccccC-CCCCcCCC
Q 045449          759 CSFGIISGGKET-RSMTVGET  778 (823)
Q Consensus       759 ~S~Gvv~~~~~~-~~~~~~~~  778 (823)
                      ||+||+++++.+ +..||...
T Consensus       179 ~slG~i~~~l~t~~~~p~~~~  199 (251)
T cd05041         179 WSYGILLWETFSLGDTPYPGM  199 (251)
T ss_pred             HHHHHHHHHHHhccCCCCccC
Confidence            999999999998 77777554

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr k

>cd06629 STKc_MAPKKK_Bck1_like Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

Probab=99.79  E-value=8.8e-20  Score=192.94  Aligned_cols=138  Identities=29%  Similarity=0.339  Sum_probs=111.6

Q ss_pred             CeEEEEEEehHhh----------HHHHHHHHHHHHHHhhcchhhHHH---------------------------------
Q 045449          641 GMEVAVKVFHQQY----------ERALKSFEDECEVRKRIRHRNLVK---------------------------------  677 (823)
Q Consensus       641 ~~~vavK~~~~~~----------~~~~~~~~~E~~~l~~l~h~niv~---------------------------------  677 (823)
                      +..||||.++...          ....+.+.+|++++++++|+|+++                                 
T Consensus        26 ~~~~a~K~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~l  105 (272)
T cd06629          26 GEMMAVKQVELPATIAGRHDSRQKDMVKALRSEIETLKDLDHLNIVQYLGFETTEEYLSIFLEYVPGGSIGSCLRTYGRF  105 (272)
T ss_pred             CceeeeeeeechhhhhcccchHHHHHHHHHHHHHHHHHhcCCCCcceEEEEeccCCceEEEEecCCCCcHHHHHhhccCC
Confidence            5679999875321          223457889999999999999988                                 


Q ss_pred             -------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccCCC
Q 045449          678 -------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKG  750 (823)
Q Consensus       678 -------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~  750 (823)
                             ++.|++.+|.++|+.+++||||||+||+++.++.++++|||+++...............|+..|+|||+....
T Consensus       106 ~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~~~nil~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~  185 (272)
T cd06629         106 EEQLVRFFTEQVLEGLAYLHSKGILHRDLKADNLLVDADGICKISDFGISKKSDDIYDNDQNMSMQGSVFWMAPEVIHSY  185 (272)
T ss_pred             CHHHHHHHHHHHHHHHHHHhhCCeeecCCChhhEEEcCCCeEEEeeccccccccccccccccccccCCccccCHHHhccc
Confidence                   2467888999999999999999999999999999999999999865432211122345688999999988765


Q ss_pred             c--cccccceehhhhhhccccCCCCCcCCC
Q 045449          751 R--VSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       751 ~--~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      .  ++.++||||+||+++++.+|..|+...
T Consensus       186 ~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~  215 (272)
T cd06629         186 SQGYSAKVDIWSLGCVVLEMFAGRRPWSDE  215 (272)
T ss_pred             cCCCCccchhHHHHHHHHHHHhCCCCCcCc
Confidence            4  789999999999999999999998643

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell inte

>cd08224 STKc_Nek6_Nek7 Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7

Probab=99.79  E-value=5.4e-20  Score=193.81  Aligned_cols=149  Identities=24%  Similarity=0.334  Sum_probs=121.6

Q ss_pred             ccCCccceeeccC------------CeEEEEEEehHh---hHHHHHHHHHHHHHHhhcchhhHHH---------------
Q 045449          628 DRFSENNLIGIGN------------GMEVAVKVFHQQ---YERALKSFEDECEVRKRIRHRNLVK---------------  677 (823)
Q Consensus       628 ~~f~~~~~lg~g~------------~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~---------------  677 (823)
                      ++|...+.+|.|+            |..||+|.++..   .....+.+.+|++++++++|+|+++               
T Consensus         2 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~ei~~l~~~~~~~i~~~~~~~~~~~~~~lv~   81 (267)
T cd08224           2 GNFKIEKKIGKGQFSVVYKAICLLDGRVVALKKVQIFEMMDAKARQDCLKEIDLLKQLDHPNVIKYLASFIENNELNIVL   81 (267)
T ss_pred             CceeeeeeeccCCceEEEEEEEcCCCCEEEEEEeecccccchhhHHHHHHHHHHHHhCCCCCeeeeeeeeecCCeEEEEE
Confidence            4566666777664            677999988532   2334578999999999999999987               


Q ss_pred             -----------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCc
Q 045449          678 -----------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQ  728 (823)
Q Consensus       678 -----------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~  728 (823)
                                                   ++.+++.+|.++|+.|++||||||+||+++.++.++++|||+++.......
T Consensus        82 e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~i~h~dl~p~nil~~~~~~~~l~d~~~~~~~~~~~~  161 (267)
T cd08224          82 ELADAGDLSRMIKHFKKQKRLIPERTIWKYFVQLCSALEHMHSKRIMHRDIKPANVFITATGVVKLGDLGLGRFFSSKTT  161 (267)
T ss_pred             ecCCCCCHHHHHHHhcccCCCcCHHHHHHHHHHHHHHHHHHHhCCEecCCcChhhEEECCCCcEEEeccceeeeccCCCc
Confidence                                         245778889999999999999999999999999999999999886543221


Q ss_pred             cccccccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCC
Q 045449          729 LSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       729 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                        ......|++.|+|||+..+..++.++|||||||+++++.+|..||...
T Consensus       162 --~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~  209 (267)
T cd08224         162 --AAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGD  209 (267)
T ss_pred             --ccceecCCccccCHHHhccCCCCchhcHHHHHHHHHHHHHCCCCcccC
Confidence              122346889999999998888999999999999999999999998553

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may a

>cd05098 PTKc_FGFR1 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1

Probab=99.79  E-value=2.8e-20  Score=200.56  Aligned_cols=151  Identities=30%  Similarity=0.363  Sum_probs=118.1

Q ss_pred             ccCCccceeeccC-------------------CeEEEEEEehHhh-HHHHHHHHHHHHHHhhc-chhhHHH---------
Q 045449          628 DRFSENNLIGIGN-------------------GMEVAVKVFHQQY-ERALKSFEDECEVRKRI-RHRNLVK---------  677 (823)
Q Consensus       628 ~~f~~~~~lg~g~-------------------~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l-~h~niv~---------  677 (823)
                      ++|...+.||+|+                   ...||+|++.... ....+++.+|++++.++ +|+||++         
T Consensus        18 ~~~~i~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~   97 (307)
T cd05098          18 DRLVLGKPLGEGCFGQVVMAEAIGLDKEKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDG   97 (307)
T ss_pred             HHeEEeeeeccCCCeeEEEeEEeccCCcccCccceEEEEeccCCCChHHHHHHHHHHHHHHHhcCCCCEeeEEEEEecCC
Confidence            4566667777765                   1248889887542 34456788999999999 7999887         


Q ss_pred             -----------------------------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCC
Q 045449          678 -----------------------------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDM  710 (823)
Q Consensus       678 -----------------------------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~  710 (823)
                                                                     ++.|++.+|+|+|+.+++||||||+||+++.++
T Consensus        98 ~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~lH~~gi~H~dlkp~Nill~~~~  177 (307)
T cd05098          98 PLYVIVEYASKGNLREYLRARRPPGMEYCYNPTQVPEEQLSFKDLVSCAYQVARGMEYLASKKCIHRDLAARNVLVTEDN  177 (307)
T ss_pred             ceEEEEecCCCCcHHHHHHhcCCcccccccccccCccccCCHHHHHHHHHHHHHHHHHHHHCCcccccccHHheEEcCCC
Confidence                                                           134677889999999999999999999999999


Q ss_pred             cEEEeecccccccCCCCccccccccccCCCcCcccccCCCccccccceehhhhhhccccC-CCCCcCCC
Q 045449          711 VAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKET-RSMTVGET  778 (823)
Q Consensus       711 ~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~-~~~~~~~~  778 (823)
                      .+||+|||.++...............+++.|+|||++.+..++.++||||+||++|++.+ |..||...
T Consensus       178 ~~kL~dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~~~g~~p~~~~  246 (307)
T cd05098         178 VMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGV  246 (307)
T ss_pred             cEEECCCcccccccccchhhccccCCCccceeChHHhccCCCCcHHHHHHHHHHHHHHHcCCCCCCCcC
Confidence            999999999986543222111222334578999999988889999999999999999998 77787654

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05100 PTKc_FGFR3 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3

Probab=99.79  E-value=5.3e-20  Score=200.84  Aligned_cols=136  Identities=29%  Similarity=0.378  Sum_probs=110.1

Q ss_pred             EEEEEEehHhh-HHHHHHHHHHHHHHhhc-chhhHHHH------------------------------------------
Q 045449          643 EVAVKVFHQQY-ERALKSFEDECEVRKRI-RHRNLVKI------------------------------------------  678 (823)
Q Consensus       643 ~vavK~~~~~~-~~~~~~~~~E~~~l~~l-~h~niv~~------------------------------------------  678 (823)
                      .||+|.+.... ....+++.+|+++++++ +||||+++                                          
T Consensus        46 ~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~  125 (334)
T cd05100          46 TVAVKMLKDDATDKDLSDLVSEMEMMKMIGKHKNIINLLGACTQDGPLYVLVEYASKGNLREYLRARRPPGMDYSFDTCK  125 (334)
T ss_pred             eEEEEEcccccCHHHHHHHHHHHHHHHhhcCCCCeeeeeEEEccCCceEEEEecCCCCcHHHHHHhcCCccccccccccc
Confidence            58999887432 34557899999999999 89999971                                          


Q ss_pred             --------------HHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcc
Q 045449          679 --------------ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAP  744 (823)
Q Consensus       679 --------------~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aP  744 (823)
                                    +.|++++|.|+|+.+++||||||+||+++.++.+||+|||+++...............++..|+||
T Consensus       126 ~~~~~l~~~~~~~~~~qi~~al~~LH~~givH~dlkp~Nill~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aP  205 (334)
T cd05100         126 LPEEQLTFKDLVSCAYQVARGMEYLASQKCIHRDLAARNVLVTEDNVMKIADFGLARDVHNIDYYKKTTNGRLPVKWMAP  205 (334)
T ss_pred             CccccCCHHHHHHHHHHHHHHHHHHHHCCeeccccccceEEEcCCCcEEECCcccceecccccccccccCCCcCceEcCH
Confidence                          237788899999999999999999999999999999999999876433222112223446789999


Q ss_pred             cccCCCccccccceehhhhhhccccC-CCCCcCCC
Q 045449          745 EYGTKGRVSTRGDVCSFGIISGGKET-RSMTVGET  778 (823)
Q Consensus       745 E~~~~~~~~~~~Dv~S~Gvv~~~~~~-~~~~~~~~  778 (823)
                      |++.+..++.++|||||||+++++.+ |..||.+.
T Consensus       206 E~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~  240 (334)
T cd05100         206 EALFDRVYTHQSDVWSFGVLLWEIFTLGGSPYPGI  240 (334)
T ss_pred             HHhccCCcCchhhhHHHHHHHHHHHhcCCCCCCCC
Confidence            99998899999999999999999987 77777654

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05107 PTKc_PDGFR_beta Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta

Probab=99.79  E-value=3.4e-20  Score=205.93  Aligned_cols=98  Identities=29%  Similarity=0.324  Sum_probs=81.9

Q ss_pred             HHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccCCCccccccceeh
Q 045449          681 SSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCS  760 (823)
Q Consensus       681 ~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S  760 (823)
                      |++.+|.|+|+.+++||||||+|||+++++.+||+|||+++...............+++.|+|||++.+..++.++||||
T Consensus       247 qi~~aL~~LH~~~ivHrdlkp~NiLl~~~~~~kL~DfGla~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dvws  326 (401)
T cd05107         247 QVANGMEFLASKNCVHRDLAARNVLICEGKLVKICDFGLARDIMRDSNYISKGSTFLPLKWMAPESIFNNLYTTLSDVWS  326 (401)
T ss_pred             HHHHHHHHHhcCCcCcccCCcceEEEeCCCEEEEEecCcceecccccccccCCCcCCCCceeChHHhcCCCCCcHhHHHH
Confidence            67788999999999999999999999999999999999998654322211222345788999999998888999999999


Q ss_pred             hhhhhccccC-CCCCcCCC
Q 045449          761 FGIISGGKET-RSMTVGET  778 (823)
Q Consensus       761 ~Gvv~~~~~~-~~~~~~~~  778 (823)
                      |||+++++++ |..||...
T Consensus       327 lGvil~e~l~~g~~P~~~~  345 (401)
T cd05107         327 FGILLWEIFTLGGTPYPEL  345 (401)
T ss_pred             HHHHHHHHHHcCCCCCCCC
Confidence            9999999997 78887654

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-D

>cd06647 STKc_PAK_I Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase

Probab=99.79  E-value=7.4e-20  Score=195.78  Aligned_cols=136  Identities=29%  Similarity=0.384  Sum_probs=115.2

Q ss_pred             CeEEEEEEehHhhHHHHHHHHHHHHHHhhcchhhHHH---------------------------------------HHHH
Q 045449          641 GMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVK---------------------------------------IISS  681 (823)
Q Consensus       641 ~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~---------------------------------------~~~~  681 (823)
                      +..||+|.+........+.+.+|+.++++++|||+++                                       ++.+
T Consensus        44 ~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~l~~~~~~~i~~~  123 (293)
T cd06647          44 GQEVAIKQMNLQQQPKKELIINEILVMRENKHPNIVNYLDSYLVGDELWVVMEYLAGGSLTDVVTETCMDEGQIAAVCRE  123 (293)
T ss_pred             CCEEEEEEeccccchHHHHHHHHHHHHhhcCCCCeeehhheeeeCCcEEEEEecCCCCcHHHHHhhcCCCHHHHHHHHHH
Confidence            5679999987555455578999999999999999998                                       2457


Q ss_pred             HHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccCCCccccccceehh
Q 045449          682 SLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSF  761 (823)
Q Consensus       682 ~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~  761 (823)
                      ++.+|.|+|+.+++|||+||+||+++.++.+||+|||++........  ......|++.|+|||+.....++.++|||||
T Consensus       124 l~~al~~LH~~gi~H~dL~p~Nili~~~~~~kL~dfg~~~~~~~~~~--~~~~~~~~~~y~~PE~~~~~~~~~~~Dv~sl  201 (293)
T cd06647         124 CLQALEFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQS--KRSTMVGTPYWMAPEVVTRKAYGPKVDIWSL  201 (293)
T ss_pred             HHHHHHHHHhCCEeeccCCHHHEEEcCCCCEEEccCcceeccccccc--ccccccCChhhcCchhhccCCCCchhhHHHH
Confidence            88899999999999999999999999999999999999876543322  1233468899999999988889999999999


Q ss_pred             hhhhccccCCCCCcCCC
Q 045449          762 GIISGGKETRSMTVGET  778 (823)
Q Consensus       762 Gvv~~~~~~~~~~~~~~  778 (823)
                      ||+++++.+|..||...
T Consensus       202 G~ll~~ll~g~~pf~~~  218 (293)
T cd06647         202 GIMAIEMVEGEPPYLNE  218 (293)
T ss_pred             HHHHHHHHhCCCCCCCC
Confidence            99999999999998653

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their bi

>cd07842 STKc_CDK8_like Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases

Probab=99.79  E-value=5e-20  Score=199.36  Aligned_cols=139  Identities=27%  Similarity=0.339  Sum_probs=114.2

Q ss_pred             CeEEEEEEehHhh---HHHHHHHHHHHHHHhhcchhhHHH----------------------------------------
Q 045449          641 GMEVAVKVFHQQY---ERALKSFEDECEVRKRIRHRNLVK----------------------------------------  677 (823)
Q Consensus       641 ~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~----------------------------------------  677 (823)
                      +..||+|++....   ....+.+.+|++++++++||||++                                        
T Consensus        27 ~~~~alK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~  106 (316)
T cd07842          27 GKEYAIKKFKGDKEQYTGISQSACREIALLRELKHENVVSLVEVFLEHADKSVYLLFDYAEHDLWQIIKFHRQAKRVSIP  106 (316)
T ss_pred             CCeEEEEEeccccccccCccHHHHHHHHHHHhcCCCCccceEEEEeCCCCceEEEEEeCCCcCHHHHHHhhccCCCcCcC
Confidence            5789999997632   333467889999999999999998                                        


Q ss_pred             ------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCC----CCcEEEeecccccccCCCCc-cccccccccCCCcCcccc
Q 045449          678 ------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDE----DMVAHISDFGIAKLLSGEDQ-LSKQTQTLATIGYMAPEY  746 (823)
Q Consensus       678 ------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~----~~~~kl~DfGla~~~~~~~~-~~~~~~~~gt~~y~aPE~  746 (823)
                            ++.|++.+|+|+|+.+|+||||||+||+++.    ++.+||+|||+++....... ........+++.|+|||+
T Consensus       107 ~~~~~~i~~qi~~~l~~lH~~~i~h~dlkp~Nil~~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~  186 (316)
T cd07842         107 PSMVKSLLWQILNGVHYLHSNWVLHRDLKPANILVMGEGPERGVVKIGDLGLARLFNAPLKPLADLDPVVVTIWYRAPEL  186 (316)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCEeeCCCCHHHEEEcCCCCccceEEECCCccccccCCCcccccccCCccccccccCHHH
Confidence                  2468899999999999999999999999999    89999999999987643322 112234568899999998


Q ss_pred             cCCC-ccccccceehhhhhhccccCCCCCcCCCc
Q 045449          747 GTKG-RVSTRGDVCSFGIISGGKETRSMTVGETC  779 (823)
Q Consensus       747 ~~~~-~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~~  779 (823)
                      +.+. .++.++|||||||+++++.+|..||.+..
T Consensus       187 ~~~~~~~~~~~Dv~slG~~l~~l~~~~~~~~~~~  220 (316)
T cd07842         187 LLGARHYTKAIDIWAIGCIFAELLTLEPIFKGRE  220 (316)
T ss_pred             HhCCCCCCcHHHHHHHHHHHHHHHhcCCCCcCCc
Confidence            7664 57899999999999999999999987543

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the

>cd07833 STKc_CDKL Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

Probab=99.79  E-value=6.6e-20  Score=195.54  Aligned_cols=148  Identities=31%  Similarity=0.404  Sum_probs=121.1

Q ss_pred             cCCccceeeccC------------CeEEEEEEehHhh--HHHHHHHHHHHHHHhhcchhhHHH-----------------
Q 045449          629 RFSENNLIGIGN------------GMEVAVKVFHQQY--ERALKSFEDECEVRKRIRHRNLVK-----------------  677 (823)
Q Consensus       629 ~f~~~~~lg~g~------------~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~-----------------  677 (823)
                      +|+..+.||.|+            +..||||+++...  ....+.+.+|++++++++|+||++                 
T Consensus         2 ~y~~~~~i~~g~~~~v~~~~~~~~~~~v~vK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~iv~e~   81 (288)
T cd07833           2 KYEVLGVVGEGAYGVVLKCRNKATGEIVAIKKFKESEDDEDVKKTALREVKVLRQLRHENIVNLKEAFRRKGRLYLVFEY   81 (288)
T ss_pred             ceeEEEEecccCCeeEEEEEeCCCCcEEEEehhhhhcccccchhHHHHHHHHHHhcCCCCeeehhheEEECCEEEEEEec
Confidence            455555566553            5679999886542  334578999999999999999998                 


Q ss_pred             -----------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccc
Q 045449          678 -----------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQ  734 (823)
Q Consensus       678 -----------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~  734 (823)
                                             ++.|++.+|+|+|..+++|||++|+||++++++.+||+|||+++....... .....
T Consensus        82 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~i~H~dl~~~ni~~~~~~~~kl~d~g~~~~~~~~~~-~~~~~  160 (288)
T cd07833          82 VERTLLELLEASPGGLPPDAVRSYIWQLLQAIAYCHSHNIIHRDIKPENILVSESGVLKLCDFGFARALRARPA-SPLTD  160 (288)
T ss_pred             CCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeEECCCCCEEEEeeecccccCCCcc-ccccC
Confidence                                   356788899999999999999999999999999999999999987654332 12234


Q ss_pred             cccCCCcCcccccCCC-ccccccceehhhhhhccccCCCCCcCC
Q 045449          735 TLATIGYMAPEYGTKG-RVSTRGDVCSFGIISGGKETRSMTVGE  777 (823)
Q Consensus       735 ~~gt~~y~aPE~~~~~-~~~~~~Dv~S~Gvv~~~~~~~~~~~~~  777 (823)
                      ..++..|+|||++.+. .++.++|||||||+++++.+|..||..
T Consensus       161 ~~~~~~~~~PE~~~~~~~~~~~~Dv~slG~~l~~l~~g~~~~~~  204 (288)
T cd07833         161 YVATRWYRAPELLVGDTNYGKPVDVWAIGCIMAELLDGEPLFPG  204 (288)
T ss_pred             cccccCCcCCchhcCCCCcCchhhHHHHHHHHHHHHhCCCCCCC
Confidence            5688999999998887 789999999999999999999988864

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning

>cd06622 PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases

Probab=99.79  E-value=1.1e-19  Score=193.63  Aligned_cols=133  Identities=23%  Similarity=0.319  Sum_probs=109.2

Q ss_pred             CeEEEEEEehHh-hHHHHHHHHHHHHHHhhcchhhHHHH-----------------------------------------
Q 045449          641 GMEVAVKVFHQQ-YERALKSFEDECEVRKRIRHRNLVKI-----------------------------------------  678 (823)
Q Consensus       641 ~~~vavK~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~~-----------------------------------------  678 (823)
                      +..||+|.+... .....+.+.+|++++.+++|+||+++                                         
T Consensus        26 ~~~~a~k~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~  105 (286)
T cd06622          26 GVTMAMKEIRLELDESKFNQIIMELDILHKAVSPYIVDFYGAFFIEGAVYMCMEYMDAGSLDKLYAGGVATEGIPEDVLR  105 (286)
T ss_pred             CcEEEEEEeecccCHHHHHHHHHHHHHHHhcCCCcHHhhhhheecCCeEEEEEeecCCCCHHHHHHhccccCCCCHHHHH
Confidence            678999988653 23445789999999999999999982                                         


Q ss_pred             --HHHHHHHhhhcCC-CCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccCCC-----
Q 045449          679 --ISSSLEYLHFGHS-IPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKG-----  750 (823)
Q Consensus       679 --~~~~l~~L~~~h~-~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-----  750 (823)
                        +.+++.+|.|+|+ .+|+||||||+||+++.++.+||+|||+++......    .....|++.|+|||++.+.     
T Consensus       106 ~~~~~i~~~l~~LH~~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~----~~~~~~~~~y~aPE~~~~~~~~~~  181 (286)
T cd06622         106 RITYAVVKGLKFLKEEHNIIHRDVKPTNVLVNGNGQVKLCDFGVSGNLVASL----AKTNIGCQSYMAPERIKSGGPNQN  181 (286)
T ss_pred             HHHHHHHHHHHHHHhcCCEeeCCCCHHHEEECCCCCEEEeecCCcccccCCc----cccCCCccCccCcchhcCCCCCcc
Confidence              4567778888885 699999999999999999999999999997653221    2234688899999987544     


Q ss_pred             -ccccccceehhhhhhccccCCCCCcCC
Q 045449          751 -RVSTRGDVCSFGIISGGKETRSMTVGE  777 (823)
Q Consensus       751 -~~~~~~Dv~S~Gvv~~~~~~~~~~~~~  777 (823)
                       .++.++||||+||+++++.+|..||..
T Consensus       182 ~~~~~~~DiwslG~il~~l~~g~~pf~~  209 (286)
T cd06622         182 PTYTVQSDVWSLGLSILEMALGRYPYPP  209 (286)
T ss_pred             CCCCcccchHhHHHHHHHHHhCCCCCCC
Confidence             358899999999999999999999865

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.79  E-value=8e-21  Score=205.94  Aligned_cols=281  Identities=20%  Similarity=0.233  Sum_probs=151.0

Q ss_pred             hhcccccccc-CCccccccCCCCCcEEEccCCccccc----CCcccccCCCCccEEEeecccccc------ccCccccCC
Q 045449          208 RLALATNNLV-GVVPVTIFNMSALKEISLLNNSLSGS----LPSRIDLSLPNVETLNLGINSFSG------TIPSSITNS  276 (823)
Q Consensus       208 ~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~g~----lp~~~~~~l~~L~~L~Ls~N~l~~------~~p~~~~~l  276 (823)
                      .|+|..+.++ ...+..+..+.+|+.|+++++.++..    ++..+. ..++|++|+++.+.+.+      .++..+..+
T Consensus         2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~-~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~   80 (319)
T cd00116           2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALR-PQPSLKELCLSLNETGRIPRGLQSLLQGLTKG   80 (319)
T ss_pred             ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHh-hCCCceEEeccccccCCcchHHHHHHHHHHhc
Confidence            3556666665 23344445566677777777766422    232322 25556677776666552      233445556


Q ss_pred             CCCCeEEeecccccccCCCccCCCcc---cCcccccCccccCCCCcccccccccCC-CCceEEEeecCCCCccCCccccc
Q 045449          277 SKLSDLELGENLFSGFIPNTIGNLRN---LEFGNIADNYLTSSTPELSFLSSLTNC-KKLKVLIVTGNPLDGILPKSIGN  352 (823)
Q Consensus       277 ~~L~~L~Ls~N~l~~~~p~~~~~l~~---L~~L~L~~N~l~~~~~~~~~~~~l~~l-~~L~~L~Ls~N~l~~~~p~~~~~  352 (823)
                      ++|+.|++++|.+.+..+..+..+..   |++|++++|++++.... .+...+..+ ++|+.|++++|.+++....    
T Consensus        81 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~-~l~~~l~~~~~~L~~L~L~~n~l~~~~~~----  155 (319)
T cd00116          81 CGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLR-LLAKGLKDLPPALEKLVLGRNRLEGASCE----  155 (319)
T ss_pred             CceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHH-HHHHHHHhCCCCceEEEcCCCcCCchHHH----
Confidence            66666666666665544444444333   55555555555432110 012223333 4455555555554432111    


Q ss_pred             cccccceEEecCCcceeccCccccCcccccEEEcccCcCCCC----chhcccccCCCCEEEccCCCCCCcc----hHhhh
Q 045449          353 FSLSLETILMANCSISGNIPQVVGNLSNLLVLELGGNNLTGP----IPVTFSQLQTLQAFDLTRNKLAGPI----TDELC  424 (823)
Q Consensus       353 ~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~----~p~~~~~l~~L~~L~Ls~N~l~~~~----p~~~~  424 (823)
                                       .++..+..+++|++|++++|.+++.    ++..+..+++|++|+|++|.+++..    ...+.
T Consensus       156 -----------------~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~  218 (319)
T cd00116         156 -----------------ALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLA  218 (319)
T ss_pred             -----------------HHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhc
Confidence                             1223344455666666666666632    2233444456777777777665432    22344


Q ss_pred             cCCCCCEEEcccCcCccccccccc-----CCCCCCeEeccCCcccc----ccchhhhccCCCcEEeccccccccc----c
Q 045449          425 HLARLHSLVLQGNKFSGSIPSCLG-----NLTSVRVLYLGLNIFTS----VLSSTIWNLKDILFIDVSSNFLDGP----L  491 (823)
Q Consensus       425 ~l~~L~~L~Ls~N~l~g~~p~~~~-----~l~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~LdLs~N~l~g~----~  491 (823)
                      .+++|++|++++|.+++.....+.     ..+.|+.|++++|.++.    .+...+..+++|+++|+++|.++..    +
T Consensus       219 ~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~  298 (319)
T cd00116         219 SLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLL  298 (319)
T ss_pred             ccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHH
Confidence            556677777777776643222221     23567777777777762    2334455567777777777777744    4


Q ss_pred             CccccCC-CCCcEEEcccCCC
Q 045449          492 SLDIGNL-KVVIGLDFSRNNL  511 (823)
Q Consensus       492 p~~~~~l-~~L~~L~ls~N~l  511 (823)
                      ...+... ..|++||+.+|.+
T Consensus       299 ~~~~~~~~~~~~~~~~~~~~~  319 (319)
T cd00116         299 AESLLEPGNELESLWVKDDSF  319 (319)
T ss_pred             HHHHhhcCCchhhcccCCCCC
Confidence            4444444 6777777777754

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd07855 STKc_ERK5 Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5

Probab=99.79  E-value=6.6e-20  Score=200.11  Aligned_cols=150  Identities=31%  Similarity=0.383  Sum_probs=120.6

Q ss_pred             ccCCccceeeccC------------CeEEEEEEehHhh--HHHHHHHHHHHHHHhhcchhhHHH----------------
Q 045449          628 DRFSENNLIGIGN------------GMEVAVKVFHQQY--ERALKSFEDECEVRKRIRHRNLVK----------------  677 (823)
Q Consensus       628 ~~f~~~~~lg~g~------------~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~----------------  677 (823)
                      ++|...+.||.|+            +..||+|++....  ....+.+.+|+.++++++||||++                
T Consensus         5 ~~y~~~~~lg~g~~g~v~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~   84 (334)
T cd07855           5 SRYKPIENIGSGAYGVVCSAIDTRSGKKVAIKKIPHAFDVPTLAKRTLRELKILRHFKHDNIIAIRDILRPPGADFKDVY   84 (334)
T ss_pred             hceeeeeeeecCCCeEEEEEEEcCCCCEEEEEEeccccccccchHHHHHHHHHHHhcCCCCccCHHHhccccCCCCceEE
Confidence            5666666777664            5679999987543  234467888999999999999986                


Q ss_pred             ---------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCcc-
Q 045449          678 ---------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQL-  729 (823)
Q Consensus       678 ---------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~-  729 (823)
                                                 ++.|++.+|.|+|+.+|+||||||+||+++.++.+||+|||+++........ 
T Consensus        85 lv~e~~~~~l~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~~~~~  164 (334)
T cd07855          85 VVMDLMESDLHHIIHSDQPLTEEHIRYFLYQLLRGLKYIHSANVIHRDLKPSNLLVNEDCELRIGDFGMARGLSSSPTEH  164 (334)
T ss_pred             EEEehhhhhHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEEcCCCcEEecccccceeecccCcCC
Confidence                                       2457888999999999999999999999999999999999999875432211 


Q ss_pred             -ccccccccCCCcCcccccCC-CccccccceehhhhhhccccCCCCCcCC
Q 045449          730 -SKQTQTLATIGYMAPEYGTK-GRVSTRGDVCSFGIISGGKETRSMTVGE  777 (823)
Q Consensus       730 -~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~  777 (823)
                       .......|+..|+|||++.. ..++.++|||||||++|++.+|..||.+
T Consensus       165 ~~~~~~~~~~~~y~~PE~~~~~~~~~~~~Di~slG~~l~el~~g~~pf~~  214 (334)
T cd07855         165 KYFMTEYVATRWYRAPELLLSLPEYTTAIDMWSVGCIFAEMLGRRQLFPG  214 (334)
T ss_pred             CcccccccccccccChHHhcCCcccccccchHHHHHHHHHHHcCCCccCC
Confidence             11123578999999998765 4589999999999999999999999865

Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the

>cd07844 STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like Serine/Threonine Kinases

Probab=99.79  E-value=4.9e-20  Score=196.99  Aligned_cols=149  Identities=26%  Similarity=0.324  Sum_probs=119.1

Q ss_pred             ccCCccceeeccC------------CeEEEEEEehHhhH-HHHHHHHHHHHHHhhcchhhHHH-----------------
Q 045449          628 DRFSENNLIGIGN------------GMEVAVKVFHQQYE-RALKSFEDECEVRKRIRHRNLVK-----------------  677 (823)
Q Consensus       628 ~~f~~~~~lg~g~------------~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~-----------------  677 (823)
                      ++|...+.+|.|+            +..||||.+..... .....+.+|++++++++|+||++                 
T Consensus         5 ~~y~~~~~lg~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   84 (291)
T cd07844           5 ETYKKLDKLGEGSYATVYKGRSKLTGQLVALKEIRLEHEEGAPFTAIREASLLKDLKHANIVTLHDIIHTKKTLTLVFEY   84 (291)
T ss_pred             cceeEEEEEeecCCeEEEEEEEcCCCcEEEEEEEecccccCCchhHHHHHHHHhhCCCcceeeEEEEEecCCeEEEEEec
Confidence            4566667777764            57799999865432 22345778999999999999998                 


Q ss_pred             -----------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccc
Q 045449          678 -----------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQ  734 (823)
Q Consensus       678 -----------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~  734 (823)
                                             ++.|++++|.|+|+.+|+||||||+||+++.++.+||+|||+++.......  ....
T Consensus        85 ~~~~L~~~~~~~~~~~~~~~~~~~~~ql~~al~~lH~~~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~~~~--~~~~  162 (291)
T cd07844          85 LDTDLKQYMDDCGGGLSMHNVRLFLFQLLRGLAYCHQRRVLHRDLKPQNLLISERGELKLADFGLARAKSVPSK--TYSN  162 (291)
T ss_pred             CCCCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhCCeecccCCHHHEEEcCCCCEEECccccccccCCCCc--cccc
Confidence                                   356889999999999999999999999999999999999999875432211  1122


Q ss_pred             cccCCCcCcccccCC-CccccccceehhhhhhccccCCCCCcCCC
Q 045449          735 TLATIGYMAPEYGTK-GRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       735 ~~gt~~y~aPE~~~~-~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      ..++..|+|||+..+ ..++.++||||+||+++++.+|..||.+.
T Consensus       163 ~~~~~~~~aPE~~~~~~~~~~~~Dv~slG~il~~l~~g~~~~~~~  207 (291)
T cd07844         163 EVVTLWYRPPDVLLGSTEYSTSLDMWGVGCIFYEMATGRPLFPGS  207 (291)
T ss_pred             cccccccCCcHHhhcCcccCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence            357889999998765 45789999999999999999999998654

Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as the

>cd08227 PK_STRAD_alpha Pseudokinase domain of STE20-related kinase adapter protein alpha

Probab=99.79  E-value=8.3e-20  Score=198.66  Aligned_cols=139  Identities=19%  Similarity=0.277  Sum_probs=110.6

Q ss_pred             CCeEEEEEEehHhh--HHHHHHHHHHHHHHhhcchhhHHH----------------------------------------
Q 045449          640 NGMEVAVKVFHQQY--ERALKSFEDECEVRKRIRHRNLVK----------------------------------------  677 (823)
Q Consensus       640 ~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~----------------------------------------  677 (823)
                      .|..||||++....  ....+.+.+|+++++.++||||++                                        
T Consensus        24 ~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~l~~~~~  103 (327)
T cd08227          24 TGEYVTVRRINLEACTNEMVTFLQGELHVSKLFNHPNIVPYRATFIADNELWVVTSFMAYGSAKDLICTHFMDGMSELAI  103 (327)
T ss_pred             cCcEEEEEEechhhccHHHHHHHHHHHHHHHhcCCCCeeeEEEEEEECCEEEEEEeccCCCcHHHHHHhhccCCCCHHHH
Confidence            36779999997543  334467788999999999999998                                        


Q ss_pred             --HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCcc-----ccccccccCCCcCcccccCC-
Q 045449          678 --IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQL-----SKQTQTLATIGYMAPEYGTK-  749 (823)
Q Consensus       678 --~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~-----~~~~~~~gt~~y~aPE~~~~-  749 (823)
                        ++.|++.+|.|+|+.+|+||||||+||+++.++.++++|||.+.........     .......++..|+|||++.+ 
T Consensus       104 ~~i~~qi~~~L~~LH~~~iiH~dlkp~Nil~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~  183 (327)
T cd08227         104 AYILQGVLKALDYIHHMGYVHRSVKASHILISVDGKVYLSGLRSNLSMINHGQRLRVVHDFPKYSVKVLPWLSPEVLQQN  183 (327)
T ss_pred             HHHHHHHHHHHHHHHHCCEecCCCChhhEEEecCCcEEEcccchhhccccccccccccccccccccceecccChHHhhcc
Confidence              3467888999999999999999999999999999999999865443211110     01122356788999999876 


Q ss_pred             -CccccccceehhhhhhccccCCCCCcCCC
Q 045449          750 -GRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       750 -~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                       ..++.++|||||||+++++.+|..||.+.
T Consensus       184 ~~~~~~~~DiwslG~il~el~~g~~pf~~~  213 (327)
T cd08227         184 LQGYDAKSDIYSVGITACELANGHVPFKDM  213 (327)
T ss_pred             cCCCCchhhHHHHHHHHHHHHHCCCCCCCc
Confidence             45899999999999999999999999753

Protein Kinase family, STE20-related kinase adapter protein (STRAD) alpha subfamily, pseudokinase domain. The STRAD alpha subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hype

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.79  E-value=1.1e-20  Score=204.80  Aligned_cols=260  Identities=22%  Similarity=0.268  Sum_probs=174.5

Q ss_pred             EEEccCCcccccCCcccccCCCCccEEEeeccccccc----cCccccCCCCCCeEEeecccccccCCCccCCCcccCccc
Q 045449          232 EISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGT----IPSSITNSSKLSDLELGENLFSGFIPNTIGNLRNLEFGN  307 (823)
Q Consensus       232 ~L~Ls~N~l~g~lp~~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  307 (823)
                      .|+|..+.+++.--..++..+.+|++|+++++.++..    ++..+...++|+.|+++++.+.+. +..           
T Consensus         2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~-~~~-----------   69 (319)
T cd00116           2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRI-PRG-----------   69 (319)
T ss_pred             ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCc-chH-----------
Confidence            3566666665322222222355566666666665321    334444455555565555554420 000           


Q ss_pred             ccCccccCCCCcccccccccCCCCceEEEeecCCCCccCCcccccccc--ccceEEecCCccee----ccCccccCc-cc
Q 045449          308 IADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGILPKSIGNFSL--SLETILMANCSISG----NIPQVVGNL-SN  380 (823)
Q Consensus       308 L~~N~l~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~--~L~~L~L~~N~l~~----~~p~~~~~l-~~  380 (823)
                                 ....+..+..+++|+.|++++|.+.+..+..+..+..  +|++|++++|++++    .+...+..+ ++
T Consensus        70 -----------~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~  138 (319)
T cd00116          70 -----------LQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPA  138 (319)
T ss_pred             -----------HHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCC
Confidence                       0012334555677777777777776655555555421  27888888887763    233445566 89


Q ss_pred             ccEEEcccCcCCCC----chhcccccCCCCEEEccCCCCCCc----chHhhhcCCCCCEEEcccCcCccc----cccccc
Q 045449          381 LLVLELGGNNLTGP----IPVTFSQLQTLQAFDLTRNKLAGP----ITDELCHLARLHSLVLQGNKFSGS----IPSCLG  448 (823)
Q Consensus       381 L~~L~Ls~N~l~g~----~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~g~----~p~~~~  448 (823)
                      |+.|++++|.+++.    ++..+..+.+|++|++++|.+++.    ++..+..+++|+.|+|++|.+++.    ++..+.
T Consensus       139 L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~  218 (319)
T cd00116         139 LEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLA  218 (319)
T ss_pred             ceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhc
Confidence            99999999999954    344567778999999999999953    344456667999999999999754    345567


Q ss_pred             CCCCCCeEeccCCccccccchhhhc-----cCCCcEEeccccccc----cccCccccCCCCCcEEEcccCCCCCC
Q 045449          449 NLTSVRVLYLGLNIFTSVLSSTIWN-----LKDILFIDVSSNFLD----GPLSLDIGNLKVVIGLDFSRNNLSGD  514 (823)
Q Consensus       449 ~l~~L~~L~Ls~N~l~~~~p~~~~~-----l~~L~~LdLs~N~l~----g~~p~~~~~l~~L~~L~ls~N~l~g~  514 (823)
                      .+++|++|++++|.+++.....+..     .+.|+.|++++|.++    ..+...+..++.|+++|+++|.++..
T Consensus       219 ~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~  293 (319)
T cd00116         219 SLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEE  293 (319)
T ss_pred             ccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHH
Confidence            7899999999999999754544433     379999999999997    23455677779999999999999843

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd07847 STKc_CDKL1_4 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4

Probab=99.79  E-value=6.3e-20  Score=195.51  Aligned_cols=136  Identities=30%  Similarity=0.367  Sum_probs=112.6

Q ss_pred             CeEEEEEEehHhh--HHHHHHHHHHHHHHhhcchhhHHH----------------------------------------H
Q 045449          641 GMEVAVKVFHQQY--ERALKSFEDECEVRKRIRHRNLVK----------------------------------------I  678 (823)
Q Consensus       641 ~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~----------------------------------------~  678 (823)
                      +..||+|++....  ....+.+.+|++++++++|+|+++                                        +
T Consensus        26 ~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~~v~e~~~~~~l~~~~~~~~~~~~~~~~~~  105 (286)
T cd07847          26 GQIVAIKKFVESEDDPVIKKIALREIRMLKQLKHPNLVNLIEVFRRKRKLHLVFEYCDHTVLNELEKNPRGVPEHLIKKI  105 (286)
T ss_pred             CcEEEEEEEeecccCccccHHHHHHHHHHHhCCCCCEeeeeeEEeeCCEEEEEEeccCccHHHHHHhCCCCCCHHHHHHH
Confidence            5779999886432  223356889999999999999998                                        3


Q ss_pred             HHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccCC-Cccccccc
Q 045449          679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTK-GRVSTRGD  757 (823)
Q Consensus       679 ~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~D  757 (823)
                      +.|++++|.|+|+.+++||||||+||+++.++.+||+|||++........  ......++..|+|||++.+ ..++.++|
T Consensus       106 ~~ql~~~l~~LH~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~--~~~~~~~~~~~~aPE~~~~~~~~~~~~D  183 (286)
T cd07847         106 IWQTLQAVNFCHKHNCIHRDVKPENILITKQGQIKLCDFGFARILTGPGD--DYTDYVATRWYRAPELLVGDTQYGPPVD  183 (286)
T ss_pred             HHHHHHHHHHHHHCCceecCCChhhEEEcCCCcEEECccccceecCCCcc--cccCcccccccCCHHHHhCCCCcCchhh
Confidence            56888999999999999999999999999999999999999987654321  1223457889999998866 45789999


Q ss_pred             eehhhhhhccccCCCCCcCCC
Q 045449          758 VCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       758 v~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      ||||||+++++.+|..||.+.
T Consensus       184 i~slG~i~~~l~~g~~p~~~~  204 (286)
T cd07847         184 VWAIGCVFAELLTGQPLWPGK  204 (286)
T ss_pred             hHHHHHHHHHHHhCCCCCCCC
Confidence            999999999999999998654

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The functio

>cd05038 PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=99.79  E-value=1.3e-19  Score=192.89  Aligned_cols=138  Identities=30%  Similarity=0.380  Sum_probs=114.5

Q ss_pred             CeEEEEEEehHhhHH-HHHHHHHHHHHHhhcchhhHHH------------------------------------------
Q 045449          641 GMEVAVKVFHQQYER-ALKSFEDECEVRKRIRHRNLVK------------------------------------------  677 (823)
Q Consensus       641 ~~~vavK~~~~~~~~-~~~~~~~E~~~l~~l~h~niv~------------------------------------------  677 (823)
                      +..||||++...... ..+.|.+|+++++++.|+||++                                          
T Consensus        33 ~~~~avK~~~~~~~~~~~~~~~~ei~~l~~l~~~~i~~~~~~~~~~~~~~~~lv~e~~~~~~l~~~l~~~~~~~~~~~~~  112 (284)
T cd05038          33 GEQVAVKSLNHSGEEQHRSDFEREIEILRTLDHENIVKYKGVCEKPGGRSLRLIMEYLPSGSLRDYLQRHRDQINLKRLL  112 (284)
T ss_pred             ceEEEEEEeccccchHHHHHHHHHHHHHHhCCCCChheEEeeeecCCCCceEEEEecCCCCCHHHHHHhCccccCHHHHH
Confidence            578999999755432 5678999999999999999998                                          


Q ss_pred             -HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCcc-ccccccccCCCcCcccccCCCccccc
Q 045449          678 -IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQL-SKQTQTLATIGYMAPEYGTKGRVSTR  755 (823)
Q Consensus       678 -~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~  755 (823)
                       ++.|++.+|+|+|+.+++||||||+||+++.++.+|++|||.++........ .......++..|+|||......++.+
T Consensus       113 ~~~~~l~~aL~~lH~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~  192 (284)
T cd05038         113 LFSSQICKGMDYLGSQRYIHRDLAARNILVESEDLVKISDFGLAKVLPEDKDYYYVKEPGESPIFWYAPECLRTSKFSSA  192 (284)
T ss_pred             HHHHHHHHHHHHHHhCCeecCCCCHHhEEEcCCCCEEEcccccccccccCCcceeccCCCCCcccccCcHHHccCCCCcc
Confidence             3567888999999999999999999999999999999999999876533221 11112345667999999988889999


Q ss_pred             cceehhhhhhccccCCCCCcCCC
Q 045449          756 GDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       756 ~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      +|||||||+++++.+|..|+...
T Consensus       193 ~Di~slG~~l~el~tg~~p~~~~  215 (284)
T cd05038         193 SDVWSFGVTLYELFTYGDPSQSP  215 (284)
T ss_pred             cchHHHhhhhheeeccCCCcccc
Confidence            99999999999999999887653

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by aut

>cd06635 STKc_TAO1 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1

Probab=99.79  E-value=6.4e-20  Score=198.66  Aligned_cols=132  Identities=29%  Similarity=0.356  Sum_probs=110.8

Q ss_pred             CeEEEEEEehHh---hHHHHHHHHHHHHHHhhcchhhHHH----------------------------------------
Q 045449          641 GMEVAVKVFHQQ---YERALKSFEDECEVRKRIRHRNLVK----------------------------------------  677 (823)
Q Consensus       641 ~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~----------------------------------------  677 (823)
                      +..||+|++...   .....+++.+|++++++++|+|+++                                        
T Consensus        50 ~~~valK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~g~l~~~~~~~~~~l~~~~~~~  129 (317)
T cd06635          50 NEVVAIKKMSYSGKQSNEKWQDIIKEVKFLQRIKHPNSIEYKGCYLREHTAWLVMEYCLGSASDLLEVHKKPLQEVEIAA  129 (317)
T ss_pred             CcEEEEEEEecCCCCchHHHHHHHHHHHHHHhCCCCCEEEEEEEEeeCCeEEEEEeCCCCCHHHHHHHhcCCCCHHHHHH
Confidence            577999998632   2344567899999999999999988                                        


Q ss_pred             HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccC---CCcccc
Q 045449          678 IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGT---KGRVST  754 (823)
Q Consensus       678 ~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~---~~~~~~  754 (823)
                      ++.++++++.|+|+.+|+||||||+||+++.++.+||+|||++......      ....|++.|+|||++.   .+.++.
T Consensus       130 i~~~i~~~l~~lH~~~i~H~dL~p~Nil~~~~~~~kl~dfg~~~~~~~~------~~~~~~~~y~aPE~~~~~~~~~~~~  203 (317)
T cd06635         130 ITHGALQGLAYLHSHNMIHRDIKAGNILLTEPGQVKLADFGSASIASPA------NSFVGTPYWMAPEVILAMDEGQYDG  203 (317)
T ss_pred             HHHHHHHHHHHHHHCCcccCCCCcccEEECCCCCEEEecCCCccccCCc------ccccCCccccChhhhhcCCCCCCCc
Confidence            3567888999999999999999999999999999999999998764322      2346889999999873   456899


Q ss_pred             ccceehhhhhhccccCCCCCcCCC
Q 045449          755 RGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       755 ~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      ++|||||||+++++.+|..||.+.
T Consensus       204 ~~Dv~slGvil~el~~g~~p~~~~  227 (317)
T cd06635         204 KVDVWSLGITCIELAERKPPLFNM  227 (317)
T ss_pred             cccHHHHHHHHHHHHhCCCCCCCc
Confidence            999999999999999999998653

Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuron

>cd07846 STKc_CDKL2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3

Probab=99.79  E-value=8.5e-20  Score=194.54  Aligned_cols=147  Identities=30%  Similarity=0.397  Sum_probs=117.5

Q ss_pred             cCCccceeeccC------------CeEEEEEEehHhh--HHHHHHHHHHHHHHhhcchhhHHH-----------------
Q 045449          629 RFSENNLIGIGN------------GMEVAVKVFHQQY--ERALKSFEDECEVRKRIRHRNLVK-----------------  677 (823)
Q Consensus       629 ~f~~~~~lg~g~------------~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~-----------------  677 (823)
                      +|+..+.+|.|+            ++.||+|++....  ....+.+.+|++++++++||||++                 
T Consensus         2 ~y~~~~~lg~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   81 (286)
T cd07846           2 KYENLGLVGEGSYGMVMKCKHKETGQIVAIKKFLESEDDKMVKKIAMREIRMLKQLRHENLVNLIEVFRRKKRLYLVFEF   81 (286)
T ss_pred             ceeEeeeeccCCCeEEEEEEECCCCCEEEEEeHhhccCcchhhHHHHHHHHHHHhcCCcchhhHHHhcccCCeEEEEEec
Confidence            344555666553            5779999886433  223467889999999999999998                 


Q ss_pred             -----------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccc
Q 045449          678 -----------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQ  734 (823)
Q Consensus       678 -----------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~  734 (823)
                                             ++.|++.+|.|+|+.+++|||++|+||+++.++.+||+|||+++.......  ....
T Consensus        82 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~i~h~~l~p~ni~~~~~~~~~l~dfg~~~~~~~~~~--~~~~  159 (286)
T cd07846          82 VDHTVLDDLEKYPNGLDESRVRKYLFQILRGIEFCHSHNIIHRDIKPENILVSQSGVVKLCDFGFARTLAAPGE--VYTD  159 (286)
T ss_pred             CCccHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCCHHHEEECCCCcEEEEeeeeeeeccCCcc--ccCc
Confidence                                   245788889999999999999999999999999999999999987543321  2234


Q ss_pred             cccCCCcCcccccCC-CccccccceehhhhhhccccCCCCCcCC
Q 045449          735 TLATIGYMAPEYGTK-GRVSTRGDVCSFGIISGGKETRSMTVGE  777 (823)
Q Consensus       735 ~~gt~~y~aPE~~~~-~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~  777 (823)
                      ..++..|+|||+..+ ..++.++|||||||+++++.+|..+|..
T Consensus       160 ~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~el~~g~~~~~~  203 (286)
T cd07846         160 YVATRWYRAPELLVGDTKYGRAVDIWAVGCLVTEMLTGEPLFPG  203 (286)
T ss_pred             ccceeeccCcHHhccccccCchHhHHHHHHHHHHHHcCCCCCCC
Confidence            568899999998865 3478899999999999999999888754

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKI

>cd08217 STKc_Nek2 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

Probab=99.79  E-value=1e-19  Score=191.31  Aligned_cols=136  Identities=25%  Similarity=0.355  Sum_probs=114.3

Q ss_pred             CeEEEEEEehHh--hHHHHHHHHHHHHHHhhcchhhHHH-----------------------------------------
Q 045449          641 GMEVAVKVFHQQ--YERALKSFEDECEVRKRIRHRNLVK-----------------------------------------  677 (823)
Q Consensus       641 ~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~-----------------------------------------  677 (823)
                      +..||+|++...  .....+++..|++++++++|+||++                                         
T Consensus        25 ~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~e~~~~~~L~~~l~~~~~~~~~l~~  104 (265)
T cd08217          25 GKILVWKEIDYGNMTEKEKQQLVSEVNILRELKHPNIVRYYDRIIDRSNQTLYIVMEYCEGGDLAQLIQKCKKERKYIEE  104 (265)
T ss_pred             CCEEEEEEEecccCCHHHHHHHHHHHHHHHhcCCCccceeeeeeecCCCCEEEEEehhccCCCHHHHHHHHhhcccCCCH
Confidence            567999988643  2344567899999999999999998                                         


Q ss_pred             -----HHHHHHHHhhhcC-----CCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCccccc
Q 045449          678 -----IISSSLEYLHFGH-----SIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYG  747 (823)
Q Consensus       678 -----~~~~~l~~L~~~h-----~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~  747 (823)
                           ++.+++++|+++|     +.+++||||||+||+++.++.+|++|||+++.......  ......|++.|+|||++
T Consensus       105 ~~~~~~~~~i~~~l~~lH~~~~~~~~i~h~dl~p~nili~~~~~~kl~d~g~~~~~~~~~~--~~~~~~~~~~~~~pE~~  182 (265)
T cd08217         105 EFIWRILTQLLLALYECHNRSDPGNTVLHRDLKPANIFLDANNNVKLGDFGLAKILGHDSS--FAKTYVGTPYYMSPEQL  182 (265)
T ss_pred             HHHHHHHHHHHHHHHHHhcCccccCcceecCCCHHHEEEecCCCEEEecccccccccCCcc--cccccccCCCccChhhh
Confidence                 2457788888888     99999999999999999999999999999987654332  12335689999999999


Q ss_pred             CCCccccccceehhhhhhccccCCCCCcCCC
Q 045449          748 TKGRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       748 ~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      .+..++.++|||||||+++++.+|..|+...
T Consensus       183 ~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~  213 (265)
T cd08217         183 NHMSYDEKSDIWSLGCLIYELCALSPPFTAR  213 (265)
T ss_pred             cCCCCCchhHHHHHHHHHHHHHHCCCcccCc
Confidence            8888999999999999999999999998764

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exi

>cd05034 PTKc_Src_like Catalytic domain of Src kinase-like Protein Tyrosine Kinases

Probab=99.79  E-value=4.7e-20  Score=193.71  Aligned_cols=149  Identities=28%  Similarity=0.457  Sum_probs=118.6

Q ss_pred             ccCCccceeeccC-----------CeEEEEEEehHhhHHHHHHHHHHHHHHhhcchhhHHH-------------------
Q 045449          628 DRFSENNLIGIGN-----------GMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVK-------------------  677 (823)
Q Consensus       628 ~~f~~~~~lg~g~-----------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~-------------------  677 (823)
                      ++|...+.+|.|+           +..||||.+..... ..+++.+|+.++++++|+||++                   
T Consensus         6 ~~~~i~~~ig~g~~~~v~~~~~~~~~~~~vK~~~~~~~-~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~   84 (261)
T cd05034           6 ESLKLERKLGAGQFGEVWMGTWNGTTKVAVKTLKPGTM-SPEAFLQEAQIMKKLRHDKLVQLYAVCSEEEPIYIVTEYMS   84 (261)
T ss_pred             hheeeeeeeccCcceEEEEEEEcCCceEEEEEecCCcc-CHHHHHHHHHHHhhCCCCCEeeeeeeeecCCceEEEEeccC
Confidence            3455556666554           35689998875432 3467999999999999999998                   


Q ss_pred             -----------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccc
Q 045449          678 -----------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQ  734 (823)
Q Consensus       678 -----------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~  734 (823)
                                             ++.+++.++.|+|+.+++||||||+||+++.++.+|++|||.++....... .....
T Consensus        85 ~~~L~~~i~~~~~~~~~~~~~~~~~~~i~~al~~lh~~~i~h~di~p~nili~~~~~~~l~d~g~~~~~~~~~~-~~~~~  163 (261)
T cd05034          85 KGSLLDFLKSGEGKKLRLPQLVDMAAQIAEGMAYLESRNYIHRDLAARNILVGENLVCKIADFGLARLIEDDEY-TAREG  163 (261)
T ss_pred             CCCHHHHHhccccCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCcchheEEEcCCCCEEECccccceeccchhh-hhhhc
Confidence                                   346788899999999999999999999999999999999999987643211 11122


Q ss_pred             cccCCCcCcccccCCCccccccceehhhhhhccccC-CCCCcCCC
Q 045449          735 TLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKET-RSMTVGET  778 (823)
Q Consensus       735 ~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~-~~~~~~~~  778 (823)
                      ..++..|+|||.+.+..++.++||||+||+++++.+ |..||.+.
T Consensus       164 ~~~~~~y~~PE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~  208 (261)
T cd05034         164 AKFPIKWTAPEAANYGRFTIKSDVWSFGILLTEIVTYGRVPYPGM  208 (261)
T ss_pred             cCCCccccCHHHhccCCcCchhHHHHHHHHHHHHHhCCCCCCCCC
Confidence            335678999999988889999999999999999998 88888654

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-t

>KOG4257 consensus Focal adhesion tyrosine kinase FAK, contains FERM domain [Signal transduction mechanisms]

Probab=99.79  E-value=6.2e-20  Score=196.49  Aligned_cols=177  Identities=18%  Similarity=0.216  Sum_probs=138.5

Q ss_pred             eEEEEEEehHhh-HHHHHHHHHHHHHHhhcchhhHHHH----------------------------------------HH
Q 045449          642 MEVAVKVFHQQY-ERALKSFEDECEVRKRIRHRNLVKI----------------------------------------IS  680 (823)
Q Consensus       642 ~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~~----------------------------------------~~  680 (823)
                      --||||..+.+. ....+.|..|+.+|+.++|||||++                                        ..
T Consensus       419 iaVAvKtCK~d~t~d~tekflqEa~iMrnfdHphIikLIGv~~e~P~WivmEL~~~GELr~yLq~nk~sL~l~tL~ly~~  498 (974)
T KOG4257|consen  419 IAVAVKTCKTDCTPDDTEKFLQEASIMRNFDHPHIIKLIGVCVEQPMWIVMELAPLGELREYLQQNKDSLPLRTLTLYCY  498 (974)
T ss_pred             eeeeeehhccCCChhhHHHHHHHHHHHHhCCCcchhheeeeeeccceeEEEecccchhHHHHHHhccccchHHHHHHHHH
Confidence            449999998644 3446889999999999999999992                                        45


Q ss_pred             HHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccCCCccccccceeh
Q 045449          681 SSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCS  760 (823)
Q Consensus       681 ~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S  760 (823)
                      |+..+|.|+|+...|||||-..|||+.....+|++|||++|.+..+..+.. +...-...|||||.+...+++.++|||=
T Consensus       499 Qi~talaYLeSkrfVHRDIAaRNiLVsSp~CVKLaDFGLSR~~ed~~yYka-S~~kLPIKWmaPESINfRrFTtASDVWM  577 (974)
T KOG4257|consen  499 QICTALAYLESKRFVHRDIAARNILVSSPQCVKLADFGLSRYLEDDAYYKA-SRGKLPIKWMAPESINFRRFTTASDVWM  577 (974)
T ss_pred             HHHHHHHHHHhhchhhhhhhhhheeecCcceeeecccchhhhccccchhhc-cccccceeecCccccchhcccchhhHHH
Confidence            888899999999999999999999999999999999999999876655433 3444578899999999999999999999


Q ss_pred             hhhhhccc-cCCCCCcCCCcccccccccccCCcccccccCCCcccccccccccccccccCC
Q 045449          761 FGIISGGK-ETRSMTVGETCTPVRESKYEVHPATTTIMEHPLPRVGEVMDVDRGKARIQGK  820 (823)
Q Consensus       761 ~Gvv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  820 (823)
                      |||.+||+ ..|.-||++.......+..+.- ...+.++.+.|..--+|..+....+..||
T Consensus       578 FgVCmWEIl~lGvkPfqgvkNsDVI~~iEnG-eRlP~P~nCPp~LYslmskcWayeP~kRP  637 (974)
T KOG4257|consen  578 FGVCMWEILSLGVKPFQGVKNSDVIGHIENG-ERLPCPPNCPPALYSLMSKCWAYEPSKRP  637 (974)
T ss_pred             HHHHHHHHHHhcCCccccccccceEEEecCC-CCCCCCCCCChHHHHHHHHHhccCcccCC
Confidence            99999997 4688999987665444443322 11233455566666666666665555554

>cd08220 STKc_Nek8 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8

Probab=99.79  E-value=1.3e-19  Score=189.59  Aligned_cols=135  Identities=27%  Similarity=0.415  Sum_probs=112.6

Q ss_pred             CeEEEEEEehHhh--HHHHHHHHHHHHHHhhcchhhHHH-----------------------------------------
Q 045449          641 GMEVAVKVFHQQY--ERALKSFEDECEVRKRIRHRNLVK-----------------------------------------  677 (823)
Q Consensus       641 ~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~-----------------------------------------  677 (823)
                      +..||||++....  ....+.+.+|++++++++|||+++                                         
T Consensus        25 ~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~  104 (256)
T cd08220          25 QKLVIIKQIPVEQMTKDERLAAQNECQVLKLLSHPNIIEYYENFLEDKALMIVMEYAPGGTLAEYIQKRCNSLLDEDTIL  104 (256)
T ss_pred             CcEEEEEEEeccccccHHHHHHHHHHHHHhhCCCCchhheeeeEecCCEEEEEEecCCCCCHHHHHHHhcccCCCHHHHH
Confidence            5679999886432  334578999999999999999998                                         


Q ss_pred             -HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCC-CcEEEeecccccccCCCCccccccccccCCCcCcccccCCCccccc
Q 045449          678 -IISSSLEYLHFGHSIPIIHCDLKPSNVLLDED-MVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTR  755 (823)
Q Consensus       678 -~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~-~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~  755 (823)
                       ++.+++++|+++|+.+++||||||+||+++.+ +.+|++|||+++.......   .....|+..|+|||...+..++.+
T Consensus       105 ~~~~~i~~~l~~lh~~~i~h~dl~~~nil~~~~~~~~~l~d~~~~~~~~~~~~---~~~~~~~~~y~aPE~~~~~~~~~~  181 (256)
T cd08220         105 HFFVQILLALHHVHTKLILHRDLKTQNILLDKHKMVVKIGDFGISKILSSKSK---AYTVVGTPCYISPELCEGKPYNQK  181 (256)
T ss_pred             HHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCCEEEEccCCCceecCCCcc---ccccccCCcccCchhccCCCCCcc
Confidence             24678889999999999999999999999854 5689999999987643321   223568999999999988889999


Q ss_pred             cceehhhhhhccccCCCCCcCCC
Q 045449          756 GDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       756 ~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      +|||||||+++++.++..||...
T Consensus       182 ~Dv~slG~~l~~l~~~~~~~~~~  204 (256)
T cd08220         182 SDIWALGCVLYELASLKRAFEAA  204 (256)
T ss_pred             cchHHHHHHHHHHHhCCCCcccC
Confidence            99999999999999999998664

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with

>cd05046 PTK_CCK4 Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4

Probab=99.79  E-value=7.4e-20  Score=193.85  Aligned_cols=137  Identities=20%  Similarity=0.284  Sum_probs=111.9

Q ss_pred             CeEEEEEEehHhhHH-HHHHHHHHHHHHhhcchhhHHH------------------------------------------
Q 045449          641 GMEVAVKVFHQQYER-ALKSFEDECEVRKRIRHRNLVK------------------------------------------  677 (823)
Q Consensus       641 ~~~vavK~~~~~~~~-~~~~~~~E~~~l~~l~h~niv~------------------------------------------  677 (823)
                      ...||+|.+...... ..+.|.+|++++++++|+||++                                          
T Consensus        35 ~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~l  114 (275)
T cd05046          35 ETLVLVKALQKTKDENLQSEFRRELDMFRKLSHKNVVRLLGLCREAEPHYMILEYTDLGDLKQFLRATKSKDEKLKPPPL  114 (275)
T ss_pred             cceEEEEccCCccchHHHHHHHHHHHHHHhcCCcceeeeEEEECCCCcceEEEEecCCCcHHHHHHhcccccccccccCC
Confidence            356899988654433 5578999999999999999998                                          


Q ss_pred             -------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccCCC
Q 045449          678 -------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKG  750 (823)
Q Consensus       678 -------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~  750 (823)
                             ++.|++++|+|+|+.+|+||||||+||+++.++.++++|||+++....... .......++..|+|||.+.+.
T Consensus       115 ~~~~~~~~~~~l~~~l~~LH~~~i~H~dlkp~Nili~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~y~~PE~~~~~  193 (275)
T cd05046         115 STKQKVALCTQIALGMDHLSNARFVHRDLAARNCLVSSQREVKVSLLSLSKDVYNSEY-YKLRNALIPLRWLAPEAVQED  193 (275)
T ss_pred             CHHHHHHHHHHHHHHHHHhhhcCcccCcCccceEEEeCCCcEEEcccccccccCcccc-cccCCceeEEeecChhhhccC
Confidence                   245788899999999999999999999999999999999999875432221 122334567889999998888


Q ss_pred             ccccccceehhhhhhccccC-CCCCcCCC
Q 045449          751 RVSTRGDVCSFGIISGGKET-RSMTVGET  778 (823)
Q Consensus       751 ~~~~~~Dv~S~Gvv~~~~~~-~~~~~~~~  778 (823)
                      .++.++|||||||+++++.+ |..||.+.
T Consensus       194 ~~~~~~Di~slG~~l~~l~~~~~~p~~~~  222 (275)
T cd05046         194 DFSTKSDVWSFGVLMWEVFTQGELPFYGL  222 (275)
T ss_pred             CCCchhhHHHHHHHHHHHHhCCCCCcccc
Confidence            89999999999999999987 67777553

Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is s

>cd06640 STKc_MST4 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4

Probab=99.78  E-value=6.4e-20  Score=194.61  Aligned_cols=137  Identities=26%  Similarity=0.339  Sum_probs=115.9

Q ss_pred             CCeEEEEEEehHhh-HHHHHHHHHHHHHHhhcchhhHHH---------------------------------------HH
Q 045449          640 NGMEVAVKVFHQQY-ERALKSFEDECEVRKRIRHRNLVK---------------------------------------II  679 (823)
Q Consensus       640 ~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~---------------------------------------~~  679 (823)
                      .+..||+|++.... ....+.+.+|+++++++.|+||++                                       ++
T Consensus        28 ~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~i~~~~l~~~~~~~~~  107 (277)
T cd06640          28 TQQVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKGTKLWIIMEYLGGGSALDLLRAGPFDEFQIATML  107 (277)
T ss_pred             CCEEEEEEEEeccccHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCEEEEEEecCCCCcHHHHHhcCCCCHHHHHHHH
Confidence            36789999987443 445578999999999999999998                                       35


Q ss_pred             HHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccCCCcccccccee
Q 045449          680 SSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVC  759 (823)
Q Consensus       680 ~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~  759 (823)
                      .|++.+|.++|+.+++|+||+|+||+++.++.++++|||++........  ......++..|+|||++.+..++.++|||
T Consensus       108 ~~l~~~l~~lh~~~ivH~dl~p~Nil~~~~~~~~l~dfg~~~~~~~~~~--~~~~~~~~~~y~apE~~~~~~~~~~~Dv~  185 (277)
T cd06640         108 KEILKGLDYLHSEKKIHRDIKAANVLLSEQGDVKLADFGVAGQLTDTQI--KRNTFVGTPFWMAPEVIQQSAYDSKADIW  185 (277)
T ss_pred             HHHHHHHHHHHhCCccCcCCChhhEEEcCCCCEEEcccccceeccCCcc--ccccccCcccccCHhHhccCCCccHHHHH
Confidence            6788889999999999999999999999999999999999987643321  12234688899999999888899999999


Q ss_pred             hhhhhhccccCCCCCcCCC
Q 045449          760 SFGIISGGKETRSMTVGET  778 (823)
Q Consensus       760 S~Gvv~~~~~~~~~~~~~~  778 (823)
                      ||||+++++.+|..|+.+.
T Consensus       186 slG~il~el~tg~~p~~~~  204 (277)
T cd06640         186 SLGITAIELAKGEPPNSDM  204 (277)
T ss_pred             HHHHHHHHHHHCCCCCCCc
Confidence            9999999999999998654

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by inter

>cd06610 STKc_OSR1_SPAK Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

Probab=99.78  E-value=9.3e-20  Score=191.98  Aligned_cols=150  Identities=27%  Similarity=0.392  Sum_probs=121.2

Q ss_pred             cCCccceeeccC------------CeEEEEEEehHhh-HHHHHHHHHHHHHHhhcchhhHHH------------------
Q 045449          629 RFSENNLIGIGN------------GMEVAVKVFHQQY-ERALKSFEDECEVRKRIRHRNLVK------------------  677 (823)
Q Consensus       629 ~f~~~~~lg~g~------------~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~------------------  677 (823)
                      +|...+.+|.|+            +..||+|++.... ....+.+.+|++++++++|+|+++                  
T Consensus         2 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~iv~e~~   81 (267)
T cd06610           2 DYELIEVIGVGATAVVYAAICLPNNEKVAIKRIDLEKCQTSVDELRKEVQAMSQCNHPNVVKYYTSFVVGDELWLVMPYL   81 (267)
T ss_pred             cceeeeeecCCCCeEEEEEEEcCCCcEEEEEEeccCCcchHHHHHHHHHHHHHhcCCCCEEEEEEEEeeCCEEEEEEecc
Confidence            455555566553            5679999986432 335678999999999999999987                  


Q ss_pred             -------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccc--
Q 045449          678 -------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLS--  730 (823)
Q Consensus       678 -------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~--  730 (823)
                                               ++.|++++|.++|+.+++|||+||+||++++++.+||+|||++..+.......  
T Consensus        82 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~ql~~al~~lh~~~i~h~~l~p~ni~~~~~~~~~l~df~~~~~~~~~~~~~~~  161 (267)
T cd06610          82 SGGSLLDIMKSSYPRGGLDEAIIATVLKEVLKGLEYLHSNGQIHRDIKAGNILLGEDGSVKIADFGVSASLADGGDRTRK  161 (267)
T ss_pred             CCCcHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHhEEEcCCCCEEEcccchHHHhccCcccccc
Confidence                                     24678889999999999999999999999999999999999998765433221  


Q ss_pred             cccccccCCCcCcccccCCC-ccccccceehhhhhhccccCCCCCcCCC
Q 045449          731 KQTQTLATIGYMAPEYGTKG-RVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       731 ~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      ......|+..|+|||++... .++.++|||||||+++++.+|..||...
T Consensus       162 ~~~~~~~~~~y~~Pe~~~~~~~~~~~~Dv~slG~i~~~l~~g~~p~~~~  210 (267)
T cd06610         162 VRKTFVGTPCWMAPEVMEQVHGYDFKADIWSFGITAIELATGAAPYSKY  210 (267)
T ss_pred             ccccccCChhhcChHHHccccCcCcccchHhHhHHHHHHHhCCCCcccc
Confidence            12334689999999998776 7899999999999999999999998654

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1

>cd08218 STKc_Nek1 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1

Probab=99.78  E-value=1.1e-19  Score=190.25  Aligned_cols=135  Identities=21%  Similarity=0.318  Sum_probs=113.7

Q ss_pred             CeEEEEEEehHhh--HHHHHHHHHHHHHHhhcchhhHHH-----------------------------------------
Q 045449          641 GMEVAVKVFHQQY--ERALKSFEDECEVRKRIRHRNLVK-----------------------------------------  677 (823)
Q Consensus       641 ~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~-----------------------------------------  677 (823)
                      +..||+|++....  ....+++.+|++++++++||||++                                         
T Consensus        25 ~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~  104 (256)
T cd08218          25 GKQYVIKEINISKMSPKEREESRKEVAVLSNMKHPNIVQYQESFEENGNLYIVMDYCEGGDLYKKINAQRGVLFPEDQIL  104 (256)
T ss_pred             CCEEEEEEEEhHhCChHHHHHHHHHHHHHHhCCCCCeeeeEeeecCCCeEEEEEecCCCCcHHHHHHhccCCCCCHHHHH
Confidence            5779999886432  344568999999999999999998                                         


Q ss_pred             -HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccCCCcccccc
Q 045449          678 -IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRG  756 (823)
Q Consensus       678 -~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~  756 (823)
                       ++.|++.++.++|+.+++|+||+|+||+++.++.++++|||++........  ......|++.|+|||+..+..++.++
T Consensus       105 ~~~~~l~~~l~~lh~~~i~h~~l~~~nil~~~~~~~~l~d~~~~~~~~~~~~--~~~~~~~~~~~~~pe~~~~~~~~~~~  182 (256)
T cd08218         105 DWFVQICLALKHVHDRKILHRDIKSQNIFLTKDGTIKLGDFGIARVLNSTVE--LARTCIGTPYYLSPEICENRPYNNKS  182 (256)
T ss_pred             HHHHHHHHHHHHHHhCCEecCCCCHHHEEEcCCCCEEEeeccceeecCcchh--hhhhccCCccccCHHHhCCCCCCCcc
Confidence             245788889999999999999999999999999999999999986543222  12234688999999999888899999


Q ss_pred             ceehhhhhhccccCCCCCcCC
Q 045449          757 DVCSFGIISGGKETRSMTVGE  777 (823)
Q Consensus       757 Dv~S~Gvv~~~~~~~~~~~~~  777 (823)
                      |||||||+++++.+|..|+..
T Consensus       183 Dv~slG~i~~~l~~g~~~~~~  203 (256)
T cd08218         183 DIWALGCVLYEMCTLKHAFEA  203 (256)
T ss_pred             chhHHHHHHHHHHcCCCCccC
Confidence            999999999999999998854

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycysti

>cd05572 STKc_cGK_PKG Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase

Probab=99.78  E-value=1.2e-19  Score=190.77  Aligned_cols=136  Identities=28%  Similarity=0.284  Sum_probs=116.0

Q ss_pred             CeEEEEEEehHhh---HHHHHHHHHHHHHHhhcchhhHHH----------------------------------------
Q 045449          641 GMEVAVKVFHQQY---ERALKSFEDECEVRKRIRHRNLVK----------------------------------------  677 (823)
Q Consensus       641 ~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~----------------------------------------  677 (823)
                      +..||+|++....   ....+.+.+|++++++++||||++                                        
T Consensus        18 ~~~~~iK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~l~~~~~~~   97 (262)
T cd05572          18 NRTFALKCVKKRHIVETGQQEHIFSEKEILEECNHPFIVKLYRTFKDKKYIYMLMEYCLGGELWTILRDRGLFDEYTARF   97 (262)
T ss_pred             CcEEEEEEEehhcchhhhHHHHHHHHHHHHHhCCCCCEeeeeeeEEcCCccEEEEecCCCCcHHHHHhhcCCCCHHHHHH
Confidence            6789999986543   234468999999999999999998                                        


Q ss_pred             HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccCCCccccccc
Q 045449          678 IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGD  757 (823)
Q Consensus       678 ~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~D  757 (823)
                      ++.|++.+|+|+|+.+++|+||||+||+++.++.+||+|||+++......   ......|++.|+|||++.+..++.++|
T Consensus        98 ~~~~i~~~l~~lH~~~~~h~dl~~~nilv~~~~~~~l~df~~~~~~~~~~---~~~~~~~~~~~~~PE~~~~~~~~~~~D  174 (262)
T cd05572          98 YIACVVLAFEYLHNRGIIYRDLKPENLLLDSNGYVKLVDFGFAKKLKSGQ---KTWTFCGTPEYVAPEIILNKGYDFSVD  174 (262)
T ss_pred             HHHHHHHHHHHHhhCCcccCCCCHHHEEEcCCCCEEEeeCCcccccCccc---ccccccCCcCccChhHhcCCCCCChhh
Confidence            24678899999999999999999999999999999999999998765432   122346889999999988888999999


Q ss_pred             eehhhhhhccccCCCCCcCCCc
Q 045449          758 VCSFGIISGGKETRSMTVGETC  779 (823)
Q Consensus       758 v~S~Gvv~~~~~~~~~~~~~~~  779 (823)
                      +||+||++|++.+|..||....
T Consensus       175 i~slG~il~~l~~g~~p~~~~~  196 (262)
T cd05572         175 YWSLGILLYELLTGRPPFGEDD  196 (262)
T ss_pred             hhhhHHHHHHHHhCCCCcCCCC
Confidence            9999999999999999987654

Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowi

>cd07852 STKc_MAPK15 Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15

Probab=99.78  E-value=1e-19  Score=198.97  Aligned_cols=137  Identities=31%  Similarity=0.348  Sum_probs=111.8

Q ss_pred             CeEEEEEEehHhh--HHHHHHHHHHHHHHhhc-chhhHHH----------------------------------------
Q 045449          641 GMEVAVKVFHQQY--ERALKSFEDECEVRKRI-RHRNLVK----------------------------------------  677 (823)
Q Consensus       641 ~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l-~h~niv~----------------------------------------  677 (823)
                      +..||||++....  ......+.+|+++++++ +||||++                                        
T Consensus        32 ~~~~~vK~~~~~~~~~~~~~~~~~E~~~l~~l~~h~ni~~~~~~~~~~~~~~~~lv~e~~~~~L~~~~~~~~~~~~~~~~  111 (337)
T cd07852          32 KEVVALKKIFDAFRNATDAQRTFREIMFLQELGDHPNIVKLLNVIKAENDKDIYLVFEYMETDLHAVIRANILEDVHKRY  111 (337)
T ss_pred             CeEEEEEeeccccCcchhhhhhhHHHHHHHHhcCCCCccceeeeeccCCCceEEEEecccccCHHHHHhcCCCCHHHHHH
Confidence            5779999885422  23345678899999999 9999988                                        


Q ss_pred             HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCcc---ccccccccCCCcCcccccCC-Cccc
Q 045449          678 IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQL---SKQTQTLATIGYMAPEYGTK-GRVS  753 (823)
Q Consensus       678 ~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~---~~~~~~~gt~~y~aPE~~~~-~~~~  753 (823)
                      ++.|++.+|.|+|+.+|+||||||+||+++.++.+||+|||+++........   .......||..|+|||++.+ ..++
T Consensus       112 i~~qi~~~L~~LH~~~i~H~dl~p~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~  191 (337)
T cd07852         112 IMYQLLKALKYIHSGNVIHRDLKPSNILLNSDCRVKLADFGLARSLSELEENPENPVLTDYVATRWYRAPEILLGSTRYT  191 (337)
T ss_pred             HHHHHHHHHHHHHHCCeecCCCCHHHEEEcCCCcEEEeeccchhccccccccccCcchhcccccccccCceeeecccccc
Confidence            2567788999999999999999999999999999999999999876433221   12234568999999998755 4578


Q ss_pred             cccceehhhhhhccccCCCCCcCC
Q 045449          754 TRGDVCSFGIISGGKETRSMTVGE  777 (823)
Q Consensus       754 ~~~Dv~S~Gvv~~~~~~~~~~~~~  777 (823)
                      .++|||||||+++++++|+.||..
T Consensus       192 ~~sDi~slG~~l~el~tg~~pf~~  215 (337)
T cd07852         192 KGVDMWSVGCILGEMLLGKPLFPG  215 (337)
T ss_pred             ccchHHHHHHHHHHHHhCCCCCCC
Confidence            999999999999999999998854

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimul

>cd06657 STKc_PAK4 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4

Probab=99.78  E-value=9.5e-20  Score=194.79  Aligned_cols=137  Identities=25%  Similarity=0.303  Sum_probs=116.2

Q ss_pred             CCeEEEEEEehHhhHHHHHHHHHHHHHHhhcchhhHHH---------------------------------------HHH
Q 045449          640 NGMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVK---------------------------------------IIS  680 (823)
Q Consensus       640 ~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~---------------------------------------~~~  680 (823)
                      .+..||||.+........+.+.+|+.++++++|+|+++                                       ++.
T Consensus        44 ~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~  123 (292)
T cd06657          44 SGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFLEGGALTDIVTHTRMNEEQIAAVCL  123 (292)
T ss_pred             CCeEEEEEEecccchhHHHHHHHHHHHHHhcCCcchhheeeEEEeCCEEEEEEecCCCCcHHHHHhcCCCCHHHHHHHHH
Confidence            36789999986554555678999999999999999998                                       357


Q ss_pred             HHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccCCCccccccceeh
Q 045449          681 SSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCS  760 (823)
Q Consensus       681 ~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S  760 (823)
                      |++.+|.|+|+.|++||||||+||+++.++.++|+|||++........  ......|++.|+|||+..+..++.++||||
T Consensus       124 ql~~~l~~lH~~givH~dl~p~Nilv~~~~~~~l~dfg~~~~~~~~~~--~~~~~~~~~~y~~pE~~~~~~~~~~~Dv~s  201 (292)
T cd06657         124 AVLKALSVLHAQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVP--RRKSLVGTPYWMAPELISRLPYGPEVDIWS  201 (292)
T ss_pred             HHHHHHHHHHHCCeecCCCCHHHEEECCCCCEEEcccccceecccccc--cccccccCccccCHHHhcCCCCCchhhHHH
Confidence            889999999999999999999999999999999999999876543221  123356899999999998888999999999


Q ss_pred             hhhhhccccCCCCCcCCC
Q 045449          761 FGIISGGKETRSMTVGET  778 (823)
Q Consensus       761 ~Gvv~~~~~~~~~~~~~~  778 (823)
                      +||+++++.+|..||...
T Consensus       202 lGvil~el~tg~~p~~~~  219 (292)
T cd06657         202 LGIMVIEMVDGEPPYFNE  219 (292)
T ss_pred             HHHHHHHHHhCCCCCCCC
Confidence            999999999999998653

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell mo

>cd06617 PKc_MKK3_6 Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6

Probab=99.78  E-value=1.3e-19  Score=192.72  Aligned_cols=146  Identities=27%  Similarity=0.335  Sum_probs=112.7

Q ss_pred             cCCccceeeccC------------CeEEEEEEehHhh-HHHHHHHHHHHHH-HhhcchhhHHH-----------------
Q 045449          629 RFSENNLIGIGN------------GMEVAVKVFHQQY-ERALKSFEDECEV-RKRIRHRNLVK-----------------  677 (823)
Q Consensus       629 ~f~~~~~lg~g~------------~~~vavK~~~~~~-~~~~~~~~~E~~~-l~~l~h~niv~-----------------  677 (823)
                      +|+..+.||.|+            |..||+|++.... .....++..|+++ ++..+||||++                 
T Consensus         2 ~~~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~~~~~~~iv~~~~~~~~~~~~~lv~e~   81 (283)
T cd06617           2 DLEVIEELGRGAYGVVDKMRHVPTGTIMAVKRIRATVNSQEQKRLLMDLDISMRSVDCPYTVTFYGALFREGDVWICMEV   81 (283)
T ss_pred             CceEEEEecccCCeEEEEEEEcCCCcEEEEEEEecCCCcHHHHHHHHHHHHHHHHcCCCCeeeeeEEEecCCcEEEEhhh
Confidence            445555566553            6789999986543 2233456666665 55668999987                 


Q ss_pred             --------------------------HHHHHHHHhhhcCCC-CEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccc
Q 045449          678 --------------------------IISSSLEYLHFGHSI-PIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLS  730 (823)
Q Consensus       678 --------------------------~~~~~l~~L~~~h~~-~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~  730 (823)
                                                ++.|++.+|+|+|+. +++||||||+||+++.++.+||+|||+++......   
T Consensus        82 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~i~h~dlkp~nil~~~~~~~kl~dfg~~~~~~~~~---  158 (283)
T cd06617          82 MDTSLDKFYKKVYDKGLTIPEDILGKIAVSIVKALEYLHSKLSVIHRDVKPSNVLINRNGQVKLCDFGISGYLVDSV---  158 (283)
T ss_pred             hcccHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhcCCeecCCCCHHHEEECCCCCEEEeeccccccccccc---
Confidence                                      346788899999987 99999999999999999999999999998653221   


Q ss_pred             cccccccCCCcCcccccCC----CccccccceehhhhhhccccCCCCCcCC
Q 045449          731 KQTQTLATIGYMAPEYGTK----GRVSTRGDVCSFGIISGGKETRSMTVGE  777 (823)
Q Consensus       731 ~~~~~~gt~~y~aPE~~~~----~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~  777 (823)
                      ......|+..|+|||++.+    ..++.++|+||+||+++++.+|..||..
T Consensus       159 ~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~  209 (283)
T cd06617         159 AKTIDAGCKPYMAPERINPELNQKGYDVKSDVWSLGITMIELATGRFPYDS  209 (283)
T ss_pred             ccccccCCccccChhhcCCcccccccCccccchhhHHHHHHHHhCCCCCCc
Confidence            1123468899999998764    4568899999999999999999999864

Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs

>KOG0671 consensus LAMMER dual specificity kinases [Signal transduction mechanisms]

Probab=99.78  E-value=9.3e-20  Score=186.21  Aligned_cols=146  Identities=28%  Similarity=0.321  Sum_probs=117.4

Q ss_pred             hccCCccceeeccC------------CeEEEEEEehHhhHHHHHHHHHHHHHHhhcchh--h----HHH-----------
Q 045449          627 TDRFSENNLIGIGN------------GMEVAVKVFHQQYERALKSFEDECEVRKRIRHR--N----LVK-----------  677 (823)
Q Consensus       627 t~~f~~~~~lg~g~------------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~--n----iv~-----------  677 (823)
                      +.+|.....+|+|.            +..||||+++.. .+..+..+-|++++.++.+.  +    +|.           
T Consensus        88 ~~Ry~i~~~lGeGtFGkV~ec~D~~~~~~vAlKIik~V-~kYreAa~iEi~vLqki~~~DP~g~~rcv~m~~wFdyrghi  166 (415)
T KOG0671|consen   88 TNRYEIVDLLGEGTFGKVVECWDRETKEHVALKIIKNV-DKYREAALIEIEVLQKINESDPNGKFRCVQMRDWFDYRGHI  166 (415)
T ss_pred             ccceehhhhhcCCcccceEEEeecCCCceehHHHHHHH-HHHhhHHHHHHHHHHHHHhcCCCCceEEEeeehhhhccCce
Confidence            67788788888885            456888888644 45667788899999998322  1    111           


Q ss_pred             ------------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCC-------------------
Q 045449          678 ------------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDE-------------------  708 (823)
Q Consensus       678 ------------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~-------------------  708 (823)
                                                    +..|+++++.++|+.+++|.|+||+|||+..                   
T Consensus       167 CivfellG~S~~dFlk~N~y~~fpi~~ir~m~~QL~~sv~fLh~~kl~HTDLKPENILfvss~~~~~~~~k~~~~~~r~~  246 (415)
T KOG0671|consen  167 CIVFELLGLSTFDFLKENNYIPFPIDHIRHMGYQLLESVAFLHDLKLTHTDLKPENILFVSSEYFKTYNPKKKVCFIRPL  246 (415)
T ss_pred             EEEEeccChhHHHHhccCCccccchHHHHHHHHHHHHHHHHHHhcceeecCCChheEEEeccceEEEeccCCccceeccC
Confidence                                          3469999999999999999999999999821                   


Q ss_pred             -CCcEEEeecccccccCCCCccccccccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCC
Q 045449          709 -DMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       709 -~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                       +..+||+|||-|+......     ...+.|..|+|||++.+-+++.++||||+|||+.|+.+|...|+.-
T Consensus       247 ks~~I~vIDFGsAtf~~e~h-----s~iVsTRHYRAPEViLgLGwS~pCDvWSiGCIL~ElytG~~LFqtH  312 (415)
T KOG0671|consen  247 KSTAIKVIDFGSATFDHEHH-----STIVSTRHYRAPEVILGLGWSQPCDVWSIGCILVELYTGETLFQTH  312 (415)
T ss_pred             CCcceEEEecCCcceeccCc-----ceeeeccccCCchheeccCcCCccCceeeeeEEEEeeccceecccC
Confidence             3358999999998754332     4567899999999999999999999999999999999999888654

>cd06621 PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases

Probab=99.78  E-value=1e-19  Score=194.21  Aligned_cols=146  Identities=30%  Similarity=0.337  Sum_probs=120.6

Q ss_pred             cCCccceeeccC------------CeEEEEEEehHhh-HHHHHHHHHHHHHHhhcchhhHHH------------------
Q 045449          629 RFSENNLIGIGN------------GMEVAVKVFHQQY-ERALKSFEDECEVRKRIRHRNLVK------------------  677 (823)
Q Consensus       629 ~f~~~~~lg~g~------------~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~------------------  677 (823)
                      +|...+.+|.|.            ++.||+|++.... ....+++.+|++++++++||||++                  
T Consensus         2 ~~~~~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~e   81 (287)
T cd06621           2 KIVELSRLGEGAGGSVTKCRLKNTGMIFALKTITTDPNPDLQKQILRELEINKSCKSPYIVKYYGAFLDESSSSIGIAME   81 (287)
T ss_pred             ceEEEEEeccCCceEEEEEEECCCCeEEEEEEEecCCchHHHHHHHHHHHHHHhCCCCCeeeeeeEEEccCCCeEEEEEE
Confidence            455666677664            5779999987443 244578999999999999999988                  


Q ss_pred             ----------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCcc
Q 045449          678 ----------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQL  729 (823)
Q Consensus       678 ----------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~  729 (823)
                                                  ++.|++++|.|+|+.+++|||++|+||+++.++.++|+|||++........ 
T Consensus        82 ~~~~~~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~lH~~~i~H~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~-  160 (287)
T cd06621          82 YCEGGSLDSIYKKVKKRGGRIGEKVLGKIAESVLKGLSYLHSRKIIHRDIKPSNILLTRKGQVKLCDFGVSGELVNSLA-  160 (287)
T ss_pred             ecCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEEecCCeEEEeecccccccccccc-
Confidence                                        245678889999999999999999999999999999999999876542221 


Q ss_pred             ccccccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCC
Q 045449          730 SKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       730 ~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                         ....++..|+|||.+.+..++.++||||+||++|++.+|..||...
T Consensus       161 ---~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~  206 (287)
T cd06621         161 ---GTFTGTSFYMAPERIQGKPYSITSDVWSLGLTLLEVAQNRFPFPPE  206 (287)
T ss_pred             ---ccccCCccccCHHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCCcc
Confidence               2345788999999998889999999999999999999999998754

Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd07860 STKc_CDK2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3

Probab=99.78  E-value=1e-19  Score=193.74  Aligned_cols=136  Identities=30%  Similarity=0.371  Sum_probs=111.2

Q ss_pred             CeEEEEEEehHhh--HHHHHHHHHHHHHHhhcchhhHHH-----------------------------------------
Q 045449          641 GMEVAVKVFHQQY--ERALKSFEDECEVRKRIRHRNLVK-----------------------------------------  677 (823)
Q Consensus       641 ~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~-----------------------------------------  677 (823)
                      +..||||++....  ....+.+.+|++++++++||||++                                         
T Consensus        25 ~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~~~l~~~~~~~~~~~l~~~~~~~  104 (284)
T cd07860          25 GEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASPLSGIPLPLIKS  104 (284)
T ss_pred             CCEEEEEEccccccccccchHHHHHHHHHHhcCCCCCcchhhhcccCCcEEEEeeccccCHHHHHHhCCCCCCCHHHHHH
Confidence            5679999886433  223357889999999999999998                                         


Q ss_pred             HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccCCCc-ccccc
Q 045449          678 IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGR-VSTRG  756 (823)
Q Consensus       678 ~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~-~~~~~  756 (823)
                      ++.|++.+|+|+|+.+++||||+|+||+++.++.+||+|||+++.......  ......+++.|+|||+..+.. ++.++
T Consensus       105 ~~~~i~~~l~~lh~~~i~H~~l~p~nill~~~~~~~l~dfg~~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~~  182 (284)
T cd07860         105 YLFQLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVR--TYTHEVVTLWYRAPEILLGCKYYSTAV  182 (284)
T ss_pred             HHHHHHHHHHHHHHCCeecCCCCHHHEEECCCCCEEEeeccchhhcccCcc--ccccccccccccCCeEEecCCCCCcHH
Confidence            245788899999999999999999999999999999999999886543221  123345788999999876644 58899


Q ss_pred             ceehhhhhhccccCCCCCcCCC
Q 045449          757 DVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       757 Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      |||||||+++++++|..||.+.
T Consensus       183 Dv~slG~il~~l~tg~~p~~~~  204 (284)
T cd07860         183 DIWSLGCIFAEMVTRRALFPGD  204 (284)
T ss_pred             HHHHHHHHHHHHHHCCCCCCCC
Confidence            9999999999999999988653

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex

>cd07865 STKc_CDK9 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9

Probab=99.78  E-value=1.1e-19  Score=195.99  Aligned_cols=151  Identities=25%  Similarity=0.323  Sum_probs=119.8

Q ss_pred             ccCCccceeeccC------------CeEEEEEEehHhh--HHHHHHHHHHHHHHhhcchhhHHH----------------
Q 045449          628 DRFSENNLIGIGN------------GMEVAVKVFHQQY--ERALKSFEDECEVRKRIRHRNLVK----------------  677 (823)
Q Consensus       628 ~~f~~~~~lg~g~------------~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~----------------  677 (823)
                      ++|...+.+|.|+            +..||||++....  ......+.+|++++++++||||++                
T Consensus        12 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~   91 (310)
T cd07865          12 SKYEKLAKIGQGTFGEVFKARHKKTKQIVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKATPYNRYK   91 (310)
T ss_pred             hheEEEEEeecCCCEEEEEEEECCCCcEEEEEEEeccCCcCCchhHHHHHHHHHHhCCCCCccceEEEEecccccccCCC
Confidence            4577777788774            6779999886432  222345678999999999999987                


Q ss_pred             --------------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCC
Q 045449          678 --------------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSG  725 (823)
Q Consensus       678 --------------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~  725 (823)
                                                      ++.|++++|+|+|+.+++||||||+||+++.++.+||+|||+++....
T Consensus        92 ~~~~lv~e~~~~~l~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH~~~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~  171 (310)
T cd07865          92 GSFYLVFEFCEHDLAGLLSNKNVKFTLSEIKKVMKMLLNGLYYIHRNKILHRDMKAANILITKDGILKLADFGLARAFSL  171 (310)
T ss_pred             ceEEEEEcCCCcCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHEEECCCCcEEECcCCCcccccC
Confidence                                            246789999999999999999999999999999999999999987643


Q ss_pred             CCcc--ccccccccCCCcCcccccCCCc-cccccceehhhhhhccccCCCCCcCCC
Q 045449          726 EDQL--SKQTQTLATIGYMAPEYGTKGR-VSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       726 ~~~~--~~~~~~~gt~~y~aPE~~~~~~-~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      ....  .......++..|+|||++.+.. ++.++|||||||+++++.+|..||...
T Consensus       172 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~el~t~~~~~~~~  227 (310)
T cd07865         172 SKNSKPNRYTNRVVTLWYRPPELLLGERDYGPPIDMWGAGCIMAEMWTRSPIMQGN  227 (310)
T ss_pred             CcccCCCCccCcccCccccCcHHhcCCcccCchhhhHHHHHHHHHHHhCCCCCCCC
Confidence            2221  1123346788999999876644 788999999999999999999888654

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multipl

>cd05613 STKc_MSK1_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 1

Probab=99.78  E-value=1.6e-19  Score=192.84  Aligned_cols=137  Identities=25%  Similarity=0.288  Sum_probs=111.8

Q ss_pred             CCeEEEEEEehHhh----HHHHHHHHHHHHHHhhc-chhhHHH-------------------------------------
Q 045449          640 NGMEVAVKVFHQQY----ERALKSFEDECEVRKRI-RHRNLVK-------------------------------------  677 (823)
Q Consensus       640 ~~~~vavK~~~~~~----~~~~~~~~~E~~~l~~l-~h~niv~-------------------------------------  677 (823)
                      .|..||+|++....    ....+.+.+|++++.++ +|++|++                                     
T Consensus        27 ~g~~~aiK~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~l~~~~  106 (290)
T cd05613          27 SGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTDTKLHLILDYINGGELFTHLSQRERFKEQE  106 (290)
T ss_pred             CCceEEEEEeehhhhhhcchHHHHHHHHHHHHHhcccCCChhceeeEeecCCeEEEEEecCCCCcHHHHHHHcCCCCHHH
Confidence            35779999987543    23346788999999999 5899998                                     


Q ss_pred             ---HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccCCC--cc
Q 045449          678 ---IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKG--RV  752 (823)
Q Consensus       678 ---~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~--~~  752 (823)
                         ++.|++++|+|+|+.+++||||||+||+++.++.+||+|||+++....... .......|+..|+|||+....  .+
T Consensus       107 ~~~~~~qi~~al~~lH~~~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~  185 (290)
T cd05613         107 VQIYSGEIVLALEHLHKLGIIYRDIKLENILLDSNGHVVLTDFGLSKEFHEDEV-ERAYSFCGTIEYMAPDIVRGGDGGH  185 (290)
T ss_pred             HHHHHHHHHHHHHHHHhCCeeccCCCHHHeEECCCCCEEEeeCccceecccccc-cccccccCCcccCChhhccCCCCCC
Confidence               234889999999999999999999999999999999999999987543222 122345689999999998653  46


Q ss_pred             ccccceehhhhhhccccCCCCCcCC
Q 045449          753 STRGDVCSFGIISGGKETRSMTVGE  777 (823)
Q Consensus       753 ~~~~Dv~S~Gvv~~~~~~~~~~~~~  777 (823)
                      +.++|||||||+++++++|..|+..
T Consensus       186 ~~~~Dv~slG~~l~~ll~g~~p~~~  210 (290)
T cd05613         186 DKAVDWWSMGVLMYELLTGASPFTV  210 (290)
T ss_pred             CccccHHHHHHHHHHHhcCCCCCCc
Confidence            8899999999999999999999853

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK1, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>cd07880 STKc_p38gamma_MAPK12 Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase

Probab=99.78  E-value=1.5e-19  Score=197.87  Aligned_cols=150  Identities=29%  Similarity=0.386  Sum_probs=123.1

Q ss_pred             HHHhccCCccceeeccC------------CeEEEEEEehHhh--HHHHHHHHHHHHHHhhcchhhHHH------------
Q 045449          624 LRATDRFSENNLIGIGN------------GMEVAVKVFHQQY--ERALKSFEDECEVRKRIRHRNLVK------------  677 (823)
Q Consensus       624 ~~at~~f~~~~~lg~g~------------~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~------------  677 (823)
                      ....++|...+.||.|+            +..||||++....  ....+.+.+|++++++++||||++            
T Consensus        11 ~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~   90 (343)
T cd07880          11 WEVPDRYRDLKQVGSGAYGTVCSALDRRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMKHENVIGLLDVFTPDLSLD   90 (343)
T ss_pred             hccccceEEEEEeeecCCeEEEEEEECCCCcEEEEEEecccccchHHHHHHHHHHHHHHhcCCCCccceeeeecCCcccc
Confidence            34566788888888875            5679999985432  334467889999999999999876            


Q ss_pred             --------------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCC
Q 045449          678 --------------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSG  725 (823)
Q Consensus       678 --------------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~  725 (823)
                                                      ++.|++++|+|+|+.+|+||||||+||+++.++.+|++|||+++....
T Consensus        91 ~~~~~~lv~e~~~~~l~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~gi~H~dlkp~Nill~~~~~~kl~dfg~~~~~~~  170 (343)
T cd07880          91 RFHDFYLVMPFMGTDLGKLMKHEKLSEDRIQFLVYQMLKGLKYIHAAGIIHRDLKPGNLAVNEDCELKILDFGLARQTDS  170 (343)
T ss_pred             ccceEEEEEecCCCCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCCEEEeeccccccccc
Confidence                                            246888999999999999999999999999999999999999986532


Q ss_pred             CCccccccccccCCCcCcccccCC-CccccccceehhhhhhccccCCCCCcCCC
Q 045449          726 EDQLSKQTQTLATIGYMAPEYGTK-GRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       726 ~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      .     .....+++.|+|||++.+ ..++.++||||+||+++++.+|..||...
T Consensus       171 ~-----~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~ll~~l~~g~~pf~~~  219 (343)
T cd07880         171 E-----MTGYVVTRWYRAPEVILNWMHYTQTVDIWSVGCIMAEMLTGKPLFKGH  219 (343)
T ss_pred             C-----ccccccCCcccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence            2     223467899999998765 45889999999999999999999998653

Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12

>cd06623 PKc_MAPKK_plant_like Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

Probab=99.78  E-value=1.2e-19  Score=190.84  Aligned_cols=149  Identities=26%  Similarity=0.326  Sum_probs=123.7

Q ss_pred             cCCccceeeccC------------CeEEEEEEehHhhH-HHHHHHHHHHHHHhhcchhhHHH------------------
Q 045449          629 RFSENNLIGIGN------------GMEVAVKVFHQQYE-RALKSFEDECEVRKRIRHRNLVK------------------  677 (823)
Q Consensus       629 ~f~~~~~lg~g~------------~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~------------------  677 (823)
                      +|...+.+|.|+            +..||||++..... ...+.+.+|++.+.+++|+|+++                  
T Consensus         2 ~~~~~~~i~~g~~~~v~~~~~~~~~~~~~vk~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~   81 (264)
T cd06623           2 DLERVKVLGQGSSGVVYKVRHKPTGKIYALKKIHVDGDEEFRKQLLRELKTLRSCESPYVVKCYGAFYKEGEISIVLEYM   81 (264)
T ss_pred             cceeeeeeeecCCeEEEEEEEcCCCcEEEEEEeccCcchHHHHHHHHHHHHHHhcCCCCeeeEEEEEccCCeEEEEEEec
Confidence            455556666553            57799999876543 44578999999999999999998                  


Q ss_pred             ----------------------HHHHHHHHhhhcCC-CCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccc
Q 045449          678 ----------------------IISSSLEYLHFGHS-IPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQ  734 (823)
Q Consensus       678 ----------------------~~~~~l~~L~~~h~-~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~  734 (823)
                                            ++.|+++++.++|+ .+++|||++|+||+++.++.++|+|||.++........  ...
T Consensus        82 ~~~~L~~~l~~~~~l~~~~~~~~~~~l~~~l~~lh~~~~~~H~~l~~~ni~~~~~~~~~l~df~~~~~~~~~~~~--~~~  159 (264)
T cd06623          82 DGGSLADLLKKVGKIPEPVLAYIARQILKGLDYLHTKRHIIHRDIKPSNLLINSKGEVKIADFGISKVLENTLDQ--CNT  159 (264)
T ss_pred             CCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhccCCCccCCCCHHHEEECCCCCEEEccCccceecccCCCc--ccc
Confidence                                  35688899999999 99999999999999999999999999999876543321  123


Q ss_pred             cccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCCc
Q 045449          735 TLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGETC  779 (823)
Q Consensus       735 ~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~~  779 (823)
                      ..++..|+|||......++.++||||||++++++.+|..|+....
T Consensus       160 ~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~~l~tg~~p~~~~~  204 (264)
T cd06623         160 FVGTVTYMSPERIQGESYSYAADIWSLGLTLLECALGKFPFLPPG  204 (264)
T ss_pred             eeecccccCHhhhCCCCCCchhhHHHHHHHHHHHHhCCCCCcccc
Confidence            568899999999988889999999999999999999999986653

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of

>smart00219 TyrKc Tyrosine kinase, catalytic domain

Probab=99.78  E-value=2e-19  Score=188.27  Aligned_cols=136  Identities=29%  Similarity=0.438  Sum_probs=113.4

Q ss_pred             CeEEEEEEehHhhHH-HHHHHHHHHHHHhhcchhhHHH------------------------------------------
Q 045449          641 GMEVAVKVFHQQYER-ALKSFEDECEVRKRIRHRNLVK------------------------------------------  677 (823)
Q Consensus       641 ~~~vavK~~~~~~~~-~~~~~~~E~~~l~~l~h~niv~------------------------------------------  677 (823)
                      +..||+|++...... ..+.+..|++++.+++|+||++                                          
T Consensus        28 ~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~i~e~~~~~~l~~~~~~~~~~~~~~~~~~~  107 (258)
T smart00219       28 EVEVAVKTLKEDADEQQIEEFLREARIMRKLDHPNIVKLLGVCTEEEPLMIVMEYMEGGDLLDYLRKNRPKELSLSDLLS  107 (258)
T ss_pred             CceEEEEEccCCCChHHHHHHHHHHHHHHhcCCCchheEEEEEcCCCeeEEEEeccCCCCHHHHHHhhhhccCCHHHHHH
Confidence            377999999755432 5678999999999999999998                                          


Q ss_pred             HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccCCCccccccc
Q 045449          678 IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGD  757 (823)
Q Consensus       678 ~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~D  757 (823)
                      ++.|++.+|+++|+.+++||||||+||+++.++.++++|||+++.......... ....+++.|+|||......++.++|
T Consensus       108 ~~~ql~~~l~~lh~~~~~h~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~-~~~~~~~~y~~Pe~~~~~~~~~~~D  186 (258)
T smart00219      108 FALQIARGMEYLESKNFIHRDLAARNCLVGENLVVKISDFGLSRDLYDDDYYKK-KGGKLPIRWMAPESLKDGKFTSKSD  186 (258)
T ss_pred             HHHHHHHHHHHHhcCCeeecccccceEEEccCCeEEEcccCCceeccccccccc-ccCCCcccccChHHhccCCCCcchh
Confidence            245788899999999999999999999999999999999999987654422211 1233778999999998888999999


Q ss_pred             eehhhhhhccccC-CCCCcCC
Q 045449          758 VCSFGIISGGKET-RSMTVGE  777 (823)
Q Consensus       758 v~S~Gvv~~~~~~-~~~~~~~  777 (823)
                      |||+||+++++.+ |..|+..
T Consensus       187 i~slG~i~~~l~~~g~~p~~~  207 (258)
T smart00219      187 VWSFGVLLWEIFTLGESPYPG  207 (258)
T ss_pred             HHHHHHHHHHHHhCCCCCCCC
Confidence            9999999999987 6777754

Phosphotransferases. Tyrosine-specific kinase subfamily.

>cd06917 STKc_NAK1_like Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases

Probab=99.78  E-value=1.3e-19  Score=192.29  Aligned_cols=136  Identities=29%  Similarity=0.437  Sum_probs=113.1

Q ss_pred             CeEEEEEEehHhh-HHHHHHHHHHHHHHhhcc---hhhHHH---------------------------------------
Q 045449          641 GMEVAVKVFHQQY-ERALKSFEDECEVRKRIR---HRNLVK---------------------------------------  677 (823)
Q Consensus       641 ~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~---h~niv~---------------------------------------  677 (823)
                      +..||||++.... ....+++.+|++++++++   |||+++                                       
T Consensus        26 ~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~~~~~~~vi~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~l~~~~~~~  105 (277)
T cd06917          26 GRVVALKIINLDTPDDDVSDIQREVALLSQLRQSQPPNITKYYGSYLKGPRLWIIMEYAEGGSVRTLMKAGPIAEKYISV  105 (277)
T ss_pred             CcEEEEEEecCCCCchhHHHHHHHHHHHHHhccCCCCCeeeEeeeeeeCCEEEEEEecCCCCcHHHHHHccCCCHHHHHH
Confidence            5779999986432 344567889999999997   999997                                       


Q ss_pred             HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccCCC-cccccc
Q 045449          678 IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKG-RVSTRG  756 (823)
Q Consensus       678 ~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~  756 (823)
                      ++.+++++|.|+|+.+++||||+|+||+++.++.++++|||++........  ......|+..|+|||+...+ .++.++
T Consensus       106 i~~~i~~~l~~lh~~~i~H~dl~p~ni~i~~~~~~~l~dfg~~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~~  183 (277)
T cd06917         106 IIREVLVALKYIHKVGVIHRDIKAANILVTNTGNVKLCDFGVAALLNQNSS--KRSTFVGTPYWMAPEVITEGKYYDTKA  183 (277)
T ss_pred             HHHHHHHHHHHHHhCCcccCCcCHHHEEEcCCCCEEEccCCceeecCCCcc--ccccccCCcceeCHHHhccCCccccch
Confidence            356888899999999999999999999999999999999999987654332  22345689999999987654 468999


Q ss_pred             ceehhhhhhccccCCCCCcCCC
Q 045449          757 DVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       757 Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      |||||||++|++++|..||...
T Consensus       184 Dv~slG~~l~~ll~g~~p~~~~  205 (277)
T cd06917         184 DIWSLGITIYEMATGNPPYSDV  205 (277)
T ss_pred             hHHHHHHHHHHHHhCCCCCCCC
Confidence            9999999999999999998764

Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of cent

>cd05037 PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=99.78  E-value=2e-19  Score=188.64  Aligned_cols=130  Identities=20%  Similarity=0.287  Sum_probs=107.8

Q ss_pred             eEEEEEEehHhhHHHHHHHHHHHHHHhhcchhhHHH----------------------------------------HHHH
Q 045449          642 MEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVK----------------------------------------IISS  681 (823)
Q Consensus       642 ~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~----------------------------------------~~~~  681 (823)
                      ..||+|++...... ...|.+|++++++++||||++                                        ++.|
T Consensus        31 ~~v~~k~~~~~~~~-~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~  109 (259)
T cd05037          31 VSVVLKVLGSDHRD-SLAFFETASLMSQLSHKHLVKLYGVCVRDENIMVEEYVKFGPLDVFLHREKNNVSLHWKLDVAKQ  109 (259)
T ss_pred             eeeeeeccccchhh-HHHHHHHHHHHHcCCCcchhheeeEEecCCcEEEEEcCCCCcHHHHHHhhccCCCHHHHHHHHHH
Confidence            45788887655433 678999999999999999998                                        2458


Q ss_pred             HHHHhhhcCCCCEEeccCCCCCEEeCCCC-------cEEEeecccccccCCCCccccccccccCCCcCcccccCCC--cc
Q 045449          682 SLEYLHFGHSIPIIHCDLKPSNVLLDEDM-------VAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKG--RV  752 (823)
Q Consensus       682 ~l~~L~~~h~~~ivHrdlk~~NiLl~~~~-------~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~--~~  752 (823)
                      ++.+|.|+|+.+|+||||||+||+++.++       .+||+|||+++.....      ....++..|+|||++.+.  .+
T Consensus       110 i~~~l~~LH~~~i~H~dlkp~Nill~~~~~~~~~~~~~kl~Dfg~a~~~~~~------~~~~~~~~y~aPE~~~~~~~~~  183 (259)
T cd05037         110 LASALHYLEDKKLVHGNVCGKNILVARYGLNEGYVPFIKLSDPGIPITVLSR------EERVERIPWIAPECIRNGQASL  183 (259)
T ss_pred             HHHHHHHHhhCCeecccCccceEEEecCccccCCceeEEeCCCCcccccccc------cccccCCCccChhhhcCCCCCc
Confidence            88899999999999999999999999887       7999999999875431      224567889999998776  78


Q ss_pred             ccccceehhhhhhccccC-CCCCcCCC
Q 045449          753 STRGDVCSFGIISGGKET-RSMTVGET  778 (823)
Q Consensus       753 ~~~~Dv~S~Gvv~~~~~~-~~~~~~~~  778 (823)
                      +.++|||||||+++++.+ +..|+...
T Consensus       184 ~~~~Di~slG~~~~~l~~~~~~p~~~~  210 (259)
T cd05037         184 TIAADKWSFGTTLLEICSNGEEPLSTL  210 (259)
T ss_pred             chhhHHHHHHHHHHHHHhCCCCCcccC
Confidence            999999999999999988 46666554

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; pseudokinase domain (repeat1). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the ki

>cd05086 PTKc_Aatyk2 Catalytic domain of the Protein Tyrosine Kinase, Apoptosis-associated tyrosine kinase 2

Probab=99.78  E-value=3.3e-19  Score=188.14  Aligned_cols=136  Identities=17%  Similarity=0.285  Sum_probs=106.1

Q ss_pred             eEEEEEEehHhh-HHHHHHHHHHHHHHhhcchhhHHH-------------------------------------------
Q 045449          642 MEVAVKVFHQQY-ERALKSFEDECEVRKRIRHRNLVK-------------------------------------------  677 (823)
Q Consensus       642 ~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~-------------------------------------------  677 (823)
                      ..+++|.+.... ....+.|.+|+.++++++||||++                                           
T Consensus        23 ~~~~~k~~~~~~~~~~~~~~~~e~~~~~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~  102 (268)
T cd05086          23 ARVVVKELKANASSKEQNEFLQQGDPYRILQHPNILQCLGQCVEAIPYLLVFEYCELGDLKSYLSQEQWHRRNSQLLLLQ  102 (268)
T ss_pred             ceEEEEEecCCCChHHHHHHHHHHHHHhccCCcchhheEEEecCCCccEEEEecCCCCcHHHHHHhhhcccccccHHHHH
Confidence            456777765433 345578999999999999999998                                           


Q ss_pred             -HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccCC-------
Q 045449          678 -IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTK-------  749 (823)
Q Consensus       678 -~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-------  749 (823)
                       ++.|++.+|+|+|+.+++||||||+||+++.++.+||+|||+++...............|+..|+|||+...       
T Consensus       103 ~~~~~i~~al~~lH~~~i~H~dikp~nil~~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~  182 (268)
T cd05086         103 RMACEIAAGVTHMHKHNFLHSDLALRNCFLTSDLTVKVGDYGIGPSRYKEDYIETEDDKCVPLRWLAPELVGEFHGGLIT  182 (268)
T ss_pred             HHHHHHHHHHHHHHHCCeeccCCccceEEEcCCccEEecccccccccCcchhhhcccCCcCcccccCchhcccccCcccc
Confidence             235788899999999999999999999999999999999999865332222122234568899999998743       


Q ss_pred             CccccccceehhhhhhccccCC-CCCcCC
Q 045449          750 GRVSTRGDVCSFGIISGGKETR-SMTVGE  777 (823)
Q Consensus       750 ~~~~~~~Dv~S~Gvv~~~~~~~-~~~~~~  777 (823)
                      ..++.++|||||||+++++.++ ..||..
T Consensus       183 ~~~~~~~DiwslG~~l~el~~~~~~p~~~  211 (268)
T cd05086         183 AEQTKPSNVWALGVTLWELFENAAQPYSH  211 (268)
T ss_pred             CCCCCcchhHHHHHHHHHHHhCCCCCCCC
Confidence            2457899999999999999864 556654

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 2 (Aatyk2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk2 is a member of the Aatyk subfamily of proteins, which are receptor kinases containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk2 is also called lemur tyrosine kinase 2 (Lmtk2) or brain-enriched kinase (Brek). It is expressed at high levels in early postnatal brain, and has been shown to play a role in nerve growth factor (NGF) signaling. Studies with knockout mice reveal that Aatyk2 is essential for late stage

>cd07856 STKc_Sty1_Hog1 Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1

Probab=99.78  E-value=9.3e-20  Score=198.18  Aligned_cols=152  Identities=28%  Similarity=0.405  Sum_probs=125.6

Q ss_pred             HHHHHHhccCCccceeeccC------------CeEEEEEEehHhh--HHHHHHHHHHHHHHhhcchhhHHH---------
Q 045449          621 HELLRATDRFSENNLIGIGN------------GMEVAVKVFHQQY--ERALKSFEDECEVRKRIRHRNLVK---------  677 (823)
Q Consensus       621 ~~l~~at~~f~~~~~lg~g~------------~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~---------  677 (823)
                      .++..++++|+..+.||.|+            +..||||++....  ....+.+.+|++++++++||||++         
T Consensus         3 ~~~~~~~~~y~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~   82 (328)
T cd07856           3 GTVFEITNRYVDLQPVGMGAFGLVCSARDQLTGQNVAIKKIMKPFSTPVLAKRTYRELKLLKHLRHENIISLSDIFISPL   82 (328)
T ss_pred             cceeccccceEEEEeecccCCeEEEEEEECCCCCEEEEEEecccccccchhHHHHHHHHHHHhcCCCCeeeEeeeEecCC
Confidence            45566788898888898874            5679999875422  233467889999999999999998         


Q ss_pred             ------------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCC
Q 045449          678 ------------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGED  727 (823)
Q Consensus       678 ------------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~  727 (823)
                                                    ++.|++++|.|+|+.+|+||||||+||+++.++.+||+|||.++..... 
T Consensus        83 ~~~~lv~e~~~~~L~~~~~~~~~~~~~~~~~~~ql~~aL~~LH~~~iiH~dl~p~Nili~~~~~~~l~dfg~~~~~~~~-  161 (328)
T cd07856          83 EDIYFVTELLGTDLHRLLTSRPLEKQFIQYFLYQILRGLKYVHSAGVVHRDLKPSNILINENCDLKICDFGLARIQDPQ-  161 (328)
T ss_pred             CcEEEEeehhccCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEeECCCCCEEeCccccccccCCC-
Confidence                                          3578889999999999999999999999999999999999998864321 


Q ss_pred             ccccccccccCCCcCcccccCC-CccccccceehhhhhhccccCCCCCcCC
Q 045449          728 QLSKQTQTLATIGYMAPEYGTK-GRVSTRGDVCSFGIISGGKETRSMTVGE  777 (823)
Q Consensus       728 ~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~  777 (823)
                          .....++..|+|||++.+ ..++.++|||||||+++++.+|..||..
T Consensus       162 ----~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~el~tg~~~f~~  208 (328)
T cd07856         162 ----MTGYVSTRYYRAPEIMLTWQKYDVEVDIWSAGCIFAEMLEGKPLFPG  208 (328)
T ss_pred             ----cCCCcccccccCceeeeccCCcCcHHHHHHHHHHHHHHHhCCCCCCC
Confidence                123467889999998765 5689999999999999999999988854

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and U

>cd07845 STKc_CDK10 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10

Probab=99.77  E-value=9.7e-20  Score=196.51  Aligned_cols=150  Identities=29%  Similarity=0.311  Sum_probs=119.6

Q ss_pred             hccCCccceeeccC------------CeEEEEEEehHhh--HHHHHHHHHHHHHHhhcchhhHHH---------------
Q 045449          627 TDRFSENNLIGIGN------------GMEVAVKVFHQQY--ERALKSFEDECEVRKRIRHRNLVK---------------  677 (823)
Q Consensus       627 t~~f~~~~~lg~g~------------~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~---------------  677 (823)
                      .++|...+.||.|+            |..||+|+++...  ......+.+|++++++++|+||++               
T Consensus         6 ~~~y~~~~~ig~g~~~~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~l   85 (309)
T cd07845           6 VTEFEKLNRIGEGTYGIVYRARDTTSGEIVALKKVRMDNERDGIPISSLREITLLLNLRHPNIVELKEVVVGKHLDSIFL   85 (309)
T ss_pred             ccceeEeeeeeecCCEEEEEEEECCCCcEEEEEEEEeccCCCCCcchhhHHHHHHHhCCCCCCcceEEEEecCCCCeEEE
Confidence            35666667777764            6779999986432  122235678999999999999987               


Q ss_pred             ---------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccc
Q 045449          678 ---------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLS  730 (823)
Q Consensus       678 ---------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~  730 (823)
                                                 ++.|++++|+|+|+.+++||||||+||+++.++.+||+|||+++.......  
T Consensus        86 v~e~~~~~l~~~l~~~~~~l~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~nil~~~~~~~kL~dfg~~~~~~~~~~--  163 (309)
T cd07845          86 VMEYCEQDLASLLDNMPTPFSESQVKCLMLQLLRGLQYLHENFIIHRDLKVSNLLLTDKGCLKIADFGLARTYGLPAK--  163 (309)
T ss_pred             EEecCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEECCCCCEEECccceeeecCCccC--
Confidence                                       356888999999999999999999999999999999999999987653321  


Q ss_pred             cccccccCCCcCcccccCC-CccccccceehhhhhhccccCCCCCcCCC
Q 045449          731 KQTQTLATIGYMAPEYGTK-GRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       731 ~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      ......+++.|+|||++.+ ..++.++||||+||++|++.+|..||...
T Consensus       164 ~~~~~~~~~~y~aPE~~~~~~~~~~~~DvwslG~il~el~~g~~~f~~~  212 (309)
T cd07845         164 PMTPKVVTLWYRAPELLLGCTTYTTAIDMWAVGCILAELLAHKPLLPGK  212 (309)
T ss_pred             CCCcccccccccChhhhcCCCCcCchHHHHHHHHHHHHHHhCCCCCCCC
Confidence            1223456888999998765 45789999999999999999999888643

Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing

>cd07858 STKc_TEY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants

Probab=99.77  E-value=1.8e-19  Score=196.86  Aligned_cols=149  Identities=28%  Similarity=0.352  Sum_probs=120.5

Q ss_pred             hccCCccceeeccC------------CeEEEEEEehHhh--HHHHHHHHHHHHHHhhcchhhHHH---------------
Q 045449          627 TDRFSENNLIGIGN------------GMEVAVKVFHQQY--ERALKSFEDECEVRKRIRHRNLVK---------------  677 (823)
Q Consensus       627 t~~f~~~~~lg~g~------------~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~---------------  677 (823)
                      .++|...+.+|.|+            +..||||.+....  ......+.+|+.++++++|+||++               
T Consensus         4 ~~~y~~~~~lg~G~~~~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~ni~~~~~~~~~~~~~~~~~   83 (337)
T cd07858           4 DTKYVPIKPIGRGAYGIVCSAKNSETNEKVAIKKIANAFDNRIDAKRTLREIKLLRHLDHENVIAIKDIMPPPHREAFND   83 (337)
T ss_pred             ccceeEEEEeccCCCeEEEEEEecCCCCeEEEEEecccccccchhHHHHHHHHHHHhcCCCCccchHHheecccccccCc
Confidence            34667777777774            5679999886432  233456788999999999999986               


Q ss_pred             -----------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCc
Q 045449          678 -----------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQ  728 (823)
Q Consensus       678 -----------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~  728 (823)
                                                   ++.|++.+|+|+|+.+++||||||+||+++.++.+||+|||+++.......
T Consensus        84 ~~lv~e~~~~~L~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~i~H~dlkp~Nil~~~~~~~kL~Dfg~~~~~~~~~~  163 (337)
T cd07858          84 VYIVYELMDTDLHQIIRSSQTLSDDHCQYFLYQLLRGLKYIHSANVLHRDLKPSNLLLNANCDLKICDFGLARTTSEKGD  163 (337)
T ss_pred             EEEEEeCCCCCHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHEEEcCCCCEEECcCccccccCCCcc
Confidence                                         246888999999999999999999999999999999999999987643321


Q ss_pred             cccccccccCCCcCcccccCC-CccccccceehhhhhhccccCCCCCcCC
Q 045449          729 LSKQTQTLATIGYMAPEYGTK-GRVSTRGDVCSFGIISGGKETRSMTVGE  777 (823)
Q Consensus       729 ~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~  777 (823)
                        ......++..|+|||++.. ..++.++|||||||+++++.+|..||..
T Consensus       164 --~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~  211 (337)
T cd07858         164 --FMTEYVVTRWYRAPELLLNCSEYTTAIDVWSVGCIFAELLGRKPLFPG  211 (337)
T ss_pred             --cccccccccCccChHHHhcCCCCCCcccHHHHHHHHHHHHcCCCCCCC
Confidence              1234568899999998765 4589999999999999999999998854

Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activati

>cd06634 STKc_TAO2 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2

Probab=99.77  E-value=1.3e-19  Score=195.26  Aligned_cols=132  Identities=27%  Similarity=0.363  Sum_probs=110.3

Q ss_pred             CeEEEEEEehHh---hHHHHHHHHHHHHHHhhcchhhHHH----------------------------------------
Q 045449          641 GMEVAVKVFHQQ---YERALKSFEDECEVRKRIRHRNLVK----------------------------------------  677 (823)
Q Consensus       641 ~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~----------------------------------------  677 (823)
                      +..||+|.+...   .....+++.+|++++++++|+|+++                                        
T Consensus        40 ~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~l~~~~~~~~~~l~~~~~~~  119 (308)
T cd06634          40 SEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLVMEYCLGSASDLLEVHKKPLQEVEIAA  119 (308)
T ss_pred             CcEEEEEEEecccccChHHHHHHHHHHHHHHhCCCCCcccEEEEEEcCCeeEEEEEccCCCHHHHHHHcCCCCCHHHHHH
Confidence            567999988532   2344567889999999999999988                                        


Q ss_pred             HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccC---CCcccc
Q 045449          678 IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGT---KGRVST  754 (823)
Q Consensus       678 ~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~---~~~~~~  754 (823)
                      ++.++++++.|+|+.+++||||||+||+++.++.+||+|||++......      ....|++.|+|||++.   .+.++.
T Consensus       120 ~~~~l~~~l~~LH~~~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~~------~~~~~~~~y~aPE~~~~~~~~~~~~  193 (308)
T cd06634         120 VTHGALQGLAYLHSHNMIHRDVKAGNILLSEPGLVKLGDFGSASIMAPA------NXFVGTPYWMAPEVILAMDEGQYDG  193 (308)
T ss_pred             HHHHHHHHHHHHHhCCcccCCCCHHhEEECCCCcEEECCcccceeecCc------ccccCCccccCHHHHhhcccCCCCc
Confidence            2567888999999999999999999999999999999999998765422      2346889999999874   356788


Q ss_pred             ccceehhhhhhccccCCCCCcCCC
Q 045449          755 RGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       755 ~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      ++|||||||+++++.+|..|+...
T Consensus       194 ~~Di~slG~il~el~~g~~p~~~~  217 (308)
T cd06634         194 KVDVWSLGITCIELAERKPPLFNM  217 (308)
T ss_pred             ccchHHHHHHHHHHHcCCCCCccc
Confidence            999999999999999999998653

Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activatin

>cd07857 STKc_MPK1 Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1

Probab=99.77  E-value=1.8e-19  Score=196.45  Aligned_cols=137  Identities=28%  Similarity=0.303  Sum_probs=111.4

Q ss_pred             CeEEEEEEehHhh--HHHHHHHHHHHHHHhhc-chhhHHH----------------------------------------
Q 045449          641 GMEVAVKVFHQQY--ERALKSFEDECEVRKRI-RHRNLVK----------------------------------------  677 (823)
Q Consensus       641 ~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l-~h~niv~----------------------------------------  677 (823)
                      +..||||++....  ....+.+.+|++++.++ .||||++                                        
T Consensus        27 ~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~~~~~~~~e~~~~~L~~~l~~~~~~~~~~  106 (332)
T cd07857          27 EETVAIKKITNVFSKKILAKRALRELKLLRHFRGHKNITCLYDMDIVFPGNFNELYLYEELMEADLHQIIRSGQPLTDAH  106 (332)
T ss_pred             CceEEEEEeccccccchhHHHHHHHHHHHHHhcCCCChheeeeeeeeccccCCcEEEEEecccCCHHHHHhcCCCCCHHH
Confidence            4679999886432  22346788999999999 5999998                                        


Q ss_pred             ---HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCcc--ccccccccCCCcCcccccCC-Cc
Q 045449          678 ---IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQL--SKQTQTLATIGYMAPEYGTK-GR  751 (823)
Q Consensus       678 ---~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~--~~~~~~~gt~~y~aPE~~~~-~~  751 (823)
                         ++.|++.+|.|+|+.||+||||||+||+++.++.+||+|||+++........  .......||..|+|||+..+ ..
T Consensus       107 ~~~~~~qi~~aL~~LH~~givH~dlkp~Nili~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~  186 (332)
T cd07857         107 FQSFIYQILCGLKYIHSANVLHRDLKPGNLLVNADCELKICDFGLARGFSENPGENAGFMTEYVATRWYRAPEIMLSFQS  186 (332)
T ss_pred             HHHHHHHHHHHHHHHHhCCcccCCCCHHHeEEcCCCCEEeCcCCCceecccccccccccccCcccCccccCcHHHhCCCC
Confidence               2468889999999999999999999999999999999999999865432211  11233578999999998765 46


Q ss_pred             cccccceehhhhhhccccCCCCCcCC
Q 045449          752 VSTRGDVCSFGIISGGKETRSMTVGE  777 (823)
Q Consensus       752 ~~~~~Dv~S~Gvv~~~~~~~~~~~~~  777 (823)
                      ++.++||||+||+++++++|..||..
T Consensus       187 ~~~~~Di~slGv~l~~l~~g~~pf~~  212 (332)
T cd07857         187 YTKAIDVWSVGCILAELLGRKPVFKG  212 (332)
T ss_pred             CCcHHHHHHHHHHHHHHHhCCcCCCC
Confidence            89999999999999999999988865

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall co

>cd06608 STKc_myosinIII_like Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases

Probab=99.77  E-value=1.9e-19  Score=190.48  Aligned_cols=150  Identities=25%  Similarity=0.384  Sum_probs=120.8

Q ss_pred             HhccCCccceeeccC------------CeEEEEEEehHhhHHHHHHHHHHHHHHhhc-chhhHHH---------------
Q 045449          626 ATDRFSENNLIGIGN------------GMEVAVKVFHQQYERALKSFEDECEVRKRI-RHRNLVK---------------  677 (823)
Q Consensus       626 at~~f~~~~~lg~g~------------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~---------------  677 (823)
                      ++++|...+.+|.|+            +..||+|++..... ..++|.+|+++++++ .|+||++               
T Consensus         4 ~~~~y~~~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~-~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~~~~   82 (275)
T cd06608           4 PTGIFELVEVIGEGTYGKVYKARHKKTGQLVAIKIMDIIED-EEEEIKEEYNILRKYSNHPNIATFYGAFIKKNPPGNDD   82 (275)
T ss_pred             chhheeheeeecCCCCeEEEEEEECCCCcEEEEEEEecCch-hHHHHHHHHHHHHHhcCCCChheEEEEEEecCCCCcce
Confidence            456777777777764            56799998875543 346799999999999 6999876               


Q ss_pred             -----------------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccc
Q 045449          678 -----------------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKL  722 (823)
Q Consensus       678 -----------------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~  722 (823)
                                                         ++.|++++|.|+|+.+++||||+|+||++++++.+||+|||++..
T Consensus        83 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~ql~~al~~lH~~~i~H~~l~p~ni~~~~~~~~~l~d~~~~~~  162 (275)
T cd06608          83 QLWLVMELCGGGSVTDLVKGLRKKGKRLKEEWIAYILRETLRGLAYLHENKVIHRDIKGQNILLTKNAEVKLVDFGVSAQ  162 (275)
T ss_pred             EEEEEEEcCCCCcHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHhcCCcccCCCCHHHEEEccCCeEEECCCcccee
Confidence                                               245788899999999999999999999999999999999999876


Q ss_pred             cCCCCccccccccccCCCcCcccccCC-----CccccccceehhhhhhccccCCCCCcCCC
Q 045449          723 LSGEDQLSKQTQTLATIGYMAPEYGTK-----GRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       723 ~~~~~~~~~~~~~~gt~~y~aPE~~~~-----~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      .....  .......|+..|+|||++..     ..++.++||||+||+++++.+|..||...
T Consensus       163 ~~~~~--~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~  221 (275)
T cd06608         163 LDSTL--GRRNTFIGTPYWMAPEVIACDEQPDASYDARSDVWSLGITAIELADGKPPLCDM  221 (275)
T ss_pred             cccch--hhhcCccccccccCHhHhcccccccCCccccccHHHhHHHHHHHHhCCCCcccc
Confidence            54322  12234568999999998753     34688999999999999999999998653

Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin I

>cd07832 STKc_CCRK Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

Probab=99.77  E-value=2.2e-19  Score=191.34  Aligned_cols=136  Identities=29%  Similarity=0.319  Sum_probs=112.6

Q ss_pred             CeEEEEEEehHhh--HHHHHHHHHHHHHHhhcchhhHHH----------------------------------------H
Q 045449          641 GMEVAVKVFHQQY--ERALKSFEDECEVRKRIRHRNLVK----------------------------------------I  678 (823)
Q Consensus       641 ~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~----------------------------------------~  678 (823)
                      |..||||++....  ....+.+.+|+.++++++||||++                                        +
T Consensus        25 ~~~~~vK~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~~v~e~~~~~L~~~~~~~~~~~~~~~~~~~  104 (286)
T cd07832          25 GETVALKKVALRRLEGGIPNQALREIKALQACQHPYVVKLLDVFPHGSGFVLVMEYMPSDLSEVLRDEERPLPEAQVKSY  104 (286)
T ss_pred             CceEEEEEEEcccccchhhHHHHHHHHHHHhCCCCCCcceeeEEecCCeeEEEecccCCCHHHHHHhcCCCCCHHHHHHH
Confidence            5789999987543  334578999999999999999998                                        2


Q ss_pred             HHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccCCCc-cccccc
Q 045449          679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGR-VSTRGD  757 (823)
Q Consensus       679 ~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~-~~~~~D  757 (823)
                      +.|++++|.|+|+.+++|+||||+||+++.++.++++|||+++....... .......|+..|+|||++.+.. ++.++|
T Consensus       105 ~~~i~~~l~~lH~~~i~H~dl~p~ni~~~~~~~~~l~dfg~~~~~~~~~~-~~~~~~~~~~~y~aPE~~~~~~~~~~~~D  183 (286)
T cd07832         105 MRMLLKGVAYMHANGIMHRDLKPANLLISADGVLKIADFGLARLFSEEEP-RLYSHQVATRWYRAPELLYGARKYDPGVD  183 (286)
T ss_pred             HHHHHHHHHHHHHCCeecCCcCHHHEEEcCCCcEEEeeeeecccccCCCC-CccccccCcccccCceeeeccccCCchhH
Confidence            46788899999999999999999999999999999999999987654322 1223456899999999876544 689999


Q ss_pred             eehhhhhhccccCCCCCcCC
Q 045449          758 VCSFGIISGGKETRSMTVGE  777 (823)
Q Consensus       758 v~S~Gvv~~~~~~~~~~~~~  777 (823)
                      |||+||+++++.+|..+|..
T Consensus       184 i~slG~~l~~l~tg~~~~~~  203 (286)
T cd07832         184 LWAVGCIFAELLNGSPLFPG  203 (286)
T ss_pred             HHHHHHHHHHHHcCCcCcCC
Confidence            99999999999999777754

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of hea

>cd05047 PTKc_Tie Catalytic domain of Tie Protein Tyrosine Kinases

Probab=99.77  E-value=2e-19  Score=190.06  Aligned_cols=134  Identities=24%  Similarity=0.318  Sum_probs=107.0

Q ss_pred             eEEEEEEehHhh-HHHHHHHHHHHHHHhhc-chhhHHH------------------------------------------
Q 045449          642 MEVAVKVFHQQY-ERALKSFEDECEVRKRI-RHRNLVK------------------------------------------  677 (823)
Q Consensus       642 ~~vavK~~~~~~-~~~~~~~~~E~~~l~~l-~h~niv~------------------------------------------  677 (823)
                      ..+|+|.+.... ....+.|.+|++++.++ +||||++                                          
T Consensus        23 ~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~  102 (270)
T cd05047          23 MDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIA  102 (270)
T ss_pred             eEEEEEEccccCCHHHHHHHHHHHHHHHhhccCCCeeeEEEEEecCCCceEEEEeCCCCcHHHHHHhccccccccccccc
Confidence            457889887432 44556899999999999 7999876                                          


Q ss_pred             --------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCc
Q 045449          678 --------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMA  743 (823)
Q Consensus       678 --------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~a  743 (823)
                                    ++.|++.++.|+|+.+++||||||+||++++++.+|++|||+++.....   ........+..|+|
T Consensus       103 ~~~~~~l~~~~~~~~~~~i~~al~~lH~~~i~H~dikp~nili~~~~~~kl~dfgl~~~~~~~---~~~~~~~~~~~y~a  179 (270)
T cd05047         103 NSTASTLSSQQLLHFAADVARGMDYLSQKQFIHRDLAARNILVGENYVAKIADFGLSRGQEVY---VKKTMGRLPVRWMA  179 (270)
T ss_pred             cCCcCCCCHHHHHHHHHHHHHHHHHHHHCCEeecccccceEEEcCCCeEEECCCCCccccchh---hhccCCCCccccCC
Confidence                          2346777899999999999999999999999999999999998643211   11112234667999


Q ss_pred             ccccCCCccccccceehhhhhhccccC-CCCCcCCC
Q 045449          744 PEYGTKGRVSTRGDVCSFGIISGGKET-RSMTVGET  778 (823)
Q Consensus       744 PE~~~~~~~~~~~Dv~S~Gvv~~~~~~-~~~~~~~~  778 (823)
                      ||+.....++.++|||||||+++++.+ |..||.+.
T Consensus       180 pE~~~~~~~~~~~Di~slG~il~el~~~g~~pf~~~  215 (270)
T cd05047         180 IESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGM  215 (270)
T ss_pred             hHHHccCCCCchhhHHHHHHHHHHHHcCCCCCcccc
Confidence            999988889999999999999999996 88888653

Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific l

>cd08528 STKc_Nek10 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10

Probab=99.77  E-value=2.1e-19  Score=189.77  Aligned_cols=135  Identities=30%  Similarity=0.401  Sum_probs=111.3

Q ss_pred             CeEEEEEEehHh----------hHHHHHHHHHHHHHHhh-cchhhHHH--------------------------------
Q 045449          641 GMEVAVKVFHQQ----------YERALKSFEDECEVRKR-IRHRNLVK--------------------------------  677 (823)
Q Consensus       641 ~~~vavK~~~~~----------~~~~~~~~~~E~~~l~~-l~h~niv~--------------------------------  677 (823)
                      +..||||.+...          ......++.+|+.++.+ ++||||++                                
T Consensus        26 ~~~~avk~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~lv~e~~~~~~l~~~l~~~~~  105 (269)
T cd08528          26 QNLLALKEINVHNPAFGKDKRERDKSIGDIVSEVTIIKEQLRHPNIVRYYKTFLENDRLYIVMDLIEGAPLGEHFNSLKE  105 (269)
T ss_pred             CceeeeeEeeccccccccccccchHHHHHHHHHHHHHhhcCCCCCeeeEEeeEccCCeEEEEEecCCCCcHHHHHHHHHh
Confidence            467999987532          23445678889988875 79999998                                


Q ss_pred             ------------HHHHHHHHhhhcCC-CCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcc
Q 045449          678 ------------IISSSLEYLHFGHS-IPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAP  744 (823)
Q Consensus       678 ------------~~~~~l~~L~~~h~-~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aP  744 (823)
                                  ++.|++.+|.|+|. .+++||||||+||+++.++.+||+|||.+.......   ......|+..|+||
T Consensus       106 ~~~~~~~~~~~~~~~~l~~~l~~lh~~~~i~H~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~---~~~~~~~~~~~~~P  182 (269)
T cd08528         106 KKQRFTEERIWNIFVQMVLALRYLHKEKRIVHRDLTPNNIMLGEDDKVTITDFGLAKQKQPES---KLTSVVGTILYSCP  182 (269)
T ss_pred             ccCCCCHHHHHHHHHHHHHHHHHhccCCceeecCCCHHHEEECCCCcEEEecccceeeccccc---ccccccCcccCcCh
Confidence                        24578888999995 789999999999999999999999999998754332   22345689999999


Q ss_pred             cccCCCccccccceehhhhhhccccCCCCCcCCC
Q 045449          745 EYGTKGRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       745 E~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      |+..++.++.++|||||||++|++.+|..||...
T Consensus       183 e~~~~~~~~~~~Dv~slG~ll~~l~~g~~p~~~~  216 (269)
T cd08528         183 EIVKNEPYGEKADVWAFGCILYQMCTLQPPFYST  216 (269)
T ss_pred             hhhcCCCCchHHHHHHHHHHHHHHHhCCCccccc
Confidence            9999888999999999999999999999998654

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24.

>cd05044 PTKc_c-ros Catalytic domain of the Protein Tyrosine Kinase, C-ros

Probab=99.77  E-value=1e-19  Score=192.12  Aligned_cols=137  Identities=29%  Similarity=0.395  Sum_probs=111.5

Q ss_pred             eEEEEEEehHhh-HHHHHHHHHHHHHHhhcchhhHHH-------------------------------------------
Q 045449          642 MEVAVKVFHQQY-ERALKSFEDECEVRKRIRHRNLVK-------------------------------------------  677 (823)
Q Consensus       642 ~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~-------------------------------------------  677 (823)
                      ..||||.+.... ......|.+|++++++++||||++                                           
T Consensus        27 ~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~  106 (269)
T cd05044          27 IRVAVKTLRKGATDQEKKEFLKEAHLMSNFNHPNIVKLLGVCLLNEPQYIIMELMEGGDLLSYLRDARVERFGPPLLTLK  106 (269)
T ss_pred             eeehhhhhhcccchhhHHHHHHHHHHHHhcCCCCeeeEeeeecCCCCeEEEEeccCCCcHHHHHHHhhhcccCCccccHH
Confidence            678999876443 234568999999999999999997                                           


Q ss_pred             ----HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCC-----cEEEeecccccccCCCCccccccccccCCCcCcccccC
Q 045449          678 ----IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDM-----VAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGT  748 (823)
Q Consensus       678 ----~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~-----~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~  748 (823)
                          ++.|++.+|+|+|+.+++|+|+||+||+++.+.     .+|++|||+++...............++..|+|||++.
T Consensus       107 ~~~~~~~~l~~~l~~lH~~~i~H~dl~p~nil~~~~~~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~  186 (269)
T cd05044         107 ELLDICLDVAKGCVYLEQMHFIHRDLAARNCLVSEKGYDADRVVKIGDFGLARDIYKSDYYRKEGEGLLPVRWMAPESLL  186 (269)
T ss_pred             HHHHHHHHHHHHHHHHHhCCcccCCCChheEEEecCCCCCCcceEECCcccccccccccccccCcccCCCccccCHHHHc
Confidence                134677888999999999999999999999877     89999999998664333222222345678999999999


Q ss_pred             CCccccccceehhhhhhccccC-CCCCcCCC
Q 045449          749 KGRVSTRGDVCSFGIISGGKET-RSMTVGET  778 (823)
Q Consensus       749 ~~~~~~~~Dv~S~Gvv~~~~~~-~~~~~~~~  778 (823)
                      ++.++.++|||||||++|++++ |..||...
T Consensus       187 ~~~~~~~~Dv~slG~il~ellt~g~~p~~~~  217 (269)
T cd05044         187 DGKFTTQSDVWSFGVLMWEILTLGQQPYPAL  217 (269)
T ss_pred             cCCcccchhHHHHHHHHHHHHHcCCCCCccc
Confidence            8999999999999999999997 88888653

Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male

>PLN00009 cyclin-dependent kinase A; Provisional

Probab=99.77  E-value=1.9e-19  Score=192.78  Aligned_cols=135  Identities=26%  Similarity=0.330  Sum_probs=109.6

Q ss_pred             CeEEEEEEehHhh--HHHHHHHHHHHHHHhhcchhhHHH-----------------------------------------
Q 045449          641 GMEVAVKVFHQQY--ERALKSFEDECEVRKRIRHRNLVK-----------------------------------------  677 (823)
Q Consensus       641 ~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~-----------------------------------------  677 (823)
                      ++.||+|.+....  ....+.+.+|++++++++|+||++                                         
T Consensus        27 ~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~  106 (294)
T PLN00009         27 NETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKRLYLVFEYLDLDLKKHMDSSPDFAKNPRLIKT  106 (294)
T ss_pred             CcEEEEEehhhccccccchHHHHHHHHHHHhccCCCEeeEEEEEecCCeEEEEEecccccHHHHHHhCCCCCcCHHHHHH
Confidence            5679999886432  233467889999999999999988                                         


Q ss_pred             HHHHHHHHhhhcCCCCEEeccCCCCCEEeCC-CCcEEEeecccccccCCCCccccccccccCCCcCcccccCCC-ccccc
Q 045449          678 IISSSLEYLHFGHSIPIIHCDLKPSNVLLDE-DMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKG-RVSTR  755 (823)
Q Consensus       678 ~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~-~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~  755 (823)
                      ++.|++++|+|+|+.+++||||||+||+++. ++.+||+|||+++......  .......+++.|+|||++.+. .++.+
T Consensus       107 ~~~qi~~aL~~LH~~~i~H~dl~p~nill~~~~~~~kl~dfg~~~~~~~~~--~~~~~~~~~~~y~~PE~~~~~~~~~~~  184 (294)
T PLN00009        107 YLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPV--RTFTHEVVTLWYRAPEILLGSRHYSTP  184 (294)
T ss_pred             HHHHHHHHHHHHHhCCeeCCCCCcceEEEECCCCEEEEcccccccccCCCc--cccccCceeecccCHHHHhCCCCCCcH
Confidence            2458899999999999999999999999985 5679999999997653221  112334678999999987664 57899


Q ss_pred             cceehhhhhhccccCCCCCcCC
Q 045449          756 GDVCSFGIISGGKETRSMTVGE  777 (823)
Q Consensus       756 ~Dv~S~Gvv~~~~~~~~~~~~~  777 (823)
                      +||||+||+++++++|..||..
T Consensus       185 ~Dv~slG~i~~~l~tg~~pf~~  206 (294)
T PLN00009        185 VDIWSVGCIFAEMVNQKPLFPG  206 (294)
T ss_pred             HHHHHHHHHHHHHHhCCCCCCC
Confidence            9999999999999999998854

>cd07866 STKc_BUR1 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins

Probab=99.77  E-value=1.4e-19  Score=195.42  Aligned_cols=152  Identities=26%  Similarity=0.338  Sum_probs=120.0

Q ss_pred             hccCCccceeeccC------------CeEEEEEEehHhh--HHHHHHHHHHHHHHhhcchhhHHHH--------------
Q 045449          627 TDRFSENNLIGIGN------------GMEVAVKVFHQQY--ERALKSFEDECEVRKRIRHRNLVKI--------------  678 (823)
Q Consensus       627 t~~f~~~~~lg~g~------------~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~~--------------  678 (823)
                      .++|...+.||.|+            +..||||++....  ......+.+|++++++++|+||+++              
T Consensus         7 ~~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~   86 (311)
T cd07866           7 LRDYEILGKLGEGTFGEVYKARQIKTGRVVALKKILMHNEKDGFPITALREIKILKKLKHPNVVPLIDMAVERPDKSKRK   86 (311)
T ss_pred             cccEEEEEEeccCCCEEEEEEEECCCCcEEEEEEEEeccCCCCcchhHHHHHHHHHhcCCCCccchhhheeccccccccc
Confidence            46777777888775            5679999885432  1223467889999999999999972              


Q ss_pred             ----------------------------------HHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccC
Q 045449          679 ----------------------------------ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLS  724 (823)
Q Consensus       679 ----------------------------------~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~  724 (823)
                                                        +.|++++|.|+|+.+++|||+||+||+++.++.+||+|||+++...
T Consensus        87 ~~~~~lv~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~l~~al~~lH~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~  166 (311)
T cd07866          87 RGSVYMVTPYMDHDLSGLLENPSVKLTESQIKCYMLQLLEGINYLHENHILHRDIKAANILIDNQGILKIADFGLARPYD  166 (311)
T ss_pred             CceEEEEEecCCcCHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEECCCCCEEECcCccchhcc
Confidence                                              3577889999999999999999999999999999999999998654


Q ss_pred             CCCcc---------ccccccccCCCcCcccccCCC-ccccccceehhhhhhccccCCCCCcCCC
Q 045449          725 GEDQL---------SKQTQTLATIGYMAPEYGTKG-RVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       725 ~~~~~---------~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      .....         ...+...|++.|+|||++.+. .++.++|||||||+++++.+|..||.+.
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~el~~g~~~~~~~  230 (311)
T cd07866         167 GPPPNPKGGGGGGTRKYTNLVVTRWYRPPELLLGERRYTTAVDIWGIGCVFAEMFTRRPILQGK  230 (311)
T ss_pred             CCCcccccCCcccccccccceeccCcCChHHhhCCCccCchhHhHHHHHHHHHHHhCCCCCCCC
Confidence            32211         111234678899999987654 5799999999999999999999888643

Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic

>cd08216 PK_STRAD Pseudokinase domain of STE20-related kinase adapter protein

Probab=99.77  E-value=4.7e-19  Score=191.63  Aligned_cols=140  Identities=20%  Similarity=0.291  Sum_probs=114.6

Q ss_pred             cCCeEEEEEEehHh--hHHHHHHHHHHHHHHhhcchhhHHH---------------------------------------
Q 045449          639 GNGMEVAVKVFHQQ--YERALKSFEDECEVRKRIRHRNLVK---------------------------------------  677 (823)
Q Consensus       639 g~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~---------------------------------------  677 (823)
                      ..++.||||++...  .....+.+.+|++++++++|+||++                                       
T Consensus        23 ~~~~~~avK~~~~~~~~~~~~~~~~~Ei~~l~~l~h~~i~~~~~~~~~~~~~~~~~e~~~~~~l~~~l~~~~~~~~~~~~  102 (314)
T cd08216          23 PTNTLVAVKKINLDSCSKEDLKLLQQEIITSRQLQHPNILPYVTSFIVDSELYVVSPLMAYGSCEDLLKTHFPEGLPELA  102 (314)
T ss_pred             CCCCEEEEEEEeccccchhHHHHHHHHHHHHHhcCCcchhhhhheeecCCeEEEEEeccCCCCHHHHHHHhcccCCCHHH
Confidence            34788999998654  3445678999999999999999998                                       


Q ss_pred             ---HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCc-----cccccccccCCCcCcccccCC
Q 045449          678 ---IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQ-----LSKQTQTLATIGYMAPEYGTK  749 (823)
Q Consensus       678 ---~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~-----~~~~~~~~gt~~y~aPE~~~~  749 (823)
                         ++.|++.+|.|+|+.+|+||||||+||+++.++.+|++|||.+........     ........++..|+|||++..
T Consensus       103 ~~~~~~~l~~~L~~LH~~~ivH~dlk~~Nili~~~~~~kl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~  182 (314)
T cd08216         103 IAFILKDVLNALDYIHSKGFIHRSVKASHILLSGDGKVVLSGLRYSVSMIKHGKRQRVVHDFPKSSVKNLPWLSPEVLQQ  182 (314)
T ss_pred             HHHHHHHHHHHHHHHHHCCeecCCCCcceEEEecCCceEEecCccceeeccccccccccccccccccccccccCHHHhcC
Confidence               246788899999999999999999999999999999999998876532211     011123457889999999865


Q ss_pred             --CccccccceehhhhhhccccCCCCCcCCC
Q 045449          750 --GRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       750 --~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                        ..++.++|||||||+++++.+|..||...
T Consensus       183 ~~~~~~~~~Diws~G~il~el~~g~~pf~~~  213 (314)
T cd08216         183 NLQGYNEKSDIYSVGITACELANGHVPFKDM  213 (314)
T ss_pred             CCCCCCcchhHHHHHHHHHHHHhCCCCCCCC
Confidence              35889999999999999999999999754

Protein Kinase family, STE20-related kinase adapter protein (STRAD) subfamily, pseudokinase domain. The STRAD subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpigmentation of the buc

>cd05078 PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=99.77  E-value=1.3e-19  Score=190.08  Aligned_cols=131  Identities=23%  Similarity=0.246  Sum_probs=107.9

Q ss_pred             CeEEEEEEehHhhHHHHHHHHHHHHHHhhcchhhHHH-----------------------------------------HH
Q 045449          641 GMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVK-----------------------------------------II  679 (823)
Q Consensus       641 ~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~-----------------------------------------~~  679 (823)
                      ...||+|.+........+.|..|+.++++++||||++                                         ++
T Consensus        27 ~~~~~~k~~~~~~~~~~~~~~~e~~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~  106 (258)
T cd05078          27 KTEVLLKVLDKSHRNYSESFFEAASMMSQLSHKHLVLNYGVCVCGDESIMVQEYVKFGSLDTYLKKNKNLINISWKLEVA  106 (258)
T ss_pred             cchhhHHhhcchhHHHHHHHHHHHHHHHhCCCCChhheeeEEEeCCCcEEEEecCCCCcHHHHHhcCCCCCCHHHHHHHH
Confidence            3568889887666666678999999999999999999                                         24


Q ss_pred             HHHHHHhhhcCCCCEEeccCCCCCEEeCCCCc--------EEEeecccccccCCCCccccccccccCCCcCcccccCCC-
Q 045449          680 SSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMV--------AHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKG-  750 (823)
Q Consensus       680 ~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~--------~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-  750 (823)
                      .|++.+|.|+|+.+|+||||||+||+++.++.        +|++|||++......      ....+++.|+|||++.+. 
T Consensus       107 ~qi~~~l~~lH~~~iiH~dlkp~nili~~~~~~~~~~~~~~~l~d~g~~~~~~~~------~~~~~~~~y~aPE~~~~~~  180 (258)
T cd05078         107 KQLAWALHFLEDKGLTHGNVCAKNVLLIREEDRKTGNPPFIKLSDPGISITVLPK------EILLERIPWVPPECIENPQ  180 (258)
T ss_pred             HHHHHHHHHHHHCCeecCCCccceEEEecccccccCCCceEEecccccccccCCc------hhccccCCccCchhccCCC
Confidence            68888999999999999999999999987654        699999988754322      224578899999998764 


Q ss_pred             ccccccceehhhhhhccccCCC-CCcCC
Q 045449          751 RVSTRGDVCSFGIISGGKETRS-MTVGE  777 (823)
Q Consensus       751 ~~~~~~Dv~S~Gvv~~~~~~~~-~~~~~  777 (823)
                      .++.++|||||||++|++.+|. .|+..
T Consensus       181 ~~~~~~DiwslG~~l~~l~~g~~~~~~~  208 (258)
T cd05078         181 NLSLAADKWSFGTTLWEIFSGGDKPLSA  208 (258)
T ss_pred             CCCchhhHHHHHHHHHHHHcCCCCChhh
Confidence            5799999999999999999985 45443

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity

>cd05579 STKc_MAST_like Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

Probab=99.77  E-value=3.6e-19  Score=187.09  Aligned_cols=138  Identities=26%  Similarity=0.269  Sum_probs=115.5

Q ss_pred             CeEEEEEEehHhhH---HHHHHHHHHHHHHhhcchhhHHH----------------------------------------
Q 045449          641 GMEVAVKVFHQQYE---RALKSFEDECEVRKRIRHRNLVK----------------------------------------  677 (823)
Q Consensus       641 ~~~vavK~~~~~~~---~~~~~~~~E~~~l~~l~h~niv~----------------------------------------  677 (823)
                      +..||+|++.....   ...+.+.+|++++.+++|+||++                                        
T Consensus        18 ~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~   97 (265)
T cd05579          18 GDIYAIKVIKKADMIRKNQVDQVLTERDILSQAQSPYVVKLYYSFQGKKNLYLVMEYLPGGDLASLLENVGSLDEDVARI   97 (265)
T ss_pred             CCEEEEEEecchhhhhhhHHHHHHHHHHHHHhCCCcchhHHHHheecCcEEEEEEecCCCCcHHHHHHHcCCCCHHHHHH
Confidence            67899999865432   45678999999999999999998                                        


Q ss_pred             HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCc------cccccccccCCCcCcccccCCCc
Q 045449          678 IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQ------LSKQTQTLATIGYMAPEYGTKGR  751 (823)
Q Consensus       678 ~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~------~~~~~~~~gt~~y~aPE~~~~~~  751 (823)
                      ++.|++++|.++|+.+++||||+|+||+++.++.+||+|||++........      ........++..|+|||+.....
T Consensus        98 i~~qi~~~L~~lH~~~i~H~di~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~  177 (265)
T cd05579          98 YIAEIVLALEYLHSNGIIHRDLKPDNILIDSNGHLKLTDFGLSKVGLVRRQINLNDDEKEDKRIVGTPDYIAPEVILGQG  177 (265)
T ss_pred             HHHHHHHHHHHHHHcCeecCCCCHHHeEEcCCCCEEEEecccchhcccCcccccccccccccCcccCccccCHHHhcCCC
Confidence            256888899999999999999999999999999999999999886543211      01223356888999999998888


Q ss_pred             cccccceehhhhhhccccCCCCCcCCC
Q 045449          752 VSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       752 ~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      ++.++||||||++++++.+|..||...
T Consensus       178 ~~~~~Dv~slG~~~~~l~~g~~p~~~~  204 (265)
T cd05579         178 HSKTVDWWSLGCILYEFLVGIPPFHGE  204 (265)
T ss_pred             CCcchhhHHHHHHHHHHHhCCCCCCCC
Confidence            999999999999999999999998654

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert re

>cd05122 PKc_STE Catalytic domain of STE family Protein Kinases

Probab=99.77  E-value=2.7e-19  Score=186.34  Aligned_cols=135  Identities=30%  Similarity=0.396  Sum_probs=116.9

Q ss_pred             CeEEEEEEehHhhHHHHHHHHHHHHHHhhcchhhHHH-----------------------------------------HH
Q 045449          641 GMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVK-----------------------------------------II  679 (823)
Q Consensus       641 ~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~-----------------------------------------~~  679 (823)
                      +..||+|++........+.+.+|++.+++++|+++++                                         ++
T Consensus        25 ~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~l~~e~~~~~~L~~~~~~~~~~~~~~~~~~i~  104 (253)
T cd05122          25 GKEVAIKVIKLESKEKKEKIINEIQILKKCKHPNIVKYYGSYLKKDELWIVMEFCSGGSLKDLLKSTNQTLTESQIAYVC  104 (253)
T ss_pred             CcEEEEEEecccchhHHHHHHHHHHHHHhCCCCCEeEEEEEEecCCeEEEEEecCCCCcHHHHHhhcCCCCCHHHHHHHH
Confidence            5779999997765556678999999999999999987                                         35


Q ss_pred             HHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccCCCcccccccee
Q 045449          680 SSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVC  759 (823)
Q Consensus       680 ~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~  759 (823)
                      .|++++|.++|..+++|||++|+||+++.++.++|+|||.+........   .....|+..|+|||++.+..++.++|||
T Consensus       105 ~~i~~~l~~lh~~~i~h~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~---~~~~~~~~~~~~PE~~~~~~~~~~~Dv~  181 (253)
T cd05122         105 KELLKGLEYLHSNGIIHRDIKAANILLTSDGEVKLIDFGLSAQLSDTKA---RNTMVGTPYWMAPEVINGKPYDYKADIW  181 (253)
T ss_pred             HHHHHHHHHhhcCCEecCCCCHHHEEEccCCeEEEeecccccccccccc---ccceecCCcccCHHHHcCCCCCccccHH
Confidence            6788899999999999999999999999999999999999987654321   2345688999999999888899999999


Q ss_pred             hhhhhhccccCCCCCcCCC
Q 045449          760 SFGIISGGKETRSMTVGET  778 (823)
Q Consensus       760 S~Gvv~~~~~~~~~~~~~~  778 (823)
                      |||++++++++|..|+...
T Consensus       182 slG~il~~l~~g~~p~~~~  200 (253)
T cd05122         182 SLGITAIELAEGKPPYSEL  200 (253)
T ss_pred             HHHHHHHHHHhCCCCCCCC
Confidence            9999999999999998654

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core

>cd06618 PKc_MKK7 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7

Probab=99.77  E-value=4.2e-19  Score=190.28  Aligned_cols=146  Identities=28%  Similarity=0.353  Sum_probs=114.4

Q ss_pred             cCCccceeeccC------------CeEEEEEEehHhh-HHHHHHHHHHHHHHhhcc-hhhHHH-----------------
Q 045449          629 RFSENNLIGIGN------------GMEVAVKVFHQQY-ERALKSFEDECEVRKRIR-HRNLVK-----------------  677 (823)
Q Consensus       629 ~f~~~~~lg~g~------------~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~-h~niv~-----------------  677 (823)
                      +|...+.+|.|+            +..||||++.... .....++.+|++++.+.. |+||++                 
T Consensus        16 ~~~~~~~lg~g~~~~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~~v~e~   95 (296)
T cd06618          16 DLENLGEIGSGTCGQVYKMRFKKTGHVMAVKQMRRTGNKEENKRILMDLDVVLKSHDCPYIVKCYGYFITDSDVFICMEL   95 (296)
T ss_pred             hheeeeEeeccCCeEEEEEEECCCCeEEEEEEEeccCChHHHHHHHHHHHHHHhccCCCchHhhheeeecCCeEEEEeec
Confidence            344555666653            6789999987532 233456777887777775 999998                 


Q ss_pred             -----------------------HHHHHHHHhhhcCC-CCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCcccccc
Q 045449          678 -----------------------IISSSLEYLHFGHS-IPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQT  733 (823)
Q Consensus       678 -----------------------~~~~~l~~L~~~h~-~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~  733 (823)
                                             ++.|++.+++|+|+ .+|+||||+|+||++++++.+||+|||++..+.....   ..
T Consensus        96 ~~~~l~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~~~~i~H~dl~p~nill~~~~~~kL~dfg~~~~~~~~~~---~~  172 (296)
T cd06618          96 MSTCLDKLLKRIQGPIPEDILGKMTVAIVKALHYLKEKHGVIHRDVKPSNILLDASGNVKLCDFGISGRLVDSKA---KT  172 (296)
T ss_pred             cCcCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhCCEecCCCcHHHEEEcCCCCEEECccccchhccCCCc---cc
Confidence                                   24577888999996 6999999999999999999999999999986543222   12


Q ss_pred             ccccCCCcCcccccCCCc----cccccceehhhhhhccccCCCCCcCC
Q 045449          734 QTLATIGYMAPEYGTKGR----VSTRGDVCSFGIISGGKETRSMTVGE  777 (823)
Q Consensus       734 ~~~gt~~y~aPE~~~~~~----~~~~~Dv~S~Gvv~~~~~~~~~~~~~  777 (823)
                      ...++..|+|||++.+..    ++.++|||||||+++++.+|..||..
T Consensus       173 ~~~~~~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~  220 (296)
T cd06618         173 RSAGCAAYMAPERIDPPDPNPKYDIRADVWSLGISLVELATGQFPYKN  220 (296)
T ss_pred             CCCCCccccCHhhcCCCCCccccccchhHHHHHHHHHHHHhCCCCCCc
Confidence            345788999999987553    78999999999999999999999865

Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates it

>cd07834 STKc_MAPK Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase

Probab=99.77  E-value=4.5e-19  Score=193.23  Aligned_cols=138  Identities=29%  Similarity=0.378  Sum_probs=115.2

Q ss_pred             CeEEEEEEehHhh--HHHHHHHHHHHHHHhhcchhhHHH-----------------------------------------
Q 045449          641 GMEVAVKVFHQQY--ERALKSFEDECEVRKRIRHRNLVK-----------------------------------------  677 (823)
Q Consensus       641 ~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~-----------------------------------------  677 (823)
                      +..||||++....  ....+.+.+|++++++++|+||++                                         
T Consensus        25 ~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~lv~e~~~~~l~~~l~~~~~l~~~~  104 (330)
T cd07834          25 GRKVAIKKISNVFDDLIDAKRILREIKLLRHLRHENIIGLLDILRPPSPEDFNDVYIVTELMETDLHKVIKSPQPLTDDH  104 (330)
T ss_pred             CcEEEEEeeccccccchhhhhHHHHHHHHHhcCCcchhhhhhhhcccCcccccceEEEecchhhhHHHHHhCCCCCCHHH
Confidence            5779999987543  344568999999999999999987                                         


Q ss_pred             ---HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCc-cccccccccCCCcCcccccCCC-cc
Q 045449          678 ---IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQ-LSKQTQTLATIGYMAPEYGTKG-RV  752 (823)
Q Consensus       678 ---~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~-~~~~~~~~gt~~y~aPE~~~~~-~~  752 (823)
                         ++.+++++|.++|+.||+||||||+||+++.++.++|+|||++........ ........++..|+|||++.+. .+
T Consensus       105 ~~~i~~~l~~~l~~LH~~gi~H~dlkp~nili~~~~~~~L~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~  184 (330)
T cd07834         105 IQYFLYQILRGLKYLHSANVIHRDLKPSNILVNSNCDLKICDFGLARGVDPDEDEKGFLTEYVVTRWYRAPELLLSSSRY  184 (330)
T ss_pred             HHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCCEEEcccCceEeecccccccccccccccccCcCCceeeecccCC
Confidence               245788899999999999999999999999999999999999987654321 0112345688999999998887 78


Q ss_pred             ccccceehhhhhhccccCCCCCcCCC
Q 045449          753 STRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       753 ~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      +.++||||+||+++++.+|..||.+.
T Consensus       185 ~~~sDi~slG~il~~l~~g~~pf~~~  210 (330)
T cd07834         185 TKAIDIWSVGCIFAELLTRKPLFPGR  210 (330)
T ss_pred             CcchhHHHHHHHHHHHHcCCCCcCCC
Confidence            99999999999999999999998654

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and

>cd06627 STKc_Cdc7_like Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

Probab=99.77  E-value=2.7e-19  Score=186.81  Aligned_cols=136  Identities=30%  Similarity=0.355  Sum_probs=116.0

Q ss_pred             CeEEEEEEehHhhH--HHHHHHHHHHHHHhhcchhhHHH----------------------------------------H
Q 045449          641 GMEVAVKVFHQQYE--RALKSFEDECEVRKRIRHRNLVK----------------------------------------I  678 (823)
Q Consensus       641 ~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~niv~----------------------------------------~  678 (823)
                      +..||+|.+.....  ...+.+.+|++++++++|+|+++                                        +
T Consensus        25 ~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~~~~~L~~~~~~~~~l~~~~~~~~  104 (254)
T cd06627          25 GDFVAIKQISLEKIKEEALKSIMQEIDLLKNLKHPNIVKYIGSIETSDSLYIILEYAENGSLRQIIKKFGPFPESLVAVY  104 (254)
T ss_pred             CcEEEEEEecccccCHHHHHHHHHHHHHHHhCCCCCccEEEEEEEeCCEEEEEEecCCCCcHHHHHHhccCCCHHHHHHH
Confidence            56799999875543  45678999999999999999998                                        3


Q ss_pred             HHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccCCCccccccce
Q 045449          679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDV  758 (823)
Q Consensus       679 ~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv  758 (823)
                      +.|++++|.++|+.|++||||||+||+++.++.++|+|||.++........  .....++..|+|||...+..++.++||
T Consensus       105 ~~~i~~~l~~lH~~~i~H~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~~--~~~~~~~~~y~~pe~~~~~~~~~~~Dv  182 (254)
T cd06627         105 VYQVLQGLAYLHEQGVIHRDIKAANILTTKDGVVKLADFGVATKLNDVSKD--DASVVGTPYWMAPEVIEMSGASTASDI  182 (254)
T ss_pred             HHHHHHHHHHHhhCCcccCCCCHHHEEECCCCCEEEeccccceecCCCccc--ccccccchhhcCHhhhcCCCCCcchhH
Confidence            568889999999999999999999999999999999999999876543321  233568899999999888888999999


Q ss_pred             ehhhhhhccccCCCCCcCCC
Q 045449          759 CSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       759 ~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      ||+|++++++.+|..|+...
T Consensus       183 ~~lG~~l~~l~~g~~p~~~~  202 (254)
T cd06627         183 WSLGCTVIELLTGNPPYYDL  202 (254)
T ss_pred             HHHHHHHHHHHhCCCCCCCc
Confidence            99999999999999998654

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast

>cd06641 STKc_MST3 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3

Probab=99.77  E-value=3.4e-19  Score=189.06  Aligned_cols=136  Identities=27%  Similarity=0.345  Sum_probs=114.2

Q ss_pred             CeEEEEEEehHhh-HHHHHHHHHHHHHHhhcchhhHHH---------------------------------------HHH
Q 045449          641 GMEVAVKVFHQQY-ERALKSFEDECEVRKRIRHRNLVK---------------------------------------IIS  680 (823)
Q Consensus       641 ~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~---------------------------------------~~~  680 (823)
                      +..||||++.... ....+.|.+|+.++++++||||++                                       ++.
T Consensus        29 ~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~l~~~i~~~~~~~~~~~~~~~  108 (277)
T cd06641          29 QKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKDTKLWIIMEYLGGGSALDLLEPGPLDETQIATILR  108 (277)
T ss_pred             CcEEEEEEeccccchHHHHHHHHHHHHHHhcCCCCEeEEEEEEEeCCeEEEEEEeCCCCcHHHHHhcCCCCHHHHHHHHH
Confidence            5679999886432 344568999999999999999997                                       356


Q ss_pred             HHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccCCCccccccceeh
Q 045449          681 SSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCS  760 (823)
Q Consensus       681 ~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S  760 (823)
                      +++.++.++|+.+++|+||||+||+++.++.++++|||+++.......  ......|+..|+|||+..+..++.++||||
T Consensus       109 ~l~~~l~~lh~~~i~h~dl~p~Ni~i~~~~~~~l~dfg~~~~~~~~~~--~~~~~~~~~~y~~PE~~~~~~~~~~~Dv~s  186 (277)
T cd06641         109 EILKGLDYLHSEKKIHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQI--KRNTFVGTPFWMAPEVIKQSAYDSKADIWS  186 (277)
T ss_pred             HHHHHHHHHccCCeecCCCCHHhEEECCCCCEEEeecccceecccchh--hhccccCCccccChhhhccCCCCchhhHHH
Confidence            788899999999999999999999999999999999999876543221  122346889999999998888899999999


Q ss_pred             hhhhhccccCCCCCcCCC
Q 045449          761 FGIISGGKETRSMTVGET  778 (823)
Q Consensus       761 ~Gvv~~~~~~~~~~~~~~  778 (823)
                      |||+++++.+|..|+...
T Consensus       187 lG~~l~~l~~g~~p~~~~  204 (277)
T cd06641         187 LGITAIELAKGEPPHSEL  204 (277)
T ss_pred             HHHHHHHHHcCCCCCCcc
Confidence            999999999999998654

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and int

>cd06614 STKc_PAK Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

Probab=99.77  E-value=2.3e-19  Score=191.24  Aligned_cols=135  Identities=28%  Similarity=0.382  Sum_probs=114.1

Q ss_pred             CeEEEEEEehHhhHHHHHHHHHHHHHHhhcchhhHHH-----------------------------------------HH
Q 045449          641 GMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVK-----------------------------------------II  679 (823)
Q Consensus       641 ~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~-----------------------------------------~~  679 (823)
                      +..||+|++..... ..+.+.+|++++++++|+|+++                                         ++
T Consensus        44 ~~~~~iK~~~~~~~-~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~l~~~~~~~i~  122 (286)
T cd06614          44 GKEVAIKKMRLRKQ-NKELIINEILIMKDCKHPNIVDYYDSYLVGDELWVVMEYMDGGSLTDIITQNFVRMNEPQIAYVC  122 (286)
T ss_pred             CcEEEEEEEecCch-hHHHHHHHHHHHHHCCCCCeeEEEEEEEECCEEEEEEeccCCCcHHHHHHHhccCCCHHHHHHHH
Confidence            56799999976544 4578899999999999999987                                         35


Q ss_pred             HHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccCCCcccccccee
Q 045449          680 SSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVC  759 (823)
Q Consensus       680 ~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~  759 (823)
                      .+++.+|.++|+.|++|+|+||+||+++.++.++|+|||++........  ......++..|+|||++.+..++.++|||
T Consensus       123 ~~i~~~L~~lH~~gi~H~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~--~~~~~~~~~~y~~PE~~~~~~~~~~~Dv~  200 (286)
T cd06614         123 REVLQGLEYLHSQNVIHRDIKSDNILLSKDGSVKLADFGFAAQLTKEKS--KRNSVVGTPYWMAPEVIKRKDYGPKVDIW  200 (286)
T ss_pred             HHHHHHHHHHHhCCeeeCCCChhhEEEcCCCCEEECccchhhhhccchh--hhccccCCcccCCHhHhcCCCCCCccccH
Confidence            6788889999999999999999999999999999999999876543221  12234578899999999888899999999


Q ss_pred             hhhhhhccccCCCCCcCCC
Q 045449          760 SFGIISGGKETRSMTVGET  778 (823)
Q Consensus       760 S~Gvv~~~~~~~~~~~~~~  778 (823)
                      ||||+++++.+|..|+...
T Consensus       201 slGvil~~l~~g~~p~~~~  219 (286)
T cd06614         201 SLGIMCIEMAEGEPPYLRE  219 (286)
T ss_pred             HHHHHHHHHHhCCCCCCCC
Confidence            9999999999999998654

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two grou

>cd05577 STKc_GRK Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase

Probab=99.76  E-value=2.7e-19  Score=189.88  Aligned_cols=136  Identities=26%  Similarity=0.262  Sum_probs=114.2

Q ss_pred             CCeEEEEEEehHhh---HHHHHHHHHHHHHHhhcchhhHHH---------------------------------------
Q 045449          640 NGMEVAVKVFHQQY---ERALKSFEDECEVRKRIRHRNLVK---------------------------------------  677 (823)
Q Consensus       640 ~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~---------------------------------------  677 (823)
                      .|..||+|.+....   ....+.+..|++++++++||||++                                       
T Consensus        17 ~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~   96 (277)
T cd05577          17 TGKMYACKKLDKKRLKKRKGEQMALNEKKILEKVSSRFIVSLAYAFETKDDLCLVMTLMNGGDLKYHIYNVGEPGFPEAR   96 (277)
T ss_pred             CCcEEEEEEEehhhhhhhhhhHHHHHHHHHHHhCCCCCEeeeeeEEecCCeEEEEEecCCCCcHHHHHHHcCcCCCCHHH
Confidence            46789999986543   223456788999999999999998                                       


Q ss_pred             ---HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccCCCcccc
Q 045449          678 ---IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVST  754 (823)
Q Consensus       678 ---~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~  754 (823)
                         ++.|++.+|.|+|+.+++||||||+||+++.++.+||+|||.++......   ......++..|+|||+..+..++.
T Consensus        97 ~~~~~~ql~~~l~~lH~~~i~H~di~p~Nil~~~~~~~~l~dfg~~~~~~~~~---~~~~~~~~~~y~~PE~~~~~~~~~  173 (277)
T cd05577          97 AIFYAAQIICGLEHLHQRRIVYRDLKPENVLLDDHGNVRISDLGLAVELKGGK---KIKGRAGTPGYMAPEVLQGEVYDF  173 (277)
T ss_pred             HHHHHHHHHHHHHHHHhCCcccCCCCHHHEEECCCCCEEEccCcchhhhccCC---ccccccCCCCcCCHHHhcCCCCCc
Confidence               24688889999999999999999999999999999999999998654321   123346788999999998888999


Q ss_pred             ccceehhhhhhccccCCCCCcCCC
Q 045449          755 RGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       755 ~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      ++||||+||+++++.+|..||...
T Consensus       174 ~~Di~slG~il~~l~~g~~p~~~~  197 (277)
T cd05577         174 SVDWFALGCTLYEMIAGRSPFRQR  197 (277)
T ss_pred             hhhhHHHHHHHHHHhhCCCCCCCC
Confidence            999999999999999999998654

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of

>cd06633 STKc_TAO3 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3

Probab=99.76  E-value=4.2e-19  Score=191.85  Aligned_cols=132  Identities=28%  Similarity=0.332  Sum_probs=110.0

Q ss_pred             CeEEEEEEehHh---hHHHHHHHHHHHHHHhhcchhhHHH----------------------------------------
Q 045449          641 GMEVAVKVFHQQ---YERALKSFEDECEVRKRIRHRNLVK----------------------------------------  677 (823)
Q Consensus       641 ~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~----------------------------------------  677 (823)
                      +..||+|++...   .....+.+.+|++++++++|||+++                                        
T Consensus        46 ~~~v~ik~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~l~~~l~~~~~~l~~~~~~~  125 (313)
T cd06633          46 NEVVAVKKMSYSGKQTNEKWQDIIKEVKFLQQLKHPNTIEYKGCYLKEHTAWLVMEYCLGSASDLLEVHKKPLQEVEIAA  125 (313)
T ss_pred             CcEEEEEEEeccccCchHHHHHHHHHHHHHHhCCCCCCccEEEEEEeCCEEEEEEecCCCCHHHHHHhcCCCCCHHHHHH
Confidence            577999988632   2344467889999999999999998                                        


Q ss_pred             HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccC---CCcccc
Q 045449          678 IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGT---KGRVST  754 (823)
Q Consensus       678 ~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~---~~~~~~  754 (823)
                      ++.|++.++.|+|+.+++||||||+||+++.++.+||+|||++.....      .....|+..|+|||++.   .+.++.
T Consensus       126 ~~~qi~~al~~LH~~gi~H~dl~p~nili~~~~~~kL~dfg~~~~~~~------~~~~~~~~~y~aPE~~~~~~~~~~~~  199 (313)
T cd06633         126 ITHGALQGLAYLHSHNMIHRDIKAGNILLTEPGQVKLADFGSASKSSP------ANSFVGTPYWMAPEVILAMDEGQYDG  199 (313)
T ss_pred             HHHHHHHHHHHHHHCCeecCCCChhhEEECCCCCEEEeecCCCcccCC------CCCccccccccChhhccccCCCCCCc
Confidence            356788899999999999999999999999999999999999865322      12356889999999874   456889


Q ss_pred             ccceehhhhhhccccCCCCCcCCC
Q 045449          755 RGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       755 ~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      ++|||||||+++++.+|..|+...
T Consensus       200 ~sDv~slGvil~el~~g~~p~~~~  223 (313)
T cd06633         200 KVDVWSLGITCIELAERKPPLFNM  223 (313)
T ss_pred             hhhHHHHHHHHHHHHhCCCCCCCC
Confidence            999999999999999999988653

Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a co

>cd06620 PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases

Probab=99.76  E-value=2.4e-19  Score=190.98  Aligned_cols=134  Identities=26%  Similarity=0.323  Sum_probs=111.6

Q ss_pred             CeEEEEEEehHhh-HHHHHHHHHHHHHHhhcchhhHHH----------------------------------------HH
Q 045449          641 GMEVAVKVFHQQY-ERALKSFEDECEVRKRIRHRNLVK----------------------------------------II  679 (823)
Q Consensus       641 ~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~----------------------------------------~~  679 (823)
                      +..||+|++.... ....+.|.+|++++++++||||++                                        ++
T Consensus        30 ~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~  109 (284)
T cd06620          30 GTVMAKKVVHIGAKSSVRKQILRELQIMHECRSPYIVSFYGAFLNENNICMCMEFMDCGSLDRIYKKGGPIPVEILGKIA  109 (284)
T ss_pred             CcEEEEEEEEecCcchHHHHHHHHHHHHHHcCCCCcceEeeeEecCCEEEEEEecCCCCCHHHHHHhccCCCHHHHHHHH
Confidence            5679999876443 345578999999999999999998                                        24


Q ss_pred             HHHHHHhhhcCC-CCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccCCCccccccce
Q 045449          680 SSSLEYLHFGHS-IPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDV  758 (823)
Q Consensus       680 ~~~l~~L~~~h~-~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv  758 (823)
                      .+++.+|.|+|+ .+++||||||+||++++++.++|+|||+++......    .....|+..|+|||++.++.++.++||
T Consensus       110 ~~i~~~l~~LH~~~~i~H~dl~p~nil~~~~~~~~l~d~gl~~~~~~~~----~~~~~~~~~~~aPE~~~~~~~~~~~Di  185 (284)
T cd06620         110 VAVVEGLTYLYNVHRIMHRDIKPSNILVNSRGQIKLCDFGVSGELINSI----ADTFVGTSTYMSPERIQGGKYTVKSDV  185 (284)
T ss_pred             HHHHHHHHHHHHhcCeeccCCCHHHEEECCCCcEEEccCCcccchhhhc----cCccccCcccCCHHHHccCCCCccchH
Confidence            566777888885 689999999999999999999999999987543221    123568999999999988889999999


Q ss_pred             ehhhhhhccccCCCCCcCCC
Q 045449          759 CSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       759 ~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      |||||+++++.+|..||...
T Consensus       186 ~slG~~l~~l~tg~~p~~~~  205 (284)
T cd06620         186 WSLGISIIELALGKFPFAFS  205 (284)
T ss_pred             HHHHHHHHHHHhCCCCCccc
Confidence            99999999999999998754

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd07841 STKc_CDK7 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

Probab=99.76  E-value=4.6e-19  Score=190.19  Aligned_cols=135  Identities=27%  Similarity=0.317  Sum_probs=110.3

Q ss_pred             CeEEEEEEehHhh-----HHHHHHHHHHHHHHhhcchhhHHH--------------------------------------
Q 045449          641 GMEVAVKVFHQQY-----ERALKSFEDECEVRKRIRHRNLVK--------------------------------------  677 (823)
Q Consensus       641 ~~~vavK~~~~~~-----~~~~~~~~~E~~~l~~l~h~niv~--------------------------------------  677 (823)
                      +..||||.+....     ......+..|++++++++|+||++                                      
T Consensus        25 ~~~v~iK~~~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv~e~~~~~L~~~i~~~~~~~~~~~~  104 (298)
T cd07841          25 GRIVAIKKIKLGERKEAKDGINFTALREIKLLQELKHPNIIGLLDVFGHKSNINLVFEFMETDLEKVIKDKSIVLTPADI  104 (298)
T ss_pred             CcEEEEEEEeccccccccchhhHHHHHHHHHHhhcCCCCChhhhheeecCCEEEEEEcccCCCHHHHHhccCCCCCHHHH
Confidence            5789999987543     223456788999999999999997                                      


Q ss_pred             --HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccCC-Ccccc
Q 045449          678 --IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTK-GRVST  754 (823)
Q Consensus       678 --~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~  754 (823)
                        ++.|++++|.|+|+.+++||||||+||+++.++.+||+|||+++.......  ......+++.|+|||.+.+ ..++.
T Consensus       105 ~~~~~qi~~al~~lH~~~i~H~dl~p~nill~~~~~~~l~dfg~~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~  182 (298)
T cd07841         105 KSYMLMTLRGLEYLHSNWILHRDLKPNNLLIASDGVLKLADFGLARSFGSPNR--KMTHQVVTRWYRAPELLFGARHYGV  182 (298)
T ss_pred             HHHHHHHHHHHHHHHhCCeeecCCChhhEEEcCCCCEEEccceeeeeccCCCc--cccccccceeeeCHHHHhCCCCCCc
Confidence              356889999999999999999999999999999999999999987644321  1223457889999998754 45789


Q ss_pred             ccceehhhhhhccccCCCCCcCC
Q 045449          755 RGDVCSFGIISGGKETRSMTVGE  777 (823)
Q Consensus       755 ~~Dv~S~Gvv~~~~~~~~~~~~~  777 (823)
                      ++|||||||+++++++|..+|..
T Consensus       183 ~~Dv~slG~il~e~~~g~~~~~~  205 (298)
T cd07841         183 GVDMWSVGCIFAELLLRVPFLPG  205 (298)
T ss_pred             HHHHHHHHHHHHHHHcCCccccC
Confidence            99999999999999999766643

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is

>KOG1151 consensus Tousled-like protein kinase [Signal transduction mechanisms]

Probab=99.76  E-value=1.3e-18  Score=179.36  Aligned_cols=139  Identities=31%  Similarity=0.387  Sum_probs=111.9

Q ss_pred             CeEEEEEEehHh-------hHHHHHHHHHHHHHHhhcchhhHHH------------------------------------
Q 045449          641 GMEVAVKVFHQQ-------YERALKSFEDECEVRKRIRHRNLVK------------------------------------  677 (823)
Q Consensus       641 ~~~vavK~~~~~-------~~~~~~~~~~E~~~l~~l~h~niv~------------------------------------  677 (823)
                      .+.||||+-...       .+...+...+|.+|-+.+.||.||+                                    
T Consensus       488 qRYvAvKIHqlNK~WrdEKKeNYhKHAcREyrIHKeLDHpRIVKlYDyfslDtdsFCTVLEYceGNDLDFYLKQhklmSE  567 (775)
T KOG1151|consen  488 QRYVAVKIHQLNKNWRDEKKENYHKHACREYRIHKELDHPRIVKLYDYFSLDTDSFCTVLEYCEGNDLDFYLKQHKLMSE  567 (775)
T ss_pred             hheeeEeeehhccchhhHhhhhHHHHHHHHHhhhhccCcceeeeeeeeeeeccccceeeeeecCCCchhHHHHhhhhhhH
Confidence            467999986422       1345677899999999999999999                                    


Q ss_pred             -----HHHHHHHHhhhcC--CCCEEeccCCCCCEEeC---CCCcEEEeecccccccCCCCcc-----ccccccccCCCcC
Q 045449          678 -----IISSSLEYLHFGH--SIPIIHCDLKPSNVLLD---EDMVAHISDFGIAKLLSGEDQL-----SKQTQTLATIGYM  742 (823)
Q Consensus       678 -----~~~~~l~~L~~~h--~~~ivHrdlk~~NiLl~---~~~~~kl~DfGla~~~~~~~~~-----~~~~~~~gt~~y~  742 (823)
                           ++.|++.+|.|+.  +++|+|-|+||.|||+-   ..|.+||+|||+++.+..+...     ......+||.+|.
T Consensus       568 KEARSIiMQiVnAL~YLNEikpPIIHYDLKPgNILLv~GtacGeIKITDFGLSKIMdddSy~~vdGmeLTSQgAGTYWYL  647 (775)
T KOG1151|consen  568 KEARSIIMQIVNALKYLNEIKPPIIHYDLKPGNILLVNGTACGEIKITDFGLSKIMDDDSYNSVDGMELTSQGAGTYWYL  647 (775)
T ss_pred             HHHHHHHHHHHHHHHHHhccCCCeeeeccCCccEEEecCcccceeEeeecchhhhccCCccCcccceeeecccCceeeec
Confidence                 4667888888775  46899999999999994   4589999999999998755432     2234568999999


Q ss_pred             cccccCCC----ccccccceehhhhhhccccCCCCCcCCCc
Q 045449          743 APEYGTKG----RVSTRGDVCSFGIISGGKETRSMTVGETC  779 (823)
Q Consensus       743 aPE~~~~~----~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~~  779 (823)
                      +||.+.-+    ..+.|+||||.|||+|..++|+-||+...
T Consensus       648 PPEcFvVgkePPKIsnKVDVWSvGVIFyQClYGrKPFGhnq  688 (775)
T KOG1151|consen  648 PPECFVVGKEPPKISNKVDVWSVGVIFYQCLYGRKPFGHNQ  688 (775)
T ss_pred             CcceeecCCCCCccccceeeEeeehhhhhhhccCCCCCCch
Confidence            99976544    36899999999999999999999997653

>cd07854 STKc_MAPK4_6 Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6

Probab=99.76  E-value=3.5e-19  Score=195.00  Aligned_cols=150  Identities=27%  Similarity=0.385  Sum_probs=119.0

Q ss_pred             ccCCccceeeccC------------CeEEEEEEehHhhHHHHHHHHHHHHHHhhcchhhHHHH-----------------
Q 045449          628 DRFSENNLIGIGN------------GMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVKI-----------------  678 (823)
Q Consensus       628 ~~f~~~~~lg~g~------------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~-----------------  678 (823)
                      ++|...+.||.|+            +..||+|.+........+.+.+|++++++++||||+++                 
T Consensus         5 ~~y~~~~~Lg~g~~g~vy~~~~~~~~~~v~iK~i~~~~~~~~~~~~~Ei~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~~   84 (342)
T cd07854           5 SRYMDLRPLGCGSNGLVFSAVDSDCDKRVAVKKIVLTDPQSVKHALREIKIIRRLDHDNIVKVYEVLGPSGSDLTEDVGS   84 (342)
T ss_pred             cceEEEEEecCCCCEEEEEEEECCCCcEEEEEEEecCCCchHHHHHHHHHHHHhcCCCcchhhHhhhccccccccccccc
Confidence            5666667777764            56799998866554556778899999999999999862                 


Q ss_pred             -----------------------------------HHHHHHHhhhcCCCCEEeccCCCCCEEeC-CCCcEEEeecccccc
Q 045449          679 -----------------------------------ISSSLEYLHFGHSIPIIHCDLKPSNVLLD-EDMVAHISDFGIAKL  722 (823)
Q Consensus       679 -----------------------------------~~~~l~~L~~~h~~~ivHrdlk~~NiLl~-~~~~~kl~DfGla~~  722 (823)
                                                         +.|++++|.|+|+.+|+||||||+||+++ .++.+|++|||.++.
T Consensus        85 ~~~~~~~~lv~e~~~~~L~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~givH~dikp~Nili~~~~~~~kl~dfg~~~~  164 (342)
T cd07854          85 LTELNSVYIVQEYMETDLANVLEQGPLSEEHARLFMYQLLRGLKYIHSANVLHRDLKPANVFINTEDLVLKIGDFGLARI  164 (342)
T ss_pred             ccccceEEEEeecccccHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEEcCCCceEEECCccccee
Confidence                                               35788999999999999999999999998 456789999999986


Q ss_pred             cCCCCccc-cccccccCCCcCcccccCC-CccccccceehhhhhhccccCCCCCcCC
Q 045449          723 LSGEDQLS-KQTQTLATIGYMAPEYGTK-GRVSTRGDVCSFGIISGGKETRSMTVGE  777 (823)
Q Consensus       723 ~~~~~~~~-~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~  777 (823)
                      ........ ......|+..|+|||++.. ..++.++|||||||+++++.+|+.||..
T Consensus       165 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwSlGvil~el~~g~~pf~~  221 (342)
T cd07854         165 VDPHYSHKGYLSEGLVTKWYRSPRLLLSPNNYTKAIDMWAAGCIFAEMLTGKPLFAG  221 (342)
T ss_pred             cCCccccccccccccccccccCHHHHhCccccCchhhHHHHHHHHHHHHhCCCCCCC
Confidence            54321111 1122457889999997654 4578999999999999999999999864

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progressi

>cd05076 PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=99.76  E-value=4.8e-19  Score=187.58  Aligned_cols=132  Identities=19%  Similarity=0.237  Sum_probs=108.2

Q ss_pred             CeEEEEEEehHhhHHHHHHHHHHHHHHhhcchhhHHH-----------------------------------------HH
Q 045449          641 GMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVK-----------------------------------------II  679 (823)
Q Consensus       641 ~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~-----------------------------------------~~  679 (823)
                      ...||+|++.........+|.+|++++++++||||++                                         ++
T Consensus        44 ~~~v~~k~~~~~~~~~~~~~~~~~~~~~~l~h~niv~~~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~  123 (274)
T cd05076          44 ELRVVLKVLDPSHRDIALAFFETASLMSQVSHIHLAFVHGVCVRGSENIMVEEFVEHGPLDVCLRKEKGRVPVAWKITVA  123 (274)
T ss_pred             eeeEEEEecChHHHHHHHHHHHHHHHHhcCCCCCeeeEEEEEEeCCceEEEEecCCCCcHHHHHHhcCCCCCHHHHHHHH
Confidence            4679999998766656678999999999999999998                                         35


Q ss_pred             HHHHHHhhhcCCCCEEeccCCCCCEEeCCCC-------cEEEeecccccccCCCCccccccccccCCCcCcccccCC-Cc
Q 045449          680 SSSLEYLHFGHSIPIIHCDLKPSNVLLDEDM-------VAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTK-GR  751 (823)
Q Consensus       680 ~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~-------~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~  751 (823)
                      .|++.+|+|+|+.+|+||||||+||+++..+       .+|++|||+++.....      ....++..|+|||++.+ ..
T Consensus       124 ~qi~~~l~~lH~~~iiH~dlkp~Nill~~~~~~~~~~~~~kl~d~g~~~~~~~~------~~~~~~~~~~aPe~~~~~~~  197 (274)
T cd05076         124 QQLASALSYLEDKNLVHGNVCAKNILLARLGLAEGTSPFIKLSDPGVSFTALSR------EERVERIPWIAPECVPGGNS  197 (274)
T ss_pred             HHHHHHHHHHHcCCccCCCCCcccEEEeccCcccCccceeeecCCccccccccc------cccccCCcccCchhhcCCCC
Confidence            6888899999999999999999999997543       4799999988654221      12357888999998865 56


Q ss_pred             cccccceehhhhhhcccc-CCCCCcCCC
Q 045449          752 VSTRGDVCSFGIISGGKE-TRSMTVGET  778 (823)
Q Consensus       752 ~~~~~Dv~S~Gvv~~~~~-~~~~~~~~~  778 (823)
                      ++.++|||||||+++++. +|..|+...
T Consensus       198 ~~~~~Dv~slG~~l~el~~~g~~p~~~~  225 (274)
T cd05076         198 LSTAADKWSFGTTLLEICFDGEVPLKER  225 (274)
T ss_pred             CCcHHHHHHHHHHHHHHHhCCCCCcccc
Confidence            899999999999999984 678887654

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalyt

>cd08530 STKc_CNK2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

Probab=99.76  E-value=7.6e-19  Score=183.78  Aligned_cols=135  Identities=24%  Similarity=0.285  Sum_probs=114.4

Q ss_pred             CeEEEEEEehHhh--HHHHHHHHHHHHHHhhcchhhHHHH----------------------------------------
Q 045449          641 GMEVAVKVFHQQY--ERALKSFEDECEVRKRIRHRNLVKI----------------------------------------  678 (823)
Q Consensus       641 ~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~~----------------------------------------  678 (823)
                      +..+|+|.+....  .....++.+|++++++++|+||+++                                        
T Consensus        25 ~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~  104 (256)
T cd08530          25 NQFYALKEVDLGSMSQKEREDAVNEIRILASVNHPNIISYKEAFLDGNKLCIVMEYAPFGDLSKAISKRKKKRKLIPEQE  104 (256)
T ss_pred             CCEEEEEEEehhhccHHHHHHHHHHHHHHHhCCCCCchhhhhhhccCCEEEEEehhcCCCCHHHHHHHHHhhcCCCCHHH
Confidence            5779999987542  3445678899999999999999982                                        


Q ss_pred             ----HHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccCCCcccc
Q 045449          679 ----ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVST  754 (823)
Q Consensus       679 ----~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~  754 (823)
                          +.+++++|.++|+.+++||||+|+||+++.++.+|++|||+++......    .....+++.|+|||...+..++.
T Consensus       105 ~~~~~~~l~~al~~lh~~~i~h~~l~~~ni~~~~~~~~kl~d~g~~~~~~~~~----~~~~~~~~~~~~Pe~~~~~~~~~  180 (256)
T cd08530         105 IWRIFIQLLRGLQALHEQKILHRDLKSANILLVANDLVKIGDLGISKVLKKNM----AKTQIGTPHYMAPEVWKGRPYSY  180 (256)
T ss_pred             HHHHHHHHHHHHHHHhhCCcccCCCCcceEEEecCCcEEEeeccchhhhccCC----cccccCCccccCHHHHCCCCCCc
Confidence                3477888999999999999999999999999999999999998765431    12345889999999998888999


Q ss_pred             ccceehhhhhhccccCCCCCcCCCc
Q 045449          755 RGDVCSFGIISGGKETRSMTVGETC  779 (823)
Q Consensus       755 ~~Dv~S~Gvv~~~~~~~~~~~~~~~  779 (823)
                      ++|+||+|++++++.+|..||....
T Consensus       181 ~~D~~slG~~~~~l~~g~~p~~~~~  205 (256)
T cd08530         181 KSDIWSLGCLLYEMATFAPPFEARS  205 (256)
T ss_pred             hhhHHHHHHHHHHHHhCCCCCCCCC
Confidence            9999999999999999999986643

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, an

>cd08225 STKc_Nek5 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5

Probab=99.76  E-value=4.8e-19  Score=185.44  Aligned_cols=136  Identities=21%  Similarity=0.278  Sum_probs=112.3

Q ss_pred             CeEEEEEEehHhh--HHHHHHHHHHHHHHhhcchhhHHHH----------------------------------------
Q 045449          641 GMEVAVKVFHQQY--ERALKSFEDECEVRKRIRHRNLVKI----------------------------------------  678 (823)
Q Consensus       641 ~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~~----------------------------------------  678 (823)
                      |..||+|.+....  ....+.+.+|++++++++|+||+++                                        
T Consensus        25 ~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~~~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~  104 (257)
T cd08225          25 SEHCVIKEIDLTKMPVKEKEASKKEVILLAKMKHPNIVTFFASFQENGRLFIVMEYCDGGDLMKRINRQRGVLFSEDQIL  104 (257)
T ss_pred             CceEEEEEeeHhhccchhhHHHHHHHHHHHhCCCCChhhhhheeccCCeEEEEEecCCCCcHHHHHHhccCCCCCHHHHH
Confidence            5678999986542  2334678899999999999999982                                        


Q ss_pred             --HHHHHHHhhhcCCCCEEeccCCCCCEEeCCCC-cEEEeecccccccCCCCccccccccccCCCcCcccccCCCccccc
Q 045449          679 --ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDM-VAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTR  755 (823)
Q Consensus       679 --~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~-~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~  755 (823)
                        +.+++++|.|+|+.+++|+|+||+||++++++ .+|++|||.+........  ......|++.|+|||+.....++.+
T Consensus       105 ~~~~~l~~~l~~lh~~~i~H~dl~~~nil~~~~~~~~~l~d~~~~~~~~~~~~--~~~~~~~~~~~~ape~~~~~~~~~~  182 (257)
T cd08225         105 SWFVQISLGLKHIHDRKILHRDIKSQNIFLSKNGMVAKLGDFGIARQLNDSME--LAYTCVGTPYYLSPEICQNRPYNNK  182 (257)
T ss_pred             HHHHHHHHHHHHHHHCCcccccCCHHHEEEcCCCCeEEecccccchhccCCcc--cccccCCCccccCHHHHcCCCCCch
Confidence              45778889999999999999999999999775 579999999987643322  1223468999999999888889999


Q ss_pred             cceehhhhhhccccCCCCCcCCC
Q 045449          756 GDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       756 ~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      +|||||||+++++.+|..|+...
T Consensus       183 ~Dv~slG~il~~l~~g~~p~~~~  205 (257)
T cd08225         183 TDIWSLGCVLYELCTLKHPFEGN  205 (257)
T ss_pred             hhHHHHHHHHHHHHhCCCCCCCc
Confidence            99999999999999999998653

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown.

>cd07851 STKc_p38 Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase

Probab=99.76  E-value=5.1e-19  Score=193.79  Aligned_cols=147  Identities=31%  Similarity=0.395  Sum_probs=120.1

Q ss_pred             HhccCCccceeeccC------------CeEEEEEEehHhh--HHHHHHHHHHHHHHhhcchhhHHHH-------------
Q 045449          626 ATDRFSENNLIGIGN------------GMEVAVKVFHQQY--ERALKSFEDECEVRKRIRHRNLVKI-------------  678 (823)
Q Consensus       626 at~~f~~~~~lg~g~------------~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~~-------------  678 (823)
                      ..++|.....||.|+            +..||||++....  ....+.+.+|++++++++|+|++++             
T Consensus        13 ~~~~y~~~~~ig~g~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~   92 (343)
T cd07851          13 VPDRYQNLSPVGSGAYGQVCSAFDTKTGRKVAIKKLSRPFQSAIHAKRTYRELRLLKHMDHENVIGLLDVFTPASSLEDF   92 (343)
T ss_pred             ccCceEEEEEeccCCceEEEEEEECCCCcEEEEEecccccchhhHHHHHHHHHHHHHhccCCCHHHHHHHhhcccccccc
Confidence            456677777787764            5679999986432  2334667889999999999999872             


Q ss_pred             -------------------------------HHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCC
Q 045449          679 -------------------------------ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGED  727 (823)
Q Consensus       679 -------------------------------~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~  727 (823)
                                                     +.|++++|+++|+.+|+||||||+||+++.++.+||+|||+++..... 
T Consensus        93 ~~~~lv~e~~~~~L~~~~~~~~l~~~~~~~~~~ql~~aL~~LH~~gi~H~dlkp~Nill~~~~~~kL~dfg~~~~~~~~-  171 (343)
T cd07851          93 QDVYLVTHLMGADLNNIVKCQKLSDDHIQFLVYQILRGLKYIHSAGIIHRDLKPSNIAVNEDCELKILDFGLARHTDDE-  171 (343)
T ss_pred             ccEEEEEecCCCCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeEECCCCCEEEcccccccccccc-
Confidence                                           357888999999999999999999999999999999999999865432 


Q ss_pred             ccccccccccCCCcCcccccCC-CccccccceehhhhhhccccCCCCCcCC
Q 045449          728 QLSKQTQTLATIGYMAPEYGTK-GRVSTRGDVCSFGIISGGKETRSMTVGE  777 (823)
Q Consensus       728 ~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~  777 (823)
                          .....++..|+|||+..+ ..++.++||||+||+++++++|..||..
T Consensus       172 ----~~~~~~~~~y~aPE~~~~~~~~~~~~DvwslGv~l~elltg~~pf~~  218 (343)
T cd07851         172 ----MTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGKTLFPG  218 (343)
T ss_pred             ----ccCCcccccccCHHHHhCCCCCCchHhHHHHHHHHHHHHhCCCCCCC
Confidence                233467889999998765 3678999999999999999999998854

Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK

>cd07843 STKc_CDC2L1 Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1

Probab=99.76  E-value=3.5e-19  Score=190.62  Aligned_cols=136  Identities=29%  Similarity=0.291  Sum_probs=110.9

Q ss_pred             CeEEEEEEehHhh--HHHHHHHHHHHHHHhhcchhhHHH-----------------------------------------
Q 045449          641 GMEVAVKVFHQQY--ERALKSFEDECEVRKRIRHRNLVK-----------------------------------------  677 (823)
Q Consensus       641 ~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~-----------------------------------------  677 (823)
                      ++.||+|.++...  ......+.+|++++++++||||++                                         
T Consensus        30 ~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~~~lv~e~~~~~L~~~~~~~~~~l~~~~~~  109 (293)
T cd07843          30 GEIVALKKLKMEKEKEGFPITSLREINILLKLQHPNIVTVKEVVVGSNLDKIYMVMEYVEHDLKSLMETMKQPFLQSEVK  109 (293)
T ss_pred             CcEEEEEEEeeccccccchhhHHHHHHHHHhcCCCCEEEEEEEEEecCCCcEEEEehhcCcCHHHHHHhccCCCCHHHHH
Confidence            5779999886433  222346788999999999999987                                         


Q ss_pred             -HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccCCCc-cccc
Q 045449          678 -IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGR-VSTR  755 (823)
Q Consensus       678 -~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~-~~~~  755 (823)
                       ++.|++.+|.|+|+.+++||||||+||+++.++.+||+|||+++.......  ......+++.|+|||++.+.. ++.+
T Consensus       110 ~i~~qi~~aL~~LH~~~i~H~dl~p~nili~~~~~~~l~d~g~~~~~~~~~~--~~~~~~~~~~~~aPE~~~~~~~~~~~  187 (293)
T cd07843         110 CLMLQLLSGVAHLHDNWILHRDLKTSNLLLNNRGILKICDFGLAREYGSPLK--PYTQLVVTLWYRAPELLLGAKEYSTA  187 (293)
T ss_pred             HHHHHHHHHHHHHHHCCeeeccCCHHHEEECCCCcEEEeecCceeeccCCcc--ccccccccccccCchhhcCCccccch
Confidence             346788899999999999999999999999999999999999987654321  123345789999999886544 6899


Q ss_pred             cceehhhhhhccccCCCCCcCCC
Q 045449          756 GDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       756 ~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      +|+||+||+++++.+|..||...
T Consensus       188 ~Di~slG~~l~~l~~g~~~f~~~  210 (293)
T cd07843         188 IDMWSVGCIFAELLTKKPLFPGK  210 (293)
T ss_pred             hhHHHHHHHHHHHHhCCCCCCCC
Confidence            99999999999999999888643

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the

>cd05112 PTKc_Itk Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

Probab=99.76  E-value=4.5e-19  Score=185.68  Aligned_cols=136  Identities=24%  Similarity=0.363  Sum_probs=110.3

Q ss_pred             CeEEEEEEehHhhHHHHHHHHHHHHHHhhcchhhHHH-----------------------------------------HH
Q 045449          641 GMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVK-----------------------------------------II  679 (823)
Q Consensus       641 ~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~-----------------------------------------~~  679 (823)
                      +..+|+|++..... ...+|.+|+++++++.|||+++                                         ++
T Consensus        28 ~~~~~~k~~~~~~~-~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~  106 (256)
T cd05112          28 KRKVAIKTIREGAM-SEEDFIEEAQVMMKLSHPKLVQLYGVCTERSPICLVFEFMEHGCLSDYLRAQRGKFSQETLLGMC  106 (256)
T ss_pred             CCeEEEEECCCCCC-CHHHHHHHHHHHHhCCCCCeeeEEEEEccCCceEEEEEcCCCCcHHHHHHhCccCCCHHHHHHHH
Confidence            45689998864422 2357899999999999999998                                         24


Q ss_pred             HHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccCCCcccccccee
Q 045449          680 SSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVC  759 (823)
Q Consensus       680 ~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~  759 (823)
                      .+++.++.++|+.+++||||||+||+++.++.+||+|||+++....... .......++.+|+|||+..++.++.++|||
T Consensus       107 ~~l~~~l~~lH~~~i~h~dl~p~ni~i~~~~~~~l~d~g~~~~~~~~~~-~~~~~~~~~~~~~aPe~~~~~~~~~~~Dv~  185 (256)
T cd05112         107 LDVCEGMAYLESSNVIHRDLAARNCLVGENQVVKVSDFGMTRFVLDDQY-TSSTGTKFPVKWSSPEVFSFSKYSSKSDVW  185 (256)
T ss_pred             HHHHHHHHHHHHCCccccccccceEEEcCCCeEEECCCcceeecccCcc-cccCCCccchhhcCHhHhccCCcChHHHHH
Confidence            5778889999999999999999999999999999999999886533211 112223456789999999888899999999


Q ss_pred             hhhhhhccccC-CCCCcCCC
Q 045449          760 SFGIISGGKET-RSMTVGET  778 (823)
Q Consensus       760 S~Gvv~~~~~~-~~~~~~~~  778 (823)
                      |+||++|++.+ |..||...
T Consensus       186 slG~~l~el~~~g~~p~~~~  205 (256)
T cd05112         186 SFGVLMWEVFSEGKTPYENR  205 (256)
T ss_pred             HHHHHHHHHHcCCCCCCCcC
Confidence            99999999998 88888654

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activ

>cd08215 STKc_Nek Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

Probab=99.75  E-value=7.9e-19  Score=183.61  Aligned_cols=136  Identities=24%  Similarity=0.345  Sum_probs=115.2

Q ss_pred             CeEEEEEEehHhh--HHHHHHHHHHHHHHhhcchhhHHH-----------------------------------------
Q 045449          641 GMEVAVKVFHQQY--ERALKSFEDECEVRKRIRHRNLVK-----------------------------------------  677 (823)
Q Consensus       641 ~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~-----------------------------------------  677 (823)
                      +..||+|++....  ....+.+.+|++++++++|+|+++                                         
T Consensus        25 ~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~  104 (258)
T cd08215          25 GKLYVLKEIDLSNMSEKEREDALNEVKILKKLNHPNIIKYYESFEEKGKLCIVMEYADGGDLSQKIKKQKKEGKPFPEEQ  104 (258)
T ss_pred             CcEEEEEEeecccCChHHHHHHHHHHHHHHhcCCCChhheEEEEecCCEEEEEEEecCCCcHHHHHHHhhccCCCcCHHH
Confidence            5779999987543  355678899999999999999998                                         


Q ss_pred             ---HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccCCCcccc
Q 045449          678 ---IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVST  754 (823)
Q Consensus       678 ---~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~  754 (823)
                         ++.+++.+|+++|+.+++|+|++|+||+++.++.++|+|||++........  ......|++.|+|||...+..++.
T Consensus       105 ~~~i~~~i~~~l~~lh~~~~~H~dl~~~nil~~~~~~~~l~d~~~~~~~~~~~~--~~~~~~~~~~y~~pe~~~~~~~~~  182 (258)
T cd08215         105 ILDWFVQLCLALKYLHSRKILHRDIKPQNIFLTSNGLVKLGDFGISKVLSSTVD--LAKTVVGTPYYLSPELCQNKPYNY  182 (258)
T ss_pred             HHHHHHHHHHHHHHHHhCCEecccCChHHeEEcCCCcEEECCccceeecccCcc--eecceeeeecccChhHhccCCCCc
Confidence               245788899999999999999999999999999999999999987644321  223356889999999988888999


Q ss_pred             ccceehhhhhhccccCCCCCcCCC
Q 045449          755 RGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       755 ~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      ++||||+|++++++.+|..|+...
T Consensus       183 ~~Dv~slG~~~~~l~~g~~p~~~~  206 (258)
T cd08215         183 KSDIWSLGCVLYELCTLKHPFEGE  206 (258)
T ss_pred             cccHHHHHHHHHHHHcCCCCCCCC
Confidence            999999999999999999998654

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They

>cd07835 STKc_CDK1_like Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases

Probab=99.75  E-value=5.6e-19  Score=187.96  Aligned_cols=136  Identities=28%  Similarity=0.362  Sum_probs=110.8

Q ss_pred             CeEEEEEEehHhh--HHHHHHHHHHHHHHhhcchhhHHH-----------------------------------------
Q 045449          641 GMEVAVKVFHQQY--ERALKSFEDECEVRKRIRHRNLVK-----------------------------------------  677 (823)
Q Consensus       641 ~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~-----------------------------------------  677 (823)
                      |..||||++....  ....+.+.+|++++++++|||+++                                         
T Consensus        24 ~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~l~~~~iv~~~~~~~~~~~~~iv~e~~~~~l~~~~~~~~~~~~~~~~~~~  103 (283)
T cd07835          24 GEIVALKKIRLETEDEGVPSTAIREISLLKELNHPNIVRLLDVVHSENKLYLVFEFLDLDLKKYMDSSPLTGLDPPLIKS  103 (283)
T ss_pred             CCEEEEEEeecccccccchhHHHHHHHHHHhcCCCCccCHhheeccCCeEEEEEeccCcCHHHHHhhCCCCCCCHHHHHH
Confidence            6779999986443  223357889999999999999997                                         


Q ss_pred             HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccCCC-cccccc
Q 045449          678 IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKG-RVSTRG  756 (823)
Q Consensus       678 ~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~  756 (823)
                      ++.|++++|.|+|+.+++|||++|+||+++.++.++|+|||+++.......  ......++..|+|||++.+. .++.++
T Consensus       104 ~~~~i~~~L~~lH~~~~~H~dl~p~nil~~~~~~~~l~df~~~~~~~~~~~--~~~~~~~~~~~~aPE~~~~~~~~~~~~  181 (283)
T cd07835         104 YLYQLLQGIAYCHSHRVLHRDLKPQNLLIDREGALKLADFGLARAFGVPVR--TYTHEVVTLWYRAPEILLGSRQYSTPV  181 (283)
T ss_pred             HHHHHHHHHHHHHHCCeeCCCCCHHHEEEcCCCcEEEeecccccccCCCcc--ccCccccccCCCCCceeecCcccCcHH
Confidence            245788889999999999999999999999999999999999976532211  12234578899999987654 478999


Q ss_pred             ceehhhhhhccccCCCCCcCCC
Q 045449          757 DVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       757 Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      |||||||+++++.+|..||...
T Consensus       182 Di~slG~~l~~l~~g~~pf~~~  203 (283)
T cd07835         182 DIWSIGCIFAEMVNRRPLFPGD  203 (283)
T ss_pred             HHHHHHHHHHHHHhCCCCCCCC
Confidence            9999999999999999988643

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyc

>cd05581 STKc_PDK1 Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

Probab=99.75  E-value=8.2e-19  Score=186.14  Aligned_cols=139  Identities=31%  Similarity=0.418  Sum_probs=115.5

Q ss_pred             CeEEEEEEehHhh---HHHHHHHHHHHHHHhhcc-hhhHHH---------------------------------------
Q 045449          641 GMEVAVKVFHQQY---ERALKSFEDECEVRKRIR-HRNLVK---------------------------------------  677 (823)
Q Consensus       641 ~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~-h~niv~---------------------------------------  677 (823)
                      +..||+|++....   ....+.+.+|++++.+++ |+||++                                       
T Consensus        26 ~~~~~ik~~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~l~~~~~~  105 (280)
T cd05581          26 NKEYAIKILDKRQLIKEKKVKYVKIEKEVLTRLNGHPGIIKLYYTFQDEENLYFVLEYAPNGELLQYIRKYGSLDEKCTR  105 (280)
T ss_pred             CCEEEEEEechHhccchHHHHHHHHHHHHHHhcccCCCchhHHHHhcCCceEEEEEcCCCCCcHHHHHHHcCCCCHHHHH
Confidence            6779999987532   334467899999999998 999998                                       


Q ss_pred             -HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCcc------------------ccccccccC
Q 045449          678 -IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQL------------------SKQTQTLAT  738 (823)
Q Consensus       678 -~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~------------------~~~~~~~gt  738 (823)
                       ++.|++.+|.++|+.+++|+|+||+||+++.++.++++|||++.........                  .......|+
T Consensus       106 ~i~~ql~~~l~~Lh~~~~~H~dl~~~ni~i~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (280)
T cd05581         106 FYAAEILLALEYLHSKGIIHRDLKPENILLDKDMHIKITDFGTAKVLDPNSSPESNKGDATNIDSQIEKNRRRFASFVGT  185 (280)
T ss_pred             HHHHHHHHHHHHHHHCCeeecCCCHHHeEECCCCCEEecCCccccccCCccccccCCCCCccccccccccccccccccCC
Confidence             2467888899999999999999999999999999999999999876433211                  122335678


Q ss_pred             CCcCcccccCCCccccccceehhhhhhccccCCCCCcCCCc
Q 045449          739 IGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGETC  779 (823)
Q Consensus       739 ~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~~  779 (823)
                      ..|+|||+.....++.++||||+|++++++.+|..|+....
T Consensus       186 ~~~~~Pe~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~  226 (280)
T cd05581         186 AEYVSPELLNEKPAGKSSDLWALGCIIYQMLTGKPPFRGSN  226 (280)
T ss_pred             ccccCHHHhCCCCCChhhhHHHHHHHHHHHHhCCCCCCCcc
Confidence            99999999888889999999999999999999999987653

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to auto

>cd07837 STKc_CdkB_plant Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase

Probab=99.75  E-value=7.8e-19  Score=188.04  Aligned_cols=147  Identities=24%  Similarity=0.287  Sum_probs=115.9

Q ss_pred             cCCccceeeccC------------CeEEEEEEehHhhH--HHHHHHHHHHHHHhhcc-hhhHHH----------------
Q 045449          629 RFSENNLIGIGN------------GMEVAVKVFHQQYE--RALKSFEDECEVRKRIR-HRNLVK----------------  677 (823)
Q Consensus       629 ~f~~~~~lg~g~------------~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~-h~niv~----------------  677 (823)
                      +|+..+.+|.|+            +..||||.++....  .....+.+|++++++++ |+||++                
T Consensus         2 ~y~~~~~lg~g~~g~vy~~~~~~~~~~v~lK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~~~~~~~~   81 (295)
T cd07837           2 AYEKLEKIGEGTYGKVYKARDKNTGKLVALKKTRLEMDEEGIPPTALREISLLQMLSESIYIVRLLDVEHVEEKNGKPSL   81 (295)
T ss_pred             CceEeeEecccCCeEEEEEEECCCCcEEEEEeehhhccccCCchHHHHHHHHHHHccCCCCccceeeeEeecCCCCCceE
Confidence            456666676653            67799998865432  22357889999999995 699987                


Q ss_pred             ---------------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCC-CCcEEEeeccccccc
Q 045449          678 ---------------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDE-DMVAHISDFGIAKLL  723 (823)
Q Consensus       678 ---------------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~-~~~~kl~DfGla~~~  723 (823)
                                                       ++.|++++|.|+|+.+|+||||||+||+++. ++.+||+|||+++..
T Consensus        82 ~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~L~~LH~~~i~H~dl~~~nil~~~~~~~~kl~dfg~~~~~  161 (295)
T cd07837          82 YLVFEYLDSDLKKFMDSNGRGPGRPLPAKTIKSFMYQLLKGVAHCHKHGVMHRDLKPQNLLVDKQKGLLKIADLGLGRAF  161 (295)
T ss_pred             EEEeeccCcCHHHHHHHhcccCCCCCCHHHHHHHHHHHHHHHHHHHHCCeeecCCChHHEEEecCCCeEEEeecccceec
Confidence                                             2457788899999999999999999999998 889999999999865


Q ss_pred             CCCCccccccccccCCCcCcccccCC-CccccccceehhhhhhccccCCCCCcCC
Q 045449          724 SGEDQLSKQTQTLATIGYMAPEYGTK-GRVSTRGDVCSFGIISGGKETRSMTVGE  777 (823)
Q Consensus       724 ~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~  777 (823)
                      .....  ......+++.|+|||++.+ ..++.++|||||||++|++.+|..||..
T Consensus       162 ~~~~~--~~~~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~~~~~  214 (295)
T cd07837         162 SIPVK--SYTHEIVTLWYRAPEVLLGSTHYSTPVDIWSVGCIFAEMSRKQPLFPG  214 (295)
T ss_pred             CCCcc--ccCCcccccCCCChHHhhCCCCCCchHHHHHHHHHHHHHHcCCCCCCC
Confidence            33211  1223457889999998765 4579999999999999999999988865

Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developm

>cd06606 STKc_MAPKKK Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

Probab=99.75  E-value=6e-19  Score=184.56  Aligned_cols=139  Identities=29%  Similarity=0.329  Sum_probs=117.8

Q ss_pred             CeEEEEEEehHhh--HHHHHHHHHHHHHHhhcchhhHHH-----------------------------------------
Q 045449          641 GMEVAVKVFHQQY--ERALKSFEDECEVRKRIRHRNLVK-----------------------------------------  677 (823)
Q Consensus       641 ~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~-----------------------------------------  677 (823)
                      +..|++|++....  ....+.+.+|++++++++|+||++                                         
T Consensus        25 ~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~  104 (260)
T cd06606          25 GELMAVKSVELSGDSEEELEALEREIRILSSLQHPNIVRYYGSERDEEKNTLNIFLEYVSGGSLSSLLKKFGKLPEPVIR  104 (260)
T ss_pred             CcEEEEEEeeccccchHHHHHHHHHHHHHHHcCCCCEeeEEEEEecCCCCeEEEEEEecCCCcHHHHHHHcCCCCHHHHH
Confidence            5779999987554  245678999999999999999998                                         


Q ss_pred             -HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccCCCcccccc
Q 045449          678 -IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRG  756 (823)
Q Consensus       678 -~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~  756 (823)
                       ++.+++.+|+|+|+.+++|+|++|+||+++.++.++|+|||.+................++..|+|||...+..++.++
T Consensus       105 ~~~~~l~~~l~~lh~~~~~h~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~y~~pE~~~~~~~~~~~  184 (260)
T cd06606         105 KYTRQILEGLAYLHSNGIVHRDIKGANILVDSDGVVKLADFGCAKRLGDIETGEGTGSVRGTPYWMAPEVIRGEEYGRAA  184 (260)
T ss_pred             HHHHHHHHHHHHHHHCCccccCCCHHHEEEcCCCCEEEcccccEEecccccccccccCCCCCccccCHhhhcCCCCCchh
Confidence             3567888999999999999999999999999999999999999876544321112345688999999999888899999


Q ss_pred             ceehhhhhhccccCCCCCcCCCc
Q 045449          757 DVCSFGIISGGKETRSMTVGETC  779 (823)
Q Consensus       757 Dv~S~Gvv~~~~~~~~~~~~~~~  779 (823)
                      ||||+|++++++++|..||....
T Consensus       185 Dv~slG~il~~l~~g~~p~~~~~  207 (260)
T cd06606         185 DIWSLGCTVIEMATGKPPWSELG  207 (260)
T ss_pred             hHHHHHHHHHHHHhCCCCCCCCC
Confidence            99999999999999999987654

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKK

>cd07836 STKc_Pho85 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85

Probab=99.75  E-value=5.4e-19  Score=188.13  Aligned_cols=136  Identities=27%  Similarity=0.337  Sum_probs=111.5

Q ss_pred             CeEEEEEEehHhh-HHHHHHHHHHHHHHhhcchhhHHH------------------------------------------
Q 045449          641 GMEVAVKVFHQQY-ERALKSFEDECEVRKRIRHRNLVK------------------------------------------  677 (823)
Q Consensus       641 ~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~------------------------------------------  677 (823)
                      |..||||++.... ....+.+.+|++++++++|+||++                                          
T Consensus        25 ~~~~~iK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~  104 (284)
T cd07836          25 GEIVALKEIHLDAEEGTPSTAIREISLMKELKHENIVRLHDVIHTENKLMLVFEYMDKDLKKYMDTHGVRGALDPNTVKS  104 (284)
T ss_pred             CeEEEEEEecccccccchHHHHHHHHHHHhhcCCCEeeeeeeEeeCCcEEEEEecCCccHHHHHHhcCCCCCcCHHHHHH
Confidence            5779999987543 223456788999999999999998                                          


Q ss_pred             HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccCCC-cccccc
Q 045449          678 IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKG-RVSTRG  756 (823)
Q Consensus       678 ~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~  756 (823)
                      ++.|++++|.|+|+.+++||||||+||++++++.+|++|||+++.......  ......++..|+|||++.+. .++.++
T Consensus       105 ~~~qi~~~l~~lH~~~i~h~dl~p~ni~~~~~~~~~l~d~g~~~~~~~~~~--~~~~~~~~~~y~~PE~~~~~~~~~~~~  182 (284)
T cd07836         105 FTYQLLKGIAFCHENRVLHRDLKPQNLLINKRGELKLADFGLARAFGIPVN--TFSNEVVTLWYRAPDVLLGSRTYSTSI  182 (284)
T ss_pred             HHHHHHHHHHHHHHCCeeeCCCCHHHEEECCCCcEEEeecchhhhhcCCcc--ccccccccccccChHHhcCCCCCCcHH
Confidence            356788999999999999999999999999999999999999976533211  12234578999999987654 468899


Q ss_pred             ceehhhhhhccccCCCCCcCCC
Q 045449          757 DVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       757 Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      ||||+||+++++.+|..||.+.
T Consensus       183 Dv~slG~~l~~l~~g~~~~~~~  204 (284)
T cd07836         183 DIWSVGCIMAEMITGRPLFPGT  204 (284)
T ss_pred             HHHHHHHHHHHHHhCCCCCCCC
Confidence            9999999999999999988654

Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment.

>cd07864 STKc_CDK12 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

Probab=99.75  E-value=6.4e-19  Score=189.41  Aligned_cols=153  Identities=30%  Similarity=0.399  Sum_probs=121.2

Q ss_pred             HHhccCCccceeeccC------------CeEEEEEEehHhh--HHHHHHHHHHHHHHhhcchhhHHH-------------
Q 045449          625 RATDRFSENNLIGIGN------------GMEVAVKVFHQQY--ERALKSFEDECEVRKRIRHRNLVK-------------  677 (823)
Q Consensus       625 ~at~~f~~~~~lg~g~------------~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~-------------  677 (823)
                      .+.++|+..+.+|.|+            +..||||+++...  ......+.+|++++++++||||++             
T Consensus         4 ~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~~~~~~~~~~~~~~   83 (302)
T cd07864           4 RCVDKFDIIGQIGEGTYGQVYKARDKDTGELVALKKVRLDNEKEGFPITAIREIKILRQLNHRNIVNLKEIVTDKQDALD   83 (302)
T ss_pred             hhhhhhheeeeecccCCEEEEEEEECCCCcEEEEEEEeecccccCchHHHHHHHHHHHhCCCCCeeeeeheecCcchhhh
Confidence            3456777777888774            5679999986432  223356788999999999999986             


Q ss_pred             -------------------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccc
Q 045449          678 -------------------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIA  720 (823)
Q Consensus       678 -------------------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla  720 (823)
                                                           ++.|++.+|+|+|+.+|+|||+||+||++++++.+||+|||++
T Consensus        84 ~~~~~~~~~lv~e~~~~~l~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~i~H~dl~p~nili~~~~~~kl~dfg~~  163 (302)
T cd07864          84 FKKDKGAFYLVFEYMDHDLMGLLESGLVHFSEDHIKSFMKQLLEGLNYCHKKNFLHRDIKCSNILLNNKGQIKLADFGLA  163 (302)
T ss_pred             ccccCCcEEEEEcccCccHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEECCCCcEEeCccccc
Confidence                                                 2457888999999999999999999999999999999999999


Q ss_pred             cccCCCCccccccccccCCCcCcccccCC-CccccccceehhhhhhccccCCCCCcCCC
Q 045449          721 KLLSGEDQLSKQTQTLATIGYMAPEYGTK-GRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       721 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      +....... .......++..|+|||.+.+ ..++.++||||+||+++++.+|..||...
T Consensus       164 ~~~~~~~~-~~~~~~~~~~~y~~PE~~~~~~~~~~~~Di~slG~~~~el~~g~~~~~~~  221 (302)
T cd07864         164 RLYNSEES-RPYTNKVITLWYRPPELLLGEERYGPAIDVWSCGCILGELFTKKPIFQAN  221 (302)
T ss_pred             ccccCCcc-cccccceeccCccChHHhcCCCCCCchhHHHHHHHHHHHHHhCCCCCCCC
Confidence            87643322 11223356888999998764 35789999999999999999999888653

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely

>cd05118 STKc_CMGC Catalytic domain of CMGC family Serine/Threonine Kinases

Probab=99.74  E-value=1.6e-18  Score=184.30  Aligned_cols=135  Identities=31%  Similarity=0.376  Sum_probs=113.0

Q ss_pred             CeEEEEEEehHhhH--HHHHHHHHHHHHHhhcchhhHHH----------------------------------------H
Q 045449          641 GMEVAVKVFHQQYE--RALKSFEDECEVRKRIRHRNLVK----------------------------------------I  678 (823)
Q Consensus       641 ~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~niv~----------------------------------------~  678 (823)
                      +..||+|++.....  .....+.+|++++++++|+||++                                        +
T Consensus        24 ~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~~~~l~~~l~~~~~~~~~~~~~~~  103 (283)
T cd05118          24 GEIVAIKKIKLRFESEGIPKTALREIKLLKELNHPNIIKLLDVFRHKGDLYLVFEFMDTDLYKLIKDRQRGLPESLIKSY  103 (283)
T ss_pred             CcEEEEEEeccccccchhHHHHHHHHHHHHHhcCCCcchHHHhhccCCCEEEEEeccCCCHHHHHHhhcccCCHHHHHHH
Confidence            57799999865432  34568889999999999999998                                        2


Q ss_pred             HHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccCCC-ccccccc
Q 045449          679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKG-RVSTRGD  757 (823)
Q Consensus       679 ~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~D  757 (823)
                      +.|++++|.++|+.+|+|+||||+||+++.++.+||+|||.+.......  .......++..|+|||...+. .++.++|
T Consensus       104 ~~~i~~~l~~LH~~~i~H~dl~p~nili~~~~~~~l~df~~~~~~~~~~--~~~~~~~~~~~~~~PE~~~~~~~~~~~~D  181 (283)
T cd05118         104 LYQLLQGLAFCHSHGILHRDLKPENLLINTEGVLKLADFGLARSFGSPV--RPYTHYVVTRWYRAPELLLGDKGYSTPVD  181 (283)
T ss_pred             HHHHHHHHHHHHHCCeeecCcCHHHEEECCCCcEEEeeeeeeEecCCCc--ccccCccCcccccCcHHHhcCCCCCchhH
Confidence            4678889999999999999999999999999999999999998765432  112334688899999988776 6899999


Q ss_pred             eehhhhhhccccCCCCCcCC
Q 045449          758 VCSFGIISGGKETRSMTVGE  777 (823)
Q Consensus       758 v~S~Gvv~~~~~~~~~~~~~  777 (823)
                      |||+||+++++.+|..+|..
T Consensus       182 i~slG~~l~~l~tg~~~~~~  201 (283)
T cd05118         182 IWSVGCIFAELLSRRPLFPG  201 (283)
T ss_pred             HHHHHHHHHHHHhCCCCCCC
Confidence            99999999999999988754

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They

>cd05583 STKc_MSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase

Probab=99.74  E-value=2.6e-18  Score=183.32  Aligned_cols=136  Identities=27%  Similarity=0.312  Sum_probs=111.1

Q ss_pred             CeEEEEEEehHhh----HHHHHHHHHHHHHHhhc-chhhHHH--------------------------------------
Q 045449          641 GMEVAVKVFHQQY----ERALKSFEDECEVRKRI-RHRNLVK--------------------------------------  677 (823)
Q Consensus       641 ~~~vavK~~~~~~----~~~~~~~~~E~~~l~~l-~h~niv~--------------------------------------  677 (823)
                      +..||||+++...    ....+.+.+|++++.++ +||||++                                      
T Consensus        28 ~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~  107 (288)
T cd05583          28 GKLYAMKVLKKATIVQKAKTAEHTRTERQVLEAVRRCPFLVTLHYAFQTDTKLHLILDYVNGGELFTHLYQREHFTESEV  107 (288)
T ss_pred             CcEEEEEEEehHHHHhhhhHHHHHHHHHHHHHhccCCcchhhhheeeecCCEEEEEEecCCCCcHHHHHhhcCCcCHHHH
Confidence            4669999886432    23446788999999999 5999998                                      


Q ss_pred             --HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccCCCc--cc
Q 045449          678 --IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGR--VS  753 (823)
Q Consensus       678 --~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~--~~  753 (823)
                        ++.|++++|.|+|+.+++||||||+||+++.++.++++|||+++........ ......|+..|+|||...+..  .+
T Consensus       108 ~~~~~ql~~~l~~lH~~~~~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~  186 (288)
T cd05583         108 RVYIAEIVLALDHLHQLGIIYRDIKLENILLDSEGHVVLTDFGLSKEFLAEEEE-RAYSFCGTIEYMAPEVIRGGSGGHD  186 (288)
T ss_pred             HHHHHHHHHHHHHHHHCCeeccCCCHHHeEECCCCCEEEEECcccccccccccc-ccccccCCccccCHHHhcCCCCCCc
Confidence              2458888999999999999999999999999999999999998875433221 122346899999999987655  78


Q ss_pred             cccceehhhhhhccccCCCCCcCC
Q 045449          754 TRGDVCSFGIISGGKETRSMTVGE  777 (823)
Q Consensus       754 ~~~Dv~S~Gvv~~~~~~~~~~~~~  777 (823)
                      .++||||||++++++.+|..||..
T Consensus       187 ~~~Dv~slG~il~el~tg~~p~~~  210 (288)
T cd05583         187 KAVDWWSLGVLTFELLTGASPFTV  210 (288)
T ss_pred             chhhhHHHHHHHHHHHhCCCCccc
Confidence            899999999999999999999853

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines

>cd07840 STKc_CDK9_like Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

Probab=99.74  E-value=1.1e-18  Score=185.85  Aligned_cols=137  Identities=28%  Similarity=0.349  Sum_probs=112.9

Q ss_pred             CeEEEEEEehHhh--HHHHHHHHHHHHHHhhcchhhHHH-----------------------------------------
Q 045449          641 GMEVAVKVFHQQY--ERALKSFEDECEVRKRIRHRNLVK-----------------------------------------  677 (823)
Q Consensus       641 ~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~-----------------------------------------  677 (823)
                      +..||||++....  ....+.+.+|++++++++|+|+++                                         
T Consensus        24 ~~~~~~K~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~  103 (287)
T cd07840          24 GELVALKKIRMENEKEGFPITAIREIKLLQKLRHPNIVRLKEIVTSKGKGSIYMVFEYMDHDLTGLLDSPEVKFTESQIK  103 (287)
T ss_pred             CeEEEEEEEecccccccchHHHHHHHHHHHhccCCCeeeheeeEecCCCCcEEEEeccccccHHHHHhccCCCCCHHHHH
Confidence            5789999997653  334467889999999999999887                                         


Q ss_pred             -HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccCC-Cccccc
Q 045449          678 -IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTK-GRVSTR  755 (823)
Q Consensus       678 -~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~  755 (823)
                       ++.|++++|.++|+.+++|+||||+||++++++.+|++|||+++....... .......++..|+|||.+.+ ..++.+
T Consensus       104 ~i~~~i~~al~~LH~~~~~h~dl~p~nil~~~~~~~~l~d~g~~~~~~~~~~-~~~~~~~~~~~y~~PE~~~~~~~~~~~  182 (287)
T cd07840         104 CYMKQLLEGLQYLHSNGILHRDIKGSNILINNDGVLKLADFGLARPYTKRNS-ADYTNRVITLWYRPPELLLGATRYGPE  182 (287)
T ss_pred             HHHHHHHHHHHHHHHCCceeccCcHHHeEEcCCCCEEEccccceeeccCCCc-ccccccccccccCCceeeEccccCChH
Confidence             246788889999999999999999999999999999999999987654332 11233457889999997664 457899


Q ss_pred             cceehhhhhhccccCCCCCcCCC
Q 045449          756 GDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       756 ~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      +|||||||+++++.+|..||...
T Consensus       183 ~Dv~slG~~l~el~t~~~p~~~~  205 (287)
T cd07840         183 VDMWSVGCILAELFLGKPIFQGS  205 (287)
T ss_pred             HHHHHHHHHHHHHHhCCCCCCCC
Confidence            99999999999999999998654

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA po

>cd05633 STKc_GRK3 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 3

Probab=99.74  E-value=1.2e-18  Score=185.14  Aligned_cols=135  Identities=24%  Similarity=0.221  Sum_probs=104.4

Q ss_pred             CCeEEEEEEehHhh---HHHHHHHHHHHHHHhh---cchhhHHH------------------------------------
Q 045449          640 NGMEVAVKVFHQQY---ERALKSFEDECEVRKR---IRHRNLVK------------------------------------  677 (823)
Q Consensus       640 ~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~---l~h~niv~------------------------------------  677 (823)
                      .+..||||.+....   ......+.+|..++..   .+||+|+.                                    
T Consensus        18 ~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~i~~~~~l~~~   97 (279)
T cd05633          18 TGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMTYAFHTPDKLCFILDLMNGGDLHYHLSQHGVFSEK   97 (279)
T ss_pred             CCcEEEEEEEEccccccchHHHHHHHHHHHHHHHhhCCCCcEeEEEEEEecCCeEEEEEecCCCCCHHHHHHhcCCCCHH
Confidence            36789999886432   1222334455444333   36888876                                    


Q ss_pred             ----HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccCC-Ccc
Q 045449          678 ----IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTK-GRV  752 (823)
Q Consensus       678 ----~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~  752 (823)
                          ++.|++.+|.|+|+.+|+||||||+||+++.++.+|++|||+++......    .....||..|+|||.... ..+
T Consensus        98 ~~~~i~~qi~~al~~lH~~~ivH~dikp~Nil~~~~~~~~l~dfg~~~~~~~~~----~~~~~~~~~y~aPE~~~~~~~~  173 (279)
T cd05633          98 EMRFYATEIILGLEHMHNRFVVYRDLKPANILLDEHGHVRISDLGLACDFSKKK----PHASVGTHGYMAPEVLQKGTAY  173 (279)
T ss_pred             HHHHHHHHHHHHHHHHHHCCcCCCCCCHHHEEECCCCCEEEccCCcceeccccC----ccCcCCCcCccCHHHhcCCCCC
Confidence                35688889999999999999999999999999999999999987653221    123468999999998864 558


Q ss_pred             ccccceehhhhhhccccCCCCCcCCC
Q 045449          753 STRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       753 ~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      +.++||||+||+++++.+|..||.+.
T Consensus       174 ~~~~Di~slG~~l~~l~~g~~pf~~~  199 (279)
T cd05633         174 DSSADWFSLGCMLFKLLRGHSPFRQH  199 (279)
T ss_pred             CchhhhHHHHHHHHHHHhCCCCcCCC
Confidence            99999999999999999999998654

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK3 (also known as beta-adrenergic receptor kinase 2) is wi

>PTZ00024 cyclin-dependent protein kinase; Provisional

Probab=99.74  E-value=1e-18  Score=190.86  Aligned_cols=138  Identities=24%  Similarity=0.270  Sum_probs=109.8

Q ss_pred             CeEEEEEEehHhhHHH--------------HHHHHHHHHHHhhcchhhHHH-----------------------------
Q 045449          641 GMEVAVKVFHQQYERA--------------LKSFEDECEVRKRIRHRNLVK-----------------------------  677 (823)
Q Consensus       641 ~~~vavK~~~~~~~~~--------------~~~~~~E~~~l~~l~h~niv~-----------------------------  677 (823)
                      +..||||.+.......              ...+.+|++++++++|+||++                             
T Consensus        34 ~~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~l~~~l~~~  113 (335)
T PTZ00024         34 GKIVAIKKVKIIEISNDVTKDRQLVGMCGIHFTTLRELKIMNEIKHENIMGLVDVYVEGDFINLVMDIMASDLKKVVDRK  113 (335)
T ss_pred             CCeEEEEEeeccccccccccchhhhcccccchhHHHHHHHHHhCCCcceeeeeEEEecCCcEEEEEeccccCHHHHHHhc
Confidence            5779999886432111              125789999999999999987                             


Q ss_pred             ----------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCC------------cccccccc
Q 045449          678 ----------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGED------------QLSKQTQT  735 (823)
Q Consensus       678 ----------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~------------~~~~~~~~  735 (823)
                                ++.|++.+|+++|+.+++||||||+||+++.++.+|++|||+++......            ........
T Consensus       114 ~~~~~~~~~~~~~ql~~aL~~LH~~~i~H~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (335)
T PTZ00024        114 IRLTESQVKCILLQILNGLNVLHKWYFMHRDLSPANIFINSKGICKIADFGLARRYGYPPYSDTLSKDETMQRREEMTSK  193 (335)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhCCeecccccHHHeEECCCCCEEECCccceeeccccccccccccccccccccccccc
Confidence                      35788999999999999999999999999999999999999998654111            00111234


Q ss_pred             ccCCCcCcccccCCC-ccccccceehhhhhhccccCCCCCcCCC
Q 045449          736 LATIGYMAPEYGTKG-RVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       736 ~gt~~y~aPE~~~~~-~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      .+++.|+|||++.+. .++.++||||+||+++++++|..||...
T Consensus       194 ~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~~~  237 (335)
T PTZ00024        194 VVTLWYRAPELLMGAEKYHFAVDMWSVGCIFAELLTGKPLFPGE  237 (335)
T ss_pred             ccccCCCCChhcccCCCCCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence            578899999988764 4689999999999999999999888653

>cd05606 STKc_beta_ARK Catalytic domain of the Protein Serine/Threonine Kinase, beta-adrenergic receptor kinase

Probab=99.74  E-value=2.2e-18  Score=182.86  Aligned_cols=136  Identities=25%  Similarity=0.244  Sum_probs=105.4

Q ss_pred             cCCeEEEEEEehHhh---HHHHHHHHHHHH---HHhhcchhhHHH-----------------------------------
Q 045449          639 GNGMEVAVKVFHQQY---ERALKSFEDECE---VRKRIRHRNLVK-----------------------------------  677 (823)
Q Consensus       639 g~~~~vavK~~~~~~---~~~~~~~~~E~~---~l~~l~h~niv~-----------------------------------  677 (823)
                      ..++.||+|++....   ......+..|..   .++...||+|++                                   
T Consensus        17 ~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~v~e~~~g~~L~~~l~~~~~l~~   96 (278)
T cd05606          17 DTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKLSFILDLMNGGDLHYHLSQHGVFSE   96 (278)
T ss_pred             cCCCEEEEEEeeccccccchhHHHHHHHHHHHHHHHhCCCCcEeeeeeeeecCCEEEEEEecCCCCcHHHHHHhcCCCCH
Confidence            346789999886532   112223444443   344457888886                                   


Q ss_pred             -----HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccCCC-c
Q 045449          678 -----IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKG-R  751 (823)
Q Consensus       678 -----~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~  751 (823)
                           ++.|++.+|+|+|+.+|+||||||+||+++.++.+||+|||+++......    .....|+..|+|||++.++ .
T Consensus        97 ~~~~~~~~ql~~~l~~lH~~~i~H~di~p~nili~~~~~~kl~dfg~~~~~~~~~----~~~~~~~~~y~aPE~~~~~~~  172 (278)
T cd05606          97 AEMRFYAAEIILGLEHMHNRFVVYRDLKPANILLDEHGHVRISDLGLACDFSKKK----PHASVGTHGYMAPEVLQKGVA  172 (278)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCEEcCCCCHHHEEECCCCCEEEccCcCccccCccC----CcCcCCCcCCcCcHHhcCCCC
Confidence                 35688889999999999999999999999999999999999987653322    1234689999999998754 5


Q ss_pred             cccccceehhhhhhccccCCCCCcCCC
Q 045449          752 VSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       752 ~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      ++.++||||+||+++++++|..||.+.
T Consensus       173 ~~~~~Di~s~G~~l~~l~~g~~p~~~~  199 (278)
T cd05606         173 YDSSADWFSLGCMLFKLLRGHSPFRQH  199 (278)
T ss_pred             CCcccchHhHHHHHHHHHhCCCCCCCC
Confidence            899999999999999999999998764

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, beta-adrenergic receptor kinase (beta-ARK) group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. The beta-ARK group is co

>cd07831 STKc_MOK Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase

Probab=99.74  E-value=2.2e-18  Score=183.24  Aligned_cols=133  Identities=22%  Similarity=0.294  Sum_probs=107.6

Q ss_pred             CeEEEEEEehHhh-HHHHHHHHHHHHHHhhcc-hhhHHH-----------------------------------------
Q 045449          641 GMEVAVKVFHQQY-ERALKSFEDECEVRKRIR-HRNLVK-----------------------------------------  677 (823)
Q Consensus       641 ~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~-h~niv~-----------------------------------------  677 (823)
                      +..||+|++.... ........+|+.++.++. |+|+++                                         
T Consensus        24 ~~~~aik~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~~~~lv~e~~~~~l~~~l~~~~~~~~~~~~~  103 (282)
T cd07831          24 GKYYAIKCMKKHFKSLEQVNNLREIQALRRLSPHPNILRLIEVLFDRKTGRLALVFELMDMNLYELIKGRKRPLPEKRVK  103 (282)
T ss_pred             CcEEEEEEehhccCCchhhhHHHHHHHHhhcCCCCCccceEEEEecCCCCcEEEEEecCCccHHHHHHhccCCCCHHHHH
Confidence            5779999987543 122234557888999885 999998                                         


Q ss_pred             -HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccCC-Cccccc
Q 045449          678 -IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTK-GRVSTR  755 (823)
Q Consensus       678 -~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~  755 (823)
                       ++.|++.+|+|+|+.+++||||||+||+++. +.+||+|||+++.......   .....++..|+|||+... +.++.+
T Consensus       104 ~~~~qi~~~L~~LH~~~i~H~dl~p~ni~l~~-~~~kl~dfg~~~~~~~~~~---~~~~~~~~~y~aPE~~~~~~~~~~~  179 (282)
T cd07831         104 SYMYQLLKSLDHMHRNGIFHRDIKPENILIKD-DILKLADFGSCRGIYSKPP---YTEYISTRWYRAPECLLTDGYYGPK  179 (282)
T ss_pred             HHHHHHHHHHHHHHHCCceecccCHHHEEEcC-CCeEEEecccccccccCCC---cCCCCCCcccCChhHhhcCCCCCcc
Confidence             3578889999999999999999999999999 9999999999987643322   123467899999997644 457889


Q ss_pred             cceehhhhhhccccCCCCCcCC
Q 045449          756 GDVCSFGIISGGKETRSMTVGE  777 (823)
Q Consensus       756 ~Dv~S~Gvv~~~~~~~~~~~~~  777 (823)
                      +||||+||+++++.+|..||..
T Consensus       180 ~Di~slGv~l~el~~~~~p~~~  201 (282)
T cd07831         180 MDIWAVGCVFFEILSLFPLFPG  201 (282)
T ss_pred             hhHHHHHHHHHHHHcCCcCCCC
Confidence            9999999999999999988864

Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation.

>cd08226 PK_STRAD_beta Pseudokinase domain of STE20-related kinase adapter protein beta

Probab=99.73  E-value=1.7e-18  Score=188.39  Aligned_cols=139  Identities=22%  Similarity=0.326  Sum_probs=109.6

Q ss_pred             CCeEEEEEEehHhh--HHHHHHHHHHHHHHhhcchhhHHH----------------------------------------
Q 045449          640 NGMEVAVKVFHQQY--ERALKSFEDECEVRKRIRHRNLVK----------------------------------------  677 (823)
Q Consensus       640 ~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~----------------------------------------  677 (823)
                      .|+.||||++....  ....+.+.+|+.+++.++||||++                                        
T Consensus        24 ~~~~vaiK~~~~~~~~~~~~~~~~~e~~~~~~l~h~niv~~~~~~~~~~~~~~v~e~~~~~~l~~~l~~~~~~~~~~~~~  103 (328)
T cd08226          24 TGTLVTVRITDLENCTEEHLKALQNEVVLSHFFRHPNIMTSWTVFTTGSWLWVISPFMAYGSANSLLKTYFPEGMSEALI  103 (328)
T ss_pred             CCcEEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCcceEeeeEecCCceEEEEecccCCCHHHHHHhhcccCCCHHHH
Confidence            36889999986432  344578999999999999999997                                        


Q ss_pred             --HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccc-----cccccccCCCcCcccccCCC
Q 045449          678 --IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLS-----KQTQTLATIGYMAPEYGTKG  750 (823)
Q Consensus       678 --~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~-----~~~~~~gt~~y~aPE~~~~~  750 (823)
                        ++.|++++|.|+|+.+|+||||||+||+++.++.+|++|||.+..........     ......++..|+|||++.+.
T Consensus       104 ~~~~~qi~~aL~~lH~~~ivHrDlkp~Nill~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~  183 (328)
T cd08226         104 GNILFGALRGLNYLHQNGYIHRNIKASHILISGDGLVSLSGLSHLYSLVRNGQKAKVVYDFPQFSTSVLPWLSPELLRQD  183 (328)
T ss_pred             HHHHHHHHHHHHHHHhCCeecCCCCHHHEEEeCCCcEEEechHHHhhhhccCccccccccccccccCccCccChhhhcCC
Confidence              24678889999999999999999999999999999999998654332211100     01112356779999998764


Q ss_pred             --ccccccceehhhhhhccccCCCCCcCCC
Q 045449          751 --RVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       751 --~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                        .++.++||||+||+++++.+|..||.+.
T Consensus       184 ~~~~~~~~DiwslG~~l~el~~g~~p~~~~  213 (328)
T cd08226         184 LYGYNVKSDIYSVGITACELATGRVPFQDM  213 (328)
T ss_pred             CCCCCchhhHHHHHHHHHHHHhCCCCCCCc
Confidence              4789999999999999999999999764

Protein Kinase family, STE20-related kinase adapter protein (STRAD) beta subfamily, pseudokinase domain. The STRAD-beta subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpig

>cd07838 STKc_CDK4_6_like Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases

Probab=99.73  E-value=3e-18  Score=182.60  Aligned_cols=135  Identities=33%  Similarity=0.363  Sum_probs=109.9

Q ss_pred             CeEEEEEEehHhh--HHHHHHHHHHHHHHhhc---chhhHHH--------------------------------------
Q 045449          641 GMEVAVKVFHQQY--ERALKSFEDECEVRKRI---RHRNLVK--------------------------------------  677 (823)
Q Consensus       641 ~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l---~h~niv~--------------------------------------  677 (823)
                      +..||||++....  ......+.+|++++.++   .|+|+++                                      
T Consensus        24 ~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~~~~~~~~~~l~~e~~~~~l~~~l~~~~~~~  103 (287)
T cd07838          24 GRFVALKKVRVPLSEEGIPLSTLREIALLKQLESFEHPNIVRLLDVCHGPRTDRELKLTLVFEHVDQDLATYLSKCPKPG  103 (287)
T ss_pred             CCEEEEEEeccccccchhhhhHHHHHHHHHHhhccCCCCcceEEEEEeeccCCCCceeEEEehhcccCHHHHHHHccCCC
Confidence            5789999996432  22235677788877766   5999887                                      


Q ss_pred             --------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccCC
Q 045449          678 --------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTK  749 (823)
Q Consensus       678 --------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~  749 (823)
                              ++.|++++|.++|+.+++|+|+||+||+++.++.+||+|||.++.......   .....++..|+|||++.+
T Consensus       104 l~~~~~~~~~~~i~~al~~LH~~~i~h~~l~~~nili~~~~~~~l~dfg~~~~~~~~~~---~~~~~~~~~~~~PE~~~~  180 (287)
T cd07838         104 LPPETIKDLMRQLLRGVDFLHSHRIVHRDLKPQNILVTSDGQVKIADFGLARIYSFEMA---LTSVVVTLWYRAPEVLLQ  180 (287)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCeeeccCChhhEEEccCCCEEEeccCcceeccCCcc---cccccccccccChHHhcc
Confidence                    346788889999999999999999999999999999999999987643322   123457889999999998


Q ss_pred             CccccccceehhhhhhccccCCCCCcCCC
Q 045449          750 GRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       750 ~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      ..++.++|||||||+++++.+|..||...
T Consensus       181 ~~~~~~~Di~s~G~~l~~l~~~~~~~~~~  209 (287)
T cd07838         181 SSYATPVDMWSVGCIFAELFRRRPLFRGT  209 (287)
T ss_pred             CCCCCcchhhhHHHHHHHHHhCCCcccCC
Confidence            88999999999999999999998887653

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both

>cd07829 STKc_CDK_like Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

Probab=99.73  E-value=3.3e-18  Score=181.80  Aligned_cols=136  Identities=32%  Similarity=0.369  Sum_probs=112.8

Q ss_pred             CeEEEEEEehHhh--HHHHHHHHHHHHHHhhcchhhHHH----------------------------------------H
Q 045449          641 GMEVAVKVFHQQY--ERALKSFEDECEVRKRIRHRNLVK----------------------------------------I  678 (823)
Q Consensus       641 ~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~----------------------------------------~  678 (823)
                      +..||+|++....  ....+.+..|++++++++|+|+++                                        +
T Consensus        24 ~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~~v~e~~~~~l~~~i~~~~~~~~~~~~~~~  103 (282)
T cd07829          24 GEIVALKKIRLDNEEEGIPSTALREISLLKELKHPNIVKLLDVIHTERKLYLVFEYCDMDLKKYLDKRPGPLSPNLIKSI  103 (282)
T ss_pred             CcEEEEEEeccccccccccHHHHHHHHHHHhcCCCCHHHHHhhhhcCCceEEEecCcCcCHHHHHHhhccCCCHHHHHHH
Confidence            5789999987653  333467889999999999999998                                        2


Q ss_pred             HHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccCCC-ccccccc
Q 045449          679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKG-RVSTRGD  757 (823)
Q Consensus       679 ~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~D  757 (823)
                      +.+++.+|+++|+.+|+||||+|+||++++++.+||+|||.++.......  ......++..|+|||++... .++.++|
T Consensus       104 ~~~i~~~l~~LH~~~i~H~~l~~~ni~~~~~~~~~l~d~g~~~~~~~~~~--~~~~~~~~~~~~aPE~~~~~~~~~~~~D  181 (282)
T cd07829         104 MYQLLRGLAYCHSHRILHRDLKPQNILINRDGVLKLADFGLARAFGIPLR--TYTHEVVTLWYRAPEILLGSKHYSTAVD  181 (282)
T ss_pred             HHHHHHHHHHHHHCCcccCCCChheEEEcCCCCEEEecCCcccccCCCcc--ccCccccCcCcCChHHhcCCcCCCcccc
Confidence            46778899999999999999999999999999999999999987643321  12234567889999988766 7899999


Q ss_pred             eehhhhhhccccCCCCCcCCC
Q 045449          758 VCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       758 v~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      ||||||++++++++..||...
T Consensus       182 v~slG~~l~~l~~~~~~~~~~  202 (282)
T cd07829         182 IWSVGCIFAEMITGKPLFPGD  202 (282)
T ss_pred             HHHHHHHHHHHHhCCCCCCCc
Confidence            999999999999998888653

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the

>PLN03225 Serine/threonine-protein kinase SNT7; Provisional

Probab=99.73  E-value=6.4e-18  Score=194.81  Aligned_cols=100  Identities=27%  Similarity=0.248  Sum_probs=79.5

Q ss_pred             HHHHHHHHHhhhcCCCCEEeccCCCCCEEeCC-CCcEEEeecccccccCCCCccccccccccCCCcCcccccCCC-----
Q 045449          677 KIISSSLEYLHFGHSIPIIHCDLKPSNVLLDE-DMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKG-----  750 (823)
Q Consensus       677 ~~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~-~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-----  750 (823)
                      .++.|++.+|+|+|+++|+||||||+|||++. ++.+||+|||+|+.+...... ......||+.|+|||.+...     
T Consensus       259 ~i~~qll~aL~yLH~~gIiHRDLKP~NILl~~~~~~~KL~DFGlA~~l~~~~~~-~~~~~~~t~~Y~APE~~~~~~~~~~  337 (566)
T PLN03225        259 TIMRQILFALDGLHSTGIVHRDVKPQNIIFSEGSGSFKIIDLGAAADLRVGINY-IPKEFLLDPRYAAPEQYIMSTQTPS  337 (566)
T ss_pred             HHHHHHHHHHHHHHHCCEEeCcCCHHHEEEeCCCCcEEEEeCCCcccccccccc-CCcccccCCCccChHHhhccCCCCC
Confidence            46788999999999999999999999999985 579999999999865433221 23456789999999964322     


Q ss_pred             -----------------ccccccceehhhhhhccccCCCCCcCC
Q 045449          751 -----------------RVSTRGDVCSFGIISGGKETRSMTVGE  777 (823)
Q Consensus       751 -----------------~~~~~~Dv~S~Gvv~~~~~~~~~~~~~  777 (823)
                                       .++.++||||+||++|+|+++..++..
T Consensus       338 ~~~~~~~~~~sp~l~~~~~~~k~DVwSlGviL~el~~~~~~~~~  381 (566)
T PLN03225        338 APSAPVATALSPVLWQLNLPDRFDIYSAGLIFLQMAFPNLRSDS  381 (566)
T ss_pred             CccccccccccchhccccCCCCcccHHHHHHHHHHHhCcCCCch
Confidence                             234567999999999999987766543

>cd05123 STKc_AGC Catalytic domain of AGC family Protein Serine/Threonine Kinases

Probab=99.73  E-value=4.1e-18  Score=177.58  Aligned_cols=138  Identities=30%  Similarity=0.327  Sum_probs=116.1

Q ss_pred             CCeEEEEEEehHhhH---HHHHHHHHHHHHHhhcchhhHHH---------------------------------------
Q 045449          640 NGMEVAVKVFHQQYE---RALKSFEDECEVRKRIRHRNLVK---------------------------------------  677 (823)
Q Consensus       640 ~~~~vavK~~~~~~~---~~~~~~~~E~~~l~~l~h~niv~---------------------------------------  677 (823)
                      .+..||+|++.....   ...+.+..|++++++++|+||++                                       
T Consensus        17 ~~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~~~~L~~~l~~~~~l~~~~~~   96 (250)
T cd05123          17 TGKLYAMKVLKKKKIIKRKEVEHTLTERNILSRINHPFIVKLHYAFQTEEKLYLVLEYAPGGELFSHLSKEGRFSEERAR   96 (250)
T ss_pred             CCcEEEEEEeehhhhcchHHHHHHHHHHHHHHHcCCCcHHHHHHHeecCCeeEEEEecCCCCcHHHHHHhcCCCCHHHHH
Confidence            367899999875532   24568999999999999999998                                       


Q ss_pred             -HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccCCCcccccc
Q 045449          678 -IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRG  756 (823)
Q Consensus       678 -~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~  756 (823)
                       ++.|++++++++|+.+++|+||||+||+++.++.++|+|||++........  ......++..|+|||...+..++.++
T Consensus        97 ~~~~qi~~~l~~lh~~~~~H~~l~p~ni~~~~~~~~~l~d~~~~~~~~~~~~--~~~~~~~~~~~~~Pe~~~~~~~~~~~  174 (250)
T cd05123          97 FYAAEIVLALEYLHSLGIIYRDLKPENILLDADGHIKLTDFGLAKELSSEGS--RTNTFCGTPEYLAPEVLLGKGYGKAV  174 (250)
T ss_pred             HHHHHHHHHHHHHHHCCceecCCCcceEEEcCCCcEEEeecCcceecccCCC--cccCCcCCccccChHHhCCCCCCchh
Confidence             256788999999999999999999999999999999999999987643321  12345688999999999888889999


Q ss_pred             ceehhhhhhccccCCCCCcCCCc
Q 045449          757 DVCSFGIISGGKETRSMTVGETC  779 (823)
Q Consensus       757 Dv~S~Gvv~~~~~~~~~~~~~~~  779 (823)
                      |+||||++++++.+|..||....
T Consensus       175 D~~slG~~~~~l~~g~~p~~~~~  197 (250)
T cd05123         175 DWWSLGVLLYEMLTGKPPFYAED  197 (250)
T ss_pred             hHHHHHHHHHHHHHCCCCCCCCC
Confidence            99999999999999999986543

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.73  E-value=2.4e-19  Score=163.00  Aligned_cols=165  Identities=30%  Similarity=0.519  Sum_probs=118.3

Q ss_pred             cCCCCCCcEEEccCCCCCCCCCCCCCCCCCCCEEECCCCcCcCCCchhhhcCCCCcEEecccccccCccCccccCCCCCC
Q 045449           72 LGNLSSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQLFGSLSSFIFNMSSMTTIDLSINRLSGELPANICKIPSTL  151 (823)
Q Consensus        72 l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~p~~~  151 (823)
                      +.++++++.|-||+|+++ .+|+.+..+.+|++|++++|+|. ..|.+++.+++|+.|+++.|++.        .+|..|
T Consensus        29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~--------~lprgf   98 (264)
T KOG0617|consen   29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN--------ILPRGF   98 (264)
T ss_pred             ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh--------cCcccc
Confidence            567778888888999888 77778888888888888888886 67788888888888888888876        345555


Q ss_pred             ccccccceeeeccceeec-cCccccccchhhHHHHHhhcCCCcccCCcccCCcchhhhhccccccccCCccccccCCCCC
Q 045449          152 SKCKQLEELNLGFNNLSG-AIPKEIGNLTKLKEIISTITNSTVCEIPREIGNLPYLARLALATNNLVGVVPVTIFNMSAL  230 (823)
Q Consensus       152 ~~l~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~~L~~l~~n~~~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L  230 (823)
                      +.++.|++|||.+|+++. .+                         |+.|..++.|.-|+|++|.+. .+|..++++++|
T Consensus        99 gs~p~levldltynnl~e~~l-------------------------pgnff~m~tlralyl~dndfe-~lp~dvg~lt~l  152 (264)
T KOG0617|consen   99 GSFPALEVLDLTYNNLNENSL-------------------------PGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNL  152 (264)
T ss_pred             CCCchhhhhhccccccccccC-------------------------CcchhHHHHHHHHHhcCCCcc-cCChhhhhhcce
Confidence            888888888888888762 23                         344444445555666777666 566667777777


Q ss_pred             cEEEccCCcccccCCcccccCCCCccEEEeeccccccccCccccC
Q 045449          231 KEISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSITN  275 (823)
Q Consensus       231 ~~L~Ls~N~l~g~lp~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~  275 (823)
                      +.|.+..|.+- ++|..++. +..|++|.+.+|+++ .+|+.+++
T Consensus       153 qil~lrdndll-~lpkeig~-lt~lrelhiqgnrl~-vlppel~~  194 (264)
T KOG0617|consen  153 QILSLRDNDLL-SLPKEIGD-LTRLRELHIQGNRLT-VLPPELAN  194 (264)
T ss_pred             eEEeeccCchh-hCcHHHHH-HHHHHHHhcccceee-ecChhhhh
Confidence            77777777766 66666664 666666666666665 44554444

>PHA03390 pk1 serine/threonine-protein kinase 1; Provisional

Probab=99.72  E-value=4.8e-18  Score=179.18  Aligned_cols=95  Identities=26%  Similarity=0.299  Sum_probs=83.9

Q ss_pred             HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCC-cEEEeecccccccCCCCccccccccccCCCcCcccccCCCcccccc
Q 045449          678 IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDM-VAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRG  756 (823)
Q Consensus       678 ~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~-~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~  756 (823)
                      ++.|++.+|.++|+.+++||||||+||+++.++ .++|+|||+++.....      ....|+..|+|||++.+..++.++
T Consensus       114 ~~~qi~~~l~~lH~~~i~H~dl~p~nil~~~~~~~~~l~dfg~~~~~~~~------~~~~~~~~y~aPE~~~~~~~~~~~  187 (267)
T PHA03390        114 IIRQLVEALNDLHKHNIIHNDIKLENVLYDRAKDRIYLCDYGLCKIIGTP------SCYDGTLDYFSPEKIKGHNYDVSF  187 (267)
T ss_pred             HHHHHHHHHHHHHhCCeeeCCCCHHHEEEeCCCCeEEEecCccceecCCC------ccCCCCCcccChhhhcCCCCCchh
Confidence            467889999999999999999999999999888 9999999998865422      224688999999999988999999


Q ss_pred             ceehhhhhhccccCCCCCcCCC
Q 045449          757 DVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       757 Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      ||||+||+++++.+|..||...
T Consensus       188 DvwslG~il~~l~~g~~p~~~~  209 (267)
T PHA03390        188 DWWAVGVLTYELLTGKHPFKED  209 (267)
T ss_pred             hHHHHHHHHHHHHHCCCCCCCC
Confidence            9999999999999999998743

>cd05611 STKc_Rim15_like Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases

Probab=99.72  E-value=5.8e-18  Score=177.73  Aligned_cols=132  Identities=21%  Similarity=0.198  Sum_probs=107.3

Q ss_pred             CeEEEEEEehHhh---HHHHHHHHHHHHHH-hhcchhhHHH---------------------------------------
Q 045449          641 GMEVAVKVFHQQY---ERALKSFEDECEVR-KRIRHRNLVK---------------------------------------  677 (823)
Q Consensus       641 ~~~vavK~~~~~~---~~~~~~~~~E~~~l-~~l~h~niv~---------------------------------------  677 (823)
                      +..||||++....   ......+..|..++ ...+|+|+++                                       
T Consensus        21 ~~~vavK~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~  100 (260)
T cd05611          21 GDYFAIKVLKKSDMIAKNQVTNVKAERAIMMIQGESPYVAKLYYSFQSKDYLYLVMEYLNGGDCASLIKTLGGLPEDWAK  100 (260)
T ss_pred             CCeEEEEEecchhhhHHHHHHHHHHHHHHHhhcCCCCCeeeeeeeEEcCCeEEEEEeccCCCCHHHHHHHcCCCCHHHHH
Confidence            5789999986532   22234455565544 4458999988                                       


Q ss_pred             -HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccCCCcccccc
Q 045449          678 -IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRG  756 (823)
Q Consensus       678 -~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~  756 (823)
                       ++.|++++|.|+|+.+++||||+|+||+++.++.+||+|||+++....      .....|+..|+|||...+..++.++
T Consensus       101 ~i~~qi~~aL~~lH~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~------~~~~~~~~~y~~pe~~~~~~~~~~~  174 (260)
T cd05611         101 QYIAEVVLGVEDLHQRGIIHRDIKPENLLIDQTGHLKLTDFGLSRNGLE------NKKFVGTPDYLAPETILGVGDDKMS  174 (260)
T ss_pred             HHHHHHHHHHHHHHHCCeecCCCCHHHeEECCCCcEEEeecccceeccc------cccCCCCcCccChhhhcCCCCcchh
Confidence             356889999999999999999999999999999999999999876432      1234688999999999888899999


Q ss_pred             ceehhhhhhccccCCCCCcCCC
Q 045449          757 DVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       757 Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      ||||+|++++++.+|..||...
T Consensus       175 Dv~slG~il~~l~~g~~p~~~~  196 (260)
T cd05611         175 DWWSLGCVIFEFLFGYPPFHAE  196 (260)
T ss_pred             hhHHHHHHHHHHHHCCCCCCCC
Confidence            9999999999999999998654

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a do

>KOG0587 consensus Traf2- and Nck-interacting kinase and related germinal center kinase (GCK) family protein kinases [Signal transduction mechanisms]

Probab=99.72  E-value=7.8e-18  Score=188.27  Aligned_cols=156  Identities=26%  Similarity=0.361  Sum_probs=124.8

Q ss_pred             HHHHHHHhccCCccceeeccC------------CeEEEEEEehHhhHHHHHHHHHHHHHHhhc-chhhHHH---------
Q 045449          620 YHELLRATDRFSENNLIGIGN------------GMEVAVKVFHQQYERALKSFEDECEVRKRI-RHRNLVK---------  677 (823)
Q Consensus       620 ~~~l~~at~~f~~~~~lg~g~------------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~---------  677 (823)
                      ++.+-..++-|...+.+|.|.            ++.+|||+.....+. .++.+.|.++++.. .|||++.         
T Consensus        11 ~~~lpdp~d~~ei~evig~Gtygkv~k~k~~~~~~~aa~kI~~~~~d~-deEiE~eynil~~~~~hpnv~~fyg~~~k~~   89 (953)
T KOG0587|consen   11 LSSLPDPADIFEIIEVIGNGTYGKVYKGRHVKTGQLAAIKIMDPTEDE-EEEIELEYNMLKKYSHHPNVATFYGAFIKKD   89 (953)
T ss_pred             hhhCCCCCCccEEEEEEeeccceeEEEEeeeecCceeeeEeecCCccc-cHHHHHHHHHHHhccCCCCcceEEEEEEEec
Confidence            344444567777778888875            556899988766432 35677888888877 7999998         


Q ss_pred             --------------------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeeccc
Q 045449          678 --------------------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGI  719 (823)
Q Consensus       678 --------------------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGl  719 (823)
                                                            ++..++.++.|+|...++|||||-.|||++.++.+|++|||+
T Consensus        90 ~~~~DqLWLVMEfC~gGSVTDLVKn~~g~rl~E~~IaYI~re~lrgl~HLH~nkviHRDikG~NiLLT~e~~VKLvDFGv  169 (953)
T KOG0587|consen   90 PGNGDQLWLVMEFCGGGSVTDLVKNTKGNRLKEEWIAYILREILRGLAHLHNNKVIHRDIKGQNVLLTENAEVKLVDFGV  169 (953)
T ss_pred             CCCCCeEEEEeeccCCccHHHHHhhhcccchhhHHHHHHHHHHHHHHHHHhhcceeeecccCceEEEeccCcEEEeeeee
Confidence                                                  234667789999999999999999999999999999999999


Q ss_pred             ccccCCCCccccccccccCCCcCcccccCCC-----ccccccceehhhhhhccccCCCCCcCCC
Q 045449          720 AKLLSGEDQLSKQTQTLATIGYMAPEYGTKG-----RVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       720 a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-----~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      +..+...  .....+.+|||.|||||++...     .|+.++|+||+|++.-||.-|..|+.+.
T Consensus       170 SaQldsT--~grRnT~iGtP~WMAPEViac~e~~d~tyd~R~D~WsLGITaIEladG~PPl~Dm  231 (953)
T KOG0587|consen  170 SAQLDST--VGRRNTFIGTPYWMAPEVIACDESPDATYDYRSDLWSLGITAIEMAEGAPPLCDM  231 (953)
T ss_pred             eeeeecc--cccccCcCCCcccccceeeecccCCCCCcccccchhhccceeehhcCCCCCccCc
Confidence            9876432  2234467899999999998754     3788999999999999999999888764

>cd07830 STKc_MAK_like Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

Probab=99.71  E-value=1.7e-17  Score=176.43  Aligned_cols=134  Identities=28%  Similarity=0.321  Sum_probs=108.8

Q ss_pred             CeEEEEEEehHhhH-HHHHHHHHHHHHHhhcc-hhhHHH-----------------------------------------
Q 045449          641 GMEVAVKVFHQQYE-RALKSFEDECEVRKRIR-HRNLVK-----------------------------------------  677 (823)
Q Consensus       641 ~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~-h~niv~-----------------------------------------  677 (823)
                      +..||||++..... .......+|++.+++++ |+|+++                                         
T Consensus        24 ~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~  103 (283)
T cd07830          24 GELVAIKKMKKKFYSWEECMNLREVKSLRKLNEHPNIVKLKEVFRENDELYFVFEYMEGNLYQLMKDRKGKPFSESVIRS  103 (283)
T ss_pred             CcEEEEEEehhhccchhHHHHHHHHHHHHhccCCCCchhHHHHhhcCCcEEEEEecCCCCHHHHHHhcccccCCHHHHHH
Confidence            56799999875432 22234567999999999 999998                                         


Q ss_pred             HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccCC-Ccccccc
Q 045449          678 IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTK-GRVSTRG  756 (823)
Q Consensus       678 ~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~  756 (823)
                      ++.|++.+|+|+|+.+++|+||||+||+++.++.++|+|||.++.......   .....++..|+|||++.. ..++.++
T Consensus       104 ~~~~l~~~l~~Lh~~~i~H~dl~~~ni~i~~~~~~~l~d~~~~~~~~~~~~---~~~~~~~~~~~aPE~~~~~~~~~~~~  180 (283)
T cd07830         104 IIYQILQGLAHIHKHGFFHRDLKPENLLVSGPEVVKIADFGLAREIRSRPP---YTDYVSTRWYRAPEILLRSTSYSSPV  180 (283)
T ss_pred             HHHHHHHHHHHHHHCCcccCCCChhhEEEcCCCCEEEeecccceeccCCCC---cCCCCCcccccCceeeecCcCcCCcc
Confidence            245788899999999999999999999999999999999999987643222   233568899999998754 4578999


Q ss_pred             ceehhhhhhccccCCCCCcCC
Q 045449          757 DVCSFGIISGGKETRSMTVGE  777 (823)
Q Consensus       757 Dv~S~Gvv~~~~~~~~~~~~~  777 (823)
                      ||||||++++++.+|..||..
T Consensus       181 Di~s~G~~l~el~~g~~~~~~  201 (283)
T cd07830         181 DIWALGCIMAELYTLRPLFPG  201 (283)
T ss_pred             chhhHHHHHHHHHhCCCccCC
Confidence            999999999999999988754

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertili

>cd05576 STKc_RPK118_like Catalytic domain of the Protein Serine/Threonine Kinases, RPK118 and similar proteins

Probab=99.71  E-value=3.5e-18  Score=176.76  Aligned_cols=96  Identities=23%  Similarity=0.161  Sum_probs=82.2

Q ss_pred             HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccCCCccccccc
Q 045449          678 IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGD  757 (823)
Q Consensus       678 ~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~D  757 (823)
                      ++.|++++|+|+|+.+|+||||||+||+++.++.++++|||.+......     .....++..|+|||...+..++.++|
T Consensus        90 ~~~ql~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~~l~df~~~~~~~~~-----~~~~~~~~~y~aPE~~~~~~~~~~~D  164 (237)
T cd05576          90 WAAEMVVALDALHREGIVCRDLNPNNILLDDRGHIQLTYFSRWSEVEDS-----CDGEAVENMYCAPEVGGISEETEACD  164 (237)
T ss_pred             HHHHHHHHHHHHHhCCeeccCCCHHHEEEcCCCCEEEecccchhccccc-----cccCCcCccccCCcccCCCCCCchhh
Confidence            4578899999999999999999999999999999999999988765322     12345678899999998888999999


Q ss_pred             eehhhhhhccccCCCCCcCCC
Q 045449          758 VCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       758 v~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      |||+||+++++.+|..++...
T Consensus       165 vwslG~il~el~~g~~~~~~~  185 (237)
T cd05576         165 WWSLGAILFELLTGKTLVECH  185 (237)
T ss_pred             HHHHHHHHHHHHHCcchhhcC
Confidence            999999999999999776543

Serine/Threonine Kinases (STKs), RPK118-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RPK118-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily show similarity to human RPK118, which contains an N-terminal Phox homology (PX) domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain containing a long insert. Also included in the family is human RPK60 (or ribosomal protein S6 kinase-like 1), which also contains MIT and kinase domains but lacks a PX domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phospha

>cd08222 STKc_Nek11 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 11

Probab=99.70  E-value=8.1e-18  Score=176.61  Aligned_cols=118  Identities=26%  Similarity=0.355  Sum_probs=99.2

Q ss_pred             HHHHHHHHHHHhhcchhhHHHH--------------------------------------------HHHHHHHhhhcCCC
Q 045449          657 LKSFEDECEVRKRIRHRNLVKI--------------------------------------------ISSSLEYLHFGHSI  692 (823)
Q Consensus       657 ~~~~~~E~~~l~~l~h~niv~~--------------------------------------------~~~~l~~L~~~h~~  692 (823)
                      ..++.+|+.++++++||||+++                                            +.|++++|.|+|+.
T Consensus        46 ~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~  125 (260)
T cd08222          46 TVQANQEAQLLSKLDHPAIVKFHASFLERDAFCIITEYCEGRDLDCKLEELKHTGKTLSENQVCEWFIQLLLGVHYMHQR  125 (260)
T ss_pred             HHHHHHHHHHHHhCCCCcHHHHHHHHhcCCceEEEEEeCCCCCHHHHHHHHhhcccccCHHHHHHHHHHHHHHHHHHHHc
Confidence            3467789999999999999982                                            35778889999999


Q ss_pred             CEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccCCCccccccceehhhhhhccccCCC
Q 045449          693 PIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRS  772 (823)
Q Consensus       693 ~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~  772 (823)
                      +++|+|+||+||+++. +.+|++|||+++.......  ......|++.|+|||...+..++.++||||||++++++.++.
T Consensus       126 ~i~h~~l~~~nili~~-~~~~l~d~g~~~~~~~~~~--~~~~~~~~~~~~~pe~~~~~~~~~~~Dv~slG~~~~~l~~~~  202 (260)
T cd08222         126 RILHRDLKAKNIFLKN-NLLKIGDFGVSRLLMGSCD--LATTFTGTPYYMSPEALKHQGYDSKSDIWSLGCILYEMCCLA  202 (260)
T ss_pred             CccccCCChhheEeec-CCEeecccCceeecCCCcc--cccCCCCCcCccCHHHHccCCCCchhhHHHHHHHHHHHHhCC
Confidence            9999999999999975 5699999999987643322  122346889999999988888899999999999999999999


Q ss_pred             CCcCC
Q 045449          773 MTVGE  777 (823)
Q Consensus       773 ~~~~~  777 (823)
                      .|+..
T Consensus       203 ~~~~~  207 (260)
T cd08222         203 HAFEG  207 (260)
T ss_pred             CCCCC
Confidence            98864

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 11 (Nek11) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek11 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek11 is involved, through direct phosphorylation, in regulating the degradation of Cdc25A (Cell Division Cycle 25 homolog A), which plays a role in cell cycle progression and in activating cyclin dependent kinases. Nek11 is activated by CHK1 (CHeckpoint Kinase 1) and may be involved in the G2/M check

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.70  E-value=3.9e-19  Score=161.66  Aligned_cols=163  Identities=31%  Similarity=0.527  Sum_probs=100.8

Q ss_pred             CCCCCCeEEeecccccccCCCccCCCcccCcccccCccccCCCCcccccccccCCCCceEEEeecCCCCccCCccccccc
Q 045449          275 NSSKLSDLELGENLFSGFIPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGILPKSIGNFS  354 (823)
Q Consensus       275 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~  354 (823)
                      ++...+.|.||+|+++ .+|+.+..+.+|+.|++++|+++..      |.+++.+++|+.|+++-|++. .+|..|+.+ 
T Consensus        31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie~l------p~~issl~klr~lnvgmnrl~-~lprgfgs~-  101 (264)
T KOG0617|consen   31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIEEL------PTSISSLPKLRILNVGMNRLN-ILPRGFGSF-  101 (264)
T ss_pred             chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhhhc------Chhhhhchhhhheecchhhhh-cCccccCCC-
Confidence            3445555566666665 4455566666666666666666553      345566666666666666665 456666666 


Q ss_pred             cccceEEecCCccee-ccCccccCcccccEEEcccCcCCCCchhcccccCCCCEEEccCCCCCCcchHhhhcCCCCCEEE
Q 045449          355 LSLETILMANCSISG-NIPQVVGNLSNLLVLELGGNNLTGPIPVTFSQLQTLQAFDLTRNKLAGPITDELCHLARLHSLV  433 (823)
Q Consensus       355 ~~L~~L~L~~N~l~~-~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  433 (823)
                      +.|+.|+|.+|++.. ..|..|..++.|+.|+|+.|.|. .+|..++++++|+.|.+..|.+- ..|..++.+++|++|.
T Consensus       102 p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelh  179 (264)
T KOG0617|consen  102 PALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELH  179 (264)
T ss_pred             chhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHh
Confidence            456666666665542 45666666777777777777776 56666777777777777776665 5566666666666666


Q ss_pred             cccCcCcccccccccC
Q 045449          434 LQGNKFSGSIPSCLGN  449 (823)
Q Consensus       434 Ls~N~l~g~~p~~~~~  449 (823)
                      +++|+++ .+|..+++
T Consensus       180 iqgnrl~-vlppel~~  194 (264)
T KOG0617|consen  180 IQGNRLT-VLPPELAN  194 (264)
T ss_pred             cccceee-ecChhhhh
Confidence            6666666 44444443

>KOG0200 consensus Fibroblast/platelet-derived growth factor receptor and related receptor tyrosine kinases [Signal transduction mechanisms]

Probab=99.70  E-value=1.4e-17  Score=193.89  Aligned_cols=179  Identities=22%  Similarity=0.266  Sum_probs=129.7

Q ss_pred             eEEEEEEehHhh-HHHHHHHHHHHHHHhhc-chhhHHHH-----------------------------------------
Q 045449          642 MEVAVKVFHQQY-ERALKSFEDECEVRKRI-RHRNLVKI-----------------------------------------  678 (823)
Q Consensus       642 ~~vavK~~~~~~-~~~~~~~~~E~~~l~~l-~h~niv~~-----------------------------------------  678 (823)
                      ..||||.++... ....+.+..|+++|..+ +|+||+.+                                         
T Consensus       329 ~~VaVK~~k~~~~~~~~~~~~~El~~m~~~g~H~niv~llG~~t~~~~~~~v~Ey~~~G~L~~~Lr~~r~~~~~~~~~~~  408 (609)
T KOG0200|consen  329 VTVAVKMLKENASSSEKKDLMSELNVLKELGKHPNIVNLLGACTQDGPLYVIVEYAEHGDLLEFLRKKRVTESIDGSGVF  408 (609)
T ss_pred             EEEEEEecccccCcHHHHHHHHHHHHHHHhcCCcchhhheeeeccCCceEEEEEeccCCcHHHHHHhccccccccccCCC
Confidence            569999997554 34567899999999999 69999982                                         


Q ss_pred             ---------------HHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccc--cCCCc
Q 045449          679 ---------------ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTL--ATIGY  741 (823)
Q Consensus       679 ---------------~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~--gt~~y  741 (823)
                                     ..|++.++.|+++.++||||+-..|||+.++..+||+|||+||.....+.+.. ....  -...|
T Consensus       409 ~~~~~~L~~~dLlsfa~QIa~GMe~L~~~~~vHRDLAaRNVLi~~~~~~kIaDFGlar~~~~~~~y~~-~~~~~~LP~kW  487 (609)
T KOG0200|consen  409 PNERDALTTKDLLSFAYQIANGMEYLASVPCVHRDLAARNVLITKNKVIKIADFGLARDHYNKDYYRT-KSSAGTLPVKW  487 (609)
T ss_pred             ccccCCcCHHHHHHHHHHHHHHHHHHhhCCccchhhhhhhEEecCCCEEEEccccceeccCCCCceEe-cCCCCccceee
Confidence                           24677788888999999999999999999999999999999997655444321 1122  23459


Q ss_pred             CcccccCCCccccccceehhhhhhccccC-CCCCcCCCcccccccccccCCcccccccCCCcccccccccccccccccCC
Q 045449          742 MAPEYGTKGRVSTRGDVCSFGIISGGKET-RSMTVGETCTPVRESKYEVHPATTTIMEHPLPRVGEVMDVDRGKARIQGK  820 (823)
Q Consensus       742 ~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  820 (823)
                      ||||.+....|+.|+|||||||++||+.+ |..|+.+......-..+.........+.++.+.+-++|..+....+.+||
T Consensus       488 mApEsl~~~~ft~kSDVWSfGI~L~EifsLG~~PYp~~~~~~~l~~~l~~G~r~~~P~~c~~eiY~iM~~CW~~~p~~RP  567 (609)
T KOG0200|consen  488 MAPESLFDRVFTSKSDVWSFGILLWEIFTLGGTPYPGIPPTEELLEFLKEGNRMEQPEHCSDEIYDLMKSCWNADPEDRP  567 (609)
T ss_pred             cCHHHhccCcccccchhhHHHHHHHHHhhCCCCCCCCCCcHHHHHHHHhcCCCCCCCCCCCHHHHHHHHHHhCCCcccCC
Confidence            99999999999999999999999999876 66777663211111112222222333455556666666666655555555


Q ss_pred             C
Q 045449          821 P  821 (823)
Q Consensus       821 p  821 (823)
                      .
T Consensus       568 ~  568 (609)
T KOG0200|consen  568 T  568 (609)
T ss_pred             C
Confidence            3

>PLN03150 hypothetical protein; Provisional

Probab=99.70  E-value=5.6e-17  Score=189.12  Aligned_cols=156  Identities=28%  Similarity=0.458  Sum_probs=131.4

Q ss_pred             chHHHHHHHHHHHHhccCCCccccccccCCCCCCc----cceeeeeCC--CC--CcEEEEEcCCCCCccccCcccCCCCC
Q 045449            6 IISQHQQALLALKAHISYDHTNLFARNWTSSTSVC----IWIGITCDV--NS--HRVIGLNISSFNLQGTITPQLGNLSS   77 (823)
Q Consensus         6 ~~~~~~~aLl~~k~~~~~~~~~~~~~~W~~~~~~c----~w~gv~c~~--~~--~~v~~L~L~~~~l~g~~~~~l~~l~~   77 (823)
                      ..++|.+||++||+++. ++..  . +|.. ..||    .|.||.|+.  .+  ..|+.|+|++|++.|.+|+.++++++
T Consensus       369 t~~~~~~aL~~~k~~~~-~~~~--~-~W~g-~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~~i~~L~~  443 (623)
T PLN03150        369 TLLEEVSALQTLKSSLG-LPLR--F-GWNG-DPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRH  443 (623)
T ss_pred             cCchHHHHHHHHHHhcC-Cccc--C-CCCC-CCCCCcccccccceeeccCCCCceEEEEEECCCCCccccCCHHHhCCCC
Confidence            35678999999999974 3322  3 7963 3343    799999953  22  25999999999999999999999999


Q ss_pred             CcEEEccCCCCCCCCCCCCCCCCCCCEEECCCCcCcCCCchhhhcCCCCcEEecccccccCccCccccCCCCCCcccccc
Q 045449           78 LQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQLFGSLSSFIFNMSSMTTIDLSINRLSGELPANICKIPSTLSKCKQL  157 (823)
Q Consensus        78 L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~p~~~~~l~~L  157 (823)
                      |++|+|++|+|+|.+|..++.+++|++|||++|+|+|.+|+.++++++|++|+|++|+++|.+|..+.      ..+.++
T Consensus       444 L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~------~~~~~~  517 (623)
T PLN03150        444 LQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALG------GRLLHR  517 (623)
T ss_pred             CCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHh------hccccC
Confidence            99999999999999999999999999999999999999999999999999999999999999998772      123467


Q ss_pred             ceeeeccceeeccCc
Q 045449          158 EELNLGFNNLSGAIP  172 (823)
Q Consensus       158 ~~L~Ls~N~l~~~~p  172 (823)
                      ..+++.+|......|
T Consensus       518 ~~l~~~~N~~lc~~p  532 (623)
T PLN03150        518 ASFNFTDNAGLCGIP  532 (623)
T ss_pred             ceEEecCCccccCCC
Confidence            788999887544333

>KOG0670 consensus U4/U6-associated splicing factor PRP4 [RNA processing and modification]

Probab=99.68  E-value=4.2e-17  Score=171.87  Aligned_cols=159  Identities=25%  Similarity=0.281  Sum_probs=122.5

Q ss_pred             ccccccCHHHHHHHhccCCccceeeccC------------CeEEEEEEehHhhHHHHHHHHHHHHHHhhcc------hhh
Q 045449          613 QAIRRFSYHELLRATDRFSENNLIGIGN------------GMEVAVKVFHQQYERALKSFEDECEVRKRIR------HRN  674 (823)
Q Consensus       613 ~~~~~~~~~~l~~at~~f~~~~~lg~g~------------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~------h~n  674 (823)
                      ++..++.+.|++.  .+|.+....|.|-            |..||||+++... ...+.=.+|+++|++|.      .-|
T Consensus       419 EGYYrv~igE~LD--~RY~V~~~~GkGvFs~Vvra~D~~r~~~vAiKIIRnNE-~M~KtGl~EleiLkKL~~AD~Edk~H  495 (752)
T KOG0670|consen  419 EGYYRVRIGELLD--SRYEVQGYTGKGVFSTVVRARDQARGQEVAIKIIRNNE-VMHKTGLKELEILKKLNDADPEDKFH  495 (752)
T ss_pred             cceEEEehhhhhc--ceeEEEeccccceeeeeeeccccCCCCeeEEEEeecch-HHhhhhhHHHHHHHHhhccCchhhhH
Confidence            4556677777764  4666666666662            6789999997653 23344567888887773      224


Q ss_pred             HHH------------------------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCC-Cc
Q 045449          675 LVK------------------------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDED-MV  711 (823)
Q Consensus       675 iv~------------------------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~-~~  711 (823)
                      +++                                          +..|+.-+|.++-..+|+|.||||.|||+.+. ..
T Consensus       496 clrl~r~F~hknHLClVFE~LslNLRevLKKyG~nvGL~ikaVRsYaqQLflALklLK~c~vlHaDIKPDNiLVNE~k~i  575 (752)
T KOG0670|consen  496 CLRLFRHFKHKNHLCLVFEPLSLNLREVLKKYGRNVGLHIKAVRSYAQQLFLALKLLKKCGVLHADIKPDNILVNESKNI  575 (752)
T ss_pred             HHHHHHHhhhcceeEEEehhhhchHHHHHHHhCcccceeehHHHHHHHHHHHHHHHHHhcCeeecccCccceEeccCcce
Confidence            444                                          24578888999999999999999999999854 68


Q ss_pred             EEEeecccccccCCCCccccccccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCC
Q 045449          712 AHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       712 ~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      .||||||.|......+    .+....+..|.|||++.+-+|+...|+||.||.+||+-||+..|.+-
T Consensus       576 LKLCDfGSA~~~~ene----itPYLVSRFYRaPEIiLG~~yd~~iD~WSvgctLYElYtGkIlFpG~  638 (752)
T KOG0670|consen  576 LKLCDFGSASFASENE----ITPYLVSRFYRAPEIILGLPYDYPIDTWSVGCTLYELYTGKILFPGR  638 (752)
T ss_pred             eeeccCcccccccccc----ccHHHHHHhccCcceeecCcccCCccceeeceeeEEeeccceecCCC
Confidence            9999999998765432    23455678899999999999999999999999999999999887664

>KOG1345 consensus Serine/threonine kinase [Signal transduction mechanisms]

Probab=99.68  E-value=2.3e-17  Score=160.82  Aligned_cols=132  Identities=21%  Similarity=0.298  Sum_probs=103.6

Q ss_pred             CCeEEEEEEehHhhHHHHHHHHHHHHHHhhc-chhhHHH----------------------------------------H
Q 045449          640 NGMEVAVKVFHQQYERALKSFEDECEVRKRI-RHRNLVK----------------------------------------I  678 (823)
Q Consensus       640 ~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~----------------------------------------~  678 (823)
                      ..+.+|+|.+..... ..++|.+|...--.+ .|.||+.                                        +
T Consensus        48 s~t~ivlKavp~p~t-t~~dF~rEfhY~~~Ls~H~hIi~tY~vaFqt~d~YvF~qE~aP~gdL~snv~~~GigE~~~K~v  126 (378)
T KOG1345|consen   48 SKTRIVLKAVPRPQT-TQADFVREFHYSFFLSPHQHIIDTYEVAFQTSDAYVFVQEFAPRGDLRSNVEAAGIGEANTKKV  126 (378)
T ss_pred             CceEEEeeccCcchh-hHHHHHHHhccceeeccchhhhHHHHHHhhcCceEEEeeccCccchhhhhcCcccccHHHHHHH
Confidence            367799999876643 347899999876666 6899997                                        4


Q ss_pred             HHHHHHHhhhcCCCCEEeccCCCCCEEeC--CCCcEEEeecccccccCCCCccccccccccCCCcCcccccCC---Cc--
Q 045449          679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLD--EDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTK---GR--  751 (823)
Q Consensus       679 ~~~~l~~L~~~h~~~ivHrdlk~~NiLl~--~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~---~~--  751 (823)
                      ++|++.++.|+|+..+||||||.+|||+-  +..++||||||..+.....     ....--+..|-|||+...   +.  
T Consensus       127 ~~ql~SAi~fMHsknlVHRdlK~eNiLif~~df~rvKlcDFG~t~k~g~t-----V~~~~~~~~y~~pe~~~~~~ne~~~  201 (378)
T KOG1345|consen  127 FAQLLSAIEFMHSKNLVHRDLKAENILIFDADFYRVKLCDFGLTRKVGTT-----VKYLEYVNNYHAPELCDTVVNEKLV  201 (378)
T ss_pred             HHHHHHHHHHhhccchhhcccccceEEEecCCccEEEeeecccccccCce-----ehhhhhhcccCCcHHHhhccccceE
Confidence            68999999999999999999999999993  3459999999998764321     111223567899996532   33  


Q ss_pred             cccccceehhhhhhccccCCCCCcCC
Q 045449          752 VSTRGDVCSFGIISGGKETRSMTVGE  777 (823)
Q Consensus       752 ~~~~~Dv~S~Gvv~~~~~~~~~~~~~  777 (823)
                      ..+.+|||.||++++..++|..||+.
T Consensus       202 ~~ps~D~WqfGIi~f~cltG~~PWQk  227 (378)
T KOG1345|consen  202 VNPSTDIWQFGIIFFYCLTGKFPWQK  227 (378)
T ss_pred             ecccccchheeeeeeeeecCCCcchh
Confidence            46778999999999999999999984

>smart00220 S_TKc Serine/Threonine protein kinases, catalytic domain

Probab=99.67  E-value=5.3e-17  Score=167.80  Aligned_cols=136  Identities=33%  Similarity=0.405  Sum_probs=116.0

Q ss_pred             cCCeEEEEEEehHhhHHH-HHHHHHHHHHHhhcchhhHHHH---------------------------------------
Q 045449          639 GNGMEVAVKVFHQQYERA-LKSFEDECEVRKRIRHRNLVKI---------------------------------------  678 (823)
Q Consensus       639 g~~~~vavK~~~~~~~~~-~~~~~~E~~~l~~l~h~niv~~---------------------------------------  678 (823)
                      +.+..||+|++....... .+.+.+|++.+++++|+|++++                                       
T Consensus        12 ~~~~~~~~k~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~l~~e~~~~~~L~~~~~~~~~~~~~~~~~   91 (244)
T smart00220       12 KTGKLVAIKVIKKEKIKKKRERILREISILKKLKHPNIVRLYDVFEDEDKLYLVMEYCDGGDLFDLLKKRGRLSEDEARF   91 (244)
T ss_pred             CCCcEEEEEEecccccccHHHHHHHHHHHHHhCCCCcHHHHHhheeeCCEEEEEEeCCCCCCHHHHHHhccCCCHHHHHH
Confidence            346889999997654433 6889999999999999999982                                       


Q ss_pred             -HHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccCCCccccccc
Q 045449          679 -ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGD  757 (823)
Q Consensus       679 -~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~D  757 (823)
                       +.+++.+++++|+.+++|+|++|+||+++.++.++++|||.+.......   ......++..|+|||...+..++.++|
T Consensus        92 ~~~~l~~~l~~lh~~~i~h~~i~~~ni~~~~~~~~~l~d~~~~~~~~~~~---~~~~~~~~~~~~~pE~~~~~~~~~~~D  168 (244)
T smart00220       92 YARQILSALEYLHSNGIIHRDLKPENILLDEDGHVKLADFGLARQLDPGG---LLTTFVGTPEYMAPEVLLGKGYGKAVD  168 (244)
T ss_pred             HHHHHHHHHHHHHHcCeecCCcCHHHeEECCCCcEEEccccceeeecccc---ccccccCCcCCCCHHHHccCCCCchhh
Confidence             4567788899999999999999999999999999999999998765432   223456889999999998888899999


Q ss_pred             eehhhhhhccccCCCCCcCC
Q 045449          758 VCSFGIISGGKETRSMTVGE  777 (823)
Q Consensus       758 v~S~Gvv~~~~~~~~~~~~~  777 (823)
                      |||+|++++++.++..|+..
T Consensus       169 i~slG~~l~~l~~~~~p~~~  188 (244)
T smart00220      169 VWSLGVILYELLTGKPPFPG  188 (244)
T ss_pred             HHHHHHHHHHHHhCCCCCCC
Confidence            99999999999999988865

Phosphotransferases. Serine or threonine-specific kinase subfamily.

>PLN03224 probable serine/threonine protein kinase; Provisional

Probab=99.67  E-value=1.3e-16  Score=179.35  Aligned_cols=97  Identities=24%  Similarity=0.235  Sum_probs=75.1

Q ss_pred             HHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccCCCc-------
Q 045449          679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGR-------  751 (823)
Q Consensus       679 ~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~-------  751 (823)
                      +.|++++|+|+|+.+|+||||||+||+++.++.+||+|||+++........ ......+|+.|+|||.+....       
T Consensus       315 ~~ql~~aL~~lH~~~ivHrDLKp~NILl~~~~~~kL~DFGla~~~~~~~~~-~~~~g~~tp~Y~aPE~l~~~~~~~~~~~  393 (507)
T PLN03224        315 MRQVLTGLRKLHRIGIVHRDIKPENLLVTVDGQVKIIDFGAAVDMCTGINF-NPLYGMLDPRYSPPEELVMPQSCPRAPA  393 (507)
T ss_pred             HHHHHHHHHHHHHCCeecCCCchHhEEECCCCcEEEEeCcCccccccCCcc-CccccCCCcceeChhhhcCCCCCCccch
Confidence            457788999999999999999999999999999999999999765432221 112234589999999875322       


Q ss_pred             -------------cc--cccceehhhhhhccccCCCC-CcC
Q 045449          752 -------------VS--TRGDVCSFGIISGGKETRSM-TVG  776 (823)
Q Consensus       752 -------------~~--~~~Dv~S~Gvv~~~~~~~~~-~~~  776 (823)
                                   |+  .+.||||+||++++|.++.. |+.
T Consensus       394 ~~~~~~l~~~~~~yg~~~~~DvwSlGvil~em~~~~l~p~~  434 (507)
T PLN03224        394 PAMAALLSPFAWLYGRPDLFDSYTAGVLLMQMCVPELRPVA  434 (507)
T ss_pred             hhhhhhhhhhHHhcCCCCccchhhHHHHHHHHHhCCCCCcc
Confidence                         22  34799999999999999875 554

>smart00221 STYKc Protein kinase; unclassified specificity

Probab=99.64  E-value=3e-16  Score=160.42  Aligned_cols=136  Identities=30%  Similarity=0.413  Sum_probs=114.1

Q ss_pred             CeEEEEEEehHhhHH-HHHHHHHHHHHHhhcchhhHHHH-----------------------------------------
Q 045449          641 GMEVAVKVFHQQYER-ALKSFEDECEVRKRIRHRNLVKI-----------------------------------------  678 (823)
Q Consensus       641 ~~~vavK~~~~~~~~-~~~~~~~E~~~l~~l~h~niv~~-----------------------------------------  678 (823)
                      +..+|+|.+...... ..+.+.+|++.+.+++|+|++++                                         
T Consensus        24 ~~~~~iK~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~  103 (225)
T smart00221       24 GELVAVKVLKKEKTEKQREEFLREIRILKKLKHPNIVKLYGVFEDPEPLYLVMEYCEGGDLFDYLRKKGGKLSEEEARFY  103 (225)
T ss_pred             CcEEEEEeeccccchHHHHHHHHHHHHHHhCCCCChhhheeeeecCCceEEEEeccCCCCHHHHHHhcccCCCHHHHHHH
Confidence            578999999866544 56789999999999999999982                                         


Q ss_pred             HHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCccccc-CCCccccccc
Q 045449          679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYG-TKGRVSTRGD  757 (823)
Q Consensus       679 ~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~-~~~~~~~~~D  757 (823)
                      +.+++.+++++|+.+++|+|++|+||+++.++.++++|||.+........ .......++..|++||.. ....++.++|
T Consensus       104 ~~~l~~~l~~lh~~~i~h~di~~~ni~v~~~~~~~l~d~g~~~~~~~~~~-~~~~~~~~~~~~~~pe~~~~~~~~~~~~D  182 (225)
T smart00221      104 LRQILEALEYLHSLGIVHRDLKPENILLGMDGLVKLADFGLARFIHRDLA-ALLKTVKGTPFYLAPEVLLGGKGYGEAVD  182 (225)
T ss_pred             HHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCCEEEeeCceeeEecCccc-ccccceeccCCcCCHhHhcCCCCCCchhh
Confidence            35677888999999999999999999999999999999999987654321 012335678899999998 6667788999


Q ss_pred             eehhhhhhccccCCCCCcCC
Q 045449          758 VCSFGIISGGKETRSMTVGE  777 (823)
Q Consensus       758 v~S~Gvv~~~~~~~~~~~~~  777 (823)
                      ||+||++++++.+|+.||..
T Consensus       183 v~~lG~~~~~l~~g~~pf~~  202 (225)
T smart00221      183 IWSLGVILYELLWGPEPFSG  202 (225)
T ss_pred             HHHHHHHHHHHHHCCCCccc
Confidence            99999999999999999965

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase.

>KOG1024 consensus Receptor-like protein tyrosine kinase RYK/derailed [Signal transduction mechanisms]

Probab=99.64  E-value=6.2e-17  Score=165.20  Aligned_cols=164  Identities=16%  Similarity=0.114  Sum_probs=120.9

Q ss_pred             HHHHHHHHHHHHhhcchhhHHH-------------------------------------------------HHHHHHHHh
Q 045449          656 ALKSFEDECEVRKRIRHRNLVK-------------------------------------------------IISSSLEYL  686 (823)
Q Consensus       656 ~~~~~~~E~~~l~~l~h~niv~-------------------------------------------------~~~~~l~~L  686 (823)
                      ....|..|...+..+.|||+..                                                 +..|+..++
T Consensus       330 Qv~~~L~es~lly~~sH~nll~V~~V~ie~~~~P~V~y~~~~~gNLK~FL~~Cr~~~~~~aqtvtt~qlV~masQla~am  409 (563)
T KOG1024|consen  330 QVNLLLQESMLLYGASHPNLLSVLGVSIEDYATPFVLYPATGVGNLKSFLQICRGDDPSYAQTVTTIQLVLMASQLAMAM  409 (563)
T ss_pred             HHHHHHHHHHHHhcCcCCCccceeEEEeeccCcceEEEeccCcchHHHHHHHhccCCCccccchhHHHHHHHHHHHHHHH
Confidence            3456888999999999999998                                                 245778899


Q ss_pred             hhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccCCCccccccceehhhhhhc
Q 045449          687 HFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISG  766 (823)
Q Consensus       687 ~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~  766 (823)
                      .|+|+.+|||.||-..|.++|+...+|++|=.++|.+.+.+........-....||+||.+....|+..+|||||||++|
T Consensus       410 ~hlh~~~ViHkDiAaRNCvIdd~LqVkltDsaLSRDLFP~DYhcLGDnEnRPvkWMslEal~n~~yssasDvWsfGVllW  489 (563)
T KOG1024|consen  410 EHLHNHGVIHKDIAARNCVIDDQLQVKLTDSALSRDLFPGDYHCLGDNENRPVKWMSLEALQNSHYSSASDVWSFGVLLW  489 (563)
T ss_pred             HHHHhcCcccchhhhhcceehhheeEEeccchhccccCcccccccCCCCCCcccccCHHHHhhhhhcchhhhHHHHHHHH
Confidence            99999999999999999999999999999999999887766543333334567899999999999999999999999999


Q ss_pred             cccC-CCCCcCCCcccccccccccCCcccccccCCCcccccccccccccccccCC
Q 045449          767 GKET-RSMTVGETCTPVRESKYEVHPATTTIMEHPLPRVGEVMDVDRGKARIQGK  820 (823)
Q Consensus       767 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  820 (823)
                      |+++ |+.|+.++.-... .-|-.+...-.-+-.++.+.-++|..+....+-+||
T Consensus       490 ELmtlg~~PyaeIDPfEm-~~ylkdGyRlaQP~NCPDeLf~vMacCWallpeeRP  543 (563)
T KOG1024|consen  490 ELMTLGKLPYAEIDPFEM-EHYLKDGYRLAQPFNCPDELFTVMACCWALLPEERP  543 (563)
T ss_pred             HHHhcCCCCccccCHHHH-HHHHhccceecCCCCCcHHHHHHHHHHHhcCcccCC
Confidence            9987 7788877532211 112122221222233444555555555555544444

>KOG1167 consensus Serine/threonine protein kinase of the CDC7 subfamily involved in DNA synthesis, repair and recombination [Replication, recombination and repair]

Probab=99.62  E-value=6.5e-16  Score=160.54  Aligned_cols=154  Identities=27%  Similarity=0.297  Sum_probs=111.8

Q ss_pred             ccCHHHHHHHhccCCccceeeccCCeEEEEEEehHhhHHHHHHHHHHHHHHhhc-chhhHHH------------------
Q 045449          617 RFSYHELLRATDRFSENNLIGIGNGMEVAVKVFHQQYERALKSFEDECEVRKRI-RHRNLVK------------------  677 (823)
Q Consensus       617 ~~~~~~l~~at~~f~~~~~lg~g~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~------------------  677 (823)
                      ..++.-+..|+..=+      .+....||+|.+.....  ..+...|++.+.++ .+.||++                  
T Consensus        46 eGsFssv~~a~~~~~------~~~~~~valk~i~~ts~--p~ri~~El~~L~~~gG~~ni~~~~~~~rnnd~v~ivlp~~  117 (418)
T KOG1167|consen   46 EGSFSSVYKATDIEQ------DTKRRYVALKAIYRTSS--PSRILNELEMLYRLGGSDNIIKLNGCFRNNDQVAIVLPYF  117 (418)
T ss_pred             ccchhhhhhhhHhhh------ccccceEeeeecccccC--chHHHHHHHHHHHhccchhhhcchhhhccCCeeEEEeccc
Confidence            444555555543221      22357799998865532  24688899999988 5778887                  


Q ss_pred             -------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCC-CcEEEeecccccccCCCC----------
Q 045449          678 -------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDED-MVAHISDFGIAKLLSGED----------  727 (823)
Q Consensus       678 -------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~-~~~kl~DfGla~~~~~~~----------  727 (823)
                                         ++...+.+|.++|..|||||||||+|+|.+.. +.-.|+|||+|.......          
T Consensus       118 ~H~~f~~l~~~l~~~~i~~Yl~~ll~Al~~~h~~GIvHRDiKpsNFL~n~~t~rg~LvDFgLA~~~d~~~~~~~s~~~~~  197 (418)
T KOG1167|consen  118 EHDRFRDLYRSLSLAEIRWYLRNLLKALAHLHKNGIVHRDIKPSNFLYNRRTQRGVLVDFGLAQRYDGYQQTEHSRSYSG  197 (418)
T ss_pred             CccCHHHHHhcCCHHHHHHHHHHHHHHhhhhhccCccccCCCccccccccccCCceEEechhHHHHHhhhhhhhhhhhhc
Confidence                               34567788889999999999999999999854 678899999998311000          


Q ss_pred             --------------------------------ccccccccccCCCcCcccccCCC-ccccccceehhhhhhccccCCCCC
Q 045449          728 --------------------------------QLSKQTQTLATIGYMAPEYGTKG-RVSTRGDVCSFGIISGGKETRSMT  774 (823)
Q Consensus       728 --------------------------------~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~S~Gvv~~~~~~~~~~  774 (823)
                                                      ........+||+||+|||++.+. ..++++||||.|||+.-++++..|
T Consensus       198 ~~~~~~~g~~~~~~~~~~~~~p~g~~~~~~~~r~~~~anrAGT~GfRaPEvL~k~~~QttaiDiws~GVI~Lslls~~~P  277 (418)
T KOG1167|consen  198 RHATPAMGKDVHCQSVATASKPAGYYRRCNDGRPSERANRAGTPGFRAPEVLFRCPRQTTAIDIWSAGVILLSLLSRRYP  277 (418)
T ss_pred             ccCCccccCcccccccccccCCCCceeccCCCccceecccCCCCCCCchHHHhhccCcCCccceeeccceeehhhccccc
Confidence                                            00011235799999999988764 468899999999998888888888


Q ss_pred             cCCC
Q 045449          775 VGET  778 (823)
Q Consensus       775 ~~~~  778 (823)
                      |...
T Consensus       278 Ff~a  281 (418)
T KOG1167|consen  278 FFKA  281 (418)
T ss_pred             cccC
Confidence            7543

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.62  E-value=1.9e-16  Score=191.97  Aligned_cols=108  Identities=16%  Similarity=0.188  Sum_probs=84.3

Q ss_pred             cchhhHHHHHHHHHHHhhhcCCCCEEeccCCCCCEEeCC-------------------CCcEEEeecccccccCCCCc--
Q 045449          670 IRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDE-------------------DMVAHISDFGIAKLLSGEDQ--  728 (823)
Q Consensus       670 l~h~niv~~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~-------------------~~~~kl~DfGla~~~~~~~~--  728 (823)
                      +....+..++.|++++|+|+|++||+||||||+|||++.                   ++.+|++|||+++.......  
T Consensus        77 ~~~~~~~~i~~qi~~al~~lH~~gIvHrDlKP~NiLl~~~~~~k~~d~~~~~~~~~~~~~~~ki~DfG~a~~~~~~~~~~  156 (793)
T PLN00181         77 VDAFECFHVFRQIVEIVNAAHSQGIVVHNVRPSCFVMSSFNHVSFIESASCSDSGSDEDATTKSREIGSSRREEILSERR  156 (793)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHhCCeeeccCCchhEEEcccCcEEEeeccccCcccccccCcccccccccccccccccccc
Confidence            455667788999999999999999999999999999954                   45567777777764321000  


Q ss_pred             ------------cccccccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCC
Q 045449          729 ------------LSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGE  777 (823)
Q Consensus       729 ------------~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~  777 (823)
                                  .......+||+.|||||++.+..|+.++|||||||++||++++..|+..
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~~~~~~~~~~sDVwSlGviL~ELl~~~~~~~~  217 (793)
T PLN00181        157 IEKLEEVKKQPFPMKQILAMEMSWYTSPEEDNGSSSNCASDVYRLGVLLFELFCPVSSREE  217 (793)
T ss_pred             hhhhhccccCCCcccccccCCCcceEChhhhccCCCCchhhhhhHHHHHHHHhhCCCchhh
Confidence                        0001124689999999999999999999999999999999998877653

>PLN03150 hypothetical protein; Provisional

Probab=99.61  E-value=1.5e-15  Score=177.28  Aligned_cols=120  Identities=24%  Similarity=0.467  Sum_probs=101.2

Q ss_pred             CCCEEEcccCcCcccccccccCCCCCCeEeccCCccccccchhhhccCCCcEEeccccccccccCccccCCCCCcEEEcc
Q 045449          428 RLHSLVLQGNKFSGSIPSCLGNLTSVRVLYLGLNIFTSVLSSTIWNLKDILFIDVSSNFLDGPLSLDIGNLKVVIGLDFS  507 (823)
Q Consensus       428 ~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~ls  507 (823)
                      .++.|+|++|.++|.+|..+..+++|+.|+|++|.++|.+|..++.+++|+.|||++|+++|.+|..+++++.|+.|+|+
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            36788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCCcccCccCCCCCCCCCCCcccccCCcccCCCCCCCCCCCC
Q 045449          508 RNNLSGDIPITIGEGEIPRGGPFANLTAKSFMGNELLCGLPDLQVSPCK  556 (823)
Q Consensus       508 ~N~l~g~ip~~~~~g~ip~~~~~~~~~~~~~~~n~~~c~~~~~~~~~c~  556 (823)
                      +|+|+|.+|..++..       +......++.+|+.+|+.|..  .+|.
T Consensus       499 ~N~l~g~iP~~l~~~-------~~~~~~l~~~~N~~lc~~p~l--~~C~  538 (623)
T PLN03150        499 GNSLSGRVPAALGGR-------LLHRASFNFTDNAGLCGIPGL--RACG  538 (623)
T ss_pred             CCcccccCChHHhhc-------cccCceEEecCCccccCCCCC--CCCc
Confidence            999998888877421       123345678999999997753  3564

>PRK09188 serine/threonine protein kinase; Provisional

Probab=99.59  E-value=2.1e-15  Score=162.44  Aligned_cols=126  Identities=25%  Similarity=0.229  Sum_probs=99.0

Q ss_pred             HHhccCCccceeeccC-------------CeEEEEEEehHh-----hHHHHHHHHHHHHHHhhcchhhHHH---------
Q 045449          625 RATDRFSENNLIGIGN-------------GMEVAVKVFHQQ-----YERALKSFEDECEVRKRIRHRNLVK---------  677 (823)
Q Consensus       625 ~at~~f~~~~~lg~g~-------------~~~vavK~~~~~-----~~~~~~~~~~E~~~l~~l~h~niv~---------  677 (823)
                      ...++|...+.||+|+             ++.||||++...     .....+.|.+|++++++++|+|++.         
T Consensus        15 ~~~~~Y~~~~~IG~G~fg~Vy~a~~~~~~~~~vAiK~~~~~~~~~~~~~~~~~~~~E~~iL~~L~h~~iv~~l~~~~~~~   94 (365)
T PRK09188         15 ALSARFVETAVLKRDVFSTVERGYFAGDPGTARAVRRRVSEVPWWSKPLARHLAAREIRALKTVRGIGVVPQLLATGKDG   94 (365)
T ss_pred             cccCCceEccEEeecCcEEEEEEEEcCCCCeEEEEEEecccccccccHHHHHHHHHHHHHHHhccCCCCCcEEEEcCCcE
Confidence            3456788888899886             455799986532     2334567999999999999999984         


Q ss_pred             ---------------------HHHHHHHHhhhcCCCCEEeccC-CCCCEEeCCCCcEEEeecccccccCCCCcccc----
Q 045449          678 ---------------------IISSSLEYLHFGHSIPIIHCDL-KPSNVLLDEDMVAHISDFGIAKLLSGEDQLSK----  731 (823)
Q Consensus       678 ---------------------~~~~~l~~L~~~h~~~ivHrdl-k~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~----  731 (823)
                                           ++.+++++|.|+|+.||+|||| ||+|||++.++.+||+|||+|+..........    
T Consensus        95 LVmE~~~G~~L~~~~~~~~~~~~~~i~~aL~~lH~~gIiHrDL~KP~NILv~~~~~ikLiDFGlA~~~~~~~~~~~~~~~  174 (365)
T PRK09188         95 LVRGWTEGVPLHLARPHGDPAWFRSAHRALRDLHRAGITHNDLAKPQNWLMGPDGEAAVIDFQLASVFRRRGALYRIAAY  174 (365)
T ss_pred             EEEEccCCCCHHHhCccchHHHHHHHHHHHHHHHHCCCeeCCCCCcceEEEcCCCCEEEEECccceecccCcchhhhhhh
Confidence                                 3567889999999999999999 99999999999999999999997654332111    


Q ss_pred             --ccccccCCCcCcccccCCC
Q 045449          732 --QTQTLATIGYMAPEYGTKG  750 (823)
Q Consensus       732 --~~~~~gt~~y~aPE~~~~~  750 (823)
                        .+...+++.|+|||++...
T Consensus       175 ~d~~~~~~~~~~~~pe~~~~~  195 (365)
T PRK09188        175 EDLRHLLKHKRTYAPDALTPR  195 (365)
T ss_pred             hhhhhhhccCccCCcccCChh
Confidence              1356788999999987654

>KOG0576 consensus Mitogen-activated protein kinase kinase kinase kinase (MAP4K), germinal center kinase family [Signal transduction mechanisms]

Probab=99.55  E-value=7.1e-16  Score=167.52  Aligned_cols=145  Identities=28%  Similarity=0.413  Sum_probs=116.1

Q ss_pred             ccccccCHHHHHHHhccCCccceeeccCCeEEEEEEehHhhHHHHHHHHHHHHHHhhcchhhHHHHH-------------
Q 045449          613 QAIRRFSYHELLRATDRFSENNLIGIGNGMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVKII-------------  679 (823)
Q Consensus       613 ~~~~~~~~~~l~~at~~f~~~~~lg~g~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~-------------  679 (823)
                      +-....||.|+.+|-+.-+         +..+|||+++........-..+|+-+++..+|||||.++             
T Consensus        21 qrvgsgTygdvyKaRd~~s---------~elaavkvVkLep~dd~~~iqqei~~~~dc~h~nivay~gsylr~dklwicM   91 (829)
T KOG0576|consen   21 QRVGSGTYGDVYKARDKRS---------GELAAVKVVKLEPGDDFSGIQQEIGMLRDCRHPNIVAYFGSYLRRDKLWICM   91 (829)
T ss_pred             eeecCCcccchhhhccccc---------CchhhheeeeccCCccccccccceeeeecCCCcChHHHHhhhhhhcCcEEEE
Confidence            3345577888888754322         577899999877655556778899999999999999842             


Q ss_pred             ---------------------------HHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccc
Q 045449          680 ---------------------------SSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQ  732 (823)
Q Consensus       680 ---------------------------~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~  732 (823)
                                                 ...+..|+|+|+.|-+|||||-.||++++.+.+|++|||.+..+..  ...+.
T Consensus        92 EycgggslQdiy~~TgplselqiayvcRetl~gl~ylhs~gk~hRdiKGanilltd~gDvklaDfgvsaqita--ti~Kr  169 (829)
T KOG0576|consen   92 EYCGGGSLQDIYHVTGPLSELQIAYVCRETLQGLKYLHSQGKIHRDIKGANILLTDEGDVKLADFGVSAQITA--TIAKR  169 (829)
T ss_pred             EecCCCcccceeeecccchhHHHHHHHhhhhccchhhhcCCcccccccccceeecccCceeecccCchhhhhh--hhhhh
Confidence                                       3456789999999999999999999999999999999999877643  23345


Q ss_pred             cccccCCCcCccccc---CCCccccccceehhhhhhccc
Q 045449          733 TQTLATIGYMAPEYG---TKGRVSTRGDVCSFGIISGGK  768 (823)
Q Consensus       733 ~~~~gt~~y~aPE~~---~~~~~~~~~Dv~S~Gvv~~~~  768 (823)
                      ..++||+.|||||+.   ..+.|..++|||+.|+..-|+
T Consensus       170 ksfiGtpywmapEvaaverkggynqlcdiwa~gitAiel  208 (829)
T KOG0576|consen  170 KSFIGTPYWMAPEVAAVERKGGYNQLCDIWALGITAIEL  208 (829)
T ss_pred             hcccCCccccchhHHHHHhcccccccccccccccchhhh
Confidence            678999999999975   456799999999999874443

>smart00750 KIND kinase non-catalytic C-lobe domain

Probab=99.54  E-value=4.2e-15  Score=146.06  Aligned_cols=94  Identities=21%  Similarity=0.216  Sum_probs=82.5

Q ss_pred             cchhhHHHHHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccCC
Q 045449          670 IRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTK  749 (823)
Q Consensus       670 l~h~niv~~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~  749 (823)
                      +.-+.+..++.|++.+|+|+|+.+      ||+||+++.++.+|+  ||+++.....       ...||+.|||||++.+
T Consensus        14 l~~~~~~~i~~qi~~~L~~lH~~~------kp~Nil~~~~~~~~~--fG~~~~~~~~-------~~~g~~~y~aPE~~~~   78 (176)
T smart00750       14 LNEEEIWAVCLQCLRALRELHRQA------KSGNILLTWDGLLKL--DGSVAFKTPE-------QSRVDPYFMAPEVIQG   78 (176)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhcC------CcccEeEcCccceee--ccceEeeccc-------cCCCcccccChHHhcC
Confidence            566677888999999999999887      999999999999999  9999875432       1258999999999999


Q ss_pred             CccccccceehhhhhhccccCCCCCcCCC
Q 045449          750 GRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       750 ~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      ..|+.++|||||||++|++++|+.||...
T Consensus        79 ~~~~~~~DiwSlG~il~elltg~~p~~~~  107 (176)
T smart00750       79 QSYTEKADIYSLGITLYEALDYELPYNEE  107 (176)
T ss_pred             CCCcchhhHHHHHHHHHHHHhCCCCcccc
Confidence            99999999999999999999999998653

It is an interaction domain identified as being similar to the C-terminal protein kinase catalytic fold (C lobe). Its presence at the N terminus of signalling proteins and the absence of the active-site residues in the catalytic and activation loops suggest that it folds independently and is likely to be non-catalytic. The occurrence of KIND only in metazoa implies that it has evolved from the catalytic protein kinase domain into an interaction domain possibly by keeping the substrate-binding features

>cd05610 STKc_MASTL Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase

Probab=99.52  E-value=1.8e-14  Score=170.58  Aligned_cols=135  Identities=23%  Similarity=0.284  Sum_probs=106.8

Q ss_pred             ccCCccceeeccC------------CeEEEEEEehHhh---HHHHHHHHHHHHHHhhcchhhHHH---------------
Q 045449          628 DRFSENNLIGIGN------------GMEVAVKVFHQQY---ERALKSFEDECEVRKRIRHRNLVK---------------  677 (823)
Q Consensus       628 ~~f~~~~~lg~g~------------~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~---------------  677 (823)
                      ++|...+.||.|+            +..||||+++...   ....+.+.+|+.++..++|+||++               
T Consensus         4 ~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiKvi~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~~~lVm   83 (669)
T cd05610           4 EEFVIVKPISRGAFGKVYLGRKKNNSKLYAVKVVKKADMINKNMVHQVQAERDALALSKSPFIVHLYYSLQSANNVYLVM   83 (669)
T ss_pred             CCEEEEEEEecCCCeEEEEEEECCCCcEEEEEEEehhhccCHHHHHHHHHHHHHHHhcCCCCcCeEEEEEEECCEEEEEE
Confidence            4666677788775            5679999997542   344577899999999999999998               


Q ss_pred             -------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccc
Q 045449          678 -------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQ  732 (823)
Q Consensus       678 -------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~  732 (823)
                                               ++.|++.+|+|+|..+|+||||||+|||++.++.+||+|||+++.......  ..
T Consensus        84 Ey~~g~~L~~li~~~~~l~~~~~~~i~~qil~aL~yLH~~gIiHrDLKP~NILl~~~g~vkL~DFGls~~~~~~~~--~~  161 (669)
T cd05610          84 EYLIGGDVKSLLHIYGYFDEEMAVKYISEVALALDYLHRHGIIHRDLKPDNMLISNEGHIKLTDFGLSKVTLNREL--NM  161 (669)
T ss_pred             eCCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCEEeCCccHHHEEEcCCCCEEEEeCCCCccccCCcc--cc
Confidence                                     356888999999999999999999999999999999999999997643322  23


Q ss_pred             cccccCCCcCcccccCCCc-cccccceehhhhh
Q 045449          733 TQTLATIGYMAPEYGTKGR-VSTRGDVCSFGII  764 (823)
Q Consensus       733 ~~~~gt~~y~aPE~~~~~~-~~~~~Dv~S~Gvv  764 (823)
                      ....+|+.|+|||...... ....+++|++|+-
T Consensus       162 ~~~~~t~~~~~pe~~~~~~~~~~~s~~~s~g~~  194 (669)
T cd05610         162 MDILTTPSMAKPKNDYSRTPGQVLSLISSLGFN  194 (669)
T ss_pred             cccccCccccCccccccCCCCceeeeeeecCcC
Confidence            3467899999999654332 3456788999864

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ1481

>KOG1290 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.50  E-value=1.5e-14  Score=152.30  Aligned_cols=43  Identities=23%  Similarity=0.140  Sum_probs=39.3

Q ss_pred             cccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCC
Q 045449          735 TLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGE  777 (823)
Q Consensus       735 ~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~  777 (823)
                      -+.|..|+|||++.+..|++.+|+||++|+++|+.||.+.|+.
T Consensus       411 DIQTRQYRapEVllGsgY~~~ADiWS~AC~~FELaTGDyLFeP  453 (590)
T KOG1290|consen  411 DIQTRQYRAPEVLLGSGYSTSADIWSTACMAFELATGDYLFEP  453 (590)
T ss_pred             hhhhhhccCcceeecCCCCCchhHHHHHHHHHHhhcCceeecC
Confidence            3568899999999999999999999999999999999988753

>KOG1163 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.48  E-value=1.9e-14  Score=138.42  Aligned_cols=192  Identities=20%  Similarity=0.232  Sum_probs=132.1

Q ss_pred             ccCCccceeeccC------------CeEEEEEEehHhhHHHHHHHHHHHHHHhhcch----hhHHH--------------
Q 045449          628 DRFSENNLIGIGN------------GMEVAVKVFHQQYERALKSFEDECEVRKRIRH----RNLVK--------------  677 (823)
Q Consensus       628 ~~f~~~~~lg~g~------------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h----~niv~--------------  677 (823)
                      +.|...+.||.|+            |..||||+-......  .+...|..+.+.++|    |+|-.              
T Consensus        15 gky~lvrkiGsGSFGdIy~~~~i~~ge~VAiK~Es~~a~h--pqL~yEskvY~iL~~g~GiP~i~~y~~e~~ynvlVMdL   92 (341)
T KOG1163|consen   15 GKYKLVRKIGSGSFGDIYLGISITSGEEVAIKLESSKAKH--PQLLYESKVYRILQGGVGIPHIRHYGTEKDYNVLVMDL   92 (341)
T ss_pred             cceEEEEeecCCchhheeeeeeccCCceEEEEeecccCCC--cchhHHHHHHHHhccCCCCchhhhhccccccceeeeec
Confidence            3455555666554            788999986543221  345667777666643    33333              


Q ss_pred             -----------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCC---CcEEEeecccccccCCCCc---
Q 045449          678 -----------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDED---MVAHISDFGIAKLLSGEDQ---  728 (823)
Q Consensus       678 -----------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~---~~~kl~DfGla~~~~~~~~---  728 (823)
                                             ++.|.+.-++|+|.++.+||||||+|.|+.-.   ..+.++|||+|+.+....+   
T Consensus        93 LGPsLEdLfnfC~R~ftmkTvLMLaDQml~RiEyvH~r~fiHRDIKPdNFLMGlgrh~~kl~LIDFGLaKky~d~~t~~H  172 (341)
T KOG1163|consen   93 LGPSLEDLFNFCSRRFTMKTVLMLADQMLSRIEYVHLRNFIHRDIKPDNFLMGLGRHCNKLYLIDFGLAKKYRDIRTRQH  172 (341)
T ss_pred             cCccHHHHHHHHhhhhhHHhHHHHHHHHHHHHHHHHhhccccccCCccceeeccccccceEEEEeccchhhhcccccccc
Confidence                                   35688999999999999999999999999643   4678999999998754322   


Q ss_pred             --cccccccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCCcccccccccccCC------cccccccCC
Q 045449          729 --LSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGETCTPVRESKYEVHP------ATTTIMEHP  800 (823)
Q Consensus       729 --~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~  800 (823)
                        +.......||..|++--...+...+.+.|+=|+|.|+..+--|..||++........+|+...      .+...+...
T Consensus       173 Ipyre~r~ltGTaRYASinAh~g~eqSRRDDmeSvgYvLmYfnrG~LPWQglka~tk~QKyEkI~EkK~s~~ie~LC~G~  252 (341)
T KOG1163|consen  173 IPYREDRNLTGTARYASINAHLGIEQSRRDDMESVGYVLMYFNRGSLPWQGLKAATKKQKYEKISEKKMSTPIEVLCKGF  252 (341)
T ss_pred             CccccCCccceeeeehhhhhhhhhhhhhhhhhhhhcceeeeeecCCCcccccchhhHHHHHHHHHHhhcCCCHHHHhCCC
Confidence              223345679999999888877788999999999999988899999999987665555553322      122333444


Q ss_pred             CcccccccccccccccccCCCC
Q 045449          801 LPRVGEVMDVDRGKARIQGKPI  822 (823)
Q Consensus       801 ~~~~~~~~~~~~~~~~~~~~p~  822 (823)
                      +.++.--+...+.. ++..+|+
T Consensus       253 P~EF~myl~Y~R~L-~F~E~Pd  273 (341)
T KOG1163|consen  253 PAEFAMYLNYCRGL-GFEEKPD  273 (341)
T ss_pred             cHHHHHHHHHHhhc-CCCCCCc
Confidence            44444444555544 4555554

>cd00180 PKc Catalytic domain of Protein Kinases

Probab=99.45  E-value=4.2e-14  Score=142.29  Aligned_cols=126  Identities=37%  Similarity=0.533  Sum_probs=105.0

Q ss_pred             CeEEEEEEehHhhHH-HHHHHHHHHHHHhhcchhhHHH-----------------------------------------H
Q 045449          641 GMEVAVKVFHQQYER-ALKSFEDECEVRKRIRHRNLVK-----------------------------------------I  678 (823)
Q Consensus       641 ~~~vavK~~~~~~~~-~~~~~~~E~~~l~~l~h~niv~-----------------------------------------~  678 (823)
                      +..++||++...... ..+.+.+|++.+++++|+++++                                         +
T Consensus        18 ~~~~~~K~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~~~~~   97 (215)
T cd00180          18 GKKVAIKIIKKEDSSSLLEELLREIEILKKLNHPNIVKLYGVFEDENHLYLVMEYCEGGSLKDLLKENEGKLSEDEILRI   97 (215)
T ss_pred             CcEEEEEEeccccchhHHHHHHHHHHHHHhcCCCCeeeEeeeeecCCeEEEEEecCCCCcHHHHHHhccCCCCHHHHHHH
Confidence            688999999766432 4578999999999999998887                                         2


Q ss_pred             HHHHHHHhhhcCCCCEEeccCCCCCEEeCC-CCcEEEeecccccccCCCCccccccccccCCCcCcccccCCC-cccccc
Q 045449          679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDE-DMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKG-RVSTRG  756 (823)
Q Consensus       679 ~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~-~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~  756 (823)
                      +.+++.+++++|+.+++|+|++|.||+++. ++.++++|||.+........  ......+...|++||..... .++.+.
T Consensus        98 ~~~l~~~l~~lh~~~~~H~dl~~~ni~~~~~~~~~~l~d~~~~~~~~~~~~--~~~~~~~~~~~~~pe~~~~~~~~~~~~  175 (215)
T cd00180          98 LLQILEGLEYLHSNGIIHRDLKPENILLDSDNGKVKLADFGLSKLLTSDKS--LLKTIVGTPAYMAPEVLLGKGYYSEKS  175 (215)
T ss_pred             HHHHHHHHHHHHhCCeeccCCCHhhEEEeCCCCcEEEecCCceEEccCCcc--hhhcccCCCCccChhHhcccCCCCchh
Confidence            457788899999999999999999999998 89999999999987643321  12335578899999998777 788999


Q ss_pred             ceehhhhhhccc
Q 045449          757 DVCSFGIISGGK  768 (823)
Q Consensus       757 Dv~S~Gvv~~~~  768 (823)
                      |+|++|++++++
T Consensus       176 D~~~lg~~~~~l  187 (215)
T cd00180         176 DIWSLGVILYEL  187 (215)
T ss_pred             hhHHHHHHHHHH
Confidence            999999999988

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.40  E-value=1.1e-14  Score=155.83  Aligned_cols=172  Identities=28%  Similarity=0.425  Sum_probs=126.6

Q ss_pred             ceEEEeecCCCCccCCccccccccccceEEecCCcceeccCccccCcccccEEEcccCcCCCCchhcccccCCCCEEEcc
Q 045449          332 LKVLIVTGNPLDGILPKSIGNFSLSLETILMANCSISGNIPQVVGNLSNLLVLELGGNNLTGPIPVTFSQLQTLQAFDLT  411 (823)
Q Consensus       332 L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls  411 (823)
                      -...||+.|++. .+|..+..+ ..|+.+.|..|.+. .+|..++++..|+.|||+.|+++ ..|..+..++ |+.|-++
T Consensus        77 t~~aDlsrNR~~-elp~~~~~f-~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~s  151 (722)
T KOG0532|consen   77 TVFADLSRNRFS-ELPEEACAF-VSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVS  151 (722)
T ss_pred             hhhhhccccccc-cCchHHHHH-HHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEe
Confidence            344566666666 456666666 57777777777776 66777778888888888888887 5666666554 7778888


Q ss_pred             CCCCCCcchHhhhcCCCCCEEEcccCcCcccccccccCCCCCCeEeccCCccccccchhhhccCCCcEEecccccccccc
Q 045449          412 RNKLAGPITDELCHLARLHSLVLQGNKFSGSIPSCLGNLTSVRVLYLGLNIFTSVLSSTIWNLKDILFIDVSSNFLDGPL  491 (823)
Q Consensus       412 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~~  491 (823)
                      +|+++ .+|..++.+..|..||.+.|.+. .+|..++++++|+.|++..|++.. .|..++ .-.|..||+|.|+++ .|
T Consensus       152 NNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~-lp~El~-~LpLi~lDfScNkis-~i  226 (722)
T KOG0532|consen  152 NNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLED-LPEELC-SLPLIRLDFSCNKIS-YL  226 (722)
T ss_pred             cCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhh-CCHHHh-CCceeeeecccCcee-ec
Confidence            88887 66777777777788888888877 667777788888888888888776 455555 345777888888887 67


Q ss_pred             CccccCCCCCcEEEcccCCCCC
Q 045449          492 SLDIGNLKVVIGLDFSRNNLSG  513 (823)
Q Consensus       492 p~~~~~l~~L~~L~ls~N~l~g  513 (823)
                      |.+|..|+.|++|-|.+|.|..
T Consensus       227 Pv~fr~m~~Lq~l~LenNPLqS  248 (722)
T KOG0532|consen  227 PVDFRKMRHLQVLQLENNPLQS  248 (722)
T ss_pred             chhhhhhhhheeeeeccCCCCC
Confidence            8888888888888888888874

>KOG1165 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.40  E-value=2.7e-13  Score=136.49  Aligned_cols=111  Identities=23%  Similarity=0.271  Sum_probs=92.5

Q ss_pred             HHHHHHHhhhcCCCCEEeccCCCCCEEeCCC-----CcEEEeecccccccCCCCc-----cccccccccCCCcCcccccC
Q 045449          679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDED-----MVAHISDFGIAKLLSGEDQ-----LSKQTQTLATIGYMAPEYGT  748 (823)
Q Consensus       679 ~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~-----~~~kl~DfGla~~~~~~~~-----~~~~~~~~gt~~y~aPE~~~  748 (823)
                      +.|++.-++++|++..|.|||||+|.|+...     ..+.++|||+|+.+....+     +.......||.+||+--...
T Consensus       130 A~Qmi~rie~vH~k~LIYRDIKPdNFLIGrp~~k~~n~IhiiDFGmAK~YrDp~TkqHIPYrE~KSLsGTARYMSINTHl  209 (449)
T KOG1165|consen  130 AKQMITRIEYVHEKDLIYRDIKPDNFLIGRPGTKDANVIHIIDFGMAKEYRDPKTKQHIPYREHKSLSGTARYMSINTHL  209 (449)
T ss_pred             HHHHHHHHHHHHhcceeecccCccceeecCCCCCCCceEEEEeccchhhhcCccccccCccccccccccceeeeEeeccc
Confidence            5688889999999999999999999999643     4689999999998865543     22334567999999999999


Q ss_pred             CCccccccceehhhhhhccccCCCCCcCCCccccccccccc
Q 045449          749 KGRVSTRGDVCSFGIISGGKETRSMTVGETCTPVRESKYEV  789 (823)
Q Consensus       749 ~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~~~~~~~~~~~~  789 (823)
                      +.+.+.+.|.=|+|-|+..++-|..||++........+|+.
T Consensus       210 GrEQSRRDDLEaLGHvFmYFLRGsLPWQGLKA~tnK~kYeK  250 (449)
T KOG1165|consen  210 GREQSRRDDLEALGHVFMYFLRGSLPWQGLKADTNKEKYEK  250 (449)
T ss_pred             cchhhhhhhHHHhhhhhhhhccCCCccccccCcchHHHHHH
Confidence            99999999999999999999999999999866555555543

>PRK10359 lipopolysaccharide core biosynthesis protein; Provisional

Probab=99.39  E-value=1.3e-13  Score=138.00  Aligned_cols=131  Identities=15%  Similarity=0.185  Sum_probs=96.3

Q ss_pred             HHHHHH--HhccCCccceeeccC----------CeEEEEEEehHhhH---HHHHH------HHHHHHHHhhcchhhHHH-
Q 045449          620 YHELLR--ATDRFSENNLIGIGN----------GMEVAVKVFHQQYE---RALKS------FEDECEVRKRIRHRNLVK-  677 (823)
Q Consensus       620 ~~~l~~--at~~f~~~~~lg~g~----------~~~vavK~~~~~~~---~~~~~------~~~E~~~l~~l~h~niv~-  677 (823)
                      |.++..  ..++|...+++|.|+          +..+|||+++....   .....      |.+|+..+.++.|++|.. 
T Consensus        21 ~~~~~~~~l~~~y~~~~~l~~~~f~~v~l~~~~~~~~iiKvf~~~~~~~~~~~~~f~~g~~~e~Ea~~l~rL~~~GI~~~  100 (232)
T PRK10359         21 YKEIFDDFLSYNIKTIKVFRNIDDTKVSLIDTDYGKYILKVFAPKVKRTERFLKSFVKGDYYENLIVQTDRVRSEGLASL  100 (232)
T ss_pred             HHHHHHHHhhCceEEEEEecCCCceEEEEEecCCCcEEEEEechhcCchHHHHHhhhhhHHHHHHHHHHHHHHHCCCCcc
Confidence            444433  346788888888665          34599999975542   22223      689999999999998775 


Q ss_pred             ---------------------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecc
Q 045449          678 ---------------------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFG  718 (823)
Q Consensus       678 ---------------------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfG  718 (823)
                                                             ...++++++..+|+.|++|||+||+||+++.++ ++++|||
T Consensus       101 ~d~~~~~~~~~~~~~~~~~lvmEyi~G~tL~~~~~~~~~~~~~i~~~l~~lH~~gi~H~Dikp~Nili~~~g-i~liDfg  179 (232)
T PRK10359        101 NDFYLLAERKTLRYAHTYIMLIEYIEGVELNDMPEISEDVKAKIKASIESLHQHGMVSGDPHKGNFIVSKNG-LRIIDLS  179 (232)
T ss_pred             eEeeeecccccccccCCeEEEEEEECCccHHHhhhccHHHHHHHHHHHHHHHHcCCccCCCChHHEEEeCCC-EEEEECC
Confidence                                                   135778889999999999999999999999888 9999999


Q ss_pred             cccccCCCCccccccccccCCCcCcccccCCCccccccceehhhhhh
Q 045449          719 IAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIIS  765 (823)
Q Consensus       719 la~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~  765 (823)
                      ..+........              ..+.....|+.++|+||+||.+
T Consensus       180 ~~~~~~e~~a~--------------d~~vler~y~~~~di~~lg~~~  212 (232)
T PRK10359        180 GKRCTAQRKAK--------------DRIDLERHYGIKNEIKDLGYYL  212 (232)
T ss_pred             CcccccchhhH--------------HHHHHHhHhcccccccceeEee
Confidence            88754321110              1134445577899999999974

>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]

Probab=99.39  E-value=9.6e-15  Score=159.59  Aligned_cols=134  Identities=26%  Similarity=0.238  Sum_probs=105.8

Q ss_pred             eeccCCeEEEEEEehHhhH--HHHHHHHHHHHHHhhcc-hhhHHH-----------------------------------
Q 045449          636 IGIGNGMEVAVKVFHQQYE--RALKSFEDECEVRKRIR-HRNLVK-----------------------------------  677 (823)
Q Consensus       636 lg~g~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~-h~niv~-----------------------------------  677 (823)
                      -|.-.|..+|+|+.++...  +.......|..++..++ ||.+|+                                   
T Consensus        17 ~g~da~~~yamkvl~k~t~~~~~~~~t~~er~il~~~~~~~f~v~lhyafqt~~kl~l~ld~~rgg~lft~l~~~~~f~~   96 (612)
T KOG0603|consen   17 GGADAGHLYAMKVLKKATLKVRDRTHTKQERIILAFVHNTPFLVKLHYAFQTDGKLYLILDFLRGGDLFTRLSKEVMFDE   96 (612)
T ss_pred             ccccccchhhhhcccccccccccccccccHHHHHhhccCCCceeeeeeeeccccchhHhhhhcccchhhhccccCCchHH
Confidence            3444466677777754331  11124556667777775 777776                                   


Q ss_pred             -----HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccCCCcc
Q 045449          678 -----IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRV  752 (823)
Q Consensus       678 -----~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~  752 (823)
                           +.+..+-++.++|+.+|+|||+|++||+++.+|++|+.|||+++.......      .+||..|||||++.  ..
T Consensus        97 ~~~~~~~aelaLald~lh~l~iiyrd~k~enilld~~Ghi~~tdfglske~v~~~~------~cgt~eymApEI~~--gh  168 (612)
T KOG0603|consen   97 LDVAFYLAELALALDHLHKLGIAYRDYKLENVLLLLEGHIKLTDFGLSKEAVKEKI------ACGTYEYRAPEIIN--GH  168 (612)
T ss_pred             HHHHHHHHHHHHHHhhcchhHHHHhcccccceeecccCccccCCchhhhHhHhhhh------cccchhhhhhHhhh--cc
Confidence                 356777889999999999999999999999999999999999997654322      28999999999987  56


Q ss_pred             ccccceehhhhhhccccCCCCCcCC
Q 045449          753 STRGDVCSFGIISGGKETRSMTVGE  777 (823)
Q Consensus       753 ~~~~Dv~S~Gvv~~~~~~~~~~~~~  777 (823)
                      ...+|.|||||+++++++|..||+.
T Consensus       169 ~~a~D~ws~gvl~felltg~~pf~~  193 (612)
T KOG0603|consen  169 LSAADWWSFGVLAFELLTGTLPFGG  193 (612)
T ss_pred             CCcccchhhhhhHHHHhhCCCCCch
Confidence            7889999999999999999999987

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.38  E-value=2.1e-14  Score=153.73  Aligned_cols=175  Identities=28%  Similarity=0.475  Sum_probs=106.5

Q ss_pred             CCCccEEEeeccccccccCccccCCCCCCeEEeecccccccCCCccCCCcccCcccccCccccCCCCcccccccccCCCC
Q 045449          252 LPNVETLNLGINSFSGTIPSSITNSSKLSDLELGENLFSGFIPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKK  331 (823)
Q Consensus       252 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~l~~  331 (823)
                      +..-...||+.|++. .+|..++.+..|+.+.|.+|.+. .+|..++++..|.+|||+.|+++-.               
T Consensus        74 ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS~l---------------  136 (722)
T KOG0532|consen   74 LTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLSHL---------------  136 (722)
T ss_pred             ccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhhcC---------------
Confidence            444456677777776 56666666666777777777666 5566666666666666666666553               


Q ss_pred             ceEEEeecCCCCccCCccccccccccceEEecCCcceeccCccccCcccccEEEcccCcCCCCchhcccccCCCCEEEcc
Q 045449          332 LKVLIVTGNPLDGILPKSIGNFSLSLETILMANCSISGNIPQVVGNLSNLLVLELGGNNLTGPIPVTFSQLQTLQAFDLT  411 (823)
Q Consensus       332 L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls  411 (823)
                                     |..++.+  -|+.|.+++|+++ .+|..++.+..|..||.+.|++. .+|..++.+.+|+.|.+.
T Consensus       137 ---------------p~~lC~l--pLkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vr  197 (722)
T KOG0532|consen  137 ---------------PDGLCDL--PLKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVR  197 (722)
T ss_pred             ---------------ChhhhcC--cceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHh
Confidence                           3334433  2555555555554 44555555566666666666665 455566666666666666


Q ss_pred             CCCCCCcchHhhhcCCCCCEEEcccCcCcccccccccCCCCCCeEeccCCcccc
Q 045449          412 RNKLAGPITDELCHLARLHSLVLQGNKFSGSIPSCLGNLTSVRVLYLGLNIFTS  465 (823)
Q Consensus       412 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~  465 (823)
                      .|++. .+|..++.|+ |..||+|.|+++ .||-+|.+++.|++|-|.+|.|+.
T Consensus       198 Rn~l~-~lp~El~~Lp-Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLqS  248 (722)
T KOG0532|consen  198 RNHLE-DLPEELCSLP-LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQS  248 (722)
T ss_pred             hhhhh-hCCHHHhCCc-eeeeecccCcee-ecchhhhhhhhheeeeeccCCCCC
Confidence            66665 4455555443 666666666666 566666666666666666666655

>KOG0590 consensus Checkpoint kinase and related serine/threonine protein kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=99.37  E-value=2.3e-13  Score=156.52  Aligned_cols=110  Identities=25%  Similarity=0.245  Sum_probs=93.1

Q ss_pred             cchhhHHHHHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCc--cccccccccCCCcCccccc
Q 045449          670 IRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQ--LSKQTQTLATIGYMAPEYG  747 (823)
Q Consensus       670 l~h~niv~~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~--~~~~~~~~gt~~y~aPE~~  747 (823)
                      +.-.-+-.++.|++.++.|+|..||.|||+|++|++++.++.+||+|||.+....-...  .......+|+..|+|||++
T Consensus       417 ~~~~e~~c~fKqL~~Gv~y~h~~GiahrdlK~enll~~~~g~lki~Dfg~~~vf~~~~e~~~~~~~g~~gS~pY~apE~~  496 (601)
T KOG0590|consen  417 LTPLEADCFFKQLLRGVKYLHSMGLAHRDLKLENLLVTENGILKIIDFGAASVFRYPWEKNIHESSGIVGSDPYLAPEVL  496 (601)
T ss_pred             cchhhhhHHHHHHHHHHHHHHhcCceeccCccccEEEecCCceEEeecCcceeeccCcchhhhhhcCcccCCcCcCcccc
Confidence            34444555788999999999999999999999999999999999999999876543322  2455678999999999999


Q ss_pred             CCCccccc-cceehhhhhhccccCCCCCcCCCc
Q 045449          748 TKGRVSTR-GDVCSFGIISGGKETRSMTVGETC  779 (823)
Q Consensus       748 ~~~~~~~~-~Dv~S~Gvv~~~~~~~~~~~~~~~  779 (823)
                      .+..|+++ .||||.|||+..|.+++.||....
T Consensus       497 ~~~~ydpr~vDiwS~~ii~~~m~~~~~~Wk~a~  529 (601)
T KOG0590|consen  497 TGKEYDPRAVDVWSCGIIYICMILGRFPWKVAK  529 (601)
T ss_pred             cccccCcchhhhhhccceEEEEecCCCcccccc
Confidence            99999776 799999999999999999986543

>KOG1164 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.34  E-value=3.3e-13  Score=145.96  Aligned_cols=103  Identities=21%  Similarity=0.180  Sum_probs=84.6

Q ss_pred             HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCC-----CcEEEeeccccc--ccCCCCc-----ccc-ccccccCCCcCcc
Q 045449          678 IISSSLEYLHFGHSIPIIHCDLKPSNVLLDED-----MVAHISDFGIAK--LLSGEDQ-----LSK-QTQTLATIGYMAP  744 (823)
Q Consensus       678 ~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~-----~~~kl~DfGla~--~~~~~~~-----~~~-~~~~~gt~~y~aP  744 (823)
                      +..|++.+|+++|+.|++||||||+|+++...     ..+.+.|||+|+  .+.....     ... .....||..|+++
T Consensus       127 ia~q~l~~l~~lH~~G~iHRDiKp~N~~~g~~~~~~~~~~~llDfGlar~~~~~~~~~~~~~~~r~~~~~~rGT~ry~S~  206 (322)
T KOG1164|consen  127 IAIQNLNALEDLHSKGFIHRDIKPENFVVGQSSRSEVRTLYLLDFGLARRFKYVGDSGGNLRPPRPQKGLFRGTLRYASI  206 (322)
T ss_pred             HHHHHHHHHHHHHhcCcccCCcCHHHeeecCCCCcccceEEEEecCCCccccccCCCCcccccCCCCccCCCCccccccH
Confidence            46799999999999999999999999999854     468999999999  4322211     111 2345699999999


Q ss_pred             cccCCCccccccceehhhhhhccccCCCCCcCCCcc
Q 045449          745 EYGTKGRVSTRGDVCSFGIISGGKETRSMTVGETCT  780 (823)
Q Consensus       745 E~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~~~  780 (823)
                      ....+...+++.|+||++.++.++..|..||.....
T Consensus       207 ~~H~~~e~~r~DDles~~Y~l~el~~g~LPW~~~~~  242 (322)
T KOG1164|consen  207 NVHLGIEQGRRDDLESLFYMLLELLKGSLPWEALEM  242 (322)
T ss_pred             HHhCCCccCCchhhhhHHHHHHHHhcCCCCCccccc
Confidence            999999999999999999999999999999866543

>KOG0606 consensus Microtubule-associated serine/threonine kinase and related proteins [Signal transduction mechanisms; General function prediction only]

Probab=99.29  E-value=4.1e-13  Score=153.89  Aligned_cols=97  Identities=25%  Similarity=0.220  Sum_probs=81.5

Q ss_pred             HHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCc-------------cccccccccCCCcCcccccC
Q 045449          682 SLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQ-------------LSKQTQTLATIGYMAPEYGT  748 (823)
Q Consensus       682 ~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~-------------~~~~~~~~gt~~y~aPE~~~  748 (823)
                      ++.+++|+|+-||||||+||+|.+++.-|++|++|||+++..-....             .-.....+||+.|+|||++.
T Consensus       152 mvla~Eylh~ygivhrdlkpdnllIT~mGhiKlTDfgLsk~GLms~atnl~eg~I~k~t~Ef~dKqvcgTPeyiaPeVil  231 (1205)
T KOG0606|consen  152 MVLAVEYLHSYGIVHRDLKPDNLLITSMGHIKLTDFGLSKKGLMSLATNLKEGHIEKDTHEFQDKQVCGTPEYIAPEVIL  231 (1205)
T ss_pred             hhHHhHhhccCCeecCCCCCCcceeeecccccccchhhhhhhhhhccchhhhcchHHHHHHhhhccccCCccccChhhhh
Confidence            35678888999999999999999999999999999999876311100             01123468999999999999


Q ss_pred             CCccccccceehhhhhhccccCCCCCcCCC
Q 045449          749 KGRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       749 ~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      ...|+..+|+|++|+|+||++.|..||.+.
T Consensus       232 rqgygkpvdwwamGiIlyeFLVgcvpffGd  261 (1205)
T KOG0606|consen  232 RQGYGKPVDWWAMGIILYEFLVGCVPFFGD  261 (1205)
T ss_pred             hhccCCCccHHHHHHHHHHHheeeeeccCC
Confidence            999999999999999999999999998665

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.28  E-value=5.4e-12  Score=140.95  Aligned_cols=200  Identities=36%  Similarity=0.524  Sum_probs=118.2

Q ss_pred             EEEcCCCCCccccCcccCCCCCCcEEEccCCCCCCCCCCCCCCCC-CCCEEECCCCcCcCCCchhhhcCCCCcEEecccc
Q 045449           56 GLNISSFNLQGTITPQLGNLSSLQTLDLSHNKLSGNIPSSIFNMH-TLKLLDFSDNQLFGSLSSFIFNMSSMTTIDLSIN  134 (823)
Q Consensus        56 ~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N  134 (823)
                      .|++..+.+...+ ..+..++.++.|++.+|.++ .+|.....++ +|+.|++++|.+. .+|..++.+++|+.|++++|
T Consensus        97 ~l~~~~~~~~~~~-~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N  173 (394)
T COG4886          97 SLDLNLNRLRSNI-SELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN  173 (394)
T ss_pred             eeeccccccccCc-hhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence            3555555554322 23445566777777777776 5666666664 7777777777765 44456667777777777777


Q ss_pred             cccCccCccccCCCCCCccccccceeeeccceeeccCccccccchhhHHHHHhhcCCCcccCCcccCCcchhhhhccccc
Q 045449          135 RLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEIGNLTKLKEIISTITNSTVCEIPREIGNLPYLARLALATN  214 (823)
Q Consensus       135 ~l~~~~p~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~~l~~n~~~~~ip~~l~~l~~L~~L~Ls~N  214 (823)
                      +++ .+|...       +.+++|+.|++++|+++ .+|..+.                         ....|++|++++|
T Consensus       174 ~l~-~l~~~~-------~~~~~L~~L~ls~N~i~-~l~~~~~-------------------------~~~~L~~l~~~~N  219 (394)
T COG4886         174 DLS-DLPKLL-------SNLSNLNNLDLSGNKIS-DLPPEIE-------------------------LLSALEELDLSNN  219 (394)
T ss_pred             hhh-hhhhhh-------hhhhhhhheeccCCccc-cCchhhh-------------------------hhhhhhhhhhcCC
Confidence            766 223221       35667777777777776 4554433                         3334555566666


Q ss_pred             cccCCccccccCCCCCcEEEccCCcccccCCcccccCCCCccEEEeeccccccccCccccCCCCCCeEEeecccccccCC
Q 045449          215 NLVGVVPVTIFNMSALKEISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSITNSSKLSDLELGENLFSGFIP  294 (823)
Q Consensus       215 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~lp~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p  294 (823)
                      .+. ..+..+.++.++..+.+.+|++. .++..+.. ++++++|++++|+++. ++. ++.+.+++.|++++|.+....|
T Consensus       220 ~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~-l~~l~~L~~s~n~i~~-i~~-~~~~~~l~~L~~s~n~~~~~~~  294 (394)
T COG4886         220 SII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGN-LSNLETLDLSNNQISS-ISS-LGSLTNLRELDLSGNSLSNALP  294 (394)
T ss_pred             cce-ecchhhhhcccccccccCCceee-eccchhcc-ccccceeccccccccc-ccc-ccccCccCEEeccCccccccch
Confidence            432 23445566666666666666665 33333333 5667777777777663 333 6666777777777777765555


Q ss_pred             Ccc
Q 045449          295 NTI  297 (823)
Q Consensus       295 ~~~  297 (823)
                      ...
T Consensus       295 ~~~  297 (394)
T COG4886         295 LIA  297 (394)
T ss_pred             hhh
Confidence            443

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.27  E-value=4.9e-12  Score=141.28  Aligned_cols=183  Identities=30%  Similarity=0.435  Sum_probs=127.9

Q ss_pred             CCCCceEEEeecCCCCccCCcccccccc-ccceEEecCCcceeccCccccCcccccEEEcccCcCCCCchhcccccCCCC
Q 045449          328 NCKKLKVLIVTGNPLDGILPKSIGNFSL-SLETILMANCSISGNIPQVVGNLSNLLVLELGGNNLTGPIPVTFSQLQTLQ  406 (823)
Q Consensus       328 ~l~~L~~L~Ls~N~l~~~~p~~~~~~~~-~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~  406 (823)
                      .++.++.|++.+|.++.. |...... . +|+.|++++|++. .+|..+..+++|+.|++++|+++ .+|...+.++.|+
T Consensus       114 ~~~~l~~L~l~~n~i~~i-~~~~~~~-~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~  189 (394)
T COG4886         114 ELTNLTSLDLDNNNITDI-PPLIGLL-KSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLN  189 (394)
T ss_pred             cccceeEEecCCcccccC-ccccccc-hhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhh
Confidence            335566666666666533 3323322 2 6777777777776 44456777888888888888887 5665555777888


Q ss_pred             EEEccCCCCCCcchHhhhcCCCCCEEEcccCcCcccccccccCCCCCCeEeccCCccccccchhhhccCCCcEEeccccc
Q 045449          407 AFDLTRNKLAGPITDELCHLARLHSLVLQGNKFSGSIPSCLGNLTSVRVLYLGLNIFTSVLSSTIWNLKDILFIDVSSNF  486 (823)
Q Consensus       407 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~  486 (823)
                      .|++++|+++ .+|.....+..|++|++++|.+. .++..+.+++++..+.+++|++... +..++.++.++.|++++|.
T Consensus       190 ~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~~-~~~~~~l~~l~~L~~s~n~  266 (394)
T COG4886         190 NLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLEDL-PESIGNLSNLETLDLSNNQ  266 (394)
T ss_pred             heeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeeec-cchhccccccceecccccc
Confidence            8888888887 55665555566888888888644 4566777788888888888877653 6677778888888888888


Q ss_pred             cccccCccccCCCCCcEEEcccCCCCCCCCCcc
Q 045449          487 LDGPLSLDIGNLKVVIGLDFSRNNLSGDIPITI  519 (823)
Q Consensus       487 l~g~~p~~~~~l~~L~~L~ls~N~l~g~ip~~~  519 (823)
                      ++...+  ++.+..++.||+++|.++...|...
T Consensus       267 i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~~~  297 (394)
T COG4886         267 ISSISS--LGSLTNLRELDLSGNSLSNALPLIA  297 (394)
T ss_pred             cccccc--ccccCccCEEeccCccccccchhhh
Confidence            875444  7788888888888888886655544

>COG0515 SPS1 Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

Probab=99.24  E-value=6.6e-12  Score=135.80  Aligned_cols=138  Identities=36%  Similarity=0.466  Sum_probs=107.8

Q ss_pred             eEEEEEEehHhhHH---HHHHHHHHHHHHhhcchh-hHHH----------------------------------------
Q 045449          642 MEVAVKVFHQQYER---ALKSFEDECEVRKRIRHR-NLVK----------------------------------------  677 (823)
Q Consensus       642 ~~vavK~~~~~~~~---~~~~~~~E~~~l~~l~h~-niv~----------------------------------------  677 (823)
                      ..+|+|.+......   ....|.+|+.+++.+.|+ ++++                                        
T Consensus        23 ~~~~~k~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  102 (384)
T COG0515          23 KLVALKVLAKKLESKSKEVERFLREIQILASLNHPPNIVKLYDFFQDEGSLYLVMEYVDGGSLEDLLKKIGRKGPLSESE  102 (384)
T ss_pred             cEEEEEeechhhccchhHHHHHHHHHHHHHHccCCcceeeEEEEEecCCEEEEEEecCCCCcHHHHHHhcccccCCCHHH
Confidence            34677777654422   356788888888888777 5666                                        


Q ss_pred             ---HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCC-cEEEeecccccccCCCCccc----cccccccCCCcCcccccCC
Q 045449          678 ---IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDM-VAHISDFGIAKLLSGEDQLS----KQTQTLATIGYMAPEYGTK  749 (823)
Q Consensus       678 ---~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~-~~kl~DfGla~~~~~~~~~~----~~~~~~gt~~y~aPE~~~~  749 (823)
                         ++.|++.++.++|+.+++|||+||+||+++... .++++|||.++.........    ......||..|+|||...+
T Consensus       103 ~~~~~~~~~~~l~~~H~~~~~hrd~kp~nil~~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~t~~~~~pe~~~~  182 (384)
T COG0515         103 ALFILAQILSALEYLHSKGIIHRDIKPENILLDRDGRVVKLIDFGLAKLLPDPGSTSSIPALPSTSVGTPGYMAPEVLLG  182 (384)
T ss_pred             HHHHHHHHHHHHHHHHhCCeeccCCCHHHeeecCCCCeEEEeccCcceecCCCCccccccccccccccccccCCHHHhcC
Confidence               346777788899999999999999999999888 79999999998654433221    2356789999999999887


Q ss_pred             ---CccccccceehhhhhhccccCCCCCcCCCc
Q 045449          750 ---GRVSTRGDVCSFGIISGGKETRSMTVGETC  779 (823)
Q Consensus       750 ---~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~~  779 (823)
                         ..+....|+||+|++++++.++..|+....
T Consensus       183 ~~~~~~~~~~D~~s~g~~~~~~~~~~~p~~~~~  215 (384)
T COG0515         183 LSLAYASSSSDIWSLGITLYELLTGLPPFEGEK  215 (384)
T ss_pred             CCCCCCCchHhHHHHHHHHHHHHhCCCCCCCCC
Confidence               578899999999999999999998865543

>PRK12274 serine/threonine protein kinase; Provisional

Probab=99.21  E-value=8.2e-12  Score=122.31  Aligned_cols=149  Identities=18%  Similarity=0.088  Sum_probs=101.6

Q ss_pred             ccCCccceeeccCCeEEEEEEehHhhH----HHHHHHHHHHHHHhhcch-hhHHH-------------------------
Q 045449          628 DRFSENNLIGIGNGMEVAVKVFHQQYE----RALKSFEDECEVRKRIRH-RNLVK-------------------------  677 (823)
Q Consensus       628 ~~f~~~~~lg~g~~~~vavK~~~~~~~----~~~~~~~~E~~~l~~l~h-~niv~-------------------------  677 (823)
                      +.|......+.+ +..++.+.+.....    -....|.+|+++++++.| +++.+                         
T Consensus        13 ~~f~~v~~~~~~-~~k~~~~~l~~~~~~~~~~~~~l~~rE~~iL~~L~~~~~vP~ll~~~~~~lvmeyI~G~~L~~~~~~   91 (218)
T PRK12274         13 DTFGRILLVRGG-ERKFVRRDLSAAPWWLRGVAWWLARREALALRQLDGLPRTPRLLHWDGRHLDRSYLAGAAMYQRPPR   91 (218)
T ss_pred             CCcceEEEeecC-CceeeecccccchhhhhhHHHHHHHHHHHHHHhcCCCCCCCEEEEEcCEEEEEeeecCccHHhhhhh
Confidence            445544444553 46677666643321    122368899999999954 44443                         


Q ss_pred             ----HHHHHHHHhhhcCCCCEEeccC-CCCCEEeCCCCcEEEeecccccccCCCCcc----c--c-----ccccccCCCc
Q 045449          678 ----IISSSLEYLHFGHSIPIIHCDL-KPSNVLLDEDMVAHISDFGIAKLLSGEDQL----S--K-----QTQTLATIGY  741 (823)
Q Consensus       678 ----~~~~~l~~L~~~h~~~ivHrdl-k~~NiLl~~~~~~kl~DfGla~~~~~~~~~----~--~-----~~~~~gt~~y  741 (823)
                          ++.|++++|+++|+.||+|||| ||+|||++.++.++|+|||+|.........    .  .     ......++.|
T Consensus        92 ~~~~~~~qi~~~L~~lH~~GIvHrDL~kp~NILv~~~g~i~LIDFG~A~~~~~~~~~~r~L~~rDl~~llk~~~~y~~~~  171 (218)
T PRK12274         92 GDLAYFRAARRLLQQLHRCGVAHNDLAKEANWLVQEDGSPAVIDFQLAVRGNPRARWMRLLAREDLRHLLKHKRMYCPAA  171 (218)
T ss_pred             hhHHHHHHHHHHHHHHHHCcCccCCCCCcceEEEcCCCCEEEEECCCceecCCcchHHHHHHHHHHHHHHHHHHhcCCCC
Confidence                3567788899999999999999 799999999999999999999865432210    0  0     0112367888


Q ss_pred             CcccccCCC-ccc-cccceehhhhhhccccCCCCCcCC
Q 045449          742 MAPEYGTKG-RVS-TRGDVCSFGIISGGKETRSMTVGE  777 (823)
Q Consensus       742 ~aPE~~~~~-~~~-~~~Dv~S~Gvv~~~~~~~~~~~~~  777 (823)
                      ++|+...-- ..+ ...+.++-|.-+|++.|+..+.-+
T Consensus       172 l~~~~~~~l~~~~~~~~~w~~~g~~~~~~~~~~~~~~~  209 (218)
T PRK12274        172 LTPVERRVLKRTSWIRELWFATGKPVYRFVTRRVLHWE  209 (218)
T ss_pred             CCHHHHhhhccchhHHHHHHHhcchHHHHHhccCCccc
Confidence            888743221 222 456889999999999999987533

>KOG4158 consensus BRPK/PTEN-induced protein kinase [Signal transduction mechanisms]

Probab=99.19  E-value=2.7e-11  Score=124.79  Aligned_cols=167  Identities=19%  Similarity=0.151  Sum_probs=103.0

Q ss_pred             eeeccCCeEEEEEEehHhhHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhhhcCCCCEEeccCCCCCEEe--CCCC--
Q 045449          635 LIGIGNGMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLL--DEDM--  710 (823)
Q Consensus       635 ~lg~g~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~l~~L~~~h~~~ivHrdlk~~NiLl--~~~~--  710 (823)
                      ..|++....+++|+.+....+        .-.-....-++-.-+++|.++++.|+|++||.|||+|++|||+  |+|.  
T Consensus       311 g~g~~~tlylvMkrY~~tLr~--------yl~~~~~s~r~~~~~laQlLEav~hL~~hgvAhRDlKSDNiL~ElddD~~P  382 (598)
T KOG4158|consen  311 GAGEPKTLYLVMKRYRQTLRE--------YLWTRHRSYRTGRVILAQLLEAVTHLHKHGVAHRDLKSDNILLELDDDEIP  382 (598)
T ss_pred             ccCCCceEEEehhcchhhHHH--------HHhcCCCchHHHHHHHHHHHHHHHHHHHccchhhcccccceEEEecCCCCc
Confidence            345554455677776544322        1112222233444578999999999999999999999999998  4555  


Q ss_pred             cEEEeecccccccCCC----CccccccccccCCCcCcccccCCCc------cccccceehhhhhhccccCCCCCcCCCcc
Q 045449          711 VAHISDFGIAKLLSGE----DQLSKQTQTLATIGYMAPEYGTKGR------VSTRGDVCSFGIISGGKETRSMTVGETCT  780 (823)
Q Consensus       711 ~~kl~DfGla~~~~~~----~~~~~~~~~~gt~~y~aPE~~~~~~------~~~~~Dv~S~Gvv~~~~~~~~~~~~~~~~  780 (823)
                      ...|+|||.+---...    ...+......|...-||||+....+      --.|+|.|+.|.+.||++...-||..--+
T Consensus       383 ~LVvaDFGCcLAd~~hGlqlpy~S~~Vd~GGNa~lmAPEi~ta~PGp~avvny~kAD~WA~GalaYEIfg~~NPFY~rGe  462 (598)
T KOG4158|consen  383 QLVVADFGCCLADDNHGLQLPYESDEVDLGGNAKLMAPEIATAVPGPNAVVNYEKADTWAAGALAYEIFGRSNPFYKRGE  462 (598)
T ss_pred             EEEEcccceeeeccccccccccccccccCCCcceecchhhhhcCCCCceeeccchhhhhhhhhhHHHHhccCCcccccch
Confidence            4578999986421110    0111122345677889999875432      14689999999999999999999876322


Q ss_pred             cccccccccCCcccccccCCCcccccccc
Q 045449          781 PVRESKYEVHPATTTIMEHPLPRVGEVMD  809 (823)
Q Consensus       781 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  809 (823)
                      .....+-......+.+++.+.|..++++.
T Consensus       463 m~L~~r~Yqe~qLPalp~~vpp~~rqlV~  491 (598)
T KOG4158|consen  463 MLLDTRTYQESQLPALPSRVPPVARQLVF  491 (598)
T ss_pred             heechhhhhhhhCCCCcccCChHHHHHHH
Confidence            22111111112233445555555555443

>PF14531 Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_A 3Q5Z_A 3Q60_A

Probab=99.16  E-value=1.8e-11  Score=126.41  Aligned_cols=94  Identities=20%  Similarity=0.252  Sum_probs=68.0

Q ss_pred             HHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccCC--------Cc
Q 045449          680 SSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTK--------GR  751 (823)
Q Consensus       680 ~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~--------~~  751 (823)
                      .|++..++++|+.|+||+||||+|++++.+|.++|+||+.......  ....   ...+..|.+||....        ..
T Consensus       152 ~Q~I~lvA~Lh~~GlVHgdi~~~nfll~~~G~v~Lg~F~~~~r~g~--~~~~---~~~~~~~~PPe~~~~~~~~~~~~~~  226 (288)
T PF14531_consen  152 VQMIRLVANLHSYGLVHGDIKPENFLLDQDGGVFLGDFSSLVRAGT--RYRC---SEFPVAFTPPELESCAGQFGQNNAP  226 (288)
T ss_dssp             HHHHHHHHHHHHTTEEEST-SGGGEEE-TTS-EEE--GGGEEETTE--EEEG---GGS-TTTS-HHHHHHHTSCHHSEEE
T ss_pred             HHHHHHHHHHhhcceEecccceeeEEEcCCCCEEEcChHHHeecCc--eeec---cCCCcccCChhhhhhhcccCcccce
Confidence            5677778888999999999999999999999999999987765432  1111   234578999997543        24


Q ss_pred             cccccceehhhhhhccccCCCCCcCCC
Q 045449          752 VSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       752 ~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      ++.+.|.|++|+++|.+.+++.||+..
T Consensus       227 ~t~~~DaW~LG~~ly~lWC~~lPf~~~  253 (288)
T PF14531_consen  227 YTFATDAWQLGITLYSLWCGRLPFGLS  253 (288)
T ss_dssp             E-HHHHHHHHHHHHHHHHHSS-STCCC
T ss_pred             eeeccCHHHHHHHHHHHHHccCCCCCC
Confidence            788999999999999999999999764

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.13  E-value=1.1e-11  Score=123.02  Aligned_cols=136  Identities=26%  Similarity=0.339  Sum_probs=112.3

Q ss_pred             ccccCcccccEEEcccCcCCCCchhcccccCCCCEEEccCCCCCCcchHhhhcCCCCCEEEcccCcCcccccccccCCCC
Q 045449          373 QVVGNLSNLLVLELGGNNLTGPIPVTFSQLQTLQAFDLTRNKLAGPITDELCHLARLHSLVLQGNKFSGSIPSCLGNLTS  452 (823)
Q Consensus       373 ~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~  452 (823)
                      ..+...+.|+++|||+|.++ .+..+..-++.++.|++|+|.+...  ..+..+.+|+.||||+|.++ .+-.+-..+-+
T Consensus       278 ~~~dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGN  353 (490)
T KOG1259|consen  278 VSADTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGN  353 (490)
T ss_pred             EecchHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcC
Confidence            33445677899999999998 7777888889999999999999833  33888999999999999998 55566677788


Q ss_pred             CCeEeccCCccccccchhhhccCCCcEEeccccccccccC-ccccCCCCCcEEEcccCCCCCC
Q 045449          453 VRVLYLGLNIFTSVLSSTIWNLKDILFIDVSSNFLDGPLS-LDIGNLKVVIGLDFSRNNLSGD  514 (823)
Q Consensus       453 L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~~p-~~~~~l~~L~~L~ls~N~l~g~  514 (823)
                      .+.|.|+.|.+...  +.++.+-+|..||+++|++...-. ..+++++-|+.+.|.+|.+.+.
T Consensus       354 IKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~  414 (490)
T KOG1259|consen  354 IKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS  414 (490)
T ss_pred             EeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence            89999999988754  567888899999999999985432 5789999999999999999853

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.13  E-value=2e-11  Score=127.63  Aligned_cols=210  Identities=24%  Similarity=0.337  Sum_probs=113.9

Q ss_pred             CCCCCcEEEccCCCCCCCCC--CCCCCCCCCCEEECCCCcCcCCCc--hhhhcCCCCcEEecccccccCccCccccCCCC
Q 045449           74 NLSSLQTLDLSHNKLSGNIP--SSIFNMHTLKLLDFSDNQLFGSLS--SFIFNMSSMTTIDLSINRLSGELPANICKIPS  149 (823)
Q Consensus        74 ~l~~L~~L~Ls~N~l~g~~p--~~~~~l~~L~~L~Ls~N~l~~~~p--~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~p~  149 (823)
                      ++.+|+...|.+.... ..+  .....+++++.||||.|-|....|  .....+++|+.|+||.|++.-.......    
T Consensus       119 n~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~----  193 (505)
T KOG3207|consen  119 NLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTT----  193 (505)
T ss_pred             hHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccch----
Confidence            4556777777666654 222  244566777777777776654322  3345677777777777777644333221    


Q ss_pred             CCccccccceeeeccceeeccCccccccchhhHHHHHhhcCCCcccCCcccCCcchhhhhccccccccCCccccccCCCC
Q 045449          150 TLSKCKQLEELNLGFNNLSGAIPKEIGNLTKLKEIISTITNSTVCEIPREIGNLPYLARLALATNNLVGVVPVTIFNMSA  229 (823)
Q Consensus       150 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~~l~~n~~~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  229 (823)
                        ..++.|+.|.|++|.|+-.   .+      .               .....+++|+.|+|..|............++.
T Consensus       194 --~~l~~lK~L~l~~CGls~k---~V------~---------------~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~  247 (505)
T KOG3207|consen  194 --LLLSHLKQLVLNSCGLSWK---DV------Q---------------WILLTFPSLEVLYLEANEIILIKATSTKILQT  247 (505)
T ss_pred             --hhhhhhheEEeccCCCCHH---HH------H---------------HHHHhCCcHHHhhhhcccccceecchhhhhhH
Confidence              2456677777777766511   11      0               11234566777777777533333334445666


Q ss_pred             CcEEEccCCcccccCC--cccccCCCCccEEEeecccccccc-Ccc-----ccCCCCCCeEEeecccccccC-CCccCCC
Q 045449          230 LKEISLLNNSLSGSLP--SRIDLSLPNVETLNLGINSFSGTI-PSS-----ITNSSKLSDLELGENLFSGFI-PNTIGNL  300 (823)
Q Consensus       230 L~~L~Ls~N~l~g~lp--~~~~~~l~~L~~L~Ls~N~l~~~~-p~~-----~~~l~~L~~L~Ls~N~l~~~~-p~~~~~l  300 (823)
                      |++|||++|++- ..+  ...+ .++.|..|+++.+.+...- |+.     ...+++|++|+++.|++...- -..+..+
T Consensus       248 L~~LdLs~N~li-~~~~~~~~~-~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l  325 (505)
T KOG3207|consen  248 LQELDLSNNNLI-DFDQGYKVG-TLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTL  325 (505)
T ss_pred             HhhccccCCccc-ccccccccc-cccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhcc
Confidence            777777777665 333  1222 2666666666666665322 222     234556666666666664321 1223334


Q ss_pred             cccCcccccCccccCC
Q 045449          301 RNLEFGNIADNYLTSS  316 (823)
Q Consensus       301 ~~L~~L~L~~N~l~~~  316 (823)
                      ++|+.|....|+++..
T Consensus       326 ~nlk~l~~~~n~ln~e  341 (505)
T KOG3207|consen  326 ENLKHLRITLNYLNKE  341 (505)
T ss_pred             chhhhhhccccccccc
Confidence            4555555555555543

>cd05147 RIO1_euk RIO kinase family; eukaryotic RIO1, catalytic domain

Probab=99.09  E-value=4.2e-11  Score=118.63  Aligned_cols=44  Identities=18%  Similarity=0.191  Sum_probs=38.8

Q ss_pred             HHHHHHHhhhc-CCCCEEeccCCCCCEEeCCCCcEEEeeccccccc
Q 045449          679 ISSSLEYLHFG-HSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLL  723 (823)
Q Consensus       679 ~~~~l~~L~~~-h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~  723 (823)
                      +.|++++|.++ |+.||+|||+||+||+++ ++.++|+|||+|...
T Consensus       123 ~~qi~~~L~~l~H~~giiHrDlkP~NIli~-~~~v~LiDFG~a~~~  167 (190)
T cd05147         123 YLQVIQIMRILYQDCRLVHADLSEYNLLYH-DGKLYIIDVSQSVEH  167 (190)
T ss_pred             HHHHHHHHHHHHHhCCcccCCCCHHHEEEE-CCcEEEEEccccccC
Confidence            56778888888 799999999999999998 478999999999754

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. This subfamily is composed of RIO1 proteins from eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle progression and c

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=99.07  E-value=1.4e-11  Score=137.83  Aligned_cols=107  Identities=21%  Similarity=0.382  Sum_probs=45.6

Q ss_pred             CcchhhhhccccccccCCccccccCCCCCcEEEccCCcccccCCcccccCCCCccEEEeeccccccccCccccCCCCCCe
Q 045449          202 NLPYLARLALATNNLVGVVPVTIFNMSALKEISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSITNSSKLSD  281 (823)
Q Consensus       202 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~lp~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  281 (823)
                      .+..++.+++..|.+.. +-..+..+++|+.|++.+|+|. .+...+. .+++|++|+|++|.|+...  .+..++.|+.
T Consensus        70 ~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~-~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~  144 (414)
T KOG0531|consen   70 SLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIE-KIENLLS-SLVNLQVLDLSFNKITKLE--GLSTLTLLKE  144 (414)
T ss_pred             HhHhHHhhccchhhhhh-hhcccccccceeeeeccccchh-hcccchh-hhhcchheecccccccccc--chhhccchhh
Confidence            34455555555555553 1222344455555555555554 2222111 1444555555555444222  1233333444


Q ss_pred             EEeecccccccCCCccCCCcccCcccccCccccC
Q 045449          282 LELGENLFSGFIPNTIGNLRNLEFGNIADNYLTS  315 (823)
Q Consensus       282 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~  315 (823)
                      |++++|.++.+  ..+..++.|+.+++++|.++.
T Consensus       145 L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~  176 (414)
T KOG0531|consen  145 LNLSGNLISDI--SGLESLKSLKLLDLSYNRIVD  176 (414)
T ss_pred             heeccCcchhc--cCCccchhhhcccCCcchhhh
Confidence            44444444422  223334444444444444443

>cd05145 RIO1_like RIO kinase family; RIO1, RIO3 and similar proteins, catalytic domain

Probab=99.05  E-value=2.2e-10  Score=113.88  Aligned_cols=47  Identities=23%  Similarity=0.202  Sum_probs=41.8

Q ss_pred             HHHHHHHHhhhcCC-CCEEeccCCCCCEEeCCCCcEEEeecccccccCC
Q 045449          678 IISSSLEYLHFGHS-IPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSG  725 (823)
Q Consensus       678 ~~~~~l~~L~~~h~-~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~  725 (823)
                      ++.|+++++.++|. .||+||||||+||+++ ++.++|+|||+|+....
T Consensus       122 i~~~l~~~l~~lH~~~givHrDlkP~NIll~-~~~~~liDFG~a~~~~~  169 (190)
T cd05145         122 LYEQVVEQMRRLYQEAGLVHGDLSEYNILYH-DGKPYIIDVSQAVELDH  169 (190)
T ss_pred             HHHHHHHHHHHHHHhCCEecCCCChhhEEEE-CCCEEEEEcccceecCC
Confidence            45688888999999 9999999999999999 78999999999987643

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. In addition, RIO3 is present in multicellular eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle pro

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=99.04  E-value=1.5e-10  Score=83.78  Aligned_cols=40  Identities=40%  Similarity=0.893  Sum_probs=30.9

Q ss_pred             HHHHHHHHHHHHhccCCCccccccccCCC--CCCccceeeeeC
Q 045449            8 SQHQQALLALKAHISYDHTNLFARNWTSS--TSVCIWIGITCD   48 (823)
Q Consensus         8 ~~~~~aLl~~k~~~~~~~~~~~~~~W~~~--~~~c~w~gv~c~   48 (823)
                      ++|++|||+||+++..||.+.+. +|+.+  .+||+|.||+||
T Consensus         2 ~~d~~aLl~~k~~l~~~~~~~l~-~W~~~~~~~~C~W~GV~Cd   43 (43)
T PF08263_consen    2 NQDRQALLAFKKSLNNDPSGVLS-SWNPSSDSDPCSWSGVTCD   43 (43)
T ss_dssp             HHHHHHHHHHHHCTT-SC-CCCT-T--TT--S-CCCSTTEEE-
T ss_pred             cHHHHHHHHHHHhcccccCcccc-cCCCcCCCCCeeeccEEeC
Confidence            68999999999999877777777 99987  799999999996

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.04  E-value=6.7e-11  Score=136.13  Aligned_cols=97  Identities=22%  Similarity=0.199  Sum_probs=71.5

Q ss_pred             HHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccC-CCCcccccc----ccccCCCcCcccccCCC---
Q 045449          679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLS-GEDQLSKQT----QTLATIGYMAPEYGTKG---  750 (823)
Q Consensus       679 ~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~-~~~~~~~~~----~~~gt~~y~aPE~~~~~---  750 (823)
                      +-|++.+|..+|+.||+|+|||.+|||++.-..+.|+||.--+... +++.....+    +...-..|.|||.+...   
T Consensus       126 aFQLL~al~qcH~~gVcHGDIKsENILiTSWNW~~LtDFAsFKPtYLPeDNPadf~fFFDTSrRRtCYiAPERFv~~~~~  205 (1431)
T KOG1240|consen  126 AFQLLKALSQCHKLGVCHGDIKSENILITSWNWLYLTDFASFKPTYLPEDNPADFTFFFDTSRRRTCYIAPERFVSALGK  205 (1431)
T ss_pred             HHHHHHHHHHHHHcCccccccccceEEEeeechhhhhcccccCCccCCCCCcccceEEEecCCceeeecChHhhhccccc
Confidence            5689999999999999999999999999999999999998665421 222211111    11223479999965431   


Q ss_pred             -------c-cccccceehhhhhhccccCCCCCc
Q 045449          751 -------R-VSTRGDVCSFGIISGGKETRSMTV  775 (823)
Q Consensus       751 -------~-~~~~~Dv~S~Gvv~~~~~~~~~~~  775 (823)
                             . .+++-||||+|||++|+.+...|.
T Consensus       206 ~~~~q~~~~L~paMDIFS~GCViaELf~Eg~Pl  238 (1431)
T KOG1240|consen  206 TSVGQDAPLLTPAMDIFSAGCVIAELFLEGRPL  238 (1431)
T ss_pred             cccCCcccccChhhhhhhhhHHHHHHHhcCCCc
Confidence                   1 467889999999999998764443

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.01  E-value=6.2e-10  Score=106.99  Aligned_cols=105  Identities=29%  Similarity=0.343  Sum_probs=27.2

Q ss_pred             ccceEEecCCcceeccCcccc-CcccccEEEcccCcCCCCchhcccccCCCCEEEccCCCCCCcchHhhhcCCCCCEEEc
Q 045449          356 SLETILMANCSISGNIPQVVG-NLSNLLVLELGGNNLTGPIPVTFSQLQTLQAFDLTRNKLAGPITDELCHLARLHSLVL  434 (823)
Q Consensus       356 ~L~~L~L~~N~l~~~~p~~~~-~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  434 (823)
                      .+++|+|++|.|+.+  ..++ .+.+|+.|||++|.++. ++ .+..++.|+.|++++|+|+...+.....+++|++|+|
T Consensus        20 ~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~-l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L   95 (175)
T PF14580_consen   20 KLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITK-LE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYL   95 (175)
T ss_dssp             ------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S-CHHHHHH-TT--EEE-
T ss_pred             ccccccccccccccc--cchhhhhcCCCEEECCCCCCcc-cc-CccChhhhhhcccCCCCCCccccchHHhCCcCCEEEC
Confidence            344444444444422  1232 35566666666666663 32 3555666666666666666332222234566666666


Q ss_pred             ccCcCcccc-cccccCCCCCCeEeccCCccc
Q 045449          435 QGNKFSGSI-PSCLGNLTSVRVLYLGLNIFT  464 (823)
Q Consensus       435 s~N~l~g~~-p~~~~~l~~L~~L~Ls~N~l~  464 (823)
                      ++|+|...- -..+..+++|+.|+|.+|.++
T Consensus        96 ~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~  126 (175)
T PF14580_consen   96 SNNKISDLNELEPLSSLPKLRVLSLEGNPVC  126 (175)
T ss_dssp             TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred             cCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence            666665321 123344455555555555444

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.99  E-value=7.1e-11  Score=120.45  Aligned_cols=238  Identities=20%  Similarity=0.337  Sum_probs=157.8

Q ss_pred             CCCccEEEeeccccccc----cCccccCCCCCCeEEeecccccc----cCCCccCCCcccCcccccCccccCCCCccccc
Q 045449          252 LPNVETLNLGINSFSGT----IPSSITNSSKLSDLELGENLFSG----FIPNTIGNLRNLEFGNIADNYLTSSTPELSFL  323 (823)
Q Consensus       252 l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~  323 (823)
                      +..++.++||+|.|...    +-..+.+.++|+..++|+- ++|    .+|+.+.                      .+.
T Consensus        29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~----------------------~l~   85 (382)
T KOG1909|consen   29 MDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALK----------------------MLS   85 (382)
T ss_pred             cCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHH----------------------HHH
Confidence            55677777777776422    2233444556666666542 222    2222211                      022


Q ss_pred             ccccCCCCceEEEeecCCCCccCCcccccc---ccccceEEecCCcceecc-------------CccccCcccccEEEcc
Q 045449          324 SSLTNCKKLKVLIVTGNPLDGILPKSIGNF---SLSLETILMANCSISGNI-------------PQVVGNLSNLLVLELG  387 (823)
Q Consensus       324 ~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~---~~~L~~L~L~~N~l~~~~-------------p~~~~~l~~L~~L~Ls  387 (823)
                      ..+..+++|++|+||.|.|.-.-+..|..+   ..+|++|+|.+|.+.-.-             ....+.-+.|+++...
T Consensus        86 ~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~  165 (382)
T KOG1909|consen   86 KALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICG  165 (382)
T ss_pred             HHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEee
Confidence            345566677777777777764444433322   146777777777665211             1223445789999999


Q ss_pred             cCcCCCC----chhcccccCCCCEEEccCCCCCCc----chHhhhcCCCCCEEEcccCcCccc----ccccccCCCCCCe
Q 045449          388 GNNLTGP----IPVTFSQLQTLQAFDLTRNKLAGP----ITDELCHLARLHSLVLQGNKFSGS----IPSCLGNLTSVRV  455 (823)
Q Consensus       388 ~N~l~g~----~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~g~----~p~~~~~l~~L~~  455 (823)
                      +|++...    +...|...+.|+.+.++.|.|...    +...|..++.|+.|||..|.|+-.    +...+..++.|+.
T Consensus       166 rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~E  245 (382)
T KOG1909|consen  166 RNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRE  245 (382)
T ss_pred             ccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchhee
Confidence            9999743    334567778999999999998632    234567899999999999999743    3345677889999


Q ss_pred             EeccCCccccccchhh-----hccCCCcEEecccccccc----ccCccccCCCCCcEEEcccCCCC
Q 045449          456 LYLGLNIFTSVLSSTI-----WNLKDILFIDVSSNFLDG----PLSLDIGNLKVVIGLDFSRNNLS  512 (823)
Q Consensus       456 L~Ls~N~l~~~~p~~~-----~~l~~L~~LdLs~N~l~g----~~p~~~~~l~~L~~L~ls~N~l~  512 (823)
                      |+++.+.+...-...+     ...+.|++|++.+|.++-    .+..++...+.|..|+|++|.|.
T Consensus       246 l~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~  311 (382)
T KOG1909|consen  246 LNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG  311 (382)
T ss_pred             ecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence            9999999876544433     236899999999999985    34456777899999999999884

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.98  E-value=9.7e-11  Score=116.43  Aligned_cols=132  Identities=26%  Similarity=0.257  Sum_probs=104.7

Q ss_pred             cccceEEecCCcceeccCccccCcccccEEEcccCcCCCCchhcccccCCCCEEEccCCCCCCcchHhhhcCCCCCEEEc
Q 045449          355 LSLETILMANCSISGNIPQVVGNLSNLLVLELGGNNLTGPIPVTFSQLQTLQAFDLTRNKLAGPITDELCHLARLHSLVL  434 (823)
Q Consensus       355 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  434 (823)
                      ..|++++||+|.|+ .+..++.-.+.++.|++|+|.+. .+. .+..+++|+.||||+|.++ .+..+-..+.+++.|.|
T Consensus       284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~-nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~L  359 (490)
T KOG1259|consen  284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQ-NLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKL  359 (490)
T ss_pred             hhhhhccccccchh-hhhhhhhhccceeEEecccccee-eeh-hhhhcccceEeecccchhH-hhhhhHhhhcCEeeeeh
Confidence            56888888888887 45666777888999999999987 343 3778889999999999988 55566677888999999


Q ss_pred             ccCcCcccccccccCCCCCCeEeccCCcccccc-chhhhccCCCcEEeccccccccccC
Q 045449          435 QGNKFSGSIPSCLGNLTSVRVLYLGLNIFTSVL-SSTIWNLKDILFIDVSSNFLDGPLS  492 (823)
Q Consensus       435 s~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~LdLs~N~l~g~~p  492 (823)
                      +.|.+...  +.+..+-+|..||+++|++.... -..+++++-|+.+.|-+|.+.+...
T Consensus       360 a~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vd  416 (490)
T KOG1259|consen  360 AQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVD  416 (490)
T ss_pred             hhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccch
Confidence            99987633  44677888999999999887642 3578899999999999999986543

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.97  E-value=4.4e-11  Score=133.92  Aligned_cols=108  Identities=24%  Similarity=0.317  Sum_probs=62.5

Q ss_pred             CCCCCcEEEccCCcccccCCcccccCCCCccEEEeeccccccccCccccCCCCCCeEEeecccccccCCCccCCCcccCc
Q 045449          226 NMSALKEISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSITNSSKLSDLELGENLFSGFIPNTIGNLRNLEF  305 (823)
Q Consensus       226 ~l~~L~~L~Ls~N~l~g~lp~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  305 (823)
                      .+..++.+++..|.++ .+-..+. .+.+|+.|++..|+|..+ ...+..+++|++|+|++|+|+.+.  .+..++.|+.
T Consensus        70 ~l~~l~~l~l~~n~i~-~~~~~l~-~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~  144 (414)
T KOG0531|consen   70 SLTSLKELNLRQNLIA-KILNHLS-KLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKE  144 (414)
T ss_pred             HhHhHHhhccchhhhh-hhhcccc-cccceeeeeccccchhhc-ccchhhhhcchheecccccccccc--chhhccchhh
Confidence            4456666667777776 2222222 266777777777777633 222556666777777777776553  2445555666


Q ss_pred             ccccCccccCCCCcccccccccCCCCceEEEeecCCCCcc
Q 045449          306 GNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGI  345 (823)
Q Consensus       306 L~L~~N~l~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~  345 (823)
                      |++++|.++..       ..+..++.|+.+++++|.+...
T Consensus       145 L~l~~N~i~~~-------~~~~~l~~L~~l~l~~n~i~~i  177 (414)
T KOG0531|consen  145 LNLSGNLISDI-------SGLESLKSLKLLDLSYNRIVDI  177 (414)
T ss_pred             heeccCcchhc-------cCCccchhhhcccCCcchhhhh
Confidence            66666666654       2344455555556666655543

>PRK10345 hypothetical protein; Provisional

Probab=98.96  E-value=6.8e-10  Score=111.07  Aligned_cols=91  Identities=18%  Similarity=0.265  Sum_probs=67.3

Q ss_pred             CccceeeccCCe---------EEEEEEehHhhHHHHHHHHHHHHHHhhc-----chhhHHHH------------------
Q 045449          631 SENNLIGIGNGM---------EVAVKVFHQQYERALKSFEDECEVRKRI-----RHRNLVKI------------------  678 (823)
Q Consensus       631 ~~~~~lg~g~~~---------~vavK~~~~~~~~~~~~~~~E~~~l~~l-----~h~niv~~------------------  678 (823)
                      .....||.|+..         ..+||++........+.+.+|+++++++     .||||+++                  
T Consensus         5 ~~~~~LG~G~~~~Vy~hp~~~~k~IKv~~~~~~~~~~~~~rEi~~l~~L~~~~~~h~nIvr~yg~~et~~g~g~v~~~I~   84 (210)
T PRK10345          5 SEQSPLGTGRHRKCYAHPEDAQRCIKIVYHRGDGGDKEIRRELKYYAHLSRRLIDWSGIPRYYGTVETDCGTGYVYDVIA   84 (210)
T ss_pred             CCcceecCCCceEEEECCCCcCeEEEEEeccccchHHHHHHHHHHHHHhhccCCCCcccceeeEEEEeCCCCeEEEEEEe
Confidence            345677777611         1368877654334457899999999999     57999981                  


Q ss_pred             -------------------------HHHHHHHh-hhcCCCCEEeccCCCCCEEeCC----CCcEEEeeccccc
Q 045449          679 -------------------------ISSSLEYL-HFGHSIPIIHCDLKPSNVLLDE----DMVAHISDFGIAK  721 (823)
Q Consensus       679 -------------------------~~~~l~~L-~~~h~~~ivHrdlk~~NiLl~~----~~~~kl~DfGla~  721 (823)
                                               +.+++..+ +|+|+.+|+||||||+|||++.    +..++|+||+-++
T Consensus        85 e~~G~~~~tL~~~l~~~~~~e~~~~~~~~L~~l~~yLh~~~IvhrDlKp~NILl~~~~~~~~~~~LiDg~G~~  157 (210)
T PRK10345         85 DFDGKPSITLTEFAEQCRYEEDVAQLRQLLKKLKRYLLDNRIVTMELKPQNILCQRISESEVIPVVCDNIGES  157 (210)
T ss_pred             cCCCCcchhHHHHHHcccccHhHHHHHHHHHHHHHHHHHCCEeecCCCHHHEEEeccCCCCCcEEEEECCCCc
Confidence                                     34666566 8999999999999999999974    3489999954343

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.96  E-value=5.1e-10  Score=107.60  Aligned_cols=127  Identities=27%  Similarity=0.343  Sum_probs=50.7

Q ss_pred             ccCcccccEEEcccCcCCCCchhccc-ccCCCCEEEccCCCCCCcchHhhhcCCCCCEEEcccCcCcccccccc-cCCCC
Q 045449          375 VGNLSNLLVLELGGNNLTGPIPVTFS-QLQTLQAFDLTRNKLAGPITDELCHLARLHSLVLQGNKFSGSIPSCL-GNLTS  452 (823)
Q Consensus       375 ~~~l~~L~~L~Ls~N~l~g~~p~~~~-~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~-~~l~~  452 (823)
                      +.+..++++|+|++|+++ .|. .++ .+.+|+.||||+|.|+.. . .+..++.|++|++++|+++. ++..+ ..+++
T Consensus        15 ~~n~~~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~~l-~-~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~   89 (175)
T PF14580_consen   15 YNNPVKLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQITKL-E-GLPGLPRLKTLDLSNNRISS-ISEGLDKNLPN   89 (175)
T ss_dssp             -----------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S--CHHHHHH-TT
T ss_pred             cccccccccccccccccc-ccc-chhhhhcCCCEEECCCCCCccc-c-CccChhhhhhcccCCCCCCc-cccchHHhCCc
Confidence            345567899999999998 343 455 578899999999999843 3 47778999999999999984 44444 46889


Q ss_pred             CCeEeccCCccccccc-hhhhccCCCcEEeccccccccccC---ccccCCCCCcEEEc
Q 045449          453 VRVLYLGLNIFTSVLS-STIWNLKDILFIDVSSNFLDGPLS---LDIGNLKVVIGLDF  506 (823)
Q Consensus       453 L~~L~Ls~N~l~~~~p-~~~~~l~~L~~LdLs~N~l~g~~p---~~~~~l~~L~~L~l  506 (823)
                      |+.|+|++|++...-- ..+..+++|+.|+|.+|.++..--   ..+..+++|+.||-
T Consensus        90 L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~  147 (175)
T PF14580_consen   90 LQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG  147 (175)
T ss_dssp             --EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred             CCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence            9999999999876422 566788899999999998875421   23567788888873

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.95  E-value=7.7e-11  Score=123.31  Aligned_cols=65  Identities=23%  Similarity=0.328  Sum_probs=40.2

Q ss_pred             CCCCccEEEeeccccccccC--ccccCCCCCCeEEeecccccccCC--CccCCCcccCcccccCccccCC
Q 045449          251 SLPNVETLNLGINSFSGTIP--SSITNSSKLSDLELGENLFSGFIP--NTIGNLRNLEFGNIADNYLTSS  316 (823)
Q Consensus       251 ~l~~L~~L~Ls~N~l~~~~p--~~~~~l~~L~~L~Ls~N~l~~~~p--~~~~~l~~L~~L~L~~N~l~~~  316 (823)
                      ++.+|+...|.+.... ..+  .-...+++++.||||+|-|....|  .....+++|+.|+|+.|++...
T Consensus       119 n~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~  187 (505)
T KOG3207|consen  119 NLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNF  187 (505)
T ss_pred             hHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCC
Confidence            3667777778776654 222  245567778888888887765422  2234566666666666666543

>KOG1033 consensus eIF-2alpha kinase PEK/EIF2AK3 [Translation, ribosomal structure and biogenesis]

Probab=98.92  E-value=1.4e-10  Score=125.04  Aligned_cols=90  Identities=28%  Similarity=0.442  Sum_probs=75.5

Q ss_pred             HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCC----ccccccccccCCCcCcccccCCCccc
Q 045449          678 IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGED----QLSKQTQTLATIGYMAPEYGTKGRVS  753 (823)
Q Consensus       678 ~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~----~~~~~~~~~gt~~y~aPE~~~~~~~~  753 (823)
                      .+.|...++.|   ++.+|||+||.||....+..+||.|||+...+....    .....+..+||..||+||.+.+..|+
T Consensus       364 ~~~q~~~~~~y---k~~ihrdlkp~nif~~~d~q~kIgDFgl~ts~~~~~~~~~~~a~~t~~~gt~~YmsPEQi~g~~y~  440 (516)
T KOG1033|consen  364 IFKQIAPAVEY---KGLIHRDLKPSNIFFSDDDQLKIGDFGLVTSQDKDETVAPAAASHTQQVGTLLYMSPEQIRGQQYS  440 (516)
T ss_pred             HHHhhccchhh---ccchhhhccccccccccchhhhhhhhhheeecccCCcccchhhhhhhcccccccCCHHHHhhhhhh
Confidence            45555555555   899999999999999999899999999988765444    12334567899999999999999999


Q ss_pred             cccceehhhhhhccccC
Q 045449          754 TRGDVCSFGIISGGKET  770 (823)
Q Consensus       754 ~~~Dv~S~Gvv~~~~~~  770 (823)
                      .|+||||+|++++|+..
T Consensus       441 ~kvdIyaLGlil~EL~~  457 (516)
T KOG1033|consen  441 EKVDIYALGLILAELLI  457 (516)
T ss_pred             hhcchhhHHHHHHHHHH
Confidence            99999999999999876

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.91  E-value=4.6e-11  Score=121.84  Aligned_cols=229  Identities=24%  Similarity=0.302  Sum_probs=116.9

Q ss_pred             cccCCCCCCcEEEccCCCCCC----CCCCCCCCCCCCCEEECCCCc---CcCCCchh-------hhcCCCCcEEeccccc
Q 045449           70 PQLGNLSSLQTLDLSHNKLSG----NIPSSIFNMHTLKLLDFSDNQ---LFGSLSSF-------IFNMSSMTTIDLSINR  135 (823)
Q Consensus        70 ~~l~~l~~L~~L~Ls~N~l~g----~~p~~~~~l~~L~~L~Ls~N~---l~~~~p~~-------~~~l~~L~~L~Ls~N~  135 (823)
                      +.+..+..++.|+||+|.|..    .+-..+.+.++|+.-++|+=.   +...+|+.       +...+.|++||||.|.
T Consensus        24 ~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA  103 (382)
T KOG1909|consen   24 EELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNA  103 (382)
T ss_pred             HHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccc
Confidence            455667888899999998862    355566777788888888642   22234433       3445578888888887


Q ss_pred             ccCccCccccCCCCCCccccccceeeeccceeeccCccccccch-hhHHHHHhhcCCCcccCCcccCCcchhhhhccccc
Q 045449          136 LSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEIGNLT-KLKEIISTITNSTVCEIPREIGNLPYLARLALATN  214 (823)
Q Consensus       136 l~~~~p~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~~l~~n~~~~~ip~~l~~l~~L~~L~Ls~N  214 (823)
                      |.-.-+..+.   .-+.++..|++|+|.+|.+.   |..=+.+. .|..|   ..+.       -.++-+.|+++..++|
T Consensus       104 ~G~~g~~~l~---~ll~s~~~L~eL~L~N~Glg---~~ag~~l~~al~~l---~~~k-------k~~~~~~Lrv~i~~rN  167 (382)
T KOG1909|consen  104 FGPKGIRGLE---ELLSSCTDLEELYLNNCGLG---PEAGGRLGRALFEL---AVNK-------KAASKPKLRVFICGRN  167 (382)
T ss_pred             cCccchHHHH---HHHHhccCHHHHhhhcCCCC---hhHHHHHHHHHHHH---HHHh-------ccCCCcceEEEEeecc
Confidence            7633333221   22355777888888887664   21111111 12222   1111       1233345666666666


Q ss_pred             cccCCc----cccccCCCCCcEEEccCCcccccC---CcccccCCCCccEEEeecccccc----ccCccccCCCCCCeEE
Q 045449          215 NLVGVV----PVTIFNMSALKEISLLNNSLSGSL---PSRIDLSLPNVETLNLGINSFSG----TIPSSITNSSKLSDLE  283 (823)
Q Consensus       215 ~l~~~~----p~~~~~l~~L~~L~Ls~N~l~g~l---p~~~~~~l~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~  283 (823)
                      ++....    ...|...+.|+.+.++.|.|...-   -...+..+++|++|||..|-|+.    .+...++.+++|+.|+
T Consensus       168 rlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~  247 (382)
T KOG1909|consen  168 RLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELN  247 (382)
T ss_pred             ccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeec
Confidence            654321    122334455666666666553100   00011225556666666555542    1223344455555555


Q ss_pred             eecccccccCCCcc-----CCCcccCcccccCcccc
Q 045449          284 LGENLFSGFIPNTI-----GNLRNLEFGNIADNYLT  314 (823)
Q Consensus       284 Ls~N~l~~~~p~~~-----~~l~~L~~L~L~~N~l~  314 (823)
                      ++++.+...-..+|     ...+.|+.|.|.+|.++
T Consensus       248 l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt  283 (382)
T KOG1909|consen  248 LGDCLLENEGAIAFVDALKESAPSLEVLELAGNEIT  283 (382)
T ss_pred             ccccccccccHHHHHHHHhccCCCCceeccCcchhH
Confidence            55555543222221     12344555555555554

>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=98.90  E-value=5.8e-10  Score=131.16  Aligned_cols=97  Identities=19%  Similarity=0.083  Sum_probs=81.2

Q ss_pred             HHHHHHHHhhhcCCCCEEeccCCCCCEEeCC-------CCcEEEeecccccccCCCCccccccccccCCCcCcccccCCC
Q 045449          678 IISSSLEYLHFGHSIPIIHCDLKPSNVLLDE-------DMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKG  750 (823)
Q Consensus       678 ~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~-------~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~  750 (823)
                      +..|++.-+.++|+.+|||+||||+|.|+..       ...++|+|||.+--+.--.........++|-.+-.+|...+.
T Consensus       799 ~~~qml~ive~lH~~~IIHgDiKPDNfll~~~~~~~~~~~~l~lIDfG~siDm~lfp~~~~F~~~~~td~f~C~EM~~gr  878 (974)
T KOG1166|consen  799 FSCQMLRIVEHLHAMGIIHGDIKPDNFLLRREICADSDSKGLYLIDFGRSIDMKLFPDGTKFKAVWHTDLFDCIEMREGR  878 (974)
T ss_pred             HHHHHHHHHHHHHhcceecccCCcceeEeecccCCCCcccceEEEecccceeeeEcCCCcEEeeeeccccchhHHHhcCC
Confidence            4678888899999999999999999999932       346899999998765432233445667899999999999999


Q ss_pred             ccccccceehhhhhhccccCCCCC
Q 045449          751 RVSTRGDVCSFGIISGGKETRSMT  774 (823)
Q Consensus       751 ~~~~~~Dv~S~Gvv~~~~~~~~~~  774 (823)
                      .++..+|-|.++.+++.|+||+.-
T Consensus       879 pWtYq~DyfGlAa~~h~mLFG~y~  902 (974)
T KOG1166|consen  879 PWTYQIDYFGLAATVHVMLFGKYM  902 (974)
T ss_pred             CCchhhhhHHHHHHHHHHHHHHHH
Confidence            999999999999999999999853

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=98.84  E-value=1.4e-09  Score=106.68  Aligned_cols=131  Identities=22%  Similarity=0.329  Sum_probs=95.3

Q ss_pred             CeEEEEEEehHhh--HHHHHHHHHHHHHHhhcchhhHHHH----------------------------------------
Q 045449          641 GMEVAVKVFHQQY--ERALKSFEDECEVRKRIRHRNLVKI----------------------------------------  678 (823)
Q Consensus       641 ~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~~----------------------------------------  678 (823)
                      |..+++|++....  ....++|..|.-.++-..||||..+                                        
T Consensus       213 gndivakil~vr~~t~risrdfneefp~lrifshpnilpvlgacnsppnlv~isq~mp~gslynvlhe~t~vvvd~sqav  292 (448)
T KOG0195|consen  213 GNDIVAKILNVREVTARISRDFNEEFPALRIFSHPNILPVLGACNSPPNLVIISQYMPFGSLYNVLHEQTSVVVDHSQAV  292 (448)
T ss_pred             CcchhhhhhhhhhcchhhcchhhhhCcceeeecCCchhhhhhhccCCCCceEeeeeccchHHHHHHhcCccEEEecchHH
Confidence            5667888886443  3444789999999999999999982                                        


Q ss_pred             -----HHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEe--ecccccccCCCCccccccccccCCCcCcccccCCCc
Q 045449          679 -----ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHIS--DFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGR  751 (823)
Q Consensus       679 -----~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~--DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~  751 (823)
                           +|++++|||.+. +-|..-.+.+..+++|++.+++|+  |--++..         .....-.|.||+||.+...+
T Consensus       293 ~faldiargmaflhsle-p~ipr~~lns~hvmidedltarismad~kfsfq---------e~gr~y~pawmspealqrkp  362 (448)
T KOG0195|consen  293 RFALDIARGMAFLHSLE-PMIPRFYLNSKHVMIDEDLTARISMADTKFSFQ---------EVGRAYSPAWMSPEALQRKP  362 (448)
T ss_pred             HHHHHHHhhHHHHhhcc-hhhhhhhcccceEEecchhhhheecccceeeee---------ccccccCcccCCHHHHhcCc
Confidence                 456666666543 345555788899999999988874  3222211         12234578999999988765


Q ss_pred             c---ccccceehhhhhhccccCCCCCcCCCccc
Q 045449          752 V---STRGDVCSFGIISGGKETRSMTVGETCTP  781 (823)
Q Consensus       752 ~---~~~~Dv~S~Gvv~~~~~~~~~~~~~~~~~  781 (823)
                      -   -..+|+|||.+++||+-|++.||.+....
T Consensus       363 ed~n~raadmwsfaillwel~trevpfadlspm  395 (448)
T KOG0195|consen  363 EDLNIRAADMWSFAILLWELNTREVPFADLSPM  395 (448)
T ss_pred             hhcchhhhhHHHHHHHHHHhhccccccccCCch
Confidence            4   34689999999999999999999886433

>KOG1023 consensus Natriuretic peptide receptor, guanylate cyclase [Signal transduction mechanisms]

Probab=98.83  E-value=1.2e-09  Score=120.20  Aligned_cols=105  Identities=29%  Similarity=0.368  Sum_probs=76.5

Q ss_pred             HHHHHHHHHHhhhcCCCCE-EeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccCCCc---
Q 045449          676 VKIISSSLEYLHFGHSIPI-IHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGR---  751 (823)
Q Consensus       676 v~~~~~~l~~L~~~h~~~i-vHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~---  751 (823)
                      ..++..++.+|.|+|...| .|+.+++.|.++|....+|++|||+.................-..-|.|||.+....   
T Consensus        51 ~s~~rdi~~Gl~ylh~s~i~~hg~l~s~nClvd~~w~lklt~~Gl~~~~~~~~~~~~~~~~~~~~lw~aPellr~~~~~~  130 (484)
T KOG1023|consen   51 LSFIRDISKGLAYLHNSPIGYHGALKSSNCLVDSRWVLKLTDFGLNSLLEETAEPEAHHPIRKALLWTAPELLRGALSQS  130 (484)
T ss_pred             HHHHHHHHHHHHHHhcCcceeeeeeccccceeeeeEEEEechhhhcccccccccccccchhHHHHhccCHHHhccccccc
Confidence            3344555555566666655 999999999999999999999999988764311111111222346789999887642   


Q ss_pred             ----cccccceehhhhhhccccCCCCCcCCCcc
Q 045449          752 ----VSTRGDVCSFGIISGGKETRSMTVGETCT  780 (823)
Q Consensus       752 ----~~~~~Dv~S~Gvv~~~~~~~~~~~~~~~~  780 (823)
                          .+.++||||||++++|+.+++.||.....
T Consensus       131 ~~~~~~~~gdiYs~~ii~~ei~~r~~~~~~~~~  163 (484)
T KOG1023|consen  131 LESALTQKGDIYSFGIIMYEILFRSGPFDLRNL  163 (484)
T ss_pred             ccccccccCCeehHHHHHHHHHhccCccccccc
Confidence                36679999999999999999999977443

>cd05144 RIO2_C RIO kinase family; RIO2, C-terminal catalytic domain

Probab=98.83  E-value=5.9e-09  Score=104.45  Aligned_cols=47  Identities=28%  Similarity=0.279  Sum_probs=42.2

Q ss_pred             HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccC
Q 045449          678 IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLS  724 (823)
Q Consensus       678 ~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~  724 (823)
                      ++.++++++.++|..+|+|||+||+||++++++.++|+|||++....
T Consensus       130 ~~~~i~~~l~~lh~~gi~H~Dl~p~Nill~~~~~~~liDfg~~~~~~  176 (198)
T cd05144         130 VLDEILEEIVKAYKHGIIHGDLSEFNILVDDDEKIYIIDWPQMVSTD  176 (198)
T ss_pred             HHHHHHHHHHHHHHCCCCcCCCCcccEEEcCCCcEEEEECCccccCC
Confidence            45678888889999999999999999999999999999999997654

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO2 is present in archaea and eukaryotes. It contains an N-terminal winged helix (wHTH) domain and a C-terminal RIO kinase catalytic domain. The wHTH domain is primarily seen in DNA-binding proteins, although some wHTH dom

>KOG0590 consensus Checkpoint kinase and related serine/threonine protein kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=98.82  E-value=1.1e-09  Score=126.31  Aligned_cols=138  Identities=25%  Similarity=0.296  Sum_probs=106.9

Q ss_pred             eEEEEEEehHhh--HHHHHHHHHHHHHHhhcc-hhhHHH-----------------------------------------
Q 045449          642 MEVAVKVFHQQY--ERALKSFEDECEVRKRIR-HRNLVK-----------------------------------------  677 (823)
Q Consensus       642 ~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~-h~niv~-----------------------------------------  677 (823)
                      ..+|+|.+....  ....+....|..+-..+. |+|+++                                         
T Consensus        47 ~~~a~~~~s~~~~~~~~~~~i~~e~~~~~~~s~h~n~~~~~~~~~~~~~~~~~~~~s~g~~~f~~i~~~~~~~~~~~~~~  126 (601)
T KOG0590|consen   47 SSSATKPISIPPKSEDSSEHIDTETDIQKKLSKHSNTVHMIEPSSSPRSYLLSLSYSDGGSLFSKISHPDSTGTSSSSAS  126 (601)
T ss_pred             ceeeccCCCCCCCccchhhhcCccccccccccccccccccCCccCCCcccccccCcccccccccccccCCccCCCCcchh
Confidence            446666554332  233344555777777776 888887                                         


Q ss_pred             -HHHHHHHHhhhcC-CCCEEeccCCCCCEEeCCCC-cEEEeecccccccCC-CCcccccccccc-CCCcCcccccCCCc-
Q 045449          678 -IISSSLEYLHFGH-SIPIIHCDLKPSNVLLDEDM-VAHISDFGIAKLLSG-EDQLSKQTQTLA-TIGYMAPEYGTKGR-  751 (823)
Q Consensus       678 -~~~~~l~~L~~~h-~~~ivHrdlk~~NiLl~~~~-~~kl~DfGla~~~~~-~~~~~~~~~~~g-t~~y~aPE~~~~~~-  751 (823)
                       ++.|...++.|.| ..++.|||+||+|.+++..+ ..|++|||+|..+.. ..........+| ++.|+|||...+.. 
T Consensus       127 ~~~~ql~s~l~~~H~~~~~~h~~ikP~n~~l~~s~~~l~~~df~~At~~~~~~g~~~~~~~~~g~s~~y~a~E~~~~~~~  206 (601)
T KOG0590|consen  127 RYLPQLNSGLSYLHPENGVTHRDIKPSNSLLDESGSALKIADFGLATAYRNKNGAERSLKDRCGSSPPYGAPEHLSGKAY  206 (601)
T ss_pred             hhhhhhccCccccCcccccccCCCCCccchhccCCCcccCCCchhhccccccCCcceeeecccCCCCCCCCcccccchhh
Confidence             3568888899999 99999999999999999998 999999999988765 333333445678 99999999988744 


Q ss_pred             cccccceehhhhhhccccCCCCCcCCCc
Q 045449          752 VSTRGDVCSFGIISGGKETRSMTVGETC  779 (823)
Q Consensus       752 ~~~~~Dv~S~Gvv~~~~~~~~~~~~~~~  779 (823)
                      .++..|+||.|+++..+.+|..|++...
T Consensus       207 ~~~~~d~~S~g~~l~~~~~g~~p~~~~~  234 (601)
T KOG0590|consen  207 RGPSVDVWSLGIVLSAMLTGELPWDFPS  234 (601)
T ss_pred             cCCCcccccccccccccccCCCCccccc
Confidence            4777899999999999999999887653

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.82  E-value=2e-09  Score=84.99  Aligned_cols=61  Identities=38%  Similarity=0.500  Sum_probs=43.4

Q ss_pred             CCCcEEEccCCCCCCCCCCCCCCCCCCCEEECCCCcCcCCCchhhhcCCCCcEEecccccc
Q 045449           76 SSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQLFGSLSSFIFNMSSMTTIDLSINRL  136 (823)
Q Consensus        76 ~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l  136 (823)
                      ++|++|++++|+|+...+..|.++++|++|++++|.|+...|.+|.++++|++|++++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            3567777777777755556777777777777777777766666777777777777777764

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.76  E-value=5.7e-09  Score=82.42  Aligned_cols=59  Identities=31%  Similarity=0.539  Sum_probs=33.6

Q ss_pred             CccEEEeeccccccccCccccCCCCCCeEEeecccccccCCCccCCCcccCcccccCcc
Q 045449          254 NVETLNLGINSFSGTIPSSITNSSKLSDLELGENLFSGFIPNTIGNLRNLEFGNIADNY  312 (823)
Q Consensus       254 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~  312 (823)
                      +|++|++++|+|+...+..|.++++|++|++++|+++.+.|.+|.++++|++|++++|+
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            45555555555554444555555566666666666655555555555555555555554

...

>smart00090 RIO RIO-like kinase

Probab=98.75  E-value=1e-08  Score=105.27  Aligned_cols=46  Identities=24%  Similarity=0.213  Sum_probs=41.7

Q ss_pred             HHHHHHHHhhhcCCCC-EEeccCCCCCEEeCCCCcEEEeecccccccC
Q 045449          678 IISSSLEYLHFGHSIP-IIHCDLKPSNVLLDEDMVAHISDFGIAKLLS  724 (823)
Q Consensus       678 ~~~~~l~~L~~~h~~~-ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~  724 (823)
                      ++.|++++++++|..+ |+|||+||+||+++ ++.++|+|||.|+...
T Consensus       153 i~~qi~~~l~~LH~~g~iiH~Dikp~NIli~-~~~i~LiDFg~a~~~~  199 (237)
T smart00090      153 LYDDILEEMRKLYKEGELVHGDLSEYNILVH-DGKVVIIDVSQSVELD  199 (237)
T ss_pred             HHHHHHHHHHHHHhcCCEEeCCCChhhEEEE-CCCEEEEEChhhhccC
Confidence            4678899999999999 99999999999999 7899999999988643

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.72  E-value=1.3e-08  Score=121.65  Aligned_cols=83  Identities=25%  Similarity=0.295  Sum_probs=42.2

Q ss_pred             cccceEEecCCcceeccCccccCcccccEEEcccCcCCCC-chhcccccCCCCEEEccCCCCCCcchH---hhhcCCCCC
Q 045449          355 LSLETILMANCSISGNIPQVVGNLSNLLVLELGGNNLTGP-IPVTFSQLQTLQAFDLTRNKLAGPITD---ELCHLARLH  430 (823)
Q Consensus       355 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~-~p~~~~~l~~L~~L~Ls~N~l~~~~p~---~~~~l~~L~  430 (823)
                      ++|+.|.+..+.....+.+....+..+..+-+..+.+.+. .-...+.++++..+.+++=.+....-.   ....++.+.
T Consensus       770 ~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~~~l~~~~ve~~p~l~~~P~~~  849 (889)
T KOG4658|consen  770 PHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPLSFLKLEELIVEECPKLGKLPLLS  849 (889)
T ss_pred             CcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeEecccCccchhheehhcCcccccCcccc
Confidence            5666666666555545555555555555555555665554 233444555555554444333311111   124566666


Q ss_pred             EEEcccC
Q 045449          431 SLVLQGN  437 (823)
Q Consensus       431 ~L~Ls~N  437 (823)
                      .+.+.++
T Consensus       850 ~~~i~~~  856 (889)
T KOG4658|consen  850 TLTIVGC  856 (889)
T ss_pred             ccceecc
Confidence            6666664

>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated

Probab=98.67  E-value=3.1e-08  Score=114.85  Aligned_cols=103  Identities=21%  Similarity=0.262  Sum_probs=74.9

Q ss_pred             HHHHHHHhccCCccceeeccC----------CeEEEEEEehHh--------hHHHHHHHHHHHHHHhhcchhhHHH----
Q 045449          620 YHELLRATDRFSENNLIGIGN----------GMEVAVKVFHQQ--------YERALKSFEDECEVRKRIRHRNLVK----  677 (823)
Q Consensus       620 ~~~l~~at~~f~~~~~lg~g~----------~~~vavK~~~~~--------~~~~~~~~~~E~~~l~~l~h~niv~----  677 (823)
                      +.........|...+.||+|+          +..+++|+....        .....+++.+|++++.+++|++++.    
T Consensus       325 ~~~~~~~~~~~~~~~~iG~G~~g~Vy~~~~~~~~~v~k~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~  404 (535)
T PRK09605        325 WIKEEEVKRRKIPDHLIGKGAEADIKKGEYLGRDAVIKERVPKGYRHPELDERLRTERTRAEARLLSEARRAGVPTPVIY  404 (535)
T ss_pred             eccccccccccCccceeccCCcEEEEEEeecCccceeEEEecccccchhHHHHHHHHHHHHHHHHHHhhcccCCCeeEEE
Confidence            333334445556678899987          122344432111        1122357899999999999988764    


Q ss_pred             ----------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeeccccccc
Q 045449          678 ----------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLL  723 (823)
Q Consensus       678 ----------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~  723 (823)
                                                  ++.+++++|.++|+.+++|||+||+|||+ .++.++|+|||+++..
T Consensus       405 ~~~~~~~~lv~E~~~g~~L~~~l~~~~~~~~~i~~~L~~lH~~giiHrDlkp~NILl-~~~~~~liDFGla~~~  477 (535)
T PRK09605        405 DVDPEEKTIVMEYIGGKDLKDVLEGNPELVRKVGEIVAKLHKAGIVHGDLTTSNFIV-RDDRLYLIDFGLGKYS  477 (535)
T ss_pred             EEeCCCCEEEEEecCCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCCChHHEEE-ECCcEEEEeCcccccC
Confidence                                        34678888999999999999999999999 5778999999999874

>PRK01723 3-deoxy-D-manno-octulosonic-acid kinase; Reviewed

Probab=98.64  E-value=2.6e-08  Score=102.45  Aligned_cols=84  Identities=18%  Similarity=0.199  Sum_probs=65.1

Q ss_pred             CeEEEEEEehHhh-------------HHHHHHHHHHHHHHhhcchhhH--HH----------------------------
Q 045449          641 GMEVAVKVFHQQY-------------ERALKSFEDECEVRKRIRHRNL--VK----------------------------  677 (823)
Q Consensus       641 ~~~vavK~~~~~~-------------~~~~~~~~~E~~~l~~l~h~ni--v~----------------------------  677 (823)
                      +..+|||++....             ......+.+|++++.++.|+++  ++                            
T Consensus        55 ~~~~vlk~~~r~~~i~kv~~~~~~~~~~~~~r~~rE~~ll~~L~~~gi~vP~pl~~~~~~~~~~~~~~lV~e~l~G~~~L  134 (239)
T PRK01723         55 GVNWVLRHYRRGGLIGKLSKDRYLFTGLERTRAFAEFRLLAQLYEAGLPVPRPIAARVVRHGLFYRADILIERIEGARDL  134 (239)
T ss_pred             CceEEEEEeeEcchHHhhhhhcccccchhhhHHHHHHHHHHHHHhCCCCCceeEeeeeeecCcceeeeEEEEecCCCCCH
Confidence            3457888774211             1223568899999999988764  11                            


Q ss_pred             ------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccC
Q 045449          678 ------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLS  724 (823)
Q Consensus       678 ------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~  724 (823)
                                  .+.++++++.++|+.||+|||+||+|||++.++.++|+|||.++...
T Consensus       135 ~~~l~~~~l~~~~~~~i~~~l~~lH~~GI~HrDlkp~NILv~~~~~v~LIDfg~~~~~~  193 (239)
T PRK01723        135 VALLQEAPLSEEQWQAIGQLIARFHDAGVYHADLNAHNILLDPDGKFWLIDFDRGELRT  193 (239)
T ss_pred             HHHHhcCCCCHHHHHHHHHHHHHHHHCCCCCCCCCchhEEEcCCCCEEEEECCCcccCC
Confidence                        14567888999999999999999999999988899999999887643

>cd05610 STKc_MASTL Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase

Probab=98.61  E-value=8.1e-09  Score=122.64  Aligned_cols=95  Identities=15%  Similarity=0.037  Sum_probs=71.8

Q ss_pred             HHhhhcCCC-CEEeccCCCC-CEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccCCCccccccceehh
Q 045449          684 EYLHFGHSI-PIIHCDLKPS-NVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSF  761 (823)
Q Consensus       684 ~~L~~~h~~-~ivHrdlk~~-NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~  761 (823)
                      .+.++.|.+ .-.|++.+|. |++++.+...++.|||.++..............+||+.|||||++.+..|+.++|||||
T Consensus       487 ~~~~~~~~~~~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~~vGT~~Y~APE~l~~~~~~~~~DiwSl  566 (669)
T cd05610         487 SGSQSGSYPAITPTQKPRPHGNLYQTPKQVKIGTPYRTPKSVRRGAAPVEGERILGTPDYLAPELLLGKPHGPAVDWWAL  566 (669)
T ss_pred             cccccCCCcccCCCCCCCCCCceeECCccccccccCCCchhhhcccccccCCceeeCccccCHHHcCCCCCCcHHHHHHH
Confidence            344455544 2234555565 66667777788999999887654433333445689999999999999999999999999


Q ss_pred             hhhhccccCCCCCcCCC
Q 045449          762 GIISGGKETRSMTVGET  778 (823)
Q Consensus       762 Gvv~~~~~~~~~~~~~~  778 (823)
                      ||++||+++|..||.+.
T Consensus       567 G~il~ElltG~~pf~~~  583 (669)
T cd05610         567 GVCLFEFLTGIPPFNDE  583 (669)
T ss_pred             HHHHHHHHHCCCCCCCC
Confidence            99999999999998654

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ1481

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.60  E-value=8.9e-10  Score=121.59  Aligned_cols=127  Identities=27%  Similarity=0.327  Sum_probs=75.1

Q ss_pred             cccEEEcccCcCCCCchhcccccCCCCEEEccCCCCCCcchHhhhcCCCCCEEEcccCcCccccccc-ccCCCCCCeEec
Q 045449          380 NLLVLELGGNNLTGPIPVTFSQLQTLQAFDLTRNKLAGPITDELCHLARLHSLVLQGNKFSGSIPSC-LGNLTSVRVLYL  458 (823)
Q Consensus       380 ~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~-~~~l~~L~~L~L  458 (823)
                      .|.+.+.++|+|. .+..++.-++.|+.||||+|+++..  +.+..++.|++|||++|.++ .+|.. ...+. |+.|+|
T Consensus       165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~l  239 (1096)
T KOG1859|consen  165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNL  239 (1096)
T ss_pred             hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhhh-heeeee
Confidence            4566666666665 4555566666666677777766632  25566666667777777666 34432 22333 666667


Q ss_pred             cCCccccccchhhhccCCCcEEeccccccccccCc-cccCCCCCcEEEcccCCCCC
Q 045449          459 GLNIFTSVLSSTIWNLKDILFIDVSSNFLDGPLSL-DIGNLKVVIGLDFSRNNLSG  513 (823)
Q Consensus       459 s~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~~p~-~~~~l~~L~~L~ls~N~l~g  513 (823)
                      ++|.++..  ..+.++.+|+.||+|+|-|++--.- -+..+.+|+.|+|.+|.+..
T Consensus       240 rnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c  293 (1096)
T KOG1859|consen  240 RNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC  293 (1096)
T ss_pred             cccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence            76666543  3455666666777777766653321 24455566666666666543

>TIGR03724 arch_bud32 Kae1-associated kinase Bud32

Probab=98.58  E-value=6.8e-08  Score=96.81  Aligned_cols=82  Identities=21%  Similarity=0.278  Sum_probs=64.8

Q ss_pred             CeEEEEEEehHh--------hHHHHHHHHHHHHHHhhcchhhHHH---------------------------------HH
Q 045449          641 GMEVAVKVFHQQ--------YERALKSFEDECEVRKRIRHRNLVK---------------------------------II  679 (823)
Q Consensus       641 ~~~vavK~~~~~--------~~~~~~~~~~E~~~l~~l~h~niv~---------------------------------~~  679 (823)
                      +..|++|+....        ......++.+|++++.+++|+++..                                 ++
T Consensus        17 ~~~~viK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~~~~~~lv~e~~~g~~l~~~~~~~~~~~~   96 (199)
T TIGR03724        17 GLKAVIKERVPKSYRHPELDERIRRERTRNEARLLSRARKAGVNTPVVYDVDPDNKTIVMEYIEGKPLKDVIEEGNDELL   96 (199)
T ss_pred             CccEEEEEecCCcCcCchHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEEEECCccHHHHHhhcHHHHH
Confidence            567899985421        1223467889999999988775432                                 35


Q ss_pred             HHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeeccccccc
Q 045449          680 SSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLL  723 (823)
Q Consensus       680 ~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~  723 (823)
                      .+++.+|.++|+.+++|||++|.||+++ ++.++++|||+++..
T Consensus        97 ~~i~~~l~~lH~~gi~H~Dl~~~Nil~~-~~~~~liDfg~a~~~  139 (199)
T TIGR03724        97 REIGRLVGKLHKAGIVHGDLTTSNIIVR-DDKLYLIDFGLGKYS  139 (199)
T ss_pred             HHHHHHHHHHHHCCeecCCCCcceEEEE-CCcEEEEECCCCcCC
Confidence            6777888899999999999999999999 789999999998764

Members of this protein family are the Bud32 protein associated with Kae1 (kinase-associated endopeptidase 1) in the Archaea. In many Archaeal genomes, Kae1 and Bud32 are fused. The complex is homologous to the Kae1 and Bud32 subunits of the eukaryotic KEOPS complex, an apparently ancient protein kinase-containing molecular machine.

>cd05119 RIO RIO kinase family, catalytic domain

Probab=98.57  E-value=9.3e-08  Score=94.77  Aligned_cols=49  Identities=24%  Similarity=0.221  Sum_probs=43.7

Q ss_pred             HHHHHHHHHHHhhhcCC-CCEEeccCCCCCEEeCCCCcEEEeecccccccC
Q 045449          675 LVKIISSSLEYLHFGHS-IPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLS  724 (823)
Q Consensus       675 iv~~~~~~l~~L~~~h~-~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~  724 (823)
                      ..+++.+++.+++++|. .+|+|||+||+||+++ ++.++++|||.+....
T Consensus       116 ~~~~~~~~~~~l~~lh~~~~ivH~Dl~p~Nili~-~~~~~liDfg~a~~~~  165 (187)
T cd05119         116 PEELYDQILELMRKLYREAGLVHGDLSEYNILVD-DGKVYIIDVPQAVEID  165 (187)
T ss_pred             HHHHHHHHHHHHHHHhhccCcCcCCCChhhEEEE-CCcEEEEECccccccc
Confidence            44577889999999999 9999999999999999 8899999999997654

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases present in archaea, bacteria and eukaryotes. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. RIO kinases contain a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. Most organisms contain at least two RIO kinases, RIO1 and RIO2. A third protein, RIO3, is present in multicellular eukaryotes. In yeast, RIO1 and RIO2 are essential for survival. They funct

>PRK14879 serine/threonine protein kinase; Provisional

Probab=98.56  E-value=8e-08  Score=97.30  Aligned_cols=82  Identities=23%  Similarity=0.255  Sum_probs=64.2

Q ss_pred             CeEEEEEEehHhh--------HHHHHHHHHHHHHHhhcchhhHHH-----------------------------------
Q 045449          641 GMEVAVKVFHQQY--------ERALKSFEDECEVRKRIRHRNLVK-----------------------------------  677 (823)
Q Consensus       641 ~~~vavK~~~~~~--------~~~~~~~~~E~~~l~~l~h~niv~-----------------------------------  677 (823)
                      |..|+||+.....        ......+.+|++++.++.|+++..                                   
T Consensus        19 ~~~~~vK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~~~~~~lv~e~~~G~~L~~~~~~~~~~~~   98 (211)
T PRK14879         19 GIKAVIKWRIPKRYRHPELDERIRRERTRREARIMSRARKAGVNVPAVYFVDPENFIIVMEYIEGEPLKDLINSNGMEEL   98 (211)
T ss_pred             CCceEEEEeCCcCCcChHHHHHHHHHHHHHHHHHHHHHHHCCCCCCeEEEEeCCCCEEEEEEeCCcCHHHHHHhccHHHH
Confidence            4678889754221        122356889999999998877653                                   


Q ss_pred             -HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeeccccccc
Q 045449          678 -IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLL  723 (823)
Q Consensus       678 -~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~  723 (823)
                       ++.++..+|.++|..+++|||++|.||+++ ++.++++|||.++..
T Consensus        99 ~i~~~i~~~l~~lH~~~i~H~Dl~p~Nil~~-~~~~~liDf~~a~~~  144 (211)
T PRK14879         99 ELSREIGRLVGKLHSAGIIHGDLTTSNMILS-GGKIYLIDFGLAEFS  144 (211)
T ss_pred             HHHHHHHHHHHHHHhCCcccCCCCcccEEEE-CCCEEEEECCcccCC
Confidence             234677788999999999999999999999 788999999998763

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.55  E-value=4.3e-08  Score=117.42  Aligned_cols=41  Identities=17%  Similarity=0.062  Sum_probs=20.4

Q ss_pred             cCCCcEEeccccccccccCccccCCCCCcEEEcccCCCCCC
Q 045449          474 LKDILFIDVSSNFLDGPLSLDIGNLKVVIGLDFSRNNLSGD  514 (823)
Q Consensus       474 l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~  514 (823)
                      .++|+.|.+........+.+....+..+..+-+..+.+.|.
T Consensus       769 ~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l  809 (889)
T KOG4658|consen  769 APHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGL  809 (889)
T ss_pred             cCcccEEEEecccccccCCCHHHHhhhcccEEecccccccc
Confidence            45555566555544444444444444444444555555543

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.52  E-value=3.1e-09  Score=117.38  Aligned_cols=128  Identities=27%  Similarity=0.386  Sum_probs=88.8

Q ss_pred             hhhhhccccccccCCccccccCCCCCcEEEccCCcccccCCcccccCCCCccEEEeeccccccccCccccCCCCCCeEEe
Q 045449          205 YLARLALATNNLVGVVPVTIFNMSALKEISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSITNSSKLSDLEL  284 (823)
Q Consensus       205 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~lp~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  284 (823)
                      .|...+.+.|.++ ....++.-++.|++|+|++|+++ ... .+. .+++|+.|||++|.++ .+|..-..--+|+.|.+
T Consensus       165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~-~v~-~Lr-~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~l  239 (1096)
T KOG1859|consen  165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFT-KVD-NLR-RLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNL  239 (1096)
T ss_pred             hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhh-hhH-HHH-hcccccccccccchhc-cccccchhhhhheeeee
Confidence            4667788888887 34456666778888888888887 333 333 3788888888888887 44443222234888888


Q ss_pred             ecccccccCCCccCCCcccCcccccCccccCCCCcccccccccCCCCceEEEeecCCCC
Q 045449          285 GENLFSGFIPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLD  343 (823)
Q Consensus       285 s~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~  343 (823)
                      ++|.++..  ..+.+|.+|+.||+++|-+.+..    -...++.+..|+.|+|.+|.+-
T Consensus       240 rnN~l~tL--~gie~LksL~~LDlsyNll~~hs----eL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  240 RNNALTTL--RGIENLKSLYGLDLSYNLLSEHS----ELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             cccHHHhh--hhHHhhhhhhccchhHhhhhcch----hhhHHHHHHHHHHHhhcCCccc
Confidence            88887743  34667888888888888877642    2345666777888888888775

>cd05120 APH_ChoK_like Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family

Probab=98.38  E-value=5e-07  Score=85.61  Aligned_cols=80  Identities=21%  Similarity=0.261  Sum_probs=60.8

Q ss_pred             eEEEEEEehHhhHHHHHHHHHHHHHHhhcchh--hHHH------------------------------------HHHHHH
Q 045449          642 MEVAVKVFHQQYERALKSFEDECEVRKRIRHR--NLVK------------------------------------IISSSL  683 (823)
Q Consensus       642 ~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~--niv~------------------------------------~~~~~l  683 (823)
                      ..++||+......  ...+.+|+..+.+++|.  .+.+                                    .+++++
T Consensus        22 ~~~~iK~~~~~~~--~~~~~~e~~~~~~l~~~~~~~p~~~~~~~~~~~~~~v~e~~~g~~~~~~~~~~~~~~~~~~~~~l   99 (155)
T cd05120          22 EDYVLKINPSREK--GADREREVAILQLLARKGLPVPKVLASGESDGWSYLLMEWIEGETLDEVSEEEKEDIAEQLAELL   99 (155)
T ss_pred             CeEEEEecCCCCc--hhHHHHHHHHHHHHHHcCCCCCeEEEEcCCCCccEEEEEecCCeecccCCHHHHHHHHHHHHHHH
Confidence            5789998865543  46788899999988763  3333                                    134455


Q ss_pred             HHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeeccccccc
Q 045449          684 EYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLL  723 (823)
Q Consensus       684 ~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~  723 (823)
                      .++|..+..+++|+|+||+||+++..+.++++|||.++..
T Consensus       100 ~~lh~~~~~~i~H~Dl~~~Nil~~~~~~~~l~Df~~~~~~  139 (155)
T cd05120         100 AKLHQLPLLVLCHGDLHPGNILVDDGKILGIIDWEYAGYG  139 (155)
T ss_pred             HHHhCCCceEEEecCCCcceEEEECCcEEEEEecccccCC
Confidence            5566555578999999999999999899999999988753

The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). The family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides and macrolides, leads to their inactivation and to bacterial antibiotic resistance. Phosphorylation of choline, ethanolamine, and homoserine serves

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.33  E-value=8.2e-08  Score=96.02  Aligned_cols=189  Identities=23%  Similarity=0.322  Sum_probs=98.0

Q ss_pred             CCCCcEEEccCCCCCC--CCCCCCCCCCCCCEEECCCCcCcCCCchhhhcCCCCcEEecccccccCccCccccCCCCCCc
Q 045449           75 LSSLQTLDLSHNKLSG--NIPSSIFNMHTLKLLDFSDNQLFGSLSSFIFNMSSMTTIDLSINRLSGELPANICKIPSTLS  152 (823)
Q Consensus        75 l~~L~~L~Ls~N~l~g--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~p~~~~  152 (823)
                      .+.++.|||.+|.|+.  .|-..+.+|+.|+.|+||.|.++..|-..=..+.+|++|-|.+..+.-.-..      +.+.
T Consensus        70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~------s~l~  143 (418)
T KOG2982|consen   70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQST------SSLD  143 (418)
T ss_pred             hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhh------hhhh
Confidence            4566777777777762  1223344666777777777776543322213455666666666655422111      2235


Q ss_pred             cccccceeeeccceeeccC--ccccccch-hhHHHHHhhcCCCcccCCcccCCcchhhhhccccccccCCccccccCCCC
Q 045449          153 KCKQLEELNLGFNNLSGAI--PKEIGNLT-KLKEIISTITNSTVCEIPREIGNLPYLARLALATNNLVGVVPVTIFNMSA  229 (823)
Q Consensus       153 ~l~~L~~L~Ls~N~l~~~~--p~~l~~l~-~L~~L~~l~~n~~~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  229 (823)
                      .++.++.|++|.|++.-..  .......+ .++                .+..++.+..++++-|++...+|       +
T Consensus       144 ~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~----------------tlh~~~c~~~~w~~~~~l~r~Fp-------n  200 (418)
T KOG2982|consen  144 DLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVL----------------TLHQLPCLEQLWLNKNKLSRIFP-------N  200 (418)
T ss_pred             cchhhhhhhhccchhhhhccccccccccchhhh----------------hhhcCCcHHHHHHHHHhHHhhcc-------c
Confidence            5666666666666443110  01111110 111                12234456666777777665544       5


Q ss_pred             CcEEEccCCcccccCCcccccCCCCccEEEeeccccccc-cCccccCCCCCCeEEeeccccccc
Q 045449          230 LKEISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGT-IPSSITNSSKLSDLELGENLFSGF  292 (823)
Q Consensus       230 L~~L~Ls~N~l~g~lp~~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~  292 (823)
                      +..+-+..|.+...-...-+..++.+..|+|+.|+|-.- --+.+.++++|..|.+++|.+...
T Consensus       201 v~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~  264 (418)
T KOG2982|consen  201 VNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDP  264 (418)
T ss_pred             chheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccccc
Confidence            556666666554222222222355666777777776421 123455666777777777766543

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.22  E-value=7.7e-08  Score=85.50  Aligned_cols=59  Identities=24%  Similarity=0.308  Sum_probs=26.7

Q ss_pred             CCCEEEcccCcCcccccccccCCCCCCeEeccCCccccccchhhhccCCCcEEeccccccc
Q 045449          428 RLHSLVLQGNKFSGSIPSCLGNLTSVRVLYLGLNIFTSVLSSTIWNLKDILFIDVSSNFLD  488 (823)
Q Consensus       428 ~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~  488 (823)
                      .++.|+|++|.++ .+|..+..++.|+.|+++.|.|.. .|..+..+.+|..||..+|.+.
T Consensus        78 t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~~-~p~vi~~L~~l~~Lds~~na~~  136 (177)
T KOG4579|consen   78 TATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLNA-EPRVIAPLIKLDMLDSPENARA  136 (177)
T ss_pred             hhhhhhcchhhhh-hchHHHhhhHHhhhcccccCcccc-chHHHHHHHhHHHhcCCCCccc
Confidence            3444444444444 334444444444444444444433 3344444555555555555443

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.19  E-value=1.9e-07  Score=83.02  Aligned_cols=133  Identities=18%  Similarity=0.288  Sum_probs=88.7

Q ss_pred             ccceEEecCCcceeccCcc---ccCcccccEEEcccCcCCCCchhcc-cccCCCCEEEccCCCCCCcchHhhhcCCCCCE
Q 045449          356 SLETILMANCSISGNIPQV---VGNLSNLLVLELGGNNLTGPIPVTF-SQLQTLQAFDLTRNKLAGPITDELCHLARLHS  431 (823)
Q Consensus       356 ~L~~L~L~~N~l~~~~p~~---~~~l~~L~~L~Ls~N~l~g~~p~~~-~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  431 (823)
                      .+..++|+++++- .+++.   +.....|+..+|++|.|.. .|..| ...+.++.|+|++|.|+ .+|..+..++.|+.
T Consensus        28 E~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk~-fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~  104 (177)
T KOG4579|consen   28 ELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFKK-FPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRS  104 (177)
T ss_pred             Hhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhhh-CCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhh
Confidence            4556777777765 23333   3445567777888888884 44444 45568888888888888 66778888888888


Q ss_pred             EEcccCcCcccccccccCCCCCCeEeccCCccccccchhhhccCCCcEEeccccccccccCc
Q 045449          432 LVLQGNKFSGSIPSCLGNLTSVRVLYLGLNIFTSVLSSTIWNLKDILFIDVSSNFLDGPLSL  493 (823)
Q Consensus       432 L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~~p~  493 (823)
                      |+++.|.|. ..|+.+..+.+|-.|+.-+|...- ||-.+..-...-..++.++.+.+..+.
T Consensus       105 lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~e-id~dl~~s~~~al~~lgnepl~~~~~~  164 (177)
T KOG4579|consen  105 LNLRFNPLN-AEPRVIAPLIKLDMLDSPENARAE-IDVDLFYSSLPALIKLGNEPLGDETKK  164 (177)
T ss_pred             cccccCccc-cchHHHHHHHhHHHhcCCCCcccc-CcHHHhccccHHHHHhcCCcccccCcc
Confidence            888888888 667777778888888888887765 333333323333334444555544443

>TIGR01982 UbiB 2-polyprenylphenol 6-hydroxylase

Probab=98.11  E-value=8.4e-06  Score=91.46  Aligned_cols=41  Identities=32%  Similarity=0.397  Sum_probs=37.4

Q ss_pred             HhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCC
Q 045449          685 YLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSG  725 (823)
Q Consensus       685 ~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~  725 (823)
                      +++.+|..|++|+|+||.||+++.++.++++|||+++.+..
T Consensus       269 ~l~ql~~~g~~H~D~hPgNilv~~~g~i~liDfG~~~~l~~  309 (437)
T TIGR01982       269 FLNQVLRDGFFHADLHPGNIFVLKDGKIIALDFGIVGRLSE  309 (437)
T ss_pred             HHHHHHhCCceeCCCCcccEEECCCCcEEEEeCCCeeECCH
Confidence            57788999999999999999999999999999999987653

This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol - 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species.

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.02  E-value=1.4e-06  Score=87.42  Aligned_cols=216  Identities=20%  Similarity=0.196  Sum_probs=102.4

Q ss_pred             CcccCCcchhhhhccccccccCCcc-cccc-CCCCCcEEEccCCcccc--cCCcccccCCCCccEEEeeccccccccCcc
Q 045449          197 PREIGNLPYLARLALATNNLVGVVP-VTIF-NMSALKEISLLNNSLSG--SLPSRIDLSLPNVETLNLGINSFSGTIPSS  272 (823)
Q Consensus       197 p~~l~~l~~L~~L~Ls~N~l~~~~p-~~~~-~l~~L~~L~Ls~N~l~g--~lp~~~~~~l~~L~~L~Ls~N~l~~~~p~~  272 (823)
                      +-.+..+..++.|.+.+..|...-. ..|+ ..+.++++||.+|.|+.  .+-. +...+|.|++|+|+.|+++..|-..
T Consensus        38 ~~~v~s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~-ile~lP~l~~LNls~N~L~s~I~~l  116 (418)
T KOG2982|consen   38 YLGVSSLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGA-ILEQLPALTTLNLSCNSLSSDIKSL  116 (418)
T ss_pred             eeeeccccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHH-HHhcCccceEeeccCCcCCCccccC
Confidence            3334444555666666665542211 1122 34567777777777762  1111 2224677777777777776444322


Q ss_pred             ccCCCCCCeEEeeccccccc-CCCccCCCcccCcccccCccccCCCCcccccccccCCCCceEEEeecCCCCccCCc--c
Q 045449          273 ITNSSKLSDLELGENLFSGF-IPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGILPK--S  349 (823)
Q Consensus       273 ~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~--~  349 (823)
                      -.-+.+|++|-|.+..+.-. ....+..++.++.|++|.|.++-.                   ++..|-....-|.  .
T Consensus       117 p~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~-------------------n~Dd~c~e~~s~~v~t  177 (418)
T KOG2982|consen  117 PLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQL-------------------NLDDNCIEDWSTEVLT  177 (418)
T ss_pred             cccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhh-------------------ccccccccccchhhhh
Confidence            12344666666666555422 122344556666666666644322                   1111111110000  0


Q ss_pred             ccccccccceEEecCCcceeccCccccCcccccEEEcccCcCCCCc-hhcccccCCCCEEEccCCCCCCcc-hHhhhcCC
Q 045449          350 IGNFSLSLETILMANCSISGNIPQVVGNLSNLLVLELGGNNLTGPI-PVTFSQLQTLQAFDLTRNKLAGPI-TDELCHLA  427 (823)
Q Consensus       350 ~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~-p~~~~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~  427 (823)
                      +... ..+..+.++-|++...       ++++..+-+..|.+...- -..+..++.+-.|+|+.|+|.... -+.+..++
T Consensus       178 lh~~-~c~~~~w~~~~~l~r~-------Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~  249 (418)
T KOG2982|consen  178 LHQL-PCLEQLWLNKNKLSRI-------FPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFP  249 (418)
T ss_pred             hhcC-CcHHHHHHHHHhHHhh-------cccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCc
Confidence            0000 1122222233333322       344555556666554321 223445566667777777775322 12355666


Q ss_pred             CCCEEEcccCcCc
Q 045449          428 RLHSLVLQGNKFS  440 (823)
Q Consensus       428 ~L~~L~Ls~N~l~  440 (823)
                      .|..|.+++|.+.
T Consensus       250 ~l~dlRv~~~Pl~  262 (418)
T KOG2982|consen  250 QLVDLRVSENPLS  262 (418)
T ss_pred             hhheeeccCCccc
Confidence            6777777766665

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.01  E-value=1.8e-07  Score=92.52  Aligned_cols=222  Identities=23%  Similarity=0.282  Sum_probs=119.0

Q ss_pred             CCCCcEEEccCCCCCC----CCCCCCCCCCCCCEEECCCCcC---cCCCc-------hhhhcCCCCcEEecccccccCcc
Q 045449           75 LSSLQTLDLSHNKLSG----NIPSSIFNMHTLKLLDFSDNQL---FGSLS-------SFIFNMSSMTTIDLSINRLSGEL  140 (823)
Q Consensus        75 l~~L~~L~Ls~N~l~g----~~p~~~~~l~~L~~L~Ls~N~l---~~~~p-------~~~~~l~~L~~L~Ls~N~l~~~~  140 (823)
                      +..+..+|||+|.|..    .+...+.+-.+|+..++|.-..   ...++       .++-.++.|+..+||.|.+....
T Consensus        29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~  108 (388)
T COG5238          29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF  108 (388)
T ss_pred             hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence            4556666666666642    2333445556666666665322   11222       23456677777788877776555


Q ss_pred             CccccCCCCCCccccccceeeeccceeeccCccccccch-hhHHHHHhhcCCCcccCCcccCCcchhhhhccccccccCC
Q 045449          141 PANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEIGNLT-KLKEIISTITNSTVCEIPREIGNLPYLARLALATNNLVGV  219 (823)
Q Consensus       141 p~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~~l~~n~~~~~ip~~l~~l~~L~~L~Ls~N~l~~~  219 (823)
                      |..+.   ..+++-+.|++|.|++|.+- .+..  +.+- .|.+|   ..|.       -.++-+.|+..+...|++...
T Consensus       109 ~e~L~---d~is~~t~l~HL~l~NnGlG-p~aG--~rigkal~~l---a~nK-------Kaa~kp~Le~vicgrNRleng  172 (388)
T COG5238         109 PEELG---DLISSSTDLVHLKLNNNGLG-PIAG--GRIGKALFHL---AYNK-------KAADKPKLEVVICGRNRLENG  172 (388)
T ss_pred             chHHH---HHHhcCCCceeEEeecCCCC-ccch--hHHHHHHHHH---HHHh-------hhccCCCceEEEeccchhccC
Confidence            54331   12356677888888888663 2221  1111 22222   2221       223445677777777776532


Q ss_pred             ccc----cccCCCCCcEEEccCCcccccCCcc--------cccCCCCccEEEeecccccc----ccCccccCCCCCCeEE
Q 045449          220 VPV----TIFNMSALKEISLLNNSLSGSLPSR--------IDLSLPNVETLNLGINSFSG----TIPSSITNSSKLSDLE  283 (823)
Q Consensus       220 ~p~----~~~~l~~L~~L~Ls~N~l~g~lp~~--------~~~~l~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~  283 (823)
                      .-.    .+..-..|+.+.+..|.|.   |..        ++ .+.+|+.|||+.|-|+-    .+...++.++.|+.|.
T Consensus       173 s~~~~a~~l~sh~~lk~vki~qNgIr---pegv~~L~~~gl~-y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~  248 (388)
T COG5238         173 SKELSAALLESHENLKEVKIQQNGIR---PEGVTMLAFLGLF-YSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELR  248 (388)
T ss_pred             cHHHHHHHHHhhcCceeEEeeecCcC---cchhHHHHHHHHH-HhCcceeeeccccchhhhhHHHHHHHhcccchhhhcc
Confidence            111    1112236777777777665   321        12 36677777777777752    2233455556677777


Q ss_pred             eecccccccCCCcc----C--CCcccCcccccCccccCC
Q 045449          284 LGENLFSGFIPNTI----G--NLRNLEFGNIADNYLTSS  316 (823)
Q Consensus       284 Ls~N~l~~~~p~~~----~--~l~~L~~L~L~~N~l~~~  316 (823)
                      +..+-++..-..++    .  ..++|..|...+|...+.
T Consensus       249 lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~  287 (388)
T COG5238         249 LNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGG  287 (388)
T ss_pred             ccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCc
Confidence            77776664332221    1  245566666666666554

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.97  E-value=1.6e-06  Score=85.81  Aligned_cols=167  Identities=17%  Similarity=0.201  Sum_probs=103.8

Q ss_pred             ccccCCCCceEEEeecCCCCccCCcccccc---ccccceEEecCCcceeccCcc-------------ccCcccccEEEcc
Q 045449          324 SSLTNCKKLKVLIVTGNPLDGILPKSIGNF---SLSLETILMANCSISGNIPQV-------------VGNLSNLLVLELG  387 (823)
Q Consensus       324 ~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~---~~~L~~L~L~~N~l~~~~p~~-------------~~~l~~L~~L~Ls  387 (823)
                      ..+-.|++|+..+||.|.|....|..++.+   +..|++|.|++|.+--.--..             ..+-+.|++++..
T Consensus        86 ~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicg  165 (388)
T COG5238          86 KALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICG  165 (388)
T ss_pred             HHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEec
Confidence            456677777777777777776666544432   256777777777664221111             2345778899999


Q ss_pred             cCcCCCCch----hcccccCCCCEEEccCCCCCCcch-----HhhhcCCCCCEEEcccCcCccccc----ccccCCCCCC
Q 045449          388 GNNLTGPIP----VTFSQLQTLQAFDLTRNKLAGPIT-----DELCHLARLHSLVLQGNKFSGSIP----SCLGNLTSVR  454 (823)
Q Consensus       388 ~N~l~g~~p----~~~~~l~~L~~L~Ls~N~l~~~~p-----~~~~~l~~L~~L~Ls~N~l~g~~p----~~~~~l~~L~  454 (823)
                      .|+|..-..    ..+..-..|+.+-+..|.|...--     ..+..+.+|+.|||+.|-|+-.-.    ..+...+.|+
T Consensus       166 rNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lr  245 (388)
T COG5238         166 RNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLR  245 (388)
T ss_pred             cchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhh
Confidence            998863221    123333578888888888863311     122446788899999998874322    2344556688


Q ss_pred             eEeccCCccccccchhhh------ccCCCcEEeccccccccc
Q 045449          455 VLYLGLNIFTSVLSSTIW------NLKDILFIDVSSNFLDGP  490 (823)
Q Consensus       455 ~L~Ls~N~l~~~~p~~~~------~l~~L~~LdLs~N~l~g~  490 (823)
                      .|.+..+-++..-..++.      ..++|+.|-..+|-..|.
T Consensus       246 EL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~  287 (388)
T COG5238         246 ELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGG  287 (388)
T ss_pred             hccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCc
Confidence            888888877654443322      246667777777766553

>cd05151 ChoK Choline Kinase (ChoK)

Probab=97.96  E-value=5.7e-06  Score=80.43  Aligned_cols=80  Identities=28%  Similarity=0.264  Sum_probs=58.4

Q ss_pred             CeEEEEEEehHhhHHHHHHHHHHHHHHhhcchhhHHH-------------------------------HHHHHHHHhhhc
Q 045449          641 GMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVK-------------------------------IISSSLEYLHFG  689 (823)
Q Consensus       641 ~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~-------------------------------~~~~~l~~L~~~  689 (823)
                      +..|++|+...... ....+.+|++++..+.+.+++.                               .+.++++.|..+
T Consensus        21 ~~~~~lK~~~~~~~-~~~~~~~E~~~l~~l~~~~~~P~~~~~~~~~~~lv~e~i~G~~l~~~~~~~~~~~~~l~~~l~~L   99 (170)
T cd05151          21 NKKYVVRIPGNGTE-LLINRENEAENSKLAAEAGIGPKLYYFDPETGVLITEFIEGSELLTEDFSDPENLEKIAKLLKKL   99 (170)
T ss_pred             CeEEEEEeCCCCcc-cccCHHHHHHHHHHHHHhCCCCceEEEeCCCCeEEEEecCCCccccccccCHHHHHHHHHHHHHH
Confidence            46799998765432 1235678888888876554432                               244666677777


Q ss_pred             CCCC-----EEeccCCCCCEEeCCCCcEEEeecccccc
Q 045449          690 HSIP-----IIHCDLKPSNVLLDEDMVAHISDFGIAKL  722 (823)
Q Consensus       690 h~~~-----ivHrdlk~~NiLl~~~~~~kl~DfGla~~  722 (823)
                      |..+     ++|+|++|.||+++ ++.++++|||.+..
T Consensus       100 H~~~~~~~~~~HgD~~~~Nil~~-~~~~~liDf~~a~~  136 (170)
T cd05151         100 HSSPLPDLVPCHNDLLPGNFLLD-DGRLWLIDWEYAGM  136 (170)
T ss_pred             hCCCCCCceeecCCCCcCcEEEE-CCeEEEEecccccC
Confidence            7776     59999999999999 56899999998875

The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC), and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. Bacterial ChoK is also referred to as licA protein. ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major ph

>KOG0606 consensus Microtubule-associated serine/threonine kinase and related proteins [Signal transduction mechanisms; General function prediction only]

Probab=97.90  E-value=1.1e-05  Score=94.22  Aligned_cols=100  Identities=26%  Similarity=0.241  Sum_probs=79.0

Q ss_pred             HHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCC---------------------C---cc-----
Q 045449          679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGE---------------------D---QL-----  729 (823)
Q Consensus       679 ~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~---------------------~---~~-----  729 (823)
                      ++.....+.++|...+.|||+||.|++...+++.+++|||........                     .   ..     
T Consensus       910 i~~~vqs~e~L~s~~r~h~~~~p~~~l~~~~gh~~l~~~~t~~~vg~~~p~~~~sg~~~~~~~~~~~~~~~~~~l~~~~~  989 (1205)
T KOG0606|consen  910 ILERVQSLESLHSSLRKHRDLKPDSLLIAYDGHRPLTDFGTLSKVGLIPPTTDLSGPSSSGTPRRLSRSERRPQLSADEA  989 (1205)
T ss_pred             hHHHHhhhhccccchhhcccccccchhhcccCCcccCccccccccccccCcCCcccccccCccccccccccccccccchh
Confidence            455566677788888999999999999999999999999843321100                     0   00     


Q ss_pred             ccccccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCC
Q 045449          730 SKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       730 ~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      .......||+.|.|||...+...+..+|+|+.|+++.+.++|..||...
T Consensus       990 ~~~~~~~~t~~~laPe~~lg~~hgs~ad~~~~g~~l~e~l~g~pp~na~ 1038 (1205)
T KOG0606|consen  990 RRKHAVVGTPDYLAPEILLGRRHGSAADWWSSGVCLFEVLTGIPPFNAE 1038 (1205)
T ss_pred             hccccccCCCcccCCcccccccCCCcchhhhhhhhhhhhhcCCCCCCCc
Confidence            1123457899999999999999999999999999999999999998664

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=97.90  E-value=3.7e-07  Score=91.48  Aligned_cols=175  Identities=18%  Similarity=0.231  Sum_probs=90.4

Q ss_pred             cCcccccCccccCCCCcccccccccCCCCceEEEeecCCCCccCCccccccccccceEEecCC-cceecc-CccccCccc
Q 045449          303 LEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGILPKSIGNFSLSLETILMANC-SISGNI-PQVVGNLSN  380 (823)
Q Consensus       303 L~~L~L~~N~l~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N-~l~~~~-p~~~~~l~~  380 (823)
                      |++|||+...++...    ...-+..|.+|+.|.|.++++...+-..+... .+|+.|+++.+ .|+..- .-.+.+++.
T Consensus       187 lq~lDLS~s~it~st----l~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN-~~L~~lnlsm~sG~t~n~~~ll~~scs~  261 (419)
T KOG2120|consen  187 LQHLDLSNSVITVST----LHGILSQCSKLKNLSLEGLRLDDPIVNTIAKN-SNLVRLNLSMCSGFTENALQLLLSSCSR  261 (419)
T ss_pred             hHHhhcchhheeHHH----HHHHHHHHHhhhhccccccccCcHHHHHHhcc-ccceeeccccccccchhHHHHHHHhhhh
Confidence            555555555544321    22235566777777777777776666666655 56777777654 333211 123556778


Q ss_pred             ccEEEcccCcCCCCchhc-ccc-cCCCCEEEccCCCC---CCcchHhhhcCCCCCEEEcccCcCcccccccccCCCCCCe
Q 045449          381 LLVLELGGNNLTGPIPVT-FSQ-LQTLQAFDLTRNKL---AGPITDELCHLARLHSLVLQGNKFSGSIPSCLGNLTSVRV  455 (823)
Q Consensus       381 L~~L~Ls~N~l~g~~p~~-~~~-l~~L~~L~Ls~N~l---~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~  455 (823)
                      |..|+|+++.++...-.. +.. -.+|+.|+|++..=   ...+..--..+++|..||||+|.                 
T Consensus       262 L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v-----------------  324 (419)
T KOG2120|consen  262 LDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSV-----------------  324 (419)
T ss_pred             HhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeecccccc-----------------
Confidence            888888888776433111 111 13566666665321   11111122344555555555443                 


Q ss_pred             EeccCCccccccchhhhccCCCcEEeccccccccccCc---cccCCCCCcEEEcc
Q 045449          456 LYLGLNIFTSVLSSTIWNLKDILFIDVSSNFLDGPLSL---DIGNLKVVIGLDFS  507 (823)
Q Consensus       456 L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~~p~---~~~~l~~L~~L~ls  507 (823)
                            .++...-..|.+++.|++|.+|.+..  .+|.   .+...+.|.+||+-
T Consensus       325 ------~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~  371 (419)
T KOG2120|consen  325 ------MLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVF  371 (419)
T ss_pred             ------ccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEec
Confidence                  12222233444555555555555542  3332   34566777777754

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.84  E-value=1e-05  Score=58.54  Aligned_cols=36  Identities=36%  Similarity=0.518  Sum_probs=16.0

Q ss_pred             CCCEEECCCCcCcCCCchhhhcCCCCcEEeccccccc
Q 045449          101 TLKLLDFSDNQLFGSLSSFIFNMSSMTTIDLSINRLS  137 (823)
Q Consensus       101 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  137 (823)
                      +|++|+|++|+|+ .+|..++++++|++|++++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            3444444444444 23334445555555555555444

...

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=97.82  E-value=3.5e-07  Score=91.65  Aligned_cols=156  Identities=22%  Similarity=0.242  Sum_probs=80.3

Q ss_pred             CccEEEeecccccc-ccCccccCCCCCCeEEeecccccccCCCccCCCcccCcccccCcc-ccCCCCcccccccccCCCC
Q 045449          254 NVETLNLGINSFSG-TIPSSITNSSKLSDLELGENLFSGFIPNTIGNLRNLEFGNIADNY-LTSSTPELSFLSSLTNCKK  331 (823)
Q Consensus       254 ~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~l~~l~~  331 (823)
                      .|++||||+-.|+. ..-..+..+.+|+.|.|.++++.+.+-..++.-.+|+.|+|+... ++..    ..---+.+|+.
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n----~~~ll~~scs~  261 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTEN----ALQLLLSSCSR  261 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchh----HHHHHHHhhhh
Confidence            36666666655542 111224455667777777777777666667666777777776543 2211    11223567777


Q ss_pred             ceEEEeecCCCCccC-CccccccccccceEEecCCcc---eeccCccccCcccccEEEcccCc-CCCCchhcccccCCCC
Q 045449          332 LKVLIVTGNPLDGIL-PKSIGNFSLSLETILMANCSI---SGNIPQVVGNLSNLLVLELGGNN-LTGPIPVTFSQLQTLQ  406 (823)
Q Consensus       332 L~~L~Ls~N~l~~~~-p~~~~~~~~~L~~L~L~~N~l---~~~~p~~~~~l~~L~~L~Ls~N~-l~g~~p~~~~~l~~L~  406 (823)
                      |..|+|+.+.+.... ...+.....+|+.|++++..-   ...+......+++|..||||.|. ++...-..|-+++.|+
T Consensus       262 L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~  341 (419)
T KOG2120|consen  262 LDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQ  341 (419)
T ss_pred             HhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchhe
Confidence            777777777665432 122233335566666665321   11111122345555555555542 3332333344455555


Q ss_pred             EEEccCC
Q 045449          407 AFDLTRN  413 (823)
Q Consensus       407 ~L~Ls~N  413 (823)
                      +|.|+.+
T Consensus       342 ~lSlsRC  348 (419)
T KOG2120|consen  342 HLSLSRC  348 (419)
T ss_pred             eeehhhh
Confidence            5555444

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.75  E-value=3.3e-05  Score=55.95  Aligned_cols=36  Identities=33%  Similarity=0.600  Sum_probs=15.5

Q ss_pred             cccEEEcccCcCCCCchhcccccCCCCEEEccCCCCC
Q 045449          380 NLLVLELGGNNLTGPIPVTFSQLQTLQAFDLTRNKLA  416 (823)
Q Consensus       380 ~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~  416 (823)
                      +|++|++++|+|+ .+|..++++++|++|++++|+|+
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            3444444444444 33333444444444444444444

...

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.74  E-value=0.00011  Score=79.67  Aligned_cols=56  Identities=11%  Similarity=0.215  Sum_probs=35.6

Q ss_pred             cCCCCCCcEEEccCCCCCCCCCCCCCCCCCCCEEECCCC-cCcCCCchhhhcCCCCcEEecccc
Q 045449           72 LGNLSSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDN-QLFGSLSSFIFNMSSMTTIDLSIN  134 (823)
Q Consensus        72 l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~Ls~N  134 (823)
                      +..+.++++|++++|.|+ .+|. +  -.+|++|+++++ .+ ..+|+.+  ..+|++|++++|
T Consensus        48 ~~~~~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nL-tsLP~~L--P~nLe~L~Ls~C  104 (426)
T PRK15386         48 IEEARASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNL-TTLPGSI--PEGLEKLTVCHC  104 (426)
T ss_pred             HHHhcCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCc-ccCCchh--hhhhhheEccCc
Confidence            444577888888888777 4451 1  235888888764 43 3455444  246777777776

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=97.66  E-value=9.1e-05  Score=83.11  Aligned_cols=128  Identities=16%  Similarity=0.170  Sum_probs=91.8

Q ss_pred             CeEEEEEEehHhhHHHHHHHHHHHHHHhhcchhhHHHH-----------------------------------HHHHHHH
Q 045449          641 GMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVKI-----------------------------------ISSSLEY  685 (823)
Q Consensus       641 ~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~-----------------------------------~~~~l~~  685 (823)
                      +.+|.|...+.......+...+-++-++.++||+|+++                                   +.|++.+
T Consensus        37 ~~~vsVF~~~~~~~~~~~~~~~A~k~lKtlRHP~Il~yL~t~e~~~~~ylvTErV~Pl~~~lk~l~~~~v~~Gl~qIl~A  116 (690)
T KOG1243|consen   37 GGPVSVFVYKRSNGEVTELAKRAVKRLKTLRHPNILSYLDTTEEEGTLYLVTERVRPLETVLKELGKEEVCLGLFQILAA  116 (690)
T ss_pred             CCceEEEEEeCCCchhhHHHHHHHHHhhhccCchhhhhhhhhcccCceEEEeeccccHHHHHHHhHHHHHHHHHHHHHHH
Confidence            56788877765544344556777888999999999993                                   4688888


Q ss_pred             hhhcC-CCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccCCCccccccceehhhhh
Q 045449          686 LHFGH-SIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII  764 (823)
Q Consensus       686 L~~~h-~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv  764 (823)
                      |-|+| +.+++|+++.-+-|.++..|+-||.+|-++..........  ....--..|..|+.+....  -..|.|-|||+
T Consensus       117 L~FL~~d~~lvHgNv~~~SVfVn~~GeWkLggle~v~~~~~~~~~~--~~~~~~~s~~~P~~~~~s~--~s~D~~~Lg~l  192 (690)
T KOG1243|consen  117 LSFLNDDCNLVHGNVCKDSVFVNESGEWKLGGLELVSKASGFNAPA--KSLYLIESFDDPEEIDPSE--WSIDSWGLGCL  192 (690)
T ss_pred             HHHHhccCCeeeccEeeeeEEEcCCCcEEEeeeEEEeccccCCccc--ccchhhhcccChhhcCccc--cchhhhhHHHH
Confidence            88886 7889999999999999999999999998876543221100  1111122456666543222  34599999999


Q ss_pred             hccccCCC
Q 045449          765 SGGKETRS  772 (823)
Q Consensus       765 ~~~~~~~~  772 (823)
                      .+++.-|.
T Consensus       193 i~el~ng~  200 (690)
T KOG1243|consen  193 IEELFNGS  200 (690)
T ss_pred             HHHHhCcc
Confidence            99988873

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.64  E-value=0.00011  Score=79.48  Aligned_cols=159  Identities=13%  Similarity=0.189  Sum_probs=77.9

Q ss_pred             CCCCceEEEeecCCCCccCCccccccccccceEEecCCcceeccCccccCcccccEEEcccC-cCCCCchhcccccCCCC
Q 045449          328 NCKKLKVLIVTGNPLDGILPKSIGNFSLSLETILMANCSISGNIPQVVGNLSNLLVLELGGN-NLTGPIPVTFSQLQTLQ  406 (823)
Q Consensus       328 ~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N-~l~g~~p~~~~~l~~L~  406 (823)
                      .+.+++.|++++|.++. +|    .+|.+|++|.++++.--..+|..+  .++|+.|++++| ++. .+|.      +|+
T Consensus        50 ~~~~l~~L~Is~c~L~s-LP----~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP~------sLe  115 (426)
T PRK15386         50 EARASGRLYIKDCDIES-LP----VLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLPE------SVR  115 (426)
T ss_pred             HhcCCCEEEeCCCCCcc-cC----CCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-cccc------ccc
Confidence            34556666666665553 23    244566666666533223445433  246677777766 443 3443      355


Q ss_pred             EEEccCCCCCC--cchHhhhcCCCCCEEEcccCc-Cc-ccccccccCCCCCCeEeccCCccccccchhhhccCCCcEEec
Q 045449          407 AFDLTRNKLAG--PITDELCHLARLHSLVLQGNK-FS-GSIPSCLGNLTSVRVLYLGLNIFTSVLSSTIWNLKDILFIDV  482 (823)
Q Consensus       407 ~L~Ls~N~l~~--~~p~~~~~l~~L~~L~Ls~N~-l~-g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdL  482 (823)
                      .|+++.|....  .+|.      +|+.|.+.+++ .. ..+|..+  -++|++|++++|.... .|..+.  .+|+.|++
T Consensus       116 ~L~L~~n~~~~L~~LPs------sLk~L~I~~~n~~~~~~lp~~L--PsSLk~L~Is~c~~i~-LP~~LP--~SLk~L~l  184 (426)
T PRK15386        116 SLEIKGSATDSIKNVPN------GLTSLSINSYNPENQARIDNLI--SPSLKTLSLTGCSNII-LPEKLP--ESLQSITL  184 (426)
T ss_pred             eEEeCCCCCcccccCcc------hHhheecccccccccccccccc--CCcccEEEecCCCccc-Cccccc--ccCcEEEe
Confidence            66666555421  2222      34555554322 11 0111111  1467777777766442 233222  46777777


Q ss_pred             ccccc------ccccCccccCCCCCcEEEcccCCCC
Q 045449          483 SSNFL------DGPLSLDIGNLKVVIGLDFSRNNLS  512 (823)
Q Consensus       483 s~N~l------~g~~p~~~~~l~~L~~L~ls~N~l~  512 (823)
                      +.|..      .+.+|..+ .+.....+.++.+.|+
T Consensus       185 s~n~~~sLeI~~~sLP~nl-~L~f~n~lkL~~~~f~  219 (426)
T PRK15386        185 HIEQKTTWNISFEGFPDGL-DIDLQNSVLLSPDVFK  219 (426)
T ss_pred             cccccccccCccccccccc-EechhhhcccCHHHhh
Confidence            76631      22455444 4444444444444444

>KOG0601 consensus Cyclin-dependent kinase WEE1 [Cell cycle control, cell division, chromosome partitioning]

Probab=97.64  E-value=3.8e-05  Score=85.26  Aligned_cols=91  Identities=24%  Similarity=0.250  Sum_probs=69.2

Q ss_pred             HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCC-CcEEEeecccccccCCCCccccccccccCCCcC--cccccCCCcccc
Q 045449          678 IISSSLEYLHFGHSIPIIHCDLKPSNVLLDED-MVAHISDFGIAKLLSGEDQLSKQTQTLATIGYM--APEYGTKGRVST  754 (823)
Q Consensus       678 ~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~-~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~--aPE~~~~~~~~~  754 (823)
                      +.+|++.+++++|++..+|+|+||+||++..+ +.-++.|||.+..+.-..     ....++.+|.  +++......+..
T Consensus       371 ~~~q~~~~l~~i~s~~~~~~d~~psni~i~~~~~~~~~~~~~~~t~~~~~~-----~~~~~~~r~~p~~~~~~e~~~~~~  445 (524)
T KOG0601|consen  371 LTAQILTALNVIHSKLFVHLDVKPSNILISNDGFFSKLGDFGCWTRLAFSS-----GVFHHIDRLYPIAEILLEDYPHLS  445 (524)
T ss_pred             hHHHHHhccccccchhhhcccccccceeeccchhhhhccccccccccceec-----ccccccccccccchhhcccccccc
Confidence            45789999999999999999999999999876 788999999987532111     1122333444  555566677899


Q ss_pred             ccceehhhhhhccccCCCC
Q 045449          755 RGDVCSFGIISGGKETRSM  773 (823)
Q Consensus       755 ~~Dv~S~Gvv~~~~~~~~~  773 (823)
                      +.|++|||.-..+..++..
T Consensus       446 ~~~~~sl~~~~~e~~~~~~  464 (524)
T KOG0601|consen  446 KADIFSLGLSVDEAITGSP  464 (524)
T ss_pred             ccccccccccccccccCcc
Confidence            9999999988777777664

>PRK04750 ubiB putative ubiquinone biosynthesis protein UbiB; Reviewed

Probab=97.59  E-value=0.00014  Score=82.70  Aligned_cols=42  Identities=26%  Similarity=0.381  Sum_probs=35.7

Q ss_pred             HhhhcCCCCEEeccCCCCCEEeCCCC----cEEEeecccccccCCC
Q 045449          685 YLHFGHSIPIIHCDLKPSNVLLDEDM----VAHISDFGIAKLLSGE  726 (823)
Q Consensus       685 ~L~~~h~~~ivHrdlk~~NiLl~~~~----~~kl~DfGla~~~~~~  726 (823)
                      |+..++..|++|+|+||.||+++.++    .+++.|||++..+...
T Consensus       272 ~~~Qif~~GffHaDpHPGNIlv~~~g~~~~~i~llDFGivg~l~~~  317 (537)
T PRK04750        272 FFTQVFRDGFFHADMHPGNIFVSYDPPENPRYIALDFGIVGSLNKE  317 (537)
T ss_pred             HHHHHHhCCeeeCCCChHHeEEecCCCCCCeEEEEecceEEECCHH
Confidence            44555678999999999999999887    9999999999877543

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.55  E-value=9.6e-05  Score=70.71  Aligned_cols=87  Identities=24%  Similarity=0.346  Sum_probs=58.2

Q ss_pred             CCCccEEEeeccccccccCccccCCCCCCeEEeecccccccCCCccCCCcccCcccccCccccCCCCcccccccccCCCC
Q 045449          252 LPNVETLNLGINSFSGTIPSSITNSSKLSDLELGENLFSGFIPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKK  331 (823)
Q Consensus       252 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~l~~  331 (823)
                      +.+...+||+.|.+.  --+.|..++.|.+|.|++|+|+.+-|..-.-+++|..|.|.+|++....    ....+..|++
T Consensus        41 ~d~~d~iDLtdNdl~--~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~----dl~pLa~~p~  114 (233)
T KOG1644|consen   41 LDQFDAIDLTDNDLR--KLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELG----DLDPLASCPK  114 (233)
T ss_pred             ccccceecccccchh--hcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhh----hcchhccCCc
Confidence            445666777777765  2234666777777777777777666665556677777777777776542    2345667777


Q ss_pred             ceEEEeecCCCCc
Q 045449          332 LKVLIVTGNPLDG  344 (823)
Q Consensus       332 L~~L~Ls~N~l~~  344 (823)
                      |++|.+-+|....
T Consensus       115 L~~Ltll~Npv~~  127 (233)
T KOG1644|consen  115 LEYLTLLGNPVEH  127 (233)
T ss_pred             cceeeecCCchhc
Confidence            7777777777653

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.42  E-value=0.00021  Score=68.37  Aligned_cols=83  Identities=20%  Similarity=0.208  Sum_probs=43.2

Q ss_pred             cccEEEcccCcCCCCchhcccccCCCCEEEccCCCCCCcchHhhhcCCCCCEEEcccCcCcccc-cccccCCCCCCeEec
Q 045449          380 NLLVLELGGNNLTGPIPVTFSQLQTLQAFDLTRNKLAGPITDELCHLARLHSLVLQGNKFSGSI-PSCLGNLTSVRVLYL  458 (823)
Q Consensus       380 ~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~-p~~~~~l~~L~~L~L  458 (823)
                      +...+||++|.+. .+ ..|..++.|.+|.|++|+|+.+-|.--.-+++|..|.|.+|+|.... -.-+..++.|++|.+
T Consensus        43 ~~d~iDLtdNdl~-~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl  120 (233)
T KOG1644|consen   43 QFDAIDLTDNDLR-KL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL  120 (233)
T ss_pred             ccceecccccchh-hc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence            4556666666664 22 23555666666666666666554444344455666666666654211 011334444444444


Q ss_pred             cCCccc
Q 045449          459 GLNIFT  464 (823)
Q Consensus       459 s~N~l~  464 (823)
                      -+|..+
T Consensus       121 l~Npv~  126 (233)
T KOG1644|consen  121 LGNPVE  126 (233)
T ss_pred             cCCchh
Confidence            444443

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]

Probab=97.28  E-value=0.00019  Score=80.94  Aligned_cols=87  Identities=18%  Similarity=0.303  Sum_probs=65.2

Q ss_pred             HHHhhhcC-CCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCcccc-------ccccccCCCcCcccccCCCcccc
Q 045449          683 LEYLHFGH-SIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSK-------QTQTLATIGYMAPEYGTKGRVST  754 (823)
Q Consensus       683 l~~L~~~h-~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~-------~~~~~gt~~y~aPE~~~~~~~~~  754 (823)
                      .+++.+.| +.++||++|.|++|.+++.+..|++-|+++....+...+..       ..-..-...|.|||++.....+.
T Consensus       109 ~dgl~flh~sAk~VH~ni~p~~i~~na~~~wkl~Gf~f~v~~~~~~~~p~~~yd~~lp~~~~~~~~f~apE~~~~~~~~~  188 (700)
T KOG2137|consen  109 ADGLAFLHRSAKVVHGNIQPEAIVVNANGDWKLAGFSFCVNANGPTEYPFSEYDPPLPLLLQPHLNFLAPEYLLGTTNTP  188 (700)
T ss_pred             cchhhhhccCcceeecccchhheeeccCcceeeccchhhhccCCCCccccccCCCCCChhhccCcccccchhhccccccc
Confidence            34455555 46899999999999999999999999998766544211111       11112356899999999888899


Q ss_pred             ccceehhhhhhcccc
Q 045449          755 RGDVCSFGIISGGKE  769 (823)
Q Consensus       755 ~~Dv~S~Gvv~~~~~  769 (823)
                      ++|+||+||+.|-.-
T Consensus       189 ~sd~fSlG~li~~i~  203 (700)
T KOG2137|consen  189 ASDVFSLGVLIYTIY  203 (700)
T ss_pred             cccceeeeeEEEEEe
Confidence            999999999977665

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	823
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		7e-34
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		9e-33
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		1e-18
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		4e-11
2qkw_B	321	Structural Basis For Activation Of Plant Immunity B		2e-13
3pwy_A	311	Crystal Structure Of An Extender (Spd28345)-Modifie		8e-13
3tl8_A	349	The Avrptob-Bak1 Complex Reveals Two Structurally S		9e-13
3hgk_A	327	Crystal Structure Of Effect Protein Avrptob Complex		1e-12
4a07_A	311	Human Pdk1 Kinase Domain In Complex With Allosteric		3e-12
3qc4_A	314	Pdk1 In Complex With Dfg-Out Inhibitor Xxx Length =		3e-12
1h1w_A	289	High Resolution Crystal Structure Of The Human Pdk1		3e-12
3hrc_A	311	Crystal Structure Of A Mutant Of Human Pdk1 Kinase		3e-12
3rwp_A	311	Discovery Of A Novel, Potent And Selective Inhibito		3e-12
1uu3_A	310	Structure Of Human Pdk1 Kinase Domain In Complex Wi		3e-12
2r7b_A	312	Crystal Structure Of The Phosphoinositide-Dependent		3e-12
2xck_A	309	Crystal Structure Of Pdk1 In Complex With A Pyrazol		3e-12
2biy_A	310	Structure Of Pdk1-S241a Mutant Kinase Domain Length		3e-12
3h9o_A	311	Phosphoinositide-Dependent Protein Kinase 1 (Pdk-1)		3e-12
3sc1_A	311	Novel Isoquinolone Pdk1 Inhibitors Discovered Throu		3e-12
2xch_A	309	Crystal Structure Of Pdk1 In Complex With A Pyrazol		3e-12
3iop_A	312	Pdk-1 In Complex With The Inhibitor Compound-8i Len		3e-12
1z5m_A	286	Crystal Structure Of N1-[3-[[5-bromo-2-[[3-[(1-pyrr		4e-12
3nus_A	286	Phosphoinositide-Dependent Kinase-1 (Pdk1) With Fra		4e-12
3nay_A	311	Pdk1 In Complex With Inhibitor Mp6 Length = 311		4e-12
3nax_A	311	Pdk1 In Complex With Inhibitor Mp7 Length = 311		4e-12
1uu9_A	286	Structure Of Human Pdk1 Kinase Domain In Complex Wi		4e-12
3orx_A	316	Pdk1 Mutant Bound To Allosteric Disulfide Fragment		4e-12
3nun_A	292	Phosphoinositide-Dependent Kinase-1 (Pdk1) With Lea		4e-12
3uim_A	326	Structural Basis For The Impact Of Phosphorylation		1e-11
2nry_A	307	Crystal Structure Of Irak-4 Length = 307		6e-10
2oib_A	301	Crystal Structure Of Irak4 Kinase Domain Apo Form L		9e-10
2nru_A	307	Crystal Structure Of Irak-4 Length = 307		1e-09
3orm_A	311	Mycobacterium Tuberculosis Pknb Kinase Domain D76a		2e-09
1mru_A	311	Intracellular SerTHR PROTEIN KINASE DOMAIN OF Mycob		2e-09
3ori_A	311	Mycobacterium Tuberculosis Pknb Kinase Domain L33d		2e-09
3f61_A	311	Crystal Structure Of M. Tuberculosis Pknb Leu33aspV		2e-09
3u4w_A	275	Src In Complex With Dna-Templated Macrocyclic Inhib		2e-09
3d7u_B	277	Structural Basis For The Recognition Of C-Src By It		3e-09
1o6y_A	299	Catalytic Domain Of Pknb Kinase From Mycobacterium		3e-09
3dqw_A	286	C-Src Kinase Domain Thr338ile Mutant In Complex Wit		3e-09
2oiq_A	286	Crystal Structure Of Chicken C-Src Kinase Domain In		3e-09
1yi6_A	276	C-Term Tail Segment Of Human Tyrosine Kinase (258-5		3e-09
3oez_A	286	Crystal Structure Of The L317i Mutant Of The Chicke		3e-09
3g6h_A	286	Src Thr338ile Inhibited In The Dfg-Asp-Out Conforma		3e-09
2qq7_A	286	Crystal Structure Of Drug Resistant Src Kinase Doma		3e-09
2hwo_A	286	Crystal Structure Of Src Kinase Domain In Complex W		3e-09
3svv_A	286	Crystal Structure Of T338c C-Src Covalently Bound T		3e-09
1ksw_A	452	Structure Of Human C-Src Tyrosine Kinase (Thr338gly		3e-09
1fmk_A	452	Crystal Structure Of Human Tyrosine-Protein Kinase		3e-09
1y57_A	452	Structure Of Unphosphorylated C-Src In Complex With		3e-09
2o8y_A	298	Apo Irak4 Kinase Domain Length = 298		4e-09
2bdf_A	279	Src Kinase In Complex With Inhibitor Ap23451 Length		4e-09
2h8h_A	535	Src Kinase In Complex With A Quinazoline Inhibitor		4e-09
1yoj_A	283	Crystal Structure Of Src Kinase Domain Length = 283		4e-09
1yol_A	283	Crystal Structure Of Src Kinase Domain In Complex W		5e-09
3f69_A	311	Crystal Structure Of The Mycobacterium Tuberculosis		5e-09
3geq_A	286	Structural Basis For The Chemical Rescue Of Src Kin		7e-09
4eqm_A	294	Structural Analysis Of Staphylococcus Aureus Serine		8e-09
2ptk_A	453	Chicken Src Tyrosine Kinase Length = 453		8e-09
2dq7_X	283	Crystal Structure Of Fyn Kinase Domain Complexed Wi		4e-08
1a06_A	332	Calmodulin-Dependent Protein Kinase From Rat Length		7e-08
4fg9_A	320	Crystal Structure Of Human Calcium/calmodulin-depen		8e-08
4fr4_A	384	Crystal Structure Of Human SerineTHREONINE-Protein		8e-08
4fg8_A	315	Crystal Structure Of Human Calcium/calmodulin-depen		8e-08
4fg7_A	293	Crystal Structure Of Human Calcium/calmodulin-depen		9e-08
2zv2_A	298	Crystal Structure Of Human CalciumCALMODULIN-Depend		9e-08
3rzf_A	677	Crystal Structure Of Inhibitor Of Kappab Kinase Bet		1e-07
3qa8_A	676	Crystal Structure Of Inhibitor Of Kappa B Kinase Be		1e-07
3ubd_A	304	Structure Of N-Terminal Domain Of Rsk2 Kinase In Co		2e-07
4el9_A	305	Structure Of N-Terminal Kinase Domain Of Rsk2 With		2e-07
3g51_A	325	Structural Diversity Of The Active Conformation Of		2e-07
2z7q_A	321	Crystal Structure Of The N-Terminal Kinase Domain O		3e-07
1yhv_A	297	Crystal Structure Of Pak1 Kinase Domain With Two Po		3e-07
3ii5_A	306	The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimi		3e-07
3d4q_A	307	Pyrazole-Based Inhibitors Of B-Raf Kinase Length =		3e-07
1uwh_A	276	The Complex Of Wild Type B-Raf And Bay439006 Length		3e-07
3q96_A	282	B-Raf Kinase Domain In Complex With A Tetrahydronap		3e-07
4h58_A	275	Braf In Complex With Compound 3 Length = 275		3e-07
2fb8_A	281	Structure Of The B-Raf Kinase Domain Bound To Sb-59		3e-07
4dbn_A	284	Crystal Structure Of The Kinase Domain Of Human B-R		3e-07
3tub_A	293	Crystal Structure Of Syk Kinase Domain With 1-(5-(6		4e-07
3vf8_A	299	Crystal Structure Of Spleen Tyrosine Kinase Syk Cat		4e-07
3srv_B	277	Crystal Structure Of Spleen Tyrosine Kinase (Syk) I		4e-07
3emg_A	291	Discovery And Sar Of Novel 4-Thiazolyl-2- Phenylami		4e-07
1xba_A	291	Crystal Structure Of Apo Syk Tyrosine Kinase Domain		4e-07
3srv_A	277	Crystal Structure Of Spleen Tyrosine Kinase (Syk) I		5e-07
3fxz_A	297	Crystal Structure Of Pak1 Kinase Domain With Ruthen		5e-07
3q52_A	306	Structure Of Phosphorylated Pak1 Kinase Domain Leng		6e-07
3ugc_A	295	Structural Basis Of Jak2 Inhibition By The Type Ii		6e-07
2xa4_A	298	Inhibitors Of Jak2 Kinase Domain Length = 298		6e-07
1f3m_C	297	Crystal Structure Of Human SerineTHREONINE KINASE P		7e-07
3ppz_A	309	Crystal Structure Of Ctr1 Kinase Domain In Complex		7e-07
4fl3_A	635	Structural And Biophysical Characterization Of The		7e-07
2w1i_A	326	Structure Determination Of Aurora Kinase In Complex		7e-07
4g9r_A	307	B-Raf V600e Kinase Domain Bound To A Type Ii Dihydr		7e-07
3q32_A	301	Structure Of Janus Kinase 2 With A Pyrrolotriazine		7e-07
3idp_A	300	B-Raf V600e Kinase Domain In Complex With An Aminoi		7e-07
3rvg_A	303	Crystals Structure Of Jak2 With A 1-Amino-5h-Pyrido		7e-07
2y7j_A	365	Structure Of Human Phosphorylase Kinase, Gamma 2 Le		8e-07
3lpb_A	295	Crystal Structure Of Jak2 Complexed With A Potent 2		8e-07
3jy9_A	311	Janus Kinase 2 Inhibitors Length = 311		8e-07
3io7_A	313	2-Aminopyrazolo[1,5-A]pyrimidines As Potent And Sel		8e-07
4fl2_A	636	Structural And Biophysical Characterization Of The		8e-07
1uwj_A	276	The Complex Of Mutant V599e B-raf And Bay439006 Len		8e-07
3e62_A	293	Fragment Based Discovery Of Jak-2 Inhibitors Length		8e-07
4hge_A	300	Jak2 Kinase (Jh1 Domain) In Complex With Compound 8		8e-07
3tjc_A	298	Co-Crystal Structure Of Jak2 With Thienopyridine 8		8e-07
4aqc_A	301	Triazolopyridine-Based Inhibitor Of Janus Kinase 2		8e-07
2b7a_A	293	The Structural Basis Of Janus Kinase 2 Inhibition B		9e-07
4e4m_A	302	Jak2 Kinase (Jh1 Domain) In Complex With Compound 3		9e-07
1byg_A	278	Kinase Domain Of Human C-Terminal Src Kinase (Csk)		1e-06
3igo_A	486	Crystal Structure Of Cryptosporidium Parvum Cdpk1,		1e-06
1k9a_A	450	Crystal Structure Analysis Of Full-Length Carboxyl-		1e-06
3com_A	314	Crystal Structure Of Mst1 Kinase Length = 314		1e-06
3d7u_A	263	Structural Basis For The Recognition Of C-Src By It		1e-06
3tt0_A	382	Co-Structure Of Fibroblast Growth Factor Receptor 1		1e-06
3c4f_A	302	Fgfr Tyrosine Kinase Domain In Complex With 3-(3- M		1e-06
3gqi_A	326	Crystal Structure Of Activated Receptor Tyrosine Ki		1e-06
4f63_A	309	Crystal Structure Of Human Fibroblast Growth Factor		2e-06
2wei_A	287	Crystal Structure Of The Kinase Domain Of Cryptospo		2e-06
3rhx_B	306	Crystal Structure Of The Catalytic Domain Of Fgfr1		2e-06
1fgk_A	310	Crystal Structure Of The Tyrosine Kinase Domain Of		2e-06
3js2_A	317	Crystal Structure Of Minimal Kinase Domain Of Fibro		2e-06
4gt4_A	308	Structure Of Unliganded, Inactive Ror2 Kinase Domai		2e-06
3kxx_A	317	Structure Of The Mutant Fibroblast Growth Factor Re		2e-06
3gql_A	326	Crystal Structure Of Activated Receptor Tyrosine Ki		2e-06
3dk3_A	293	Crystal Structure Of Mutant Abl Kinase Domain In Co		2e-06
3dfa_A	286	Crystal Structure Of Kinase Domain Of Calcium-depen		2e-06
3zzw_A	289	Crystal Structure Of The Kinase Domain Of Ror2 Leng		2e-06
3qrj_A	277	The Crystal Structure Of Human Abl1 Kinase Domain T		2e-06
3qri_A	277	The Crystal Structure Of Human Abl1 Kinase Domain I		2e-06
3d7t_A	269	Structural Basis For The Recognition Of C-Src By It		2e-06
2jc6_A	334	Crystal Structure Of Human Calmodulin-Dependent Pro		2e-06
2hzi_A	277	Abl Kinase Domain In Complex With Pd180970 Length =		2e-06
3pyy_A	298	Discovery And Characterization Of A Cell-Permeable,		2e-06
3oxz_A	284	Crystal Structure Of Abl Kinase Domain Bound With A		2e-06
2e2b_A	293	Crystal Structure Of The C-Abl Kinase Domain In Com		2e-06
2z60_A	288	Crystal Structure Of The T315i Mutant Of Abl Kinase		2e-06
2qoh_A	288	Crystal Structure Of Abl Kinase Bound With Ppy-a Le		2e-06
1fpu_A	293	Crystal Structure Of Abl Kinase Domain In Complex W		2e-06
2hiw_A	287	Crystal Structure Of Inactive Conformation Abl Kina		2e-06
2g1t_A	287	A Src-Like Inactive Conformation In The Abl Tyrosin		2e-06
2gqg_A	278	X-Ray Crystal Structure Of Dasatinib (Bms-354825) B		2e-06
3oy3_A	284	Crystal Structure Of Abl T315i Mutant Kinase Domain		2e-06
2v7a_A	286	Crystal Structure Of The T315i Abl Mutant In Comple		2e-06
3dk6_A	293	Crystal Structure Of Mutant Abl Kinase Domain In Co		3e-06
3c4c_A	280	B-Raf Kinase In Complex With Plx4720 Length = 280		3e-06
4e6d_A	298	Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex W		3e-06
3q4z_A	306	Structure Of Unphosphorylated Pak1 Kinase Domain Le		3e-06
3dk7_A	277	Crystal Structure Of Mutant Abl Kinase Domain In Co		3e-06
3qgw_A	286	Crystal Structure Of Itk Kinase Bound To An Inhibit		3e-06
1sm2_A	264	Crystal Structure Of The Phosphorylated Interleukin		3e-06
4hct_A	269	Crystal Structure Of Itk In Complex With Compound 5		3e-06
3v5j_A	266	Crystal Structure Of Interleukin-2 Inducible T-Cell		3e-06
3t9t_A	267	Crystal Structure Of Btk Mutant (F435t,K596r) Compl		3e-06
3miy_A	266	X-Ray Crystal Structure Of Itk Complexed With Sunit		3e-06
3g33_A	308	Crystal Structure Of Cdk4CYCLIN D3 Length = 308		3e-06
3gvu_A	292	The Crystal Structure Of Human Abl2 In Complex With		3e-06
4bbe_A	298	Aminoalkylpyrimidine Inhibitor Complexes With Jak2		3e-06
3ggf_A	301	Crystal Structure Of Human SerineTHREONINE-Protein		3e-06
4b99_A	398	Crystal Structure Of Mapk7 (Erk5) With Inhibitor Le		3e-06
2pzr_A	324	Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase D		3e-06
4a4x_A	279	Nek2-Ede Bound To Cct248662 Length = 279		4e-06
2f4j_A	287	Structure Of The Kinase Domain Of An Imatinib-Resis		4e-06
2hyy_A	273	Human Abl Kinase Domain In Complex With Imatinib (S		4e-06
2hz0_A	270	Abl Kinase Domain In Complex With Nvp-Aeg082 Length		4e-06
2q0b_A	324	Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase D		4e-06
2g2f_A	287	A Src-Like Inactive Conformation In The Abl Tyrosin		4e-06
4f4p_A	273	Syk In Complex With Ligand Lasw836 Length = 273		4e-06
4dfl_A	274	Crystal Structure Of Spleen Tyrosine Kinase Complex		4e-06
3ri1_A	313	Crystal Structure Of The Catalytic Domain Of Fgfr2		4e-06
2psq_A	370	Crystal Structure Of Unphosphorylated Unactivated W		4e-06
2py3_A	324	Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase D		4e-06
1gjo_A	316	The Fgfr2 Tyrosine Kinase Domain Length = 316		4e-06
2pvf_A	334	Crystal Structure Of Tyrosine Phosphorylated Activa		4e-06
4ic7_A	442	Crystal Structure Of The Erk5 Kinase Domain In Comp		4e-06
3b2t_A	311	Structure Of Phosphotransferase Length = 311		4e-06
3cly_A	334	Crystal Structure Of Fgf Receptor 2 (Fgfr2) Kinase		5e-06
2pzp_A	324	Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase D		5e-06
2pwl_A	324	Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase D		5e-06
2pz5_A	324	Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase D		5e-06
3p86_A	309	Crystal Structure Of Ctr1 Kinase Domain Mutant D676		5e-06
2ivs_A	314	Crystal Structure Of Non-Phosphorylated Ret Tyrosin		5e-06
3ckx_A	304	Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3		5e-06
3a7f_A	303	Human Mst3 Kinase Length = 303		5e-06
2ivt_A	314	Crystal Structure Of Phosphorylated Ret Tyrosine Ki		6e-06
1k3a_A	299	Structure Of The Insulin-Like Growth Factor 1 Recep		6e-06
2phk_A	277	The Crystal Structure Of A Phosphorylase Kinase Pep		6e-06
3ckw_A	304	Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3		6e-06
3lvp_A	336	Crystal Structure Of Bisphosphorylated Igf1-R Kinas		6e-06
3i81_A	315	Crystal Structure Of Insulin-Like Growth Factor 1 R		6e-06
3zhp_C	294	Human Mst3 (stk24) In Complex With Mo25beta Length		6e-06
2zm3_A	308	Complex Structure Of Insulin-Like Growth Factor Rec		6e-06
2ivv_A	314	Crystal Structure Of Phosphorylated Ret Tyrosine Ki		7e-06
1p4o_A	322	Structure Of Apo Unactivated Igf-1r Kinase Domain A		7e-06
3qqu_A	301	Cocrystal Structure Of Unphosphorylated Igf With Py		7e-06
3o23_A	305	Human Unphosphorylated Igf1-R Kinase Domain In Comp		7e-06
1m7n_A	322	Crystal Structure Of Unactivated Apo Insulin-Like G		7e-06
1phk_A	298	Two Structures Of The Catalytic Domain Of Phosphory		7e-06
3og7_A	289	B-Raf Kinase V600e Oncogenic Mutant In Complex With		7e-06
4fk3_A	292	B-Raf Kinase V600e Oncogenic Mutant In Complex With		7e-06
2fo0_A	495	Organization Of The Sh3-Sh2 Unit In Active And Inac		7e-06
3lw0_A	304	Igf-1rk In Complex With Ligand Msc1609119a-1 Length		8e-06
3bys_A	277	Co-Crystal Structure Of Lck And Aminopyrimidine Ami		8e-06
3kmm_A	288	Structure Of Human Lck Kinase With A Small Molecule		8e-06
1opk_A	495	Structural Basis For The Auto-Inhibition Of C-Abl T		8e-06
2zm1_A	285	Crystal Structure Of Imidazo Pyrazin 1 Bound To The		8e-06
1jqh_A	308	Igf-1 Receptor Kinase Domain Length = 308		8e-06
1qpe_A	279	Structural Analysis Of The Lymphocyte-Specific Kina		8e-06
2oj9_A	307	Structure Of Igf-1r Kinase Domain Complexed With A		8e-06
2ofv_A	277	Crystal Structure Of Aminoquinazoline 1 Bound To Lc		8e-06
1qpd_A	279	Structural Analysis Of The Lymphocyte-specific Kina		8e-06
3kxz_A	287	The Complex Crystal Structure Of Lck With A Probe M		8e-06
3cd3_A	377	Crystal Structure Of Phosphorylated Human Feline Sa		8e-06
2dyl_A	318	Crystal Structure Of Human Mitogen-Activated Protei		8e-06
1opl_A	537	Structural Basis For The Auto-Inhibition Of C-Abl T		9e-06
3bkb_A	377	Crystal Structure Of Human Feline Sarcoma Viral Onc		9e-06
2w99_B	306	Crystal Structure Of Cdk4 In Complex With A D-Type		9e-06
3i7c_A	484	Calcium-Dependent Protein Kinase 1 From Toxoplasma		1e-05
3dak_A	290	Crystal Structure Of Domain-Swapped Osr1 Kinase Dom		1e-05
2pl0_A	289	Lck Bound To Imatinib Length = 289		1e-05
2vwi_A	303	Structure Of The Osr1 Kinase, A Hypertension Drug T		1e-05
3dtc_A	271	Crystal Structure Of Mixed-Lineage Kinase Mlk1 Comp		1e-05
3lxn_A	318	Structural And Thermodynamic Characterization Of Th		1e-05
3uiu_A	306	Crystal Structure Of Apo-Pkr Kinase Domain Length =		1e-05
3a4o_X	286	Lyn Kinase Domain Length = 286		1e-05
3hng_A	360	Crystal Structure Of Vegfr1 In Complex With N-(4-ch		1e-05
3i79_A	484	Calcium-Dependent Protein Kinase 1 From Toxoplasma		1e-05
3is5_A	285	Crystal Structure Of Cdpk Kinase Domain From Toxopl		1e-05
3lij_A	494	Crystal Structure Of Full Length Cpcdpk3 (Cgd5_820)		1e-05
3ku2_A	507	Crystal Structure Of Inactivated Form Of Cdpk1 From		1e-05
3hx4_A	508	Crystal Structure Of Cdpk1 Of Toxoplasma Gondii, Tg		1e-05
3ma6_A	298	Crystal Structure Of Kinase Domain Of Tgcdpk1 In Pr		1e-05
2w96_B	306	Crystal Structure Of Cdk4 In Complex With A D-Type		1e-05
1mqb_A	333	Crystal Structure Of Ephrin A2 (Epha2) Receptor Pro		2e-05
1ql6_A	298	The Catalytic Mechanism Of Phosphorylase Kinase Pro		2e-05
3d94_A	301	Crystal Structure Of The Insulin-Like Growth Factor		2e-05
2pvy_A	324	Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase D		2e-05
3omv_A	307	Crystal Structure Of C-Raf (Raf-1) Length = 307		2e-05
2yza_A	276	Crystal Structure Of Kinase Domain Of Human 5'-Amp-		2e-05
3c4x_A	543	Crystal Structure Of G Protein Coupled Receptor Kin		2e-05
3c4w_A	543	Crystal Structure Of G Protein Coupled Receptor Kin		2e-05
3t8o_A	543	Rhodopsin Kinase (grk1) L166k Mutant At 2.5a Resolu		2e-05
1ir3_A	306	Phosphorylated Insulin Receptor Tyrosine Kinase In		2e-05
1qcf_A	454	Crystal Structure Of Hck In Complex With A Src Fami		2e-05
3lck_A	271	The Kinase Domain Of Human Lymphocyte Kinase (Lck),		2e-05
3bym_A	272	X-Ray Co-Crystal Structure Aminobenzimidazole Triaz		2e-05
2ofu_A	273	X-Ray Crystal Structure Of 2-Aminopyrimidine Carbam		2e-05
4g31_A	299	Crystal Structure Of Gsk6414 Bound To Perk (R587-R1		2e-05
2z8c_A	303	Phosphorylated Insulin Receptor Tyrosine Kinase In		2e-05
3qc9_A	543	Crystal Structure Of Cross-Linked Bovine Grk1 T8cN4		2e-05
1rqq_A	306	Crystal Structure Of The Insulin Receptor Kinase In		2e-05
3gen_A	283	The 1.6 A Crystal Structure Of Human Bruton's Tyros		2e-05
1ua2_A	346	Crystal Structure Of Human Cdk7 Length = 346		2e-05
2xik_A	294	Structure Of Human Ysk1 (Yeast Sps1-Ste20-Related K		2e-05
1irk_A	306	Crystal Structure Of The Tyrosine Kinase Domain Of		2e-05
2c30_A	321	Crystal Structure Of The Human P21-Activated Kinase		2e-05
2h6d_A	276	Protein Kinase Domain Of The Human 5'-Amp-Activated		2e-05
3sxr_A	268	Crystal Structure Of Bmx Non-Receptor Tyrosine Kina		2e-05
2f7e_E	351	Pka Complexed With (S)-2-(1h-Indol-3-Yl)-1-(5-Isoqu		2e-05
3eta_A	317	Kinase Domain Of Insulin Receptor Complexed With A		2e-05
3fhi_A	350	Crystal Structure Of A Complex Between The Catalyti		2e-05
4gg5_A	319	Crystal Structure Of Cmet In Complex With Novel Inh		2e-05
2of2_A	271	Crystal Structure Of Furanopyrimidine 8 Bound To Lc		2e-05
2og8_A	265	Crystal Structure Of Aminoquinazoline 36 Bound To L		2e-05
3q6u_A	308	Structure Of The Apo Met Receptor Kinase In The Dua		2e-05
2wd1_A	292	Human C-Met Kinase In Complex With Azaindole Inhibi		2e-05
2zoq_A	382	Structural Dissection Of Human Mitogen-Activated Ki		2e-05
2eva_A	307	Structural Basis For The Interaction Of Tak1 Kinase		2e-05
2hk5_A	270	Hck Kinase In Complex With Lck Targetted Inhibitor		2e-05
2jav_A	279	Human Kinase With Pyrrole-Indolinone Ligand Length		2e-05
2uzt_A	336	Pka Structures Of Akt, Indazole-Pyridine Inhibitors		3e-05
3gp0_A	348	Crystal Structure Of Human Mitogen Activated Protei		3e-05
2w5a_A	279	Human Nek2 Kinase Adp-Bound Length = 279		3e-05
1bi8_A	326	Mechanism Of G1 Cyclin Dependent Kinase Inhibition		3e-05
3i5n_A	309	Crystal Structure Of C-Met With Triazolopyridazine		3e-05
2w9f_B	306	Crystal Structure Of Cdk4 In Complex With A D-Type		3e-05
2rfn_A	310	X-ray Structure Of C-met With Inhibitor. Length = 3		3e-05
4gs6_A	315	Irreversible Inhibition Of Tak1 Kinase By 5z-7-oxoz		3e-05
2wgj_A	306	X-Ray Structure Of Pf-02341066 Bound To The Kinase		3e-05
2oo8_X	317	Synthesis, Structural Analysis, And Sar Studies Of		3e-05
3gc9_A	370	The Structure Of P38beta C119s, C162s In Complex Wi		3e-05
1jpa_A	312	Crystal Structure Of Unphosphorylated Ephb2 Recepto		3e-05
3gc8_A	370	The Structure Of P38beta C162s In Complex With A Di		3e-05
4fux_A	360	Crystal Structure Of The Erk2 Complexed With E75 Le		3e-05
3mn3_A	271	An Inhibited Conformation For The Protein Kinase Do		3e-05
3f66_A	298	Human C-Met Kinase In Complex With Quinoxaline Inhi		3e-05
3q6w_A	307	Structure Of Dually-phosphorylated Met Receptor Kin		3e-05
3lq8_A	302	Structure Of The Kinase Domain Of C-Met Bound To Xl		3e-05
1fot_A	318	Structure Of The Unliganded Camp-Dependent Protein		3e-05
1fvr_A	327	Tie2 Kinase Domain Length = 327		3e-05
3nup_A	307	Cdk6 (Monomeric) In Complex With Inhibitor Length =		3e-05
2g15_A	318	Structural Characterization Of Autoinhibited C-Met		3e-05
3qyw_A	364	Crystal Structure Of Erk2 In Complex With An Inhibi		3e-05
3sa0_A	360	Complex Of Erk2 With Norathyriol Length = 360		3e-05
1luf_A	343	Crystal Structure Of The Musk Tyrosine Kinase: Insi		3e-05
2y94_A	476	Structure Of An Active Form Of Mammalian Ampk Lengt		3e-05
4gsb_A	364	Monoclinic Crystal Form Of The Apo-Erk2 Length = 36		3e-05
1jow_B	308	Crystal Structure Of A Complex Of Human Cdk6 And A		3e-05
3dae_A	283	Crystal Structure Of Phosphorylated Snf1 Kinase Dom		3e-05
2fst_X	367	Mitogen Activated Protein Kinase P38alpha (d176a+f3		3e-05
4fv7_A	360	Crystal Structure Of The Erk2 Complexed With E94 Le		3e-05
3e92_A	371	Crystal Structure Of P38 Kinase In Complex With A B		3e-05
3d83_A	360	Crystal Structure Of P38 Kinase In Complex With A B		3e-05
2fh9_A	274	Structure And Dimerization Of The Kinase Domain Fro		3e-05
2fsl_X	367	Mitogen Activated Protein Kinase P38alpha (D176a+f3		3e-05
3o71_A	358	Crystal Structure Of Erk2DCC PEPTIDE COMPLEX Length		3e-05
2fso_X	367	Mitogen Activated Protein Kinase P38alpha (D176a) A		3e-05
4fv6_A	360	Crystal Structure Of The Erk2 Complexed With E57 Le		3e-05
3hyh_A	275	Crystal Structure Of The Protein Kinase Domain Of Y		3e-05
1gol_A	364	Coordinates Of Rat Map Kinase Erk2 With An Arginine		4e-05
3k54_A	283	Structures Of Human Bruton's Tyrosine Kinase In Act		4e-05
2gu8_A	337	Discovery Of 2-pyrimidyl-5-amidothiophenes As Novel		4e-05
1wzy_A	368	Crystal Structure Of Human Erk2 Complexed With A Py		4e-05
2bal_A	365	P38alpha Map Kinase Bound To Pyrazoloamine Length =		4e-05
2baq_A	365	P38alpha Bound To Ro3201195 Length = 365		4e-05
1tvo_A	368	The Structure Of Erk2 In Complex With A Small Molec		4e-05
3zu7_A	365	Crystal Structure Of A Designed Selected Ankyrin Re		4e-05
2z7l_A	366	Unphosphorylated Mitogen Activated Protein Kinase E		4e-05
3c9w_A	357	Crystal Structure Of Erk-2 With Hypothemycin Covale		4e-05
2fys_B	364	Crystal Structure Of Erk2 Complex With Kim Peptide		4e-05
2y9q_A	362	Crystal Structure Of Human Erk2 Complexed With A Ma		4e-05
3q5i_A	504	Crystal Structure Of Pbanka_031420 Length = 504		4e-05
2ojg_A	380	Crystal Structure Of Erk2 In Complex With N,n-dimet		4e-05
3aln_A	327	Crystal Structure Of Human Non-Phosphorylated Mkk4		4e-05
1pme_A	380	Structure Of Penta Mutant Human Erk2 Map Kinase Com		4e-05
4dfy_A	371	Crystal Structure Of R194a Mutant Of Camp-Dependent		4e-05
3r63_A	358	Structure Of Erk2 (Spe) Mutant (S246e) Length = 358		4e-05
2qok_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f:		4e-05
1gz8_A	299	Human Cyclin Dependent Kinase 2 Complexed With The		4e-05
3nnx_A	354	Crystal Structure Of Phosphorylated P38 Alpha In Co		4e-05
3lm0_A	327	Crystal Structure Of Human SerineTHREONINE KINASE 1		4e-05
3pix_A	274	Crystal Structure Of Btk Kinase Domain Complexed Wi		4e-05
3odz_X	360	Crystal Structure Of P38alpha Y323r Active Mutant L		4e-05
3p08_A	267	Crystal Structure Of The Human Btk Kinase Domain Le		4e-05
3ocs_A	271	Crystal Structure Of Bruton's Tyrosine Kinase In Co		4e-05
2gph_A	364	Docking Motif Interactions In The Map Kinase Erk2 L		4e-05
1k2p_A	263	Crystal Structure Of Bruton's Tyrosine Kinase Domai		4e-05
4ft3_A	279	Crystal Structure Of The Chk1 Length = 279		4e-05
4fsz_A	279	Crystal Structure Of The Chk1 Length = 279		4e-05
3s95_A	310	Crystal Structure Of The Human Limk1 Kinase Domain		4e-05
3od6_X	360	Crystal Structure Of P38alpha Y323t Active Mutant L		4e-05
3ody_X	360	Crystal Structure Of P38alpha Y323q Active Mutant L		5e-05
1oit_A	299	Imidazopyridines: A Potent And Selective Class Of C		5e-05
3nnu_A	354	Crystal Structure Of P38 Alpha In Complex With Dp13		5e-05
3nz0_A	302	Non-Phosphorylated Tyk2 Kinase With Cmp6 Length = 3		5e-05
4fsw_A	279	Crystal Structure Of The Chk1 Length = 279		5e-05
2ydj_A	276	Discovery Of Checkpoint Kinase Inhibitor Azd7762 By		5e-05
1zzl_A	351	Crystal Structure Of P38 With Triazolopyridine Leng		5e-05
4erw_A	306	Cdk2 In Complex With Staurosporine Length = 306		5e-05
3s3i_A	349	P38 Kinase Crystal Structure In Complex With Small		5e-05
3mpt_A	371	Crystal Structure Of P38 Kinase In Complex With A P		5e-05
2h34_A	309	Apoenzyme Crystal Structure Of The Tuberculosis Ser		5e-05
1oir_A	299	Imidazopyridines: A Potent And Selective Class Of C		5e-05
2baj_A	365	P38alpha Bound To Pyrazolourea Length = 365		5e-05
1h01_A	298	Cdk2 In Complex With A Disubstituted 2, 4-Bis Anili		5e-05
3oef_X	360	Crystal Structure Of Y323f Inactive Mutant Of P38al		5e-05
3k3i_A	350	P38alpha Bound To Novel Dgf-Out Compound Pf-0021595		5e-05
3k3j_A	362	P38alpha Bound To Novel Dfg-Out Compound Pf-0041612		5e-05
3hrb_A	359	P38 Kinase Crystal Structure In Complex With Small		5e-05
2w17_A	299	Cdk2 In Complex With The Imidazole Pyrimidine Amide		5e-05
3qd2_B	332	Crsytal Structure Of Mouse Perk Kinase Domain Lengt		5e-05
3hec_A	348	P38 In Complex With Imatinib Length = 348		5e-05
3gcu_A	360	Human P38 Map Kinase In Complex With Rl48 Length =		5e-05
3ezr_A	300	Cdk-2 With Indazole Inhibitor 17 Bound At Its Activ		5e-05
1fin_A	298	Cyclin A-Cyclin-Dependent Kinase 2 Complex Length =		5e-05
1oz1_A	372	P38 Mitogen-Activated Kinase In Complex With 4-Azai		5e-05
4fsy_A	279	Crystal Structure Of The Chk1 Length = 279		5e-05
3d7z_A	360	Crystal Structure Of P38 Kinase In Complex With A B		5e-05
2npq_A	367	A Novel Lipid Binding Site In The P38 Alpha Map Kin		5e-05
2gfs_A	372	P38 Kinase Crystal Structure In Complex With Ro3201		5e-05
1pf8_A	298	Crystal Structure Of Human Cyclin-dependent Kinase		5e-05
3fi4_A	372	P38 Kinase Crystal Structure In Complex With Ro4499		5e-05
1di9_A	360	The Structure Of P38 Mitogen-Activated Protein Kina		5e-05
1gii_A	298	Human Cyclin Dependent Kinase 2 Complexed With The		5e-05
4fsu_A	279	Crystal Structure Of The Chk1 Length = 279		5e-05
2lgc_A	359	Joint Nmr And X-Ray Refinement Reveals The Structur		5e-05
3zsg_A	362	X-Ray Structure Of P38alpha Bound To Tak-715 Length		5e-05
3hvc_A	362	Crystal Structure Of Human P38alpha Map Kinase Leng		5e-05
3pxf_A	306	Cdk2 In Complex With Two Molecules Of 8-Anilino-1-N		5e-05
3p4k_A	370	The Third Conformation Of P38a Map Kinase Observed		5e-05
1bl6_A	379	The Complex Structure Of The Map Kinase P38SB216995		5e-05
1ove_A	366	The Structure Of P38 Alpha In Complex With A Dihydr		5e-05
3pj8_A	299	Structure Of Cdk2 In Complex With A Pyrazolo[4,3-D]		5e-05
2y8o_A	362	Crystal Structure Of Human P38alpha Complexed With		5e-05
3kq7_A	380	Structure Of Human P38alpha With N-[4-Methyl-3-(6-{		5e-05
4fsm_A	279	Crystal Structure Of The Chk1 Length = 279		5e-05
2gtm_A	348	Mutated Mouse P38 Map Kinase Domain In Complex With		5e-05
1m7q_A	366	Crystal Structure Of P38 Map Kinase In Complex With		5e-05
3dt1_A	383	P38 Complexed With A Quinazoline Inhibitor Length =		5e-05
2puu_A	348	Crystal Structure Of P38 Complex With 1-(5-Tert-But		5e-05
1lew_A	360	Crystal Structure Of Map Kinase P38 Complexed To Th		5e-05
4e5a_X	360	The W197a Mutant Of P38a Map Kinase Length = 360		5e-05
4fsn_A	278	Crystal Structure Of The Chk1 Length = 278		5e-05
3tei_A	362	Crystal Structure Of Human Erk2 Complexed With A Ma		5e-05
2x8e_A	276	Discovery Of A Novel Class Of Triazolones As Checkp		5e-05
2zv7_A	279	Lyn Tyrosine Kinase Domain, Apo Form Length = 279		5e-05
2f9g_A	353	Crystal Structure Of Fus3 Phosphorylated On Tyr182		5e-05
1bmk_A	379	The Complex Structure Of The Map Kinase P38SB218655		5e-05
3kul_B	325	Kinase Domain Of Human Ephrin Type-A Receptor 8 (Ep		5e-05
1vyw_A	309	Structure Of Cdk2CYCLIN A WITH PNU-292137 Length =		6e-05
3tg1_A	380	Crystal Structure Of P38alpha In Complex With A Map		6e-05
3nyx_A	302	Non-Phosphorylated Tyk2 Jh1 Domain With Quinoline-T		6e-05
2hog_A	322	Crystal Structure Of Chek1 In Complex With Inhibito		6e-05
3oht_A	389	Crystal Structure Of Salmo Salar P38alpha Length =		6e-05
2r0u_A	323	Crystal Structure Of Chek1 In Complex With Inhibito		6e-05
4h3q_A	362	Crystal Structure Of Human Erk2 Complexed With A Ma		6e-05
2b9f_A	353	Crystal Structure Of Non-Phosphorylated Fus3 Length		6e-05
3oct_A	265	Crystal Structure Of Bruton's Tyrosine Kinase Mutan		6e-05
2br1_A	297	Structure-Based Design Of Novel Chk1 Inhibitors: In		6e-05
1ia8_A	289	The 1.7 A Crystal Structure Of Human Cell Cycle Che		6e-05
1zlt_A	295	Crystal Structure Of Chk1 Complexed With A Hymenald		6e-05
1ian_A	366	Human P38 Map Kinase Inhibitor Complex Length = 366		6e-05
3kul_A	325	Kinase Domain Of Human Ephrin Type-A Receptor 8 (Ep		7e-05
1j3h_A	350	Crystal Structure Of Apoenzyme Camp-Dependent Prote		7e-05
3dkg_A	317	Sgx Clone 5698a109kfg1h1 Length = 317		7e-05
2y6m_A	291	Crystal Structure Of Epha4 Kinase Domain Length = 2		7e-05
2v5q_A	315	Crystal Structure Of Wild-type Plk-1 Kinase Domain		7e-05
2hel_A	306	Crystal Structure Of A Mutant Epha4 Kinase Domain (		7e-05
3kb7_A	311	Crystal Structure Of Polo-Like Kinase 1 In Complex		7e-05
2oza_B	366	Structure Of P38alpha Complex Length = 366		7e-05
4fst_A	269	Crystal Structure Of The Chk1 Length = 269		7e-05
3v5q_A	297	Discovery Of A Selective Trk Inhibitor With Efficac		7e-05
2xyu_A	285	Crystal Structure Of Epha4 Kinase Domain In Complex		7e-05
2yac_A	311	Crystal Structure Of Polo-Like Kinase 1 In Complex		7e-05
3ot3_A	273	X-Ray Crystal Structure Of Compound 22k Bound To Hu		8e-05
3jvr_A	271	Characterization Of The Chk1 Allosteric Inhibitor B		8e-05
2e9v_A	268	Structure Of H-Chk1 Complexed With A859017 Length =		8e-05
2ghg_A	269	H-Chk1 Complexed With A431994 Length = 269		8e-05
2ayp_A	269	Crystal Structure Of Chk1 With An Indol Inhibitor L		8e-05
1zys_A	273	Co-Crystal Structure Of Checkpoint Kinase Chk1 With		8e-05
2r2p_A	295	Kinase Domain Of Human Ephrin Type-A Receptor 5 (Ep		8e-05
2qcs_A	350	A Complex Structure Between The Catalytic And Regul		8e-05
1bkx_A	350	A Binary Complex Of The Catalytic Subunit Of Camp-D		8e-05
1zyc_A	303	Crystal Structure Of Eif2alpha Protein Kinase Gcn2:		8e-05
1fmo_E	350	Crystal Structure Of A Polyhistidine-Tagged Recombi		8e-05
2erz_E	351	Crystal Structure Of C-amp Dependent Kinase (pka) B		8e-05
1syk_A	350	Crystal Structure Of E230q Mutant Of Camp-Dependent		8e-05
1p14_A	306	Crystal Structure Of A Catalytic-Loop Mutant Of The		8e-05
4e20_A	290	Structure Of Mouse Tyk-2 Complexed To A 3-Aminoinda		8e-05
3pvb_A	345	Crystal Structure Of (73-244)ria:c Holoenzyme Of Ca		8e-05
1apm_E	350	2.0 Angstrom Refined Crystal Structure Of The Catal		8e-05
1jbp_E	350	Crystal Structure Of The Catalytic Subunit Of Camp-		8e-05
1l3r_E	350	Crystal Structure Of A Transition State Mimic Of Th		8e-05
4e1z_A	291	Structure Of Mouse Tyk-2 Complexed To A 3-Aminoinda		8e-05
3ekk_A	307	Insulin Receptor Kinase Complexed With An Inhibitor		8e-05
2qoo_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f:		8e-05
3qal_E	350	Crystal Structure Of Arg280ala Mutant Of Catalytic		9e-05
1ctp_E	350	Structure Of The Mammalian Catalytic Subunit Of Cam		9e-05
1zy4_A	303	Crystal Structure Of Eif2alpha Protein Kinase Gcn2:		9e-05
3mpm_A	267	Lck Complexed With A Pyrazolopyrimidine Length = 26		9e-05
2qur_A	350	Crystal Structure Of F327aK285P MUTANT OF CAMP-Depe		9e-05
4dfx_E	350	Crystal Structure Of Myristoylated K7c Catalytic Su		9e-05
3agm_A	351	Complex Of Pka With The Bisubstrate Protein Kinase		9e-05
3agl_A	351	Complex Of Pka With The Bisubstrate Protein Kinase		9e-05
2jds_A	351	Structure Of Camp-Dependent Protein Kinase Complexe		9e-05
1svh_A	350	Crystal Structure Of Protein Kinase A In Complex Wi		9e-05
1q8w_A	350	The Catalytic Subunit Of Camp-Dependent Protein Kin		9e-05
1stc_E	350	Camp-Dependent Protein Kinase, Alpha-Catalytic Subu		9e-05
4dg3_E	371	Crystal Structure Of R336a Mutant Of Camp-dependent		9e-05
3nx8_A	351	Human Camp Dependent Protein Kinase In Complex With		9e-05
1cdk_A	350	Camp-Dependent Protein Kinase Catalytic Subunit (E.		9e-05
2c1a_A	351	Structure Of Camp-Dependent Protein Kinase Complexe		9e-05
1cmk_E	350	Crystal Structures Of The Myristylated Catalytic Su		9e-05
1ydt_E	350	Structure Of Camp-Dependent Protein Kinase, Alpha-C		9e-05
3dnd_A	350	Camp-Dependent Protein Kinase Pka Catalytic Subunit		1e-04
1xh7_A	350	Crystal Structures Of Protein Kinase B Selective In		1e-04
4ae6_A	343	Structure And Function Of The Human Sperm-specific		1e-04
4ae9_A	343	Structure And Function Of The Human Sperm-specific		1e-04
3mvj_A	371	Human Cyclic Amp-Dependent Protein Kinase Pka Inhib		1e-04
2wqb_A	324	Structure Of The Tie2 Kinase Domain In Complex With		1e-04
2ou7_A	335	Structure Of The Catalytic Domain Of Human Polo-Lik		1e-04
3thb_A	333	Structure Of Plk1 Kinase Domain In Complex With A B		1e-04
1r0p_A	312	Crystal Structure Of The Tyrosine Kinase Domain Of		1e-04
4asz_A	299	Crystal Structure Of Apo Trkb Kinase Domain Length		1e-04
3cik_A	689	Human Grk2 In Complex With Gbetagamma Subunits Leng		1e-04
3krw_A	688	Human Grk2 In Complex With Gbetgamma Subunits And B		1e-04
3dzq_A	361	Human Epha3 Kinase Domain In Complex With Inhibitor		1e-04
3cth_A	314	Crystal Structure Of The Tyrosine Kinase Domain Of		1e-04
2qob_A	344	Human Epha3 Kinase Domain, Base Structure Length =		1e-04
3mh2_A	360	Mutagenesis Of P38 Map Kinase Establishes Key Roles		1e-04
1omw_A	689	Crystal Structure Of The Complex Between G Protein-		1e-04
3psc_A	695	Bovine Grk2 In Complex With Gbetagamma Subunits Len		1e-04
2qoi_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f:		1e-04
3ama_A	351	Protein Kinase A Sixfold Mutant Model Of Aurora B W		1e-04
2qoc_A	344	Human Epha3 Kinase Domain, Phosphorylated, Amp-Pnp		1e-04
4gt5_A	306	Crystal Structure Of The Inactive Trka Kinase Domai		1e-04
3dkc_A	317	Sgx Clone 5698a65kfg1h1 Length = 317		1e-04
4aoj_A	329	Human Trka In Complex With The Inhibitor Az-23 Leng		1e-04
2gnj_A	350	Pka Three Fold Mutant Model Of Rho-Kinase With Y-27		1e-04
1smh_A	350	Protein Kinase A Variant Complex With Completely Or		1e-04
2vwu_A	302	Ephb4 Kinase Domain Inhibitor Complex Length = 302		1e-04
3a4p_A	319	Human C-Met Kinase Domain Complexed With 6-Benzylox		1e-04
2qon_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f:		1e-04
2qo7_A	373	Human Epha3 Kinase And Juxtamembrane Region, Dephos		1e-04
2qof_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f		1e-04
2qod_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y602f		1e-04
2qol_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596:y		1e-04
2gng_A	350	Protein Kinase A Fivefold Mutant Model Of Rho-Kinas		1e-04
2gnf_A	350	Protein Kinase A Fivefold Mutant Model Of Rho-Kinas		1e-04
4f0i_A	300	Crystal Structure Of Apo Trka Length = 300		1e-04
3fxx_A	371	Human Epha3 Kinase And Juxtamembrane Region Bound T		1e-04
2jed_A	352	The Crystal Structure Of The Kinase Domain Of The P		1e-04
3qti_A	314	C-Met Kinase In Complex With Nvp-Bvu972 Length = 31		1e-04
2rku_A	294	Structure Of Plk1 In Complex With Bi2536 Length = 2		1e-04
3c1x_A	373	Crystal Structure Of The Tyrosine Kinase Domain Of		1e-04
2gsf_A	373	The Human Epha3 Receptor Tyrosine Kinase And Juxtam		1e-04
3zuv_A	364	Crystal Structure Of A Designed Selected Ankyrin Re		1e-04
2erk_A	365	Phosphorylated Map Kinase Erk2 Length = 365		1e-04
3vum_A	370	Crystal Structure Of A Cysteine-deficient Mutant M7		1e-04
2f57_A	317	Crystal Structure Of The Human P21-activated Kinase		1e-04
1u59_A	287	Crystal Structure Of The Zap-70 Kinase Domain In Co		1e-04
1rjb_A	344	Crystal Structure Of Flt3 Length = 344		1e-04
2iw6_A	302	Structure Of Human Thr160-Phospho Cdk2-Cyclin A Com		1e-04
1q24_A	350	Pka Double Mutant Model Of Pkb In Complex With Mgat		1e-04
3db6_A	301	Crystal Structure Of An Activated (Thr->asp) Polo-L		1e-04
3cjf_A	309	Crystal Structure Of Vegfr2 In Complex With A 3,4,5		1e-04
3vul_A	370	Crystal Structure Of A Cysteine-deficient Mutant M1		2e-04
3o7l_B	350	Crystal Structure Of Phospholamban (1-19):pka C-Sub		2e-04
1xh9_A	350	Crystal Structures Of Protein Kinase B Selective In		2e-04
1ob3_A	288	Structure Of P. Falciparum Pfpk5 Length = 288		2e-04
4agu_A	311	Crystal Structure Of The Human Cdkl1 Kinase Domain		2e-04
3d5v_A	317	Crystal Structure Of An Activated (Thr->asp) Polo-L		2e-04
4eom_A	301	Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Hum		2e-04
2ghl_A	348	Mutant Mus Musculus P38 Kinase Domain In Complex Wi		2e-04
1u5q_A	348	Crystal Structure Of The Tao2 Kinase Domain: Activa		2e-04
1i44_A	306	Crystallographic Studies Of An Activation Loop Muta		2e-04
2jgz_A	289	Crystal Structure Of Phospho-Cdk2 In Complex With C		2e-04
4eon_A	300	Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Hum		2e-04
4eoj_A	302	Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Huma		2e-04
1qmz_A	299	Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Com		2e-04
1ywr_A	360	Crystal Structure Analysis Of Inactive P38 Kinase D		2e-04
1yw2_A	360	Mutated Mus Musculus P38 Kinase (Mp38) Length = 360		2e-04
4ewq_A	383	Human P38 Alpha Mapk In Complex With A Pyridazine B		2e-04
3cjg_A	309	Crystal Structure Of Vegfr2 In Complex With A 3,4,5		2e-04
2p2i_A	314	Crystal Structure Of The Vegfr2 Kinase Domain In Co		2e-04
4eok_A	300	Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Huma		2e-04
4i3z_A	296	Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNES		2e-04
1jst_A	298	Phosphorylated Cyclin-Dependent Kinase-2 Bound To C		2e-04
3py3_A	380	Crystal Structure Of Phosphorylated P38alpha Map Ki		2e-04
3i6w_A	443	Structure And Activation Mechanism Of The Chk2 Dna-		2e-04
2p2h_A	314	Crystal Structure Of The Vegfr2 Kinase Domain In Co		2e-04
1w98_A	298	The Structural Basis Of Cdk2 Activation By Cyclin E		2e-04
1e9h_A	297	Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex		2e-04
1h1p_A	303	Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMP		2e-04
1v0o_A	288	Structure Of P. Falciparum Pfpk5-Indirubin-5-Sulpho		2e-04
4eos_A	300	Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Co		2e-04
4eoq_A	301	Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Co		2e-04
4bcq_A	301	Structure Of Cdk2 In Complex With Cyclin A And A 2-		2e-04
3u6j_A	314	Crystal Structure Of The Vegfr2 Kinase Domain In Co		2e-04
3l9m_A	351	Crystal Structure Of Pkab3 (Pka Triple Mutant V123a		2e-04
3ewh_A	314	Crystal Structure Of The Vegfr2 Kinase Domain In Co		2e-04
2vo0_A	351	Structure Of Pka-Pkb Chimera Complexed With C-(4-(4		2e-04
2uvy_A	351	Structure Of Pka-pkb Chimera Complexed With Methyl-		2e-04
2jdt_A	351	Structure Of Pka-Pkb Chimera Complexed With Isoquin		2e-04
4agc_A	353	Crystal Structure Of Vegfr2 (Juxtamembrane And Kina		2e-04
3bht_A	300	Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN		2e-04
1v0b_A	288	Crystal Structure Of The T198a Mutant Of Pfpk5 Leng		2e-04
3gcp_A	360	Human P38 Map Kinase In Complex With Sb203580 Lengt		2e-04
3d5w_A	317	Crystal Structure Of A Phosphorylated Polo-Like Kin		2e-04
4eoi_A	299	Thr 160 Phosphorylated Cdk2 K89d, Q131e - Human Cyc		2e-04
1szm_A	350	Dual Binding Mode Of Bisindolylmaleimide 2 To Prote		2e-04
1q61_A	350	Pka Triple Mutant Model Of Pkb Length = 350		2e-04
2xir_A	316	Crystal Structure Of The Vegfr2 Kinase Domain In Co		2e-04
4eop_A	300	Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3		2e-04
1ogu_A	302	Structure Of Human Thr160-phospho Cdk2/cyclin A Com		2e-04
4eoo_A	299	Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3		2e-04
3ka0_A	320	Mk2 Complex With Inhibitor 6-(5-(2-Aminopyrimidin-4		2e-04
3qhr_A	298	Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic		2e-04
1ywn_A	316	Vegfr2 In Complex With A Novel 4-amino-furo[2,3-d]p		2e-04
3vhe_A	359	Crystal Structure Of Human Vegfr2 Kinase Domain Wit		2e-04
2oh4_A	316	Crystal Structure Of Vegfr2 With A Benzimidazole-Ur		2e-04
3d5u_A	317	Crystal Structure Of A Wildtype Polo-Like Kinase 1		2e-04
2jam_A	304	Crystal Structure Of Human Calmodulin-Dependent Pro		2e-04
3vnt_A	318	Crystal Structure Of The Kinase Domain Of Human Veg		2e-04
3vid_A	356	Crystal Structure Of Human Vegfr2 Kinase Domain Wit		2e-04
3i6u_A	419	Structure And Activation Mechanism Of The Chk2 Dna-		2e-04
3c7q_A	316	Structure Of Vegfr2 Kinase Domain In Complex With B		2e-04
2iw8_A	302	Structure Of Human Thr160-Phospho Cdk2-Cyclin A F82		2e-04
2xk9_A	322	Structural Analysis Of Checkpoint Kinase 2 (Chk2) I		2e-04
2w0j_A	323	Crystal Structure Of Chk2 In Complex With Nsc 10955		2e-04
3h9f_A	313	Crystal Structure Of Human Dual Specificity Protein		2e-04
2ycf_A	322	Crystal Structure Of Checkpoint Kinase 2 In Complex		2e-04
1vr2_A	316	Human Vascular Endothelial Growth Factor Receptor 2		2e-04
1y6a_A	366	Crystal Structure Of Vegfr2 In Complex With A 2-Ani		2e-04
2ycr_A	323	Crystal Structure Of Checkpoint Kinase 2 In Complex		2e-04
3pls_A	298	Ron In Complex With Ligand Amp-Pnp Length = 298		2e-04
1xjd_A	345	Crystal Structure Of Pkc-Theta Complexed With Staur		2e-04
3vhk_A	368	Crystal Structure Of The Vegfr2 Kinase Domain In Co		2e-04
4aw5_A	291	Complex Of The Ephb4 Kinase Domain With An Oxindole		3e-04
2hen_A	286	Crystal Structure Of The Ephb2 Receptor Kinase Doma		3e-04
2cn5_A	329	Crystal Structure Of Human Chk2 In Complex With Adp		3e-04
2b9h_A	353	Crystal Structure Of Fus3 With A Docking Motif From		3e-04
2gcd_A	309	Tao2 Kinase Domain-Staurosporine Structure Length =		3e-04
2wzj_A	327	Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82		3e-04
1zxe_A	303	Crystal Structure Of Eif2alpha Protein Kinase Gcn2:		3e-04
2i0v_A	335	C-Fms Tyrosine Kinase In Complex With A Quinolone I		3e-04
3qam_E	350	Crystal Structure Of Glu208ala Mutant Of Catalytic		3e-04
2ogv_A	317	Crystal Structure Of The Autoinhibited Human C-Fms		3e-04
2a19_B	284	Pkr Kinase Domain- Eif2alpha- Amp-Pnp Complex. Leng		4e-04
2i1m_A	333	Cfms Tyrosine Kinase (Tie2 Kid) In Complex With An		4e-04
3lco_A	324	Inhibitor Bound To A Dfg-Out Structure Of The Kinas		4e-04
3bea_A	333	Cfms Tyrosine Kinase (Tie2 Kid) In Complex With A P		4e-04
4aaa_A	331	Crystal Structure Of The Human Cdkl2 Kinase Domain		4e-04
3cok_A	278	Crystal Structure Of Plk4 Kinase Length = 278		4e-04
3niz_A	311	Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5		4e-04
2qkr_A	313	Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5		4e-04
2acx_A	576	Crystal Structure Of G Protein Coupled Receptor Kin		4e-04
3v3v_A	379	Structural And Functional Analysis Of Quercetagetin		4e-04
1rdq_E	350	Hydrolysis Of Atp In The Crystal Of Y204a Mutant Of		4e-04
4apc_A	350	Crystal Structure Of Human Nima-Related Kinase 1 (N		4e-04
2x9e_A	317	Human Mps1 In Complex With Nms-P715 Length = 317		4e-04
3p23_A	432	Crystal Structure Of The Human Kinase And Rnase Dom		4e-04
1yvj_A	290	Crystal Structure Of The Jak3 Kinase Domain In Comp		4e-04
3dxn_A	287	Crystal Structure Of The Calcium-dependent Kinase F		4e-04
3nyn_A	576	Crystal Structure Of G Protein-Coupled Receptor Kin		4e-04
2qnj_A	328	Kinase And Ubiquitin-Associated Domains Of Mark3PAR		4e-04
1kwp_A	400	Crystal Structure Of Mapkap2 Length = 400		4e-04
3fpm_A	325	Crystal Structure Of A Squarate Inhibitor Bound To		4e-04
2jbo_A	326	Protein Kinase Mk2 In Complex With An Inhibitor (Cr		4e-04
3zgw_A	347	Crystal Structure Of Maternal Embryonic Leucine Zip		4e-04
3qup_A	323	Inhibitor Bound Structure Of The Kinase Domain Of T		4e-04
3lcd_A	329	Inhibitor Bound To A Dfg-In Structure Of The Kinase		4e-04
3o8p_A	360	Conformational Plasticity Of P38 Map Kinase Dfg Mot		4e-04
2pzy_A	324	Structure Of Mk2 Complexed With Compound 76 Length		4e-04
2onl_C	406	Crystal Structure Of The P38a-Mapkap Kinase 2 Heter		4e-04
3h4j_B	336	Crystal Structure Of Pombe Ampk Kdaid Fragment Leng		5e-04
3q4t_A	322	Crystal Structure Of Activin Receptor Type-Iia (Acv		5e-04
3gi3_A	360	Crystal Structure Of A N-Phenyl-N'-Naphthylurea Ana		5e-04
2r9s_A	356	C-Jun N-Terminal Kinase 3 With 3,5-Disubstituted Qu		5e-04
2hak_A	328	Catalytic And Ubiqutin-Associated Domains Of Mark1P		5e-04
3r2b_A	318	Mk2 Kinase Bound To Compound 5b Length = 318		5e-04
3r2y_A	319	Mk2 Kinase Bound To Compound 1 Length = 319		5e-04
3hzt_A	467	Crystal Structure Of Toxoplasma Gondii Cdpk3, Tgme4		5e-04
3cek_A	313	Crystal Structure Of Human Dual Specificity Protein		5e-04
3kvx_A	364	Jnk3 Bound To Aminopyrimidine Inhibitor, Sr-3562 Le		5e-04
3pjc_A	315	Crystal Structure Of Jak3 Complexed With A Potent A		5e-04
4hvd_A	314	Jak3 Kinase Domain In Complex With 2-cyclopropyl-5h		5e-04
3vqu_A	320	Crystal Structure Of Human Mps1 Catalytic Domain In		5e-04
3e7o_A	360	Crystal Structure Of Jnk2 Length = 360		5e-04
1ukh_A	369	Structural Basis For The Selective Inhibition Of Jn		5e-04
2xrw_A	371	Linear Binding Motifs For Jnk And For Calcineurin A		5e-04
3gok_A	334	Binding Site Mapping Of Protein Ligands Length = 33		5e-04
2oza_A	356	Structure Of P38alpha Complex Length = 356		5e-04
3lxk_A	327	Structural And Thermodynamic Characterization Of Th		5e-04
3dbq_A	343	Crystal Structure Of Ttk Kinase Domain Length = 343		5e-04
2p3g_X	327	Crystal Structure Of A Pyrrolopyridine Inhibitor Bo		5e-04
3fi3_A	364	Crystal Structure Of Jnk3 With Indazole Inhibitor,		5e-04
3mh0_A	360	Mutagenesis Of P38 Map Kinase Eshtablishes Key Role		6e-04
2w4o_A	349	Crystal Structure Of Human Camk4 In Complex With 4-		6e-04
3vuk_A	370	Crystal Structure Of A Cysteine-deficient Mutant M5		6e-04
3mh3_A	360	Mutagenesis Of P38 Map Kinase Establishes Key Roles		6e-04
3rny_A	346	Crystal Structure Of Human Rsk1 C-Terminal Kinase D		6e-04
2qlu_A	314	Crystal Structure Of Activin Receptor Type Ii Kinas		6e-04
3vui_A	370	Crystal Structure Of A Cysteine-deficient Mutant M2		6e-04
4ec8_A	373	Structure Of Full Length Cdk9 In Complex With Cycli		6e-04
2r0i_A	327	Crystal Structure Of A Kinase Mark2PAR-1 Mutant Len		6e-04
3vuh_A	370	Crystal Structure Of A Cysteine-deficient Mutant M3		7e-04
3iec_A	319	Helicobacter Pylori Caga Inhibits Par1MARK FAMILY K		7e-04
2zmc_A	390	Crystal Structure Of Human Mitotic Checkpoint Kinas		7e-04
1zmu_A	327	Catalytic And Ubiqutin-Associated Domains Of Mark2P		7e-04
3vud_A	370	Crystal Structure Of A Cysteine-deficient Mutant M1		7e-04
3hmn_A	342	Crystal Structure Of Human Mps1 Catalytic Domain In		7e-04
1zmv_A	327	Catalytic And Ubiqutin-Associated Domains Of Mark2P		7e-04
3fv8_A	355	Jnk3 Bound To Piperazine Amide Inhibitor, Sr2774 Le		7e-04
3fe3_A	328	Crystal Structure Of The Kinase Mark3PAR-1: T211a-S		7e-04
3sdj_A	448	Structure Of Rnase-Inactive Point Mutant Of Oligome		7e-04
2q0n_A	301	Structure Of Human P21 Activating Kinase 4 (Pak4) I		7e-04
3fi2_A	353	Crystal Structure Of Jnk3 With Amino-Pyrazole Inhib		7e-04
3mi9_A	351	Crystal Structure Of Hiv-1 Tat Complexed With Human		8e-04
2cdz_A	303	Crystal Structure Of The Human P21-Activated Kinase		8e-04
2wnt_A	330	Crystal Structure Of The Human Ribosomal Protein S6		8e-04
2ozo_A	613	Autoinhibited Intact Human Zap-70 Length = 613		8e-04
2bva_A	292	Crystal Structure Of The Human P21-Activated Kinase		8e-04
4exu_A	371	Mapk13, Inactive Form Length = 371		8e-04
4h1j_A	293	Crystal Structure Of Pyk2 With The Pyrazole 13a Len		8e-04
3fzo_A	277	Crystal Structure Of Pyk2-Apo, Proline-Rich Tyrosin		8e-04
4bcf_A	331	Structure Of Cdk9 In Complex With Cyclin T And A 2-		8e-04
4fie_A	423	Full-Length Human Pak4 Length = 423		8e-04
3blh_A	331	Crystal Structure Of Human Cdk9CYCLINT1 Length = 33		8e-04
1zmw_A	327	Catalytic And Ubiqutin-Associated Domains Of Mark2P		8e-04
3fbv_A	448	Crystal Structure Of The Oligomer Formed By The Kin		8e-04
3coi_A	353	Crystal Structure Of P38delta Kinase Length = 353		8e-04
4fif_A	346	Catalytic Domain Of Human Pak4 With Rpkplvdp Peptid		8e-04
3mh1_A	360	Mutagenesis Of P38 Map Kinase Establishes Key Roles		8e-04
2wqm_A	310	Structure Of Apo Human Nek7 Length = 310		8e-04
3npc_A	364	Crystal Structure Of Jnk2 Complexed With Birb796 Le		9e-04
2x4z_A	296	Crystal Structure Of The Human P21-Activated Kinase		9e-04

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  142 bits (358), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 155/565 (27%), Positives = 231/565 (40%), Gaps = 107/565 (18%)
Query: 57  LNISSFNLQGTITPQLGNLSSLQTLDLSHNKLSGNIPSSIFNM-HTLKLLDFSDNQLFGS 115
           LNISS    G I P    L SLQ L L+ NK +G IP  +     TL  LD S N  +G+
Sbjct: 249 LNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGA 306
Query: 116 LSSFIFNMSSMTTIDLSINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEI 175
           +  F  + S + ++ LS N  SGELP +      TL K + L+ L+L FN  SG +P+ +
Sbjct: 307 VPPFFGSCSLLESLALSSNNFSGELPMD------TLLKMRGLKVLDLSFNEFSGELPESL 360
Query: 176 GNLTKLKEIISTITNS-------TVCEIPREIGNLPYLARLALATNNLVGVVPVTIFNMS 228
            NL+     +   +N+        +C+ P+       L  L L  N   G +P T+ N S
Sbjct: 361 TNLSASLLTLDLSSNNFSGPILPNLCQNPKNT-----LQELYLQNNGFTGKIPPTLSNCS 415
Query: 229 ALKEIXXXXXXXXXXXPSRIDLSLPNVETLNLGINSFSGTIPSSITNSSKLSDLELGENL 288
            L                          +L+L  N  SGTIPSS+ + SKL DL+L  N+
Sbjct: 416 ELV-------------------------SLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNM 450
Query: 289 FSGFIPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGILPK 348
             G IP  +  ++ LE   +  N LT   P     S L+NC  L  + ++ N L G +PK
Sbjct: 451 LEGEIPQELMYVKTLETLILDFNDLTGEIP-----SGLSNCTNLNWISLSNNRLTGEIPK 505
Query: 349 SIGNFSLSLETILMANCSISGNIPQXXXXXXXXXXXXXXXXXXTGPIPVT---------- 398
            IG    +L  + ++N S SGNIP                    G IP            
Sbjct: 506 WIGRLE-NLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAA 564
Query: 399 ------------------------------------FSQLQTLQAFDLTRNKLAGPITDE 422
                                                ++L T    ++T     G  +  
Sbjct: 565 NFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPT 624
Query: 423 LCHLARLHSLVLQGNKFSGSIPSCLGNLTSVRVLYLGLNIFTSVLSSTIWNLKDILFIDV 482
             +   +  L +  N  SG IP  +G++  + +L LG N  +  +   + +L+ +  +D+
Sbjct: 625 FDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDL 684
Query: 483 SSNFLDGPLSLDIGNLKVVIGLDFSRNNLSGDIPITIGEGEIPRGGPFANLTAKSFMGNE 542
           SSN LDG +   +  L ++  +D S NNLS         G IP  G F       F+ N 
Sbjct: 685 SSNKLDGRIPQAMSALTMLTEIDLSNNNLS---------GPIPEMGQFETFPPAKFLNNP 735
Query: 543 LLCGLPDLQVSPCKPNKPNTHKKSR 567
            LCG P  +  P   +    H++S 
Sbjct: 736 GLCGYPLPRCDPSNADGYAHHQRSH 760

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  139 bits (349), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 154/561 (27%), Positives = 230/561 (40%), Gaps = 110/561 (19%)
Query: 57  LNISSFNLQGTITPQLGNLSSLQTLDLSHNKLSGNIPSSIFNM-HTLKLLDFSDNQLFGS 115
           LNISS    G I P    L SLQ L L+ NK +G IP  +     TL  LD S N  +G+
Sbjct: 252 LNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGA 309
Query: 116 LSSFIFNMSSMTTIDLSINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEI 175
           +  F  + S + ++ LS N  SGELP +      TL K + L+ L+L FN  SG +P+ +
Sbjct: 310 VPPFFGSCSLLESLALSSNNFSGELPMD------TLLKMRGLKVLDLSFNEFSGELPESL 363
Query: 176 GNLTKLKEIISTITNS-------TVCEIPREIGNLPYLARLALATNNLVGVVPVTIFNMS 228
            NL+     +   +N+        +C+ P+       L  L L  N   G +P T+ N S
Sbjct: 364 TNLSASLLTLDLSSNNFSGPILPNLCQNPKNT-----LQELYLQNNGFTGKIPPTLSNCS 418
Query: 229 ALKEIXXXXXXXXXXXPSRIDLSLPNVETLNLGINSFSGTIPSSITNSSKLSDLELGENL 288
            L                          +L+L  N  SGTIPSS+ + SKL DL+L  N+
Sbjct: 419 ELV-------------------------SLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNM 453
Query: 289 FSGFIPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGILPK 348
             G IP  +  ++ LE   +  N LT   P     S L+NC  L  + ++ N L G +PK
Sbjct: 454 LEGEIPQELMYVKTLETLILDFNDLTGEIP-----SGLSNCTNLNWISLSNNRLTGEIPK 508
Query: 349 SIGNFSLSLETILMANCSISGNIPQXXXXXXXXXXXXXXXXXXTGPIPVT---------- 398
            IG    +L  + ++N S SGNIP                    G IP            
Sbjct: 509 WIGRLE-NLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAA 567
Query: 399 ------------------------------------FSQLQTLQAFDLTRNKLAGPITDE 422
                                                ++L T    ++T     G  +  
Sbjct: 568 NFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPT 627
Query: 423 LCHLARLHSLVLQGNKFSGSIPSCLGNLTSVRVLYLGLNIFTSVLSSTIWNLKDILFIDV 482
             +   +  L +  N  SG IP  +G++  + +L LG N  +  +   + +L+ +  +D+
Sbjct: 628 FDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDL 687
Query: 483 SSNFLDGPLSLDIGNLKVVIGLDFSRNNLSGDIPITIGEGEIPRGGPFANLTAKSFMGNE 542
           SSN LDG +   +  L ++  +D S NNLS         G IP  G F       F+ N 
Sbjct: 688 SSNKLDGRIPQAMSALTMLTEIDLSNNNLS---------GPIPEMGQFETFPPAKFLNNP 738
Query: 543 LLCGLPDLQVSPCKPNKPNTH 563
            LCG P   +  C P+  + +
Sbjct: 739 GLCGYP---LPRCDPSNADGY 756

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 92.0 bits (227), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 92/317 (29%), Positives = 141/317 (44%), Gaps = 21/317 (6%)
Query: 9   QHQQALLALKAHISYDHTNLFARNWTSSTSVC--IWIGITCDVNS--HRVIGLNISSFNL 64
           Q +QALL +K  +    T     +W  +T  C   W+G+ CD ++  +RV  L++S  NL
Sbjct: 6   QDKQALLQIKKDLGNPTT---LSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNL 62
Query: 65  QGT--ITPQLGNLSSLQTLDLSH-NKLSGNIPSSIFNMHTLKLLDFSDNQLFGSLSSFIF 121
                I   L NL  L  L +   N L G IP +I  +  L  L  +   + G++  F+ 
Sbjct: 63  PKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLS 122
Query: 122 NMSSMTTIDLSINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEIGNLTKL 181
            + ++ T+D S N LSG LP +I  +P+       L  +    N +SGAIP   G+ +KL
Sbjct: 123 QIKTLVTLDFSYNALSGTLPPSISSLPN-------LVGITFDGNRISGAIPDSYGSFSKL 175
Query: 182 KEIISTITNSTVCEIPREIGNLPYLARLALATNNLVGVVPVTIFNMSALKEIXXXXXXXX 241
              ++   N    +IP    NL  LA + L+ N L G   V +F      +         
Sbjct: 176 FTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASV-LFGSDKNTQKIHLAKNSL 233
Query: 242 XXXPSRIDLSLPNVETLNLGINSFSGTIPSSITNSSKLSDLELGENLFSGFIPNTIGNLR 301
                ++ LS  N+  L+L  N   GT+P  +T    L  L +  N   G IP   GNL+
Sbjct: 234 AFDLGKVGLS-KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQ 291
Query: 302 NLEFGNIADNYLTSSTP 318
             +    A+N     +P
Sbjct: 292 RFDVSAYANNKCLCGSP 308

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 67.0 bits (162), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 52/196 (26%), Positives = 85/196 (43%), Gaps = 40/196 (20%)
Query: 392 TGPIPVTFSQLQTLQAFDLTRNKLAGPITDELCHLARLHSLVLQGNKFSGSIPSCLGNLT 451
           +G IP   SQ++TL   D + N L+G +   +  L  L  +   GN+ SG+IP   G+ +
Sbjct: 114 SGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFS 173
Query: 452 SVRV-LYLGLNIFTSVLSSTIWNLKDILFIDVSSNFLDG--------------------P 490
            +   + +  N  T  +  T  NL ++ F+D+S N L+G                     
Sbjct: 174 KLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNS 232
Query: 491 LSLDIGNL---KVVIGLDFSRNNLSGDIPITIGE---------------GEIPRGGPFAN 532
           L+ D+G +   K + GLD   N + G +P  + +               GEIP+GG    
Sbjct: 233 LAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQR 292
Query: 533 LTAKSFMGNELLCGLP 548
               ++  N+ LCG P
Sbjct: 293 FDVSAYANNKCLCGSP 308

>pdb|2QKW|B Chain B, Structural Basis For Activation Of Plant Immunity By Bacterial Effector Protein Avrpto Length = 321

Iteration: 1
 Score = 75.1 bits (183), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 36/79 (45%), Positives = 51/79 (64%)
Query: 686 LHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPE 745
           LH+ H+  IIH D+K  N+LLDE+ V  I+DFGI+K  +  DQ         T+GY+ PE
Sbjct: 152 LHYLHTRAIIHRDVKSINILLDENFVPKITDFGISKKGTELDQTHLXXVVKGTLGYIDPE 211
Query: 746 YGTKGRVSTRGDVCSFGII 764
           Y  KGR++ + DV SFG++
Sbjct: 212 YFIKGRLTEKSDVYSFGVV 230

>pdb|3PWY|A Chain A, Crystal Structure Of An Extender (Spd28345)-Modified Human Pdk1 Complex 2 Length = 311

Iteration: 1
 Score = 72.8 bits (177), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 44/113 (38%), Positives = 62/113 (54%), Gaps = 10/113 (8%)
Query: 652 QYERALKSFEDECEVRKRIRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMV 711
           +Y R + SF++ C        R     I S+LEYLH      IIH DLKP N+LL+EDM 
Sbjct: 121 KYIRKIGSFDETCT-------RFYTAEIVSALEYLH---GKGIIHRDLKPENILLNEDMH 170
Query: 712 AHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
             I+DFG AK+LS E + ++    + T  Y++PE  T+   S   D+ + G I
Sbjct: 171 IQITDFGTAKVLSPESKQARANSFVGTAQYVSPELLTEKSASKSSDLWALGCI 223

>pdb|3TL8|A Chain A, The Avrptob-Bak1 Complex Reveals Two Structurally Similar Kinaseinteracting Domains In A Single Type Iii Effector Length = 349

Iteration: 1
 Score = 72.4 bits (176), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 58/209 (27%), Positives = 90/209 (43%), Gaps = 60/209 (28%)
Query: 615 IRRFSYHELLRATDRFSENNLIGIG-----------NGMEVAVKVFHQQYERALK-SFED 662
           ++RFS  EL  A+D FS  N++G G           +G  VAVK   ++  +  +  F+ 
Sbjct: 25  LKRFSLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERXQGGELQFQT 84
Query: 663 ECEVRKRIRHRNLVKII------------------------------------------- 679
           E E+     HRNL+++                                            
Sbjct: 85  EVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPESQPPLDWPKRQRI 144
Query: 680 ----SSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQT 735
               +  L YLH      IIH D+K +N+LLDE+  A + DFG+AKL+  +D        
Sbjct: 145 ALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDXHVXXA-V 203
Query: 736 LATIGYMAPEYGTKGRVSTRGDVCSFGII 764
             TIG++APEY + G+ S + DV  +G++
Sbjct: 204 RGTIGHIAPEYLSTGKSSEKTDVFGYGVM 232

>pdb|3HGK|A Chain A, Crystal Structure Of Effect Protein Avrptob Complexed With Kinase Pto Length = 327

Iteration: 1
 Score = 72.0 bits (175), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 35/79 (44%), Positives = 50/79 (63%)
Query: 686 LHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPE 745
           LH+ H+  IIH D+K  N+LLDE+ V  I+DFGI+K  +   Q         T+GY+ PE
Sbjct: 152 LHYLHTRAIIHRDVKSINILLDENFVPKITDFGISKKGTELGQTHLXXVVKGTLGYIDPE 211
Query: 746 YGTKGRVSTRGDVCSFGII 764
           Y  KGR++ + DV SFG++
Sbjct: 212 YFIKGRLTEKSDVYSFGVV 230

>pdb|4A07|A Chain A, Human Pdk1 Kinase Domain In Complex With Allosteric Activator Ps171 Bound To The Pif-Pocket Length = 311

Iteration: 1
 Score = 70.9 bits (172), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 43/113 (38%), Positives = 61/113 (53%), Gaps = 10/113 (8%)
Query: 652 QYERALKSFEDECEVRKRIRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMV 711
           +Y R + SF++ C        R     I S+LEYLH      IIH DLKP N+LL+EDM 
Sbjct: 121 KYIRKIGSFDETCT-------RFYTAEIVSALEYLH---GKGIIHRDLKPENILLNEDMH 170
Query: 712 AHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
             I+DFG AK+LS E + ++    + T  Y++PE  T+       D+ + G I
Sbjct: 171 IQITDFGTAKVLSPESKQARANXFVGTAQYVSPELLTEKSAXKSSDLWALGCI 223

>pdb|3QC4|A Chain A, Pdk1 In Complex With Dfg-Out Inhibitor Xxx Length = 314

Iteration: 1
 Score = 70.9 bits (172), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 43/113 (38%), Positives = 61/113 (53%), Gaps = 10/113 (8%)
Query: 652 QYERALKSFEDECEVRKRIRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMV 711
           +Y R + SF++ C        R     I S+LEYLH      IIH DLKP N+LL+EDM 
Sbjct: 124 KYIRKIGSFDETCT-------RFYTAEIVSALEYLH---GKGIIHRDLKPENILLNEDMH 173
Query: 712 AHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
             I+DFG AK+LS E + ++    + T  Y++PE  T+       D+ + G I
Sbjct: 174 IQITDFGTAKVLSPESKQARANXFVGTAQYVSPELLTEKSACKSSDLWALGCI 226

>pdb|1H1W|A Chain A, High Resolution Crystal Structure Of The Human Pdk1 Catalytic Domain Length = 289

Iteration: 1
 Score = 70.9 bits (172), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 44/113 (38%), Positives = 62/113 (54%), Gaps = 10/113 (8%)
Query: 652 QYERALKSFEDECEVRKRIRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMV 711
           +Y R + SF++ C        R     I S+LEYLH G  I  IH DLKP N+LL+EDM 
Sbjct: 99  KYIRKIGSFDETCT-------RFYTAEIVSALEYLH-GKGI--IHRDLKPENILLNEDMH 148
Query: 712 AHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
             I+DFG AK+LS E + ++    + T  Y++PE  T+       D+ + G I
Sbjct: 149 IQITDFGTAKVLSPESKQARANXFVGTAQYVSPELLTEKSACKSSDLWALGCI 201

>pdb|3HRC|A Chain A, Crystal Structure Of A Mutant Of Human Pdk1 Kinase Domain In Complex With Atp Length = 311

Iteration: 1
 Score = 70.9 bits (172), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 43/113 (38%), Positives = 61/113 (53%), Gaps = 10/113 (8%)
Query: 652 QYERALKSFEDECEVRKRIRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMV 711
           +Y R + SF++ C        R     I S+LEYLH      IIH DLKP N+LL+EDM 
Sbjct: 121 KYIRKIGSFDETCT-------RFYTAEIVSALEYLH---GKGIIHRDLKPENILLNEDMH 170
Query: 712 AHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
             I+DFG AK+LS E + ++    + T  Y++PE  T+       D+ + G I
Sbjct: 171 IQITDFGTAKVLSPESKQARANXFVGTAQYVSPELLTEKSACKSSDLWALGCI 223

>pdb|3RWP|A Chain A, Discovery Of A Novel, Potent And Selective Inhibitor Of 3- Phosphoinositide Dependent Kinase (Pdk1) Length = 311

Iteration: 1
 Score = 70.5 bits (171), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 43/113 (38%), Positives = 61/113 (53%), Gaps = 10/113 (8%)
Query: 652 QYERALKSFEDECEVRKRIRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMV 711
           +Y R + SF++ C        R     I S+LEYLH      IIH DLKP N+LL+EDM 
Sbjct: 121 KYIRKIGSFDETCT-------RFYTAEIVSALEYLH---GKGIIHRDLKPENILLNEDMH 170
Query: 712 AHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
             I+DFG AK+LS E + ++    + T  Y++PE  T+       D+ + G I
Sbjct: 171 IQITDFGTAKVLSPESKQARANXFVGTAQYVSPELLTEKSACKSSDLWALGCI 223

>pdb|1UU3|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With Ly333531 Length = 310

Iteration: 1
 Score = 70.5 bits (171), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 43/113 (38%), Positives = 61/113 (53%), Gaps = 10/113 (8%)
Query: 652 QYERALKSFEDECEVRKRIRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMV 711
           +Y R + SF++ C        R     I S+LEYLH      IIH DLKP N+LL+EDM 
Sbjct: 119 KYIRKIGSFDETCT-------RFYTAEIVSALEYLH---GKGIIHRDLKPENILLNEDMH 168
Query: 712 AHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
             I+DFG AK+LS E + ++    + T  Y++PE  T+       D+ + G I
Sbjct: 169 IQITDFGTAKVLSPESKQARANXFVGTAQYVSPELLTEKSACKSSDLWALGCI 221

>pdb|2R7B|A Chain A, Crystal Structure Of The Phosphoinositide-Dependent Kinase- 1 (Pdk-1)catalytic Domain Bound To A Dibenzonaphthyridine Inhibitor Length = 312

Iteration: 1
 Score = 70.5 bits (171), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 43/113 (38%), Positives = 61/113 (53%), Gaps = 10/113 (8%)
Query: 652 QYERALKSFEDECEVRKRIRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMV 711
           +Y R + SF++ C        R     I S+LEYLH      IIH DLKP N+LL+EDM 
Sbjct: 122 KYIRKIGSFDETCT-------RFYTAEIVSALEYLH---GKGIIHRDLKPENILLNEDMH 171
Query: 712 AHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
             I+DFG AK+LS E + ++    + T  Y++PE  T+       D+ + G I
Sbjct: 172 IQITDFGTAKVLSPESKQARANSFVGTAQYVSPELLTEKSACKSSDLWALGCI 224

>pdb|2XCK|A Chain A, Crystal Structure Of Pdk1 In Complex With A Pyrazoloquinazoline Inhibitor Length = 309

Iteration: 1
 Score = 70.5 bits (171), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 43/113 (38%), Positives = 61/113 (53%), Gaps = 10/113 (8%)
Query: 652 QYERALKSFEDECEVRKRIRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMV 711
           +Y R + SF++ C        R     I S+LEYLH      IIH DLKP N+LL+EDM 
Sbjct: 119 KYIRKIGSFDETCT-------RFYTAEIVSALEYLH---GKGIIHRDLKPENILLNEDMH 168
Query: 712 AHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
             I+DFG AK+LS E + ++    + T  Y++PE  T+       D+ + G I
Sbjct: 169 IQITDFGTAKVLSPESKQARANXFVGTAQYVSPELLTEKSACKSSDLWALGCI 221

>pdb|2BIY|A Chain A, Structure Of Pdk1-S241a Mutant Kinase Domain Length = 310

Iteration: 1
 Score = 70.5 bits (171), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 43/113 (38%), Positives = 61/113 (53%), Gaps = 10/113 (8%)
Query: 652 QYERALKSFEDECEVRKRIRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMV 711
           +Y R + SF++ C        R     I S+LEYLH      IIH DLKP N+LL+EDM 
Sbjct: 119 KYIRKIGSFDETCT-------RFYTAEIVSALEYLH---GKGIIHRDLKPENILLNEDMH 168
Query: 712 AHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
             I+DFG AK+LS E + ++    + T  Y++PE  T+       D+ + G I
Sbjct: 169 IQITDFGTAKVLSPESKQARANAFVGTAQYVSPELLTEKSACKSSDLWALGCI 221

>pdb|3H9O|A Chain A, Phosphoinositide-Dependent Protein Kinase 1 (Pdk-1) In Complex With Compound 9 Length = 311

Iteration: 1
 Score = 70.5 bits (171), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 43/113 (38%), Positives = 61/113 (53%), Gaps = 10/113 (8%)
Query: 652 QYERALKSFEDECEVRKRIRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMV 711
           +Y R + SF++ C        R     I S+LEYLH      IIH DLKP N+LL+EDM 
Sbjct: 121 KYIRKIGSFDETCT-------RFYTAEIVSALEYLH---GKGIIHRDLKPENILLNEDMH 170
Query: 712 AHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
             I+DFG AK+LS E + ++    + T  Y++PE  T+       D+ + G I
Sbjct: 171 IQITDFGTAKVLSPESKQARANXFVGTAQYVSPELLTEKSACKSSDLWALGCI 223

>pdb|3SC1|A Chain A, Novel Isoquinolone Pdk1 Inhibitors Discovered Through Fragment-Based Lead Discovery Length = 311

Iteration: 1
 Score = 70.5 bits (171), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 43/113 (38%), Positives = 61/113 (53%), Gaps = 10/113 (8%)
Query: 652 QYERALKSFEDECEVRKRIRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMV 711
           +Y R + SF++ C        R     I S+LEYLH      IIH DLKP N+LL+EDM 
Sbjct: 121 KYIRKIGSFDETCT-------RFYTAEIVSALEYLH---GKGIIHRDLKPENILLNEDMH 170
Query: 712 AHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
             I+DFG AK+LS E + ++    + T  Y++PE  T+       D+ + G I
Sbjct: 171 IQITDFGTAKVLSPESKQARANXFVGTAQYVSPELLTEKSACKSSDLWALGCI 223

>pdb|2XCH|A Chain A, Crystal Structure Of Pdk1 In Complex With A Pyrazoloquinazoline Inhibitor Length = 309

Iteration: 1
 Score = 70.5 bits (171), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 43/113 (38%), Positives = 61/113 (53%), Gaps = 10/113 (8%)
Query: 652 QYERALKSFEDECEVRKRIRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMV 711
           +Y R + SF++ C        R     I S+LEYLH      IIH DLKP N+LL+EDM 
Sbjct: 119 KYIRKIGSFDETCT-------RFYTAEIVSALEYLH---GKGIIHRDLKPENILLNEDMH 168
Query: 712 AHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
             I+DFG AK+LS E + ++    + T  Y++PE  T+       D+ + G I
Sbjct: 169 IQITDFGTAKVLSPESKQARANXFVGTAQYVSPELLTEKSACKSSDLWALGCI 221

>pdb|3IOP|A Chain A, Pdk-1 In Complex With The Inhibitor Compound-8i Length = 312

Iteration: 1
 Score = 70.5 bits (171), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 43/113 (38%), Positives = 61/113 (53%), Gaps = 10/113 (8%)
Query: 652 QYERALKSFEDECEVRKRIRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMV 711
           +Y R + SF++ C        R     I S+LEYLH      IIH DLKP N+LL+EDM 
Sbjct: 122 KYIRKIGSFDETCT-------RFYTAEIVSALEYLH---GKGIIHRDLKPENILLNEDMH 171
Query: 712 AHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
             I+DFG AK+LS E + ++    + T  Y++PE  T+       D+ + G I
Sbjct: 172 IQITDFGTAKVLSPESKQARANXFVGTAQYVSPELLTEKSACKSSDLWALGCI 224

>pdb|1Z5M|A Chain A, Crystal Structure Of N1-[3-[[5-bromo-2-[[3-[(1-pyrrolidinylcarbonyl) Amino]phenyl]amino]-4-pyrimidinyl]amino]propyl]-2,2- Dimethylpropanediamide Complexed With Human Pdk1 Length = 286

Iteration: 1
 Score = 70.5 bits (171), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 43/113 (38%), Positives = 61/113 (53%), Gaps = 10/113 (8%)
Query: 652 QYERALKSFEDECEVRKRIRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMV 711
           +Y R + SF++ C        R     I S+LEYLH      IIH DLKP N+LL+EDM 
Sbjct: 96  KYIRKIGSFDETCT-------RFYTAEIVSALEYLH---GKGIIHRDLKPENILLNEDMH 145
Query: 712 AHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
             I+DFG AK+LS E + ++    + T  Y++PE  T+       D+ + G I
Sbjct: 146 IQITDFGTAKVLSPESKQARANXFVGTAQYVSPELLTEKSACKSSDLWALGCI 198

>pdb|3NUS|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) With Fragment8 Length = 286

Iteration: 1
 Score = 70.5 bits (171), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 43/113 (38%), Positives = 61/113 (53%), Gaps = 10/113 (8%)
Query: 652 QYERALKSFEDECEVRKRIRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMV 711
           +Y R + SF++ C        R     I S+LEYLH      IIH DLKP N+LL+EDM 
Sbjct: 97  KYIRKIGSFDETCT-------RFYTAEIVSALEYLH---GKGIIHRDLKPENILLNEDMH 146
Query: 712 AHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
             I+DFG AK+LS E + ++    + T  Y++PE  T+       D+ + G I
Sbjct: 147 IQITDFGTAKVLSPESKQARANXFVGTAQYVSPELLTEKSACKSSDLWALGCI 199

>pdb|3NAY|A Chain A, Pdk1 In Complex With Inhibitor Mp6 Length = 311

Iteration: 1
 Score = 70.5 bits (171), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 43/113 (38%), Positives = 61/113 (53%), Gaps = 10/113 (8%)
Query: 652 QYERALKSFEDECEVRKRIRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMV 711
           +Y R + SF++ C        R     I S+LEYLH      IIH DLKP N+LL+EDM 
Sbjct: 118 KYIRKIGSFDETCT-------RFYTAEIVSALEYLH---GKGIIHRDLKPENILLNEDMH 167
Query: 712 AHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
             I+DFG AK+LS E + ++    + T  Y++PE  T+       D+ + G I
Sbjct: 168 IQITDFGTAKVLSPESKQARANXFVGTAQYVSPELLTEKSACKSSDLWALGCI 220

>pdb|3NAX|A Chain A, Pdk1 In Complex With Inhibitor Mp7 Length = 311

Iteration: 1
 Score = 70.5 bits (171), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 43/113 (38%), Positives = 61/113 (53%), Gaps = 10/113 (8%)
Query: 652 QYERALKSFEDECEVRKRIRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMV 711
           +Y R + SF++ C        R     I S+LEYLH      IIH DLKP N+LL+EDM 
Sbjct: 118 KYIRKIGSFDETCT-------RFYTAEIVSALEYLH---GKGIIHRDLKPENILLNEDMH 167
Query: 712 AHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
             I+DFG AK+LS E + ++    + T  Y++PE  T+       D+ + G I
Sbjct: 168 IQITDFGTAKVLSPESKQARANSFVGTAQYVSPELLTEKSACKSSDLWALGCI 220

>pdb|1UU9|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With Bim-3 Length = 286

Iteration: 1
 Score = 70.5 bits (171), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 44/113 (38%), Positives = 62/113 (54%), Gaps = 10/113 (8%)
Query: 652 QYERALKSFEDECEVRKRIRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMV 711
           +Y R + SF++ C        R     I S+LEYLH G  I  IH DLKP N+LL+EDM 
Sbjct: 98  KYIRKIGSFDETCT-------RFYTAEIVSALEYLH-GKGI--IHRDLKPENILLNEDMH 147
Query: 712 AHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
             I+DFG AK+LS E + ++    + T  Y++PE  T+       D+ + G I
Sbjct: 148 IQITDFGTAKVLSPESKQARANXFVGTAQYVSPELLTEKSACKSSDLWALGCI 200

>pdb|3ORX|A Chain A, Pdk1 Mutant Bound To Allosteric Disulfide Fragment Inhibitor 1f8 Length = 316

Iteration: 1
 Score = 70.5 bits (171), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 43/113 (38%), Positives = 61/113 (53%), Gaps = 10/113 (8%)
Query: 652 QYERALKSFEDECEVRKRIRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMV 711
           +Y R + SF++ C        R     I S+LEYLH      IIH DLKP N+LL+EDM 
Sbjct: 126 KYIRKIGSFDETCT-------RFYTAEIVSALEYLH---GKGIIHRDLKPENILLNEDMH 175
Query: 712 AHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
             I+DFG AK+LS E + ++    + T  Y++PE  T+       D+ + G I
Sbjct: 176 IQITDFGTAKVLSPESKQARANXFVGTAQYVSPELLTEKSACKSSDLWALGCI 228

>pdb|3NUN|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) With Lead Compound Length = 292

Iteration: 1
 Score = 70.5 bits (171), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 43/113 (38%), Positives = 61/113 (53%), Gaps = 10/113 (8%)
Query: 652 QYERALKSFEDECEVRKRIRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMV 711
           +Y R + SF++ C        R     I S+LEYLH      IIH DLKP N+LL+EDM 
Sbjct: 103 KYIRKIGSFDETCT-------RFYTAEIVSALEYLH---GKGIIHRDLKPENILLNEDMH 152
Query: 712 AHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
             I+DFG AK+LS E + ++    + T  Y++PE  T+       D+ + G I
Sbjct: 153 IQITDFGTAKVLSPESKQARANXFVGTAQYVSPELLTEKSACKSSDLWALGCI 205

>pdb|3UIM|A Chain A, Structural Basis For The Impact Of Phosphorylation On Plant Receptor- Like Kinase Bak1 Activation Length = 326

Iteration: 1
 Score = 68.9 bits (167), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 56/209 (26%), Positives = 88/209 (42%), Gaps = 60/209 (28%)
Query: 615 IRRFSYHELLRATDRFSENNLIGIG-----------NGMEVAVKVFHQQYERALK-SFED 662
           ++RFS  EL  A+D F   N++G G           +G  VAVK   ++  +  +  F+ 
Sbjct: 17  LKRFSLRELQVASDNFXNKNILGRGGFGKVYKGRLADGXLVAVKRLKEERTQGGELQFQT 76
Query: 663 ECEVRKRIRHRNLVKII------------------------------------------- 679
           E E+     HRNL+++                                            
Sbjct: 77  EVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPESQPPLDWPKRQRI 136
Query: 680 ----SSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQT 735
               +  L YLH      IIH D+K +N+LLDE+  A + DFG+AKL+  +D        
Sbjct: 137 ALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDXHVXXA-V 195
Query: 736 LATIGYMAPEYGTKGRVSTRGDVCSFGII 764
              IG++APEY + G+ S + DV  +G++
Sbjct: 196 RGXIGHIAPEYLSTGKSSEKTDVFGYGVM 224

>pdb|2NRY|A Chain A, Crystal Structure Of Irak-4 Length = 307

Iteration: 1
 Score = 63.2 bits (152), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 54/210 (25%), Positives = 85/210 (40%), Gaps = 64/210 (30%)
Query: 618 FSYHELLRATDRFSENNLIGIGNGM-EVAVKVFHQQY-------------------ERAL 657
           FS++EL   T+ F E  +   GN M E    V ++ Y                   E   
Sbjct: 15  FSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYVNNTTVAVKKLAAMVDITTEELK 74
Query: 658 KSFEDECEVRKRIRHRNLVKIISSS-------LEYLH----------------------- 687
           + F+ E +V  + +H NLV+++  S       L Y++                       
Sbjct: 75  QQFDQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGTPPLSWHM 134
Query: 688 -------------FGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQ 734
                        F H    IH D+K +N+LLDE   A ISDFG+A+      Q    ++
Sbjct: 135 RCKIAQGAANGINFLHENHHIHRDIKSANILLDEAFTAKISDFGLARASEKFAQTVMXSR 194
Query: 735 TLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
            + T  YMAPE   +G ++ + D+ SFG++
Sbjct: 195 IVGTTAYMAPE-ALRGEITPKSDIYSFGVV 223

>pdb|2OIB|A Chain A, Crystal Structure Of Irak4 Kinase Domain Apo Form Length = 301

Iteration: 1
 Score = 62.4 bits (150), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 54/210 (25%), Positives = 84/210 (40%), Gaps = 64/210 (30%)
Query: 618 FSYHELLRATDRFSENNLIGIGNGM-EVAVKVFHQQY-------------------ERAL 657
           FS++EL   T+ F E  +   GN M E    V ++ Y                   E   
Sbjct: 9   FSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYVNNTTVAVKKLAAMVDITTEELK 68
Query: 658 KSFEDECEVRKRIRHRNLVKIISSS-------LEYLH----------------------- 687
           + F+ E +V  + +H NLV+++  S       L Y++                       
Sbjct: 69  QQFDQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGTPPLSWHM 128
Query: 688 -------------FGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQ 734
                        F H    IH D+K +N+LLDE   A ISDFG+A+      Q     +
Sbjct: 129 RCKIAQGAANGINFLHENHHIHRDIKSANILLDEAFTAKISDFGLARASEKFAQXVMXXR 188
Query: 735 TLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
            + T  YMAPE   +G ++ + D+ SFG++
Sbjct: 189 IVGTTAYMAPE-ALRGEITPKSDIYSFGVV 217

>pdb|2NRU|A Chain A, Crystal Structure Of Irak-4 Length = 307

Iteration: 1
 Score = 62.4 bits (150), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/210 (25%), Positives = 84/210 (40%), Gaps = 64/210 (30%)
Query: 618 FSYHELLRATDRFSENNLIGIGNGM-EVAVKVFHQQY-------------------ERAL 657
           FS++EL   T+ F E  +   GN M E    V ++ Y                   E   
Sbjct: 15  FSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYVNNTTVAVKKLAAMVDITTEELK 74
Query: 658 KSFEDECEVRKRIRHRNLVKIISSS-------LEYLH----------------------- 687
           + F+ E +V  + +H NLV+++  S       L Y++                       
Sbjct: 75  QQFDQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGTPPLSWHM 134
Query: 688 -------------FGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQ 734
                        F H    IH D+K +N+LLDE   A ISDFG+A+      Q     +
Sbjct: 135 RCKIAQGAANGINFLHENHHIHRDIKSANILLDEAFTAKISDFGLARASEKFAQTVMXXR 194
Query: 735 TLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
            + T  YMAPE   +G ++ + D+ SFG++
Sbjct: 195 IVGTTAYMAPE-ALRGEITPKSDIYSFGVV 223

>pdb|3ORM|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain D76a Mutant Length = 311

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 53/95 (55%), Gaps = 5/95 (5%)
Query: 673 RNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQ 732
           +  +++I+ + + L+F H   IIH D+KP+N+++       + DFGIA+ ++  D  +  
Sbjct: 116 KRAIEVIADACQALNFSHQNGIIHRDVKPANIMISATNAVKVMDFGIARAIA--DSGNSV 173
Query: 733 TQTLATIG---YMAPEYGTKGRVSTRGDVCSFGII 764
           TQT A IG   Y++PE      V  R DV S G +
Sbjct: 174 TQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCV 208

>pdb|1MRU|A Chain A, Intracellular SerTHR PROTEIN KINASE DOMAIN OF Mycobacterium Tuberculosis Pknb. Length = 311

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 53/95 (55%), Gaps = 5/95 (5%)
Query: 673 RNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQ 732
           +  +++I+ + + L+F H   IIH D+KP+N+++       + DFGIA+ ++  D  +  
Sbjct: 116 KRAIEVIADACQALNFSHQNGIIHRDVKPANIMISATNAVKVMDFGIARAIA--DSGNSV 173
Query: 733 TQTLATIG---YMAPEYGTKGRVSTRGDVCSFGII 764
           TQT A IG   Y++PE      V  R DV S G +
Sbjct: 174 TQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCV 208

>pdb|3ORI|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant (Crystal Form 1) Length = 311

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 53/95 (55%), Gaps = 5/95 (5%)
Query: 673 RNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQ 732
           +  +++I+ + + L+F H   IIH D+KP+N+++       + DFGIA+ ++  D  +  
Sbjct: 116 KRAIEVIADACQALNFSHQNGIIHRDVKPANIMISATNAVKVMDFGIARAIA--DSGNSV 173
Query: 733 TQTLATIG---YMAPEYGTKGRVSTRGDVCSFGII 764
           TQT A IG   Y++PE      V  R DV S G +
Sbjct: 174 TQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCV 208

>pdb|3F61|A Chain A, Crystal Structure Of M. Tuberculosis Pknb Leu33aspVAL222ASP DOUBLE MUTANT IN COMPLEX WITH ADP Length = 311

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 53/95 (55%), Gaps = 5/95 (5%)
Query: 673 RNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQ 732
           +  +++I+ + + L+F H   IIH D+KP+N+++       + DFGIA+ ++  D  +  
Sbjct: 116 KRAIEVIADACQALNFSHQNGIIHRDVKPANIMISATNAVKVMDFGIARAIA--DSGNSV 173
Query: 733 TQTLATIG---YMAPEYGTKGRVSTRGDVCSFGII 764
           TQT A IG   Y++PE      V  R DV S G +
Sbjct: 174 TQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCV 208

>pdb|3U4W|A Chain A, Src In Complex With Dna-Templated Macrocyclic Inhibitor Mc4b Length = 275

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 56/100 (56%), Gaps = 1/100 (1%)
Query: 665 EVRKRIRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLS 724
           E+ K +R   LV + +     + +   +  +H DL+ +N+L+ E++V  ++DFG+A+L+ 
Sbjct: 95  EMGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIE 154
Query: 725 GEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
             +  ++Q      I + APE    GR + + DV SFGI+
Sbjct: 155 DNEYTARQGAKFP-IKWTAPEAALYGRFTIKSDVWSFGIL 193

>pdb|3D7U|B Chain B, Structural Basis For The Recognition Of C-Src By Its Inactivator Csk Length = 277

Iteration: 1
 Score = 60.8 bits (146), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 56/100 (56%), Gaps = 1/100 (1%)
Query: 665 EVRKRIRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLS 724
           E+ K +R   LV + +     + +   +  +H DL+ +N+L+ E++V  ++DFG+A+L+ 
Sbjct: 97  EMGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIE 156
Query: 725 GEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
             +  ++Q      I + APE    GR + + DV SFGI+
Sbjct: 157 DNEYTARQGAKFP-IKWTAPEAALYGRFTIKSDVWSFGIL 195

>pdb|1O6Y|A Chain A, Catalytic Domain Of Pknb Kinase From Mycobacterium Tuberculosis Length = 299

Iteration: 1
 Score = 60.8 bits (146), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 53/95 (55%), Gaps = 5/95 (5%)
Query: 673 RNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQ 732
           +  +++I+ + + L+F H   IIH D+KP+N+++       + DFGIA+ ++  D  +  
Sbjct: 133 KRAIEVIADACQALNFSHQNGIIHRDVKPANIMISATNAVKVMDFGIARAIA--DSGNSV 190
Query: 733 TQTLATIG---YMAPEYGTKGRVSTRGDVCSFGII 764
           TQT A IG   Y++PE      V  R DV S G +
Sbjct: 191 TQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCV 225

>pdb|3DQW|A Chain A, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs Length = 286

Iteration: 1
 Score = 60.8 bits (146), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 56/100 (56%), Gaps = 1/100 (1%)
Query: 665 EVRKRIRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLS 724
           E+ K +R   LV + +     + +   +  +H DL+ +N+L+ E++V  ++DFG+A+L+ 
Sbjct: 106 EMGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIE 165
Query: 725 GEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
             +  ++Q      I + APE    GR + + DV SFGI+
Sbjct: 166 DNEXTARQGAKFP-IKWTAPEAALYGRFTIKSDVWSFGIL 204

>pdb|2OIQ|A Chain A, Crystal Structure Of Chicken C-Src Kinase Domain In Complex With The Cancer Drug Imatinib. Length = 286

Iteration: 1
 Score = 60.8 bits (146), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 56/100 (56%), Gaps = 1/100 (1%)
Query: 665 EVRKRIRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLS 724
           E+ K +R   LV + +     + +   +  +H DL+ +N+L+ E++V  ++DFG+A+L+ 
Sbjct: 106 EMGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIE 165
Query: 725 GEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
             +  ++Q      I + APE    GR + + DV SFGI+
Sbjct: 166 DNEYTARQGAKFP-IKWTAPEAALYGRFTIKSDVWSFGIL 204

>pdb|1YI6|A Chain A, C-Term Tail Segment Of Human Tyrosine Kinase (258-533) Length = 276

Iteration: 1
 Score = 60.8 bits (146), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 55/100 (55%), Gaps = 1/100 (1%)
Query: 665 EVRKRIRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLS 724
           E  K +R   LV + +     + +   +  +H DL+ +N+L+ E++V  ++DFG+A+L+ 
Sbjct: 96  ETGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIE 155
Query: 725 GEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
             +  ++Q      I + APE    GR + + DV SFGI+
Sbjct: 156 DNEXTARQGAKFP-IKWTAPEAALYGRFTIKSDVWSFGIL 194

>pdb|3OEZ|A Chain A, Crystal Structure Of The L317i Mutant Of The Chicken C-Src Tyrosine Kinase Domain Complexed With Imatinib Length = 286

Iteration: 1
 Score = 60.8 bits (146), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 56/100 (56%), Gaps = 1/100 (1%)
Query: 665 EVRKRIRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLS 724
           E+ K +R   LV + +     + +   +  +H DL+ +N+L+ E++V  ++DFG+A+L+ 
Sbjct: 106 EMGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIE 165
Query: 725 GEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
             +  ++Q      I + APE    GR + + DV SFGI+
Sbjct: 166 DNEYTARQGAKFP-IKWTAPEAALYGRFTIKSDVWSFGIL 204

>pdb|3G6H|A Chain A, Src Thr338ile Inhibited In The Dfg-Asp-Out Conformation Length = 286

Iteration: 1
 Score = 60.8 bits (146), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 56/100 (56%), Gaps = 1/100 (1%)
Query: 665 EVRKRIRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLS 724
           E+ K +R   LV + +     + +   +  +H DL+ +N+L+ E++V  ++DFG+A+L+ 
Sbjct: 106 EMGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIE 165
Query: 725 GEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
             +  ++Q      I + APE    GR + + DV SFGI+
Sbjct: 166 DNEYTARQGAKFP-IKWTAPEAALYGRFTIKSDVWSFGIL 204

>pdb|2QQ7|A Chain A, Crystal Structure Of Drug Resistant Src Kinase Domain With Irreversible Inhibitor Length = 286

Iteration: 1
 Score = 60.8 bits (146), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 56/100 (56%), Gaps = 1/100 (1%)
Query: 665 EVRKRIRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLS 724
           E+ K +R   LV + +     + +   +  +H DL+ +N+L+ E++V  ++DFG+A+L+ 
Sbjct: 106 EMGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIE 165
Query: 725 GEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
             +  ++Q      I + APE    GR + + DV SFGI+
Sbjct: 166 DNEYTARQGAKFP-IKWTAPEAALYGRFTIKSDVWSFGIL 204

>pdb|2HWO|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With Covalent Inhibitor Length = 286

Iteration: 1
 Score = 60.8 bits (146), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 56/100 (56%), Gaps = 1/100 (1%)
Query: 665 EVRKRIRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLS 724
           E+ K +R   LV + +     + +   +  +H DL+ +N+L+ E++V  ++DFG+A+L+ 
Sbjct: 106 EMGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIE 165
Query: 725 GEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
             +  ++Q      I + APE    GR + + DV SFGI+
Sbjct: 166 DNEYTARQGAKFP-IKWTAPEAALYGRFTIKSDVWSFGIL 204

>pdb|3SVV|A Chain A, Crystal Structure Of T338c C-Src Covalently Bound To Vinylsulfonamide- Pyrazolopyrimidine 9 Length = 286

Iteration: 1
 Score = 60.8 bits (146), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 56/100 (56%), Gaps = 1/100 (1%)
Query: 665 EVRKRIRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLS 724
           E+ K +R   LV + +     + +   +  +H DL+ +N+L+ E++V  ++DFG+A+L+ 
Sbjct: 106 EMGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIE 165
Query: 725 GEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
             +  ++Q      I + APE    GR + + DV SFGI+
Sbjct: 166 DNEYTARQGAKFP-IKWTAPEAALYGRFTIKSDVWSFGIL 204

>pdb|1KSW|A Chain A, Structure Of Human C-Src Tyrosine Kinase (Thr338gly Mutant) In Complex With N6-Benzyl Adp Length = 452

Iteration: 1
 Score = 60.5 bits (145), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 55/100 (55%), Gaps = 1/100 (1%)
Query: 665 EVRKRIRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLS 724
           E  K +R   LV + +     + +   +  +H DL+ +N+L+ E++V  ++DFG+A+L+ 
Sbjct: 272 ETGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIE 331
Query: 725 GEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
             +  ++Q      I + APE    GR + + DV SFGI+
Sbjct: 332 DNEYTARQGAKFP-IKWTAPEAALYGRFTIKSDVWSFGIL 370

>pdb|1FMK|A Chain A, Crystal Structure Of Human Tyrosine-Protein Kinase C-Src Length = 452

Iteration: 1
 Score = 60.5 bits (145), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 55/100 (55%), Gaps = 1/100 (1%)
Query: 665 EVRKRIRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLS 724
           E  K +R   LV + +     + +   +  +H DL+ +N+L+ E++V  ++DFG+A+L+ 
Sbjct: 272 ETGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIE 331
Query: 725 GEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
             +  ++Q      I + APE    GR + + DV SFGI+
Sbjct: 332 DNEYTARQGAKFP-IKWTAPEAALYGRFTIKSDVWSFGIL 370

>pdb|1Y57|A Chain A, Structure Of Unphosphorylated C-Src In Complex With An Inhibitor Length = 452

Iteration: 1
 Score = 60.5 bits (145), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 55/100 (55%), Gaps = 1/100 (1%)
Query: 665 EVRKRIRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLS 724
           E  K +R   LV + +     + +   +  +H DL+ +N+L+ E++V  ++DFG+A+L+ 
Sbjct: 272 ETGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIE 331
Query: 725 GEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
             +  ++Q      I + APE    GR + + DV SFGI+
Sbjct: 332 DNEYTARQGAKFP-IKWTAPEAALYGRFTIKSDVWSFGIL 370

>pdb|2O8Y|A Chain A, Apo Irak4 Kinase Domain Length = 298

Iteration: 1
 Score = 60.5 bits (145), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 49/88 (55%), Gaps = 1/88 (1%)
Query: 677 KIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTL 736
           KI   +   ++F H    IH D+K +N+LLDE   A ISDFG+A+      Q    ++ +
Sbjct: 128 KIAQGAANGINFLHENHHIHRDIKSANILLDEAFTAKISDFGLARASEKFAQXVXXSRIV 187
Query: 737 ATIGYMAPEYGTKGRVSTRGDVCSFGII 764
            T  Y APE   +G ++ + D+ SFG++
Sbjct: 188 GTTAYXAPE-ALRGEITPKSDIYSFGVV 214

>pdb|2BDF|A Chain A, Src Kinase In Complex With Inhibitor Ap23451 Length = 279

Iteration: 1
 Score = 60.5 bits (145), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 55/100 (55%), Gaps = 1/100 (1%)
Query: 665 EVRKRIRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLS 724
           E  K +R   LV + +     + +   +  +H DL+ +N+L+ E++V  ++DFG+A+L+ 
Sbjct: 99  ETGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIE 158
Query: 725 GEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
             +  ++Q      I + APE    GR + + DV SFGI+
Sbjct: 159 DNEYTARQGAKFP-IKWTAPEAALYGRFTIKSDVWSFGIL 197

>pdb|2H8H|A Chain A, Src Kinase In Complex With A Quinazoline Inhibitor Length = 535

Iteration: 1
 Score = 60.5 bits (145), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 55/100 (55%), Gaps = 1/100 (1%)
Query: 665 EVRKRIRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLS 724
           E  K +R   LV + +     + +   +  +H DL+ +N+L+ E++V  ++DFG+A+L+ 
Sbjct: 355 ETGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIE 414
Query: 725 GEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
             +  ++Q      I + APE    GR + + DV SFGI+
Sbjct: 415 DNEYTARQGAKFP-IKWTAPEAALYGRFTIKSDVWSFGIL 453

>pdb|1YOJ|A Chain A, Crystal Structure Of Src Kinase Domain Length = 283

Iteration: 1
 Score = 60.1 bits (144), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 55/100 (55%), Gaps = 1/100 (1%)
Query: 665 EVRKRIRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLS 724
           E  K +R   LV + +     + +   +  +H DL+ +N+L+ E++V  ++DFG+A+L+ 
Sbjct: 103 ETGKYLRLPQLVDMSAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIE 162
Query: 725 GEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
             +  ++Q      I + APE    GR + + DV SFGI+
Sbjct: 163 DNEWTARQGAKFP-IKWTAPEAALYGRFTIKSDVWSFGIL 201

>pdb|1YOL|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With Cgp77675 Length = 283

Iteration: 1
 Score = 60.1 bits (144), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 55/100 (55%), Gaps = 1/100 (1%)
Query: 665 EVRKRIRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLS 724
           E  K +R   LV + +     + +   +  +H DL+ +N+L+ E++V  ++DFG+A+L+ 
Sbjct: 103 ETGKYLRLPQLVDMSAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIE 162
Query: 725 GEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
             +  ++Q      I + APE    GR + + DV SFGI+
Sbjct: 163 DNEYTARQGAKFP-IKWTAPEAALYGRFTIKSDVWSFGIL 201

>pdb|3F69|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis Pknb Mutant Kinase Domain In Complex With Kt5720 Length = 311

Iteration: 1
 Score = 60.1 bits (144), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 52/95 (54%), Gaps = 5/95 (5%)
Query: 673 RNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQ 732
           +  +++I+ + + L+F H   IIH D+KP+N+L+       + DFGIA+ ++  D  +  
Sbjct: 116 KRAIEVIADACQALNFSHQNGIIHRDVKPANILISATNAVKVVDFGIARAIA--DSGNSV 173
Query: 733 TQTLATIG---YMAPEYGTKGRVSTRGDVCSFGII 764
            QT A IG   Y++PE      V  R DV S G +
Sbjct: 174 XQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCV 208

>pdb|3GEQ|A Chain A, Structural Basis For The Chemical Rescue Of Src Kinase Activity Length = 286

Iteration: 1
 Score = 59.7 bits (143), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 55/100 (55%), Gaps = 1/100 (1%)
Query: 665 EVRKRIRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLS 724
           E+ K +R   LV + +     + +   +  +H DL  +N+L+ E++V  ++DFG+A+L+ 
Sbjct: 106 EMGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLAAANILVGENLVCKVADFGLARLIE 165
Query: 725 GEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
             +  ++Q      I + APE    GR + + DV SFGI+
Sbjct: 166 DNEYTARQGAKFP-IKWTAPEAALYGRFTIKSDVWSFGIL 204

>pdb|4EQM|A Chain A, Structural Analysis Of Staphylococcus Aureus SerineTHREONINE KINASE Pknb Length = 294

Iteration: 1
 Score = 59.3 bits (142), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 48/179 (26%), Positives = 72/179 (40%), Gaps = 49/179 (27%)
Query: 642 MEVAVKVFH---QQYERALKSFEDECEVRKRIRHRNLVKIISSS---------LEYLH-- 687
           ++VA+K      ++ E  LK FE E     ++ H+N+V +I            +EY+   
Sbjct: 37  IKVAIKAIFIPPREKEETLKRFEREVHNSSQLSHQNIVSMIDVDEEDDCYYLVMEYIEGP 96
Query: 688 -----------------------------FGHSIPIIHCDLKPSNVLLDEDMVAHISDFG 718
                                          H + I+H D+KP N+L+D +    I DFG
Sbjct: 97  TLSEYIESHGPLSVDTAINFTNQILDGIKHAHDMRIVHRDIKPQNILIDSNKTLKIFDFG 156
Query: 719 IAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGE 777
           IAK LS E  L++    L T+ Y +PE           D+ S GI+        M VGE
Sbjct: 157 IAKALS-ETSLTQTNHVLGTVQYFSPEQAKGEATDECTDIYSIGIV-----LYEMLVGE 209

>pdb|2PTK|A Chain A, Chicken Src Tyrosine Kinase Length = 453

Iteration: 1
 Score = 59.3 bits (142), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 55/100 (55%), Gaps = 1/100 (1%)
Query: 665 EVRKRIRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLS 724
           E+ K +R   LV + +     + +   +  +H DL+ +N+L+ E++V  ++DFG+ +L+ 
Sbjct: 273 EMGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLGRLIE 332
Query: 725 GEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
             +  ++Q      I + APE    GR + + DV SFGI+
Sbjct: 333 DNEYTARQGAKFP-IKWTAPEAALYGRFTIKSDVWSFGIL 371

>pdb|2DQ7|X Chain X, Crystal Structure Of Fyn Kinase Domain Complexed With Staurosporine Length = 283

Iteration: 1
 Score = 57.0 bits (136), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 674 NLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQT 733
           NLV + +     + +   +  IH DL+ +N+L+   ++  I+DFG+A+L+   +  ++Q 
Sbjct: 106 NLVDMAAQVAAGMAYIERMNYIHRDLRSANILVGNGLICKIADFGLARLIEDNEXTARQG 165
Query: 734 QTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
                I + APE    GR + + DV SFGI+
Sbjct: 166 AKFP-IKWTAPEAALYGRFTIKSDVWSFGIL 195

>pdb|1A06|A Chain A, Calmodulin-Dependent Protein Kinase From Rat Length = 332

Iteration: 1
 Score = 56.2 bits (134), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 36/96 (37%), Positives = 53/96 (55%), Gaps = 6/96 (6%)
Query: 673 RNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVL---LDEDMVAHISDFGIAKLLSGEDQL 729
           R+  ++I   L+ + + H + I+H DLKP N+L   LDED    ISDFG++K+   ED  
Sbjct: 116 RDASRLIFQVLDAVKYLHDLGIVHRDLKPENLLYYSLDEDSKIMISDFGLSKM---EDPG 172
Query: 730 SKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIIS 765
           S  +    T GY+APE   +   S   D  S G+I+
Sbjct: 173 SVLSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVIA 208

>pdb|4FG9|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent Protein Kinase I 1-320 In Complex With Atp Length = 320

Iteration: 1
 Score = 56.2 bits (134), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 36/96 (37%), Positives = 53/96 (55%), Gaps = 6/96 (6%)
Query: 673 RNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVL---LDEDMVAHISDFGIAKLLSGEDQL 729
           R+  ++I   L+ + + H + I+H DLKP N+L   LDED    ISDFG++K+   ED  
Sbjct: 116 RDASRLIFQVLDAVKYLHDLGIVHRDLKPENLLYYSLDEDSKIMISDFGLSKM---EDPG 172
Query: 730 SKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIIS 765
           S  +    T GY+APE   +   S   D  S G+I+
Sbjct: 173 SVLSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVIA 208

>pdb|4FR4|A Chain A, Crystal Structure Of Human SerineTHREONINE-Protein Kinase 32a (Yank1) Length = 384

Iteration: 1
 Score = 56.2 bits (134), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 45/124 (36%), Positives = 61/124 (49%), Gaps = 15/124 (12%)
Query: 682 SLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGY 741
           +L+YL    +  IIH D+KP N+LLDE    HI+DF IA +L  E Q+   T    T  Y
Sbjct: 127 ALDYLQ---NQRIIHRDMKPDNILLDEHGHVHITDFNIAAMLPRETQI---TTMAGTKPY 180
Query: 742 MAPEYGTKGRVSTRGDVCSFGI--ISGGKETRSMTVGETCTPVR---ESKYEVHPATTTI 796
           MAPE  +    S +G   SF +   S G     +  G     +R    SK  VH   TT+
Sbjct: 181 MAPEMFS----SRKGAGYSFAVDWWSLGVTAYELLRGRRPYHIRSSTSSKEIVHTFETTV 236
Query: 797 MEHP 800
           + +P
Sbjct: 237 VTYP 240

>pdb|4FG8|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent Protein Kinase I 1-315 In Complex With Atp Length = 315

Iteration: 1
 Score = 56.2 bits (134), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 36/96 (37%), Positives = 53/96 (55%), Gaps = 6/96 (6%)
Query: 673 RNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVL---LDEDMVAHISDFGIAKLLSGEDQL 729
           R+  ++I   L+ + + H + I+H DLKP N+L   LDED    ISDFG++K+   ED  
Sbjct: 116 RDASRLIFQVLDAVKYLHDLGIVHRDLKPENLLYYSLDEDSKIMISDFGLSKM---EDPG 172
Query: 730 SKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIIS 765
           S  +    T GY+APE   +   S   D  S G+I+
Sbjct: 173 SVLSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVIA 208

>pdb|4FG7|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent Protein Kinase I 1-293 In Complex With Atp Length = 293

Iteration: 1
 Score = 55.8 bits (133), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 36/96 (37%), Positives = 53/96 (55%), Gaps = 6/96 (6%)
Query: 673 RNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVL---LDEDMVAHISDFGIAKLLSGEDQL 729
           R+  ++I   L+ + + H + I+H DLKP N+L   LDED    ISDFG++K+   ED  
Sbjct: 116 RDASRLIFQVLDAVKYLHDLGIVHRDLKPENLLYYSLDEDSKIMISDFGLSKM---EDPG 172
Query: 730 SKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIIS 765
           S  +    T GY+APE   +   S   D  S G+I+
Sbjct: 173 SVLSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVIA 208

>pdb|2ZV2|A Chain A, Crystal Structure Of Human CalciumCALMODULIN-Dependent Protein Kinase Kinase 2, Beta, Camkk2 Kinase Domain In Complex With Sto-609 Length = 298

Iteration: 1
 Score = 55.8 bits (133), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 37/102 (36%), Positives = 56/102 (54%), Gaps = 12/102 (11%)
Query: 665 EVRKRIRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLS 724
           E + R   ++L+K     +EYLH+     IIH D+KPSN+L+ ED    I+DFG++    
Sbjct: 136 EDQARFYFQDLIK----GIEYLHYQK---IIHRDIKPSNLLVGEDGHIKIADFGVSNEFK 188
Query: 725 GEDQLSKQTQTLATIGYMAPEYGTKGRVSTRG---DVCSFGI 763
           G D L   + T+ T  +MAPE  ++ R    G   DV + G+
Sbjct: 189 GSDALL--SNTVGTPAFMAPESLSETRKIFSGKALDVWAMGV 228

>pdb|3RZF|A Chain A, Crystal Structure Of Inhibitor Of Kappab Kinase Beta (I4122) Length = 677

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/114 (35%), Positives = 60/114 (52%), Gaps = 10/114 (8%)
Query: 655 RALKSFEDECEVRKRIRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLD---EDMV 711
           + L  FE+ C + K    R L+  ISS+L YLH      IIH DLKP N++L    + ++
Sbjct: 108 KYLNQFENCCGL-KEGPIRTLLSDISSALRYLHENR---IIHRDLKPENIVLQPGPQRLI 163
Query: 712 AHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIIS 765
             I D G AK L   DQ    T+ + T+ Y+APE   + + +   D  SFG ++
Sbjct: 164 HKIIDLGYAKEL---DQGELCTEFVGTLQYLAPELLEQKKYTVTVDYWSFGTLA 214

>pdb|3QA8|A Chain A, Crystal Structure Of Inhibitor Of Kappa B Kinase Beta Length = 676

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/114 (35%), Positives = 60/114 (52%), Gaps = 10/114 (8%)
Query: 655 RALKSFEDECEVRKRIRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLD---EDMV 711
           + L  FE+ C + K    R L+  ISS+L YLH      IIH DLKP N++L    + ++
Sbjct: 107 KYLNQFENCCGL-KEGPIRTLLSDISSALRYLHENR---IIHRDLKPENIVLQPGPQRLI 162
Query: 712 AHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIIS 765
             I D G AK L   DQ    T+ + T+ Y+APE   + + +   D  SFG ++
Sbjct: 163 HKIIDLGYAKEL---DQGELCTEFVGTLQYLAPELLEQKKYTVTVDYWSFGTLA 213

>pdb|3UBD|A Chain A, Structure Of N-Terminal Domain Of Rsk2 Kinase In Complex With Flavonoid Glycoside Sl0101 Length = 304

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Query: 690 HSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTK 749
           HS+ II+ DLKP N+LLDE+    ++DFG++K     D   K      T+ YMAPE   +
Sbjct: 143 HSLGIIYRDLKPENILLDEEGHIKLTDFGLSK--ESIDHEKKAYSFCGTVEYMAPEVVNR 200
Query: 750 GRVSTRGDVCSFGII 764
              +   D  SFG++
Sbjct: 201 RGHTQSADWWSFGVL 215

>pdb|4EL9|A Chain A, Structure Of N-Terminal Kinase Domain Of Rsk2 With Afzelin Length = 305

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Query: 690 HSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTK 749
           HS+ II+ DLKP N+LLDE+    ++DFG++K     D   K      T+ YMAPE   +
Sbjct: 144 HSLGIIYRDLKPENILLDEEGHIKLTDFGLSK--ESIDHEKKAYSFCGTVEYMAPEVVNR 201
Query: 750 GRVSTRGDVCSFGII 764
              +   D  SFG++
Sbjct: 202 RGHTQSADWWSFGVL 216

>pdb|3G51|A Chain A, Structural Diversity Of The Active Conformation Of The N- Terminal Kinase Domain Of P90 Ribosomal S6 Kinase 2 Length = 325

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Query: 690 HSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTK 749
           HS+ II+ DLKP N+LLDE+    ++DFG++K     D   K      T+ YMAPE   +
Sbjct: 143 HSLGIIYRDLKPENILLDEEGHIKLTDFGLSK--ESIDHEKKAYSFCGTVEYMAPEVVNR 200
Query: 750 GRVSTRGDVCSFGII 764
              +   D  SFG++
Sbjct: 201 RGHTQSADWWSFGVL 215

>pdb|2Z7Q|A Chain A, Crystal Structure Of The N-Terminal Kinase Domain Of Human Rsk-1 Bound To Amp-Pcp Length = 321

Iteration: 1
 Score = 54.3 bits (129), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Query: 690 HSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTK 749
           HS+ II+ DLKP N+LLDE+    ++DFG++K     D   K      T+ YMAPE   +
Sbjct: 147 HSLGIIYRDLKPENILLDEEGHIKLTDFGLSK--EAIDHEKKAYSFCGTVEYMAPEVVNR 204
Query: 750 GRVSTRGDVCSFGII 764
              S   D  S+G++
Sbjct: 205 QGHSHSADWWSYGVL 219

>pdb|1YHV|A Chain A, Crystal Structure Of Pak1 Kinase Domain With Two Point Mutations (K299r, T423e) Length = 297

Iteration: 1
 Score = 54.3 bits (129), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 49/92 (53%), Gaps = 2/92 (2%)
Query: 674 NLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQT 733
            +  +    L+ L F HS  +IH D+K  N+LL  D    ++DFG    ++ E   SK++
Sbjct: 117 QIAAVCRECLQALEFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQ--SKRS 174
Query: 734 QTLATIGYMAPEYGTKGRVSTRGDVCSFGIIS 765
           + + T  +MAPE  T+     + D+ S GI++
Sbjct: 175 EMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMA 206

>pdb|3II5|A Chain A, The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimidine Inhibitor Length = 306

Iteration: 1
 Score = 54.3 bits (129), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 49/94 (52%), Gaps = 3/94 (3%)
Query: 674 NLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQT 733
            L+ I   + + + + H+  IIH DLK +N+ L ED+   I DFG+A + S      +  
Sbjct: 132 KLIDIARQTAQGMDYLHAKSIIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFE 191
Query: 734 QTLATIGYMAPE---YGTKGRVSTRGDVCSFGII 764
           Q   +I +MAPE      K   S + DV +FGI+
Sbjct: 192 QLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIV 225

>pdb|3D4Q|A Chain A, Pyrazole-Based Inhibitors Of B-Raf Kinase Length = 307

Iteration: 1
 Score = 54.3 bits (129), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 49/94 (52%), Gaps = 3/94 (3%)
Query: 674 NLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQT 733
            L+ I   + + + + H+  IIH DLK +N+ L ED+   I DFG+A + S      +  
Sbjct: 133 KLIDIARQTAQGMDYLHAKSIIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFE 192
Query: 734 QTLATIGYMAPE---YGTKGRVSTRGDVCSFGII 764
           Q   +I +MAPE      K   S + DV +FGI+
Sbjct: 193 QLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIV 226

>pdb|1UWH|A Chain A, The Complex Of Wild Type B-Raf And Bay439006 Length = 276

Iteration: 1
 Score = 54.3 bits (129), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 49/94 (52%), Gaps = 3/94 (3%)
Query: 674 NLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQT 733
            L+ I   + + + + H+  IIH DLK +N+ L ED+   I DFG+A + S      +  
Sbjct: 105 KLIDIARQTAQGMDYLHAKSIIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFE 164
Query: 734 QTLATIGYMAPE---YGTKGRVSTRGDVCSFGII 764
           Q   +I +MAPE      K   S + DV +FGI+
Sbjct: 165 QLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIV 198

>pdb|3Q96|A Chain A, B-Raf Kinase Domain In Complex With A Tetrahydronaphthalene Inhibitor Length = 282

Iteration: 1
 Score = 54.3 bits (129), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 49/94 (52%), Gaps = 3/94 (3%)
Query: 674 NLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQT 733
            L+ I   + + + + H+  IIH DLK +N+ L ED+   I DFG+A + S      +  
Sbjct: 107 KLIDIARQTAQGMDYLHAKSIIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFE 166
Query: 734 QTLATIGYMAPE---YGTKGRVSTRGDVCSFGII 764
           Q   +I +MAPE      K   S + DV +FGI+
Sbjct: 167 QLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIV 200

>pdb|4H58|A Chain A, Braf In Complex With Compound 3 Length = 275

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 49/94 (52%), Gaps = 3/94 (3%)
Query: 674 NLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQT 733
            L+ I   + + + + H+  IIH DLK +N+ L ED+   I DFG+A + S      +  
Sbjct: 105 KLIDIARQTAQGMDYLHAKSIIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFE 164
Query: 734 QTLATIGYMAPE---YGTKGRVSTRGDVCSFGII 764
           Q   +I +MAPE      K   S + DV +FGI+
Sbjct: 165 QLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIV 198

>pdb|2FB8|A Chain A, Structure Of The B-Raf Kinase Domain Bound To Sb-590885 Length = 281

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 49/94 (52%), Gaps = 3/94 (3%)
Query: 674 NLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQT 733
            L+ I   + + + + H+  IIH DLK +N+ L ED+   I DFG+A + S      +  
Sbjct: 110 KLIDIARQTAQGMDYLHAKSIIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFE 169
Query: 734 QTLATIGYMAPE---YGTKGRVSTRGDVCSFGII 764
           Q   +I +MAPE      K   S + DV +FGI+
Sbjct: 170 QLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIV 203

>pdb|4DBN|A Chain A, Crystal Structure Of The Kinase Domain Of Human B-Raf With A [1, 3]thiazolo[5,4-B]pyridine Derivative Length = 284

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 49/94 (52%), Gaps = 3/94 (3%)
Query: 674 NLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQT 733
            L+ I   + + + + H+  IIH DLK +N+ L ED+   I DFG+A + S      +  
Sbjct: 110 KLIDIARQTAQGMDYLHAKSIIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFE 169
Query: 734 QTLATIGYMAPE---YGTKGRVSTRGDVCSFGII 764
           Q   +I +MAPE      K   S + DV +FGI+
Sbjct: 170 QLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIV 203

>pdb|3TUB|A Chain A, Crystal Structure Of Syk Kinase Domain With 1-(5-(6,7- Dimethoxyquinolin-4-Yloxy)pyridin-2-Yl)-3-((1r,2s)-2- Phenylcyclopropyl)urea Length = 293

Iteration: 1
 Score = 53.9 bits (128), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 60/121 (49%), Gaps = 13/121 (10%)
Query: 668 KRIRHRNLVKII---SSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLS 724
           + ++ +N+++++   S  ++YL   +    +H DL   NVLL     A ISDFG++K L 
Sbjct: 122 RHVKDKNIIELVHQVSMGMKYLEESN---FVHRDLAARNVLLVTQHYAKISDFGLSKALR 178
Query: 725 GEDQLSK-QTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII------SGGKETRSMTVGE 777
            ++   K QT     + + APE     + S++ DV SFG++       G K  R M   E
Sbjct: 179 ADENYYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSE 238
Query: 778 T 778
Sbjct: 239 V 239

>pdb|3VF8|A Chain A, Crystal Structure Of Spleen Tyrosine Kinase Syk Catalytic Domain With Pyrazolylbenzimidazole Inhibitor 416 Length = 299

Iteration: 1
 Score = 53.9 bits (128), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 60/121 (49%), Gaps = 13/121 (10%)
Query: 668 KRIRHRNLVKII---SSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLS 724
           + ++ +N+++++   S  ++YL   +    +H DL   NVLL     A ISDFG++K L 
Sbjct: 122 RHVKDKNIIELVHQVSMGMKYLEESN---FVHRDLAARNVLLVTQHYAKISDFGLSKALR 178
Query: 725 GEDQLSK-QTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII------SGGKETRSMTVGE 777
            ++   K QT     + + APE     + S++ DV SFG++       G K  R M   E
Sbjct: 179 ADENYYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSE 238
Query: 778 T 778
Sbjct: 239 V 239

>pdb|3SRV|B Chain B, Crystal Structure Of Spleen Tyrosine Kinase (Syk) In Complex With A Diaminopyrimidine Carboxamide Inhibitor Length = 277

Iteration: 1
 Score = 53.5 bits (127), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 56/118 (47%), Gaps = 7/118 (5%)
Query: 668 KRIRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGED 727
           + ++ +N+++++      + +      +H DL   NVLL     A ISDFG++K L  ++
Sbjct: 106 RHVKDKNIIELVHQVSMGMKYLEESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADE 165
Query: 728 QLSK-QTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII------SGGKETRSMTVGET 778
              K QT     + + APE     + S++ DV SFG++       G K  R M   E 
Sbjct: 166 NYYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSEV 223

>pdb|3EMG|A Chain A, Discovery And Sar Of Novel 4-Thiazolyl-2- Phenylaminopyrimidines As Potent Inhibitors Of Spleen Tyrosine Kinase (Syk) Length = 291

Iteration: 1
 Score = 53.5 bits (127), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 56/118 (47%), Gaps = 7/118 (5%)
Query: 668 KRIRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGED 727
           + ++ +N+++++      + +      +H DL   NVLL     A ISDFG++K L  ++
Sbjct: 120 RHVKDKNIIELVHQVSMGMKYLEESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADE 179
Query: 728 QLSK-QTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII------SGGKETRSMTVGET 778
              K QT     + + APE     + S++ DV SFG++       G K  R M   E 
Sbjct: 180 NYYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSEV 237

>pdb|1XBA|A Chain A, Crystal Structure Of Apo Syk Tyrosine Kinase Domain Length = 291

Iteration: 1
 Score = 53.5 bits (127), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 56/118 (47%), Gaps = 7/118 (5%)
Query: 668 KRIRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGED 727
           + ++ +N+++++      + +      +H DL   NVLL     A ISDFG++K L  ++
Sbjct: 112 RHVKDKNIIELVHQVSMGMKYLEESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADE 171
Query: 728 QLSK-QTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII------SGGKETRSMTVGET 778
              K QT     + + APE     + S++ DV SFG++       G K  R M   E 
Sbjct: 172 NYYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSEV 229

>pdb|3SRV|A Chain A, Crystal Structure Of Spleen Tyrosine Kinase (Syk) In Complex With A Diaminopyrimidine Carboxamide Inhibitor Length = 277

Iteration: 1
 Score = 53.5 bits (127), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 56/118 (47%), Gaps = 7/118 (5%)
Query: 668 KRIRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGED 727
           + ++ +N+++++      + +      +H DL   NVLL     A ISDFG++K L  ++
Sbjct: 106 RHVKDKNIIELVHQVSMGMKYLEESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADE 165
Query: 728 QLSK-QTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII------SGGKETRSMTVGET 778
              K QT     + + APE     + S++ DV SFG++       G K  R M   E 
Sbjct: 166 NXYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSEV 223

>pdb|3FXZ|A Chain A, Crystal Structure Of Pak1 Kinase Domain With Ruthenium Complex Lambda-Fl172 Length = 297

Iteration: 1
 Score = 53.1 bits (126), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 2/92 (2%)
Query: 674 NLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQT 733
            +  +    L+ L F HS  +IH D+K  N+LL  D    ++DFG    ++ E   SK++
Sbjct: 117 QIAAVCRECLQALEFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQ--SKRS 174
Query: 734 QTLATIGYMAPEYGTKGRVSTRGDVCSFGIIS 765
             + T  +MAPE  T+     + D+ S GI++
Sbjct: 175 XMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMA 206

>pdb|3Q52|A Chain A, Structure Of Phosphorylated Pak1 Kinase Domain Length = 306

Iteration: 1
 Score = 53.1 bits (126), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 2/92 (2%)
Query: 674 NLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQT 733
            +  +    L+ L F HS  +IH D+K  N+LL  D    ++DFG    ++ E   SK++
Sbjct: 118 QIAAVCRECLQALEFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQ--SKRS 175
Query: 734 QTLATIGYMAPEYGTKGRVSTRGDVCSFGIIS 765
             + T  +MAPE  T+     + D+ S GI++
Sbjct: 176 XMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMA 207

>pdb|3UGC|A Chain A, Structural Basis Of Jak2 Inhibition By The Type Ii Inhibtor Nvp-Bbt594 Length = 295

Iteration: 1
 Score = 53.1 bits (126), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 69/168 (41%), Gaps = 44/168 (26%)
Query: 641 GMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVKI-----------ISSSLEYLHFG 689
           G  VAVK      E  L+ FE E E+ K ++H N+VK            +   +EYL +G
Sbjct: 39  GEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYG 98
Query: 690 --------HSIPI------------------------IHCDLKPSNVLLDEDMVAHISDF 717
                   H   I                        IH DL   N+L++ +    I DF
Sbjct: 99  SLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGTKRYIHRDLATRNILVENENRVKIGDF 158
Query: 718 GIAKLLSGEDQLSKQTQT-LATIGYMAPEYGTKGRVSTRGDVCSFGII 764
           G+ K+L  + +  K  +   + I + APE  T+ + S   DV SFG++
Sbjct: 159 GLTKVLPQDKEFFKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVV 206

>pdb|2XA4|A Chain A, Inhibitors Of Jak2 Kinase Domain Length = 298

Iteration: 1
 Score = 53.1 bits (126), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 70/168 (41%), Gaps = 44/168 (26%)
Query: 641 GMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVKI-----------ISSSLEYLHFG 689
           G  VAVK      E  L+ FE E E+ K ++H N+VK            +   +EYL +G
Sbjct: 42  GEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYG 101
Query: 690 --------HSIPI------------------------IHCDLKPSNVLLDEDMVAHISDF 717
                   H+  I                        IH DL   N+L++ +    I DF
Sbjct: 102 SLRDYLQAHAERIDHIKLLQYTSQICKGMEYLGTKRYIHRDLATRNILVENENRVKIGDF 161
Query: 718 GIAKLLSGEDQLSKQTQT-LATIGYMAPEYGTKGRVSTRGDVCSFGII 764
           G+ K+L  + +  K  +   + I + APE  T+ + S   DV SFG++
Sbjct: 162 GLTKVLPQDKEXXKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVV 209

>pdb|1F3M|C Chain C, Crystal Structure Of Human SerineTHREONINE KINASE PAK1 Length = 297

Iteration: 1
 Score = 53.1 bits (126), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 2/92 (2%)
Query: 674 NLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQT 733
            +  +    L+ L F HS  +IH D+K  N+LL  D    ++DFG    ++ E   SK++
Sbjct: 117 QIAAVCRECLQALEFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQ--SKRS 174
Query: 734 QTLATIGYMAPEYGTKGRVSTRGDVCSFGIIS 765
             + T  +MAPE  T+     + D+ S GI++
Sbjct: 175 TMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMA 206

>pdb|3PPZ|A Chain A, Crystal Structure Of Ctr1 Kinase Domain In Complex With Staurosporine Length = 309

Iteration: 1
 Score = 53.1 bits (126), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 55/103 (53%), Gaps = 6/103 (5%)
Query: 662 DECEVRKRIRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAK 721
           ++ + R+R+   ++   ++  + YLH   + PI+H DLK  N+L+D+     + DFG+++
Sbjct: 132 EQLDERRRL---SMAYDVAKGMNYLH-NRNPPIVHRDLKSPNLLVDKKYTVKVCDFGLSR 187
Query: 722 LLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
           L +     SK      T  +MAPE       + + DV SFG+I
Sbjct: 188 LKASXFLXSKXAA--GTPEWMAPEVLRDEPSNEKSDVYSFGVI 228

>pdb|4FL3|A Chain A, Structural And Biophysical Characterization Of The Syk Activation Switch Length = 635

Iteration: 1
 Score = 52.8 bits (125), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 36/120 (30%), Positives = 60/120 (50%), Gaps = 13/120 (10%)
Query: 668 KRIRHRNLVKII---SSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLS 724
           + ++ +N+++++   S  ++YL   +    +H DL   NVLL     A ISDFG++K L 
Sbjct: 464 RHVKDKNIIELVHQVSMGMKYLEESN---FVHRDLAARNVLLVTQHYAKISDFGLSKALR 520
Query: 725 GEDQLSK-QTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII------SGGKETRSMTVGE 777
            ++   K QT     + + APE     + S++ DV SFG++       G K  R M   E
Sbjct: 521 ADENYYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSE 580

>pdb|2W1I|A Chain A, Structure Determination Of Aurora Kinase In Complex With Inhibitor Length = 326

Iteration: 1
 Score = 52.8 bits (125), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 69/168 (41%), Gaps = 44/168 (26%)
Query: 641 GMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVKI-----------ISSSLEYLHFG 689
           G  VAVK      E  L+ FE E E+ K ++H N+VK            +   +EYL +G
Sbjct: 70  GEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYG 129
Query: 690 --------HSIPI------------------------IHCDLKPSNVLLDEDMVAHISDF 717
                   H   I                        IH DL   N+L++ +    I DF
Sbjct: 130 SLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGTKRYIHRDLATRNILVENENRVKIGDF 189
Query: 718 GIAKLLSGEDQLSKQTQT-LATIGYMAPEYGTKGRVSTRGDVCSFGII 764
           G+ K+L  + +  K  +   + I + APE  T+ + S   DV SFG++
Sbjct: 190 GLTKVLPQDKEXXKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVV 237

>pdb|4G9R|A Chain A, B-Raf V600e Kinase Domain Bound To A Type Ii Dihydroquinazoline Inhibitor Length = 307

Iteration: 1
 Score = 52.8 bits (125), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 48/94 (51%), Gaps = 3/94 (3%)
Query: 674 NLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQT 733
            L+ I   + + + + H+  IIH DLK +N+ L ED+   I DFG+A   S      +  
Sbjct: 133 KLIDIARQTAQGMDYLHAKSIIHRDLKSNNIFLHEDLTVKIGDFGLATEKSRWSGSHQFE 192
Query: 734 QTLATIGYMAPE---YGTKGRVSTRGDVCSFGII 764
           Q   +I +MAPE      K   S + DV +FGI+
Sbjct: 193 QLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIV 226

>pdb|3Q32|A Chain A, Structure Of Janus Kinase 2 With A Pyrrolotriazine Inhibitor Length = 301

Iteration: 1
 Score = 52.8 bits (125), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 69/168 (41%), Gaps = 44/168 (26%)
Query: 641 GMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVKI-----------ISSSLEYLHFG 689
           G  VAVK      E  L+ FE E E+ K ++H N+VK            +   +EYL +G
Sbjct: 39  GEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYG 98
Query: 690 --------HSIPI------------------------IHCDLKPSNVLLDEDMVAHISDF 717
                   H   I                        IH DL   N+L++ +    I DF
Sbjct: 99  SLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGTKRYIHRDLATRNILVENENRVKIGDF 158
Query: 718 GIAKLLSGEDQLSKQTQT-LATIGYMAPEYGTKGRVSTRGDVCSFGII 764
           G+ K+L  + +  K  +   + I + APE  T+ + S   DV SFG++
Sbjct: 159 GLTKVLPQDKEXXKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVV 206

>pdb|3IDP|A Chain A, B-Raf V600e Kinase Domain In Complex With An Aminoisoquinoline Inhibitor Length = 300

Iteration: 1
 Score = 52.8 bits (125), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 48/94 (51%), Gaps = 3/94 (3%)
Query: 674 NLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQT 733
            L+ I   + + + + H+  IIH DLK +N+ L ED+   I DFG+A   S      +  
Sbjct: 125 KLIDIARQTAQGMDYLHAKSIIHRDLKSNNIFLHEDLTVKIGDFGLATEKSRWSGSHQFE 184
Query: 734 QTLATIGYMAPE---YGTKGRVSTRGDVCSFGII 764
           Q   +I +MAPE      K   S + DV +FGI+
Sbjct: 185 QLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIV 218

>pdb|3RVG|A Chain A, Crystals Structure Of Jak2 With A 1-Amino-5h-Pyrido[4,3-B]indol-4- Carboxamide Inhibitor Length = 303

Iteration: 1
 Score = 52.8 bits (125), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 69/168 (41%), Gaps = 44/168 (26%)
Query: 641 GMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVKI-----------ISSSLEYLHFG 689
           G  VAVK      E  L+ FE E E+ K ++H N+VK            +   +EYL +G
Sbjct: 43  GEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYG 102
Query: 690 --------HSIPI------------------------IHCDLKPSNVLLDEDMVAHISDF 717
                   H   I                        IH DL   N+L++ +    I DF
Sbjct: 103 SLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGTKRYIHRDLATRNILVENENRVKIGDF 162
Query: 718 GIAKLLSGEDQLSKQTQT-LATIGYMAPEYGTKGRVSTRGDVCSFGII 764
           G+ K+L  + +  K  +   + I + APE  T+ + S   DV SFG++
Sbjct: 163 GLTKVLPQDKEXXKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVV 210

>pdb|2Y7J|A Chain A, Structure Of Human Phosphorylase Kinase, Gamma 2 Length = 365

Iteration: 1
 Score = 52.8 bits (125), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 31/69 (44%), Positives = 42/69 (60%), Gaps = 5/69 (7%)
Query: 678 IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIA-KLLSGEDQLSKQTQTL 736
           I+ S LE + F H+  I+H DLKP N+LLD++M   +SDFG +  L  GE    K  +  
Sbjct: 205 IMRSLLEAVSFLHANNIVHRDLKPENILLDDNMQIRLSDFGFSCHLEPGE----KLRELC 260
Query: 737 ATIGYMAPE 745
            T GY+APE
Sbjct: 261 GTPGYLAPE 269

>pdb|3LPB|A Chain A, Crystal Structure Of Jak2 Complexed With A Potent 2,8-Diaryl Quinoxaline Inhibitor Length = 295

Iteration: 1
 Score = 52.8 bits (125), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 69/168 (41%), Gaps = 44/168 (26%)
Query: 641 GMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVKI-----------ISSSLEYLHFG 689
           G  VAVK      E  L+ FE E E+ K ++H N+VK            +   +EYL +G
Sbjct: 39  GEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYG 98
Query: 690 --------HSIPI------------------------IHCDLKPSNVLLDEDMVAHISDF 717
                   H   I                        IH DL   N+L++ +    I DF
Sbjct: 99  SLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGTKRYIHRDLATRNILVENENRVKIGDF 158
Query: 718 GIAKLLSGEDQLSKQTQT-LATIGYMAPEYGTKGRVSTRGDVCSFGII 764
           G+ K+L  + +  K  +   + I + APE  T+ + S   DV SFG++
Sbjct: 159 GLTKVLPQDKEXXKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVV 206

>pdb|3JY9|A Chain A, Janus Kinase 2 Inhibitors Length = 311

Iteration: 1
 Score = 52.8 bits (125), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 69/168 (41%), Gaps = 44/168 (26%)
Query: 641 GMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVKI-----------ISSSLEYLHFG 689
           G  VAVK      E  L+ FE E E+ K ++H N+VK            +   +EYL +G
Sbjct: 57  GEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYG 116
Query: 690 --------HSIPI------------------------IHCDLKPSNVLLDEDMVAHISDF 717
                   H   I                        IH DL   N+L++ +    I DF
Sbjct: 117 SLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGTKRYIHRDLATRNILVENENRVKIGDF 176
Query: 718 GIAKLLSGEDQLSKQTQT-LATIGYMAPEYGTKGRVSTRGDVCSFGII 764
           G+ K+L  + +  K  +   + I + APE  T+ + S   DV SFG++
Sbjct: 177 GLTKVLPQDKEXXKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVV 224

>pdb|3IO7|A Chain A, 2-Aminopyrazolo[1,5-A]pyrimidines As Potent And Selective Inhibitors Of Jak2 Length = 313

Iteration: 1
 Score = 52.8 bits (125), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 69/168 (41%), Gaps = 44/168 (26%)
Query: 641 GMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVKI-----------ISSSLEYLHFG 689
           G  VAVK      E  L+ FE E E+ K ++H N+VK            +   +EYL +G
Sbjct: 57  GEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYG 116
Query: 690 --------HSIPI------------------------IHCDLKPSNVLLDEDMVAHISDF 717
                   H   I                        IH DL   N+L++ +    I DF
Sbjct: 117 SLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGTKRYIHRDLATRNILVENENRVKIGDF 176
Query: 718 GIAKLLSGEDQLSKQTQT-LATIGYMAPEYGTKGRVSTRGDVCSFGII 764
           G+ K+L  + +  K  +   + I + APE  T+ + S   DV SFG++
Sbjct: 177 GLTKVLPQDKEXXKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVV 224

>pdb|4FL2|A Chain A, Structural And Biophysical Characterization Of The Syk Activation Switch Length = 636

Iteration: 1
 Score = 52.8 bits (125), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 36/120 (30%), Positives = 60/120 (50%), Gaps = 13/120 (10%)
Query: 668 KRIRHRNLVKII---SSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLS 724
           + ++ +N+++++   S  ++YL   +    +H DL   NVLL     A ISDFG++K L 
Sbjct: 465 RHVKDKNIIELVHQVSMGMKYLEESN---FVHRDLAARNVLLVTQHYAKISDFGLSKALR 521
Query: 725 GEDQLSK-QTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII------SGGKETRSMTVGE 777
            ++   K QT     + + APE     + S++ DV SFG++       G K  R M   E
Sbjct: 522 ADENYYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSE 581

>pdb|1UWJ|A Chain A, The Complex Of Mutant V599e B-raf And Bay439006 Length = 276

Iteration: 1
 Score = 52.8 bits (125), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 48/94 (51%), Gaps = 3/94 (3%)
Query: 674 NLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQT 733
            L+ I   + + + + H+  IIH DLK +N+ L ED+   I DFG+A   S      +  
Sbjct: 105 KLIDIARQTAQGMDYLHAKSIIHRDLKSNNIFLHEDLTVKIGDFGLATEKSRWSGSHQFE 164
Query: 734 QTLATIGYMAPE---YGTKGRVSTRGDVCSFGII 764
           Q   +I +MAPE      K   S + DV +FGI+
Sbjct: 165 QLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIV 198

>pdb|3E62|A Chain A, Fragment Based Discovery Of Jak-2 Inhibitors Length = 293

Iteration: 1
 Score = 52.8 bits (125), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 69/168 (41%), Gaps = 44/168 (26%)
Query: 641 GMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVKI-----------ISSSLEYLHFG 689
           G  VAVK      E  L+ FE E E+ K ++H N+VK            +   +EYL +G
Sbjct: 38  GEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYG 97
Query: 690 --------HSIPI------------------------IHCDLKPSNVLLDEDMVAHISDF 717
                   H   I                        IH DL   N+L++ +    I DF
Sbjct: 98  SLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGTKRYIHRDLATRNILVENENRVKIGDF 157
Query: 718 GIAKLLSGEDQLSKQTQT-LATIGYMAPEYGTKGRVSTRGDVCSFGII 764
           G+ K+L  + +  K  +   + I + APE  T+ + S   DV SFG++
Sbjct: 158 GLTKVLPQDKEXXKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVV 205

>pdb|4HGE|A Chain A, Jak2 Kinase (Jh1 Domain) In Complex With Compound 8 Length = 300

Iteration: 1
 Score = 52.8 bits (125), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 69/168 (41%), Gaps = 44/168 (26%)
Query: 641 GMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVKI-----------ISSSLEYLHFG 689
           G  VAVK      E  L+ FE E E+ K ++H N+VK            +   +EYL +G
Sbjct: 44  GEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYG 103
Query: 690 --------HSIPI------------------------IHCDLKPSNVLLDEDMVAHISDF 717
                   H   I                        IH DL   N+L++ +    I DF
Sbjct: 104 SLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGTKRYIHRDLATRNILVENENRVKIGDF 163
Query: 718 GIAKLLSGEDQLSKQTQT-LATIGYMAPEYGTKGRVSTRGDVCSFGII 764
           G+ K+L  + +  K  +   + I + APE  T+ + S   DV SFG++
Sbjct: 164 GLTKVLPQDKEXXKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVV 211

>pdb|3TJC|A Chain A, Co-Crystal Structure Of Jak2 With Thienopyridine 8 Length = 298

Iteration: 1
 Score = 52.8 bits (125), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 69/168 (41%), Gaps = 44/168 (26%)
Query: 641 GMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVKI-----------ISSSLEYLHFG 689
           G  VAVK      E  L+ FE E E+ K ++H N+VK            +   +EYL +G
Sbjct: 42  GEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYG 101
Query: 690 --------HSIPI------------------------IHCDLKPSNVLLDEDMVAHISDF 717
                   H   I                        IH DL   N+L++ +    I DF
Sbjct: 102 SLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGTKRYIHRDLATRNILVENENRVKIGDF 161
Query: 718 GIAKLLSGEDQLSKQTQT-LATIGYMAPEYGTKGRVSTRGDVCSFGII 764
           G+ K+L  + +  K  +   + I + APE  T+ + S   DV SFG++
Sbjct: 162 GLTKVLPQDKEXXKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVV 209

>pdb|4AQC|A Chain A, Triazolopyridine-Based Inhibitor Of Janus Kinase 2 Length = 301

Iteration: 1
 Score = 52.8 bits (125), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 69/168 (41%), Gaps = 44/168 (26%)
Query: 641 GMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVKI-----------ISSSLEYLHFG 689
           G  VAVK      E  L+ FE E E+ K ++H N+VK            +   +EYL +G
Sbjct: 45  GEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYG 104
Query: 690 --------HSIPI------------------------IHCDLKPSNVLLDEDMVAHISDF 717
                   H   I                        IH DL   N+L++ +    I DF
Sbjct: 105 SLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGTKRYIHRDLATRNILVENENRVKIGDF 164
Query: 718 GIAKLLSGEDQLSKQTQT-LATIGYMAPEYGTKGRVSTRGDVCSFGII 764
           G+ K+L  + +  K  +   + I + APE  T+ + S   DV SFG++
Sbjct: 165 GLTKVLPQDKEXXKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVV 212

>pdb|2B7A|A Chain A, The Structural Basis Of Janus Kinase 2 Inhibition By A Potent And Specific Pan-Janus Kinase Inhibitor Length = 293

Iteration: 1
 Score = 52.8 bits (125), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 69/168 (41%), Gaps = 44/168 (26%)
Query: 641 GMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVKI-----------ISSSLEYLHFG 689
           G  VAVK      E  L+ FE E E+ K ++H N+VK            +   +EYL +G
Sbjct: 37  GEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYG 96
Query: 690 --------HSIPI------------------------IHCDLKPSNVLLDEDMVAHISDF 717
                   H   I                        IH DL   N+L++ +    I DF
Sbjct: 97  SLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGTKRYIHRDLATRNILVENENRVKIGDF 156
Query: 718 GIAKLLSGEDQLSKQTQT-LATIGYMAPEYGTKGRVSTRGDVCSFGII 764
           G+ K+L  + +  K  +   + I + APE  T+ + S   DV SFG++
Sbjct: 157 GLTKVLPQDKEXXKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVV 204

>pdb|4E4M|A Chain A, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30 Length = 302

Iteration: 1
 Score = 52.8 bits (125), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 69/168 (41%), Gaps = 44/168 (26%)
Query: 641 GMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVKI-----------ISSSLEYLHFG 689
           G  VAVK      E  L+ FE E E+ K ++H N+VK            +   +EYL +G
Sbjct: 46  GEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYG 105
Query: 690 --------HSIPI------------------------IHCDLKPSNVLLDEDMVAHISDF 717
                   H   I                        IH DL   N+L++ +    I DF
Sbjct: 106 SLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGTKRYIHRDLATRNILVENENRVKIGDF 165
Query: 718 GIAKLLSGEDQLSKQTQT-LATIGYMAPEYGTKGRVSTRGDVCSFGII 764
           G+ K+L  + +  K  +   + I + APE  T+ + S   DV SFG++
Sbjct: 166 GLTKVLPQDKEXXKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVV 213

>pdb|1BYG|A Chain A, Kinase Domain Of Human C-Terminal Src Kinase (Csk) In Complex With Inhibitor Staurosporine Length = 278

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 46/86 (53%), Gaps = 8/86 (9%)
Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLAT 738
           +  ++EYL   +    +H DL   NVL+ ED VA +SDFG+ K  S     S Q      
Sbjct: 126 VCEAMEYLEGNN---FVHRDLAARNVLVSEDNVAKVSDFGLTKEAS-----STQDTGKLP 177
Query: 739 IGYMAPEYGTKGRVSTRGDVCSFGII 764
           + + APE   + + ST+ DV SFGI+
Sbjct: 178 VKWTAPEALREKKFSTKSDVWSFGIL 203

>pdb|3IGO|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cdpk1, Cgd3_920 Length = 486

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 51/106 (48%), Gaps = 7/106 (6%)
Query: 662 DECEVRKRIRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLL---DEDMVAHISDFG 718
           DE   RKR    +  +II      + + H   I+H DLKP N+LL   ++D    I DFG
Sbjct: 110 DEIIKRKRFSEHDAARIIKQVFSGITYMHKHNIVHRDLKPENILLESKEKDCDIKIIDFG 169
Query: 719 IAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
           ++       Q +K    + T  Y+APE   +G    + DV S G+I
Sbjct: 170 LSTCFQ---QNTKMKDRIGTAYYIAPEV-LRGTYDEKCDVWSAGVI 211

>pdb|1K9A|A Chain A, Crystal Structure Analysis Of Full-Length Carboxyl-Terminal Src Kinase At 2.5 A Resolution Length = 450

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 46/86 (53%), Gaps = 8/86 (9%)
Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLAT 738
           +  ++EYL   +    +H DL   NVL+ ED VA +SDFG+ K  S     S Q      
Sbjct: 298 VCEAMEYLEGNN---FVHRDLAARNVLVSEDNVAKVSDFGLTKEAS-----STQDTGKLP 349
Query: 739 IGYMAPEYGTKGRVSTRGDVCSFGII 764
           + + APE   + + ST+ DV SFGI+
Sbjct: 350 VKWTAPEALREKKFSTKSDVWSFGIL 375

>pdb|3COM|A Chain A, Crystal Structure Of Mst1 Kinase Length = 314

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 58/102 (56%), Gaps = 7/102 (6%)
Query: 669 RIRHRNLVK-----IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLL 723
           R+R++ L +     I+ S+L+ L + H +  IH D+K  N+LL+ +  A ++DFG+A  L
Sbjct: 116 RLRNKTLTEDEIATILQSTLKGLEYLHFMRKIHRDIKAGNILLNTEGHAKLADFGVAGQL 175
Query: 724 SGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIIS 765
           +  D ++K+   + T  +MAPE   +   +   D+ S GI +
Sbjct: 176 T--DXMAKRNXVIGTPFWMAPEVIQEIGYNCVADIWSLGITA 215

>pdb|3D7U|A Chain A, Structural Basis For The Recognition Of C-Src By Its Inactivator Csk Length = 263

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/86 (37%), Positives = 46/86 (53%), Gaps = 8/86 (9%)
Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLAT 738
           +  ++EYL   +    +H DL   NVL+ ED VA +SDFG+ K  S     S Q      
Sbjct: 111 VCEAMEYLEGNN---FVHRDLAARNVLVSEDNVAKVSDFGLTKEAS-----STQDTGKLP 162
Query: 739 IGYMAPEYGTKGRVSTRGDVCSFGII 764
           + + APE   + + ST+ DV SFGI+
Sbjct: 163 VKWTAPEALREKKFSTKSDVWSFGIL 188

>pdb|3TT0|A Chain A, Co-Structure Of Fibroblast Growth Factor Receptor 1 Kinase Domain With 3-(2,6-Dichloro-3, 5-Dimethoxy-Phenyl)-1-{6-[4-(4-Ethyl-Piperazin-1- Yl)-Phenylamino]-Pyrimidin-4-Yl}-1-Methyl-Urea (Bgj398) Length = 382

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 45/86 (52%), Gaps = 3/86 (3%)
Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLAT 738
           ++  +EYL    S   IH DL   NVL+ ED V  I+DFG+A+ +   D   K T     
Sbjct: 200 VARGMEYLA---SKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLP 256
Query: 739 IGYMAPEYGTKGRVSTRGDVCSFGII 764
           + +MAPE       + + DV SFG++
Sbjct: 257 VKWMAPEALFDRIYTHQSDVWSFGVL 282

>pdb|3C4F|A Chain A, Fgfr Tyrosine Kinase Domain In Complex With 3-(3- Methoxybenzyl)-7-Azaindole Length = 302

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 45/86 (52%), Gaps = 3/86 (3%)
Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLAT 738
           ++  +EYL    S   IH DL   NVL+ ED V  I+DFG+A+ +   D   K T     
Sbjct: 144 VARGMEYLA---SKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLP 200
Query: 739 IGYMAPEYGTKGRVSTRGDVCSFGII 764
           + +MAPE       + + DV SFG++
Sbjct: 201 VKWMAPEALFDRIYTHQSDVWSFGVL 226

>pdb|3GQI|A Chain A, Crystal Structure Of Activated Receptor Tyrosine Kinase In Complex With Substrates Length = 326

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 45/86 (52%), Gaps = 3/86 (3%)
Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLAT 738
           ++  +EYL    S   IH DL   NVL+ ED V  I+DFG+A+ +   D   K T     
Sbjct: 159 VARGMEYLA---SKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDXXKKTTNGRLP 215
Query: 739 IGYMAPEYGTKGRVSTRGDVCSFGII 764
           + +MAPE       + + DV SFG++
Sbjct: 216 VKWMAPEALFDRIYTHQSDVWSFGVL 241

>pdb|4F63|A Chain A, Crystal Structure Of Human Fibroblast Growth Factor Receptor 1 Kinase Domain In Complex With Compound 1 Length = 309

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 45/86 (52%), Gaps = 3/86 (3%)
Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLAT 738
           ++  +EYL    S   IH DL   NVL+ ED V  I+DFG+A+ +   D   K T     
Sbjct: 151 VARGMEYLA---SKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLP 207
Query: 739 IGYMAPEYGTKGRVSTRGDVCSFGII 764
           + +MAPE       + + DV SFG++
Sbjct: 208 VKWMAPEALFDRIYTHQSDVWSFGVL 233

>pdb|2WEI|A Chain A, Crystal Structure Of The Kinase Domain Of Cryptosporidium Parvum Calcium Dependent Protein Kinase In Complex With 3- Mb-Pp1 Length = 287

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 51/106 (48%), Gaps = 7/106 (6%)
Query: 662 DECEVRKRIRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLL---DEDMVAHISDFG 718
           DE   RKR    +  +II      + + H   I+H DLKP N+LL   ++D    I DFG
Sbjct: 110 DEIIKRKRFSEHDAARIIKQVFSGITYMHKHNIVHRDLKPENILLESKEKDCDIKIIDFG 169
Query: 719 IAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
           ++       Q +K    + T  Y+APE   +G    + DV S G+I
Sbjct: 170 LSTCFQ---QNTKMKDRIGTAYYIAPEV-LRGTYDEKCDVWSAGVI 211

>pdb|3RHX|B Chain B, Crystal Structure Of The Catalytic Domain Of Fgfr1 Kinase In Complex With Arq 069 Length = 306

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 45/86 (52%), Gaps = 3/86 (3%)
Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLAT 738
           ++  +EYL    S   IH DL   NVL+ ED V  I+DFG+A+ +   D   K T     
Sbjct: 148 VARGMEYLA---SKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLP 204
Query: 739 IGYMAPEYGTKGRVSTRGDVCSFGII 764
           + +MAPE       + + DV SFG++
Sbjct: 205 VKWMAPEALFDRIYTHQSDVWSFGVL 230

>pdb|1FGK|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of Fibroblast Growth Factor Receptor 1 Length = 310

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 45/86 (52%), Gaps = 3/86 (3%)
Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLAT 738
           ++  +EYL    S   IH DL   NVL+ ED V  I+DFG+A+ +   D   K T     
Sbjct: 152 VARGMEYLA---SKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLP 208
Query: 739 IGYMAPEYGTKGRVSTRGDVCSFGII 764
           + +MAPE       + + DV SFG++
Sbjct: 209 VKWMAPEALFDRIYTHQSDVWSFGVL 234

>pdb|3JS2|A Chain A, Crystal Structure Of Minimal Kinase Domain Of Fibroblast Growth Factor Receptor 1 In Complex With 5-(2-Thienyl) Nicotinic Acid Length = 317

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 45/86 (52%), Gaps = 3/86 (3%)
Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLAT 738
           ++  +EYL    S   IH DL   NVL+ ED V  I+DFG+A+ +   D   K T     
Sbjct: 159 VARGMEYLA---SKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLP 215
Query: 739 IGYMAPEYGTKGRVSTRGDVCSFGII 764
           + +MAPE       + + DV SFG++
Sbjct: 216 VKWMAPEALFDRIYTHQSDVWSFGVL 241

>pdb|4GT4|A Chain A, Structure Of Unliganded, Inactive Ror2 Kinase Domain Length = 308

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 48/91 (52%), Gaps = 3/91 (3%)
Query: 674 NLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQT 733
           +LV  I++ +EYL   H   ++H DL   NVL+ + +   ISD G+ + +   D      
Sbjct: 149 HLVAQIAAGMEYLSSHH---VVHKDLATRNVLVYDKLNVKISDLGLFREVYAADYYKLLG 205
Query: 734 QTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
            +L  I +MAPE    G+ S   D+ S+G++
Sbjct: 206 NSLLPIRWMAPEAIMYGKFSIDSDIWSYGVV 236

>pdb|3KXX|A Chain A, Structure Of The Mutant Fibroblast Growth Factor Receptor 1 Length = 317

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 45/86 (52%), Gaps = 3/86 (3%)
Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLAT 738
           ++  +EYL    S   IH DL   NVL+ ED V  I+DFG+A+ +   D   K T     
Sbjct: 159 VARGMEYLA---SKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLP 215
Query: 739 IGYMAPEYGTKGRVSTRGDVCSFGII 764
           + +MAPE       + + DV SFG++
Sbjct: 216 VKWMAPEALFDRIYTHQSDVWSFGVL 241

>pdb|3GQL|A Chain A, Crystal Structure Of Activated Receptor Tyrosine Kinase In Complex With Substrates Length = 326

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 45/86 (52%), Gaps = 3/86 (3%)
Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLAT 738
           ++  +EYL    S   IH DL   NVL+ ED V  I+DFG+A+ +   D   K T     
Sbjct: 159 VARGMEYLA---SKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLP 215
Query: 739 IGYMAPEYGTKGRVSTRGDVCSFGII 764
           + +MAPE       + + DV SFG++
Sbjct: 216 VKWMAPEALFDRIYTHQSDVWSFGVL 241

>pdb|3DK3|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex With Small Molecule Fragment Length = 293

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 48/86 (55%), Gaps = 4/86 (4%)
Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLAT 738
           ISS++EYL   +    IH DL   N L+ E+ +  ++DFG+++L++G D  +        
Sbjct: 118 ISSAMEYLEKKN---FIHRDLAARNCLVGENHLVKVADFGLSRLMTG-DTFTAHAGAKFP 173
Query: 739 IGYMAPEYGTKGRVSTRGDVCSFGII 764
           I + APE     + S + DV +FG++
Sbjct: 174 IKWTAPESLAYNKFSIKSDVWAFGVL 199

>pdb|3DFA|A Chain A, Crystal Structure Of Kinase Domain Of Calcium-dependent Protein Kinase Cgd3_920 From Cryptosporidium Parvum Length = 286

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 51/106 (48%), Gaps = 7/106 (6%)
Query: 662 DECEVRKRIRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLL---DEDMVAHISDFG 718
           DE   RKR    +  +II      + + H   I+H DLKP N+LL   ++D    I DFG
Sbjct: 110 DEIIKRKRFSEHDAARIIKQVFSGITYMHKHNIVHRDLKPENILLESKEKDCDIKIIDFG 169
Query: 719 IAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
           ++       Q +K    + T  Y+APE   +G    + DV S G+I
Sbjct: 170 LSTCFQ---QNTKMKDRIGTAYYIAPEV-LRGTYDEKCDVWSAGVI 211

>pdb|3ZZW|A Chain A, Crystal Structure Of The Kinase Domain Of Ror2 Length = 289

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 48/91 (52%), Gaps = 3/91 (3%)
Query: 674 NLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQT 733
           +LV  I++ +EYL   H   ++H DL   NVL+ + +   ISD G+ + +   D      
Sbjct: 132 HLVAQIAAGMEYLSSHH---VVHKDLATRNVLVYDKLNVKISDLGLFREVYAADYYKLLG 188
Query: 734 QTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
            +L  I +MAPE    G+ S   D+ S+G++
Sbjct: 189 NSLLPIRWMAPEAIMYGKFSIDSDIWSYGVV 219

>pdb|3QRJ|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain T315i Mutant In Complex With Dcc-2036 Length = 277

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 48/86 (55%), Gaps = 4/86 (4%)
Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLAT 738
           ISS++EYL   +    IH DL   N L+ E+ +  ++DFG+++L++G D  +        
Sbjct: 125 ISSAMEYLEKKN---FIHRDLAARNCLVGENHLVKVADFGLSRLMTG-DTYTAHAGAKFP 180
Query: 739 IGYMAPEYGTKGRVSTRGDVCSFGII 764
           I + APE     + S + DV +FG++
Sbjct: 181 IKWTAPESLAYNKFSIKSDVWAFGVL 206

>pdb|3QRI|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain In Complex With Dcc- 2036 Length = 277

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 48/86 (55%), Gaps = 4/86 (4%)
Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLAT 738
           ISS++EYL   +    IH DL   N L+ E+ +  ++DFG+++L++G D  +        
Sbjct: 125 ISSAMEYLEKKN---FIHRDLAARNCLVGENHLVKVADFGLSRLMTG-DTYTAHAGAKFP 180
Query: 739 IGYMAPEYGTKGRVSTRGDVCSFGII 764
           I + APE     + S + DV +FG++
Sbjct: 181 IKWTAPESLAYNKFSIKSDVWAFGVL 206

>pdb|3D7T|A Chain A, Structural Basis For The Recognition Of C-Src By Its Inactivator Csk Length = 269

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/86 (37%), Positives = 45/86 (52%), Gaps = 8/86 (9%)
Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLAT 738
           +  ++EYL   +    +H DL   NVL+ ED VA +SDFG+ K  S     S Q      
Sbjct: 117 VCEAMEYLEGNN---FVHRDLAARNVLVSEDNVAKVSDFGLTKEAS-----STQDTGKLP 168
Query: 739 IGYMAPEYGTKGRVSTRGDVCSFGII 764
           + + APE   +   ST+ DV SFGI+
Sbjct: 169 VKWTAPEALREAAFSTKSDVWSFGIL 194

>pdb|2JC6|A Chain A, Crystal Structure Of Human Calmodulin-Dependent Protein Kinase 1d Length = 334

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/91 (35%), Positives = 49/91 (53%), Gaps = 6/91 (6%)
Query: 678 IISSSLEYLHFGHSIPIIHCDLKPSNVLL---DEDMVAHISDFGIAKLLSGEDQLSKQTQ 734
           +I   L+ +++ H + I+H DLKP N+L    DE+    ISDFG++K+    D +S    
Sbjct: 125 LIRQVLDAVYYLHRMGIVHRDLKPENLLYYSQDEESKIMISDFGLSKMEGKGDVMS---T 181
Query: 735 TLATIGYMAPEYGTKGRVSTRGDVCSFGIIS 765
              T GY+APE   +   S   D  S G+I+
Sbjct: 182 ACGTPGYVAPEVLAQKPYSKAVDCWSIGVIA 212

>pdb|2HZI|A Chain A, Abl Kinase Domain In Complex With Pd180970 Length = 277

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 48/86 (55%), Gaps = 4/86 (4%)
Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLAT 738
           ISS++EYL   +    IH DL   N L+ E+ +  ++DFG+++L++G D  +        
Sbjct: 124 ISSAMEYLEKKN---FIHRDLAARNCLVGENHLVKVADFGLSRLMTG-DTYTAHAGAKFP 179
Query: 739 IGYMAPEYGTKGRVSTRGDVCSFGII 764
           I + APE     + S + DV +FG++
Sbjct: 180 IKWTAPESLAYNKFSIKSDVWAFGVL 205

>pdb|3PYY|A Chain A, Discovery And Characterization Of A Cell-Permeable, Small-Molecule C- Abl Kinase Activator That Binds To The Myristoyl Binding Site Length = 298

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 48/86 (55%), Gaps = 4/86 (4%)
Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLAT 738
           ISS++EYL   +    IH DL   N L+ E+ +  ++DFG+++L++G D  +        
Sbjct: 133 ISSAMEYLEKKN---FIHRDLAARNCLVGENHLVKVADFGLSRLMTG-DTYTAHAGAKFP 188
Query: 739 IGYMAPEYGTKGRVSTRGDVCSFGII 764
           I + APE     + S + DV +FG++
Sbjct: 189 IKWTAPESLAYNKFSIKSDVWAFGVL 214

>pdb|3OXZ|A Chain A, Crystal Structure Of Abl Kinase Domain Bound With A Dfg-Out Inhibitor Ap24534 Length = 284

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 48/86 (55%), Gaps = 4/86 (4%)
Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLAT 738
           ISS++EYL   +    IH DL   N L+ E+ +  ++DFG+++L++G D  +        
Sbjct: 120 ISSAMEYLEKKN---FIHRDLAARNCLVGENHLVKVADFGLSRLMTG-DTYTAHAGAKFP 175
Query: 739 IGYMAPEYGTKGRVSTRGDVCSFGII 764
           I + APE     + S + DV +FG++
Sbjct: 176 IKWTAPESLAYNKFSIKSDVWAFGVL 201

>pdb|2E2B|A Chain A, Crystal Structure Of The C-Abl Kinase Domain In Complex With Inno-406 Length = 293

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 48/86 (55%), Gaps = 4/86 (4%)
Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLAT 738
           ISS++EYL   +    IH DL   N L+ E+ +  ++DFG+++L++G D  +        
Sbjct: 125 ISSAMEYLEKKN---FIHRDLAARNCLVGENHLVKVADFGLSRLMTG-DTYTAHAGAKFP 180
Query: 739 IGYMAPEYGTKGRVSTRGDVCSFGII 764
           I + APE     + S + DV +FG++
Sbjct: 181 IKWTAPESLAYNKFSIKSDVWAFGVL 206

>pdb|2Z60|A Chain A, Crystal Structure Of The T315i Mutant Of Abl Kinase Bound With Ppy-A Length = 288

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 48/86 (55%), Gaps = 4/86 (4%)
Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLAT 738
           ISS++EYL   +    IH DL   N L+ E+ +  ++DFG+++L++G D  +        
Sbjct: 120 ISSAMEYLEKKN---FIHRDLAARNCLVGENHLVKVADFGLSRLMTG-DTYTAHAGAKFP 175
Query: 739 IGYMAPEYGTKGRVSTRGDVCSFGII 764
           I + APE     + S + DV +FG++
Sbjct: 176 IKWTAPESLAYNKFSIKSDVWAFGVL 201

>pdb|2QOH|A Chain A, Crystal Structure Of Abl Kinase Bound With Ppy-a Length = 288

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 48/86 (55%), Gaps = 4/86 (4%)
Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLAT 738
           ISS++EYL   +    IH DL   N L+ E+ +  ++DFG+++L++G D  +        
Sbjct: 120 ISSAMEYLEKKN---FIHRDLAARNCLVGENHLVKVADFGLSRLMTG-DTYTAHAGAKFP 175
Query: 739 IGYMAPEYGTKGRVSTRGDVCSFGII 764
           I + APE     + S + DV +FG++
Sbjct: 176 IKWTAPESLAYNKFSIKSDVWAFGVL 201

>pdb|1FPU|A Chain A, Crystal Structure Of Abl Kinase Domain In Complex With A Small Molecule Inhibitor Length = 293

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 48/86 (55%), Gaps = 4/86 (4%)
Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLAT 738
           ISS++EYL   +    IH DL   N L+ E+ +  ++DFG+++L++G D  +        
Sbjct: 125 ISSAMEYLEKKN---FIHRDLAARNCLVGENHLVKVADFGLSRLMTG-DTYTAHAGAKFP 180
Query: 739 IGYMAPEYGTKGRVSTRGDVCSFGII 764
           I + APE     + S + DV +FG++
Sbjct: 181 IKWTAPESLAYNKFSIKSDVWAFGVL 206

>pdb|2HIW|A Chain A, Crystal Structure Of Inactive Conformation Abl Kinase Catalytic Domain Complexed With Type Ii Inhibitor Length = 287

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 48/86 (55%), Gaps = 4/86 (4%)
Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLAT 738
           ISS++EYL   +    IH DL   N L+ E+ +  ++DFG+++L++G D  +        
Sbjct: 122 ISSAMEYLEKKN---FIHRDLAARNCLVGENHLVKVADFGLSRLMTG-DTYTAHAGAKFP 177
Query: 739 IGYMAPEYGTKGRVSTRGDVCSFGII 764
           I + APE     + S + DV +FG++
Sbjct: 178 IKWTAPESLAYNKFSIKSDVWAFGVL 203

>pdb|2G1T|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine Kinase Domain Length = 287

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 48/86 (55%), Gaps = 4/86 (4%)
Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLAT 738
           ISS++EYL   +    IH DL   N L+ E+ +  ++DFG+++L++G D  +        
Sbjct: 122 ISSAMEYLEKKN---FIHRDLAARNCLVGENHLVKVADFGLSRLMTG-DTYTAHAGAKFP 177
Query: 739 IGYMAPEYGTKGRVSTRGDVCSFGII 764
           I + APE     + S + DV +FG++
Sbjct: 178 IKWTAPESLAYNKFSIKSDVWAFGVL 203

>pdb|2GQG|A Chain A, X-Ray Crystal Structure Of Dasatinib (Bms-354825) Bound To Activated Abl Kinase Domain Length = 278

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 48/86 (55%), Gaps = 4/86 (4%)
Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLAT 738
           ISS++EYL   +    IH DL   N L+ E+ +  ++DFG+++L++G D  +        
Sbjct: 125 ISSAMEYLEKKN---FIHRDLAARNCLVGENHLVKVADFGLSRLMTG-DTXTAHAGAKFP 180
Query: 739 IGYMAPEYGTKGRVSTRGDVCSFGII 764
           I + APE     + S + DV +FG++
Sbjct: 181 IKWTAPESLAYNKFSIKSDVWAFGVL 206

>pdb|3OY3|A Chain A, Crystal Structure Of Abl T315i Mutant Kinase Domain Bound With A Dfg- Out Inhibitor Ap24589 Length = 284

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 48/86 (55%), Gaps = 4/86 (4%)
Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLAT 738
           ISS++EYL   +    IH DL   N L+ E+ +  ++DFG+++L++G D  +        
Sbjct: 120 ISSAMEYLEKKN---FIHRDLAARNCLVGENHLVKVADFGLSRLMTG-DTYTAHAGAKFP 175
Query: 739 IGYMAPEYGTKGRVSTRGDVCSFGII 764
           I + APE     + S + DV +FG++
Sbjct: 176 IKWTAPESLAYNKFSIKSDVWAFGVL 201

>pdb|2V7A|A Chain A, Crystal Structure Of The T315i Abl Mutant In Complex With The Inhibitor Pha-739358 Length = 286

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 48/86 (55%), Gaps = 4/86 (4%)
Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLAT 738
           ISS++EYL   +    IH DL   N L+ E+ +  ++DFG+++L++G D  +        
Sbjct: 121 ISSAMEYLEKKN---FIHRDLAARNCLVGENHLVKVADFGLSRLMTG-DTXTAHAGAKFP 176
Query: 739 IGYMAPEYGTKGRVSTRGDVCSFGII 764
           I + APE     + S + DV +FG++
Sbjct: 177 IKWTAPESLAYNKFSIKSDVWAFGVL 202

>pdb|3DK6|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex With Small Molecule Fragment Length = 293

Iteration: 1
 Score = 51.2 bits (121), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 48/86 (55%), Gaps = 4/86 (4%)
Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLAT 738
           ISS++EYL   +    IH DL   N L+ E+ +  ++DFG+++L++G D  +        
Sbjct: 118 ISSAMEYLEKKN---FIHRDLAARNCLVGENHLVKVADFGLSRLMTG-DTXTAHAGAKFP 173
Query: 739 IGYMAPEYGTKGRVSTRGDVCSFGII 764
           I + APE     + S + DV +FG++
Sbjct: 174 IKWTAPESLAYNKFSIKSDVWAFGVL 199

>pdb|3C4C|A Chain A, B-Raf Kinase In Complex With Plx4720 Length = 280

Iteration: 1
 Score = 51.2 bits (121), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/111 (32%), Positives = 57/111 (51%), Gaps = 9/111 (8%)
Query: 657 LKSFEDECEVRKRIRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISD 716
           L + E + E++K I   ++ +  +  ++YLH   +  IIH DLK +N+ L ED    I D
Sbjct: 98  LHASETKFEMKKLI---DIARQTARGMDYLH---AKSIIHRDLKSNNIFLHEDNTVKIGD 151
Query: 717 FGIAKLLSGEDQLSKQTQTLATIGYMAPE---YGTKGRVSTRGDVCSFGII 764
           FG+A + S      +  Q   +I +MAPE          S + DV +FGI+
Sbjct: 152 FGLATVKSRWSGSHQFEQLSGSILWMAPEVIRMQDSNPYSFQSDVYAFGIV 202

>pdb|4E6D|A Chain A, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With Compound 7 Length = 298

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 69/168 (41%), Gaps = 44/168 (26%)
Query: 641 GMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVKI-----------ISSSLEYLHFG 689
           G  VAVK      E  L+ FE E E+ K ++H N+VK            +   +E+L +G
Sbjct: 42  GEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEFLPYG 101
Query: 690 --------HSIPI------------------------IHCDLKPSNVLLDEDMVAHISDF 717
                   H   I                        IH DL   N+L++ +    I DF
Sbjct: 102 SLREYLQKHKERIDHIKLLQYTSQICKGMEYLGTKRYIHRDLATRNILVENENRVKIGDF 161
Query: 718 GIAKLLSGEDQLSKQTQT-LATIGYMAPEYGTKGRVSTRGDVCSFGII 764
           G+ K+L  + +  K  +   + I + APE  T+ + S   DV SFG++
Sbjct: 162 GLTKVLPQDKEXXKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVV 209

>pdb|3Q4Z|A Chain A, Structure Of Unphosphorylated Pak1 Kinase Domain Length = 306

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 2/92 (2%)
Query: 674 NLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQT 733
            +  +    L+ L F HS  +IH ++K  N+LL  D    ++DFG    ++ E   SK++
Sbjct: 118 QIAAVCRECLQALEFLHSNQVIHRNIKSDNILLGMDGSVKLTDFGFCAQITPEQ--SKRS 175
Query: 734 QTLATIGYMAPEYGTKGRVSTRGDVCSFGIIS 765
             + T  +MAPE  T+     + D+ S GI++
Sbjct: 176 TMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMA 207

>pdb|3DK7|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex With Small Molecule Fragment Length = 277

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 48/86 (55%), Gaps = 4/86 (4%)
Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLAT 738
           ISS++EYL   +    IH DL   N L+ E+ +  ++DFG+++L++G D  +        
Sbjct: 118 ISSAMEYLEKKN---FIHRDLAARNCLVGENHLVKVADFGLSRLMTG-DTXTAHAGAKFP 173
Query: 739 IGYMAPEYGTKGRVSTRGDVCSFGII 764
           I + APE     + S + DV +FG++
Sbjct: 174 IKWTAPESLAYNKFSIKSDVWAFGVL 199

>pdb|3QGW|A Chain A, Crystal Structure Of Itk Kinase Bound To An Inhibitor Length = 286

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 694 IIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVS 753
           +IH DL   N L+ E+ V  +SDFG+ + +  +DQ +  T T   + + +PE  +  R S
Sbjct: 144 VIHRDLAARNCLVGENQVIKVSDFGMTRFVL-DDQYTSSTGTKFPVKWASPEVFSFSRYS 202
Query: 754 TRGDVCSFGII 764
           ++ DV SFG++
Sbjct: 203 SKSDVWSFGVL 213

>pdb|1SM2|A Chain A, Crystal Structure Of The Phosphorylated Interleukin-2 Tyrosine Kinase Catalytic Domain Length = 264

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 694 IIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVS 753
           +IH DL   N L+ E+ V  +SDFG+ + +  +DQ +  T T   + + +PE  +  R S
Sbjct: 122 VIHRDLAARNCLVGENQVIKVSDFGMTRFVL-DDQYTSSTGTKFPVKWASPEVFSFSRYS 180
Query: 754 TRGDVCSFGII 764
           ++ DV SFG++
Sbjct: 181 SKSDVWSFGVL 191

>pdb|4HCT|A Chain A, Crystal Structure Of Itk In Complex With Compound 52 Length = 269

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 694 IIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVS 753
           +IH DL   N L+ E+ V  +SDFG+ + +  +DQ +  T T   + + +PE  +  R S
Sbjct: 127 VIHRDLAARNCLVGENQVIKVSDFGMTRFVL-DDQYTSSTGTKFPVKWASPEVFSFSRYS 185
Query: 754 TRGDVCSFGII 764
           ++ DV SFG++
Sbjct: 186 SKSDVWSFGVL 196

>pdb|3V5J|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase Itk Catalytic Domain With Thienopyrazolylindole Inhibitor 090 Length = 266

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 694 IIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVS 753
           +IH DL   N L+ E+ V  +SDFG+ + +  +DQ +  T T   + + +PE  +  R S
Sbjct: 124 VIHRDLAARNCLVGENQVIKVSDFGMTRFVL-DDQYTSSTGTKFPVKWASPEVFSFSRYS 182
Query: 754 TRGDVCSFGII 764
           ++ DV SFG++
Sbjct: 183 SKSDVWSFGVL 193

>pdb|3T9T|A Chain A, Crystal Structure Of Btk Mutant (F435t,K596r) Complexed With Imidazo[1,5-A]quinoxaline Length = 267

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 694 IIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVS 753
           +IH DL   N L+ E+ V  +SDFG+ + +  +DQ +  T T   + + +PE  +  R S
Sbjct: 125 VIHRDLAARNCLVGENQVIKVSDFGMTRFVL-DDQYTSSTGTKFPVKWASPEVFSFSRYS 183
Query: 754 TRGDVCSFGII 764
           ++ DV SFG++
Sbjct: 184 SKSDVWSFGVL 194

>pdb|3MIY|A Chain A, X-Ray Crystal Structure Of Itk Complexed With Sunitinib Length = 266

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 694 IIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVS 753
           +IH DL   N L+ E+ V  +SDFG+ + +  +DQ +  T T   + + +PE  +  R S
Sbjct: 124 VIHRDLAARNCLVGENQVIKVSDFGMTRFVL-DDQYTSSTGTKFPVKWASPEVFSFSRYS 182
Query: 754 TRGDVCSFGII 764
           ++ DV SFG++
Sbjct: 183 SKSDVWSFGVL 193

>pdb|3G33|A Chain A, Crystal Structure Of Cdk4CYCLIN D3 Length = 308

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 71/149 (47%), Gaps = 11/149 (7%)
Query: 623 LLRATDRFSENNLIGIGN-------GMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNL 675
           LLR  + F   N++ + +         E+ V +  +  ++ L+++ D+      +    +
Sbjct: 64  LLRRLEAFEHPNVVRLMDVCATSRTDREIKVTLVFEHVDQDLRTYLDKAPP-PGLPAETI 122
Query: 676 VKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQT 735
             ++   L  L F H+  I+H DLKP N+L+       ++DFG+A++ S +  L   T  
Sbjct: 123 KDLMRQFLRGLDFLHANCIVHRDLKPENILVTSGGTVKLADFGLARIYSYQMAL---TPV 179
Query: 736 LATIGYMAPEYGTKGRVSTRGDVCSFGII 764
           + T+ Y APE   +   +T  D+ S G I
Sbjct: 180 VVTLWYRAPEVLLQSTYATPVDMWSVGCI 208

>pdb|3GVU|A Chain A, The Crystal Structure Of Human Abl2 In Complex With Gleevec Length = 292

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 47/86 (54%), Gaps = 4/86 (4%)
Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLAT 738
           ISS++EYL   +    IH DL   N L+ E+ V  ++DFG+++L++G D  +        
Sbjct: 139 ISSAMEYLEKKN---FIHRDLAARNCLVGENHVVKVADFGLSRLMTG-DTYTAHAGAKFP 194
Query: 739 IGYMAPEYGTKGRVSTRGDVCSFGII 764
           I + APE       S + DV +FG++
Sbjct: 195 IKWTAPESLAYNTFSIKSDVWAFGVL 220

>pdb|4BBE|A Chain A, Aminoalkylpyrimidine Inhibitor Complexes With Jak2 Length = 298

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 69/168 (41%), Gaps = 44/168 (26%)
Query: 641 GMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVKI-----------ISSSLEYLHFG 689
           G  VAVK      E  L+ FE E E+ K ++H N+VK            +   +EYL +G
Sbjct: 40  GEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYG 99
Query: 690 --------HSIPI------------------------IHCDLKPSNVLLDEDMVAHISDF 717
                   H   I                        IH +L   N+L++ +    I DF
Sbjct: 100 SLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGTKRYIHRNLATRNILVENENRVKIGDF 159
Query: 718 GIAKLLSGEDQLSKQTQT-LATIGYMAPEYGTKGRVSTRGDVCSFGII 764
           G+ K+L  + +  K  +   + I + APE  T+ + S   DV SFG++
Sbjct: 160 GLTKVLPQDKEYYKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVV 207

>pdb|3GGF|A Chain A, Crystal Structure Of Human SerineTHREONINE-Protein Kinase Mst4 In Complex With An Quinazolin Length = 301

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/91 (35%), Positives = 49/91 (53%), Gaps = 5/91 (5%)
Query: 675 LVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQ 734
           ++K I   L+YLH   S   IH D+K +NVLL E     ++DFG+A  L+  D   K+  
Sbjct: 125 MLKEILKGLDYLH---SEKKIHRDIKAANVLLSEQGDVKLADFGVAGQLT--DTQIKRNT 179
Query: 735 TLATIGYMAPEYGTKGRVSTRGDVCSFGIIS 765
            + T  +MAPE   +    ++ D+ S GI +
Sbjct: 180 FVGTPFWMAPEVIQQSAYDSKADIWSLGITA 210

>pdb|4B99|A Chain A, Crystal Structure Of Mapk7 (Erk5) With Inhibitor Length = 398

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/139 (30%), Positives = 66/139 (47%), Gaps = 9/139 (6%)
Query: 686 LHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLL--SGEDQLSKQTQTLATIGYMA 743
           L + HS  +IH DLKPSN+L++E+    I DFG+A+ L  S  +     T+ +AT  Y A
Sbjct: 171 LKYMHSAQVIHRDLKPSNLLVNENCELKIGDFGMARGLCTSPAEHQYFMTEYVATRWYRA 230
Query: 744 PEYGTKGRVSTRG-DVCSFGIISGGKETRSMTVGETCTPVRESKYEVHPATTTIMEHPLP 802
           PE        T+  D+ S G I G      M       P +   +++      ++  P P
Sbjct: 231 PELMLSLHEYTQAIDLWSVGCIFG-----EMLARRQLFPGKNYVHQLQ-LIMMVLGTPSP 284
Query: 803 RVGEVMDVDRGKARIQGKP 821
            V + +  +R +A IQ  P
Sbjct: 285 AVIQAVGAERVRAYIQSLP 303

>pdb|2PZR|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain Harboring The Pathogenic K641r Mutation Responsible For Pfeiffer Syndrome Length = 324

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/123 (30%), Positives = 57/123 (46%), Gaps = 9/123 (7%)
Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLAT 738
           ++  +EYL    S   IH DL   NVL+ E+ V  I+DFG+A+ ++  D   K T     
Sbjct: 166 LARGMEYLA---SQKCIHRDLAARNVLVTENNVMRIADFGLARDINNIDYYKKTTNGRLP 222
Query: 739 IGYMAPEYGTKGRVSTRGDVCSFGIIS------GGKETRSMTVGETCTPVRESKYEVHPA 792
           + +MAPE       + + DV SFG++       GG     + V E    ++E      PA
Sbjct: 223 VKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVEELFKLLKEGHRMDKPA 282
Query: 793 TTT 795
             T
Sbjct: 283 NCT 285

>pdb|4A4X|A Chain A, Nek2-Ede Bound To Cct248662 Length = 279

Iteration: 1
 Score = 50.4 bits (119), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 45/76 (59%), Gaps = 4/76 (5%)
Query: 689 GHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGT 748
           GH++  +H DLKP+NV LD      + DFG+A++L+ ++  +K  + + T  YM+PE   
Sbjct: 134 GHTV--LHRDLKPANVFLDGKQNVKLGDFGLARILNHDEDFAK--EFVGTPYYMSPEQMN 189
Query: 749 KGRVSTRGDVCSFGII 764
           +   + + D+ S G +
Sbjct: 190 RMSYNEKSDIWSLGCL 205

>pdb|2F4J|A Chain A, Structure Of The Kinase Domain Of An Imatinib-Resistant Abl Mutant In Complex With The Aurora Kinase Inhibitor Vx-680 Length = 287

Iteration: 1
 Score = 50.4 bits (119), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 48/86 (55%), Gaps = 4/86 (4%)
Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLAT 738
           ISS++EYL   +    IH DL   N L+ E+ +  ++DFG+++L++G D  +        
Sbjct: 121 ISSAMEYLEKKN---FIHRDLAARNCLVGENHLVKVADFGLSRLMTG-DTYTAPAGAKFP 176
Query: 739 IGYMAPEYGTKGRVSTRGDVCSFGII 764
           I + APE     + S + DV +FG++
Sbjct: 177 IKWTAPESLAYNKFSIKSDVWAFGVL 202

>pdb|2HYY|A Chain A, Human Abl Kinase Domain In Complex With Imatinib (Sti571, Glivec) Length = 273

Iteration: 1
 Score = 50.4 bits (119), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 28/86 (32%), Positives = 48/86 (55%), Gaps = 4/86 (4%)
Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLAT 738
           ISS++EYL   +    IH DL   N L+ E+ +  ++DFG+++L++G D  +        
Sbjct: 120 ISSAMEYLEKKN---FIHRDLAARNCLVGENHLVKVADFGLSRLMTG-DTYTAHAGAKFP 175
Query: 739 IGYMAPEYGTKGRVSTRGDVCSFGII 764
           I + APE     + S + DV +FG++
Sbjct: 176 IKWTAPESLAYNKFSIKSDVWAFGVL 201

>pdb|2HZ0|A Chain A, Abl Kinase Domain In Complex With Nvp-Aeg082 Length = 270

Iteration: 1
 Score = 50.4 bits (119), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 28/86 (32%), Positives = 48/86 (55%), Gaps = 4/86 (4%)
Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLAT 738
           ISS++EYL   +    IH DL   N L+ E+ +  ++DFG+++L++G D  +        
Sbjct: 120 ISSAMEYLEKKN---FIHRDLAARNCLVGENHLVKVADFGLSRLMTG-DTYTAHAGAKFP 175
Query: 739 IGYMAPEYGTKGRVSTRGDVCSFGII 764
           I + APE     + S + DV +FG++
Sbjct: 176 IKWTAPESLAYNKFSIKSDVWAFGVL 201

>pdb|2Q0B|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain Harboring The Pathogenic E565a Mutation Responsible For Pfeiffer Syndrome Length = 324

Iteration: 1
 Score = 50.4 bits (119), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 38/123 (30%), Positives = 57/123 (46%), Gaps = 9/123 (7%)
Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLAT 738
           ++  +EYL    S   IH DL   NVL+ E+ V  I+DFG+A+ ++  D   K T     
Sbjct: 166 LARGMEYLA---SQKCIHRDLAARNVLVTENNVMKIADFGLARDINNIDYYKKTTNGRLP 222
Query: 739 IGYMAPEYGTKGRVSTRGDVCSFGIIS------GGKETRSMTVGETCTPVRESKYEVHPA 792
           + +MAPE       + + DV SFG++       GG     + V E    ++E      PA
Sbjct: 223 VKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVEELFKLLKEGHRMDKPA 282
Query: 793 TTT 795
             T
Sbjct: 283 NCT 285

>pdb|2G2F|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine Kinase Domain Length = 287

Iteration: 1
 Score = 50.4 bits (119), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 48/86 (55%), Gaps = 4/86 (4%)
Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLAT 738
           ISS++EYL   +    IH DL   N L+ E+ +  ++DFG+++L++G D  +        
Sbjct: 122 ISSAMEYLEKKN---FIHRDLAARNCLVGENHLVKVADFGLSRLMTG-DTYTAPAGAKFP 177
Query: 739 IGYMAPEYGTKGRVSTRGDVCSFGII 764
           I + APE     + S + DV +FG++
Sbjct: 178 IKWTAPESLAYNKFSIKSDVWAFGVL 203

>pdb|4F4P|A Chain A, Syk In Complex With Ligand Lasw836 Length = 273

Iteration: 1
 Score = 50.4 bits (119), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 31/101 (30%), Positives = 55/101 (54%), Gaps = 7/101 (6%)
Query: 668 KRIRHRNLVKII---SSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLS 724
           + ++ +N+++++   S  ++YL   +    +H DL   NVLL     A ISDFG++K L 
Sbjct: 100 RHVKDKNIIELVHQVSMGMKYLEESN---FVHRDLAARNVLLVTQHYAKISDFGLSKALR 156
Query: 725 GEDQLSK-QTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
            ++   K QT     + + APE     + S++ DV SFG++
Sbjct: 157 ADENYYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVL 197

>pdb|4DFL|A Chain A, Crystal Structure Of Spleen Tyrosine Kinase Complexed With A Sulfonamidopyrazine Piperidine Inhibitor Length = 274

Iteration: 1
 Score = 50.4 bits (119), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 31/101 (30%), Positives = 55/101 (54%), Gaps = 7/101 (6%)
Query: 668 KRIRHRNLVKII---SSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLS 724
           + ++ +N+++++   S  ++YL   +    +H DL   NVLL     A ISDFG++K L 
Sbjct: 102 RHVKDKNIIELVHQVSMGMKYLEESN---FVHRDLAARNVLLVTQHYAKISDFGLSKALR 158
Query: 725 GEDQLSK-QTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
            ++   K QT     + + APE     + S++ DV SFG++
Sbjct: 159 ADENYYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVL 199

>pdb|3RI1|A Chain A, Crystal Structure Of The Catalytic Domain Of Fgfr2 Kinase In Complex With Arq 069 Length = 313

Iteration: 1
 Score = 50.4 bits (119), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 38/123 (30%), Positives = 57/123 (46%), Gaps = 9/123 (7%)
Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLAT 738
           ++  +EYL    S   IH DL   NVL+ E+ V  I+DFG+A+ ++  D   K T     
Sbjct: 155 LARGMEYLA---SQKCIHRDLAARNVLVTENNVMKIADFGLARDINNIDYYKKTTNGRLP 211
Query: 739 IGYMAPEYGTKGRVSTRGDVCSFGIIS------GGKETRSMTVGETCTPVRESKYEVHPA 792
           + +MAPE       + + DV SFG++       GG     + V E    ++E      PA
Sbjct: 212 VKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVEELFKLLKEGHRMDKPA 271
Query: 793 TTT 795
             T
Sbjct: 272 NCT 274

>pdb|2PSQ|A Chain A, Crystal Structure Of Unphosphorylated Unactivated Wild Type Fgf Receptor 2 (Fgfr2) Kinase Domain Length = 370

Iteration: 1
 Score = 50.4 bits (119), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 46/86 (53%), Gaps = 3/86 (3%)
Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLAT 738
           ++  +EYL    S   IH DL   NVL+ E+ V  I+DFG+A+ ++  D   K T     
Sbjct: 212 LARGMEYLA---SQKCIHRDLAARNVLVTENNVMKIADFGLARDINNIDYYKKTTNGRLP 268
Query: 739 IGYMAPEYGTKGRVSTRGDVCSFGII 764
           + +MAPE       + + DV SFG++
Sbjct: 269 VKWMAPEALFDRVYTHQSDVWSFGVL 294

>pdb|2PY3|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain Harboring The Pathogenic E565g Mutation Responsible For Pfeiffer Syndrome Length = 324

Iteration: 1
 Score = 50.4 bits (119), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 38/123 (30%), Positives = 57/123 (46%), Gaps = 9/123 (7%)
Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLAT 738
           ++  +EYL    S   IH DL   NVL+ E+ V  I+DFG+A+ ++  D   K T     
Sbjct: 166 LARGMEYLA---SQKCIHRDLAARNVLVTENNVMKIADFGLARDINNIDYYKKTTNGRLP 222
Query: 739 IGYMAPEYGTKGRVSTRGDVCSFGIIS------GGKETRSMTVGETCTPVRESKYEVHPA 792
           + +MAPE       + + DV SFG++       GG     + V E    ++E      PA
Sbjct: 223 VKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVEELFKLLKEGHRMDKPA 282
Query: 793 TTT 795
             T
Sbjct: 283 NCT 285

>pdb|1GJO|A Chain A, The Fgfr2 Tyrosine Kinase Domain Length = 316

Iteration: 1
 Score = 50.4 bits (119), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 38/123 (30%), Positives = 57/123 (46%), Gaps = 9/123 (7%)
Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLAT 738
           ++  +EYL    S   IH DL   NVL+ E+ V  I+DFG+A+ ++  D   K T     
Sbjct: 158 LARGMEYLA---SQKCIHRDLAARNVLVTENNVMKIADFGLARDINNIDYYKKTTNGRLP 214
Query: 739 IGYMAPEYGTKGRVSTRGDVCSFGIIS------GGKETRSMTVGETCTPVRESKYEVHPA 792
           + +MAPE       + + DV SFG++       GG     + V E    ++E      PA
Sbjct: 215 VKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVEELFKLLKEGHRMDKPA 274
Query: 793 TTT 795
             T
Sbjct: 275 NCT 277

>pdb|2PVF|A Chain A, Crystal Structure Of Tyrosine Phosphorylated Activated Fgf Receptor 2 (Fgfr2) Kinase Domain In Complex With Atp Analog And Substrate Peptide Length = 334

Iteration: 1
 Score = 50.4 bits (119), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 38/123 (30%), Positives = 57/123 (46%), Gaps = 9/123 (7%)
Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLAT 738
           ++  +EYL    S   IH DL   NVL+ E+ V  I+DFG+A+ ++  D   K T     
Sbjct: 166 LARGMEYLA---SQKCIHRDLAARNVLVTENNVMKIADFGLARDINNIDXXKKTTNGRLP 222
Query: 739 IGYMAPEYGTKGRVSTRGDVCSFGIIS------GGKETRSMTVGETCTPVRESKYEVHPA 792
           + +MAPE       + + DV SFG++       GG     + V E    ++E      PA
Sbjct: 223 VKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVEELFKLLKEGHRMDKPA 282
Query: 793 TTT 795
             T
Sbjct: 283 NCT 285

>pdb|4IC7|A Chain A, Crystal Structure Of The Erk5 Kinase Domain In Complex With An Mkk5 Binding Fragment Length = 442

Iteration: 1
 Score = 50.4 bits (119), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/141 (30%), Positives = 67/141 (47%), Gaps = 9/141 (6%)
Query: 686 LHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLL--SGEDQLSKQTQTLATIGYMA 743
           L + HS  +IH DLKPSN+L++E+    I DFG+A+ L  S  +     T+ +AT  Y A
Sbjct: 172 LKYMHSAQVIHRDLKPSNLLVNENCELKIGDFGMARGLCTSPAEHQYFMTEYVATRWYRA 231
Query: 744 PEYGTKGRVSTRG-DVCSFGIISGGKETRSMTVGETCTPVRESKYEVHPATTTIMEHPLP 802
           PE        T+  D+ S G I G      M       P +   +++      ++  P P
Sbjct: 232 PELMLSLHEYTQAIDLWSVGCIFG-----EMLARRQLFPGKNYVHQLQ-LIMMVLGTPSP 285
Query: 803 RVGEVMDVDRGKARIQGKPIK 823
            V + +  +R +A IQ  P +
Sbjct: 286 AVIQAVGAERVRAYIQSLPPR 306

>pdb|3B2T|A Chain A, Structure Of Phosphotransferase Length = 311

Iteration: 1
 Score = 50.4 bits (119), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 38/123 (30%), Positives = 57/123 (46%), Gaps = 9/123 (7%)
Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLAT 738
           ++  +EYL    S   IH DL   NVL+ E+ V  I+DFG+A+ ++  D   K T     
Sbjct: 153 LARGMEYLA---SQKCIHRDLTARNVLVTENNVMKIADFGLARDINNIDYYKKTTNGRLP 209
Query: 739 IGYMAPEYGTKGRVSTRGDVCSFGIIS------GGKETRSMTVGETCTPVRESKYEVHPA 792
           + +MAPE       + + DV SFG++       GG     + V E    ++E      PA
Sbjct: 210 VKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVEELFKLLKEGHRMDKPA 269
Query: 793 TTT 795
             T
Sbjct: 270 NCT 272

>pdb|3CLY|A Chain A, Crystal Structure Of Fgf Receptor 2 (Fgfr2) Kinase Domains Trapped In Trans-Phosphorylation Reaction Length = 334

Iteration: 1
 Score = 50.1 bits (118), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 38/123 (30%), Positives = 57/123 (46%), Gaps = 9/123 (7%)
Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLAT 738
           ++  +EYL    S   IH DL   NVL+ E+ V  I+DFG+A+ ++  D   K T     
Sbjct: 166 LARGMEYLA---SQKCIHRDLAARNVLVTENNVMKIADFGLARDINNIDXXKKTTNGRLP 222
Query: 739 IGYMAPEYGTKGRVSTRGDVCSFGIIS------GGKETRSMTVGETCTPVRESKYEVHPA 792
           + +MAPE       + + DV SFG++       GG     + V E    ++E      PA
Sbjct: 223 VKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVEELFKLLKEGHRMDKPA 282
Query: 793 TTT 795
             T
Sbjct: 283 NCT 285

>pdb|2PZP|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain Harboring The Pathogenic K526e Mutation Responsible For Crouzon Syndrome Length = 324

Iteration: 1
 Score = 50.1 bits (118), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 38/123 (30%), Positives = 57/123 (46%), Gaps = 9/123 (7%)
Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLAT 738
           ++  +EYL    S   IH DL   NVL+ E+ V  I+DFG+A+ ++  D   K T     
Sbjct: 166 LARGMEYLA---SQKCIHRDLAARNVLVTENNVMKIADFGLARDINNIDYYKKTTNGRLP 222
Query: 739 IGYMAPEYGTKGRVSTRGDVCSFGIIS------GGKETRSMTVGETCTPVRESKYEVHPA 792
           + +MAPE       + + DV SFG++       GG     + V E    ++E      PA
Sbjct: 223 VKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVEELFKLLKEGHRMDKPA 282
Query: 793 TTT 795
             T
Sbjct: 283 NCT 285

>pdb|2PWL|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain Harboring The Pathogenic N549h Mutation Responsible For Crouzon Syndrome. Length = 324

Iteration: 1
 Score = 50.1 bits (118), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 38/123 (30%), Positives = 57/123 (46%), Gaps = 9/123 (7%)
Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLAT 738
           ++  +EYL    S   IH DL   NVL+ E+ V  I+DFG+A+ ++  D   K T     
Sbjct: 166 LARGMEYLA---SQKCIHRDLAARNVLVTENNVMKIADFGLARDINNIDYYKKTTNGRLP 222
Query: 739 IGYMAPEYGTKGRVSTRGDVCSFGIIS------GGKETRSMTVGETCTPVRESKYEVHPA 792
           + +MAPE       + + DV SFG++       GG     + V E    ++E      PA
Sbjct: 223 VKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVEELFKLLKEGHRMDKPA 282
Query: 793 TTT 795
             T
Sbjct: 283 NCT 285

>pdb|2PZ5|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain Harboring The Pathogenic N549t Mutation Responsible For Pfeiffer Syndrome Length = 324

Iteration: 1
 Score = 50.1 bits (118), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 38/123 (30%), Positives = 57/123 (46%), Gaps = 9/123 (7%)
Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLAT 738
           ++  +EYL    S   IH DL   NVL+ E+ V  I+DFG+A+ ++  D   K T     
Sbjct: 166 LARGMEYLA---SQKCIHRDLAARNVLVTENNVMKIADFGLARDINNIDYYKKTTNGRLP 222
Query: 739 IGYMAPEYGTKGRVSTRGDVCSFGIIS------GGKETRSMTVGETCTPVRESKYEVHPA 792
           + +MAPE       + + DV SFG++       GG     + V E    ++E      PA
Sbjct: 223 VKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVEELFKLLKEGHRMDKPA 282
Query: 793 TTT 795
             T
Sbjct: 283 NCT 285

>pdb|3P86|A Chain A, Crystal Structure Of Ctr1 Kinase Domain Mutant D676n In Complex With Staurosporine Length = 309

Iteration: 1
 Score = 50.1 bits (118), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 55/104 (52%), Gaps = 6/104 (5%)
Query: 661 EDECEVRKRIRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIA 720
            ++ + R+R+   ++   ++  + YLH   + PI+H +LK  N+L+D+     + DFG++
Sbjct: 131 REQLDERRRL---SMAYDVAKGMNYLH-NRNPPIVHRNLKSPNLLVDKKYTVKVCDFGLS 186
Query: 721 KLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
           +L +     SK      T  +MAPE       + + DV SFG+I
Sbjct: 187 RLKASTFLSSKSAA--GTPEWMAPEVLRDEPSNEKSDVYSFGVI 228

>pdb|2IVS|A Chain A, Crystal Structure Of Non-Phosphorylated Ret Tyrosine Kinase Domain Length = 314

Iteration: 1
 Score = 50.1 bits (118), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLAT 738
           IS  ++YL     + ++H DL   N+L+ E     ISDFG+++ +  ED   K++Q    
Sbjct: 159 ISQGMQYLA---EMKLVHRDLAARNILVAEGRKMKISDFGLSRDVYEEDSYVKRSQGRIP 215
Query: 739 IGYMAPEYGTKGRVSTRGDVCSFGII 764
           + +MA E       +T+ DV SFG++
Sbjct: 216 VKWMAIESLFDHIYTTQSDVWSFGVL 241

>pdb|3CKX|A Chain A, Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3, Stk24) In Complex With Staurosporine Length = 304

Iteration: 1
 Score = 50.1 bits (118), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 48/92 (52%), Gaps = 2/92 (2%)
Query: 674 NLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQT 733
            +  I+   L+ L + HS   IH D+K +NVLL E     ++DFG+A  L+  D   K+ 
Sbjct: 105 QIATILREILKGLDYLHSEKKIHRDIKAANVLLSEHGEVKLADFGVAGQLT--DTQIKRN 162
Query: 734 QTLATIGYMAPEYGTKGRVSTRGDVCSFGIIS 765
             + T  +MAPE   +    ++ D+ S GI +
Sbjct: 163 XFVGTPFWMAPEVIKQSAYDSKADIWSLGITA 194

>pdb|3A7F|A Chain A, Human Mst3 Kinase Length = 303

Iteration: 1
 Score = 50.1 bits (118), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 48/92 (52%), Gaps = 2/92 (2%)
Query: 674 NLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQT 733
            +  I+   L+ L + HS   IH D+K +NVLL E     ++DFG+A  L+  D   K+ 
Sbjct: 120 QIATILREILKGLDYLHSEKKIHRDIKAANVLLSEHGEVKLADFGVAGQLT--DTQIKRN 177
Query: 734 QTLATIGYMAPEYGTKGRVSTRGDVCSFGIIS 765
             + T  +MAPE   +    ++ D+ S GI +
Sbjct: 178 XFVGTPFWMAPEVIKQSAYDSKADIWSLGITA 209

>pdb|2IVT|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase Domain Length = 314

Iteration: 1
 Score = 50.1 bits (118), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLAT 738
           IS  ++YL     + ++H DL   N+L+ E     ISDFG+++ +  ED   K++Q    
Sbjct: 159 ISQGMQYLA---EMKLVHRDLAARNILVAEGRKMKISDFGLSRDVYEEDSXVKRSQGRIP 215
Query: 739 IGYMAPEYGTKGRVSTRGDVCSFGII 764
           + +MA E       +T+ DV SFG++
Sbjct: 216 VKWMAIESLFDHIYTTQSDVWSFGVL 241

>pdb|1K3A|A Chain A, Structure Of The Insulin-Like Growth Factor 1 Receptor Kinase Length = 299

Iteration: 1
 Score = 49.7 bits (117), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLAT 738
           I+  + YL+       +H DL   N ++ ED    I DFG+ + +   D   K  + L  
Sbjct: 132 IADGMAYLNANK---FVHRDLAARNCMVAEDFTVKIGDFGMTRDIXETDXXRKGGKGLLP 188
Query: 739 IGYMAPEYGTKGRVSTRGDVCSFGII 764
           + +M+PE    G  +T  DV SFG++
Sbjct: 189 VRWMSPESLKDGVFTTYSDVWSFGVV 214

>pdb|2PHK|A Chain A, The Crystal Structure Of A Phosphorylase Kinase Peptide Substrate Complex: Kinase Substrate Recognition Length = 277

Iteration: 1
 Score = 49.7 bits (117), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 3/69 (4%)
Query: 677 KIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTL 736
           KI+ + LE +   H + I+H DLKP N+LLD+DM   ++DFG +  L   D   K  +  
Sbjct: 115 KIMRALLEVICALHKLNIVHRDLKPENILLDDDMNIKLTDFGFSCQL---DPGEKLREVC 171
Query: 737 ATIGYMAPE 745
            T  Y+APE
Sbjct: 172 GTPSYLAPE 180

>pdb|3CKW|A Chain A, Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3, Stk24) Length = 304

Iteration: 1
 Score = 49.7 bits (117), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 48/92 (52%), Gaps = 2/92 (2%)
Query: 674 NLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQT 733
            +  I+   L+ L + HS   IH D+K +NVLL E     ++DFG+A  L+  D   K+ 
Sbjct: 105 QIATILREILKGLDYLHSEKKIHRDIKAANVLLSEHGEVKLADFGVAGQLT--DTQIKRN 162
Query: 734 QTLATIGYMAPEYGTKGRVSTRGDVCSFGIIS 765
             + T  +MAPE   +    ++ D+ S GI +
Sbjct: 163 TFVGTPFWMAPEVIKQSAYDSKADIWSLGITA 194

>pdb|3LVP|A Chain A, Crystal Structure Of Bisphosphorylated Igf1-R Kinase Domain (2p) In Complex With A Bis-Azaindole Inhibitor Length = 336

Iteration: 1
 Score = 49.7 bits (117), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 3/86 (3%)
Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLAT 738
           I+  + YL+   +   +H DL   N ++ ED    I DFG+ + +   D   K  + L  
Sbjct: 169 IADGMAYLN---ANKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLP 225
Query: 739 IGYMAPEYGTKGRVSTRGDVCSFGII 764
           + +M+PE    G  +T  DV SFG++
Sbjct: 226 VRWMSPESLKDGVFTTYSDVWSFGVV 251

>pdb|3I81|A Chain A, Crystal Structure Of Insulin-Like Growth Factor 1 Receptor (Igf-1r-Wt) Complex With Bms-754807 [1-(4-((5-Cyclopropyl- 1h-Pyrazol-3-Yl)amino)pyrrolo[2,1-F][1,2, 4]triazin-2-Yl)-N- (6-Fluoro-3-Pyridinyl)-2-Methyl-L-Prolinamide] Length = 315

Iteration: 1
 Score = 49.7 bits (117), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLAT 738
           I+  + YL+       +H DL   N ++ ED    I DFG+ + +   D   K  + L  
Sbjct: 140 IADGMAYLNANK---FVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLP 196
Query: 739 IGYMAPEYGTKGRVSTRGDVCSFGII 764
           + +M+PE    G  +T  DV SFG++
Sbjct: 197 VRWMSPESLKDGVFTTYSDVWSFGVV 222

>pdb|3ZHP|C Chain C, Human Mst3 (stk24) In Complex With Mo25beta Length = 294

Iteration: 1
 Score = 49.7 bits (117), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 48/92 (52%), Gaps = 2/92 (2%)
Query: 674 NLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQT 733
            +  I+   L+ L + HS   IH D+K +NVLL E     ++DFG+A  L+  D   K+ 
Sbjct: 125 QIATILREILKGLDYLHSEKKIHRDIKAANVLLSEHGEVKLADFGVAGQLT--DTQIKRN 182
Query: 734 QTLATIGYMAPEYGTKGRVSTRGDVCSFGIIS 765
             + T  +MAPE   +    ++ D+ S GI +
Sbjct: 183 TFVGTPFWMAPEVIKQSAYDSKADIWSLGITA 214

>pdb|2ZM3|A Chain A, Complex Structure Of Insulin-Like Growth Factor Receptor And Isoquinolinedione Inhibitor Length = 308

Iteration: 1
 Score = 49.7 bits (117), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLAT 738
           I+  + YL+       +H DL   N ++ ED    I DFG+ + +   D   K  + L  
Sbjct: 141 IADGMAYLNANK---FVHRDLAARNCMVAEDFTVKIGDFGMTRDIXETDXXRKGGKGLLP 197
Query: 739 IGYMAPEYGTKGRVSTRGDVCSFGII 764
           + +M+PE    G  +T  DV SFG++
Sbjct: 198 VRWMSPESLKDGVFTTYSDVWSFGVV 223

>pdb|2IVV|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase Domain Complexed With The Inhibitor Pp1 Length = 314

Iteration: 1
 Score = 49.7 bits (117), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLAT 738
           IS  ++YL     + ++H DL   N+L+ E     ISDFG+++ +  ED   K++Q    
Sbjct: 159 ISQGMQYLA---EMSLVHRDLAARNILVAEGRKMKISDFGLSRDVYEEDSXVKRSQGRIP 215
Query: 739 IGYMAPEYGTKGRVSTRGDVCSFGII 764
           + +MA E       +T+ DV SFG++
Sbjct: 216 VKWMAIESLFDHIYTTQSDVWSFGVL 241

>pdb|1P4O|A Chain A, Structure Of Apo Unactivated Igf-1r Kinase Domain At 1.5a Resolution. Length = 322

Iteration: 1
 Score = 49.7 bits (117), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLAT 738
           I+  + YL+       +H DL   N ++ ED    I DFG+ + +   D   K  + L  
Sbjct: 147 IADGMAYLNANK---FVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLP 203
Query: 739 IGYMAPEYGTKGRVSTRGDVCSFGII 764
           + +M+PE    G  +T  DV SFG++
Sbjct: 204 VRWMSPESLKDGVFTTYSDVWSFGVV 229

>pdb|3QQU|A Chain A, Cocrystal Structure Of Unphosphorylated Igf With Pyrimidine 8 Length = 301

Iteration: 1
 Score = 49.7 bits (117), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLAT 738
           I+  + YL+       +H DL   N ++ ED    I DFG+ + +   D   K  + L  
Sbjct: 134 IADGMAYLNANK---FVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLP 190
Query: 739 IGYMAPEYGTKGRVSTRGDVCSFGII 764
           + +M+PE    G  +T  DV SFG++
Sbjct: 191 VRWMSPESLKDGVFTTYSDVWSFGVV 216

>pdb|3O23|A Chain A, Human Unphosphorylated Igf1-R Kinase Domain In Complex With An Hydantoin Inhibitor Length = 305

Iteration: 1
 Score = 49.7 bits (117), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLAT 738
           I+  + YL+       +H DL   N ++ ED    I DFG+ + +   D   K  + L  
Sbjct: 138 IADGMAYLNANK---FVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLP 194
Query: 739 IGYMAPEYGTKGRVSTRGDVCSFGII 764
           + +M+PE    G  +T  DV SFG++
Sbjct: 195 VRWMSPESLKDGVFTTYSDVWSFGVV 220

>pdb|1M7N|A Chain A, Crystal Structure Of Unactivated Apo Insulin-Like Growth Factor-1 Receptor Kinase Domain Length = 322

Iteration: 1
 Score = 49.7 bits (117), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLAT 738
           I+  + YL+       +H DL   N ++ ED    I DFG+ + +   D   K  + L  
Sbjct: 147 IADGMAYLNANK---FVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLP 203
Query: 739 IGYMAPEYGTKGRVSTRGDVCSFGII 764
           + +M+PE    G  +T  DV SFG++
Sbjct: 204 VRWMSPESLKDGVFTTYSDVWSFGVV 229

>pdb|1PHK|A Chain A, Two Structures Of The Catalytic Domain Of Phosphorylase, Kinase: An Active Protein Kinase Complexed With Nucleotide, Substrate-Analogue And Product Length = 298

Iteration: 1
 Score = 49.7 bits (117), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 3/69 (4%)
Query: 677 KIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTL 736
           KI+ + LE +   H + I+H DLKP N+LLD+DM   ++DFG +  L   D   K  +  
Sbjct: 128 KIMRALLEVICALHKLNIVHRDLKPENILLDDDMNIKLTDFGFSCQL---DPGEKLREVC 184
Query: 737 ATIGYMAPE 745
            T  Y+APE
Sbjct: 185 GTPSYLAPE 193

>pdb|3OG7|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With Plx4032 Length = 289

Iteration: 1
 Score = 49.7 bits (117), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 36/111 (32%), Positives = 56/111 (50%), Gaps = 9/111 (8%)
Query: 657 LKSFEDECEVRKRIRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISD 716
           L + E + E++K I   ++ +  +  ++YLH   +  IIH DLK +N+ L ED    I D
Sbjct: 110 LHASETKFEMKKLI---DIARQTARGMDYLH---AKSIIHRDLKSNNIFLHEDNTVKIGD 163
Query: 717 FGIAKLLSGEDQLSKQTQTLATIGYMAPE---YGTKGRVSTRGDVCSFGII 764
           FG+A   S      +  Q   +I +MAPE          S + DV +FGI+
Sbjct: 164 FGLATEKSRWSGSHQFEQLSGSILWMAPEVIRMQDSNPYSFQSDVYAFGIV 214

>pdb|4FK3|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With Plx3203 Length = 292

Iteration: 1
 Score = 49.7 bits (117), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 36/111 (32%), Positives = 56/111 (50%), Gaps = 9/111 (8%)
Query: 657 LKSFEDECEVRKRIRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISD 716
           L + E + E++K I   ++ +  +  ++YLH   +  IIH DLK +N+ L ED    I D
Sbjct: 110 LHASETKFEMKKLI---DIARQTARGMDYLH---AKSIIHRDLKSNNIFLHEDNTVKIGD 163
Query: 717 FGIAKLLSGEDQLSKQTQTLATIGYMAPE---YGTKGRVSTRGDVCSFGII 764
           FG+A   S      +  Q   +I +MAPE          S + DV +FGI+
Sbjct: 164 FGLATEKSRWSGSHQFEQLSGSILWMAPEVIRMQDSNPYSFQSDVYAFGIV 214

>pdb|3LW0|A Chain A, Igf-1rk In Complex With Ligand Msc1609119a-1 Length = 304

Iteration: 1
 Score = 49.7 bits (117), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLAT 738
           I+  + YL+       +H DL   N ++ ED    I DFG+ + +   D   K  + L  
Sbjct: 137 IADGMAYLNANK---FVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLP 193
Query: 739 IGYMAPEYGTKGRVSTRGDVCSFGII 764
           + +M+PE    G  +T  DV SFG++
Sbjct: 194 VRWMSPESLKDGVFTTYSDVWSFGVV 219

>pdb|3BYS|A Chain A, Co-Crystal Structure Of Lck And Aminopyrimidine Amide 10b Length = 277

Iteration: 1
 Score = 49.7 bits (117), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 674 NLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQT 733
            L+ + +   E + F      IH DL+ +N+L+ + +   I+DFG+A+L+   +  +++ 
Sbjct: 116 KLLDMAAQIAEGMAFIEERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEYTAREG 175
Query: 734 QTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
                I + APE    G  + + DV SFGI+
Sbjct: 176 AKFP-IKWTAPEAINYGTFTIKSDVWSFGIL 205

>pdb|3KMM|A Chain A, Structure Of Human Lck Kinase With A Small Molecule Inhibitor Length = 288

Iteration: 1
 Score = 49.3 bits (116), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 674 NLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQT 733
            L+ + +   E + F      IH DL+ +N+L+ + +   I+DFG+A+L+   +  +++ 
Sbjct: 119 KLLDMAAQIAEGMAFIEERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEXTAREG 178
Query: 734 QTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
                I + APE    G  + + DV SFGI+
Sbjct: 179 AKFP-IKWTAPEAINYGTFTIKSDVWSFGIL 208

>pdb|1OPK|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine Kinase Length = 495

Iteration: 1
 Score = 49.3 bits (116), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 4/86 (4%)
Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLAT 738
           ISS++EYL   +    IH +L   N L+ E+ +  ++DFG+++L++G D  +        
Sbjct: 327 ISSAMEYLEKKN---FIHRNLAARNCLVGENHLVKVADFGLSRLMTG-DTYTAHAGAKFP 382
Query: 739 IGYMAPEYGTKGRVSTRGDVCSFGII 764
           I + APE     + S + DV +FG++
Sbjct: 383 IKWTAPESLAYNKFSIKSDVWAFGVL 408

>pdb|2ZM1|A Chain A, Crystal Structure Of Imidazo Pyrazin 1 Bound To The Kinase Domain Of Human Lck, (Auto-Phosphorylated On Tyr394) Length = 285

Iteration: 1
 Score = 49.3 bits (116), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 674 NLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQT 733
            L+ + +   E + F      IH DL+ +N+L+ + +   I+DFG+A+L+   +  +++ 
Sbjct: 116 KLLDMAAQIAEGMAFIEERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEXTAREG 175
Query: 734 QTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
                I + APE    G  + + DV SFGI+
Sbjct: 176 AKFP-IKWTAPEAINYGTFTIKSDVWSFGIL 205

>pdb|1JQH|A Chain A, Igf-1 Receptor Kinase Domain Length = 308

Iteration: 1
 Score = 49.3 bits (116), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLAT 738
           I+  + YL+       +H DL   N ++ ED    I DFG+ + +   D   K  + L  
Sbjct: 141 IADGMAYLNANK---FVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLP 197
Query: 739 IGYMAPEYGTKGRVSTRGDVCSFGII 764
           + +M+PE    G  +T  DV SFG++
Sbjct: 198 VRWMSPESLKDGVFTTYSDVWSFGVV 223

>pdb|1QPE|A Chain A, Structural Analysis Of The Lymphocyte-Specific Kinase Lck In Complex With Non-Selective And Src Family Selective Kinase Inhibitors Length = 279

Iteration: 1
 Score = 49.3 bits (116), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 674 NLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQT 733
            L+ + +   E + F      IH DL+ +N+L+ + +   I+DFG+A+L+   +  +++ 
Sbjct: 110 KLLDMAAQIAEGMAFIEERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEXTAREG 169
Query: 734 QTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
                I + APE    G  + + DV SFGI+
Sbjct: 170 AKFP-IKWTAPEAINYGTFTIKSDVWSFGIL 199

>pdb|2OJ9|A Chain A, Structure Of Igf-1r Kinase Domain Complexed With A Benzimidazole Inhibitor Length = 307

Iteration: 1
 Score = 49.3 bits (116), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLAT 738
           I+  + YL+       +H DL   N ++ ED    I DFG+ + +   D   K  + L  
Sbjct: 140 IADGMAYLNANK---FVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLP 196
Query: 739 IGYMAPEYGTKGRVSTRGDVCSFGII 764
           + +M+PE    G  +T  DV SFG++
Sbjct: 197 VRWMSPESLKDGVFTTYSDVWSFGVV 222

>pdb|2OFV|A Chain A, Crystal Structure Of Aminoquinazoline 1 Bound To Lck Length = 277

Iteration: 1
 Score = 49.3 bits (116), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 674 NLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQT 733
            L+ + +   E + F      IH DL+ +N+L+ + +   I+DFG+A+L+   +  +++ 
Sbjct: 115 KLLDMAAQIAEGMAFIEERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEYTAREG 174
Query: 734 QTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
                I + APE    G  + + DV SFGI+
Sbjct: 175 AKFP-IKWTAPEAINYGTFTIKSDVWSFGIL 204

>pdb|1QPD|A Chain A, Structural Analysis Of The Lymphocyte-specific Kinase Lck In Complex With Non-selective And Src Family Selective Kinase Inhibitors Length = 279

Iteration: 1
 Score = 49.3 bits (116), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 674 NLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQT 733
            L+ + +   E + F      IH DL+ +N+L+ + +   I+DFG+A+L+   +  +++ 
Sbjct: 110 KLLDMAAQIAEGMAFIEERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDAEXTAREG 169
Query: 734 QTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
                I + APE    G  + + DV SFGI+
Sbjct: 170 AKFP-IKWTAPEAINYGTFTIKSDVWSFGIL 199

>pdb|3KXZ|A Chain A, The Complex Crystal Structure Of Lck With A Probe Molecule W259 Length = 287

Iteration: 1
 Score = 49.3 bits (116), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 674 NLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQT 733
            L+ + +   E + F      IH DL+ +N+L+ + +   I+DFG+A+L+   +  +++ 
Sbjct: 118 KLLDMAAQIAEGMAFIEERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEXTAREG 177
Query: 734 QTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
                I + APE    G  + + DV SFGI+
Sbjct: 178 AKFP-IKWTAPEAINYGTFTIKSDVWSFGIL 207

>pdb|3CD3|A Chain A, Crystal Structure Of Phosphorylated Human Feline Sarcoma Viral Oncogene Homologue (V-Fes) In Complex With Staurosporine And A Consensus Peptide Length = 377

Iteration: 1
 Score = 49.3 bits (116), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 48/96 (50%)
Query: 669 RIRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQ 728
           R+R + L++++  +   + +  S   IH DL   N L+ E  V  ISDFG+++  +    
Sbjct: 209 RLRVKTLLQMVGDAAAGMEYLESKCCIHRDLAARNCLVTEKNVLKISDFGMSREEADGVX 268
Query: 729 LSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
            +        + + APE    GR S+  DV SFGI+
Sbjct: 269 AASGGLRQVPVKWTAPEALNYGRYSSESDVWSFGIL 304

>pdb|2DYL|A Chain A, Crystal Structure Of Human Mitogen-Activated Protein Kinase Kinase 7 Activated Mutant (S287d, T291d) Length = 318

Iteration: 1
 Score = 49.3 bits (116), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 37/101 (36%), Positives = 50/101 (49%), Gaps = 11/101 (10%)
Query: 668 KRIRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGED 727
           +RI  +  V I+ + L YL   H +  IH D+KPSN+LLDE     + DFGI+  L  + 
Sbjct: 123 ERILGKMTVAIVKA-LYYLKEKHGV--IHRDVKPSNILLDERGQIKLCDFGISGRLVDD- 178
Query: 728 QLSKQTQTLATIGYMAPEY-----GTKGRVSTRGDVCSFGI 763
               + ++     YMAPE       TK     R DV S GI
Sbjct: 179 --KAKDRSAGCAAYMAPERIDPPDPTKPDYDIRADVWSLGI 217

>pdb|1OPL|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine Kinase Length = 537

Iteration: 1
 Score = 49.3 bits (116), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 4/86 (4%)
Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLAT 738
           ISS++EYL   +    IH +L   N L+ E+ +  ++DFG+++L++G D  +        
Sbjct: 366 ISSAMEYLEKKN---FIHRNLAARNCLVGENHLVKVADFGLSRLMTG-DTYTAHAGAKFP 421
Query: 739 IGYMAPEYGTKGRVSTRGDVCSFGII 764
           I + APE     + S + DV +FG++
Sbjct: 422 IKWTAPESLAYNKFSIKSDVWAFGVL 447

>pdb|3BKB|A Chain A, Crystal Structure Of Human Feline Sarcoma Viral Oncogene Homologue (V- Fes) Length = 377

Iteration: 1
 Score = 49.3 bits (116), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 48/96 (50%)
Query: 669 RIRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQ 728
           R+R + L++++  +   + +  S   IH DL   N L+ E  V  ISDFG+++  +    
Sbjct: 209 RLRVKTLLQMVGDAAAGMEYLESKCCIHRDLAARNCLVTEKNVLKISDFGMSREEADGVY 268
Query: 729 LSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
            +        + + APE    GR S+  DV SFGI+
Sbjct: 269 AASGGLRQVPVKWTAPEALNYGRYSSESDVWSFGIL 304

>pdb|2W99|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin Length = 306

Iteration: 1
 Score = 49.3 bits (116), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 37/149 (24%), Positives = 71/149 (47%), Gaps = 11/149 (7%)
Query: 623 LLRATDRFSENNLIGIGN-------GMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNL 675
           LLR  + F   N++ + +         E+ V +  +  ++ L+++ D+      +    +
Sbjct: 56  LLRRLEAFEHPNVVRLMDVCATSRTDREIKVTLVFEHVDQDLRTYLDKAPP-PGLPAETI 114
Query: 676 VKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQT 735
             ++   L  L F H+  I+H DLKP N+L+       ++DFG+A++ S +  L+     
Sbjct: 115 KDLMRQFLRGLDFLHANCIVHRDLKPENILVTSGGTVKLADFGLARIYSYQMALAP---V 171
Query: 736 LATIGYMAPEYGTKGRVSTRGDVCSFGII 764
           + T+ Y APE   +   +T  D+ S G I
Sbjct: 172 VVTLWYRAPEVLLQSTYATPVDMWSVGCI 200

>pdb|3I7C|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii (Tgcdpk1) In Complex With Bumped Kinase Inhibitor Na-Pp2 Length = 484

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 49/106 (46%), Gaps = 7/106 (6%)
Query: 662 DECEVRKRIRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLD---EDMVAHISDFG 718
           DE   RKR    +  +II   L  + + H   I+H DLKP N+LL+   +D    I DFG
Sbjct: 115 DEIISRKRFSEVDAARIIRQVLSGITYXHKNKIVHRDLKPENLLLESKSKDANIRIIDFG 174
Query: 719 IAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
           ++          K    + T  Y+APE    G    + DV S G+I
Sbjct: 175 LSTHFEAS---KKXKDKIGTAYYIAPEV-LHGTYDEKCDVWSTGVI 216

>pdb|3DAK|A Chain A, Crystal Structure Of Domain-Swapped Osr1 Kinase Domain Length = 290

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 48/95 (50%), Gaps = 4/95 (4%)
Query: 675 LVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQ 734
           +  I+   LE L + H    IH D+K  N+LL ED    I+DFG++  L+    +++   
Sbjct: 118 IATILREVLEGLEYLHKNGQIHRDVKAGNILLGEDGSVQIADFGVSAFLATGGDITRNKV 177
Query: 735 TLATIG---YMAPEYGTKGR-VSTRGDVCSFGIIS 765
               +G   +MAPE   + R    + D+ SFGI +
Sbjct: 178 RKTFVGTPCWMAPEVMEQVRGYDFKADIWSFGITA 212

>pdb|2PL0|A Chain A, Lck Bound To Imatinib Length = 289

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 674 NLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQT 733
            L+ + +   E + F      IH DL+ +N+L+ + +   I+DFG+A+L+   +  +++ 
Sbjct: 120 KLLDMAAQIAEGMAFIEERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEYTAREG 179
Query: 734 QTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
                I + APE    G  + + DV SFGI+
Sbjct: 180 AKFP-IKWTAPEAINYGTFTIKSDVWSFGIL 209

>pdb|2VWI|A Chain A, Structure Of The Osr1 Kinase, A Hypertension Drug Target Length = 303

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 4/92 (4%)
Query: 678 IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLA 737
           I+   LE L + H    IH D+K  N+LL ED    I+DFG++  L+    +++      
Sbjct: 126 ILREVLEGLEYLHKNGQIHRDVKAGNILLGEDGSVQIADFGVSAFLATGGDITRNKVRKT 185
Query: 738 TIG---YMAPEYGTKGR-VSTRGDVCSFGIIS 765
            +G   +MAPE   + R    + D+ SFGI +
Sbjct: 186 FVGTPCWMAPEVMEQVRGYDFKADIWSFGITA 217

>pdb|3DTC|A Chain A, Crystal Structure Of Mixed-Lineage Kinase Mlk1 Complexed With Compound 16 Length = 271

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 47/99 (47%), Gaps = 12/99 (12%)
Query: 674 NLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDM--------VAHISDFGIAKLLSG 725
           N    I+  + YLH    +PIIH DLK SN+L+ + +        +  I+DFG+A+    
Sbjct: 109 NWAVQIARGMNYLHDEAIVPIIHRDLKSSNILILQKVENGDLSNKILKITDFGLAR---- 164
Query: 726 EDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
           E   + +        +MAPE       S   DV S+G++
Sbjct: 165 EWHRTTKMSAAGAYAWMAPEVIRASMFSKGSDVWSYGVL 203

>pdb|3LXN|A Chain A, Structural And Thermodynamic Characterization Of The Tyk2 And Jak3 Kinase Domains In Complex With Cp-690550 And Cmp-6 Length = 318

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 43/90 (47%), Gaps = 4/90 (4%)
Query: 675 LVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLL-SGEDQLSKQT 733
             + I   + YLH  H    IH DL   NVLLD D +  I DFG+AK +  G +    + 
Sbjct: 139 FAQQICEGMAYLHAQH---YIHRDLAARNVLLDNDRLVKIGDFGLAKAVPEGHEXYRVRE 195
Query: 734 QTLATIGYMAPEYGTKGRVSTRGDVCSFGI 763
              + + + APE   + +     DV SFG+
Sbjct: 196 DGDSPVFWYAPECLKEYKFYYASDVWSFGV 225

>pdb|3UIU|A Chain A, Crystal Structure Of Apo-Pkr Kinase Domain Length = 306

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 48/91 (52%), Gaps = 6/91 (6%)
Query: 674 NLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQT 733
            L + I+  ++Y+H   S  +IH DLKPSN+ L +     I DFG+   L  +    K+T
Sbjct: 140 ELFEQITKGVDYIH---SKKLIHRDLKPSNIFLVDTKQVKIGDFGLVTSLKND---GKRT 193
Query: 734 QTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
           ++  T+ YM+PE  +        D+ + G+I
Sbjct: 194 RSKGTLRYMSPEQISSQDYGKEVDLYALGLI 224

>pdb|3A4O|X Chain X, Lyn Kinase Domain Length = 286

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Query: 695 IHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVST 754
           IH DL+ +NVL+ E ++  I+DFG+A+++   +  +++      I + APE    G  + 
Sbjct: 132 IHRDLRAANVLVSESLMCKIADFGLARVIEDNEYTAREGAKFP-IKWTAPEAINFGCFTI 190
Query: 755 RGDVCSFGII 764
           + DV SFGI+
Sbjct: 191 KSDVWSFGIL 200

>pdb|3HNG|A Chain A, Crystal Structure Of Vegfr1 In Complex With N-(4-chlorophenyl)-2- ((pyridin-4-ylmethyl)amino)benzamide Length = 360

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 59/130 (45%), Gaps = 13/130 (10%)
Query: 686 LHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPE 745
           + F  S   IH DL   N+LL E+ V  I DFG+A+ +       ++  T   + +MAPE
Sbjct: 212 MEFLSSRKCIHRDLAARNILLSENNVVKICDFGLARDIYKNPDYVRKGDTRLPLKWMAPE 271
Query: 746 YGTKGRVSTRGDVCSFGII------SGGKETRSMTVGET-CTPVRESKYEVHPATTTIME 798
                  ST+ DV S+G++       GG     + + E  C+ +RE      P  +T   
Sbjct: 272 SIFDKIYSTKSDVWSYGVLLWEIFSLGGSPYPGVQMDEDFCSRLREGMRMRAPEYST--- 328
Query: 799 HPLPRVGEVM 808
              P + ++M
Sbjct: 329 ---PEIYQIM 335

>pdb|3I79|A Chain A, Calcium-Dependent Protein Kinase 1 From Toxoplasma Gondii (Tgcdpk1) Length = 484

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 49/106 (46%), Gaps = 7/106 (6%)
Query: 662 DECEVRKRIRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLD---EDMVAHISDFG 718
           DE   RKR    +  +II   L  + + H   I+H DLKP N+LL+   +D    I DFG
Sbjct: 115 DEIISRKRFSEVDAARIIRQVLSGITYMHKNKIVHRDLKPENLLLESKSKDANIRIIDFG 174
Query: 719 IAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
           ++          K    + T  Y+APE    G    + DV S G+I
Sbjct: 175 LSTHFEAS---KKMKDKIGTAYYIAPEV-LHGTYDEKCDVWSTGVI 216

>pdb|3IS5|A Chain A, Crystal Structure Of Cdpk Kinase Domain From Toxoplasma Gondii, Tgme49_018720 Length = 285

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 50/95 (52%), Gaps = 12/95 (12%)
Query: 674 NLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAH----ISDFGIAKLLSGEDQL 729
            L+K + ++L Y H  H   ++H DLKP N+L  +D   H    I DFG+A+L   ++  
Sbjct: 128 ELMKQMMNALAYFHSQH---VVHKDLKPENILF-QDTSPHSPIKIIDFGLAELFKSDEH- 182
Query: 730 SKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
              T    T  YMAPE   K  V+ + D+ S G++
Sbjct: 183 --STNAAGTALYMAPEV-FKRDVTFKCDIWSAGVV 214

>pdb|3LIJ|A Chain A, Crystal Structure Of Full Length Cpcdpk3 (Cgd5_820) In Complex With Ca2+ And Amppnp Length = 494

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/93 (35%), Positives = 52/93 (55%), Gaps = 10/93 (10%)
Query: 675 LVKIISSSLEYLHFGHSIPIIHCDLKPSNVLL---DEDMVAHISDFGIAKLLSGEDQLSK 731
           ++K + S + YLH  H+I  +H DLKP N+LL   ++D +  I DFG++ +   +    K
Sbjct: 141 IIKQVLSGVTYLH-KHNI--VHRDLKPENLLLESKEKDALIKIVDFGLSAVFENQ---KK 194
Query: 732 QTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
             + L T  Y+APE   K +   + DV S G+I
Sbjct: 195 MKERLGTAYYIAPEVLRK-KYDEKCDVWSIGVI 226

>pdb|3KU2|A Chain A, Crystal Structure Of Inactivated Form Of Cdpk1 From Toxoplasma Gondii, Tgme49.101440 Length = 507

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 51/106 (48%), Gaps = 7/106 (6%)
Query: 662 DECEVRKRIRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLD---EDMVAHISDFG 718
           DE   RKR    +  +II   L  + + H   I+H DLKP N+LL+   +D    I DFG
Sbjct: 138 DEIISRKRFSEVDAARIIRQVLSGITYMHKNKIVHRDLKPENLLLESKSKDANIRIIDFG 197
Query: 719 IAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
           ++       ++  +   + T  Y+APE    G    + DV S G+I
Sbjct: 198 LSTHFEASKKMKDK---IGTAYYIAPEV-LHGTYDEKCDVWSTGVI 239

>pdb|3HX4|A Chain A, Crystal Structure Of Cdpk1 Of Toxoplasma Gondii, Tgme49_101440, In Presence Of Calcium Length = 508

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 51/106 (48%), Gaps = 7/106 (6%)
Query: 662 DECEVRKRIRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLD---EDMVAHISDFG 718
           DE   RKR    +  +II   L  + + H   I+H DLKP N+LL+   +D    I DFG
Sbjct: 139 DEIISRKRFSEVDAARIIRQVLSGITYMHKNKIVHRDLKPENLLLESKSKDANIRIIDFG 198
Query: 719 IAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
           ++       ++  +   + T  Y+APE    G    + DV S G+I
Sbjct: 199 LSTHFEASKKMKDK---IGTAYYIAPEV-LHGTYDEKCDVWSTGVI 240

>pdb|3MA6|A Chain A, Crystal Structure Of Kinase Domain Of Tgcdpk1 In Presence Of 3brb-Pp1 Length = 298

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 51/106 (48%), Gaps = 7/106 (6%)
Query: 662 DECEVRKRIRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLD---EDMVAHISDFG 718
           DE   RKR    +  +II   L  + + H   I+H DLKP N+LL+   +D    I DFG
Sbjct: 121 DEIISRKRFSEVDAARIIRQVLSGITYMHKNKIVHRDLKPENLLLESKSKDANIRIIDFG 180
Query: 719 IAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
           ++       ++  +   + T  Y+APE    G    + DV S G+I
Sbjct: 181 LSTHFEASKKMKDK---IGTAYYIAPEV-LHGTYDEKCDVWSTGVI 222

>pdb|2W96|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin Length = 306

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/149 (24%), Positives = 70/149 (46%), Gaps = 11/149 (7%)
Query: 623 LLRATDRFSENNLIGIGN-------GMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNL 675
           LLR  + F   N++ + +         E+ V +  +  ++ L+++ D+      +    +
Sbjct: 56  LLRRLEAFEHPNVVRLMDVCATSRTDREIKVTLVFEHVDQDLRTYLDKAPP-PGLPAETI 114
Query: 676 VKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQT 735
             ++   L  L F H+  I+H DLKP N+L+       ++DFG+A++ S +  L      
Sbjct: 115 KDLMRQFLRGLDFLHANCIVHRDLKPENILVTSGGTVKLADFGLARIYSYQMALDP---V 171
Query: 736 LATIGYMAPEYGTKGRVSTRGDVCSFGII 764
           + T+ Y APE   +   +T  D+ S G I
Sbjct: 172 VVTLWYRAPEVLLQSTYATPVDMWSVGCI 200

>pdb|1MQB|A Chain A, Crystal Structure Of Ephrin A2 (Epha2) Receptor Protein Kinase Length = 333

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 67/130 (51%), Gaps = 11/130 (8%)
Query: 675 LVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQ 734
           +++ I++ ++YL    ++  +H DL   N+L++ ++V  +SDFG++++L  + + +  T 
Sbjct: 152 MLRGIAAGMKYLA---NMNYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEATYTTS 208
Query: 735 TLAT-IGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGETCTPVRE-SKYEVHPA 792
                I + APE  +  + ++  DV SFGI+        MT GE   P  E S +EV  A
Sbjct: 209 GGKIPIRWTAPEAISYRKFTSASDVWSFGIVM----WEVMTYGE--RPYWELSNHEVMKA 262
Query: 793 TTTIMEHPLP 802
                  P P
Sbjct: 263 INDGFRLPTP 272

>pdb|1QL6|A Chain A, The Catalytic Mechanism Of Phosphorylase Kinase Probed By Mutational Studies Length = 298

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
Query: 677 KIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTL 736
           KI+ + LE +   H + I+H DLKP N+LLD+DM   ++DFG +  L   D   K     
Sbjct: 128 KIMRALLEVICALHKLNIVHRDLKPENILLDDDMNIKLTDFGFSCQL---DPGEKLRSVC 184
Query: 737 ATIGYMAPE 745
            T  Y+APE
Sbjct: 185 GTPSYLAPE 193

>pdb|3D94|A Chain A, Crystal Structure Of The Insulin-Like Growth Factor-1 Receptor Kinase In Complex With Pqip Length = 301

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLAT 738
           I+  + YL+       +H DL   N  + ED    I DFG+ + +   D   K  + L  
Sbjct: 134 IADGMAYLNANK---FVHRDLAARNCXVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLP 190
Query: 739 IGYMAPEYGTKGRVSTRGDVCSFGII 764
           + +M+PE    G  +T  DV SFG++
Sbjct: 191 VRWMSPESLKDGVFTTYSDVWSFGVV 216

>pdb|2PVY|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain Harboring The Pathogenic K659n Mutation Responsible For An Unclassified Craniosynostosis Syndrome. Length = 324

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 56/123 (45%), Gaps = 9/123 (7%)
Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLAT 738
           ++  +EYL    S   IH DL   NVL+ E+ V  I+DFG+A+ ++  D     T     
Sbjct: 166 LARGMEYLA---SQKCIHRDLAARNVLVTENNVMKIADFGLARDINNIDYYKNTTNGRLP 222
Query: 739 IGYMAPEYGTKGRVSTRGDVCSFGIIS------GGKETRSMTVGETCTPVRESKYEVHPA 792
           + +MAPE       + + DV SFG++       GG     + V E    ++E      PA
Sbjct: 223 VKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVEELFKLLKEGHRMDKPA 282
Query: 793 TTT 795
             T
Sbjct: 283 NCT 285

>pdb|3OMV|A Chain A, Crystal Structure Of C-Raf (Raf-1) Length = 307

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 47/94 (50%), Gaps = 3/94 (3%)
Query: 674 NLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQT 733
            L+ I   + + + + H+  IIH D+K +N+ L E +   I DFG+A + S      +  
Sbjct: 133 QLIDIARQTAQGMDYLHAKNIIHRDMKSNNIFLHEGLTVKIGDFGLATVKSRWSGSQQVE 192
Query: 734 QTLATIGYMAPE---YGTKGRVSTRGDVCSFGII 764
           Q   ++ +MAPE          S + DV S+GI+
Sbjct: 193 QPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIV 226

>pdb|2YZA|A Chain A, Crystal Structure Of Kinase Domain Of Human 5'-Amp-Activated Protein Kinase Alpha-2 Subunit Mutant (T172d) Length = 276

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 51/94 (54%), Gaps = 9/94 (9%)
Query: 673 RNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQ 732
           R L + I S+++Y H      ++H DLKP NVLLD  M A I+DFG++ ++S  + L   
Sbjct: 114 RRLFQQILSAVDYCH---RHMVVHRDLKPENVLLDAHMNAKIADFGLSNMMSDGEFLR-- 168
Query: 733 TQTLATIGYMAPEYGTKGRVST--RGDVCSFGII 764
             +  +  Y APE    GR+      D+ S G+I
Sbjct: 169 -DSCGSPNYAAPEV-ISGRLYAGPEVDIWSCGVI 200

>pdb|3C4X|A Chain A, Crystal Structure Of G Protein Coupled Receptor Kinase 1 Bound To Atp And Magnesium Chloride At 2.9a Length = 543

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/68 (47%), Positives = 41/68 (60%), Gaps = 7/68 (10%)
Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIA-KLLSGEDQLSKQTQTLA 737
           I S LE+LH      II+ DLKP NVLLD+D    ISD G+A +L +G+   +K      
Sbjct: 298 IVSGLEHLH---QRNIIYRDLKPENVLLDDDGNVRISDLGLAVELKAGQ---TKTKGYAG 351
Query: 738 TIGYMAPE 745
           T G+MAPE
Sbjct: 352 TPGFMAPE 359

>pdb|3C4W|A Chain A, Crystal Structure Of G Protein Coupled Receptor Kinase 1 Bound To Atp And Magnesium Chloride At 2.7a Length = 543

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/68 (47%), Positives = 41/68 (60%), Gaps = 7/68 (10%)
Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIA-KLLSGEDQLSKQTQTLA 737
           I S LE+LH      II+ DLKP NVLLD+D    ISD G+A +L +G+   +K      
Sbjct: 298 IVSGLEHLH---QRNIIYRDLKPENVLLDDDGNVRISDLGLAVELKAGQ---TKTKGYAG 351
Query: 738 TIGYMAPE 745
           T G+MAPE
Sbjct: 352 TPGFMAPE 359

>pdb|3T8O|A Chain A, Rhodopsin Kinase (grk1) L166k Mutant At 2.5a Resolution Length = 543

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/68 (47%), Positives = 41/68 (60%), Gaps = 7/68 (10%)
Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIA-KLLSGEDQLSKQTQTLA 737
           I S LE+LH      II+ DLKP NVLLD+D    ISD G+A +L +G+   +K      
Sbjct: 298 IVSGLEHLH---QRNIIYRDLKPENVLLDDDGNVRISDLGLAVELKAGQ---TKTKGYAG 351
Query: 738 TIGYMAPE 745
           T G+MAPE
Sbjct: 352 TPGFMAPE 359

>pdb|1IR3|A Chain A, Phosphorylated Insulin Receptor Tyrosine Kinase In Complex With Peptide Substrate And Atp Analog Length = 306

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLAT 738
           I+  + YL+   +   +H DL   N ++  D    I DFG+ + +   D   K  + L  
Sbjct: 139 IADGMAYLN---AKKFVHRDLAARNCMVAHDFTVKIGDFGMTRDIXETDXXRKGGKGLLP 195
Query: 739 IGYMAPEYGTKGRVSTRGDVCSFGII 764
           + +MAPE    G  +T  D+ SFG++
Sbjct: 196 VRWMAPESLKDGVFTTSSDMWSFGVV 221

>pdb|1QCF|A Chain A, Crystal Structure Of Hck In Complex With A Src Family- Selective Tyrosine Kinase Inhibitor Length = 454

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 674 NLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQT 733
            L+   +   E + F      IH DL+ +N+L+   +V  I+DFG+A+++   +  +++ 
Sbjct: 285 KLIDFSAQIAEGMAFIEQRNYIHRDLRAANILVSASLVCKIADFGLARVIEDNEYTAREG 344
Query: 734 QTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
                I + APE    G  + + DV SFGI+
Sbjct: 345 AKFP-IKWTAPEAINFGSFTIKSDVWSFGIL 374

>pdb|3LCK|A Chain A, The Kinase Domain Of Human Lymphocyte Kinase (Lck), Activated Form (Auto-Phosphorylated On Tyr394) Length = 271

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Query: 695 IHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVST 754
           IH DL+ +N+L+ + +   I+DFG+A+L+   +  +++      I + APE    G  + 
Sbjct: 131 IHRDLRAANILVSDTLSCKIADFGLARLIEDNEXTAREGAKFP-IKWTAPEAINYGTFTI 189
Query: 755 RGDVCSFGII 764
           + DV SFGI+
Sbjct: 190 KSDVWSFGIL 199

>pdb|3BYM|A Chain A, X-Ray Co-Crystal Structure Aminobenzimidazole Triazine 1 Bound To Lck Length = 272

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Query: 695 IHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVST 754
           IH DL+ +N+L+ + +   I+DFG+A+L+   +  +++      I + APE    G  + 
Sbjct: 132 IHRDLRAANILVSDTLSCKIADFGLARLIEDNEXTAREGAKFP-IKWTAPEAINYGTFTI 190
Query: 755 RGDVCSFGII 764
           + DV SFGI+
Sbjct: 191 KSDVWSFGIL 200

>pdb|2OFU|A Chain A, X-Ray Crystal Structure Of 2-Aminopyrimidine Carbamate 43 Bound To Lck Length = 273

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Query: 695 IHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVST 754
           IH DL+ +N+L+ + +   I+DFG+A+L+   +  +++      I + APE    G  + 
Sbjct: 133 IHRDLRAANILVSDTLSCKIADFGLARLIEDNEXTAREGAKFP-IKWTAPEAINYGTFTI 191
Query: 755 RGDVCSFGII 764
           + DV SFGI+
Sbjct: 192 KSDVWSFGIL 201

>pdb|4G31|A Chain A, Crystal Structure Of Gsk6414 Bound To Perk (R587-R1092, Delete A660- T867) At 2.28 A Resolution Length = 299

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 51/111 (45%), Gaps = 11/111 (9%)
Query: 664 CEVRKRIRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLL 723
           C + +R R   L  I     E + F HS  ++H DLKPSN+    D V  + DFG+   +
Sbjct: 110 CTIEERERSVCL-HIFLQIAEAVEFLHSKGLMHRDLKPSNIFFTMDDVVKVGDFGLVTAM 168
Query: 724 SGEDQ----------LSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
             +++           ++ T  + T  YM+PE       S + D+ S G+I
Sbjct: 169 DQDEEEQTVLTPMPAYARHTGQVGTKLYMSPEQIHGNSYSHKVDIFSLGLI 219

>pdb|2Z8C|A Chain A, Phosphorylated Insulin Receptor Tyrosine Kinase In Complex With (4-{[5-Carbamoyl-4-(3-Methylanilino)pyrimidin-2- Yl]amino}phenyl)acetic Acid Length = 303

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLAT 738
           I+  + YL+   +   +H DL   N ++  D    I DFG+ + +   D   K  + L  
Sbjct: 136 IADGMAYLN---AKKFVHRDLAARNCMVAHDFTVKIGDFGMTRDIXETDXXRKGGKGLLP 192
Query: 739 IGYMAPEYGTKGRVSTRGDVCSFGII 764
           + +MAPE    G  +T  D+ SFG++
Sbjct: 193 VRWMAPESLKDGVFTTSSDMWSFGVV 218

>pdb|3QC9|A Chain A, Crystal Structure Of Cross-Linked Bovine Grk1 T8cN480C DOUBLE MUTANT Complexed With Adp And Mg Length = 543

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/68 (47%), Positives = 41/68 (60%), Gaps = 7/68 (10%)
Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIA-KLLSGEDQLSKQTQTLA 737
           I S LE+LH      II+ DLKP NVLLD+D    ISD G+A +L +G+   +K      
Sbjct: 298 IVSGLEHLH---QRNIIYRDLKPENVLLDDDGNVRISDLGLAVELKAGQ---TKTKGYAG 351
Query: 738 TIGYMAPE 745
           T G+MAPE
Sbjct: 352 TPGFMAPE 359

>pdb|1RQQ|A Chain A, Crystal Structure Of The Insulin Receptor Kinase In Complex With The Sh2 Domain Of Aps Length = 306

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLAT 738
           I+  + YL+   +   +H DL   N ++  D    I DFG+ + +   D   K  + L  
Sbjct: 139 IADGMAYLN---AKKFVHRDLAARNCMVAHDFTVKIGDFGMTRDIXETDXXRKGGKGLLP 195
Query: 739 IGYMAPEYGTKGRVSTRGDVCSFGII 764
           + +MAPE    G  +T  D+ SFG++
Sbjct: 196 VRWMAPESLKDGVFTTSSDMWSFGVV 221

>pdb|3GEN|A Chain A, The 1.6 A Crystal Structure Of Human Bruton's Tyrosine Kinase Bound To A Pyrrolopyrimidine-Containing Compound Length = 283

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 23/100 (23%), Positives = 53/100 (53%), Gaps = 1/100 (1%)
Query: 665 EVRKRIRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLS 724
           E+R R + + L+++     E + +  S   +H DL   N L+++  V  +SDFG+++ + 
Sbjct: 112 EMRHRFQTQQLLEMCKDVCEAMEYLESKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVL 171
Query: 725 GEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
            +D+ +    +   + +  PE     + S++ D+ +FG++
Sbjct: 172 -DDEYTSSVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVL 210

>pdb|1UA2|A Chain A, Crystal Structure Of Human Cdk7 Length = 346

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 46/84 (54%), Gaps = 3/84 (3%)
Query: 682 SLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGY 741
           +L+ L + H   I+H DLKP+N+LLDE+ V  ++DFG+AK     ++       + T  Y
Sbjct: 121 TLQGLEYLHQHWILHRDLKPNNLLLDENGVLKLADFGLAKSFGSPNR--AYXHQVVTRWY 178
Query: 742 MAPEYGTKGRVSTRG-DVCSFGII 764
            APE     R+   G D+ + G I
Sbjct: 179 RAPELLFGARMYGVGVDMWAVGCI 202

>pdb|2XIK|A Chain A, Structure Of Human Ysk1 (Yeast Sps1-Ste20-Related Kinase 1) Length = 294

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 47/91 (51%), Gaps = 2/91 (2%)
Query: 675 LVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQ 734
           +  I+   L+ L + HS   IH D+K +NVLL E     ++DFG+A  L+  D   K+  
Sbjct: 118 IATILREILKGLDYLHSERKIHRDIKAANVLLSEQGDVKLADFGVAGQLT--DTQIKRNX 175
Query: 735 TLATIGYMAPEYGTKGRVSTRGDVCSFGIIS 765
            + T  +MAPE   +     + D+ S GI +
Sbjct: 176 FVGTPFWMAPEVIKQSAYDFKADIWSLGITA 206

>pdb|1IRK|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The Human Insulin Receptor Length = 306

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLAT 738
           I+  + YL+   +   +H DL   N ++  D    I DFG+ + +   D   K  + L  
Sbjct: 139 IADGMAYLN---AKKFVHRDLAARNCMVAHDFTVKIGDFGMTRDIYETDYYRKGGKGLLP 195
Query: 739 IGYMAPEYGTKGRVSTRGDVCSFGII 764
           + +MAPE    G  +T  D+ SFG++
Sbjct: 196 VRWMAPESLKDGVFTTSSDMWSFGVV 221

>pdb|2C30|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 6 Length = 321

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 50/96 (52%), Gaps = 2/96 (2%)
Query: 669 RIRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQ 728
           R+    +  +  + L+ L + H+  +IH D+K  ++LL  D    +SDFG    +S +  
Sbjct: 137 RLNEEQIATVCEAVLQALAYLHAQGVIHRDIKSDSILLTLDGRVKLSDFGFCAQISKD-- 194
Query: 729 LSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
           + K+   + T  +MAPE  ++   +T  D+ S GI+
Sbjct: 195 VPKRKXLVGTPYWMAPEVISRSLYATEVDIWSLGIM 230

>pdb|2H6D|A Chain A, Protein Kinase Domain Of The Human 5'-Amp-Activated Protein Kinase Catalytic Subunit Alpha-2 (Ampk Alpha-2 Chain) Length = 276

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 51/94 (54%), Gaps = 9/94 (9%)
Query: 673 RNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQ 732
           R L + I S+++Y H      ++H DLKP NVLLD  M A I+DFG++ ++S  + L   
Sbjct: 114 RRLFQQILSAVDYCH---RHMVVHRDLKPENVLLDAHMNAKIADFGLSNMMSDGEFLR-- 168
Query: 733 TQTLATIGYMAPEYGTKGRVST--RGDVCSFGII 764
             +  +  Y APE    GR+      D+ S G+I
Sbjct: 169 -TSCGSPNYAAPEV-ISGRLYAGPEVDIWSCGVI 200

>pdb|3SXR|A Chain A, Crystal Structure Of Bmx Non-Receptor Tyrosine Kinase Complex With Dasatinib Length = 268

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 43/149 (28%), Positives = 66/149 (44%), Gaps = 15/149 (10%)
Query: 668 KRIRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGED 727
           K +    L+++     E + F  S   IH DL   N L+D D+   +SDFG+ + +  +D
Sbjct: 99  KGLEPSQLLEMCYDVCEGMAFLESHQFIHRDLAARNCLVDRDLCVKVSDFGMTRYVL-DD 157
Query: 728 QLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII-----SGGKETRSM-TVGETCTP 781
           Q      T   + + APE     + S++ DV +FGI+     S GK    + T  E    
Sbjct: 158 QYVSSVGTKFPVKWSAPEVFHYFKYSSKSDVWAFGILMWEVFSLGKMPYDLYTNSEVVLK 217
Query: 782 VRESK--YEVHPATTTIME------HPLP 802
           V +    Y  H A+ TI +      H LP
Sbjct: 218 VSQGHRLYRPHLASDTIYQIMYSCWHELP 246

>pdb|2F7E|E Chain E, Pka Complexed With (S)-2-(1h-Indol-3-Yl)-1-(5-Isoquinolin-6- Yl-Pyridin-3-Yloxymethyl-Etylamine Length = 351

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 39/65 (60%), Gaps = 10/65 (15%)
Query: 682 SLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTL-ATIG 740
           + EYLH   S+ +I+ DLKP N+L+D+     ++DFG AK + G      +T TL  T  
Sbjct: 154 TFEYLH---SLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKG------RTWTLCGTPE 204
Query: 741 YMAPE 745
           Y+APE
Sbjct: 205 YLAPE 209

>pdb|3ETA|A Chain A, Kinase Domain Of Insulin Receptor Complexed With A Pyrrolo Pyridine Inhibitor Length = 317

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLAT 738
           I+  + YL+   +   +H DL   N ++  D    I DFG+ + +   D   K  + L  
Sbjct: 138 IADGMAYLN---AKKFVHRDLAARNCMVAHDFTVKIGDFGMTRDIYETDYYRKGGKGLLP 194
Query: 739 IGYMAPEYGTKGRVSTRGDVCSFGII 764
           + +MAPE    G  +T  D+ SFG++
Sbjct: 195 VRWMAPESLKDGVFTTSSDMWSFGVV 220

>pdb|3FHI|A Chain A, Crystal Structure Of A Complex Between The Catalytic And Regulatory (Ri{alpha}) Subunits Of Pka Length = 350

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 39/65 (60%), Gaps = 10/65 (15%)
Query: 682 SLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLA-TIG 740
           + EYLH   S+ +I+ DLKP N+L+D+     ++DFG AK + G      +T  LA T  
Sbjct: 153 TFEYLH---SLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKG------RTWXLAGTPE 203
Query: 741 YMAPE 745
           Y+APE
Sbjct: 204 YLAPE 208

>pdb|4GG5|A Chain A, Crystal Structure Of Cmet In Complex With Novel Inhibitor Length = 319

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 49/95 (51%), Gaps = 5/95 (5%)
Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLAT 738
           ++  ++YL    S   +H DL   N +LDE     ++DFG+A+ +  ++  S   +T A 
Sbjct: 161 VAKGMKYLA---SKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAK 217
Query: 739 --IGYMAPEYGTKGRVSTRGDVCSFGIISGGKETR 771
             + +MA E     + +T+ DV SFG++     TR
Sbjct: 218 LPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTR 252

>pdb|2OF2|A Chain A, Crystal Structure Of Furanopyrimidine 8 Bound To Lck Length = 271

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Query: 695 IHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVST 754
           IH DL+ +N+L+ + +   I+DFG+A+L+   +  +++      I + APE    G  + 
Sbjct: 131 IHRDLRAANILVSDTLSCKIADFGLARLIEDNEYTAREGAKFP-IKWTAPEAINYGTFTI 189
Query: 755 RGDVCSFGII 764
           + DV SFGI+
Sbjct: 190 KSDVWSFGIL 199

>pdb|2OG8|A Chain A, Crystal Structure Of Aminoquinazoline 36 Bound To Lck Length = 265

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Query: 695 IHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVST 754
           IH DL+ +N+L+ + +   I+DFG+A+L+   +  +++      I + APE    G  + 
Sbjct: 126 IHRDLRAANILVSDTLSCKIADFGLARLIEDNEYTAREGAKFP-IKWTAPEAINYGTFTI 184
Query: 755 RGDVCSFGII 764
           + DV SFGI+
Sbjct: 185 KSDVWSFGIL 194

>pdb|3Q6U|A Chain A, Structure Of The Apo Met Receptor Kinase In The Dually-Phosphorylated, Activated State Length = 308

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 49/95 (51%), Gaps = 5/95 (5%)
Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLAT 738
           ++  ++YL    S   +H DL   N +LDE     ++DFG+A+ +  ++  S   +T A 
Sbjct: 142 VAKGMKYLA---SKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAK 198
Query: 739 --IGYMAPEYGTKGRVSTRGDVCSFGIISGGKETR 771
             + +MA E     + +T+ DV SFG++     TR
Sbjct: 199 LPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTR 233

>pdb|2WD1|A Chain A, Human C-Met Kinase In Complex With Azaindole Inhibitor Length = 292

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 49/95 (51%), Gaps = 5/95 (5%)
Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLAT 738
           ++  ++YL    S   +H DL   N +LDE     ++DFG+A+ +  ++  S   +T A 
Sbjct: 134 VAKGMKYLA---SKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAK 190
Query: 739 --IGYMAPEYGTKGRVSTRGDVCSFGIISGGKETR 771
             + +MA E     + +T+ DV SFG++     TR
Sbjct: 191 LPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTR 225

>pdb|2ZOQ|A Chain A, Structural Dissection Of Human Mitogen-Activated Kinase Erk1 Length = 382

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 69/145 (47%), Gaps = 13/145 (8%)
Query: 629 RFSENNLIGIGNGMEVAVKVFHQQYERALKSFED--ECEVRKRIRHRNL-----VKIISS 681
           RF   N+IGI + +  +      +  R +   +D  E ++ K ++ + L        +  
Sbjct: 97  RFRHENVIGIRDILRAST----LEAMRDVYIVQDLMETDLYKLLKSQQLSNDHICYFLYQ 152
Query: 682 SLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGE-DQLSKQTQTLATIG 740
            L  L + HS  ++H DLKPSN+L++      I DFG+A++   E D     T+ +AT  
Sbjct: 153 ILRGLKYIHSANVLHRDLKPSNLLINTTCDLKICDFGLARIADPEHDHTGFLTEXVATRW 212
Query: 741 YMAPEYGTKGRVSTRG-DVCSFGII 764
           Y APE     +  T+  D+ S G I
Sbjct: 213 YRAPEIMLNSKGYTKSIDIWSVGCI 237

>pdb|2EVA|A Chain A, Structural Basis For The Interaction Of Tak1 Kinase With Its Activating Protein Tab1 Length = 307

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/125 (32%), Positives = 52/125 (41%), Gaps = 6/125 (4%)
Query: 680 SSSLEYLHFGHSIPIIHCDLKPSNVLL-DEDMVAHISDFGIAKLLSGEDQLSKQTQTLAT 738
           S  + YLH      +IH DLKP N+LL     V  I DFG A      D  +  T    +
Sbjct: 112 SQGVAYLHSMQPKALIHRDLKPPNLLLVAGGTVLKICDFGTAC-----DIQTHMTNNKGS 166
Query: 739 IGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGETCTPVRESKYEVHPATTTIME 798
             +MAPE       S + DV S+GII     TR     E   P     + VH  T   + 
Sbjct: 167 AAWMAPEVFEGSNYSEKCDVFSWGIILWEVITRRKPFDEIGGPAFRIMWAVHNGTRPPLI 226
Query: 799 HPLPR 803
             LP+
Sbjct: 227 KNLPK 231

>pdb|2HK5|A Chain A, Hck Kinase In Complex With Lck Targetted Inhibitor Pg- 1009247 Length = 270

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Query: 695 IHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVST 754
           IH DL+ +N+L+   +V  I+DFG+A+++   +  +++      I + APE    G  + 
Sbjct: 133 IHRDLRAANILVSASLVCKIADFGLARVIEDNEYTAREGAKFP-IKWTAPEAINFGSFTI 191
Query: 755 RGDVCSFGII 764
           + DV SFGI+
Sbjct: 192 KSDVWSFGIL 201

>pdb|2JAV|A Chain A, Human Kinase With Pyrrole-Indolinone Ligand Length = 279

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 43/76 (56%), Gaps = 4/76 (5%)
Query: 689 GHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGT 748
           GH++  +H DLKP+NV LD      + DFG+A++L+ +   +K    + T  YM+PE   
Sbjct: 134 GHTV--LHRDLKPANVFLDGKQNVKLGDFGLARILNHDTSFAK--AFVGTPYYMSPEQMN 189
Query: 749 KGRVSTRGDVCSFGII 764
           +   + + D+ S G +
Sbjct: 190 RMSYNEKSDIWSLGCL 205

>pdb|2UZT|A Chain A, Pka Structures Of Akt, Indazole-Pyridine Inhibitors Length = 336

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 39/65 (60%), Gaps = 10/65 (15%)
Query: 682 SLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTL-ATIG 740
           + EYLH   S+ +I+ DLKP N+L+D+     ++DFG AK + G      +T TL  T  
Sbjct: 139 TFEYLH---SLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKG------RTWTLCGTPE 189
Query: 741 YMAPE 745
           Y+APE
Sbjct: 190 YLAPE 194

>pdb|3GP0|A Chain A, Crystal Structure Of Human Mitogen Activated Protein Kinase 11 (p38 Beta) In Complex With Nilotinib Length = 348

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/60 (46%), Positives = 34/60 (56%), Gaps = 5/60 (8%)
Query: 686 LHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPE 745
           L + HS  IIH DLKPSNV ++ED    I DFG+A+    E      T  +AT  Y APE
Sbjct: 136 LKYIHSAGIIHRDLKPSNVAVNEDCELRILDFGLARQADEE-----MTGYVATRWYRAPE 190

>pdb|2W5A|A Chain A, Human Nek2 Kinase Adp-Bound Length = 279

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 43/76 (56%), Gaps = 4/76 (5%)
Query: 689 GHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGT 748
           GH++  +H DLKP+NV LD      + DFG+A++L+ +   +K    + T  YM+PE   
Sbjct: 134 GHTV--LHRDLKPANVFLDGKQNVKLGDFGLARILNHDTSFAK--TFVGTPYYMSPEQMN 189
Query: 749 KGRVSTRGDVCSFGII 764
           +   + + D+ S G +
Sbjct: 190 RMSYNEKSDIWSLGCL 205

>pdb|1BI8|A Chain A, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From The Structures Cdk6-P19ink4d Inhibitor Complex Length = 326

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Query: 683 LEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYM 742
           L  L F HS  ++H DLKP N+L+       ++DFG+A++ S +  L   T  + T+ Y 
Sbjct: 130 LRGLDFLHSHRVVHRDLKPQNILVTSSGQIKLADFGLARIYSFQMAL---TSVVVTLWYR 186
Query: 743 APEYGTKGRVSTRGDVCSFGII 764
           APE   +   +T  D+ S G I
Sbjct: 187 APEVLLQSSYATPVDLWSVGCI 208

>pdb|3I5N|A Chain A, Crystal Structure Of C-Met With Triazolopyridazine Inhibitor 13 Length = 309

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 49/95 (51%), Gaps = 5/95 (5%)
Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLAT 738
           ++  ++YL    S   +H DL   N +LDE     ++DFG+A+ +  ++  S   +T A 
Sbjct: 141 VAKGMKYLA---SKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAK 197
Query: 739 --IGYMAPEYGTKGRVSTRGDVCSFGIISGGKETR 771
             + +MA E     + +T+ DV SFG++     TR
Sbjct: 198 LPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTR 232

>pdb|2W9F|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin Length = 306

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/149 (24%), Positives = 70/149 (46%), Gaps = 11/149 (7%)
Query: 623 LLRATDRFSENNLIGIGN-------GMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNL 675
           LLR  + F   N++ + +         E+ V +  +  ++ L+++ D+      +    +
Sbjct: 56  LLRRLEAFEHPNVVRLMDVCATSRTDREIKVTLVFEHVDQDLRTYLDKAPP-PGLPAETI 114
Query: 676 VKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQT 735
             ++   L  L F H+  I+H DLKP N+L+       ++DFG+A++ S +  L      
Sbjct: 115 KDLMRQFLRGLDFLHANCIVHRDLKPENILVTSGGTVKLADFGLARIYSYQMALFP---V 171
Query: 736 LATIGYMAPEYGTKGRVSTRGDVCSFGII 764
           + T+ Y APE   +   +T  D+ S G I
Sbjct: 172 VVTLWYRAPEVLLQSTYATPVDMWSVGCI 200

>pdb|2RFN|A Chain A, X-ray Structure Of C-met With Inhibitor. Length = 310

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 49/95 (51%), Gaps = 5/95 (5%)
Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLAT 738
           ++  ++YL    S   +H DL   N +LDE     ++DFG+A+ +  ++  S   +T A 
Sbjct: 142 VAKGMKYLA---SKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAK 198
Query: 739 --IGYMAPEYGTKGRVSTRGDVCSFGIISGGKETR 771
             + +MA E     + +T+ DV SFG++     TR
Sbjct: 199 LPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTR 233

>pdb|4GS6|A Chain A, Irreversible Inhibition Of Tak1 Kinase By 5z-7-oxozeaenol Length = 315

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/125 (32%), Positives = 52/125 (41%), Gaps = 6/125 (4%)
Query: 680 SSSLEYLHFGHSIPIIHCDLKPSNVLL-DEDMVAHISDFGIAKLLSGEDQLSKQTQTLAT 738
           S  + YLH      +IH DLKP N+LL     V  I DFG A      D  +  T    +
Sbjct: 113 SQGVAYLHSMQPKALIHRDLKPPNLLLVAGGTVLKICDFGTAC-----DIQTHMTNNKGS 167
Query: 739 IGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGETCTPVRESKYEVHPATTTIME 798
             +MAPE       S + DV S+GII     TR     E   P     + VH  T   + 
Sbjct: 168 AAWMAPEVFEGSNYSEKCDVFSWGIILWEVITRRKPFDEIGGPAFRIMWAVHNGTRPPLI 227
Query: 799 HPLPR 803
             LP+
Sbjct: 228 KNLPK 232

>pdb|2WGJ|A Chain A, X-Ray Structure Of Pf-02341066 Bound To The Kinase Domain Of C-Met Length = 306

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 49/95 (51%), Gaps = 5/95 (5%)
Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLAT 738
           ++  ++YL    S   +H DL   N +LDE     ++DFG+A+ +  ++  S   +T A 
Sbjct: 139 VAKGMKYLA---SKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAK 195
Query: 739 --IGYMAPEYGTKGRVSTRGDVCSFGIISGGKETR 771
             + +MA E     + +T+ DV SFG++     TR
Sbjct: 196 LPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTR 230

>pdb|2OO8|X Chain X, Synthesis, Structural Analysis, And Sar Studies Of Triazine Derivatives As Potent, Selective Tie-2 Inhibitors Length = 317

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 44/148 (29%), Positives = 64/148 (43%), Gaps = 28/148 (18%)
Query: 681 SSLEYLHFGHSIP----------IIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLS 730
           SS + LHF   +            IH DL   N+L+ E+ VA I+DFG+++   G++   
Sbjct: 130 SSQQLLHFAADVARGMDYLSQKQFIHRDLAARNILVGENYVAKIADFGLSR---GQEVYV 186
Query: 731 KQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII------SGGKETRSMTVGETCTPVRE 784
           K+T     + +MA E       +T  DV S+G++       GG     MT  E       
Sbjct: 187 KKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTCAEL------ 240
Query: 785 SKYEVHPATTTIMEHPLPRVGEVMDVDR 812
             YE  P     +E PL    EV D+ R
Sbjct: 241 --YEKLPQGYR-LEKPLNCDDEVYDLMR 265

>pdb|3GC9|A Chain A, The Structure Of P38beta C119s, C162s In Complex With A Dihydroquinazolinone Inhibitor Length = 370

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/60 (46%), Positives = 34/60 (56%), Gaps = 5/60 (8%)
Query: 686 LHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPE 745
           L + HS  IIH DLKPSNV ++ED    I DFG+A+    E      T  +AT  Y APE
Sbjct: 144 LKYIHSAGIIHRDLKPSNVAVNEDSELRILDFGLARQADEE-----MTGYVATRWYRAPE 198

>pdb|1JPA|A Chain A, Crystal Structure Of Unphosphorylated Ephb2 Receptor Tyrosine Kinase And Juxtamembrane Region Length = 312

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 53/95 (55%), Gaps = 10/95 (10%)
Query: 675 LVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQ 734
           +++ I++ ++YL     +  +H DL   N+L++ ++V  +SDFG+++ L  ED  S  T 
Sbjct: 140 MLRGIAAGMKYLA---DMNYVHRDLAARNILVNSNLVCKVSDFGLSRFL--EDDTSDPTY 194
Query: 735 TLA-----TIGYMAPEYGTKGRVSTRGDVCSFGII 764
           T A      I + APE     + ++  DV S+GI+
Sbjct: 195 TSALGGKIPIRWTAPEAIQYRKFTSASDVWSYGIV 229

>pdb|3GC8|A Chain A, The Structure Of P38beta C162s In Complex With A Dihydroquinazolinone Length = 370

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/60 (46%), Positives = 34/60 (56%), Gaps = 5/60 (8%)
Query: 686 LHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPE 745
           L + HS  IIH DLKPSNV ++ED    I DFG+A+    E      T  +AT  Y APE
Sbjct: 144 LKYIHSAGIIHRDLKPSNVAVNEDSELRILDFGLARQADEE-----MTGYVATRWYRAPE 198

>pdb|4FUX|A Chain A, Crystal Structure Of The Erk2 Complexed With E75 Length = 360

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/143 (28%), Positives = 67/143 (46%), Gaps = 9/143 (6%)
Query: 629 RFSENNLIGIGNGMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNL-----VKIISSSL 683
           RF   N+IGI +   +      Q  +  +     E ++ K ++ ++L        +   L
Sbjct: 77  RFRHENIIGINDI--IRAPTIEQMKDVYIVQDLMETDLYKLLKTQHLSNDHICYFLYQIL 134
Query: 684 EYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGE-DQLSKQTQTLATIGYM 742
             L + HS  ++H DLKPSN+LL+      I DFG+A++   + D     T+ +AT  Y 
Sbjct: 135 RGLKYIHSANVLHRDLKPSNLLLNTTXDLKICDFGLARVADPDHDHTGFLTEYVATRWYR 194
Query: 743 APEYGTKGRVSTRG-DVCSFGII 764
           APE     +  T+  D+ S G I
Sbjct: 195 APEIMLNSKGYTKSIDIWSVGCI 217

>pdb|3MN3|A Chain A, An Inhibited Conformation For The Protein Kinase Domain Of The Saccharomyces Cerevisiae Ampk Homolog Snf1 Length = 271

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/111 (32%), Positives = 54/111 (48%), Gaps = 7/111 (6%)
Query: 673 RNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQ 732
           R   + I S++EY H  H I  +H DLKP N+LLDE +   I+DFG++ +++  + L   
Sbjct: 106 RRFFQQIISAVEYCH-RHKI--VHRDLKPENLLLDEHLNVKIADFGLSNIMTDGNFLK-- 160
Query: 733 TQTLATIGYMAPEY-GTKGRVSTRGDVCSFGIISGGKETRSMTVGETCTPV 782
             +  +  Y APE    K       DV S G+I      R +   +   PV
Sbjct: 161 -TSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYVMLCRRLPFDDESIPV 210

>pdb|3F66|A Chain A, Human C-Met Kinase In Complex With Quinoxaline Inhibitor Length = 298

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 49/95 (51%), Gaps = 5/95 (5%)
Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLAT 738
           ++  ++YL    S   +H DL   N +LDE     ++DFG+A+ +  ++  S   +T A 
Sbjct: 137 VAKGMKYLA---SKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAK 193
Query: 739 --IGYMAPEYGTKGRVSTRGDVCSFGIISGGKETR 771
             + +MA E     + +T+ DV SFG++     TR
Sbjct: 194 LPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTR 228

>pdb|3Q6W|A Chain A, Structure Of Dually-phosphorylated Met Receptor Kinase In Complex With An Mk-2461 Analog With Specificity For The Activated Receptor Length = 307

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 49/95 (51%), Gaps = 5/95 (5%)
Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLAT 738
           ++  ++YL    S   +H DL   N +LDE     ++DFG+A+ +  ++  S   +T A 
Sbjct: 141 VAKGMKYLA---SKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEXXSVHNKTGAK 197
Query: 739 --IGYMAPEYGTKGRVSTRGDVCSFGIISGGKETR 771
             + +MA E     + +T+ DV SFG++     TR
Sbjct: 198 LPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTR 232

>pdb|3LQ8|A Chain A, Structure Of The Kinase Domain Of C-Met Bound To Xl880 (Gsk1 Length = 302

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 26/88 (29%), Positives = 47/88 (53%), Gaps = 5/88 (5%)
Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLAT 738
           ++  ++YL    S   +H DL   N +LDE     ++DFG+A+ +  ++  S   +T A 
Sbjct: 140 VAKGMKYLA---SKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAK 196
Query: 739 --IGYMAPEYGTKGRVSTRGDVCSFGII 764
             + +MA E     + +T+ DV SFG++
Sbjct: 197 LPVKWMALESLQTQKFTTKSDVWSFGVL 224

>pdb|1FOT|A Chain A, Structure Of The Unliganded Camp-Dependent Protein Kinase Catalytic Subunit From Saccharomyces Cerevisiae Length = 318

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 43/83 (51%), Gaps = 8/83 (9%)
Query: 682 SLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGY 741
           +LEYLH   S  II+ DLKP N+LLD++    I+DFG AK +              T  Y
Sbjct: 118 ALEYLH---SKDIIYRDLKPENILLDKNGHIKITDFGFAKYVP-----DVTYXLCGTPDY 169
Query: 742 MAPEYGTKGRVSTRGDVCSFGII 764
           +APE  +    +   D  SFGI+
Sbjct: 170 IAPEVVSTKPYNKSIDWWSFGIL 192

>pdb|1FVR|A Chain A, Tie2 Kinase Domain Length = 327

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 44/148 (29%), Positives = 64/148 (43%), Gaps = 28/148 (18%)
Query: 681 SSLEYLHFGHSIP----------IIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLS 730
           SS + LHF   +            IH DL   N+L+ E+ VA I+DFG+++   G++   
Sbjct: 140 SSQQLLHFAADVARGMDYLSQKQFIHRDLAARNILVGENYVAKIADFGLSR---GQEVYV 196
Query: 731 KQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII------SGGKETRSMTVGETCTPVRE 784
           K+T     + +MA E       +T  DV S+G++       GG     MT  E       
Sbjct: 197 KKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTCAEL------ 250
Query: 785 SKYEVHPATTTIMEHPLPRVGEVMDVDR 812
             YE  P     +E PL    EV D+ R
Sbjct: 251 --YEKLPQGYR-LEKPLNCDDEVYDLMR 275

>pdb|3NUP|A Chain A, Cdk6 (Monomeric) In Complex With Inhibitor Length = 307

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Query: 683 LEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYM 742
           L  L F HS  ++H DLKP N+L+       ++DFG+A++ S +  L   T  + T+ Y 
Sbjct: 130 LRGLDFLHSHRVVHRDLKPQNILVTSSGQIKLADFGLARIYSFQMAL---TSVVVTLWYR 186
Query: 743 APEYGTKGRVSTRGDVCSFGII 764
           APE   +   +T  D+ S G I
Sbjct: 187 APEVLLQSSYATPVDLWSVGCI 208

>pdb|2G15|A Chain A, Structural Characterization Of Autoinhibited C-Met Kinase Length = 318

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 49/95 (51%), Gaps = 5/95 (5%)
Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLAT 738
           ++  ++YL    S   +H DL   N +LDE     ++DFG+A+ +  ++  S   +T A 
Sbjct: 160 VAKGMKYLA---SKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAK 216
Query: 739 --IGYMAPEYGTKGRVSTRGDVCSFGIISGGKETR 771
             + +MA E     + +T+ DV SFG++     TR
Sbjct: 217 LPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTR 251

>pdb|3QYW|A Chain A, Crystal Structure Of Erk2 In Complex With An Inhibitor Length = 364

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/143 (28%), Positives = 67/143 (46%), Gaps = 9/143 (6%)
Query: 629 RFSENNLIGIGNGMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNL-----VKIISSSL 683
           RF   N+IGI +   +      Q  +  +     E ++ K ++ ++L        +   L
Sbjct: 81  RFRHENIIGINDI--IRAPTIEQMKDVYIVQDLMETDLYKLLKTQHLSNDHICYFLYQIL 138
Query: 684 EYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGE-DQLSKQTQTLATIGYM 742
             L + HS  ++H DLKPSN+LL+      I DFG+A++   + D     T+ +AT  Y 
Sbjct: 139 RGLKYIHSANVLHRDLKPSNLLLNTTXDLKICDFGLARVADPDHDHTGFLTEYVATRWYR 198
Query: 743 APEYGTKGRVSTRG-DVCSFGII 764
           APE     +  T+  D+ S G I
Sbjct: 199 APEIMLNSKGYTKSIDIWSVGCI 221

>pdb|3SA0|A Chain A, Complex Of Erk2 With Norathyriol Length = 360

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/143 (28%), Positives = 67/143 (46%), Gaps = 9/143 (6%)
Query: 629 RFSENNLIGIGNGMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNL-----VKIISSSL 683
           RF   N+IGI +   +      Q  +  +     E ++ K ++ ++L        +   L
Sbjct: 77  RFRHENIIGINDI--IRAPTIEQMKDVYIVQDLMETDLYKLLKTQHLSNDHICYFLYQIL 134
Query: 684 EYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGE-DQLSKQTQTLATIGYM 742
             L + HS  ++H DLKPSN+LL+      I DFG+A++   + D     T+ +AT  Y 
Sbjct: 135 RGLKYIHSANVLHRDLKPSNLLLNTTXDLKIXDFGLARVADPDHDHTGFLTEYVATRWYR 194
Query: 743 APEYGTKGRVSTRG-DVCSFGII 764
           APE     +  T+  D+ S G I
Sbjct: 195 APEIMLNSKGYTKSIDIWSVGCI 217

>pdb|1LUF|A Chain A, Crystal Structure Of The Musk Tyrosine Kinase: Insights Into Receptor Autoregulation Length = 343

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 36/71 (50%)
Query: 694 IIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVS 753
            +H DL   N L+ E+MV  I+DFG+++ +   D           I +M PE     R +
Sbjct: 195 FVHRDLATRNCLVGENMVVKIADFGLSRNIYSADYYKADGNDAIPIRWMPPESIFYNRYT 254
Query: 754 TRGDVCSFGII 764
           T  DV ++G++
Sbjct: 255 TESDVWAYGVV 265

>pdb|2Y94|A Chain A, Structure Of An Active Form Of Mammalian Ampk Length = 476

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 50/94 (53%), Gaps = 9/94 (9%)
Query: 673 RNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQ 732
           R L + I S ++Y H      ++H DLKP NVLLD  M A I+DFG++ ++S  + L   
Sbjct: 119 RRLFQQILSGVDYCH---RHMVVHRDLKPENVLLDAHMNAKIADFGLSNMMSDGEFLR-- 173
Query: 733 TQTLATIGYMAPEYGTKGRVST--RGDVCSFGII 764
             +  +  Y APE    GR+      D+ S G+I
Sbjct: 174 -XSCGSPNYAAPEV-ISGRLYAGPEVDIWSSGVI 205

>pdb|4GSB|A Chain A, Monoclinic Crystal Form Of The Apo-Erk2 Length = 364

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/143 (28%), Positives = 67/143 (46%), Gaps = 9/143 (6%)
Query: 629 RFSENNLIGIGNGMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNL-----VKIISSSL 683
           RF   N+IGI +   +      Q  +  +     E ++ K ++ ++L        +   L
Sbjct: 81  RFRHENIIGINDI--IRAPTIEQMKDVYIVQDLMETDLYKLLKTQHLSNDHICYFLYQIL 138
Query: 684 EYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGE-DQLSKQTQTLATIGYM 742
             L + HS  ++H DLKPSN+LL+      I DFG+A++   + D     T+ +AT  Y 
Sbjct: 139 RGLKYIHSANVLHRDLKPSNLLLNTTXDLKICDFGLARVADPDHDHTGFLTEYVATRWYR 198
Query: 743 APEYGTKGRVSTRG-DVCSFGII 764
           APE     +  T+  D+ S G I
Sbjct: 199 APEIMLNSKGYTKSIDIWSVGCI 221

>pdb|1JOW|B Chain B, Crystal Structure Of A Complex Of Human Cdk6 And A Viral Cyclin Length = 308

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Query: 683 LEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYM 742
           L  L F HS  ++H DLKP N+L+       ++DFG+A++ S +  L   T  + T+ Y 
Sbjct: 130 LRGLDFLHSHRVVHRDLKPQNILVTSSGQIKLADFGLARIYSFQMAL---TSVVVTLWYR 186
Query: 743 APEYGTKGRVSTRGDVCSFGII 764
           APE   +   +T  D+ S G I
Sbjct: 187 APEVLLQSSYATPVDLWSVGCI 208

>pdb|3DAE|A Chain A, Crystal Structure Of Phosphorylated Snf1 Kinase Domain Length = 283

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/111 (31%), Positives = 53/111 (47%), Gaps = 7/111 (6%)
Query: 673 RNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQ 732
           R   + I S++EY H      I+H DLKP N+LLDE +   I+DFG++ +++  + L   
Sbjct: 116 RRFFQQIISAVEYCH---RHKIVHRDLKPENLLLDEHLNVKIADFGLSNIMTDGNFLK-- 170
Query: 733 TQTLATIGYMAPEY-GTKGRVSTRGDVCSFGIISGGKETRSMTVGETCTPV 782
             +  +  Y APE    K       DV S G+I      R +   +   PV
Sbjct: 171 -TSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYVMLCRRLPFDDESIPV 220

>pdb|2FST|X Chain X, Mitogen Activated Protein Kinase P38alpha (d176a+f327l) Activating Mutant Length = 367

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 38/68 (55%), Gaps = 5/68 (7%)
Query: 678 IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLA 737
           +I   L  L + HS  IIH DLKPSN+ ++ED    I DFG+A+  + E      T  +A
Sbjct: 137 LIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTADE-----MTGYVA 191
Query: 738 TIGYMAPE 745
           T  Y APE
Sbjct: 192 TRWYRAPE 199

>pdb|4FV7|A Chain A, Crystal Structure Of The Erk2 Complexed With E94 Length = 360

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/143 (28%), Positives = 67/143 (46%), Gaps = 9/143 (6%)
Query: 629 RFSENNLIGIGNGMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNL-----VKIISSSL 683
           RF   N+IGI +   +      Q  +  +     E ++ K ++ ++L        +   L
Sbjct: 77  RFRHENIIGINDI--IRAPTIEQMKDVYIVQDLMETDLYKLLKTQHLSNDHICYFLYQIL 134
Query: 684 EYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGE-DQLSKQTQTLATIGYM 742
             L + HS  ++H DLKPSN+LL+      I DFG+A++   + D     T+ +AT  Y 
Sbjct: 135 RGLKYIHSANVLHRDLKPSNLLLNTTXDLKICDFGLARVADPDHDHTGFLTEYVATRWYR 194
Query: 743 APEYGTKGRVSTRG-DVCSFGII 764
           APE     +  T+  D+ S G I
Sbjct: 195 APEIMLNSKGYTKSIDIWSVGCI 217

>pdb|3E92|A Chain A, Crystal Structure Of P38 Kinase In Complex With A Biaryl Amide Inhibitor Length = 371

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 678 IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLA 737
           +I   L  L + HS  IIH DLKPSN+ ++ED    I DFG+A+    E      T  +A
Sbjct: 141 LIYQILRGLKYIHSADIIHRDLKPSNLAVNEDXELKILDFGLARHTDDE-----MTGYVA 195
Query: 738 TIGYMAPE 745
           T  Y APE
Sbjct: 196 TRWYRAPE 203

>pdb|3D83|A Chain A, Crystal Structure Of P38 Kinase In Complex With A Biphenyl Amide Inhibitor Length = 360

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 678 IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLA 737
           +I   L  L + HS  IIH DLKPSN+ ++ED    I DFG+A+    E      T  +A
Sbjct: 130 LIYQILRGLKYIHSADIIHRDLKPSNLAVNEDXELKILDFGLARHTDDE-----MTGYVA 184
Query: 738 TIGYMAPE 745
           T  Y APE
Sbjct: 185 TRWYRAPE 192

>pdb|2FH9|A Chain A, Structure And Dimerization Of The Kinase Domain From Yeast Snf1 Length = 274

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/111 (32%), Positives = 54/111 (48%), Gaps = 7/111 (6%)
Query: 673 RNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQ 732
           R   + I S++EY H  H I  +H DLKP N+LLDE +   I+DFG++ +++  + L   
Sbjct: 110 RRFFQQIISAVEYCH-RHKI--VHRDLKPENLLLDEHLNVKIADFGLSNIMTDGNFLK-- 164
Query: 733 TQTLATIGYMAPEY-GTKGRVSTRGDVCSFGIISGGKETRSMTVGETCTPV 782
             +  +  Y APE    K       DV S G+I      R +   +   PV
Sbjct: 165 -TSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYVMLCRRLPFDDESIPV 214

>pdb|2FSL|X Chain X, Mitogen Activated Protein Kinase P38alpha (D176a+f327s) Activating Mutant Form-A Length = 367

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 38/68 (55%), Gaps = 5/68 (7%)
Query: 678 IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLA 737
           +I   L  L + HS  IIH DLKPSN+ ++ED    I DFG+A+  + E      T  +A
Sbjct: 137 LIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTADE-----MTGYVA 191
Query: 738 TIGYMAPE 745
           T  Y APE
Sbjct: 192 TRWYRAPE 199

>pdb|3O71|A Chain A, Crystal Structure Of Erk2DCC PEPTIDE COMPLEX Length = 358

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/143 (28%), Positives = 67/143 (46%), Gaps = 9/143 (6%)
Query: 629 RFSENNLIGIGNGMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNL-----VKIISSSL 683
           RF   N+IGI +   +      Q  +  +     E ++ K ++ ++L        +   L
Sbjct: 75  RFRHENIIGINDI--IRAPTIEQMKDVYIVQDLMETDLYKLLKTQHLSNDHICYFLYQIL 132
Query: 684 EYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGE-DQLSKQTQTLATIGYM 742
             L + HS  ++H DLKPSN+LL+      I DFG+A++   + D     T+ +AT  Y 
Sbjct: 133 RGLKYIHSANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYR 192
Query: 743 APEYGTKGRVSTRG-DVCSFGII 764
           APE     +  T+  D+ S G I
Sbjct: 193 APEIMLNSKGYTKSIDIWSVGCI 215

>pdb|2FSO|X Chain X, Mitogen Activated Protein Kinase P38alpha (D176a) Activating Mutant Length = 367

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 38/68 (55%), Gaps = 5/68 (7%)
Query: 678 IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLA 737
           +I   L  L + HS  IIH DLKPSN+ ++ED    I DFG+A+  + E      T  +A
Sbjct: 137 LIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTADE-----MTGYVA 191
Query: 738 TIGYMAPE 745
           T  Y APE
Sbjct: 192 TRWYRAPE 199

>pdb|4FV6|A Chain A, Crystal Structure Of The Erk2 Complexed With E57 Length = 360

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/143 (28%), Positives = 67/143 (46%), Gaps = 9/143 (6%)
Query: 629 RFSENNLIGIGNGMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNL-----VKIISSSL 683
           RF   N+IGI +   +      Q  +  +     E ++ K ++ ++L        +   L
Sbjct: 77  RFRHENIIGINDI--IRAPTIEQMKDVYIVQDLMETDLYKLLKTQHLSNDHICYFLYQIL 134
Query: 684 EYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGE-DQLSKQTQTLATIGYM 742
             L + HS  ++H DLKPSN+LL+      I DFG+A++   + D     T+ +AT  Y 
Sbjct: 135 RGLKYIHSANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYR 194
Query: 743 APEYGTKGRVSTRG-DVCSFGII 764
           APE     +  T+  D+ S G I
Sbjct: 195 APEIMLNSKGYTKSIDIWSVGCI 217

>pdb|3HYH|A Chain A, Crystal Structure Of The Protein Kinase Domain Of Yeast Amp-Activated Protein Kinase Snf1 Length = 275

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/111 (31%), Positives = 53/111 (47%), Gaps = 7/111 (6%)
Query: 673 RNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQ 732
           R   + I S++EY H      I+H DLKP N+LLDE +   I+DFG++ +++  + L   
Sbjct: 115 RRFFQQIISAVEYCH---RHKIVHRDLKPENLLLDEHLNVKIADFGLSNIMTDGNFLK-- 169
Query: 733 TQTLATIGYMAPEY-GTKGRVSTRGDVCSFGIISGGKETRSMTVGETCTPV 782
             +  +  Y APE    K       DV S G+I      R +   +   PV
Sbjct: 170 -TSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYVMLCRRLPFDDESIPV 219

>pdb|1GOL|A Chain A, Coordinates Of Rat Map Kinase Erk2 With An Arginine Mutation At Position 52 Length = 364

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 41/143 (28%), Positives = 67/143 (46%), Gaps = 9/143 (6%)
Query: 629 RFSENNLIGIGNGMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNL-----VKIISSSL 683
           RF   N+IGI +   +      Q  +  +     E ++ K ++ ++L        +   L
Sbjct: 81  RFRHENIIGINDI--IRAPTIEQMKDVYIVQDLMETDLYKLLKTQHLSNDHICYFLYQIL 138
Query: 684 EYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGE-DQLSKQTQTLATIGYM 742
             L + HS  ++H DLKPSN+LL+      I DFG+A++   + D     T+ +AT  Y 
Sbjct: 139 RGLKYIHSANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYR 198
Query: 743 APEYGTKGRVSTRG-DVCSFGII 764
           APE     +  T+  D+ S G I
Sbjct: 199 APEIMLNSKGYTKSIDIWSVGCI 221

>pdb|3K54|A Chain A, Structures Of Human Bruton's Tyrosine Kinase In Active And Inactive Conformations Suggests A Mechanism Of Activation For Tec Family Kinases Length = 283

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 23/100 (23%), Positives = 53/100 (53%), Gaps = 1/100 (1%)
Query: 665 EVRKRIRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLS 724
           E+R R + + L+++     E + +  S   +H DL   N L+++  V  +SDFG+++ + 
Sbjct: 112 EMRHRFQTQQLLEMCKDVCEAMEYLESKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVL 171
Query: 725 GEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
            +D+ +    +   + +  PE     + S++ D+ +FG++
Sbjct: 172 -DDEETSSVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVL 210

>pdb|2GU8|A Chain A, Discovery Of 2-pyrimidyl-5-amidothiophenes As Novel And Potent Inhibitors For Akt: Synthesis And Sar Studies Length = 337

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 38/65 (58%), Gaps = 10/65 (15%)
Query: 682 SLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTL-ATIG 740
           + EYLH   S+ +I+ DLKP N+L+DE     ++DFG AK + G      +T  L  T  
Sbjct: 140 TFEYLH---SLDLIYRDLKPENLLIDEQGYIQVTDFGFAKRVKG------RTWXLCGTPE 190
Query: 741 YMAPE 745
           Y+APE
Sbjct: 191 YLAPE 195

>pdb|1WZY|A Chain A, Crystal Structure Of Human Erk2 Complexed With A Pyrazolopyridazine Derivative Length = 368

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 41/143 (28%), Positives = 67/143 (46%), Gaps = 9/143 (6%)
Query: 629 RFSENNLIGIGNGMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNL-----VKIISSSL 683
           RF   N+IGI +   +      Q  +  +     E ++ K ++ ++L        +   L
Sbjct: 85  RFRHENIIGINDI--IRAPTIEQMKDVYIVQDLMETDLYKLLKTQHLSNDHICYFLYQIL 142
Query: 684 EYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGE-DQLSKQTQTLATIGYM 742
             L + HS  ++H DLKPSN+LL+      I DFG+A++   + D     T+ +AT  Y 
Sbjct: 143 RGLKYIHSANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYR 202
Query: 743 APEYGTKGRVSTRG-DVCSFGII 764
           APE     +  T+  D+ S G I
Sbjct: 203 APEIMLNSKGYTKSIDIWSVGCI 225

>pdb|2BAL|A Chain A, P38alpha Map Kinase Bound To Pyrazoloamine Length = 365

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 678 IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLA 737
           +I   L  L + HS  IIH DLKPSN+ ++ED    I DFG+A+    E      T  +A
Sbjct: 135 LIYQILRGLKYIHSADIIHRDLKPSNLAVNEDXELKILDFGLARHTDDE-----MTGYVA 189
Query: 738 TIGYMAPE 745
           T  Y APE
Sbjct: 190 TRWYRAPE 197

>pdb|2BAQ|A Chain A, P38alpha Bound To Ro3201195 Length = 365

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 678 IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLA 737
           +I   L  L + HS  IIH DLKPSN+ ++ED    I DFG+A+    E      T  +A
Sbjct: 135 LIYQILRGLKYIHSADIIHRDLKPSNLAVNEDXELKILDFGLARHTDDE-----MTGYVA 189
Query: 738 TIGYMAPE 745
           T  Y APE
Sbjct: 190 TRWYRAPE 197

>pdb|1TVO|A Chain A, The Structure Of Erk2 In Complex With A Small Molecule Inhibitor Length = 368

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 41/143 (28%), Positives = 67/143 (46%), Gaps = 9/143 (6%)
Query: 629 RFSENNLIGIGNGMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNL-----VKIISSSL 683
           RF   N+IGI +   +      Q  +  +     E ++ K ++ ++L        +   L
Sbjct: 77  RFRHENIIGINDI--IRAPTIEQMKDVYIVQDLMETDLYKLLKTQHLSNDHICYFLYQIL 134
Query: 684 EYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGE-DQLSKQTQTLATIGYM 742
             L + HS  ++H DLKPSN+LL+      I DFG+A++   + D     T+ +AT  Y 
Sbjct: 135 RGLKYIHSANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYR 194
Query: 743 APEYGTKGRVSTRG-DVCSFGII 764
           APE     +  T+  D+ S G I
Sbjct: 195 APEIMLNSKGYTKSIDIWSVGCI 217

>pdb|3ZU7|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 365

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 41/143 (28%), Positives = 67/143 (46%), Gaps = 9/143 (6%)
Query: 629 RFSENNLIGIGNGMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNL-----VKIISSSL 683
           RF   N+IGI +   +      Q  +  +     E ++ K ++ ++L        +   L
Sbjct: 82  RFRHENIIGINDI--IRAPTIEQMKDVYIVQDLMETDLYKLLKTQHLSNDHICYFLYQIL 139
Query: 684 EYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGE-DQLSKQTQTLATIGYM 742
             L + HS  ++H DLKPSN+LL+      I DFG+A++   + D     T+ +AT  Y 
Sbjct: 140 RGLKYIHSANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYR 199
Query: 743 APEYGTKGRVSTRG-DVCSFGII 764
           APE     +  T+  D+ S G I
Sbjct: 200 APEIMLNSKGYTKSIDIWSVGCI 222

>pdb|2Z7L|A Chain A, Unphosphorylated Mitogen Activated Protein Kinase Erk2 In Complex With (4-{[5-Carbamoyl-4-(3-Methylanilino)pyrimidin 2-Yl]amino}phenyl)acetic Acid Length = 366

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 41/143 (28%), Positives = 67/143 (46%), Gaps = 9/143 (6%)
Query: 629 RFSENNLIGIGNGMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNL-----VKIISSSL 683
           RF   N+IGI +   +      Q  +  +     E ++ K ++ ++L        +   L
Sbjct: 83  RFRHENIIGINDI--IRAPTIEQMKDVYIVQDLMETDLYKLLKTQHLSNDHICYFLYQIL 140
Query: 684 EYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGE-DQLSKQTQTLATIGYM 742
             L + HS  ++H DLKPSN+LL+      I DFG+A++   + D     T+ +AT  Y 
Sbjct: 141 RGLKYIHSANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYR 200
Query: 743 APEYGTKGRVSTRG-DVCSFGII 764
           APE     +  T+  D+ S G I
Sbjct: 201 APEIMLNSKGYTKSIDIWSVGCI 223

>pdb|3C9W|A Chain A, Crystal Structure Of Erk-2 With Hypothemycin Covalently Bound Length = 357

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 41/143 (28%), Positives = 67/143 (46%), Gaps = 9/143 (6%)
Query: 629 RFSENNLIGIGNGMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNL-----VKIISSSL 683
           RF   N+IGI +   +      Q  +  +     E ++ K ++ ++L        +   L
Sbjct: 74  RFRHENIIGINDI--IRAPTIEQMKDVYIVQDLMETDLYKLLKTQHLSNDHICYFLYQIL 131
Query: 684 EYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGE-DQLSKQTQTLATIGYM 742
             L + HS  ++H DLKPSN+LL+      I DFG+A++   + D     T+ +AT  Y 
Sbjct: 132 RGLKYIHSANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYR 191
Query: 743 APEYGTKGRVSTRG-DVCSFGII 764
           APE     +  T+  D+ S G I
Sbjct: 192 APEIMLNSKGYTKSIDIWSVGCI 214

>pdb|2FYS|B Chain B, Crystal Structure Of Erk2 Complex With Kim Peptide Derived From Mkp3 Length = 364

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 41/143 (28%), Positives = 67/143 (46%), Gaps = 9/143 (6%)
Query: 629 RFSENNLIGIGNGMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNL-----VKIISSSL 683
           RF   N+IGI +   +      Q  +  +     E ++ K ++ ++L        +   L
Sbjct: 81  RFRHENIIGINDI--IRAPTIEQMKDVYIVQDLMETDLYKLLKTQHLSNDHICYFLYQIL 138
Query: 684 EYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGE-DQLSKQTQTLATIGYM 742
             L + HS  ++H DLKPSN+LL+      I DFG+A++   + D     T+ +AT  Y 
Sbjct: 139 RGLKYIHSANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYR 198
Query: 743 APEYGTKGRVSTRG-DVCSFGII 764
           APE     +  T+  D+ S G I
Sbjct: 199 APEIMLNSKGYTKSIDIWSVGCI 221

>pdb|2Y9Q|A Chain A, Crystal Structure Of Human Erk2 Complexed With A Mapk Docking Peptide Length = 362

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 41/143 (28%), Positives = 67/143 (46%), Gaps = 9/143 (6%)
Query: 629 RFSENNLIGIGNGMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNL-----VKIISSSL 683
           RF   N+IGI +   +      Q  +  +     E ++ K ++ ++L        +   L
Sbjct: 79  RFRHENIIGINDI--IRAPTIEQMKDVYIVQDLMETDLYKLLKTQHLSNDHICYFLYQIL 136
Query: 684 EYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGE-DQLSKQTQTLATIGYM 742
             L + HS  ++H DLKPSN+LL+      I DFG+A++   + D     T+ +AT  Y 
Sbjct: 137 RGLKYIHSANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYR 196
Query: 743 APEYGTKGRVSTRG-DVCSFGII 764
           APE     +  T+  D+ S G I
Sbjct: 197 APEIMLNSKGYTKSIDIWSVGCI 219

>pdb|3Q5I|A Chain A, Crystal Structure Of Pbanka_031420 Length = 504

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/106 (34%), Positives = 57/106 (53%), Gaps = 16/106 (15%)
Query: 662 DECEVRKRIRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDED---MVAHISDFG 718
           DEC+        N++K I S + YLH  H+I  +H D+KP N+LL+     +   I DFG
Sbjct: 144 DECDAA------NIMKQILSGICYLH-KHNI--VHRDIKPENILLENKNSLLNIKIVDFG 194
Query: 719 IAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
           ++   S + +L  +   L T  Y+APE   K + + + DV S G+I
Sbjct: 195 LSSFFSKDYKLRDR---LGTAYYIAPEV-LKKKYNEKCDVWSCGVI 236

>pdb|2OJG|A Chain A, Crystal Structure Of Erk2 In Complex With N,n-dimethyl-4-(4- Phenyl-1h-pyrazol-3-yl)-1h-pyrrole-2-carboxamide Length = 380

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 41/143 (28%), Positives = 67/143 (46%), Gaps = 9/143 (6%)
Query: 629 RFSENNLIGIGNGMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNL-----VKIISSSL 683
           RF   N+IGI +   +      Q  +  +     E ++ K ++ ++L        +   L
Sbjct: 97  RFRHENIIGINDI--IRAPTIEQMKDVYIVQDLMETDLYKLLKTQHLSNDHICYFLYQIL 154
Query: 684 EYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGE-DQLSKQTQTLATIGYM 742
             L + HS  ++H DLKPSN+LL+      I DFG+A++   + D     T+ +AT  Y 
Sbjct: 155 RGLKYIHSANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYR 214
Query: 743 APEYGTKGRVSTRG-DVCSFGII 764
           APE     +  T+  D+ S G I
Sbjct: 215 APEIMLNSKGYTKSIDIWSVGCI 237

>pdb|3ALN|A Chain A, Crystal Structure Of Human Non-Phosphorylated Mkk4 Kinase Domain Complexed With Amp-Pnp Length = 327

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 31/81 (38%), Positives = 42/81 (51%), Gaps = 7/81 (8%)
Query: 687 HFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEY 746
           H   ++ IIH D+KPSN+LLD      + DFGI+  L   D ++K T+      YMAPE 
Sbjct: 140 HLKENLKIIHRDIKPSNILLDRSGNIKLCDFGISGQLV--DSIAK-TRDAGCRPYMAPER 196
Query: 747 ----GTKGRVSTRGDVCSFGI 763
                ++     R DV S GI
Sbjct: 197 IDPSASRQGYDVRSDVWSLGI 217

>pdb|1PME|A Chain A, Structure Of Penta Mutant Human Erk2 Map Kinase Complexed With A Specific Inhibitor Of Human P38 Map Kinase Length = 380

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 41/143 (28%), Positives = 67/143 (46%), Gaps = 9/143 (6%)
Query: 629 RFSENNLIGIGNGMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNL-----VKIISSSL 683
           RF   N+IGI +   +      Q  +  L +     ++ K ++ ++L        +   L
Sbjct: 97  RFRHENIIGINDI--IRAPTIEQMKDVYLVTHLMGADLYKLLKTQHLSNDHICYFLYQIL 154
Query: 684 EYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGE-DQLSKQTQTLATIGYM 742
             L + HS  ++H DLKPSN+LL+      I DFG+A++   + D     T+ +AT  Y 
Sbjct: 155 RGLKYIHSANVLHRDLKPSNLLLNTTXDLKICDFGLARVADPDHDHTGFLTEYVATRWYR 214
Query: 743 APEYGTKGRVSTRG-DVCSFGII 764
           APE     +  T+  D+ S G I
Sbjct: 215 APEIMLNSKGYTKSIDIWSVGCI 237

>pdb|4DFY|A Chain A, Crystal Structure Of R194a Mutant Of Camp-Dependent Protein Kinase With Unphosphorylated Activation Loop Length = 371

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 38/65 (58%), Gaps = 10/65 (15%)
Query: 682 SLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTL-ATIG 740
           + EYLH   S+ +I+ DLKP N+L+D+     ++DFG AK + G       T TL  T  
Sbjct: 174 TFEYLH---SLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKG------ATWTLCGTPE 224
Query: 741 YMAPE 745
           Y+APE
Sbjct: 225 YLAPE 229

>pdb|3R63|A Chain A, Structure Of Erk2 (Spe) Mutant (S246e) Length = 358

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 41/143 (28%), Positives = 67/143 (46%), Gaps = 9/143 (6%)
Query: 629 RFSENNLIGIGNGMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNL-----VKIISSSL 683
           RF   N+IGI +   +      Q  +  +     E ++ K ++ ++L        +   L
Sbjct: 75  RFRHENIIGINDI--IRAPTIEQMKDVYIVQDLMETDLYKLLKTQHLSNDHICYFLYQIL 132
Query: 684 EYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGE-DQLSKQTQTLATIGYM 742
             L + HS  ++H DLKPSN+LL+      I DFG+A++   + D     T+ +AT  Y 
Sbjct: 133 RGLKYIHSANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYR 192
Query: 743 APEYGTKGRVSTRG-DVCSFGII 764
           APE     +  T+  D+ S G I
Sbjct: 193 APEIMLNSKGYTKSIDIWSVGCI 215

>pdb|2QOK|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f:s768a Triple Mutant Length = 373

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 25/91 (27%), Positives = 53/91 (58%), Gaps = 4/91 (4%)
Query: 675 LVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQ 734
           +++ I+S ++YL     +  +H DL   N+L++ ++V  +SDFG+A++L  + + +  T+
Sbjct: 152 MLRGIASGMKYLS---DMGYVHRDLAARNILINSNLVCKVSDFGLARVLEDDPEAAYTTR 208
Query: 735 TLAT-IGYMAPEYGTKGRVSTRGDVCSFGII 764
                I + +PE     + ++  DV S+GI+
Sbjct: 209 GGKIPIRWTSPEAIAYRKFTSASDVWSYGIV 239

>pdb|1GZ8|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The Inhibitor 2-Amino-6-(3'-Methyl-2'-Oxo)butoxypurine Length = 299

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/91 (35%), Positives = 47/91 (51%), Gaps = 5/91 (5%)
Query: 683 LEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYM 742
           L+ L F HS  ++H DLKP N+L++ +    ++DFG+A+       +   T  + T+ Y 
Sbjct: 113 LQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVP--VRTYTHEVVTLWYR 170
Query: 743 APE--YGTKGRVSTRGDVCSFGIISGGKETR 771
           APE   G K   ST  D+ S G I     TR
Sbjct: 171 APEILLGXK-YYSTAVDIWSLGCIFAEMVTR 200

>pdb|3NNX|A Chain A, Crystal Structure Of Phosphorylated P38 Alpha In Complex With Dp802 Length = 354

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 678 IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLA 737
           +I   L  L + HS  IIH DLKPSN+ ++ED    I DFG+A+    E      T  +A
Sbjct: 130 LIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDE-----MTGXVA 184
Query: 738 TIGYMAPE 745
           T  Y APE
Sbjct: 185 TRWYRAPE 192

>pdb|3LM0|A Chain A, Crystal Structure Of Human SerineTHREONINE KINASE 17B (STK17B) Length = 327

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 30/106 (28%), Positives = 57/106 (53%), Gaps = 10/106 (9%)
Query: 665 EVRKRIRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDE-----DMVAHISDFGI 719
           E+ + +   +++++I   LE +++ H   I+H DLKP N+LL       D+   I DFG+
Sbjct: 123 ELAEMVSENDVIRLIKQILEGVYYLHQNNIVHLDLKPQNILLSSIYPLGDI--KIVDFGM 180
Query: 720 AKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIIS 765
           ++ +    +L    + + T  Y+APE      ++T  D+ + GII+
Sbjct: 181 SRKIGHACELR---EIMGTPEYLAPEILNYDPITTATDMWNIGIIA 223

>pdb|3PIX|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With 2-Isopropyl-7- (4-Methyl-Piperazin-1-Yl)-4-(5-Methyl-2h-Pyrazol-3- Ylamino)-2h- Phthalazin-1-One Length = 274

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 23/100 (23%), Positives = 53/100 (53%), Gaps = 1/100 (1%)
Query: 665 EVRKRIRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLS 724
           E+R R + + L+++     E + +  S   +H DL   N L+++  V  +SDFG+++ + 
Sbjct: 103 EMRHRFQTQQLLEMCKDVCEAMEYLESKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVL 162
Query: 725 GEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
            +D+ +    +   + +  PE     + S++ D+ +FG++
Sbjct: 163 -DDEYTSSVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVL 201

>pdb|3ODZ|X Chain X, Crystal Structure Of P38alpha Y323r Active Mutant Length = 360

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 678 IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLA 737
           +I   L  L + HS  IIH DLKPSN+ ++ED    I DFG+A+    E      T  +A
Sbjct: 130 LIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDE-----MTGYVA 184
Query: 738 TIGYMAPE 745
           T  Y APE
Sbjct: 185 TRWYRAPE 192

>pdb|3P08|A Chain A, Crystal Structure Of The Human Btk Kinase Domain Length = 267

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 23/100 (23%), Positives = 53/100 (53%), Gaps = 1/100 (1%)
Query: 665 EVRKRIRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLS 724
           E+R R + + L+++     E + +  S   +H DL   N L+++  V  +SDFG+++ + 
Sbjct: 96  EMRHRFQTQQLLEMCKDVCEAMEYLESKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVL 155
Query: 725 GEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
            +D+ +    +   + +  PE     + S++ D+ +FG++
Sbjct: 156 -DDEYTSSVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVL 194

>pdb|3OCS|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase In Complex With Inhibitor Cgi1746 Length = 271

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 23/100 (23%), Positives = 53/100 (53%), Gaps = 1/100 (1%)
Query: 665 EVRKRIRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLS 724
           E+R R + + L+++     E + +  S   +H DL   N L+++  V  +SDFG+++ + 
Sbjct: 97  EMRHRFQTQQLLEMCKDVCEAMEYLESKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVL 156
Query: 725 GEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
            +D+ +    +   + +  PE     + S++ D+ +FG++
Sbjct: 157 -DDEYTSSVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVL 195

>pdb|2GPH|A Chain A, Docking Motif Interactions In The Map Kinase Erk2 Length = 364

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 41/143 (28%), Positives = 67/143 (46%), Gaps = 9/143 (6%)
Query: 629 RFSENNLIGIGNGMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNL-----VKIISSSL 683
           RF   N+IGI +   +      Q  +  +     E ++ K ++ ++L        +   L
Sbjct: 81  RFRHENIIGINDI--IRAPTIEQMKDVYIVQDLMETDLYKLLKCQHLSNDHICYFLYQIL 138
Query: 684 EYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGE-DQLSKQTQTLATIGYM 742
             L + HS  ++H DLKPSN+LL+      I DFG+A++   + D     T+ +AT  Y 
Sbjct: 139 RGLKYIHSANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYR 198
Query: 743 APEYGTKGRVSTRG-DVCSFGII 764
           APE     +  T+  D+ S G I
Sbjct: 199 APEIMLNSKGYTKSIDIWSVGCI 221

>pdb|1K2P|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase Domain Length = 263

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 23/100 (23%), Positives = 53/100 (53%), Gaps = 1/100 (1%)
Query: 665 EVRKRIRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLS 724
           E+R R + + L+++     E + +  S   +H DL   N L+++  V  +SDFG+++ + 
Sbjct: 92  EMRHRFQTQQLLEMCKDVCEAMEYLESKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVL 151
Query: 725 GEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
            +D+ +    +   + +  PE     + S++ D+ +FG++
Sbjct: 152 -DDEYTSSVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVL 190

>pdb|4FT3|A Chain A, Crystal Structure Of The Chk1 Length = 279

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 688 FGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYG 747
           + H I I H D+KP N+LLDE     ISDFG+A +    ++     +   T+ Y+APE  
Sbjct: 119 YLHGIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMXGTLPYVAPELL 178
Query: 748 TKGRVSTRG-DVCSFGII 764
            +        DV S GI+
Sbjct: 179 KRREFHAEPVDVWSCGIV 196

>pdb|4FSZ|A Chain A, Crystal Structure Of The Chk1 Length = 279

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 688 FGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYG 747
           + H I I H D+KP N+LLDE     ISDFG+A +    ++     +   T+ Y+APE  
Sbjct: 119 YLHGIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMXGTLPYVAPELL 178
Query: 748 TKGRVSTRG-DVCSFGII 764
            +        DV S GI+
Sbjct: 179 KRREFHAEPVDVWSCGIV 196

>pdb|3S95|A Chain A, Crystal Structure Of The Human Limk1 Kinase Domain In Complex With Staurosporine Length = 310

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 56/120 (46%), Gaps = 18/120 (15%)
Query: 657 LKSFEDECEVRKRIRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISD 716
           +KS + +    +R+   +  K I+S + YLH   S+ IIH DL   N L+ E+    ++D
Sbjct: 98  IKSMDSQYPWSQRV---SFAKDIASGMAYLH---SMNIIHRDLNSHNCLVRENKNVVVAD 151
Query: 717 FGIAKLLSGED------------QLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
           FG+A+L+  E                K+   +    +MAPE         + DV SFGI+
Sbjct: 152 FGLARLMVDEKTQPEGLRSLKKPDRKKRYTVVGNPYWMAPEMINGRSYDEKVDVFSFGIV 211

>pdb|3OD6|X Chain X, Crystal Structure Of P38alpha Y323t Active Mutant Length = 360

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 678 IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLA 737
           +I   L  L + HS  IIH DLKPSN+ ++ED    I DFG+A+    E      T  +A
Sbjct: 130 LIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDE-----MTGYVA 184
Query: 738 TIGYMAPE 745
           T  Y APE
Sbjct: 185 TRWYRAPE 192

>pdb|3ODY|X Chain X, Crystal Structure Of P38alpha Y323q Active Mutant Length = 360

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 678 IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLA 737
           +I   L  L + HS  IIH DLKPSN+ ++ED    I DFG+A+    E      T  +A
Sbjct: 130 LIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDE-----MTGYVA 184
Query: 738 TIGYMAPE 745
           T  Y APE
Sbjct: 185 TRWYRAPE 192

>pdb|1OIT|A Chain A, Imidazopyridines: A Potent And Selective Class Of Cyclin-dependent Kinase Inhibitors Identified Through Structure-based Hybridisation Length = 299

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 32/91 (35%), Positives = 47/91 (51%), Gaps = 5/91 (5%)
Query: 683 LEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYM 742
           L+ L F HS  ++H DLKP N+L++ +    ++DFG+A+       +   T  + T+ Y 
Sbjct: 113 LQGLSFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVP--VRTYTHEVVTLWYR 170
Query: 743 APE--YGTKGRVSTRGDVCSFGIISGGKETR 771
           APE   G K   ST  D+ S G I     TR
Sbjct: 171 APEILLGCK-YYSTAVDIWSLGCIFAEMVTR 200

>pdb|3NNU|A Chain A, Crystal Structure Of P38 Alpha In Complex With Dp1376 Length = 354

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 678 IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLA 737
           +I   L  L + HS  IIH DLKPSN+ ++ED    I DFG+A+    E      T  +A
Sbjct: 130 LIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDE-----MTGYVA 184
Query: 738 TIGYMAPE 745
           T  Y APE
Sbjct: 185 TRWYRAPE 192

>pdb|3NZ0|A Chain A, Non-Phosphorylated Tyk2 Kinase With Cmp6 Length = 302

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 4/90 (4%)
Query: 675 LVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLL-SGEDQLSKQT 733
             + I   + YLH  H    IH +L   NVLLD D +  I DFG+AK +  G +    + 
Sbjct: 122 FAQQICEGMAYLHAQH---YIHRNLAARNVLLDNDRLVKIGDFGLAKAVPEGHEYYRVRE 178
Query: 734 QTLATIGYMAPEYGTKGRVSTRGDVCSFGI 763
              + + + APE   + +     DV SFG+
Sbjct: 179 DGDSPVFWYAPECLKEYKFYYASDVWSFGV 208

>pdb|4FSW|A Chain A, Crystal Structure Of The Chk1 Length = 279

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 688 FGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYG 747
           + H I I H D+KP N+LLDE     ISDFG+A +    ++     +   T+ Y+APE  
Sbjct: 119 YLHGIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMXGTLPYVAPELL 178
Query: 748 TKGRVSTRG-DVCSFGII 764
            +        DV S GI+
Sbjct: 179 KRREFHAEPVDVWSCGIV 196

>pdb|2YDJ|A Chain A, Discovery Of Checkpoint Kinase Inhibitor Azd7762 By Structure Based Design And Optimization Of Thiophene Carboxamide Ureas Length = 276

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 688 FGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYG 747
           + H I I H D+KP N+LLDE     ISDFG+A +    ++     +   T+ Y+APE  
Sbjct: 120 YLHGIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMXGTLPYVAPELL 179
Query: 748 TKGRVSTRG-DVCSFGII 764
            +        DV S GI+
Sbjct: 180 KRREFHAEPVDVWSCGIV 197

>pdb|1ZZL|A Chain A, Crystal Structure Of P38 With Triazolopyridine Length = 351

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 678 IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLA 737
           +I   L  L + HS  IIH DLKPSN+ ++ED    I DFG+A+    E      T  +A
Sbjct: 127 LIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDE-----MTGYVA 181
Query: 738 TIGYMAPE 745
           T  Y APE
Sbjct: 182 TRWYRAPE 189

>pdb|4ERW|A Chain A, Cdk2 In Complex With Staurosporine Length = 306

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 32/91 (35%), Positives = 47/91 (51%), Gaps = 5/91 (5%)
Query: 683 LEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYM 742
           L+ L F HS  ++H DLKP N+L++ +    ++DFG+A+       +   T  + T+ Y 
Sbjct: 120 LQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVP--VRTYTHEVVTLWYR 177
Query: 743 APE--YGTKGRVSTRGDVCSFGIISGGKETR 771
           APE   G K   ST  D+ S G I     TR
Sbjct: 178 APEILLGXK-YYSTAVDIWSLGCIFAEMVTR 207

>pdb|3S3I|A Chain A, P38 Kinase Crystal Structure In Complex With Small Molecule Inhibitor Length = 349

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 678 IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLA 737
           +I   L  L + HS  IIH DLKPSN+ ++ED    I DFG+A+    E      T  +A
Sbjct: 127 LIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDE-----MTGYVA 181
Query: 738 TIGYMAPE 745
           T  Y APE
Sbjct: 182 TRWYRAPE 189

>pdb|3MPT|A Chain A, Crystal Structure Of P38 Kinase In Complex With A Pyrrole-2- Carboxamide Inhibitor Length = 371

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 678 IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLA 737
           +I   L  L + HS  IIH DLKPSN+ ++ED    I DFG+A+    E      T  +A
Sbjct: 141 LIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDE-----MTGYVA 195
Query: 738 TIGYMAPE 745
           T  Y APE
Sbjct: 196 TRWYRAPE 203

>pdb|2H34|A Chain A, Apoenzyme Crystal Structure Of The Tuberculosis SerineTHREONINE Kinase, Pkne Length = 309

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Query: 696 HCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTR 755
           H D+KP N+L+  D  A++ DFGIA   + E +L++   T+ T+ Y APE  ++   + R
Sbjct: 157 HRDVKPENILVSADDFAYLVDFGIASATTDE-KLTQLGNTVGTLYYXAPERFSESHATYR 215
Query: 756 GDVCSF 761
            D+ + 
Sbjct: 216 ADIYAL 221

>pdb|1OIR|A Chain A, Imidazopyridines: A Potent And Selective Class Of Cyclin-Dependent Kinase Inhibitors Identified Through Structure-Based Hybridisation Length = 299

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 32/91 (35%), Positives = 47/91 (51%), Gaps = 5/91 (5%)
Query: 683 LEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYM 742
           L+ L F HS  ++H DLKP N+L++ +    ++DFG+A+       +   T  + T+ Y 
Sbjct: 113 LQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVP--VRTYTHEVVTLWYR 170
Query: 743 APE--YGTKGRVSTRGDVCSFGIISGGKETR 771
           APE   G K   ST  D+ S G I     TR
Sbjct: 171 APEILLGCK-YYSTAVDIWSLGCIFAEMVTR 200

>pdb|2BAJ|A Chain A, P38alpha Bound To Pyrazolourea Length = 365

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 678 IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLA 737
           +I   L  L + HS  IIH DLKPSN+ ++ED    I DFG+A+    E      T  +A
Sbjct: 135 LIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDE-----MTGYVA 189
Query: 738 TIGYMAPE 745
           T  Y APE
Sbjct: 190 TRWYRAPE 197

>pdb|1H01|A Chain A, Cdk2 In Complex With A Disubstituted 2, 4-Bis Anilino Pyrimidine Cdk4 Inhibitor Length = 298

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 32/91 (35%), Positives = 47/91 (51%), Gaps = 5/91 (5%)
Query: 683 LEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYM 742
           L+ L F HS  ++H DLKP N+L++ +    ++DFG+A+       +   T  + T+ Y 
Sbjct: 112 LQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVP--VRTYTHEVVTLWYR 169
Query: 743 APE--YGTKGRVSTRGDVCSFGIISGGKETR 771
           APE   G K   ST  D+ S G I     TR
Sbjct: 170 APEILLGCK-YYSTAVDIWSLGCIFAEMVTR 199

>pdb|3OEF|X Chain X, Crystal Structure Of Y323f Inactive Mutant Of P38alpha Map Kinase Length = 360

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 678 IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLA 737
           +I   L  L + HS  IIH DLKPSN+ ++ED    I DFG+A+    E      T  +A
Sbjct: 130 LIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDE-----MTGYVA 184
Query: 738 TIGYMAPE 745
           T  Y APE
Sbjct: 185 TRWYRAPE 192

>pdb|3K3I|A Chain A, P38alpha Bound To Novel Dgf-Out Compound Pf-00215955 Length = 350

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 678 IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLA 737
           +I   L  L + HS  IIH DLKPSN+ ++ED    I DFG+A+    E      T  +A
Sbjct: 128 LIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDE-----MTGYVA 182
Query: 738 TIGYMAPE 745
           T  Y APE
Sbjct: 183 TRWYRAPE 190

>pdb|3K3J|A Chain A, P38alpha Bound To Novel Dfg-Out Compound Pf-00416121 Length = 362

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 678 IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLA 737
           +I   L  L + HS  IIH DLKPSN+ ++ED    I DFG+A+    E      T  +A
Sbjct: 132 LIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDE-----MTGYVA 186
Query: 738 TIGYMAPE 745
           T  Y APE
Sbjct: 187 TRWYRAPE 194

>pdb|3HRB|A Chain A, P38 Kinase Crystal Structure In Complex With Small Molecule Inhibitor Length = 359

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 678 IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLA 737
           +I   L  L + HS  IIH DLKPSN+ ++ED    I DFG+A+    E      T  +A
Sbjct: 129 LIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDE-----MTGYVA 183
Query: 738 TIGYMAPE 745
           T  Y APE
Sbjct: 184 TRWYRAPE 191

>pdb|2W17|A Chain A, Cdk2 In Complex With The Imidazole Pyrimidine Amide, Compound (S)-8b Length = 299

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 32/91 (35%), Positives = 47/91 (51%), Gaps = 5/91 (5%)
Query: 683 LEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYM 742
           L+ L F HS  ++H DLKP N+L++ +    ++DFG+A+       +   T  + T+ Y 
Sbjct: 113 LQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVP--VRTYTHEVVTLWYR 170
Query: 743 APE--YGTKGRVSTRGDVCSFGIISGGKETR 771
           APE   G K   ST  D+ S G I     TR
Sbjct: 171 APEILLGCK-YYSTAVDIWSLGCIFAEMVTR 200

>pdb|3QD2|B Chain B, Crsytal Structure Of Mouse Perk Kinase Domain Length = 332

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 64/155 (41%), Gaps = 15/155 (9%)
Query: 624 LRATDRFSENNLIGIGNGMEVAVKVFHQQYERALKSFED----ECEVRKRIRHRNLVKII 679
           +R  D FS  N +G        V ++ Q      ++ +D     C +  R  H   + I 
Sbjct: 112 IRRMDPFSTKNTVGQLQPSSPKVYLYIQMQLCRKENLKDWMNRRCSLEDR-EHGVCLHIF 170
Query: 680 SSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQ----------L 729
               E + F HS  ++H DLKPSN+    D V  + DFG+   +  +++           
Sbjct: 171 IQIAEAVEFLHSKGLMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLTPMPAY 230
Query: 730 SKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
           +     + T  YM+PE       S + D+ S G+I
Sbjct: 231 ATHXGQVGTKLYMSPEQIHGNNYSHKVDIFSLGLI 265

>pdb|3HEC|A Chain A, P38 In Complex With Imatinib Length = 348

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 678 IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLA 737
           +I   L  L + HS  IIH DLKPSN+ ++ED    I DFG+A+    E      T  +A
Sbjct: 126 LIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDE-----MTGYVA 180
Query: 738 TIGYMAPE 745
           T  Y APE
Sbjct: 181 TRWYRAPE 188

>pdb|3GCU|A Chain A, Human P38 Map Kinase In Complex With Rl48 Length = 360

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 678 IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLA 737
           +I   L  L + HS  IIH DLKPSN+ ++ED    I DFG+A+    E      T  +A
Sbjct: 130 LIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDE-----MTGYVA 184
Query: 738 TIGYMAPE 745
           T  Y APE
Sbjct: 185 TRWYRAPE 192

>pdb|3EZR|A Chain A, Cdk-2 With Indazole Inhibitor 17 Bound At Its Active Site Length = 300

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 32/91 (35%), Positives = 47/91 (51%), Gaps = 5/91 (5%)
Query: 683 LEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYM 742
           L+ L F HS  ++H DLKP N+L++ +    ++DFG+A+       +   T  + T+ Y 
Sbjct: 114 LQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVP--VRTYTHEVVTLWYR 171
Query: 743 APE--YGTKGRVSTRGDVCSFGIISGGKETR 771
           APE   G K   ST  D+ S G I     TR
Sbjct: 172 APEILLGCK-YYSTAVDIWSLGCIFAEMVTR 201

>pdb|1FIN|A Chain A, Cyclin A-Cyclin-Dependent Kinase 2 Complex Length = 298

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 32/91 (35%), Positives = 47/91 (51%), Gaps = 5/91 (5%)
Query: 683 LEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYM 742
           L+ L F HS  ++H DLKP N+L++ +    ++DFG+A+       +   T  + T+ Y 
Sbjct: 112 LQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVP--VRTYTHEVVTLWYR 169
Query: 743 APE--YGTKGRVSTRGDVCSFGIISGGKETR 771
           APE   G K   ST  D+ S G I     TR
Sbjct: 170 APEILLGCK-YYSTAVDIWSLGCIFAEMVTR 199

>pdb|1OZ1|A Chain A, P38 Mitogen-Activated Kinase In Complex With 4-Azaindole Inhibitor Length = 372

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 678 IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLA 737
           +I   L  L + HS  IIH DLKPSN+ ++ED    I DFG+A+    E      T  +A
Sbjct: 142 LIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDE-----MTGYVA 196
Query: 738 TIGYMAPE 745
           T  Y APE
Sbjct: 197 TRWYRAPE 204

>pdb|4FSY|A Chain A, Crystal Structure Of The Chk1 Length = 279

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 688 FGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYG 747
           + H I I H D+KP N+LLDE     ISDFG+A +    ++     +   T+ Y+APE  
Sbjct: 119 YLHGIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELL 178
Query: 748 TKGRVSTRG-DVCSFGII 764
            +        DV S GI+
Sbjct: 179 KRREFHAEPVDVWSCGIV 196

>pdb|3D7Z|A Chain A, Crystal Structure Of P38 Kinase In Complex With A Biphenyl Amide Inhibitor Length = 360

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 678 IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLA 737
           +I   L  L + HS  IIH DLKPSN+ ++ED    I DFG+A+    E      T  +A
Sbjct: 130 LIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDE-----MTGYVA 184
Query: 738 TIGYMAPE 745
           T  Y APE
Sbjct: 185 TRWYRAPE 192

>pdb|2NPQ|A Chain A, A Novel Lipid Binding Site In The P38 Alpha Map Kinase Length = 367

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 678 IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLA 737
           +I   L  L + HS  IIH DLKPSN+ ++ED    I DFG+A+    E      T  +A
Sbjct: 137 LIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDE-----MTGYVA 191
Query: 738 TIGYMAPE 745
           T  Y APE
Sbjct: 192 TRWYRAPE 199

>pdb|2GFS|A Chain A, P38 Kinase Crystal Structure In Complex With Ro3201195 Length = 372

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 678 IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLA 737
           +I   L  L + HS  IIH DLKPSN+ ++ED    I DFG+A+    E      T  +A
Sbjct: 142 LIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDE-----MTGYVA 196
Query: 738 TIGYMAPE 745
           T  Y APE
Sbjct: 197 TRWYRAPE 204

>pdb|1PF8|A Chain A, Crystal Structure Of Human Cyclin-dependent Kinase 2 Complexed With A Nucleoside Inhibitor Length = 298

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 32/91 (35%), Positives = 47/91 (51%), Gaps = 5/91 (5%)
Query: 683 LEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYM 742
           L+ L F HS  ++H DLKP N+L++ +    ++DFG+A+       +   T  + T+ Y 
Sbjct: 112 LQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVP--VRTYTHEVVTLWYR 169
Query: 743 APE--YGTKGRVSTRGDVCSFGIISGGKETR 771
           APE   G K   ST  D+ S G I     TR
Sbjct: 170 APEILLGCK-YYSTAVDIWSLGCIFAEMVTR 199

>pdb|3FI4|A Chain A, P38 Kinase Crystal Structure In Complex With Ro4499 Length = 372

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 678 IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLA 737
           +I   L  L + HS  IIH DLKPSN+ ++ED    I DFG+A+    E      T  +A
Sbjct: 142 LIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDE-----MTGYVA 196
Query: 738 TIGYMAPE 745
           T  Y APE
Sbjct: 197 TRWYRAPE 204

>pdb|1DI9|A Chain A, The Structure Of P38 Mitogen-Activated Protein Kinase In Complex With 4-[3-Methylsulfanylanilino]-6,7- Dimethoxyquinazoline Length = 360

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 678 IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLA 737
           +I   L  L + HS  IIH DLKPSN+ ++ED    I DFG+A+    E      T  +A
Sbjct: 130 LIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDE-----MTGYVA 184
Query: 738 TIGYMAPE 745
           T  Y APE
Sbjct: 185 TRWYRAPE 192

>pdb|1GII|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The Cdk4 Inhibitor Length = 298

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 32/91 (35%), Positives = 47/91 (51%), Gaps = 5/91 (5%)
Query: 683 LEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYM 742
           L+ L F HS  ++H DLKP N+L++ +    ++DFG+A+       +   T  + T+ Y 
Sbjct: 112 LQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVP--VRTYTHEVVTLWYR 169
Query: 743 APE--YGTKGRVSTRGDVCSFGIISGGKETR 771
           APE   G K   ST  D+ S G I     TR
Sbjct: 170 APEILLGCK-YYSTAVDIWSLGCIFAEMVTR 199

>pdb|4FSU|A Chain A, Crystal Structure Of The Chk1 Length = 279

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 688 FGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYG 747
           + H I I H D+KP N+LLDE     ISDFG+A +    ++     +   T+ Y+APE  
Sbjct: 119 YLHGIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELL 178
Query: 748 TKGRVSTRG-DVCSFGII 764
            +        DV S GI+
Sbjct: 179 KRREFHAEPVDVWSCGIV 196

>pdb|2LGC|A Chain A, Joint Nmr And X-Ray Refinement Reveals The Structure Of A Novel Dibenzo[a,D]cycloheptenone InhibitorP38 MAP KINASE COMPLEX IN Solution Length = 359

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 678 IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLA 737
           +I   L  L + HS  IIH DLKPSN+ ++ED    I DFG+A+    E      T  +A
Sbjct: 135 LIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDE-----MTGYVA 189
Query: 738 TIGYMAPE 745
           T  Y APE
Sbjct: 190 TRWYRAPE 197

>pdb|3ZSG|A Chain A, X-Ray Structure Of P38alpha Bound To Tak-715 Length = 362

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 678 IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLA 737
           +I   L  L + HS  IIH DLKPSN+ ++ED    I DFG+A+    E      T  +A
Sbjct: 132 LIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDE-----MTGYVA 186
Query: 738 TIGYMAPE 745
           T  Y APE
Sbjct: 187 TRWYRAPE 194

>pdb|3HVC|A Chain A, Crystal Structure Of Human P38alpha Map Kinase Length = 362

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 678 IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLA 737
           +I   L  L + HS  IIH DLKPSN+ ++ED    I DFG+A+    E      T  +A
Sbjct: 132 LIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDE-----MTGYVA 186
Query: 738 TIGYMAPE 745
           T  Y APE
Sbjct: 187 TRWYRAPE 194

>pdb|3PXF|A Chain A, Cdk2 In Complex With Two Molecules Of 8-Anilino-1-Naphthalene Sulfonate Length = 306

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 77/175 (44%), Gaps = 11/175 (6%)
Query: 599 KSRTGPSNDGINSPQAIRRFSYHELLRATDRFSENNLIGIGNGMEVAVKVFHQQYERALK 658
           K R     +G+ S  AIR  S  + L   +     ++I   N + +  +  HQ     LK
Sbjct: 42  KIRLDTETEGVPS-TAIREISLLKELNHPNIVKLLDVIHTENKLYLVFEFLHQD----LK 96
Query: 659 SFEDECEVRKRIRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFG 718
            F D   +   I    +   +   L+ L F HS  ++H DLKP N+L++ +    ++DFG
Sbjct: 97  KFMDASALTG-IPLPLIKSYLFQLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFG 155
Query: 719 IAKLLSGEDQLSKQTQTLATIGYMAPE--YGTKGRVSTRGDVCSFGIISGGKETR 771
           +A+       +   T  + T+ Y APE   G K   ST  D+ S G I     TR
Sbjct: 156 LARAFGVP--VRTYTHEVVTLWYRAPEILLGCK-YYSTAVDIWSLGCIFAEMVTR 207

>pdb|3P4K|A Chain A, The Third Conformation Of P38a Map Kinase Observed In Phosphorylated P38a And In Solution Length = 370

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 678 IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLA 737
           +I   L  L + HS  IIH DLKPSN+ ++ED    I DFG+A+    E      T  +A
Sbjct: 140 LIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDE-----MTGYVA 194
Query: 738 TIGYMAPE 745
           T  Y APE
Sbjct: 195 TRWYRAPE 202

>pdb|1BL6|A Chain A, The Complex Structure Of The Map Kinase P38SB216995 Length = 379

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 678 IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLA 737
           +I   L  L + HS  IIH DLKPSN+ ++ED    I DFG+A+    E      T  +A
Sbjct: 149 LIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDE-----MTGYVA 203
Query: 738 TIGYMAPE 745
           T  Y APE
Sbjct: 204 TRWYRAPE 211

>pdb|1OVE|A Chain A, The Structure Of P38 Alpha In Complex With A Dihydroquinolinone Length = 366

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 678 IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLA 737
           +I   L  L + HS  IIH DLKPSN+ ++ED    I DFG+A+    E      T  +A
Sbjct: 136 LIYQILRGLKYIHSADIIHRDLKPSNLAVNEDSELKILDFGLARHTDDE-----MTGYVA 190
Query: 738 TIGYMAPE 745
           T  Y APE
Sbjct: 191 TRWYRAPE 198

>pdb|3PJ8|A Chain A, Structure Of Cdk2 In Complex With A Pyrazolo[4,3-D]pyrimidine Bioisostere Of Roscovitine Length = 299

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 32/91 (35%), Positives = 47/91 (51%), Gaps = 5/91 (5%)
Query: 683 LEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYM 742
           L+ L F HS  ++H DLKP N+L++ +    ++DFG+A+       +   T  + T+ Y 
Sbjct: 113 LQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVP--VRTYTHEVVTLWYR 170
Query: 743 APE--YGTKGRVSTRGDVCSFGIISGGKETR 771
           APE   G K   ST  D+ S G I     TR
Sbjct: 171 APEILLGCK-YYSTAVDIWSLGCIFAEMVTR 200

>pdb|2Y8O|A Chain A, Crystal Structure Of Human P38alpha Complexed With A Mapk Docking Peptide Length = 362

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 678 IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLA 737
           +I   L  L + HS  IIH DLKPSN+ ++ED    I DFG+A+    E      T  +A
Sbjct: 132 LIYQILRGLKYIHSADIIHRDLKPSNLAVNEDSELKILDFGLARHTDDE-----MTGYVA 186
Query: 738 TIGYMAPE 745
           T  Y APE
Sbjct: 187 TRWYRAPE 194

>pdb|3KQ7|A Chain A, Structure Of Human P38alpha With N-[4-Methyl-3-(6-{[2-(1- Methylpyrrolidin-2-Yl)ethyl]amino}pyridine-3- Amido)phenyl]- 2-(Morpholin-4-Yl)pyridine-4-Carboxamide Length = 380

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 678 IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLA 737
           +I   L  L + HS  IIH DLKPSN+ ++ED    I DFG+A+    E      T  +A
Sbjct: 150 LIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDE-----MTGYVA 204
Query: 738 TIGYMAPE 745
           T  Y APE
Sbjct: 205 TRWYRAPE 212

>pdb|4FSM|A Chain A, Crystal Structure Of The Chk1 Length = 279

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 688 FGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYG 747
           + H I I H D+KP N+LLDE     ISDFG+A +    ++     +   T+ Y+APE  
Sbjct: 119 YLHGIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELL 178
Query: 748 TKGRVSTRG-DVCSFGII 764
            +        DV S GI+
Sbjct: 179 KRREFHAEPVDVWSCGIV 196

>pdb|2GTM|A Chain A, Mutated Mouse P38 Map Kinase Domain In Complex With Inhibitor Pg-892579 Length = 348

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 678 IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLA 737
           +I   L  L + HS  IIH DLKPSN+ ++ED    I DFG+A+    E      T  +A
Sbjct: 126 LIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDE-----MTGYVA 180
Query: 738 TIGYMAPE 745
           T  Y APE
Sbjct: 181 TRWYRAPE 188

>pdb|1M7Q|A Chain A, Crystal Structure Of P38 Map Kinase In Complex With A Dihydroquinazolinone Inhibitor Length = 366

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 678 IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLA 737
           +I   L  L + HS  IIH DLKPSN+ ++ED    I DFG+A+    E      T  +A
Sbjct: 136 LIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDE-----MTGYVA 190
Query: 738 TIGYMAPE 745
           T  Y APE
Sbjct: 191 TRWYRAPE 198

>pdb|3DT1|A Chain A, P38 Complexed With A Quinazoline Inhibitor Length = 383

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 678 IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLA 737
           +I   L  L + HS  IIH DLKPSN+ ++ED    I DFG+A+    E      T  +A
Sbjct: 153 LIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDE-----MTGYVA 207
Query: 738 TIGYMAPE 745
           T  Y APE
Sbjct: 208 TRWYRAPE 215

>pdb|2PUU|A Chain A, Crystal Structure Of P38 Complex With 1-(5-Tert-Butyl-2-P- Tolyl-2h-Pyrazol-3-Yl)-3-[4-(6-Morpholin-4-Ylmethyl- Pyridin-3-Yl)naphthalen-1-Yl]urea Length = 348

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 678 IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLA 737
           +I   L  L + HS  IIH DLKPSN+ ++ED    I DFG+A+    E      T  +A
Sbjct: 126 LIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDE-----MTGYVA 180
Query: 738 TIGYMAPE 745
           T  Y APE
Sbjct: 181 TRWYRAPE 188

>pdb|1LEW|A Chain A, Crystal Structure Of Map Kinase P38 Complexed To The Docking Site On Its Nuclear Substrate Mef2a Length = 360

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 678 IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLA 737
           +I   L  L + HS  IIH DLKPSN+ ++ED    I DFG+A+    E      T  +A
Sbjct: 130 LIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDE-----MTGYVA 184
Query: 738 TIGYMAPE 745
           T  Y APE
Sbjct: 185 TRWYRAPE 192

>pdb|4E5A|X Chain X, The W197a Mutant Of P38a Map Kinase Length = 360

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 678 IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLA 737
           +I   L  L + HS  IIH DLKPSN+ ++ED    I DFG+A+    E      T  +A
Sbjct: 130 LIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDE-----MTGYVA 184
Query: 738 TIGYMAPE 745
           T  Y APE
Sbjct: 185 TRWYRAPE 192

>pdb|4FSN|A Chain A, Crystal Structure Of The Chk1 Length = 278

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 688 FGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYG 747
           + H I I H D+KP N+LLDE     ISDFG+A +    ++     +   T+ Y+APE  
Sbjct: 118 YLHGIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELL 177
Query: 748 TKGRVSTRG-DVCSFGII 764
            +        DV S GI+
Sbjct: 178 KRREFHAEPVDVWSCGIV 195

>pdb|3TEI|A Chain A, Crystal Structure Of Human Erk2 Complexed With A Mapk Docking Peptide Length = 362

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 30/81 (37%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 686 LHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGE-DQLSKQTQTLATIGYMAP 744
           L + HS  ++H DLKPSN+LL+      I DFG+A++   + D     T+ +AT  Y AP
Sbjct: 139 LKYIHSANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAP 198
Query: 745 EYGTKGRVSTRG-DVCSFGII 764
           E     +  T+  D+ S G I
Sbjct: 199 EIMLNSKGYTKSIDIWSVGCI 219

>pdb|2X8E|A Chain A, Discovery Of A Novel Class Of Triazolones As Checkpoint Kinase Inhibitors - Hit To Lead Exploration Length = 276

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 688 FGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYG 747
           + H I I H D+KP N+LLDE     ISDFG+A +    ++     +   T+ Y+APE  
Sbjct: 120 YLHGIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELL 179
Query: 748 TKGRVSTRG-DVCSFGII 764
            +        DV S GI+
Sbjct: 180 KRREFHAEPVDVWSCGIV 197

>pdb|2ZV7|A Chain A, Lyn Tyrosine Kinase Domain, Apo Form Length = 279

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Query: 695 IHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVST 754
           IH DL+ +NVL+ E ++  I+DFG+A+++   +  +++      I + APE    G  + 
Sbjct: 131 IHRDLRAANVLVSESLMCKIADFGLARVIEDNEYTAREGAKFP-IKWTAPEAINFGCFTI 189
Query: 755 RGDVCSFGII 764
           + +V SFGI+
Sbjct: 190 KSNVWSFGIL 199

>pdb|2F9G|A Chain A, Crystal Structure Of Fus3 Phosphorylated On Tyr182 Length = 353

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 49/96 (51%), Gaps = 9/96 (9%)
Query: 678 IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLL--SGED------QL 729
            I  +L  +   H   +IH DLKPSN+L++ +    + DFG+A+++  S  D      Q 
Sbjct: 117 FIYQTLRAVKVLHGSNVIHRDLKPSNLLINSNCDLKVCDFGLARIIDESAADNSEPTGQQ 176
Query: 730 SKQTQTLATIGYMAPEYG-TKGRVSTRGDVCSFGII 764
           S  T+ +AT  Y APE   T  + S   DV S G I
Sbjct: 177 SGMTEXVATRWYRAPEVMLTSAKYSRAMDVWSCGCI 212

>pdb|1BMK|A Chain A, The Complex Structure Of The Map Kinase P38SB218655 Length = 379

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 678 IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLA 737
           +I   L  L + HS  IIH DLKPSN+ ++ED    I DFG+A+    E      T  +A
Sbjct: 149 LIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDE-----MTGYVA 203
Query: 738 TIGYMAPE 745
           T  Y APE
Sbjct: 204 TRWYRAPE 211

>pdb|3KUL|B Chain B, Kinase Domain Of Human Ephrin Type-A Receptor 8 (Epha8) Length = 325

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 48/92 (52%), Gaps = 4/92 (4%)
Query: 674 NLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGE-DQLSKQ 732
            +++ + + + YL     +  +H DL   NVL+D ++V  +SDFG++++L  + D     
Sbjct: 155 GMLRGVGAGMRYLS---DLGYVHRDLAARNVLVDSNLVCKVSDFGLSRVLEDDPDAAXTT 211
Query: 733 TQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
           T     I + APE       S+  DV SFG++
Sbjct: 212 TGGKIPIRWTAPEAIAFRTFSSASDVWSFGVV 243

>pdb|1VYW|A Chain A, Structure Of Cdk2CYCLIN A WITH PNU-292137 Length = 309

Iteration: 1
 Score = 46.6 bits (109), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 32/91 (35%), Positives = 47/91 (51%), Gaps = 5/91 (5%)
Query: 683 LEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYM 742
           L+ L F HS  ++H DLKP N+L++ +    ++DFG+A+       +   T  + T+ Y 
Sbjct: 117 LQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVP--VRTYTHEVVTLWYR 174
Query: 743 APE--YGTKGRVSTRGDVCSFGIISGGKETR 771
           APE   G K   ST  D+ S G I     TR
Sbjct: 175 APEILLGCK-YYSTAVDIWSLGCIFAEMVTR 204

>pdb|3TG1|A Chain A, Crystal Structure Of P38alpha In Complex With A Mapk Docking Partner Length = 380

Iteration: 1
 Score = 46.6 bits (109), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 678 IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLA 737
           +I   L  L + HS  IIH DLKPSN+ ++ED    I DFG+A+    E      T  +A
Sbjct: 150 LIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDE-----MTGYVA 204
Query: 738 TIGYMAPE 745
           T  Y APE
Sbjct: 205 TRWYRAPE 212

>pdb|3NYX|A Chain A, Non-Phosphorylated Tyk2 Jh1 Domain With Quinoline-Thiadiazole- Thiophene Inhibitor Length = 302

Iteration: 1
 Score = 46.6 bits (109), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 4/90 (4%)
Query: 675 LVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLL-SGEDQLSKQT 733
             + I   + YLH  H    IH +L   NVLLD D +  I DFG+AK +  G +    + 
Sbjct: 122 FAQQICEGMAYLHSQH---YIHRNLAARNVLLDNDRLVKIGDFGLAKAVPEGHEYYRVRE 178
Query: 734 QTLATIGYMAPEYGTKGRVSTRGDVCSFGI 763
              + + + APE   + +     DV SFG+
Sbjct: 179 DGDSPVFWYAPECLKEYKFYYASDVWSFGV 208

>pdb|2HOG|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 20 Length = 322

Iteration: 1
 Score = 46.6 bits (109), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 690 HSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTK 749
           H I I H D+KP N+LLDE     ISDFG+A +    ++     +   T+ Y+APE   +
Sbjct: 121 HGIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELLKR 180
Query: 750 GRVSTRG-DVCSFGII 764
                   DV S GI+
Sbjct: 181 REFHAEPVDVWSCGIV 196

>pdb|3OHT|A Chain A, Crystal Structure Of Salmo Salar P38alpha Length = 389

Iteration: 1
 Score = 46.6 bits (109), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 678 IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLA 737
           +I   L  L + HS  IIH DLKPSN+ ++ED    I DFG+A+    E      T  +A
Sbjct: 159 LIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDE-----MTGYVA 213
Query: 738 TIGYMAPE 745
           T  Y APE
Sbjct: 214 TRWYRAPE 221

>pdb|2R0U|A Chain A, Crystal Structure Of Chek1 In Complex With Inhibitor 54 Length = 323

Iteration: 1
 Score = 46.6 bits (109), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 690 HSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTK 749
           H I I H D+KP N+LLDE     ISDFG+A +    ++     +   T+ Y+APE   +
Sbjct: 122 HGIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELLKR 181
Query: 750 GRVSTRG-DVCSFGII 764
                   DV S GI+
Sbjct: 182 REFHAEPVDVWSCGIV 197

>pdb|4H3Q|A Chain A, Crystal Structure Of Human Erk2 Complexed With A Mapk Docking Peptide Length = 362

Iteration: 1
 Score = 46.6 bits (109), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 30/81 (37%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 686 LHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGE-DQLSKQTQTLATIGYMAP 744
           L + HS  ++H DLKPSN+LL+      I DFG+A++   + D     T+ +AT  Y AP
Sbjct: 139 LKYIHSANVLHRDLKPSNLLLNTTSDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAP 198
Query: 745 EYGTKGRVSTRG-DVCSFGII 764
           E     +  T+  D+ S G I
Sbjct: 199 EIMLNSKGYTKSIDIWSVGCI 219

>pdb|2B9F|A Chain A, Crystal Structure Of Non-Phosphorylated Fus3 Length = 353

Iteration: 1
 Score = 46.6 bits (109), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 49/96 (51%), Gaps = 9/96 (9%)
Query: 678 IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLL--SGED------QL 729
            I  +L  +   H   +IH DLKPSN+L++ +    + DFG+A+++  S  D      Q 
Sbjct: 117 FIYQTLRAVKVLHGSNVIHRDLKPSNLLINSNCDLKVCDFGLARIIDESAADNSEPTGQQ 176
Query: 730 SKQTQTLATIGYMAPEYG-TKGRVSTRGDVCSFGII 764
           S  T+ +AT  Y APE   T  + S   DV S G I
Sbjct: 177 SGMTEYVATRWYRAPEVMLTSAKYSRAMDVWSCGCI 212

>pdb|3OCT|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase Mutant V555r In Complex With Dasatinib Length = 265

Iteration: 1
 Score = 46.6 bits (109), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 23/100 (23%), Positives = 53/100 (53%), Gaps = 1/100 (1%)
Query: 665 EVRKRIRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLS 724
           E+R R + + L+++     E + +  S   +H DL   N L+++  V  +SDFG+++ + 
Sbjct: 97  EMRHRFQTQQLLEMCKDVCEAMEYLESKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVL 156
Query: 725 GEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
            +D+ +    +   + +  PE     + S++ D+ +FG++
Sbjct: 157 -DDEYTSSRGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVL 195

>pdb|2BR1|A Chain A, Structure-Based Design Of Novel Chk1 Inhibitors: Insights Into Hydrogen Bonding And Protein-Ligand Affinity Length = 297

Iteration: 1
 Score = 46.6 bits (109), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 690 HSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTK 749
           H I I H D+KP N+LLDE     ISDFG+A +    ++     +   T+ Y+APE   +
Sbjct: 122 HGIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELLKR 181
Query: 750 GRVSTRG-DVCSFGII 764
                   DV S GI+
Sbjct: 182 REFHAEPVDVWSCGIV 197

>pdb|1IA8|A Chain A, The 1.7 A Crystal Structure Of Human Cell Cycle Checkpoint Kinase Chk1 Length = 289

Iteration: 1
 Score = 46.6 bits (109), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 690 HSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTK 749
           H I I H D+KP N+LLDE     ISDFG+A +    ++     +   T+ Y+APE   +
Sbjct: 122 HGIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELLKR 181
Query: 750 GRVSTRG-DVCSFGII 764
                   DV S GI+
Sbjct: 182 REFHAEPVDVWSCGIV 197

>pdb|1ZLT|A Chain A, Crystal Structure Of Chk1 Complexed With A Hymenaldisine Analog Length = 295

Iteration: 1
 Score = 46.6 bits (109), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 690 HSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTK 749
           H I I H D+KP N+LLDE     ISDFG+A +    ++     +   T+ Y+APE   +
Sbjct: 122 HGIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELLKR 181
Query: 750 GRVSTRG-DVCSFGII 764
                   DV S GI+
Sbjct: 182 REFHAEPVDVWSCGIV 197

>pdb|1IAN|A Chain A, Human P38 Map Kinase Inhibitor Complex Length = 366

Iteration: 1
 Score = 46.2 bits (108), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 678 IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLA 737
           +I   L  L + HS  IIH DLKPSN+ ++ED    I DFG+A+    E      T  +A
Sbjct: 136 LIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDE-----MTGYVA 190
Query: 738 TIGYMAPE 745
           T  Y APE
Sbjct: 191 TRWYRAPE 198

>pdb|3KUL|A Chain A, Kinase Domain Of Human Ephrin Type-A Receptor 8 (Epha8) Length = 325

Iteration: 1
 Score = 46.2 bits (108), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 48/92 (52%), Gaps = 4/92 (4%)
Query: 674 NLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGE-DQLSKQ 732
            +++ + + + YL     +  +H DL   NVL+D ++V  +SDFG++++L  + D     
Sbjct: 155 GMLRGVGAGMRYLS---DLGYVHRDLAARNVLVDSNLVCKVSDFGLSRVLEDDPDAAYTT 211
Query: 733 TQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
           T     I + APE       S+  DV SFG++
Sbjct: 212 TGGKIPIRWTAPEAIAFRTFSSASDVWSFGVV 243

>pdb|1J3H|A Chain A, Crystal Structure Of Apoenzyme Camp-Dependent Protein Kinase Catalytic Subunit Length = 350

Iteration: 1
 Score = 46.2 bits (108), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 36/64 (56%), Gaps = 8/64 (12%)
Query: 682 SLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGY 741
           + EYLH   S+ +I+ DLKP N+L+D+     ++DFG AK + G     +      T  Y
Sbjct: 153 TFEYLH---SLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKG-----RTWXLXGTPEY 204
Query: 742 MAPE 745
           +APE
Sbjct: 205 LAPE 208

>pdb|3DKG|A Chain A, Sgx Clone 5698a109kfg1h1 Length = 317

Iteration: 1
 Score = 46.2 bits (108), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Query: 686 LHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAK-LLSGE-DQLSKQTQTLATIGYMA 743
           + F  S   +H DL   N +LDE     ++DFG+A+ +L  E D +  +T     + +MA
Sbjct: 147 MKFLASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMLDKEFDSVHNKTGAKLPVKWMA 206
Query: 744 PEYGTKGRVSTRGDVCSFGII 764
            E     + +T+ DV SFG++
Sbjct: 207 LESLQTQKFTTKSDVWSFGVL 227

>pdb|2Y6M|A Chain A, Crystal Structure Of Epha4 Kinase Domain Length = 291

Iteration: 1
 Score = 46.2 bits (108), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 25/91 (27%), Positives = 52/91 (57%), Gaps = 4/91 (4%)
Query: 675 LVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQ 734
           +++ I S ++YL     +  +H DL   N+L++ ++V  +SDFG++++L  + + +  T+
Sbjct: 121 MLRGIGSGMKYLS---DMSYVHRDLAARNILVNSNLVCKVSDFGMSRVLEDDPEAAYTTR 177
Query: 735 TLAT-IGYMAPEYGTKGRVSTRGDVCSFGII 764
                I + APE     + ++  DV S+GI+
Sbjct: 178 GGKIPIRWTAPEAIAYRKFTSASDVWSYGIV 208

>pdb|2V5Q|A Chain A, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 315

Iteration: 1
 Score = 46.2 bits (108), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 58/122 (47%), Gaps = 10/122 (8%)
Query: 673 RNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQ 732
           R  ++ I    +YLH      +IH DLK  N+ L+ED+   I DFG+A  +  + +  ++
Sbjct: 124 RYYLRQIVLGCQYLHRNR---VIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYDGE--RK 178
Query: 733 TQTLATIGYMAPEYGTKGRVSTRGDVCSFGIIS-----GGKETRSMTVGETCTPVRESKY 787
                T  Y+APE  +K   S   DV S G I      G     +  + ET   +++++Y
Sbjct: 179 KTLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCLKETYLRIKKNEY 238
Query: 788 EV 789
            +
Sbjct: 239 SI 240

>pdb|2HEL|A Chain A, Crystal Structure Of A Mutant Epha4 Kinase Domain (Y742a) Length = 306

Iteration: 1
 Score = 46.2 bits (108), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 25/91 (27%), Positives = 52/91 (57%), Gaps = 4/91 (4%)
Query: 675 LVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQ 734
           +++ I S ++YL     +  +H DL   N+L++ ++V  +SDFG++++L  + + +  T+
Sbjct: 136 MLRGIGSGMKYLS---DMSAVHRDLAARNILVNSNLVCKVSDFGMSRVLEDDPEAAYTTR 192
Query: 735 TLAT-IGYMAPEYGTKGRVSTRGDVCSFGII 764
                I + APE     + ++  DV S+GI+
Sbjct: 193 GGKIPIRWTAPEAIAYRKFTSASDVWSYGIV 223

>pdb|3KB7|A Chain A, Crystal Structure Of Polo-Like Kinase 1 In Complex With A Pyrazoloquinazoline Inhibitor Length = 311

Iteration: 1
 Score = 46.2 bits (108), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 58/122 (47%), Gaps = 10/122 (8%)
Query: 673 RNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQ 732
           R  ++ I    +YLH      +IH DLK  N+ L+ED+   I DFG+A  +  + +  ++
Sbjct: 120 RYYLRQIVLGCQYLHRNR---VIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYDGE--RK 174
Query: 733 TQTLATIGYMAPEYGTKGRVSTRGDVCSFGIIS-----GGKETRSMTVGETCTPVRESKY 787
                T  Y+APE  +K   S   DV S G I      G     +  + ET   +++++Y
Sbjct: 175 KTLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCLKETYLRIKKNEY 234
Query: 788 EV 789
            +
Sbjct: 235 SI 236

>pdb|2OZA|B Chain B, Structure Of P38alpha Complex Length = 366

Iteration: 1
 Score = 46.2 bits (108), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 678 IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLA 737
           +I   L  L + HS  IIH DLKPSN+ ++ED    I DFG+A+    E      T  +A
Sbjct: 136 LIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDE-----MTGYVA 190
Query: 738 TIGYMAPE 745
           T  Y APE
Sbjct: 191 TRWYRAPE 198

>pdb|4FST|A Chain A, Crystal Structure Of The Chk1 Length = 269

Iteration: 1
 Score = 46.2 bits (108), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 28/76 (36%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 690 HSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTK 749
           H I I H D+KP N+LLDE     ISDFG+A +    ++     +   T+ Y+APE   +
Sbjct: 121 HGIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMXGTLPYVAPELLKR 180
Query: 750 GRVSTRG-DVCSFGII 764
                   DV S GI+
Sbjct: 181 REFHAEPVDVWSCGIV 196

>pdb|3V5Q|A Chain A, Discovery Of A Selective Trk Inhibitor With Efficacy In Rodent Cancer Tumor Models Length = 297

Iteration: 1
 Score = 46.2 bits (108), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 3/86 (3%)
Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLAT 738
           I+S + YL   H    +H DL   N L+  +++  I DFG+++ +   D       T+  
Sbjct: 142 IASGMVYLASQH---FVHRDLATRNCLVGANLLVKIGDFGMSRDVYSTDYYRVGGHTMLP 198
Query: 739 IGYMAPEYGTKGRVSTRGDVCSFGII 764
           I +M PE     + +T  DV SFG+I
Sbjct: 199 IRWMPPESIMYRKFTTESDVWSFGVI 224

>pdb|2XYU|A Chain A, Crystal Structure Of Epha4 Kinase Domain In Complex With Vuf 12058 Length = 285

Iteration: 1
 Score = 46.2 bits (108), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 25/91 (27%), Positives = 52/91 (57%), Gaps = 4/91 (4%)
Query: 675 LVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQ 734
           +++ I S ++YL     +  +H DL   N+L++ ++V  +SDFG++++L  + + +  T+
Sbjct: 115 MLRGIGSGMKYLS---DMSYVHRDLAARNILVNSNLVCKVSDFGMSRVLEDDPEAAYTTR 171
Query: 735 TLAT-IGYMAPEYGTKGRVSTRGDVCSFGII 764
                I + APE     + ++  DV S+GI+
Sbjct: 172 GGKIPIRWTAPEAIAYRKFTSASDVWSYGIV 202

>pdb|2YAC|A Chain A, Crystal Structure Of Polo-Like Kinase 1 In Complex With Nms-P937 Length = 311

Iteration: 1
 Score = 46.2 bits (108), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 58/122 (47%), Gaps = 10/122 (8%)
Query: 673 RNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQ 732
           R  ++ I    +YLH      +IH DLK  N+ L+ED+   I DFG+A  +  + +  ++
Sbjct: 120 RYYLRQIVLGCQYLHRNR---VIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYDGE--RK 174
Query: 733 TQTLATIGYMAPEYGTKGRVSTRGDVCSFGIIS-----GGKETRSMTVGETCTPVRESKY 787
                T  Y+APE  +K   S   DV S G I      G     +  + ET   +++++Y
Sbjct: 175 KTLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCLKETYLRIKKNEY 234
Query: 788 EV 789
            +
Sbjct: 235 SI 236

>pdb|3OT3|A Chain A, X-Ray Crystal Structure Of Compound 22k Bound To Human Chk1 Kinase Domain Length = 273

Iteration: 1
 Score = 46.2 bits (108), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 28/76 (36%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 690 HSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTK 749
           H I I H D+KP N+LLDE     ISDFG+A +    ++     +   T+ Y+APE   +
Sbjct: 121 HGIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELLKR 180
Query: 750 GRVSTRG-DVCSFGII 764
                   DV S GI+
Sbjct: 181 REFHAEPVDVWSCGIV 196

>pdb|3JVR|A Chain A, Characterization Of The Chk1 Allosteric Inhibitor Binding Site Length = 271

Iteration: 1
 Score = 46.2 bits (108), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 28/76 (36%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 690 HSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTK 749
           H I I H D+KP N+LLDE     ISDFG+A +    ++     +   T+ Y+APE   +
Sbjct: 121 HGIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELLKR 180
Query: 750 GRVSTRG-DVCSFGII 764
                   DV S GI+
Sbjct: 181 REFHAEPVDVWSCGIV 196

>pdb|2E9V|A Chain A, Structure Of H-Chk1 Complexed With A859017 Length = 268

Iteration: 1
 Score = 46.2 bits (108), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 28/76 (36%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 690 HSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTK 749
           H I I H D+KP N+LLDE     ISDFG+A +    ++     +   T+ Y+APE   +
Sbjct: 121 HGIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELLKR 180
Query: 750 GRVSTRG-DVCSFGII 764
                   DV S GI+
Sbjct: 181 REFHAEPVDVWSCGIV 196

>pdb|2GHG|A Chain A, H-Chk1 Complexed With A431994 Length = 269

Iteration: 1
 Score = 46.2 bits (108), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 28/76 (36%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 690 HSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTK 749
           H I I H D+KP N+LLDE     ISDFG+A +    ++     +   T+ Y+APE   +
Sbjct: 121 HGIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELLKR 180
Query: 750 GRVSTRG-DVCSFGII 764
                   DV S GI+
Sbjct: 181 REFHAEPVDVWSCGIV 196

>pdb|2AYP|A Chain A, Crystal Structure Of Chk1 With An Indol Inhibitor Length = 269

Iteration: 1
 Score = 46.2 bits (108), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 28/76 (36%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 690 HSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTK 749
           H I I H D+KP N+LLDE     ISDFG+A +    ++     +   T+ Y+APE   +
Sbjct: 122 HGIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELLKR 181
Query: 750 GRVSTRG-DVCSFGII 764
                   DV S GI+
Sbjct: 182 REFHAEPVDVWSCGIV 197

>pdb|1ZYS|A Chain A, Co-Crystal Structure Of Checkpoint Kinase Chk1 With A Pyrrolo-Pyridine Inhibitor Length = 273

Iteration: 1
 Score = 46.2 bits (108), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 28/76 (36%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 690 HSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTK 749
           H I I H D+KP N+LLDE     ISDFG+A +    ++     +   T+ Y+APE   +
Sbjct: 122 HGIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELLKR 181
Query: 750 GRVSTRG-DVCSFGII 764
                   DV S GI+
Sbjct: 182 REFHAEPVDVWSCGIV 197

>pdb|2R2P|A Chain A, Kinase Domain Of Human Ephrin Type-A Receptor 5 (Epha5) Length = 295

Iteration: 1
 Score = 46.2 bits (108), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 25/91 (27%), Positives = 53/91 (58%), Gaps = 4/91 (4%)
Query: 675 LVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQ 734
           +++ IS+ ++YL     +  +H DL   N+L++ ++V  +SDFG++++L  + + +  T+
Sbjct: 129 MLRGISAGMKYLS---DMGYVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTTR 185
Query: 735 -TLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
                I + APE     + ++  DV S+GI+
Sbjct: 186 GGKIPIRWTAPEAIAFRKFTSASDVWSYGIV 216

>pdb|2QCS|A Chain A, A Complex Structure Between The Catalytic And Regulatory Subunit Of Protein Kinase A That Represents The Inhibited State Length = 350

Iteration: 1
 Score = 46.2 bits (108), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 38/65 (58%), Gaps = 10/65 (15%)
Query: 682 SLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTL-ATIG 740
           + EYLH   S+ +I+ DLKP N+L+D+     ++DFG AK + G      +T  L  T  
Sbjct: 153 TFEYLH---SLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKG------RTWXLCGTPE 203
Query: 741 YMAPE 745
           Y+APE
Sbjct: 204 YLAPE 208

>pdb|1BKX|A Chain A, A Binary Complex Of The Catalytic Subunit Of Camp-Dependent Protein Kinase And Adenosine Further Defines Conformational Flexibility Length = 350

Iteration: 1
 Score = 46.2 bits (108), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 38/65 (58%), Gaps = 10/65 (15%)
Query: 682 SLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTL-ATIG 740
           + EYLH   S+ +I+ DLKP N+L+D+     ++DFG AK + G      +T  L  T  
Sbjct: 153 TFEYLH---SLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKG------RTWXLCGTPE 203
Query: 741 YMAPE 745
           Y+APE
Sbjct: 204 YLAPE 208

>pdb|1ZYC|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: Wild- Type In Apo Form. Length = 303

Iteration: 1
 Score = 46.2 bits (108), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 37/105 (35%), Positives = 48/105 (45%), Gaps = 21/105 (20%)
Query: 677 KIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAK--------------- 721
           ++    LE L + HS  IIH DLKP N+ +DE     I DFG+AK               
Sbjct: 120 RLFRQILEALSYIHSQGIIHRDLKPMNIFIDESRNVKIGDFGLAKNVHRSLDILKLDSQN 179
Query: 722 LLSGEDQLSKQTQTLATIGYMAPEY--GTKGRVSTRGDVCSFGII 764
           L    D L   T  + T  Y+A E   GT G  + + D+ S GII
Sbjct: 180 LPGSSDNL---TSAIGTAMYVATEVLDGT-GHYNEKIDMYSLGII 220

>pdb|1FMO|E Chain E, Crystal Structure Of A Polyhistidine-Tagged Recombinant Catalytic Subunit Of Camp-Dependent Protein Kinase Complexed With The Peptide Inhibitor Pki(5-24) And Adenosine Length = 350

Iteration: 1
 Score = 46.2 bits (108), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 38/65 (58%), Gaps = 10/65 (15%)
Query: 682 SLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTL-ATIG 740
           + EYLH   S+ +I+ DLKP N+L+D+     ++DFG AK + G      +T  L  T  
Sbjct: 153 TFEYLH---SLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKG------RTWXLCGTPE 203
Query: 741 YMAPE 745
           Y+APE
Sbjct: 204 YLAPE 208

>pdb|2ERZ|E Chain E, Crystal Structure Of C-amp Dependent Kinase (pka) Bound To Hydroxyfasudil Length = 351

Iteration: 1
 Score = 46.2 bits (108), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 38/65 (58%), Gaps = 10/65 (15%)
Query: 682 SLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTL-ATIG 740
           + EYLH   S+ +I+ DLKP N+L+D+     ++DFG AK + G      +T  L  T  
Sbjct: 154 TFEYLH---SLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKG------RTWXLCGTPE 204
Query: 741 YMAPE 745
           Y+APE
Sbjct: 205 YLAPE 209

>pdb|1SYK|A Chain A, Crystal Structure Of E230q Mutant Of Camp-Dependent Protein Kinase Reveals Unexpected Apoenzyme Conformation Length = 350

Iteration: 1
 Score = 46.2 bits (108), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 38/65 (58%), Gaps = 10/65 (15%)
Query: 682 SLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTL-ATIG 740
           + EYLH   S+ +I+ DLKP N+L+D+     ++DFG AK + G      +T  L  T  
Sbjct: 153 TFEYLH---SLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKG------RTWXLCGTPE 203
Query: 741 YMAPE 745
           Y+APE
Sbjct: 204 YLAPE 208

>pdb|1P14|A Chain A, Crystal Structure Of A Catalytic-Loop Mutant Of The Insulin Receptor Tyrosine Kinase Length = 306

Iteration: 1
 Score = 46.2 bits (108), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLAT 738
           I+  + YL+   +   +H +L   N ++  D    I DFG+ + +   D   K  + L  
Sbjct: 139 IADGMAYLN---AKKFVHRNLAARNCMVAHDFTVKIGDFGMTRDIYETDYYRKGGKGLLP 195
Query: 739 IGYMAPEYGTKGRVSTRGDVCSFGII 764
           + +MAPE    G  +T  D+ SFG++
Sbjct: 196 VRWMAPESLKDGVFTTSSDMWSFGVV 221

>pdb|4E20|A Chain A, Structure Of Mouse Tyk-2 Complexed To A 3-Aminoindazole Inhibitor Length = 290

Iteration: 1
 Score = 46.2 bits (108), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 42/90 (46%), Gaps = 4/90 (4%)
Query: 675 LVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLL-SGEDQLSKQT 733
             + I   + YLH  H    IH  L   NVLLD D +  I DFG+AK +  G +    + 
Sbjct: 116 FAQQICEGMAYLHAQH---YIHRALAARNVLLDNDRLVKIGDFGLAKAVPEGHEYYRVRE 172
Query: 734 QTLATIGYMAPEYGTKGRVSTRGDVCSFGI 763
              + + + APE   + +     DV SFG+
Sbjct: 173 DGDSPVFWYAPECLKECKFYYASDVWSFGV 202

>pdb|3PVB|A Chain A, Crystal Structure Of (73-244)ria:c Holoenzyme Of Camp-Dependent Protein Kinase Length = 345

Iteration: 1
 Score = 46.2 bits (108), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 38/65 (58%), Gaps = 10/65 (15%)
Query: 682 SLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTL-ATIG 740
           + EYLH   S+ +I+ DLKP N+L+D+     ++DFG AK + G      +T  L  T  
Sbjct: 148 TFEYLH---SLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKG------RTWXLCGTPE 198
Query: 741 YMAPE 745
           Y+APE
Sbjct: 199 YLAPE 203

>pdb|1APM|E Chain E, 2.0 Angstrom Refined Crystal Structure Of The Catalytic Subunit Of Camp-Dependent Protein Kinase Complexed With A Peptide Inhibitor And Detergent Length = 350

Iteration: 1
 Score = 46.2 bits (108), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 38/65 (58%), Gaps = 10/65 (15%)
Query: 682 SLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTL-ATIG 740
           + EYLH   S+ +I+ DLKP N+L+D+     ++DFG AK + G      +T  L  T  
Sbjct: 153 TFEYLH---SLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKG------RTWXLCGTPE 203
Query: 741 YMAPE 745
           Y+APE
Sbjct: 204 YLAPE 208

>pdb|1JBP|E Chain E, Crystal Structure Of The Catalytic Subunit Of Camp- Dependent Protein Kinase Complexed With A Substrate Peptide, Adp And Detergent Length = 350

Iteration: 1
 Score = 46.2 bits (108), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 38/65 (58%), Gaps = 10/65 (15%)
Query: 682 SLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTL-ATIG 740
           + EYLH   S+ +I+ DLKP N+L+D+     ++DFG AK + G      +T  L  T  
Sbjct: 153 TFEYLH---SLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKG------RTWXLCGTPE 203
Query: 741 YMAPE 745
           Y+APE
Sbjct: 204 YLAPE 208

>pdb|1L3R|E Chain E, Crystal Structure Of A Transition State Mimic Of The Catalytic Subunit Of Camp-Dependent Protein Kinase Length = 350

Iteration: 1
 Score = 46.2 bits (108), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 38/65 (58%), Gaps = 10/65 (15%)
Query: 682 SLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTL-ATIG 740
           + EYLH   S+ +I+ DLKP N+L+D+     ++DFG AK + G      +T  L  T  
Sbjct: 153 TFEYLH---SLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKG------RTWXLCGTPE 203
Query: 741 YMAPE 745
           Y+APE
Sbjct: 204 YLAPE 208

>pdb|4E1Z|A Chain A, Structure Of Mouse Tyk-2 Complexed To A 3-Aminoindazole Inhibitor Length = 291

Iteration: 1
 Score = 45.8 bits (107), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 42/90 (46%), Gaps = 4/90 (4%)
Query: 675 LVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLL-SGEDQLSKQT 733
             + I   + YLH  H    IH  L   NVLLD D +  I DFG+AK +  G +    + 
Sbjct: 117 FAQQICEGMAYLHAQH---YIHRALAARNVLLDNDRLVKIGDFGLAKAVPEGHEYYRVRE 173
Query: 734 QTLATIGYMAPEYGTKGRVSTRGDVCSFGI 763
              + + + APE   + +     DV SFG+
Sbjct: 174 DGDSPVFWYAPECLKECKFYYASDVWSFGV 203

>pdb|3EKK|A Chain A, Insulin Receptor Kinase Complexed With An Inhibitor Length = 307

Iteration: 1
 Score = 45.8 bits (107), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLAT 738
           I+  + YL+   +   +H +L   N ++  D    I DFG+ + +   D   K  + L  
Sbjct: 140 IADGMAYLN---AKKFVHRNLAARNCMVAHDFTVKIGDFGMTRDIYETDYYRKGGKGLLP 196
Query: 739 IGYMAPEYGTKGRVSTRGDVCSFGII 764
           + +MAPE    G  +T  D+ SFG++
Sbjct: 197 VRWMAPESLKDGVFTTSSDMWSFGVV 222

>pdb|2QOO|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f:y742f Triple Mutant Length = 373

Iteration: 1
 Score = 45.8 bits (107), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 24/91 (26%), Positives = 53/91 (58%), Gaps = 4/91 (4%)
Query: 675 LVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQ 734
           +++ I+S ++YL     +  +H DL   N+L++ ++V  +SDFG++++L  + + +  T+
Sbjct: 152 MLRGIASGMKYLS---DMGFVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTTR 208
Query: 735 TLAT-IGYMAPEYGTKGRVSTRGDVCSFGII 764
                I + +PE     + ++  DV S+GI+
Sbjct: 209 GGKIPIRWTSPEAIAYRKFTSASDVWSYGIV 239

>pdb|3QAL|E Chain E, Crystal Structure Of Arg280ala Mutant Of Catalytic Subunit Of Camp- Dependent Protein Kinase Length = 350

Iteration: 1
 Score = 45.8 bits (107), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 38/65 (58%), Gaps = 10/65 (15%)
Query: 682 SLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTL-ATIG 740
           + EYLH   S+ +I+ DLKP N+L+D+     ++DFG AK + G      +T  L  T  
Sbjct: 153 TFEYLH---SLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKG------RTWXLCGTPE 203
Query: 741 YMAPE 745
           Y+APE
Sbjct: 204 YLAPE 208

>pdb|1CTP|E Chain E, Structure Of The Mammalian Catalytic Subunit Of Camp-Dependent Protein Kinase And An Inhibitor Peptide Displays An Open Conformation Length = 350

Iteration: 1
 Score = 45.8 bits (107), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 38/65 (58%), Gaps = 10/65 (15%)
Query: 682 SLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTL-ATIG 740
           + EYLH   S+ +I+ DLKP N+L+D+     ++DFG AK + G      +T  L  T  
Sbjct: 153 TFEYLH---SLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKG------RTWXLCGTPE 203
Query: 741 YMAPE 745
           Y+APE
Sbjct: 204 YLAPE 208

>pdb|1ZY4|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: R794g Hyperactivating Mutant In Apo Form. Length = 303

Iteration: 1
 Score = 45.8 bits (107), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 37/105 (35%), Positives = 48/105 (45%), Gaps = 21/105 (20%)
Query: 677 KIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAK--------------- 721
           ++    LE L + HS  IIH DLKP N+ +DE     I DFG+AK               
Sbjct: 120 RLFRQILEALSYIHSQGIIHRDLKPMNIFIDESRNVKIGDFGLAKNVHRSLDILKLDSQN 179
Query: 722 LLSGEDQLSKQTQTLATIGYMAPEY--GTKGRVSTRGDVCSFGII 764
           L    D L   T  + T  Y+A E   GT G  + + D+ S GII
Sbjct: 180 LPGSSDNL---TSAIGTAMYVATEVLDGT-GHYNEKIDMYSLGII 220

>pdb|3MPM|A Chain A, Lck Complexed With A Pyrazolopyrimidine Length = 267

Iteration: 1
 Score = 45.8 bits (107), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Query: 695 IHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVST 754
           IH +L+ +N+L+ + +   I+DFG+A+L+   +  +++      I + APE    G  + 
Sbjct: 127 IHRNLRAANILVSDTLSCKIADFGLARLIEDNEYTAREGAKFP-IKWTAPEAINYGTFTI 185
Query: 755 RGDVCSFGII 764
           + DV SFGI+
Sbjct: 186 KSDVWSFGIL 195

>pdb|2QUR|A Chain A, Crystal Structure Of F327aK285P MUTANT OF CAMP-Dependent Protein Kinase Length = 350

Iteration: 1
 Score = 45.8 bits (107), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 38/65 (58%), Gaps = 10/65 (15%)
Query: 682 SLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTL-ATIG 740
           + EYLH   S+ +I+ DLKP N+L+D+     ++DFG AK + G      +T  L  T  
Sbjct: 153 TFEYLH---SLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKG------RTWXLCGTPE 203
Query: 741 YMAPE 745
           Y+APE
Sbjct: 204 YLAPE 208

>pdb|4DFX|E Chain E, Crystal Structure Of Myristoylated K7c Catalytic Subunit Of Camp- Dependent Protein Kinase In Complex With Sp20 And Amp-Pnp Length = 350

Iteration: 1
 Score = 45.8 bits (107), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 38/65 (58%), Gaps = 10/65 (15%)
Query: 682 SLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTL-ATIG 740
           + EYLH   S+ +I+ DLKP N+L+D+     ++DFG AK + G      +T  L  T  
Sbjct: 153 TFEYLH---SLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKG------RTWXLCGTPE 203
Query: 741 YMAPE 745
           Y+APE
Sbjct: 204 YLAPE 208

>pdb|3AGM|A Chain A, Complex Of Pka With The Bisubstrate Protein Kinase Inhibitor Arc-670 Length = 351

Iteration: 1
 Score = 45.8 bits (107), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 38/65 (58%), Gaps = 10/65 (15%)
Query: 682 SLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTL-ATIG 740
           + EYLH   S+ +I+ DLKP N+L+D+     ++DFG AK + G      +T  L  T  
Sbjct: 154 TFEYLH---SLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKG------RTWXLCGTPE 204
Query: 741 YMAPE 745
           Y+APE
Sbjct: 205 YLAPE 209

>pdb|3AGL|A Chain A, Complex Of Pka With The Bisubstrate Protein Kinase Inhibitor Arc-1039 Length = 351

Iteration: 1
 Score = 45.8 bits (107), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 38/65 (58%), Gaps = 10/65 (15%)
Query: 682 SLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTL-ATIG 740
           + EYLH   S+ +I+ DLKP N+L+D+     ++DFG AK + G      +T  L  T  
Sbjct: 154 TFEYLH---SLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKG------RTWXLCGTPE 204
Query: 741 YMAPE 745
           Y+APE
Sbjct: 205 YLAPE 209

>pdb|2JDS|A Chain A, Structure Of Camp-Dependent Protein Kinase Complexed With A- 443654 Length = 351

Iteration: 1
 Score = 45.8 bits (107), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 38/65 (58%), Gaps = 10/65 (15%)
Query: 682 SLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTL-ATIG 740
           + EYLH   S+ +I+ DLKP N+L+D+     ++DFG AK + G      +T  L  T  
Sbjct: 154 TFEYLH---SLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKG------RTWXLCGTPE 204
Query: 741 YMAPE 745
           Y+APE
Sbjct: 205 YLAPE 209

>pdb|1SVH|A Chain A, Crystal Structure Of Protein Kinase A In Complex With Azepane Derivative 8 Length = 350

Iteration: 1
 Score = 45.8 bits (107), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 38/65 (58%), Gaps = 10/65 (15%)
Query: 682 SLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTL-ATIG 740
           + EYLH   S+ +I+ DLKP N+L+D+     ++DFG AK + G      +T  L  T  
Sbjct: 153 TFEYLH---SLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKG------RTWXLCGTPE 203
Query: 741 YMAPE 745
           Y+APE
Sbjct: 204 YLAPE 208

>pdb|1Q8W|A Chain A, The Catalytic Subunit Of Camp-Dependent Protein Kinase In Complex With Rho-Kinase Inhibitor Fasudil (Ha-1077) Length = 350

Iteration: 1
 Score = 45.8 bits (107), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 38/65 (58%), Gaps = 10/65 (15%)
Query: 682 SLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTL-ATIG 740
           + EYLH   S+ +I+ DLKP N+L+D+     ++DFG AK + G      +T  L  T  
Sbjct: 153 TFEYLH---SLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKG------RTWXLCGTPE 203
Query: 741 YMAPE 745
           Y+APE
Sbjct: 204 YLAPE 208

>pdb|1STC|E Chain E, Camp-Dependent Protein Kinase, Alpha-Catalytic Subunit In Complex With Staurosporine Length = 350

Iteration: 1
 Score = 45.8 bits (107), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 38/65 (58%), Gaps = 10/65 (15%)
Query: 682 SLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTL-ATIG 740
           + EYLH   S+ +I+ DLKP N+L+D+     ++DFG AK + G      +T  L  T  
Sbjct: 153 TFEYLH---SLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKG------RTWXLCGTPE 203
Query: 741 YMAPE 745
           Y+APE
Sbjct: 204 YLAPE 208

>pdb|4DG3|E Chain E, Crystal Structure Of R336a Mutant Of Camp-dependent Protein Kinase With Unphosphorylated Turn Motif Length = 371

Iteration: 1
 Score = 45.8 bits (107), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 38/65 (58%), Gaps = 10/65 (15%)
Query: 682 SLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTL-ATIG 740
           + EYLH   S+ +I+ DLKP N+L+D+     ++DFG AK + G      +T  L  T  
Sbjct: 174 TFEYLH---SLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKG------RTWXLCGTPE 224
Query: 741 YMAPE 745
           Y+APE
Sbjct: 225 YLAPE 229

>pdb|3NX8|A Chain A, Human Camp Dependent Protein Kinase In Complex With Phenol Length = 351

Iteration: 1
 Score = 45.8 bits (107), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 38/65 (58%), Gaps = 10/65 (15%)
Query: 682 SLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTL-ATIG 740
           + EYLH   S+ +I+ DLKP N+L+D+     ++DFG AK + G      +T  L  T  
Sbjct: 154 TFEYLH---SLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKG------RTWXLCGTPE 204
Query: 741 YMAPE 745
           Y+APE
Sbjct: 205 YLAPE 209

>pdb|1CDK|A Chain A, Camp-Dependent Protein Kinase Catalytic Subunit (E.C.2.7.1.37) (Protein Kinase A) Complexed With Protein Kinase Inhibitor Peptide Fragment 5-24 (Pki(5-24) Isoelectric Variant Ca) And Mn2+ Adenylyl Imidodiphosphate (Mnamp-Pnp) At Ph 5.6 And 7c And 4c Length = 350

Iteration: 1
 Score = 45.8 bits (107), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 38/65 (58%), Gaps = 10/65 (15%)
Query: 682 SLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTL-ATIG 740
           + EYLH   S+ +I+ DLKP N+L+D+     ++DFG AK + G      +T  L  T  
Sbjct: 153 TFEYLH---SLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKG------RTWXLCGTPE 203
Query: 741 YMAPE 745
           Y+APE
Sbjct: 204 YLAPE 208

>pdb|2C1A|A Chain A, Structure Of Camp-Dependent Protein Kinase Complexed With Isoquinoline-5-Sulfonic Acid (2-(2-(4-Chlorobenzyloxy) Ethylamino)ethyl)amide Length = 351

Iteration: 1
 Score = 45.8 bits (107), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 38/65 (58%), Gaps = 10/65 (15%)
Query: 682 SLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTL-ATIG 740
           + EYLH   S+ +I+ DLKP N+L+D+     ++DFG AK + G      +T  L  T  
Sbjct: 154 TFEYLH---SLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKG------RTWXLCGTPE 204
Query: 741 YMAPE 745
           Y+APE
Sbjct: 205 YLAPE 209

>pdb|1CMK|E Chain E, Crystal Structures Of The Myristylated Catalytic Subunit Of Camp- Dependent Protein Kinase Reveal Open And Closed Conformations Length = 350

Iteration: 1
 Score = 45.8 bits (107), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 38/65 (58%), Gaps = 10/65 (15%)
Query: 682 SLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTL-ATIG 740
           + EYLH   S+ +I+ DLKP N+L+D+     ++DFG AK + G      +T  L  T  
Sbjct: 153 TFEYLH---SLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKG------RTWXLCGTPE 203
Query: 741 YMAPE 745
           Y+APE
Sbjct: 204 YLAPE 208

>pdb|1YDT|E Chain E, Structure Of Camp-Dependent Protein Kinase, Alpha-Catalytic Subunit In Complex With H89 Protein Kinase Inhibitor N-[2- (4-Bromocinnamylamino)ethyl]-5-Isoquinoline Length = 350

Iteration: 1
 Score = 45.8 bits (107), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 38/65 (58%), Gaps = 10/65 (15%)
Query: 682 SLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTL-ATIG 740
           + EYLH   S+ +I+ DLKP N+L+D+     ++DFG AK + G      +T  L  T  
Sbjct: 153 TFEYLH---SLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKG------RTWXLCGTPE 203
Query: 741 YMAPE 745
           Y+APE
Sbjct: 204 YLAPE 208

>pdb|3DND|A Chain A, Camp-Dependent Protein Kinase Pka Catalytic Subunit With Pki-5-24 Length = 350

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 38/65 (58%), Gaps = 10/65 (15%)
Query: 682 SLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTL-ATIG 740
           + EYLH   S+ +I+ DLKP N+L+D+     ++DFG AK + G      +T  L  T  
Sbjct: 153 TFEYLH---SLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKG------RTWXLCGTPE 203
Query: 741 YMAPE 745
           Y+APE
Sbjct: 204 YLAPE 208

>pdb|1XH7|A Chain A, Crystal Structures Of Protein Kinase B Selective Inhibitors In Complex With Protein Kinase A And Mutants Length = 350

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 38/65 (58%), Gaps = 10/65 (15%)
Query: 682 SLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTL-ATIG 740
           + EYLH   S+ +I+ DLKP N+L+D+     ++DFG AK + G      +T  L  T  
Sbjct: 153 TFEYLH---SLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKG------RTWXLCGTPE 203
Query: 741 YMAPE 745
           Y+APE
Sbjct: 204 YLAPE 208

>pdb|4AE6|A Chain A, Structure And Function Of The Human Sperm-specific Isoform Of Protein Kinase A (pka) Catalytic Subunit Calpha 2 Length = 343

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 38/65 (58%), Gaps = 10/65 (15%)
Query: 682 SLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTL-ATIG 740
           + EYLH   S+ +I+ DLKP N+L+D+     ++DFG AK + G      +T  L  T  
Sbjct: 146 TFEYLH---SLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKG------RTWXLCGTPE 196
Query: 741 YMAPE 745
           Y+APE
Sbjct: 197 YLAPE 201

>pdb|4AE9|A Chain A, Structure And Function Of The Human Sperm-specific Isoform Of Protein Kinase A (pka) Catalytic Subunit C Alpha 2 Length = 343

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 38/65 (58%), Gaps = 10/65 (15%)
Query: 682 SLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTL-ATIG 740
           + EYLH   S+ +I+ DLKP N+L+D+     ++DFG AK + G      +T  L  T  
Sbjct: 146 TFEYLH---SLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKG------RTWXLCGTPE 196
Query: 741 YMAPE 745
           Y+APE
Sbjct: 197 YLAPE 201

>pdb|3MVJ|A Chain A, Human Cyclic Amp-Dependent Protein Kinase Pka Inhibitor Complex Length = 371

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 38/65 (58%), Gaps = 10/65 (15%)
Query: 682 SLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTL-ATIG 740
           + EYLH   S+ +I+ DLKP N+L+D+     ++DFG AK + G      +T  L  T  
Sbjct: 174 TFEYLH---SLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKG------RTWXLCGTPE 224
Query: 741 YMAPE 745
           Y+APE
Sbjct: 225 YLAPE 229

>pdb|2WQB|A Chain A, Structure Of The Tie2 Kinase Domain In Complex With A Thiazolopyrimidine Inhibitor Length = 324

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/148 (29%), Positives = 64/148 (43%), Gaps = 28/148 (18%)
Query: 681 SSLEYLHFGHSIP----------IIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLS 730
           SS + LHF   +            IH +L   N+L+ E+ VA I+DFG+++   G++   
Sbjct: 137 SSQQLLHFAADVARGMDYLSQKQFIHRNLAARNILVGENYVAKIADFGLSR---GQEVYV 193
Query: 731 KQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII------SGGKETRSMTVGETCTPVRE 784
           K+T     + +MA E       +T  DV S+G++       GG     MT  E       
Sbjct: 194 KKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTCAEL------ 247
Query: 785 SKYEVHPATTTIMEHPLPRVGEVMDVDR 812
             YE  P     +E PL    EV D+ R
Sbjct: 248 --YEKLPQGYR-LEKPLNCDDEVYDLMR 272

>pdb|2OU7|A Chain A, Structure Of The Catalytic Domain Of Human Polo-Like Kinase 1 Length = 335

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 58/122 (47%), Gaps = 10/122 (8%)
Query: 673 RNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQ 732
           R  ++ I    +YLH      +IH DLK  N+ L+ED+   I DFG+A  +  + +  ++
Sbjct: 144 RYYLRQIVLGCQYLHRNR---VIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYDGE--RK 198
Query: 733 TQTLATIGYMAPEYGTKGRVSTRGDVCSFGIIS-----GGKETRSMTVGETCTPVRESKY 787
                T  Y+APE  +K   S   DV S G I      G     +  + ET   +++++Y
Sbjct: 199 KVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCLKETYLRIKKNEY 258
Query: 788 EV 789
            +
Sbjct: 259 SI 260

>pdb|3THB|A Chain A, Structure Of Plk1 Kinase Domain In Complex With A Benzolactam-Derived Inhibitor Length = 333

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 58/122 (47%), Gaps = 10/122 (8%)
Query: 673 RNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQ 732
           R  ++ I    +YLH      +IH DLK  N+ L+ED+   I DFG+A  +  + +  ++
Sbjct: 142 RYYLRQIVLGCQYLHRNR---VIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYDGE--RK 196
Query: 733 TQTLATIGYMAPEYGTKGRVSTRGDVCSFGIIS-----GGKETRSMTVGETCTPVRESKY 787
                T  Y+APE  +K   S   DV S G I      G     +  + ET   +++++Y
Sbjct: 197 KVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCLKETYLRIKKNEY 256
Query: 788 EV 789
            +
Sbjct: 257 SI 258

>pdb|1R0P|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The Hepatocyte Growth Factor Receptor C-Met In Complex With The Microbial Alkaloid K-252a Length = 312

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 2/88 (2%)
Query: 686 LHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGE--DQLSKQTQTLATIGYMA 743
           + F  S   +H DL   N +LDE     ++DFG+A+ +  +  D +  +T     + +MA
Sbjct: 144 MKFLASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGAKLPVKWMA 203
Query: 744 PEYGTKGRVSTRGDVCSFGIISGGKETR 771
            E     + +T+ DV SFG++     TR
Sbjct: 204 LESLQTQKFTTKSDVWSFGVLLWELMTR 231

>pdb|4ASZ|A Chain A, Crystal Structure Of Apo Trkb Kinase Domain Length = 299

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 3/91 (3%)
Query: 674 NLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQT 733
           ++ + I++ + YL   H    +H DL   N L+ E+++  I DFG+++ +   D      
Sbjct: 132 HIAQQIAAGMVYLASQH---FVHRDLATRNCLVGENLLVKIGDFGMSRDVYSTDYYRVGG 188
Query: 734 QTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
            T+  I +M PE     + +T  DV S G++
Sbjct: 189 HTMLPIRWMPPESIMYRKFTTESDVWSLGVV 219

>pdb|3CIK|A Chain A, Human Grk2 In Complex With Gbetagamma Subunits Length = 689

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 36/61 (59%), Gaps = 4/61 (6%)
Query: 690 HSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTK 749
           H+  +++ DLKP+N+LLDE     ISD G+A   S +    K   ++ T GYMAPE   K
Sbjct: 309 HNRFVVYRDLKPANILLDEHGHVRISDLGLACDFSKK----KPHASVGTHGYMAPEVLQK 364
Query: 750 G 750
           G
Sbjct: 365 G 365

>pdb|3KRW|A Chain A, Human Grk2 In Complex With Gbetgamma Subunits And Balanol (Soak) Length = 688

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 36/61 (59%), Gaps = 4/61 (6%)
Query: 690 HSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTK 749
           H+  +++ DLKP+N+LLDE     ISD G+A   S +    K   ++ T GYMAPE   K
Sbjct: 308 HNRFVVYRDLKPANILLDEHGHVRISDLGLACDFSKK----KPHASVGTHGYMAPEVLQK 363
Query: 750 G 750
           G
Sbjct: 364 G 364

>pdb|3DZQ|A Chain A, Human Epha3 Kinase Domain In Complex With Inhibitor Awl-Ii- 38.3 Length = 361

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/91 (26%), Positives = 53/91 (58%), Gaps = 4/91 (4%)
Query: 675 LVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQ 734
           +++ I+S ++YL     +  +H DL   N+L++ ++V  +SDFG++++L  + + +  T+
Sbjct: 140 MLRGIASGMKYLS---DMGYVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTTR 196
Query: 735 TLAT-IGYMAPEYGTKGRVSTRGDVCSFGII 764
                I + +PE     + ++  DV S+GI+
Sbjct: 197 GGKIPIRWTSPEAIAYRKFTSASDVWSYGIV 227

>pdb|3CTH|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The Hepatocyte Growth Factor Receptor C-Met In Complex With A Aminopyridine Based Inhibitor Length = 314

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 2/88 (2%)
Query: 686 LHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGE--DQLSKQTQTLATIGYMA 743
           + F  S   +H DL   N +LDE     ++DFG+A+ +  +  D +  +T     + +MA
Sbjct: 146 MKFLASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGAKLPVKWMA 205
Query: 744 PEYGTKGRVSTRGDVCSFGIISGGKETR 771
            E     + +T+ DV SFG++     TR
Sbjct: 206 LESLQTQKFTTKSDVWSFGVLLWELMTR 233

>pdb|2QOB|A Chain A, Human Epha3 Kinase Domain, Base Structure Length = 344

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/91 (26%), Positives = 53/91 (58%), Gaps = 4/91 (4%)
Query: 675 LVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQ 734
           +++ I+S ++YL     +  +H DL   N+L++ ++V  +SDFG++++L  + + +  T+
Sbjct: 123 MLRGIASGMKYLS---DMGYVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTTR 179
Query: 735 TLAT-IGYMAPEYGTKGRVSTRGDVCSFGII 764
                I + +PE     + ++  DV S+GI+
Sbjct: 180 GGKIPIRWTSPEAIAYRKFTSASDVWSYGIV 210

>pdb|3MH2|A Chain A, Mutagenesis Of P38 Map Kinase Establishes Key Roles Of Phe169 In Function And Structural Dynamics And Reveals A Novel Dfg-Out State Length = 360

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 678 IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLA 737
           +I   L  L + HS  IIH DLKPSN+ ++ED    I D+G+A+    E      T  +A
Sbjct: 130 LIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDYGLARHTDDE-----MTGYVA 184
Query: 738 TIGYMAPE 745
           T  Y APE
Sbjct: 185 TRWYRAPE 192

>pdb|1OMW|A Chain A, Crystal Structure Of The Complex Between G Protein-Coupled Receptor Kinase 2 And Heterotrimeric G Protein Beta 1 And Gamma 2 Subunits Length = 689

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 36/61 (59%), Gaps = 4/61 (6%)
Query: 690 HSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTK 749
           H+  +++ DLKP+N+LLDE     ISD G+A   S +    K   ++ T GYMAPE   K
Sbjct: 309 HNRFVVYRDLKPANILLDEHGHVRISDLGLACDFSKK----KPHASVGTHGYMAPEVLQK 364
Query: 750 G 750
           G
Sbjct: 365 G 365

>pdb|3PSC|A Chain A, Bovine Grk2 In Complex With Gbetagamma Subunits Length = 695

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 36/61 (59%), Gaps = 4/61 (6%)
Query: 690 HSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTK 749
           H+  +++ DLKP+N+LLDE     ISD G+A   S +    K   ++ T GYMAPE   K
Sbjct: 309 HNRFVVYRDLKPANILLDEHGHVRISDLGLACDFSKK----KPHASVGTHGYMAPEVLQK 364
Query: 750 G 750
           G
Sbjct: 365 G 365

>pdb|2QOI|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f Double Mutant Length = 373

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/91 (26%), Positives = 53/91 (58%), Gaps = 4/91 (4%)
Query: 675 LVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQ 734
           +++ I+S ++YL     +  +H DL   N+L++ ++V  +SDFG++++L  + + +  T+
Sbjct: 152 MLRGIASGMKYLS---DMGYVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTTR 208
Query: 735 TLAT-IGYMAPEYGTKGRVSTRGDVCSFGII 764
                I + +PE     + ++  DV S+GI+
Sbjct: 209 GGKIPIRWTSPEAIAYRKFTSASDVWSYGIV 239

>pdb|3AMA|A Chain A, Protein Kinase A Sixfold Mutant Model Of Aurora B With Inhibitor Jnj- 7706621 Length = 351

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 38/65 (58%), Gaps = 10/65 (15%)
Query: 682 SLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTL-ATIG 740
           + EYLH   S+ +I+ DLKP N+L+D+     ++DFG AK + G      +T  L  T  
Sbjct: 154 TFEYLH---SLDLIYRDLKPENLLIDQQGYIKVADFGFAKRVKG------RTWXLCGTPE 204
Query: 741 YMAPE 745
           Y+APE
Sbjct: 205 YLAPE 209

>pdb|2QOC|A Chain A, Human Epha3 Kinase Domain, Phosphorylated, Amp-Pnp Bound Structure Length = 344

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/91 (26%), Positives = 53/91 (58%), Gaps = 4/91 (4%)
Query: 675 LVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQ 734
           +++ I+S ++YL     +  +H DL   N+L++ ++V  +SDFG++++L  + + +  T+
Sbjct: 123 MLRGIASGMKYLS---DMGYVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTTR 179
Query: 735 TLAT-IGYMAPEYGTKGRVSTRGDVCSFGII 764
                I + +PE     + ++  DV S+GI+
Sbjct: 180 GGKIPIRWTSPEAIAYRKFTSASDVWSYGIV 210

>pdb|4GT5|A Chain A, Crystal Structure Of The Inactive Trka Kinase Domain Length = 306

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/187 (20%), Positives = 69/187 (36%), Gaps = 55/187 (29%)
Query: 633 NNLIGIGNGMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVKIISSS---------L 683
           +NL+   + M VAVK   +  E A + F+ E E+   ++H+++V+               
Sbjct: 40  HNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRFFGVCTEGRPLLMVF 99
Query: 684 EYLHFGH----------------------------------------------SIPIIHC 697
           EY+  G                                                +  +H 
Sbjct: 100 EYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLAGLHFVHR 159
Query: 698 DLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGD 757
           DL   N L+ + +V  I DFG+++ +   D      +T+  I +M PE     + +T  D
Sbjct: 160 DLATRNCLVGQGLVVKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESD 219
Query: 758 VCSFGII 764
           V SFG++
Sbjct: 220 VWSFGVV 226

>pdb|3DKC|A Chain A, Sgx Clone 5698a65kfg1h1 Length = 317

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 686 LHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGE--DQLSKQTQTLATIGYMA 743
           + F  S   +H DL   N +LDE     ++DFG+A+ +  +  D +  +T     + +MA
Sbjct: 147 MKFLASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGAKLPVKWMA 206
Query: 744 PEYGTKGRVSTRGDVCSFGII 764
            E     + +T+ DV SFG++
Sbjct: 207 LESLQTQKFTTKSDVWSFGVL 227

>pdb|4AOJ|A Chain A, Human Trka In Complex With The Inhibitor Az-23 Length = 329

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/187 (20%), Positives = 69/187 (36%), Gaps = 55/187 (29%)
Query: 633 NNLIGIGNGMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVKIISSS---------L 683
           +NL+   + M VAVK   +  E A + F+ E E+   ++H+++V+               
Sbjct: 63  HNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRFFGVCTEGRPLLMVF 122
Query: 684 EYLHFGH----------------------------------------------SIPIIHC 697
           EY+  G                                                +  +H 
Sbjct: 123 EYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLAGLHFVHR 182
Query: 698 DLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGD 757
           DL   N L+ + +V  I DFG+++ +   D      +T+  I +M PE     + +T  D
Sbjct: 183 DLATRNCLVGQGLVVKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESD 242
Query: 758 VCSFGII 764
           V SFG++
Sbjct: 243 VWSFGVV 249

>pdb|2GNJ|A Chain A, Pka Three Fold Mutant Model Of Rho-Kinase With Y-27632 Length = 350

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 38/65 (58%), Gaps = 10/65 (15%)
Query: 682 SLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTL-ATIG 740
           + EYLH   S+ +I+ DLKP N+L+D+     ++DFG AK + G      +T  L  T  
Sbjct: 153 TFEYLH---SLDLIYRDLKPENLLIDQQGYIKVADFGFAKRVKG------RTWXLCGTPE 203
Query: 741 YMAPE 745
           Y+APE
Sbjct: 204 YLAPE 208

>pdb|1SMH|A Chain A, Protein Kinase A Variant Complex With Completely Ordered N- Terminal Helix Length = 350

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 39/65 (60%), Gaps = 10/65 (15%)
Query: 682 SLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTL-ATIG 740
           + EYLH   S+ +I+ DLKP N+++D+     ++DFG+AK + G      +T  L  T  
Sbjct: 153 TFEYLH---SLDLIYRDLKPENLMIDQQGYIQVTDFGLAKRVKG------RTWXLCGTPE 203
Query: 741 YMAPE 745
           Y+APE
Sbjct: 204 YLAPE 208

>pdb|2VWU|A Chain A, Ephb4 Kinase Domain Inhibitor Complex Length = 302

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/93 (26%), Positives = 49/93 (52%), Gaps = 6/93 (6%)
Query: 675 LVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQ 734
           +++ I+S + YL     +  +H DL   N+L++ ++V  +SDFG+++ L        +T 
Sbjct: 123 MLRGIASGMRYLA---EMSYVHRDLAARNILVNSNLVCKVSDFGLSRFLEENSSDPTETS 179
Query: 735 TLA---TIGYMAPEYGTKGRVSTRGDVCSFGII 764
           +L     I + APE     + ++  D  S+GI+
Sbjct: 180 SLGGKIPIRWTAPEAIAFRKFTSASDAWSYGIV 212

>pdb|3A4P|A Chain A, Human C-Met Kinase Domain Complexed With 6-Benzyloxyquinoline Inhibitor Length = 319

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 2/88 (2%)
Query: 686 LHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGE--DQLSKQTQTLATIGYMA 743
           + F  S   +H DL   N +LDE     ++DFG+A+ +  +  D +  +T     + +MA
Sbjct: 151 MKFLASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGAKLPVKWMA 210
Query: 744 PEYGTKGRVSTRGDVCSFGIISGGKETR 771
            E     + +T+ DV SFG++     TR
Sbjct: 211 LESLQTQKFTTKSDVWSFGVLLWELMTR 238

>pdb|2QON|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f:y742a Triple Mutant Length = 373

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/91 (26%), Positives = 53/91 (58%), Gaps = 4/91 (4%)
Query: 675 LVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQ 734
           +++ I+S ++YL     +  +H DL   N+L++ ++V  +SDFG++++L  + + +  T+
Sbjct: 152 MLRGIASGMKYLS---DMGAVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTTR 208
Query: 735 TLAT-IGYMAPEYGTKGRVSTRGDVCSFGII 764
                I + +PE     + ++  DV S+GI+
Sbjct: 209 GGKIPIRWTSPEAIAYRKFTSASDVWSYGIV 239

>pdb|2QO7|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Dephosphorylated, Amp-Pnp Bound Length = 373

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/91 (26%), Positives = 53/91 (58%), Gaps = 4/91 (4%)
Query: 675 LVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQ 734
           +++ I+S ++YL     +  +H DL   N+L++ ++V  +SDFG++++L  + + +  T+
Sbjct: 152 MLRGIASGMKYLS---DMGYVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTTR 208
Query: 735 TLAT-IGYMAPEYGTKGRVSTRGDVCSFGII 764
                I + +PE     + ++  DV S+GI+
Sbjct: 209 GGKIPIRWTSPEAIAYRKFTSASDVWSYGIV 239

>pdb|2QOF|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f Mutant Length = 373

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/91 (26%), Positives = 53/91 (58%), Gaps = 4/91 (4%)
Query: 675 LVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQ 734
           +++ I+S ++YL     +  +H DL   N+L++ ++V  +SDFG++++L  + + +  T+
Sbjct: 152 MLRGIASGMKYLS---DMGYVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTTR 208
Query: 735 TLAT-IGYMAPEYGTKGRVSTRGDVCSFGII 764
                I + +PE     + ++  DV S+GI+
Sbjct: 209 GGKIPIRWTSPEAIAYRKFTSASDVWSYGIV 239

>pdb|2QOD|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y602f Mutant Length = 373

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/91 (26%), Positives = 53/91 (58%), Gaps = 4/91 (4%)
Query: 675 LVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQ 734
           +++ I+S ++YL     +  +H DL   N+L++ ++V  +SDFG++++L  + + +  T+
Sbjct: 152 MLRGIASGMKYLS---DMGYVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTTR 208
Query: 735 TLAT-IGYMAPEYGTKGRVSTRGDVCSFGII 764
                I + +PE     + ++  DV S+GI+
Sbjct: 209 GGKIPIRWTSPEAIAYRKFTSASDVWSYGIV 239

>pdb|2QOL|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596:y602:s768g Triple Mutant Length = 373

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/91 (26%), Positives = 52/91 (57%), Gaps = 4/91 (4%)
Query: 675 LVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQ 734
           +++ I+S ++YL     +  +H DL   N+L++ ++V  +SDFG+ ++L  + + +  T+
Sbjct: 152 MLRGIASGMKYLS---DMGYVHRDLAARNILINSNLVCKVSDFGLGRVLEDDPEAAYTTR 208
Query: 735 TLAT-IGYMAPEYGTKGRVSTRGDVCSFGII 764
                I + +PE     + ++  DV S+GI+
Sbjct: 209 GGKIPIRWTSPEAIAYRKFTSASDVWSYGIV 239

>pdb|2GNG|A Chain A, Protein Kinase A Fivefold Mutant Model Of Rho-Kinase Length = 350

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 38/65 (58%), Gaps = 10/65 (15%)
Query: 682 SLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTL-ATIG 740
           + EYLH   S+ +I+ DLKP N+L+D+     ++DFG AK + G      +T  L  T  
Sbjct: 153 TFEYLH---SLDLIYRDLKPENLLIDQQGYIKVADFGFAKRVKG------RTWXLCGTPE 203
Query: 741 YMAPE 745
           Y+APE
Sbjct: 204 YLAPE 208

>pdb|2GNF|A Chain A, Protein Kinase A Fivefold Mutant Model Of Rho-Kinase With Y- 27632 Length = 350

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 38/65 (58%), Gaps = 10/65 (15%)
Query: 682 SLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTL-ATIG 740
           + EYLH   S+ +I+ DLKP N+L+D+     ++DFG AK + G      +T  L  T  
Sbjct: 153 TFEYLH---SLDLIYRDLKPENLLIDQQGYIKVADFGFAKRVKG------RTWXLCGTPE 203
Query: 741 YMAPE 745
           Y+APE
Sbjct: 204 YLAPE 208

>pdb|4F0I|A Chain A, Crystal Structure Of Apo Trka Length = 300

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/187 (20%), Positives = 69/187 (36%), Gaps = 55/187 (29%)
Query: 633 NNLIGIGNGMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVKIISSS---------L 683
           +NL+   + M VAVK   +  E A + F+ E E+   ++H+++V+               
Sbjct: 34  HNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRFFGVCTEGRPLLMVF 93
Query: 684 EYLHFGH----------------------------------------------SIPIIHC 697
           EY+  G                                                +  +H 
Sbjct: 94  EYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLAGLHFVHR 153
Query: 698 DLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGD 757
           DL   N L+ + +V  I DFG+++ +   D      +T+  I +M PE     + +T  D
Sbjct: 154 DLATRNCLVGQGLVVKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESD 213
Query: 758 VCSFGII 764
           V SFG++
Sbjct: 214 VWSFGVV 220

>pdb|3FXX|A Chain A, Human Epha3 Kinase And Juxtamembrane Region Bound To Substrate Kqwdnye[ptyr]iw Length = 371

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/91 (26%), Positives = 53/91 (58%), Gaps = 4/91 (4%)
Query: 675 LVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQ 734
           +++ I+S ++YL     +  +H DL   N+L++ ++V  +SDFG++++L  + + +  T+
Sbjct: 150 MLRGIASGMKYLS---DMGYVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTTR 206
Query: 735 TLAT-IGYMAPEYGTKGRVSTRGDVCSFGII 764
                I + +PE     + ++  DV S+GI+
Sbjct: 207 GGKIPIRWTSPEAIAYRKFTSASDVWSYGIV 237

>pdb|2JED|A Chain A, The Crystal Structure Of The Kinase Domain Of The Protein Kinase C Theta In Complex With Nvp-Xaa228 At 2.32a Resolution. Length = 352

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/81 (37%), Positives = 44/81 (54%), Gaps = 6/81 (7%)
Query: 686 LHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQL--SKQTQTLATIGYMA 743
           L F HS  I++ DLK  N+LLD+D    I+DFG+ K    E+ L  +K  +   T  Y+A
Sbjct: 132 LQFLHSKGIVYRDLKLDNILLDKDGHIKIADFGMCK----ENMLGDAKTNEFCGTPDYIA 187
Query: 744 PEYGTKGRVSTRGDVCSFGII 764
           PE     + +   D  SFG++
Sbjct: 188 PEILLGQKYNHSVDWWSFGVL 208

>pdb|3QTI|A Chain A, C-Met Kinase In Complex With Nvp-Bvu972 Length = 314

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 686 LHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGE--DQLSKQTQTLATIGYMA 743
           + F  S   +H DL   N +LDE     ++DFG+A+ +  +  D +  +T     + +MA
Sbjct: 146 MKFLASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGAKLPVKWMA 205
Query: 744 PEYGTKGRVSTRGDVCSFGII 764
            E     + +T+ DV SFG++
Sbjct: 206 LESLQTQKFTTKSDVWSFGVL 226

>pdb|2RKU|A Chain A, Structure Of Plk1 In Complex With Bi2536 Length = 294

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 58/122 (47%), Gaps = 10/122 (8%)
Query: 673 RNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQ 732
           R  ++ I    +YLH      +IH DLK  N+ L+ED+   I DFG+A  +  + +  ++
Sbjct: 118 RYYLRQIVLGCQYLHRNR---VIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYDGE--RK 172
Query: 733 TQTLATIGYMAPEYGTKGRVSTRGDVCSFGIIS-----GGKETRSMTVGETCTPVRESKY 787
                T  Y+APE  +K   S   DV S G I      G     +  + ET   +++++Y
Sbjct: 173 KVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCLKETYLRIKKNEY 232
Query: 788 EV 789
            +
Sbjct: 233 SI 234

>pdb|3C1X|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The Hepatocyte Growth Factor Receptor C-Met In Complex With A Pyrrolotriazine Based Inhibitor Length = 373

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 686 LHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGE--DQLSKQTQTLATIGYMA 743
           + F  S   +H DL   N +LDE     ++DFG+A+ +  +  D +  +T     + +MA
Sbjct: 205 MKFLASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGAKLPVKWMA 264
Query: 744 PEYGTKGRVSTRGDVCSFGII 764
            E     + +T+ DV SFG++
Sbjct: 265 LESLQTQKFTTKSDVWSFGVL 285

>pdb|2GSF|A Chain A, The Human Epha3 Receptor Tyrosine Kinase And Juxtamembrane Region Length = 373

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/91 (26%), Positives = 53/91 (58%), Gaps = 4/91 (4%)
Query: 675 LVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQ 734
           +++ I+S ++YL     +  +H DL   N+L++ ++V  +SDFG++++L  + + +  T+
Sbjct: 152 MLRGIASGMKYLS---DMGYVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTTR 208
Query: 735 TLAT-IGYMAPEYGTKGRVSTRGDVCSFGII 764
                I + +PE     + ++  DV S+GI+
Sbjct: 209 GGKIPIRWTSPEAIAYRKFTSASDVWSYGIV 239

>pdb|3ZUV|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 364

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 66/143 (46%), Gaps = 9/143 (6%)
Query: 629 RFSENNLIGIGNGMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNL-----VKIISSSL 683
           RF   N+IGI +   +      Q  +  +     E ++ K ++ ++L        +   L
Sbjct: 81  RFRHENIIGINDI--IRAPTIEQMKDVYIVQDLMETDLYKLLKTQHLSNDHICYFLYQIL 138
Query: 684 EYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGE-DQLSKQTQTLATIGYM 742
             L + HS  ++H DLKPSN+LL+      I DFG+A++   + D      + +AT  Y 
Sbjct: 139 RGLKYIHSANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLXEXVATRWYR 198
Query: 743 APEYGTKGRVSTRG-DVCSFGII 764
           APE     +  T+  D+ S G I
Sbjct: 199 APEIMLNSKGYTKSIDIWSVGCI 221

>pdb|2ERK|A Chain A, Phosphorylated Map Kinase Erk2 Length = 365

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 66/143 (46%), Gaps = 9/143 (6%)
Query: 629 RFSENNLIGIGNGMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNL-----VKIISSSL 683
           RF   N+IGI +   +      Q  +  +     E ++ K ++ ++L        +   L
Sbjct: 82  RFRHENIIGINDI--IRAPTIEQMKDVYIVQDLMETDLYKLLKTQHLSNDHICYFLYQIL 139
Query: 684 EYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGE-DQLSKQTQTLATIGYM 742
             L + HS  ++H DLKPSN+LL+      I DFG+A++   + D      + +AT  Y 
Sbjct: 140 RGLKYIHSANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLXEXVATRWYR 199
Query: 743 APEYGTKGRVSTRG-DVCSFGII 764
           APE     +  T+  D+ S G I
Sbjct: 200 APEIMLNSKGYTKSIDIWSVGCI 222

>pdb|3VUM|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M7 In Map Kinase Jnk1 Length = 370

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/151 (31%), Positives = 68/151 (45%), Gaps = 34/151 (22%)
Query: 633 NNLIGIGNGMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVKIISSSLE-----YLH 687
            N+IG+ N       VF  Q  ++L+ F+D   +   +   NL ++I   L+     YL 
Sbjct: 83  KNIIGLLN-------VFTPQ--KSLEEFQD-VYIVMELMDANLSQVIQMELDHERMSYLL 132
Query: 688 FG--------HSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATI 739
           +         HS  IIH DLKPSN+++  D    I DFG+A+       +   T  + T 
Sbjct: 133 YQMLVGIKHLHSAGIIHRDLKPSNIVVKSDATLKILDFGLARTAGTSFMM---TPYVVTR 189
Query: 740 GYMAPE----YGTKGRVSTRGDVCSFGIISG 766
            Y APE     G K  V    D+ S G+I G
Sbjct: 190 YYRAPEVILGMGYKENV----DIWSVGVIMG 216

>pdb|2F57|A Chain A, Crystal Structure Of The Human P21-activated Kinase 5 Length = 317

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 48/96 (50%), Gaps = 2/96 (2%)
Query: 669 RIRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQ 728
           R+    +  +  S L  L + H+  +IH D+K  ++LL  D    +SDFG    +S E  
Sbjct: 137 RMNEEQIATVCLSVLRALSYLHNQGVIHRDIKSDSILLTSDGRIKLSDFGFCAQVSKE-- 194
Query: 729 LSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
           + K+   + T  +MAPE  ++    T  D+ S GI+
Sbjct: 195 VPKRKXLVGTPYWMAPEVISRLPYGTEVDIWSLGIM 230

>pdb|1U59|A Chain A, Crystal Structure Of The Zap-70 Kinase Domain In Complex With Staurosporine Length = 287

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 4/91 (4%)
Query: 674 NLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQ-LSKQ 732
            L+  +S  ++YL   +    +H DL   NVLL     A ISDFG++K L  +D   + +
Sbjct: 114 ELLHQVSMGMKYLEEKN---FVHRDLAARNVLLVNRHYAKISDFGLSKALGADDSYYTAR 170
Query: 733 TQTLATIGYMAPEYGTKGRVSTRGDVCSFGI 763
           +     + + APE     + S+R DV S+G+
Sbjct: 171 SAGKWPLKWYAPECINFRKFSSRSDVWSYGV 201

>pdb|1RJB|A Chain A, Crystal Structure Of Flt3 Length = 344

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 3/86 (3%)
Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLAT 738
           ++  +E+L F      +H DL   NVL+    V  I DFG+A+ +  +     +      
Sbjct: 181 VAKGMEFLEFK---SCVHRDLAARNVLVTHGKVVKICDFGLARDIMSDSNYVVRGNARLP 237
Query: 739 IGYMAPEYGTKGRVSTRGDVCSFGII 764
           + +MAPE   +G  + + DV S+GI+
Sbjct: 238 VKWMAPESLFEGIYTIKSDVWSYGIL 263

>pdb|2IW6|A Chain A, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed With A Bisanilinopyrimidine Inhibitor Length = 302

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/175 (28%), Positives = 77/175 (44%), Gaps = 11/175 (6%)
Query: 599 KSRTGPSNDGINSPQAIRRFSYHELLRATDRFSENNLIGIGNGMEVAVKVFHQQYERALK 658
           K R     +G+ S  AIR  S  + L   +     ++I   N + +  +  HQ     LK
Sbjct: 38  KIRLDTETEGVPS-TAIREISLLKELNHPNIVKLLDVIHTENKLYLVFEFLHQD----LK 92
Query: 659 SFEDECEVRKRIRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFG 718
           +F D   +   I    +   +   L+ L F HS  ++H DLKP N+L++ +    ++DFG
Sbjct: 93  TFMDASALTG-IPLPLIKSYLFQLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFG 151
Query: 719 IAKLLSGEDQLSKQTQTLATIGYMAPE--YGTKGRVSTRGDVCSFGIISGGKETR 771
           +A+       +      + T+ Y APE   G K   ST  D+ S G I     TR
Sbjct: 152 LARAFGVP--VRTYXHEVVTLWYRAPEILLGCK-YYSTAVDIWSLGCIFAEMVTR 203

>pdb|1Q24|A Chain A, Pka Double Mutant Model Of Pkb In Complex With Mgatp Length = 350

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 38/65 (58%), Gaps = 10/65 (15%)
Query: 682 SLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTL-ATIG 740
           + EYLH   S+ +I+ DLKP N+++D+     ++DFG AK + G      +T  L  T  
Sbjct: 153 TFEYLH---SLDLIYRDLKPENLMIDQQGYIQVTDFGFAKRVKG------RTWXLCGTPE 203
Query: 741 YMAPE 745
           Y+APE
Sbjct: 204 YLAPE 208

>pdb|3DB6|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like Kinase 1 (Plk1) Catalytic Domain In Complex With Compound 902 Length = 301

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/128 (25%), Positives = 60/128 (46%), Gaps = 7/128 (5%)
Query: 667 RKRIRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGE 726
           RK +        +  +++ + + H+  +IH DLK  N+ L++DM   I DFG+A  +  +
Sbjct: 120 RKAVTEPEARYFMRQTIQGVQYLHNNRVIHRDLKLGNLFLNDDMDVKIGDFGLATKIEFD 179
Query: 727 DQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII-----SGGKETRSMTVGETCTP 781
            +  ++     T  Y+APE   K   S   D+ S G I      G     +  + ET   
Sbjct: 180 GE--RKKDLCGTPNYIAPEVLCKKGHSFEVDIWSLGCILYTLLVGKPPFETSCLKETYIR 237
Query: 782 VRESKYEV 789
           +++++Y V
Sbjct: 238 IKKNEYSV 245

>pdb|3CJF|A Chain A, Crystal Structure Of Vegfr2 In Complex With A 3,4,5-Trimethoxy Aniline Containing Pyrimidine Length = 309

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 3/86 (3%)
Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLAT 738
           ++  +E+L    S   IH DL   N+LL E  V  I DFG+A+ +  +    ++      
Sbjct: 153 VAKGMEFLA---SRKXIHRDLAARNILLSEKNVVKIXDFGLARDIYKDPDYVRKGDARLP 209
Query: 739 IGYMAPEYGTKGRVSTRGDVCSFGII 764
           + +MAPE       + + DV SFG++
Sbjct: 210 LKWMAPETIFDRVYTIQSDVWSFGVL 235

>pdb|3VUL|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M1 In Map Kinase Jnk1 Length = 370

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/151 (31%), Positives = 68/151 (45%), Gaps = 34/151 (22%)
Query: 633 NNLIGIGNGMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVKIISSSLE-----YLH 687
            N+IG+ N       VF  Q  ++L+ F+D   +   +   NL ++I   L+     YL 
Sbjct: 83  KNIIGLLN-------VFTPQ--KSLEEFQD-VYIVMELMDANLSQVIQMELDHERMSYLL 132
Query: 688 FG--------HSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATI 739
           +         HS  IIH DLKPSN+++  D    I DFG+A+       +   T  + T 
Sbjct: 133 YQMLVGIKHLHSAGIIHRDLKPSNIVVKSDATLKILDFGLARTAGTSFMM---TPYVVTR 189
Query: 740 GYMAPE----YGTKGRVSTRGDVCSFGIISG 766
            Y APE     G K  V    D+ S G+I G
Sbjct: 190 YYRAPEVILGMGYKENV----DIWSVGVIMG 216

>pdb|3O7L|B Chain B, Crystal Structure Of Phospholamban (1-19):pka C-Subunit:amp-Pnp:mg2+ Complex Length = 350

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 38/65 (58%), Gaps = 10/65 (15%)
Query: 682 SLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTL-ATIG 740
           + EYLH   S+ +I+ DLKP N+++D+     ++DFG AK + G      +T  L  T  
Sbjct: 153 TFEYLH---SLDLIYRDLKPENLIIDQQGYIQVTDFGFAKRVKG------RTWXLCGTPE 203
Query: 741 YMAPE 745
           Y+APE
Sbjct: 204 YLAPE 208

>pdb|1XH9|A Chain A, Crystal Structures Of Protein Kinase B Selective Inhibitors In Complex With Protein Kinase A And Mutants Length = 350

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 39/65 (60%), Gaps = 10/65 (15%)
Query: 682 SLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTL-ATIG 740
           + EYLH   S+ +I+ DLKP N+++D+     ++DFG+AK + G      +T  L  T  
Sbjct: 153 TFEYLH---SLDLIYRDLKPENLMIDQQGYIKVTDFGLAKRVKG------RTWXLCGTPE 203
Query: 741 YMAPE 745
           Y+APE
Sbjct: 204 YLAPE 208

>pdb|1OB3|A Chain A, Structure Of P. Falciparum Pfpk5 Length = 288

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 44/79 (55%), Gaps = 5/79 (6%)
Query: 688 FGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPE-- 745
           + H   ++H DLKP N+L++ +    I+DFG+A+       + K T  + T+ Y AP+  
Sbjct: 115 YCHDRRVLHRDLKPQNLLINREGELKIADFGLARAFG--IPVRKYTHEIVTLWYRAPDVL 172
Query: 746 YGTKGRVSTRGDVCSFGII 764
            G+K + ST  D+ S G I
Sbjct: 173 MGSK-KYSTTIDIWSVGCI 190

>pdb|4AGU|A Chain A, Crystal Structure Of The Human Cdkl1 Kinase Domain Length = 311

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
Query: 674 NLVKIIS-SSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQ 732
           +LVK I+  +L+ ++F H    IH D+KP N+L+ +  V  + DFG A+LL+G       
Sbjct: 102 HLVKSITWQTLQAVNFCHKHNCIHRDVKPENILITKHSVIKLCDFGFARLLTGPSDYY-- 159
Query: 733 TQTLATIGYMAPE 745
              +AT  Y +PE
Sbjct: 160 DDEVATRWYRSPE 172

>pdb|3D5V|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like Kinase 1 (Plk1) Catalytic Domain. Length = 317

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/128 (25%), Positives = 60/128 (46%), Gaps = 7/128 (5%)
Query: 667 RKRIRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGE 726
           RK +        +  +++ + + H+  +IH DLK  N+ L++DM   I DFG+A  +  +
Sbjct: 136 RKAVTEPEARYFMRQTIQGVQYLHNNRVIHRDLKLGNLFLNDDMDVKIGDFGLATKIEFD 195
Query: 727 DQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII-----SGGKETRSMTVGETCTP 781
            +  ++     T  Y+APE   K   S   D+ S G I      G     +  + ET   
Sbjct: 196 GE--RKKDLCGTPNYIAPEVLCKKGHSFEVDIWSLGCILYTLLVGKPPFETSCLKETYIR 253
Query: 782 VRESKYEV 789
           +++++Y V
Sbjct: 254 IKKNEYSV 261

>pdb|4EOM|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human Cyclin A3 Complex With Atp Length = 301

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 5/91 (5%)
Query: 683 LEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYM 742
           L+ L F HS  ++H DLKP N+L++ +    ++DFG+A+       +      + T+ Y 
Sbjct: 116 LQGLAFCHSHRVLHRDLKPENLLINTEGAIKLADFGLARAFGV--PVRTYXHEVVTLWYR 173
Query: 743 APE--YGTKGRVSTRGDVCSFGIISGGKETR 771
           APE   G K   ST  D+ S G I     TR
Sbjct: 174 APEILLGCK-YYSTAVDIWSLGCIFAEMVTR 203

>pdb|2GHL|A Chain A, Mutant Mus Musculus P38 Kinase Domain In Complex With Inhibitor Pg-874743 Length = 348

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 40/68 (58%), Gaps = 5/68 (7%)
Query: 678 IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLA 737
           +I   L  L + HS  IIH DLKPSN+ ++ED    I DFG+A+    +D+++     +A
Sbjct: 126 LIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLAR--HTDDEMAG---FVA 180
Query: 738 TIGYMAPE 745
           T  Y APE
Sbjct: 181 TRWYRAPE 188

>pdb|1U5Q|A Chain A, Crystal Structure Of The Tao2 Kinase Domain: Activation And Specifity Of A Ste20p Map3k Length = 348

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 56/114 (49%), Gaps = 10/114 (8%)
Query: 654 ERALKSFEDECEVRKR-IRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVA 712
           E  L S  D  EV K+ ++   +  +   +L+ L + HS  +IH D+K  N+LL E  + 
Sbjct: 134 EYCLGSASDLLEVHKKPLQEVEIAAVTHGALQGLAYLHSHNMIHRDVKAGNILLSEPGLV 193
Query: 713 HISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEY---GTKGRVSTRGDVCSFGI 763
            + DFG A +++  +        + T  +MAPE      +G+   + DV S GI
Sbjct: 194 KLGDFGSASIMAPANXF------VGTPYWMAPEVILAMDEGQYDGKVDVWSLGI 241

>pdb|1I44|A Chain A, Crystallographic Studies Of An Activation Loop Mutant Of The Insulin Receptor Tyrosine Kinase Length = 306

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLAT 738
           I+  + YL+   +   +H DL   N ++  D    I DFG+ + +       K  + L  
Sbjct: 139 IADGMAYLN---AKKFVHRDLAARNCMVAHDFTVKIGDFGMTRDIYETAYYRKGGKGLLP 195
Query: 739 IGYMAPEYGTKGRVSTRGDVCSFGII 764
           + +MAPE    G  +T  D+ SFG++
Sbjct: 196 VRWMAPESLKDGVFTTSSDMWSFGVV 221

>pdb|2JGZ|A Chain A, Crystal Structure Of Phospho-Cdk2 In Complex With Cyclin B Length = 289

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 5/91 (5%)
Query: 683 LEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYM 742
           L+ L F HS  ++H DLKP N+L++ +    ++DFG+A+       +      + T+ Y 
Sbjct: 113 LQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVP--VRTYXHEVVTLWYR 170
Query: 743 APE--YGTKGRVSTRGDVCSFGIISGGKETR 771
           APE   G K   ST  D+ S G I     TR
Sbjct: 171 APEILLGCK-YYSTAVDIWSLGCIFAEMVTR 200

>pdb|4EON|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human Cyclin A3 Complex With The Inhibitor Ro3306 Length = 300

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 5/91 (5%)
Query: 683 LEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYM 742
           L+ L F HS  ++H DLKP N+L++ +    ++DFG+A+       +      + T+ Y 
Sbjct: 114 LQGLAFCHSHRVLHRDLKPENLLINTEGAIKLADFGLARAFGV--PVRTYXHEVVTLWYR 171
Query: 743 APE--YGTKGRVSTRGDVCSFGIISGGKETR 771
           APE   G K   ST  D+ S G I     TR
Sbjct: 172 APEILLGCK-YYSTAVDIWSLGCIFAEMVTR 201

>pdb|4EOJ|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human Cyclin A3 Complex With Atp Length = 302

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 5/91 (5%)
Query: 683 LEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYM 742
           L+ L F HS  ++H DLKP N+L++ +    ++DFG+A+       +      + T+ Y 
Sbjct: 116 LQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVP--VRTYXHEVVTLWYR 173
Query: 743 APE--YGTKGRVSTRGDVCSFGIISGGKETR 771
           APE   G K   ST  D+ S G I     TR
Sbjct: 174 APEILLGCK-YYSTAVDIWSLGCIFAEMVTR 203

>pdb|1QMZ|A Chain A, Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Complex Length = 299

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 5/91 (5%)
Query: 683 LEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYM 742
           L+ L F HS  ++H DLKP N+L++ +    ++DFG+A+       +      + T+ Y 
Sbjct: 113 LQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVP--VRTYXHEVVTLWYR 170
Query: 743 APE--YGTKGRVSTRGDVCSFGIISGGKETR 771
           APE   G K   ST  D+ S G I     TR
Sbjct: 171 APEILLGCK-YYSTAVDIWSLGCIFAEMVTR 200

>pdb|1YWR|A Chain A, Crystal Structure Analysis Of Inactive P38 Kinase Domain In Complex With A Monocyclic Pyrazolone Inhibitor Length = 360

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 40/68 (58%), Gaps = 5/68 (7%)
Query: 678 IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLA 737
           +I   L  L + HS  IIH DLKPSN+ ++ED    I DFG+A+    +D+++     +A
Sbjct: 130 LIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLAR--HTDDEMAG---FVA 184
Query: 738 TIGYMAPE 745
           T  Y APE
Sbjct: 185 TRWYRAPE 192

>pdb|1YW2|A Chain A, Mutated Mus Musculus P38 Kinase (Mp38) Length = 360

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 40/68 (58%), Gaps = 5/68 (7%)
Query: 678 IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLA 737
           +I   L  L + HS  IIH DLKPSN+ ++ED    I DFG+A+    +D+++     +A
Sbjct: 130 LIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLAR--HTDDEMAG---FVA 184
Query: 738 TIGYMAPE 745
           T  Y APE
Sbjct: 185 TRWYRAPE 192

>pdb|4EWQ|A Chain A, Human P38 Alpha Mapk In Complex With A Pyridazine Based Inhibitor Length = 383

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
Query: 678 IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLA 737
           +I   L  L + HS  IIH DLKPSN+ ++ED    I DFG+A+    E         +A
Sbjct: 153 LIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDE-----MXGYVA 207
Query: 738 TIGYMAPE 745
           T  Y APE
Sbjct: 208 TRWYRAPE 215

>pdb|3CJG|A Chain A, Crystal Structure Of Vegfr2 In Complex With A 3,4,5-Trimethoxy Aniline Containing Pyrimidine Length = 309

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 3/86 (3%)
Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLAT 738
           ++  +E+L    S   IH DL   N+LL E  V  I DFG+A+ +  +    ++      
Sbjct: 153 VAKGMEFLA---SRKXIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLP 209
Query: 739 IGYMAPEYGTKGRVSTRGDVCSFGII 764
           + +MAPE       + + DV SFG++
Sbjct: 210 LKWMAPETIFDRVYTIQSDVWSFGVL 235

>pdb|2P2I|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex With A Nicotinamide Inhibitor Length = 314

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 3/86 (3%)
Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLAT 738
           ++  +E+L    S   IH DL   N+LL E  V  I DFG+A+ +  +    ++      
Sbjct: 148 VAKGMEFLA---SRKCIHRDLAARNILLSEKNVVKICDFGLARDIXKDPDXVRKGDARLP 204
Query: 739 IGYMAPEYGTKGRVSTRGDVCSFGII 764
           + +MAPE       + + DV SFG++
Sbjct: 205 LKWMAPETIFDRVYTIQSDVWSFGVL 230

>pdb|4EOK|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human Cyclin A3 Complex With The Inhibitor Nu6102 Length = 300

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 5/91 (5%)
Query: 683 LEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYM 742
           L+ L F HS  ++H DLKP N+L++ +    ++DFG+A+       +      + T+ Y 
Sbjct: 115 LQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVP--VRTYXHEVVTLWYR 172
Query: 743 APE--YGTKGRVSTRGDVCSFGIISGGKETR 771
           APE   G K   ST  D+ S G I     TR
Sbjct: 173 APEILLGCK-YYSTAVDIWSLGCIFAEMVTR 202

>pdb|4I3Z|A Chain A, Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNESIUM IONS Length = 296

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 5/91 (5%)
Query: 683 LEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYM 742
           L+ L F HS  ++H DLKP N+L++ +    ++DFG+A+       +      + T+ Y 
Sbjct: 112 LQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVP--VRTYXHEVVTLWYR 169
Query: 743 APE--YGTKGRVSTRGDVCSFGIISGGKETR 771
           APE   G K   ST  D+ S G I     TR
Sbjct: 170 APEILLGCK-YYSTAVDIWSLGCIFAEMVTR 199

>pdb|1JST|A Chain A, Phosphorylated Cyclin-Dependent Kinase-2 Bound To Cyclin A Length = 298

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 5/91 (5%)
Query: 683 LEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYM 742
           L+ L F HS  ++H DLKP N+L++ +    ++DFG+A+       +      + T+ Y 
Sbjct: 112 LQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVP--VRTYXHEVVTLWYR 169
Query: 743 APE--YGTKGRVSTRGDVCSFGIISGGKETR 771
           APE   G K   ST  D+ S G I     TR
Sbjct: 170 APEILLGCK-YYSTAVDIWSLGCIFAEMVTR 199

>pdb|3PY3|A Chain A, Crystal Structure Of Phosphorylated P38alpha Map Kinase Length = 380

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
Query: 678 IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLA 737
           +I   L  L + HS  IIH DLKPSN+ ++ED    I DFG+A+    E         +A
Sbjct: 150 LIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDE-----MXGXVA 204
Query: 738 TIGYMAPE 745
           T  Y APE
Sbjct: 205 TRWYRAPE 212

>pdb|3I6W|A Chain A, Structure And Activation Mechanism Of The Chk2 Dna-Damage Checkpoint Kinase Length = 443

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/104 (36%), Positives = 51/104 (49%), Gaps = 11/104 (10%)
Query: 668 KRIRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLL---DEDMVAHISDFGIAKLLS 724
           KR++           L  + + H   IIH DLKP NVLL   +ED +  I+DFG +K+L 
Sbjct: 248 KRLKEATCKLYFYQMLLAVQYLHENGIIHRDLKPENVLLSSQEEDCLIKITDFGHSKIL- 306
Query: 725 GEDQLSKQTQTLATIGYMAPE----YGTKGRVSTRGDVCSFGII 764
           GE  L +      T  Y+APE     GT G  +   D  S G+I
Sbjct: 307 GETSLMR--TLCGTPTYLAPEVLVSVGTAG-YNRAVDCWSLGVI 347

>pdb|2P2H|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex With A Pyridinyl-Triazine Inhibitor Length = 314

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 3/86 (3%)
Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLAT 738
           ++  +E+L    S   IH DL   N+LL E  V  I DFG+A+ +  +    ++      
Sbjct: 148 VAKGMEFLA---SRKCIHRDLAARNILLSEKNVVKICDFGLARDIXKDPDXVRKGDARLP 204
Query: 739 IGYMAPEYGTKGRVSTRGDVCSFGII 764
           + +MAPE       + + DV SFG++
Sbjct: 205 LKWMAPETIFDRVYTIQSDVWSFGVL 230

>pdb|1W98|A Chain A, The Structural Basis Of Cdk2 Activation By Cyclin E Length = 298

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 5/91 (5%)
Query: 683 LEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYM 742
           L+ L F HS  ++H DLKP N+L++ +    ++DFG+A+       +      + T+ Y 
Sbjct: 113 LQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVP--VRTYXHEVVTLWYR 170
Query: 743 APE--YGTKGRVSTRGDVCSFGIISGGKETR 771
           APE   G K   ST  D+ S G I     TR
Sbjct: 171 APEILLGCK-YYSTAVDIWSLGCIFAEMVTR 200

>pdb|1E9H|A Chain A, Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex With The Inhibitor Indirubin-5-Sulphonate Bound Length = 297

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 5/91 (5%)
Query: 683 LEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYM 742
           L+ L F HS  ++H DLKP N+L++ +    ++DFG+A+       +      + T+ Y 
Sbjct: 113 LQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVP--VRTYXHEVVTLWYR 170
Query: 743 APE--YGTKGRVSTRGDVCSFGIISGGKETR 771
           APE   G K   ST  D+ S G I     TR
Sbjct: 171 APEILLGCK-YYSTAVDIWSLGCIFAEMVTR 200

>pdb|1H1P|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED With The Inhibitor Nu2058 Length = 303

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 49/175 (28%), Positives = 76/175 (43%), Gaps = 11/175 (6%)
Query: 599 KSRTGPSNDGINSPQAIRRFSYHELLRATDRFSENNLIGIGNGMEVAVKVFHQQYERALK 658
           K R     +G+ S  AIR  S  + L   +     ++I   N + +  +  HQ     LK
Sbjct: 39  KIRLDTETEGVPS-TAIREISLLKELNHPNIVKLLDVIHTENKLYLVFEFLHQD----LK 93
Query: 659 SFEDECEVRKRIRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFG 718
            F D   +   I    +   +   L+ L F HS  ++H DLKP N+L++ +    ++DFG
Sbjct: 94  KFMDASALTG-IPLPLIKSYLFQLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFG 152
Query: 719 IAKLLSGEDQLSKQTQTLATIGYMAPE--YGTKGRVSTRGDVCSFGIISGGKETR 771
           +A+       +      + T+ Y APE   G K   ST  D+ S G I     TR
Sbjct: 153 LARAFGVP--VRTYXHEVVTLWYRAPEILLGCK-YYSTAVDIWSLGCIFAEMVTR 204

>pdb|1V0O|A Chain A, Structure Of P. Falciparum Pfpk5-Indirubin-5-Sulphonate Ligand Complex Length = 288

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 44/79 (55%), Gaps = 5/79 (6%)
Query: 688 FGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPE-- 745
           + H   ++H DLKP N+L++ +    I+DFG+A+       + K T  + T+ Y AP+  
Sbjct: 115 YCHDRRVLHRDLKPQNLLINREGELKIADFGLARAFG--IPVRKYTHEVVTLWYRAPDVL 172
Query: 746 YGTKGRVSTRGDVCSFGII 764
            G+K + ST  D+ S G I
Sbjct: 173 MGSK-KYSTTIDIWSVGCI 190

>pdb|4EOS|A Chain A, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex With The Inhibitor Ro3306 Length = 300

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 5/91 (5%)
Query: 683 LEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYM 742
           L+ L F HS  ++H DLKP N+L++ +    ++DFG+A+       +      + T+ Y 
Sbjct: 115 LQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVP--VRTYXHEVVTLWYR 172
Query: 743 APE--YGTKGRVSTRGDVCSFGIISGGKETR 771
           APE   G K   ST  D+ S G I     TR
Sbjct: 173 APEILLGCK-YYSTAVDIWSLGCIFAEMVTR 202

>pdb|4EOQ|A Chain A, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex With Atp Length = 301

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 5/91 (5%)
Query: 683 LEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYM 742
           L+ L F HS  ++H DLKP N+L++ +    ++DFG+A+       +      + T+ Y 
Sbjct: 116 LQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVP--VRTYXHEVVTLWYR 173
Query: 743 APE--YGTKGRVSTRGDVCSFGIISGGKETR 771
           APE   G K   ST  D+ S G I     TR
Sbjct: 174 APEILLGCK-YYSTAVDIWSLGCIFAEMVTR 203

>pdb|4BCQ|A Chain A, Structure Of Cdk2 In Complex With Cyclin A And A 2-amino-4- Heteroaryl-pyrimidine Inhibitor Length = 301

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 5/91 (5%)
Query: 683 LEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYM 742
           L+ L F HS  ++H DLKP N+L++ +    ++DFG+A+       +      + T+ Y 
Sbjct: 115 LQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVP--VRTYXHEVVTLWYR 172
Query: 743 APE--YGTKGRVSTRGDVCSFGIISGGKETR 771
           APE   G K   ST  D+ S G I     TR
Sbjct: 173 APEILLGCK-YYSTAVDIWSLGCIFAEMVTR 202

>pdb|3U6J|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex With A Pyrazolone Inhibitor Length = 314

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 3/86 (3%)
Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLAT 738
           ++  +E+L    S   IH DL   N+LL E  V  I DFG+A+ +  +    ++      
Sbjct: 148 VAKGMEFLA---SRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLP 204
Query: 739 IGYMAPEYGTKGRVSTRGDVCSFGII 764
           + +MAPE       + + DV SFG++
Sbjct: 205 LKWMAPETIFDRVYTIQSDVWSFGVL 230

>pdb|3L9M|A Chain A, Crystal Structure Of Pkab3 (Pka Triple Mutant V123a, L173m, Q181k) With Compound 18 Length = 351

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 38/65 (58%), Gaps = 10/65 (15%)
Query: 682 SLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTL-ATIG 740
           + EYLH   S+ +I+ DLKP N+++D+     ++DFG AK + G      +T  L  T  
Sbjct: 154 TFEYLH---SLDLIYRDLKPENLMIDQQGYIKVTDFGFAKRVKG------RTWXLCGTPE 204
Query: 741 YMAPE 745
           Y+APE
Sbjct: 205 YLAPE 209

>pdb|3EWH|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex With A Pyridyl-Pyrimidine Benzimidazole Inhibitor Length = 314

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 3/86 (3%)
Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLAT 738
           ++  +E+L    S   IH DL   N+LL E  V  I DFG+A+ +  +    ++      
Sbjct: 148 VAKGMEFLA---SRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLP 204
Query: 739 IGYMAPEYGTKGRVSTRGDVCSFGII 764
           + +MAPE       + + DV SFG++
Sbjct: 205 LKWMAPETIFDRVYTIQSDVWSFGVL 230

>pdb|2VO0|A Chain A, Structure Of Pka-Pkb Chimera Complexed With C-(4-(4- Chlorophenyl)-1-(7h-Pyrrolo(2, 3-D)pyrimidin-4-Yl)piperidin- 4-Yl)methylamine Length = 351

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 38/65 (58%), Gaps = 10/65 (15%)
Query: 682 SLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTL-ATIG 740
           + EYLH   S+ +I+ DLKP N+++D+     ++DFG AK + G      +T  L  T  
Sbjct: 154 TFEYLH---SLDLIYRDLKPENLMIDQQGYIKVTDFGFAKRVKG------RTWXLCGTPE 204
Query: 741 YMAPE 745
           Y+APE
Sbjct: 205 YLAPE 209

>pdb|2UVY|A Chain A, Structure Of Pka-pkb Chimera Complexed With Methyl-(4-(9h- Purin-6-yl)-benzyl)-amine Length = 351

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 38/65 (58%), Gaps = 10/65 (15%)
Query: 682 SLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTL-ATIG 740
           + EYLH   S+ +I+ DLKP N+++D+     ++DFG AK + G      +T  L  T  
Sbjct: 154 TFEYLH---SLDLIYRDLKPENLMIDQQGYIKVTDFGFAKRVKG------RTWXLCGTPE 204
Query: 741 YMAPE 745
           Y+APE
Sbjct: 205 YLAPE 209

>pdb|2JDT|A Chain A, Structure Of Pka-Pkb Chimera Complexed With Isoquinoline-5- Sulfonic Acid (2-(2-(4-Chlorobenzyloxy) Ethylamino)ethyl) Amide Length = 351

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 38/65 (58%), Gaps = 10/65 (15%)
Query: 682 SLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTL-ATIG 740
           + EYLH   S+ +I+ DLKP N+++D+     ++DFG AK + G      +T  L  T  
Sbjct: 154 TFEYLH---SLDLIYRDLKPENLMIDQQGYIKVTDFGFAKRVKG------RTWXLCGTPE 204
Query: 741 YMAPE 745
           Y+APE
Sbjct: 205 YLAPE 209

>pdb|4AGC|A Chain A, Crystal Structure Of Vegfr2 (Juxtamembrane And Kinase Domains) In Complex With Axitinib (Ag-013736) (N-Methyl-2-( 3-((E)-2-Pyridin-2-Yl-Vinyl)-1h-Indazol-6-Ylsulfanyl)- Benzamide) Length = 353

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 3/86 (3%)
Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLAT 738
           ++  +E+L    S   IH DL   N+LL E  V  I DFG+A+ +  +    ++      
Sbjct: 194 VAKGMEFLA---SRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLP 250
Query: 739 IGYMAPEYGTKGRVSTRGDVCSFGII 764
           + +MAPE       + + DV SFG++
Sbjct: 251 LKWMAPETIFDRVYTIQSDVWSFGVL 276

>pdb|3BHT|A Chain A, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX WITH THE Inhibitor Meriolin 3 Length = 300

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 5/91 (5%)
Query: 683 LEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYM 742
           L+ L F HS  ++H DLKP N+L++ +    ++DFG+A+       +      + T+ Y 
Sbjct: 114 LQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVP--VRTYXHEVVTLWYR 171
Query: 743 APE--YGTKGRVSTRGDVCSFGIISGGKETR 771
           APE   G K   ST  D+ S G I     TR
Sbjct: 172 APEILLGCK-YYSTAVDIWSLGCIFAEMVTR 201

>pdb|1V0B|A Chain A, Crystal Structure Of The T198a Mutant Of Pfpk5 Length = 288

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 44/79 (55%), Gaps = 5/79 (6%)
Query: 688 FGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPE-- 745
           + H   ++H DLKP N+L++ +    I+DFG+A+       + K T  + T+ Y AP+  
Sbjct: 115 YCHDRRVLHRDLKPQNLLINREGELKIADFGLARAFG--IPVRKYTHEVVTLWYRAPDVL 172
Query: 746 YGTKGRVSTRGDVCSFGII 764
            G+K + ST  D+ S G I
Sbjct: 173 MGSK-KYSTTIDIWSVGCI 190

>pdb|3GCP|A Chain A, Human P38 Map Kinase In Complex With Sb203580 Length = 360

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
Query: 678 IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLA 737
           +I   L  L + HS  IIH DLKPSN+ ++ED    I DFG+ +    E      T  +A
Sbjct: 130 LIYQILRGLKYIHSADIIHRDLKPSNLAVNEDSELKILDFGLCRHTDDE-----MTGYVA 184
Query: 738 TIGYMAPE 745
           T  Y APE
Sbjct: 185 TRWYRAPE 192

>pdb|3D5W|A Chain A, Crystal Structure Of A Phosphorylated Polo-Like Kinase 1 (Plk1) Catalytic Domain In Complex With Adp Length = 317

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/128 (25%), Positives = 60/128 (46%), Gaps = 7/128 (5%)
Query: 667 RKRIRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGE 726
           RK +        +  +++ + + H+  +IH DLK  N+ L++DM   I DFG+A  +  +
Sbjct: 136 RKAVTEPEARYFMRQTIQGVQYLHNNRVIHRDLKLGNLFLNDDMDVKIGDFGLATKIEFD 195
Query: 727 DQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII-----SGGKETRSMTVGETCTP 781
            +  ++     T  Y+APE   K   S   D+ S G I      G     +  + ET   
Sbjct: 196 GE--RKKXLCGTPNYIAPEVLCKKGHSFEVDIWSLGCILYTLLVGKPPFETSCLKETYIR 253
Query: 782 VRESKYEV 789
           +++++Y V
Sbjct: 254 IKKNEYSV 261

>pdb|4EOI|A Chain A, Thr 160 Phosphorylated Cdk2 K89d, Q131e - Human Cyclin A3 Complex With The Inhibitor Ro3306 Length = 299

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 5/91 (5%)
Query: 683 LEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYM 742
           L+ L F HS  ++H DLKP N+L++ +    ++DFG+A+       +      + T+ Y 
Sbjct: 113 LQGLAFCHSHRVLHRDLKPENLLINTEGAIKLADFGLARAFGV--PVRTYXHEVVTLWYR 170
Query: 743 APE--YGTKGRVSTRGDVCSFGIISGGKETR 771
           APE   G K   ST  D+ S G I     TR
Sbjct: 171 APEILLGCK-YYSTAVDIWSLGCIFAEMVTR 200

>pdb|1SZM|A Chain A, Dual Binding Mode Of Bisindolylmaleimide 2 To Protein Kinase A (Pka) Length = 350

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 38/65 (58%), Gaps = 10/65 (15%)
Query: 682 SLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTL-ATIG 740
           + EYLH   S+ +I+ DLKP N+++D+     ++DFG AK + G      +T  L  T  
Sbjct: 153 TFEYLH---SLDLIYRDLKPENLMIDQQGYIKVTDFGFAKRVKG------RTWXLCGTPE 203
Query: 741 YMAPE 745
           Y+APE
Sbjct: 204 YLAPE 208

>pdb|1Q61|A Chain A, Pka Triple Mutant Model Of Pkb Length = 350

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 38/65 (58%), Gaps = 10/65 (15%)
Query: 682 SLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTL-ATIG 740
           + EYLH   S+ +I+ DLKP N+++D+     ++DFG AK + G      +T  L  T  
Sbjct: 153 TFEYLH---SLDLIYRDLKPENLMIDQQGYIKVTDFGFAKRVKG------RTWXLCGTPE 203
Query: 741 YMAPE 745
           Y+APE
Sbjct: 204 YLAPE 208

>pdb|2XIR|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex With Pf-00337210 (N,2-Dimethyl-6-(7-(2-Morpholinoethoxy) Quinolin-4-Yloxy)benzofuran-3-Carboxamide) Length = 316

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 3/86 (3%)
Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLAT 738
           ++  +E+L    S   IH DL   N+LL E  V  I DFG+A+ +  +    ++      
Sbjct: 157 VAKGMEFLA---SRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLP 213
Query: 739 IGYMAPEYGTKGRVSTRGDVCSFGII 764
           + +MAPE       + + DV SFG++
Sbjct: 214 LKWMAPETIFDRVYTIQSDVWSFGVL 239

>pdb|4EOP|A Chain A, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3 Complex With The Inhibitor Ro3306 Length = 300

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 5/91 (5%)
Query: 683 LEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYM 742
           L+ L F HS  ++H DLKP N+L++ +    ++DFG+A+       +      + T+ Y 
Sbjct: 115 LQGLAFCHSHRVLHRDLKPENLLINTEGAIKLADFGLARAFGV--PVRTYXHEVVTLWYR 172
Query: 743 APE--YGTKGRVSTRGDVCSFGIISGGKETR 771
           APE   G K   ST  D+ S G I     TR
Sbjct: 173 APEILLGCK-YYSTAVDIWSLGCIFAEMVTR 202

>pdb|1OGU|A Chain A, Structure Of Human Thr160-phospho Cdk2/cyclin A Complexed With A 2-arylamino-4-cyclohexylmethyl-5-nitroso-6- aminopyrimidine Inhibitor Length = 302

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 5/91 (5%)
Query: 683 LEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYM 742
           L+ L F HS  ++H DLKP N+L++ +    ++DFG+A+       +      + T+ Y 
Sbjct: 116 LQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVP--VRTYXHEVVTLWYR 173
Query: 743 APE--YGTKGRVSTRGDVCSFGIISGGKETR 771
           APE   G K   ST  D+ S G I     TR
Sbjct: 174 APEILLGCK-YYSTAVDIWSLGCIFAEMVTR 203

>pdb|4EOO|A Chain A, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3 Complex With Atp Length = 299

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 5/91 (5%)
Query: 683 LEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYM 742
           L+ L F HS  ++H DLKP N+L++ +    ++DFG+A+       +      + T+ Y 
Sbjct: 114 LQGLAFCHSHRVLHRDLKPENLLINTEGAIKLADFGLARAFGV--PVRTYXHEVVTLWYR 171
Query: 743 APE--YGTKGRVSTRGDVCSFGIISGGKETR 771
           APE   G K   ST  D+ S G I     TR
Sbjct: 172 APEILLGCK-YYSTAVDIWSLGCIFAEMVTR 201

>pdb|3KA0|A Chain A, Mk2 Complex With Inhibitor 6-(5-(2-Aminopyrimidin-4-Ylamino)-2- Hydroxyphenyl)-N-Methylbenzo[b]thiophene-2-Carboxamide Length = 320

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 47/95 (49%), Gaps = 6/95 (6%)
Query: 673 RNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDE---DMVAHISDFGIAKLLSGEDQL 729
           R   +I+ S  E + + HSI I H D+KP N+L      + +  ++DFG AK  +  + L
Sbjct: 115 REASEIMKSIGEAIQYLHSINIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTSHNSL 174
Query: 730 SKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
              T+   T  Y+APE     +     D+ S G+I
Sbjct: 175 ---TEPCYTPYYVAPEVLGPEKYDKSCDMWSLGVI 206

>pdb|3QHR|A Chain A, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic Length = 298

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 5/91 (5%)
Query: 683 LEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYM 742
           L+ L F HS  ++H DLKP N+L++ +    ++DFG+A+       +      + T+ Y 
Sbjct: 114 LQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVP--VRTYXHEVVTLWYR 171
Query: 743 APE--YGTKGRVSTRGDVCSFGIISGGKETR 771
           APE   G K   ST  D+ S G I     TR
Sbjct: 172 APEILLGCK-YYSTAVDIWSLGCIFAEMVTR 201

>pdb|1YWN|A Chain A, Vegfr2 In Complex With A Novel 4-amino-furo[2,3-d]pyrimidine Length = 316

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 3/86 (3%)
Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLAT 738
           ++  +E+L    S   IH DL   N+LL E  V  I DFG+A+ +  +    ++      
Sbjct: 157 VAKGMEFLA---SRKCIHRDLAARNILLSEKNVVKICDFGLARDIXKDPDXVRKGDARLP 213
Query: 739 IGYMAPEYGTKGRVSTRGDVCSFGII 764
           + +MAPE       + + DV SFG++
Sbjct: 214 LKWMAPETIFDRVYTIQSDVWSFGVL 239

>pdb|3VHE|A Chain A, Crystal Structure Of Human Vegfr2 Kinase Domain With A Novel Pyrrolopyrimidine Inhibitor Length = 359

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 3/86 (3%)
Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLAT 738
           ++  +E+L    S   IH DL   N+LL E  V  I DFG+A+ +  +    ++      
Sbjct: 202 VAKGMEFLA---SRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLP 258
Query: 739 IGYMAPEYGTKGRVSTRGDVCSFGII 764
           + +MAPE       + + DV SFG++
Sbjct: 259 LKWMAPETIFDRVYTIQSDVWSFGVL 284

>pdb|2OH4|A Chain A, Crystal Structure Of Vegfr2 With A Benzimidazole-Urea Inhibitor Length = 316

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 3/86 (3%)
Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLAT 738
           ++  +E+L    S   IH DL   N+LL E  V  I DFG+A+ +  +    ++      
Sbjct: 157 VAKGMEFLA---SRKCIHRDLAARNILLSEKNVVKICDFGLARDIXKDPDXVRKGDARLP 213
Query: 739 IGYMAPEYGTKGRVSTRGDVCSFGII 764
           + +MAPE       + + DV SFG++
Sbjct: 214 LKWMAPETIFDRVYTIQSDVWSFGVL 239

>pdb|3D5U|A Chain A, Crystal Structure Of A Wildtype Polo-Like Kinase 1 (Plk1) Catalytic Domain Length = 317

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/128 (25%), Positives = 60/128 (46%), Gaps = 7/128 (5%)
Query: 667 RKRIRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGE 726
           RK +        +  +++ + + H+  +IH DLK  N+ L++DM   I DFG+A  +  +
Sbjct: 136 RKAVTEPEARYFMRQTIQGVQYLHNNRVIHRDLKLGNLFLNDDMDVKIGDFGLATKIEFD 195
Query: 727 DQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII-----SGGKETRSMTVGETCTP 781
            +  ++     T  Y+APE   K   S   D+ S G I      G     +  + ET   
Sbjct: 196 GE--RKKTLCGTPNYIAPEVLCKKGHSFEVDIWSLGCILYTLLVGKPPFETSCLKETYIR 253
Query: 782 VRESKYEV 789
           +++++Y V
Sbjct: 254 IKKNEYSV 261

>pdb|2JAM|A Chain A, Crystal Structure Of Human Calmodulin-Dependent Protein Kinase I G Length = 304

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/206 (24%), Positives = 91/206 (44%), Gaps = 23/206 (11%)
Query: 567 RKMLLLVIVL---PLSTALIVVVTLTLKWKLIKCWKSRTGPSNDGINSPQAIRRFSYHE- 622
           RK  + + VL     S   +V   LT K   +KC K      +  + +  A+ +   HE 
Sbjct: 8   RKTFIFMEVLGSGAFSEVFLVKQRLTGKLFALKCIKKSPAFRDSSLENEIAVLKKIKHEN 67
Query: 623 LLRATDRFSENNLIGIGNGMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVKIISSS 682
           ++   D +       +   +    ++F +  ER + + +D   V         ++ + S+
Sbjct: 68  IVTLEDIYESTTHYYLVMQLVSGGELFDRILERGVYTEKDASLV---------IQQVLSA 118
Query: 683 LEYLHFGHSIPIIHCDLKPSNVLL---DEDMVAHISDFGIAKLLSGEDQLSKQTQTLATI 739
           ++YLH      I+H DLKP N+L    +E+    I+DFG++K+    +Q    +    T 
Sbjct: 119 VKYLH---ENGIVHRDLKPENLLYLTPEENSKIMITDFGLSKM----EQNGIMSTACGTP 171
Query: 740 GYMAPEYGTKGRVSTRGDVCSFGIIS 765
           GY+APE   +   S   D  S G+I+
Sbjct: 172 GYVAPEVLAQKPYSKAVDCWSIGVIT 197

>pdb|3VNT|A Chain A, Crystal Structure Of The Kinase Domain Of Human Vegfr2 With A [1, 3]thiazolo[5,4-B]pyridine Derivative Length = 318

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 3/86 (3%)
Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLAT 738
           ++  +E+L    S   IH DL   N+LL E  V  I DFG+A+ +  +    ++      
Sbjct: 159 VAKGMEFLA---SRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLP 215
Query: 739 IGYMAPEYGTKGRVSTRGDVCSFGII 764
           + +MAPE       + + DV SFG++
Sbjct: 216 LKWMAPETIFDRVYTIQSDVWSFGVL 241

>pdb|3VID|A Chain A, Crystal Structure Of Human Vegfr2 Kinase Domain With Compound A Length = 356

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 3/86 (3%)
Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLAT 738
           ++  +E+L    S   IH DL   N+LL E  V  I DFG+A+ +  +    ++      
Sbjct: 200 VAKGMEFLA---SRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLP 256
Query: 739 IGYMAPEYGTKGRVSTRGDVCSFGII 764
           + +MAPE       + + DV SFG++
Sbjct: 257 LKWMAPETIFDRVYTIQSDVWSFGVL 282

>pdb|3I6U|A Chain A, Structure And Activation Mechanism Of The Chk2 Dna-Damage Checkpoint Kinase Length = 419

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/104 (36%), Positives = 51/104 (49%), Gaps = 11/104 (10%)
Query: 668 KRIRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLL---DEDMVAHISDFGIAKLLS 724
           KR++           L  + + H   IIH DLKP NVLL   +ED +  I+DFG +K+L 
Sbjct: 234 KRLKEATCKLYFYQMLLAVQYLHENGIIHRDLKPENVLLSSQEEDCLIKITDFGHSKIL- 292
Query: 725 GEDQLSKQTQTLATIGYMAPE----YGTKGRVSTRGDVCSFGII 764
           GE  L +      T  Y+APE     GT G  +   D  S G+I
Sbjct: 293 GETSLMR--TLCGTPTYLAPEVLVSVGTAG-YNRAVDCWSLGVI 333

>pdb|3C7Q|A Chain A, Structure Of Vegfr2 Kinase Domain In Complex With Bibf1120 Length = 316

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 3/86 (3%)
Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLAT 738
           ++  +E+L    S   IH DL   N+LL E  V  I DFG+A+ +  +    ++      
Sbjct: 157 VAKGMEFLA---SRKXIHRDLAARNILLSEKNVVKICDFGLARDIXKDPDXVRKGDARLP 213
Query: 739 IGYMAPEYGTKGRVSTRGDVCSFGII 764
           + +MAPE       + + DV SFG++
Sbjct: 214 LKWMAPETIFDRVYTIQSDVWSFGVL 239

>pdb|2IW8|A Chain A, Structure Of Human Thr160-Phospho Cdk2-Cyclin A F82h-L83v- H84d Mutant With An O6-Cyclohexylmethylguanine Inhibitor Length = 302

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 5/91 (5%)
Query: 683 LEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYM 742
           L+ L F HS  ++H DLKP N+L++ +    ++DFG+A+       +      + T+ Y 
Sbjct: 116 LQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVP--VRTYXHEVVTLWYR 173
Query: 743 APE--YGTKGRVSTRGDVCSFGIISGGKETR 771
           APE   G K   ST  D+ S G I     TR
Sbjct: 174 APEILLGCK-YYSTAVDIWSLGCIFAEMVTR 203

>pdb|2XK9|A Chain A, Structural Analysis Of Checkpoint Kinase 2 (Chk2) In Complex With Inhibitor Pv1533 Length = 322

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/104 (36%), Positives = 51/104 (49%), Gaps = 11/104 (10%)
Query: 668 KRIRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLL---DEDMVAHISDFGIAKLLS 724
           KR++           L  + + H   IIH DLKP NVLL   +ED +  I+DFG +K+L 
Sbjct: 108 KRLKEATCKLYFYQMLLAVQYLHENGIIHRDLKPENVLLSSQEEDCLIKITDFGHSKIL- 166
Query: 725 GEDQLSKQTQTLATIGYMAPE----YGTKGRVSTRGDVCSFGII 764
           GE  L +      T  Y+APE     GT G  +   D  S G+I
Sbjct: 167 GETSLMR--TLCGTPTYLAPEVLVSVGTAG-YNRAVDCWSLGVI 207

>pdb|2W0J|A Chain A, Crystal Structure Of Chk2 In Complex With Nsc 109555, A Specific Inhibitor Length = 323

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/104 (36%), Positives = 51/104 (49%), Gaps = 11/104 (10%)
Query: 668 KRIRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLL---DEDMVAHISDFGIAKLLS 724
           KR++           L  + + H   IIH DLKP NVLL   +ED +  I+DFG +K+L 
Sbjct: 109 KRLKEATCKLYFYQMLLAVQYLHENGIIHRDLKPENVLLSSQEEDCLIKITDFGHSKIL- 167
Query: 725 GEDQLSKQTQTLATIGYMAPE----YGTKGRVSTRGDVCSFGII 764
           GE  L +      T  Y+APE     GT G  +   D  S G+I
Sbjct: 168 GETSLMR--TLCGTPTYLAPEVLVSVGTAG-YNRAVDCWSLGVI 208

>pdb|3H9F|A Chain A, Crystal Structure Of Human Dual Specificity Protein Kinase (Ttk) In Complex With A Pyrimido-Diazepin Ligand Length = 313

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/108 (33%), Positives = 49/108 (45%), Gaps = 19/108 (17%)
Query: 683 LEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYM 742
           LE +H  H   I+H DLKP+N L+ + M+  I DFGIA  +  +     +   + T+ YM
Sbjct: 137 LEAVHTIHQHGIVHSDLKPANFLIVDGMLKLI-DFGIANQMQPDXXXVVKDSQVGTVNYM 195
Query: 743 APEYGTKGRVSTR------------GDVCSFGIISGGKETRSMTVGET 778
            PE   K   S+R             DV S G I        MT G+T
Sbjct: 196 PPE-AIKDMSSSRENGKSKSKISPKSDVWSLGCI-----LYYMTYGKT 237

>pdb|2YCF|A Chain A, Crystal Structure Of Checkpoint Kinase 2 In Complex With Inhibitor Pv1531 Length = 322

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/104 (36%), Positives = 51/104 (49%), Gaps = 11/104 (10%)
Query: 668 KRIRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLL---DEDMVAHISDFGIAKLLS 724
           KR++           L  + + H   IIH DLKP NVLL   +ED +  I+DFG +K+L 
Sbjct: 109 KRLKEATCKLYFYQMLLAVQYLHENGIIHRDLKPENVLLSSQEEDCLIKITDFGHSKIL- 167
Query: 725 GEDQLSKQTQTLATIGYMAPE----YGTKGRVSTRGDVCSFGII 764
           GE  L +      T  Y+APE     GT G  +   D  S G+I
Sbjct: 168 GETSLMR--TLCGTPTYLAPEVLVSVGTAG-YNRAVDCWSLGVI 208

>pdb|1VR2|A Chain A, Human Vascular Endothelial Growth Factor Receptor 2 (Kdr) Kinase Domain Length = 316

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 3/86 (3%)
Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLAT 738
           ++  +E+L    S   IH DL   N+LL E  V  I DFG+A+ +  +    ++      
Sbjct: 157 VAKGMEFLA---SRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDXVRKGDARLP 213
Query: 739 IGYMAPEYGTKGRVSTRGDVCSFGII 764
           + +MAPE       + + DV SFG++
Sbjct: 214 LKWMAPETIFDRVYTIQSDVWSFGVL 239

>pdb|1Y6A|A Chain A, Crystal Structure Of Vegfr2 In Complex With A 2-Anilino-5-Aryl-Oxazole Inhibitor Length = 366

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 3/86 (3%)
Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLAT 738
           ++  +E+L    S   IH DL   N+LL E  V  I DFG+A+ +  +    ++      
Sbjct: 207 VAKGMEFLA---SRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLP 263
Query: 739 IGYMAPEYGTKGRVSTRGDVCSFGII 764
           + +MAPE       + + DV SFG++
Sbjct: 264 LKWMAPETIFDRVYTIQSDVWSFGVL 289

>pdb|2YCR|A Chain A, Crystal Structure Of Checkpoint Kinase 2 In Complex With Inhibitor Pv976 Length = 323

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/104 (36%), Positives = 51/104 (49%), Gaps = 11/104 (10%)
Query: 668 KRIRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLL---DEDMVAHISDFGIAKLLS 724
           KR++           L  + + H   IIH DLKP NVLL   +ED +  I+DFG +K+L 
Sbjct: 109 KRLKEATCKLYFYQMLLAVQYLHENGIIHRDLKPENVLLSSQEEDCLIKITDFGHSKIL- 167
Query: 725 GEDQLSKQTQTLATIGYMAPE----YGTKGRVSTRGDVCSFGII 764
           GE  L +      T  Y+APE     GT G  +   D  S G+I
Sbjct: 168 GETSLMR--TLCGTPTYLAPEVLVSVGTAG-YNRAVDCWSLGVI 208

>pdb|3PLS|A Chain A, Ron In Complex With Ligand Amp-Pnp Length = 298

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 5/88 (5%)
Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLAT 738
           ++  +EYL        +H DL   N +LDE     ++DFG+A+ +   +  S Q    A 
Sbjct: 133 VARGMEYLA---EQKFVHRDLAARNCMLDESFTVKVADFGLARDILDREYYSVQQHRHAR 189
Query: 739 --IGYMAPEYGTKGRVSTRGDVCSFGII 764
             + + A E     R +T+ DV SFG++
Sbjct: 190 LPVKWTALESLQTYRFTTKSDVWSFGVL 217

>pdb|1XJD|A Chain A, Crystal Structure Of Pkc-Theta Complexed With Staurosporine At 2a Resolution Length = 345

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/81 (37%), Positives = 43/81 (53%), Gaps = 6/81 (7%)
Query: 686 LHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQL--SKQTQTLATIGYMA 743
           L F HS  I++ DLK  N+LLD+D    I+DFG+ K    E+ L  +K      T  Y+A
Sbjct: 131 LQFLHSKGIVYRDLKLDNILLDKDGHIKIADFGMCK----ENMLGDAKTNXFCGTPDYIA 186
Query: 744 PEYGTKGRVSTRGDVCSFGII 764
           PE     + +   D  SFG++
Sbjct: 187 PEILLGQKYNHSVDWWSFGVL 207

>pdb|3VHK|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex With A Back Pocket Binder Length = 368

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 3/86 (3%)
Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLAT 738
           ++  +E+L    S   IH DL   N+LL E  V  I DFG+A+ +  +    ++      
Sbjct: 209 VAKGMEFLA---SRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLP 265
Query: 739 IGYMAPEYGTKGRVSTRGDVCSFGII 764
           + +MAPE       + + DV SFG++
Sbjct: 266 LKWMAPETIFDRVYTIQSDVWSFGVL 291

>pdb|4AW5|A Chain A, Complex Of The Ephb4 Kinase Domain With An Oxindole Inhibitor Length = 291

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/93 (26%), Positives = 48/93 (51%), Gaps = 6/93 (6%)
Query: 675 LVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQ 734
           +++ I+S + YL     +  +H DL   N+L++ ++V  +SDFG+++ L         T 
Sbjct: 121 MLRGIASGMRYLA---EMSYVHRDLAARNILVNSNLVCKVSDFGLSRFLEENSSDPTYTS 177
Query: 735 TLA---TIGYMAPEYGTKGRVSTRGDVCSFGII 764
           +L     I + APE     + ++  D  S+GI+
Sbjct: 178 SLGGKIPIRWTAPEAIAFRKFTSASDAWSYGIV 210

>pdb|2HEN|A Chain A, Crystal Structure Of The Ephb2 Receptor Kinase Domain In Complex With Adp Length = 286

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 52/95 (54%), Gaps = 10/95 (10%)
Query: 675 LVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQ 734
           +++ I++ ++YL     +  +H  L   N+L++ ++V  +SDFG+++ L  ED  S  T 
Sbjct: 114 MLRGIAAGMKYLA---DMNYVHRALAARNILVNSNLVCKVSDFGLSRFL--EDDTSDPTY 168
Query: 735 TLA-----TIGYMAPEYGTKGRVSTRGDVCSFGII 764
           T A      I + APE     + ++  DV S+GI+
Sbjct: 169 TSALGGKIPIRWTAPEAIQYRKFTSASDVWSYGIV 203

>pdb|2CN5|A Chain A, Crystal Structure Of Human Chk2 In Complex With Adp Length = 329

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/104 (36%), Positives = 51/104 (49%), Gaps = 11/104 (10%)
Query: 668 KRIRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLL---DEDMVAHISDFGIAKLLS 724
           KR++           L  + + H   IIH DLKP NVLL   +ED +  I+DFG +K+L 
Sbjct: 115 KRLKEATCKLYFYQMLLAVQYLHENGIIHRDLKPENVLLSSQEEDCLIKITDFGHSKIL- 173
Query: 725 GEDQLSKQTQTLATIGYMAPE----YGTKGRVSTRGDVCSFGII 764
           GE  L +      T  Y+APE     GT G  +   D  S G+I
Sbjct: 174 GETSLMR--TLCGTPTYLAPEVLVSVGTAG-YNRAVDCWSLGVI 214

>pdb|2B9H|A Chain A, Crystal Structure Of Fus3 With A Docking Motif From Ste7 Length = 353

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 48/96 (50%), Gaps = 9/96 (9%)
Query: 678 IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLL--SGED------QL 729
            I  +L  +   H   +IH DLKPSN+L++ +    + DFG+A+++  S  D      Q 
Sbjct: 117 FIYQTLRAVKVLHGSNVIHRDLKPSNLLINSNCDLKVCDFGLARIIDESAADNSEPTGQQ 176
Query: 730 SKQTQTLATIGYMAPEYG-TKGRVSTRGDVCSFGII 764
           S   + +AT  Y APE   T  + S   DV S G I
Sbjct: 177 SGMVEFVATRWYRAPEVMLTSAKYSRAMDVWSCGCI 212

>pdb|2GCD|A Chain A, Tao2 Kinase Domain-Staurosporine Structure Length = 309

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 56/114 (49%), Gaps = 10/114 (8%)
Query: 654 ERALKSFEDECEVRKR-IRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVA 712
           E  L S  D  EV K+ ++   +  +   +L+ L + HS  +IH D+K  N+LL E  + 
Sbjct: 95  EYCLGSASDLLEVHKKPLQEVEIAAVTHGALQGLAYLHSHNMIHRDVKAGNILLSEPGLV 154
Query: 713 HISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEY---GTKGRVSTRGDVCSFGI 763
            + DFG A +++  +        + T  +MAPE      +G+   + DV S GI
Sbjct: 155 KLGDFGSASIMAPANXF------VGTPYWMAPEVILAMDEGQYDGKVDVWSLGI 202

>pdb|2WZJ|A Chain A, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r, T208e Double Mutant Length = 327

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 49/103 (47%), Gaps = 13/103 (12%)
Query: 663 ECEVRKRIRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKL 722
           E E R + R       I S+++Y H      I+H DLK  N+LLD DM   I+DFG +  
Sbjct: 112 EKEARAKFRQ------IVSAVQYCH---QKFIVHRDLKAENLLLDADMNIKIADFGFSNE 162
Query: 723 LSGEDQLSKQTQTLATIGYMAPE-YGTKGRVSTRGDVCSFGII 764
            +  ++L    +   +  Y APE +  K       DV S G+I
Sbjct: 163 FTFGNKLD---EFCGSPPYAAPELFQGKKYDGPEVDVWSLGVI 202

>pdb|1ZXE|A Chain A, Crystal Structure Of Eif2alpha Protein Kinase Gcn2: D835n Inactivating Mutant In Apo Form Length = 303

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/105 (34%), Positives = 47/105 (44%), Gaps = 21/105 (20%)
Query: 677 KIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAK--------------- 721
           ++    LE L + HS  IIH +LKP N+ +DE     I DFG+AK               
Sbjct: 120 RLFRQILEALSYIHSQGIIHRNLKPXNIFIDESRNVKIGDFGLAKNVHRSLDILKLDSQN 179
Query: 722 LLSGEDQLSKQTQTLATIGYMAPEY--GTKGRVSTRGDVCSFGII 764
           L    D L   T  + T  Y+A E   GT G  + + D  S GII
Sbjct: 180 LPGSSDNL---TSAIGTAXYVATEVLDGT-GHYNEKIDXYSLGII 220

>pdb|2I0V|A Chain A, C-Fms Tyrosine Kinase In Complex With A Quinolone Inhibitor Length = 335

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 47/98 (47%)
Query: 667 RKRIRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGE 726
            +++  R+L+   S   + + F  S   IH D+   NVLL    VA I DFG+A+ +  +
Sbjct: 160 EEQLSSRDLLHFSSQVAQGMAFLASKNCIHRDVAARNVLLTNGHVAKIGDFGLARDIMND 219
Query: 727 DQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
                +      + +MAPE       + + DV S+GI+
Sbjct: 220 SNYIVKGNARLPVKWMAPESIFDCVYTVQSDVWSYGIL 257

>pdb|3QAM|E Chain E, Crystal Structure Of Glu208ala Mutant Of Catalytic Subunit Of Camp- Dependent Protein Kinase Length = 350

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/64 (39%), Positives = 37/64 (57%), Gaps = 10/64 (15%)
Query: 682 SLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTL-ATIG 740
           + EYLH   S+ +I+ DLKP N+L+D+     ++DFG AK + G      +T  L  T  
Sbjct: 153 TFEYLH---SLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKG------RTWXLCGTPE 203
Query: 741 YMAP 744
           Y+AP
Sbjct: 204 YLAP 207

>pdb|2OGV|A Chain A, Crystal Structure Of The Autoinhibited Human C-Fms Kinase Domain Length = 317

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 44/92 (47%)
Query: 673 RNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQ 732
           R+L+   S   + + F  S   IH D+   NVLL    VA I DFG+A+ +  +     +
Sbjct: 152 RDLLHFSSQVAQGMAFLASKNCIHRDVAARNVLLTNGHVAKIGDFGLARDIMNDSNYIVK 211
Query: 733 TQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
                 + +MAPE       + + DV S+GI+
Sbjct: 212 GNARLPVKWMAPESIFDCVYTVQSDVWSYGIL 243

>pdb|2A19|B Chain B, Pkr Kinase Domain- Eif2alpha- Amp-Pnp Complex. Length = 284

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 6/91 (6%)
Query: 674 NLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQT 733
            L + I+  ++Y+H   S  +I+ DLKPSN+ L +     I DFG+   L  +    K+ 
Sbjct: 126 ELFEQITKGVDYIH---SKKLINRDLKPSNIFLVDTKQVKIGDFGLVTSLKND---GKRX 179
Query: 734 QTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
           ++  T+ YM+PE  +        D+ + G+I
Sbjct: 180 RSKGTLRYMSPEQISSQDYGKEVDLYALGLI 210

>pdb|2I1M|A Chain A, Cfms Tyrosine Kinase (Tie2 Kid) In Complex With An Arylamide Inhibitor Length = 333

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 44/92 (47%)
Query: 673 RNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQ 732
           R+L+   S   + + F  S   IH D+   NVLL    VA I DFG+A+ +  +     +
Sbjct: 164 RDLLHFSSQVAQGMAFLASKNCIHRDVAARNVLLTNGHVAKIGDFGLARDIMNDSNYIVK 223
Query: 733 TQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
                 + +MAPE       + + DV S+GI+
Sbjct: 224 GNARLPVKWMAPESIFDCVYTVQSDVWSYGIL 255

>pdb|3LCO|A Chain A, Inhibitor Bound To A Dfg-Out Structure Of The Kinase Domain Of Csf-1r Length = 324

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 44/92 (47%)
Query: 673 RNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQ 732
           R+L+   S   + + F  S   IH D+   NVLL    VA I DFG+A+ +  +     +
Sbjct: 158 RDLLHFSSQVAQGMAFLASKNCIHRDVAARNVLLTNGHVAKIGDFGLARDIMNDSNYIVK 217
Query: 733 TQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
                 + +MAPE       + + DV S+GI+
Sbjct: 218 GNARLPVKWMAPESIFDCVYTVQSDVWSYGIL 249

>pdb|3BEA|A Chain A, Cfms Tyrosine Kinase (Tie2 Kid) In Complex With A Pyrimidinopyridone Inhibitor Length = 333

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 44/92 (47%)
Query: 673 RNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQ 732
           R+L+   S   + + F  S   IH D+   NVLL    VA I DFG+A+ +  +     +
Sbjct: 164 RDLLHFSSQVAQGMAFLASKNCIHRDVAARNVLLTNGHVAKIGDFGLARDIMNDSNYIVK 223
Query: 733 TQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
                 + +MAPE       + + DV S+GI+
Sbjct: 224 GNARLPVKWMAPESIFDCVYTVQSDVWSYGIL 255

>pdb|4AAA|A Chain A, Crystal Structure Of The Human Cdkl2 Kinase Domain Length = 331

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 688 FGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPE 745
           F HS  IIH D+KP N+L+ +  V  + DFG A+ L+   ++      +AT  Y APE
Sbjct: 139 FCHSHNIIHRDIKPENILVSQSGVVKLCDFGFARTLAAPGEVY--DDEVATRWYRAPE 194

>pdb|3COK|A Chain A, Crystal Structure Of Plk4 Kinase Length = 278

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 38/122 (31%), Positives = 56/122 (45%), Gaps = 10/122 (8%)
Query: 673 RNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQ 732
           R+ +  I + + YLH   S  I+H DL  SN+LL  +M   I+DFG+A  L    +  K 
Sbjct: 115 RHFMHQIITGMLYLH---SHGILHRDLTLSNLLLTRNMNIKIADFGLATQLKMPHE--KH 169
Query: 733 TQTLATIGYMAPEYGTKGRVSTRGDVCSFG-----IISGGKETRSMTVGETCTPVRESKY 787
                T  Y++PE  T+       DV S G     ++ G     + TV  T   V  + Y
Sbjct: 170 YTLCGTPNYISPEIATRSAHGLESDVWSLGCMFYTLLIGRPPFDTDTVKNTLNKVVLADY 229
Query: 788 EV 789
           E+
Sbjct: 230 EM 231

>pdb|3NIZ|A Chain A, Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5_2510 With Adp Bound Length = 311

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 55/116 (47%), Gaps = 11/116 (9%)
Query: 690 HSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPE--YG 747
           H   I+H DLKP N+L++ D    ++DFG+A+       +   T  + T+ Y AP+   G
Sbjct: 136 HQHRILHRDLKPQNLLINSDGALKLADFGLARAFGIP--VRSYTHEVVTLWYRAPDVLMG 193
Query: 748 TKGRVSTRGDVCSFGIISGGKETRSMTVGETCTPVRESKYEVHPATTTIMEHPLPR 803
           +K + ST  D+ S G I        M  G+   P      ++ P   +I+  P PR
Sbjct: 194 SK-KYSTSVDIWSIGCIFA-----EMITGKPLFPGVTDDDQL-PKIFSILGTPNPR 242

>pdb|2QKR|A Chain A, Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5_2510 With Indirubin 3'-Monoxime Bound Length = 313

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 55/116 (47%), Gaps = 11/116 (9%)
Query: 690 HSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPE--YG 747
           H   I+H DLKP N+L++ D    ++DFG+A+       +   T  + T+ Y AP+   G
Sbjct: 136 HQHRILHRDLKPQNLLINSDGALKLADFGLARAFGIP--VRSYTHEVVTLWYRAPDVLMG 193
Query: 748 TKGRVSTRGDVCSFGIISGGKETRSMTVGETCTPVRESKYEVHPATTTIMEHPLPR 803
           +K + ST  D+ S G I        M  G+   P      ++ P   +I+  P PR
Sbjct: 194 SK-KYSTSVDIWSIGCIFA-----EMITGKPLFPGVTDDDQL-PKIFSILGTPNPR 242

>pdb|2ACX|A Chain A, Crystal Structure Of G Protein Coupled Receptor Kinase 6 Bound To Amppnp Length = 576

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 34/111 (30%), Positives = 50/111 (45%), Gaps = 8/111 (7%)
Query: 690 HSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTK 749
           H   I++ DLKP N+LLD+     ISD G+A  +  E Q  K    + T+GYMAPE    
Sbjct: 303 HRERIVYRDLKPENILLDDHGHIRISDLGLAVHVP-EGQTIK--GRVGTVGYMAPEVVKN 359
Query: 750 GRVSTRGDVCSFGIISGGKETRSMTVGETCTPVRESKYEVHPATTTIMEHP 800
            R +   D  + G +        M  G++    R+ K +       + E P
Sbjct: 360 ERYTFSPDWWALGCL-----LYEMIAGQSPFQQRKKKIKREEVERLVKEVP 405

>pdb|3V3V|A Chain A, Structural And Functional Analysis Of Quercetagetin, A Natural Jnk1 Inhibitor Length = 379

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 57/215 (26%), Positives = 88/215 (40%), Gaps = 42/215 (19%)
Query: 610 NSPQAIRRFSYHELLRATDRFSENNLIGIGNGMEVAVKVFHQQYERALKSFEDECEVRKR 669
           N   A R +    L++  +     N+IG+ N       VF  Q  ++L+ F+D   +   
Sbjct: 63  NQTHAKRAYRELVLMKCVNH---KNIIGLLN-------VFTPQ--KSLEEFQD-VYIVME 109
Query: 670 IRHRNLVKIISSSLE-----YLHFG--------HSIPIIHCDLKPSNVLLDEDMVAHISD 716
           +   NL ++I   L+     YL +         HS  IIH DLKPSN+++  D    I D
Sbjct: 110 LMDANLCQVIQMELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILD 169
Query: 717 FGIAKLLSGEDQLSKQTQTLATIGYMAPE----YGTKGRVSTRGDVCSFG-IISGGK--- 768
           FG+A+       +   T  + T  Y APE     G K  V      C  G +I GG    
Sbjct: 170 FGLARTAGTSFMM---TPEVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVLFP 226
Query: 769 -----ETRSMTVGETCTPVRESKYEVHPATTTIME 798
                +  +  + +  TP  E   ++ P   T +E
Sbjct: 227 GTDHIDQWNKVIEQLGTPCPEFMKKLQPTVRTYVE 261

>pdb|1RDQ|E Chain E, Hydrolysis Of Atp In The Crystal Of Y204a Mutant Of Camp-Dependent Protein Kinase Length = 350

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 19/44 (43%), Positives = 29/44 (65%), Gaps = 3/44 (6%)
Query: 682 SLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSG 725
           + EYLH   S+ +I+ DLKP N+L+D+     ++DFG AK + G
Sbjct: 153 TFEYLH---SLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKG 193

>pdb|4APC|A Chain A, Crystal Structure Of Human Nima-Related Kinase 1 (Nek1) Length = 350

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 21/75 (28%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Query: 690 HSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTK 749
           H   I+H D+K  N+ L +D    + DFGIA++L+   +L++    + T  Y++PE    
Sbjct: 142 HDRKILHRDIKSQNIFLTKDGTVQLGDFGIARVLNSTVELAR--ACIGTPYYLSPEICEN 199
Query: 750 GRVSTRGDVCSFGII 764
              + + D+ + G +
Sbjct: 200 KPYNNKSDIWALGCV 214

>pdb|2X9E|A Chain A, Human Mps1 In Complex With Nms-P715 Length = 317

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 36/108 (33%), Positives = 49/108 (45%), Gaps = 19/108 (17%)
Query: 683 LEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYM 742
           LE +H  H   I+H DLKP+N L+ + M+  I DFGIA  +  +     +   + T+ YM
Sbjct: 121 LEAVHTIHQHGIVHSDLKPANFLIVDGMLKLI-DFGIANQMQPDTTSVVKDSQVGTVNYM 179
Query: 743 APEYGTKGRVSTR------------GDVCSFGIISGGKETRSMTVGET 778
            PE   K   S+R             DV S G I        MT G+T
Sbjct: 180 PPE-AIKDMSSSRENGKSKSKISPKSDVWSLGCI-----LYYMTYGKT 221

>pdb|3P23|A Chain A, Crystal Structure Of The Human Kinase And Rnase Domains In Complex With Adp Length = 432

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/77 (37%), Positives = 45/77 (58%), Gaps = 9/77 (11%)
Query: 675 LVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDE-----DMVAHISDFGIAKLLS-GEDQ 728
           L++  +S L +LH   S+ I+H DLKP N+L+        + A ISDFG+ K L+ G   
Sbjct: 123 LLQQTTSGLAHLH---SLNIVHRDLKPHNILISMPNAHGKIKAMISDFGLCKKLAVGRHS 179
Query: 729 LSKQTQTLATIGYMAPE 745
            S+++    T G++APE
Sbjct: 180 FSRRSGVPGTEGWIAPE 196

>pdb|1YVJ|A Chain A, Crystal Structure Of The Jak3 Kinase Domain In Complex With A Staurosporine Analogue Length = 290

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 45/87 (51%), Gaps = 4/87 (4%)
Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLS-GEDQLSKQTQTLA 737
           I   +EYL    S   +H DL   N+L++ +    I+DFG+AKLL   +D    +    +
Sbjct: 120 ICKGMEYLG---SRRCVHRDLAARNILVESEAHVKIADFGLAKLLPLDKDXXVVREPGQS 176
Query: 738 TIGYMAPEYGTKGRVSTRGDVCSFGII 764
            I + APE  +    S + DV SFG++
Sbjct: 177 PIFWYAPESLSDNIFSRQSDVWSFGVV 203

>pdb|3DXN|A Chain A, Crystal Structure Of The Calcium-dependent Kinase From Toxoplasma Gondii, 541.m00134, Kinase Domain Length = 287

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 51/107 (47%), Gaps = 9/107 (8%)
Query: 662 DECEVRKRIRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLD---EDMVAHISDFG 718
           DE  +R++    +   I+   L    + H   I+H DLKP N+LL+    D +  I DFG
Sbjct: 110 DEIILRQKFSEVDAAVIMKQVLSGTTYLHKHNIVHRDLKPENLLLESKSRDALIKIVDFG 169
Query: 719 I-AKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
           + A    G     K  + L T  Y+APE   K +   + DV S G+I
Sbjct: 170 LSAHFEVG----GKMKERLGTAYYIAPEVLRK-KYDEKCDVWSCGVI 211

>pdb|3NYN|A Chain A, Crystal Structure Of G Protein-Coupled Receptor Kinase 6 In Complex With Sangivamycin Length = 576

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 38/122 (31%), Positives = 54/122 (44%), Gaps = 11/122 (9%)
Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLAT 738
           I   LE LH      I++ DLKP N+LLD+     ISD G+A  +  E Q  K    + T
Sbjct: 295 ICCGLEDLHRER---IVYRDLKPENILLDDHGHIRISDLGLAVHVP-EGQTIK--GRVGT 348
Query: 739 IGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGETCTPVRESKYEVHPATTTIME 798
           +GYMAPE     R +   D  + G +        M  G++    R+ K +       + E
Sbjct: 349 VGYMAPEVVKNERYTFSPDWWALGCL-----LYEMIAGQSPFQQRKKKIKREEVERLVKE 403
Query: 799 HP 800
            P
Sbjct: 404 VP 405

>pdb|2QNJ|A Chain A, Kinase And Ubiquitin-Associated Domains Of Mark3PAR-1 Length = 328

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 48/158 (30%), Positives = 66/158 (41%), Gaps = 20/158 (12%)
Query: 663 ECEVRKRIRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKL 722
           E E R + R       I S+++Y H      I+H DLK  N+LLD DM   I+DFG    
Sbjct: 110 EKEARSKFRQ------IVSAVQYCH---QKRIVHRDLKAENLLLDADMNIKIADFG---- 156
Query: 723 LSGEDQLSKQTQTL-ATIGYMAPE-YGTKGRVSTRGDVCSFGII-----SGGKETRSMTV 775
            S E  +  +  T   +  Y APE +  K       DV S G+I     SG        +
Sbjct: 157 FSNEFTVGGKLDTFCGSPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDGQNL 216
Query: 776 GETCTPVRESKYEVHPATTTIMEHPLPRVGEVMDVDRG 813
            E    V   KY +    +T  E+ L R   +  + RG
Sbjct: 217 KELRERVLRGKYRIPFYMSTDCENLLKRFLVLNPIKRG 254

>pdb|1KWP|A Chain A, Crystal Structure Of Mapkap2 Length = 400

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 46/95 (48%), Gaps = 6/95 (6%)
Query: 673 RNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDE---DMVAHISDFGIAKLLSGEDQL 729
           R   +I+ S  E + + HSI I H D+KP N+L      + +  ++DFG AK  +  + L
Sbjct: 161 REASEIMKSIGEAIQYLHSINIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTSHNSL 220
Query: 730 SKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
              T    T  Y+APE     +     D+ S G+I
Sbjct: 221 ---TTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVI 252

>pdb|3FPM|A Chain A, Crystal Structure Of A Squarate Inhibitor Bound To Mapkap Kinase-2 Length = 325

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 46/95 (48%), Gaps = 6/95 (6%)
Query: 673 RNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDE---DMVAHISDFGIAKLLSGEDQL 729
           R   +I+ S  E + + HSI I H D+KP N+L      + +  ++DFG AK  +  + L
Sbjct: 122 REASEIMKSIGEAIQYLHSINIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTSHNSL 181
Query: 730 SKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
              T    T  Y+APE     +     D+ S G+I
Sbjct: 182 ---TTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVI 213

>pdb|2JBO|A Chain A, Protein Kinase Mk2 In Complex With An Inhibitor (Crystal Form-1, Soaking) Length = 326

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 46/95 (48%), Gaps = 6/95 (6%)
Query: 673 RNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDE---DMVAHISDFGIAKLLSGEDQL 729
           R   +I+ S  E + + HSI I H D+KP N+L      + +  ++DFG AK  +  + L
Sbjct: 123 REASEIMKSIGEAIQYLHSINIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTSHNSL 182
Query: 730 SKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
              T    T  Y+APE     +     D+ S G+I
Sbjct: 183 ---TTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVI 214

>pdb|3QUP|A Chain A, Inhibitor Bound Structure Of The Kinase Domain Of The Murine Receptor Tyrosine Kinase Tyro3 (Sky) Length = 323

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 44/96 (45%), Gaps = 3/96 (3%)
Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLAT 738
           I+  +EYL    S   IH DL   N +L EDM   ++DFG+++ +   D   +   +   
Sbjct: 146 IACGMEYLS---SRNFIHRDLAARNCMLAEDMTVCVADFGLSRKIYSGDYYRQGCASKLP 202
Query: 739 IGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMT 774
           + ++A E       +   DV +FG+      TR  T
Sbjct: 203 VKWLALESLADNLYTVHSDVWAFGVTMWEIMTRGQT 238

>pdb|3LCD|A Chain A, Inhibitor Bound To A Dfg-In Structure Of The Kinase Domain Of Csf-1r Length = 329

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 44/92 (47%)
Query: 673 RNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQ 732
           R+L+   S   + + F  S   IH D+   NVLL    VA I DFG+A+ +  +     +
Sbjct: 160 RDLLHFSSQVAQGMAFLASKNCIHRDVAARNVLLTNGHVAKIGDFGLARDIMNDSNYIVK 219
Query: 733 TQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
                 + +MAPE       + + DV S+GI+
Sbjct: 220 GNARLPVKWMAPESIFDCVYTVQSDVWSYGIL 251

>pdb|3O8P|A Chain A, Conformational Plasticity Of P38 Map Kinase Dfg Motif Mutants In Response To Inhibitor Binding Length = 360

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
Query: 678 IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLA 737
           +I   L  L + HS  IIH DLKPSN+ ++ED    I  FG+A+    E      T  +A
Sbjct: 130 LIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILGFGLARHTDDE-----MTGYVA 184
Query: 738 TIGYMAPE 745
           T  Y APE
Sbjct: 185 TRWYRAPE 192

>pdb|2PZY|A Chain A, Structure Of Mk2 Complexed With Compound 76 Length = 324

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 46/95 (48%), Gaps = 6/95 (6%)
Query: 673 RNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDE---DMVAHISDFGIAKLLSGEDQL 729
           R   +I+ S  E + + HSI I H D+KP N+L      + +  ++DFG AK  +  + L
Sbjct: 121 REASEIMKSIGEAIQYLHSINIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTSHNSL 180
Query: 730 SKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
              T    T  Y+APE     +     D+ S G+I
Sbjct: 181 ---TTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVI 212

>pdb|2ONL|C Chain C, Crystal Structure Of The P38a-Mapkap Kinase 2 Heterodimer Length = 406

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 46/95 (48%), Gaps = 6/95 (6%)
Query: 673 RNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDE---DMVAHISDFGIAKLLSGEDQL 729
           R   +I+ S  E + + HSI I H D+KP N+L      + +  ++DFG AK  +  + L
Sbjct: 167 REASEIMKSIGEAIQYLHSINIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTSHNSL 226
Query: 730 SKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
              T    T  Y+APE     +     D+ S G+I
Sbjct: 227 ---TTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVI 258

>pdb|3H4J|B Chain B, Crystal Structure Of Pombe Ampk Kdaid Fragment Length = 336

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 49/93 (52%), Gaps = 7/93 (7%)
Query: 673 RNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQ 732
           R   + I  ++EY H  H I  +H DLKP N+LLD+++   I+DFG++ +++  + L   
Sbjct: 111 RRFFQQIICAIEYCH-RHKI--VHRDLKPENLLLDDNLNVKIADFGLSNIMTDGNFLK-- 165
Query: 733 TQTLATIGYMAPEY-GTKGRVSTRGDVCSFGII 764
             +  +  Y APE    K       DV S GI+
Sbjct: 166 -TSCGSPNYAAPEVINGKLYAGPEVDVWSCGIV 197

>pdb|3Q4T|A Chain A, Crystal Structure Of Activin Receptor Type-Iia (Acvr2a) Kinase Domain In Complex With Dorsomorphin Length = 322

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 29/80 (36%), Positives = 42/80 (52%), Gaps = 9/80 (11%)
Query: 674 NLVKIISSSLEYLHF-------GHSIPIIHCDLKPSNVLLDEDMVAHISDFGIA-KLLSG 725
           ++ + ++  L YLH        GH   I H D+K  NVLL  ++ A I+DFG+A K  +G
Sbjct: 125 HIAETMARGLAYLHEDIPGLKDGHKPAISHRDIKSKNVLLKNNLTACIADFGLALKFEAG 184
Query: 726 EDQLSKQTQTLATIGYMAPE 745
           +       Q + T  YMAPE
Sbjct: 185 KSAGDTHGQ-VGTRRYMAPE 203

>pdb|3GI3|A Chain A, Crystal Structure Of A N-Phenyl-N'-Naphthylurea Analog In Complex With P38 Map Kinase Length = 360

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
Query: 678 IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLA 737
           +I   L  L + HS  IIH DLKPSN+ ++ED    I DF +A+    E      T  +A
Sbjct: 130 LIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFYLARHTDDE-----MTGYVA 184
Query: 738 TIGYMAPE 745
           T  Y APE
Sbjct: 185 TRWYRAPE 192

>pdb|2R9S|A Chain A, C-Jun N-Terminal Kinase 3 With 3,5-Disubstituted Quinoline Inhibitor Length = 356

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 45/101 (44%), Gaps = 3/101 (2%)
Query: 666 VRKRIRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSG 725
           ++  + H  +  ++   L  +   HS  IIH DLKPSN+++  D    I DFG+A+    
Sbjct: 112 IQMELDHERMSYLLYQMLXGIKHLHSAGIIHRDLKPSNIVVKSDXTLKILDFGLARTAGT 171
Query: 726 EDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISG 766
              +   T  + T  Y APE           D+ S G I G
Sbjct: 172 SFMM---TPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMG 209

>pdb|2HAK|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1 Length = 328

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 36/104 (34%), Positives = 49/104 (47%), Gaps = 15/104 (14%)
Query: 663 ECEVRKRIRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKL 722
           E E R + R       I S+++Y H  +   I+H DLK  N+LLD DM   I+DFG    
Sbjct: 113 EKEARAKFRQ------IVSAVQYCHQKY---IVHRDLKAENLLLDGDMNIKIADFG---- 159
Query: 723 LSGEDQLSKQTQTL-ATIGYMAPE-YGTKGRVSTRGDVCSFGII 764
            S E  +  +  T   +  Y APE +  K       DV S G+I
Sbjct: 160 FSNEFTVGNKLDTFCGSPPYAAPELFQGKKYDGPEVDVWSLGVI 203

>pdb|3R2B|A Chain A, Mk2 Kinase Bound To Compound 5b Length = 318

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 46/95 (48%), Gaps = 6/95 (6%)
Query: 673 RNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDE---DMVAHISDFGIAKLLSGEDQL 729
           R   +I+ S  E + + HSI I H D+KP N+L      + +  ++DFG AK  +  + L
Sbjct: 115 REASEIMKSIGEAIQYLHSINIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTSHNSL 174
Query: 730 SKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
              T    T  Y+APE     +     D+ S G+I
Sbjct: 175 ---TTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVI 206

>pdb|3R2Y|A Chain A, Mk2 Kinase Bound To Compound 1 Length = 319

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 46/95 (48%), Gaps = 6/95 (6%)
Query: 673 RNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDE---DMVAHISDFGIAKLLSGEDQL 729
           R   +I+ S  E + + HSI I H D+KP N+L      + +  ++DFG AK  +  + L
Sbjct: 116 REASEIMKSIGEAIQYLHSINIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTSHNSL 175
Query: 730 SKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
              T    T  Y+APE     +     D+ S G+I
Sbjct: 176 ---TTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVI 207

>pdb|3HZT|A Chain A, Crystal Structure Of Toxoplasma Gondii Cdpk3, Tgme49_105860 Length = 467

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 51/107 (47%), Gaps = 9/107 (8%)
Query: 662 DECEVRKRIRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLD---EDMVAHISDFG 718
           DE  +R++    +   I+   L    + H   I+H DLKP N+LL+    D +  I DFG
Sbjct: 93  DEIILRQKFSEVDAAVIMKQVLSGTTYLHKHNIVHRDLKPENLLLESKSRDALIKIVDFG 152
Query: 719 I-AKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
           + A    G     K  + L T  Y+APE   K +   + DV S G+I
Sbjct: 153 LSAHFEVG----GKMKERLGTAYYIAPEVLRK-KYDEKCDVWSCGVI 194

>pdb|3CEK|A Chain A, Crystal Structure Of Human Dual Specificity Protein Kinase (ttk) Length = 313

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 36/108 (33%), Positives = 49/108 (45%), Gaps = 19/108 (17%)
Query: 683 LEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYM 742
           LE +H  H   I+H DLKP+N L+ + M+  I DFGIA  +  +     +   + T+ YM
Sbjct: 137 LEAVHTIHQHGIVHSDLKPANFLIVDGMLKLI-DFGIANQMQPDTTSVVKDSQVGTVNYM 195
Query: 743 APEYGTKGRVSTR------------GDVCSFGIISGGKETRSMTVGET 778
            PE   K   S+R             DV S G I        MT G+T
Sbjct: 196 PPE-AIKDMSSSRENGKSKSKISPKSDVWSLGCI-----LYYMTYGKT 237

>pdb|3KVX|A Chain A, Jnk3 Bound To Aminopyrimidine Inhibitor, Sr-3562 Length = 364

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 45/101 (44%), Gaps = 3/101 (2%)
Query: 666 VRKRIRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSG 725
           ++  + H  +  ++   L  +   HS  IIH DLKPSN+++  D    I DFG+A+    
Sbjct: 119 IQMELDHERMSYLLYQMLXGIKHLHSAGIIHRDLKPSNIVVKSDXTLKILDFGLARTAGT 178
Query: 726 EDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISG 766
              +   T  + T  Y APE           D+ S G I G
Sbjct: 179 SFMM---TPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMG 216

>pdb|3PJC|A Chain A, Crystal Structure Of Jak3 Complexed With A Potent Atp Site Inhibitor Showing High Selectivity Within The Janus Kinase Family Length = 315

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 45/87 (51%), Gaps = 4/87 (4%)
Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLS-GEDQLSKQTQTLA 737
           I   +EYL    S   +H DL   N+L++ +    I+DFG+AKLL   +D    +    +
Sbjct: 124 ICKGMEYLG---SRRCVHRDLAARNILVESEAHVKIADFGLAKLLPLDKDYYVVREPGQS 180
Query: 738 TIGYMAPEYGTKGRVSTRGDVCSFGII 764
            I + APE  +    S + DV SFG++
Sbjct: 181 PIFWYAPESLSDNIFSRQSDVWSFGVV 207

>pdb|4HVD|A Chain A, Jak3 Kinase Domain In Complex With 2-cyclopropyl-5h-pyrrolo[2,3- B]pyrazine-7-carboxylic Acid ((s)-1,2,2-trimethyl-propyl)-amide Length = 314

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 45/87 (51%), Gaps = 4/87 (4%)
Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLS-GEDQLSKQTQTLA 737
           I   +EYL    S   +H DL   N+L++ +    I+DFG+AKLL   +D    +    +
Sbjct: 123 ICKGMEYLG---SRRCVHRDLAARNILVESEAHVKIADFGLAKLLPLDKDYYVVREPGQS 179
Query: 738 TIGYMAPEYGTKGRVSTRGDVCSFGII 764
            I + APE  +    S + DV SFG++
Sbjct: 180 PIFWYAPESLSDNIFSRQSDVWSFGVV 206

>pdb|3VQU|A Chain A, Crystal Structure Of Human Mps1 Catalytic Domain In Complex With 4- [(4-Amino-5-Cyano-6-Ethoxypyridin-2- Yl)amino]benzamide Length = 320

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 36/108 (33%), Positives = 49/108 (45%), Gaps = 19/108 (17%)
Query: 683 LEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYM 742
           LE +H  H   I+H DLKP+N L+ + M+  I DFGIA  +  +     +   + T+ YM
Sbjct: 117 LEAVHTIHQHGIVHSDLKPANFLIVDGMLKLI-DFGIANQMQPDTTSVVKDSQVGTVNYM 175
Query: 743 APEYGTKGRVSTR------------GDVCSFGIISGGKETRSMTVGET 778
            PE   K   S+R             DV S G I        MT G+T
Sbjct: 176 PPE-AIKDMSSSRENGKSKSKISPKSDVWSLGCI-----LYYMTYGKT 217

>pdb|3E7O|A Chain A, Crystal Structure Of Jnk2 Length = 360

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 39/126 (30%), Positives = 57/126 (45%), Gaps = 17/126 (13%)
Query: 654 ERALKSFEDECEVRKRIRHRNLVKIISSSLE-----YLHFG--------HSIPIIHCDLK 700
           ++ L+ F+D   V + +   NL ++I   L+     YL +         HS  IIH DLK
Sbjct: 93  QKTLEEFQDVYLVME-LMDANLCQVIHMELDHERMSYLLYQMLCGIKHLHSAGIIHRDLK 151
Query: 701 PSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCS 760
           PSN+++  D    I DFG+A+  S    +   T  + T  Y APE           D+ S
Sbjct: 152 PSNIVVKSDCTLKILDFGLARTASTNFMM---TPYVVTRYYRAPEVILGMGYKENVDIWS 208
Query: 761 FGIISG 766
            G I G
Sbjct: 209 VGCIMG 214

>pdb|1UKH|A Chain A, Structural Basis For The Selective Inhibition Of Jnk1 By The Scaffolding Protein Jip1 And Sp600125 Length = 369

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 57/215 (26%), Positives = 88/215 (40%), Gaps = 42/215 (19%)
Query: 610 NSPQAIRRFSYHELLRATDRFSENNLIGIGNGMEVAVKVFHQQYERALKSFEDECEVRKR 669
           N   A R +    L++  +     N+IG+ N       VF  Q  ++L+ F+D   +   
Sbjct: 63  NQTHAKRAYRELVLMKCVNH---KNIIGLLN-------VFTPQ--KSLEEFQD-VYIVME 109
Query: 670 IRHRNLVKIISSSLE-----YLHFG--------HSIPIIHCDLKPSNVLLDEDMVAHISD 716
           +   NL ++I   L+     YL +         HS  IIH DLKPSN+++  D    I D
Sbjct: 110 LMDANLCQVIQMELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILD 169
Query: 717 FGIAKLLSGEDQLSKQTQTLATIGYMAPE----YGTKGRVSTRGDVCSFG-IISGGK--- 768
           FG+A+       +   T  + T  Y APE     G K  V      C  G +I GG    
Sbjct: 170 FGLARTAGTSFMM---TPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVLFP 226
Query: 769 -----ETRSMTVGETCTPVRESKYEVHPATTTIME 798
                +  +  + +  TP  E   ++ P   T +E
Sbjct: 227 GTDHIDQWNKVIEQLGTPCPEFMKKLQPTVRTYVE 261

>pdb|2XRW|A Chain A, Linear Binding Motifs For Jnk And For Calcineurin Antagonistically Control The Nuclear Shuttling Of Nfat4 Length = 371

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 57/215 (26%), Positives = 88/215 (40%), Gaps = 42/215 (19%)
Query: 610 NSPQAIRRFSYHELLRATDRFSENNLIGIGNGMEVAVKVFHQQYERALKSFEDECEVRKR 669
           N   A R +    L++  +     N+IG+ N       VF  Q  ++L+ F+D   +   
Sbjct: 64  NQTHAKRAYRELVLMKCVNH---KNIIGLLN-------VFTPQ--KSLEEFQD-VYIVME 110
Query: 670 IRHRNLVKIISSSLE-----YLHFG--------HSIPIIHCDLKPSNVLLDEDMVAHISD 716
           +   NL ++I   L+     YL +         HS  IIH DLKPSN+++  D    I D
Sbjct: 111 LMDANLCQVIQMELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILD 170
Query: 717 FGIAKLLSGEDQLSKQTQTLATIGYMAPE----YGTKGRVSTRGDVCSFG-IISGGK--- 768
           FG+A+       +   T  + T  Y APE     G K  V      C  G +I GG    
Sbjct: 171 FGLARTAGTSFMM---TPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVLFP 227
Query: 769 -----ETRSMTVGETCTPVRESKYEVHPATTTIME 798
                +  +  + +  TP  E   ++ P   T +E
Sbjct: 228 GTDHIDQWNKVIEQLGTPCPEFMKKLQPTVRTYVE 262

>pdb|3GOK|A Chain A, Binding Site Mapping Of Protein Ligands Length = 334

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 46/95 (48%), Gaps = 6/95 (6%)
Query: 673 RNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDE---DMVAHISDFGIAKLLSGEDQL 729
           R   +I+ S  E + + HSI I H D+KP N+L      + +  ++DFG AK  +  + L
Sbjct: 131 REASEIMKSIGEAIQYLHSINIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTSHNSL 190
Query: 730 SKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
              T    T  Y+APE     +     D+ S G+I
Sbjct: 191 ---TTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVI 222

>pdb|2OZA|A Chain A, Structure Of P38alpha Complex Length = 356

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 46/95 (48%), Gaps = 6/95 (6%)
Query: 673 RNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDE---DMVAHISDFGIAKLLSGEDQL 729
           R   +I+ S  E + + HSI I H D+KP N+L      + +  ++DFG AK  +  + L
Sbjct: 117 REASEIMKSIGEAIQYLHSINIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTSHNSL 176
Query: 730 SKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
              T    T  Y+APE     +     D+ S G+I
Sbjct: 177 ---TTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVI 208

>pdb|3LXK|A Chain A, Structural And Thermodynamic Characterization Of The Tyk2 And Jak3 Kinase Domains In Complex With Cp-690550 And Cmp-6 Length = 327

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 45/87 (51%), Gaps = 4/87 (4%)
Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLS-GEDQLSKQTQTLA 737
           I   +EYL    S   +H DL   N+L++ +    I+DFG+AKLL   +D    +    +
Sbjct: 136 ICKGMEYLG---SRRCVHRDLAARNILVESEAHVKIADFGLAKLLPLDKDYYVVREPGQS 192
Query: 738 TIGYMAPEYGTKGRVSTRGDVCSFGII 764
            I + APE  +    S + DV SFG++
Sbjct: 193 PIFWYAPESLSDNIFSRQSDVWSFGVV 219

>pdb|3DBQ|A Chain A, Crystal Structure Of Ttk Kinase Domain Length = 343

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 36/108 (33%), Positives = 49/108 (45%), Gaps = 19/108 (17%)
Query: 683 LEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYM 742
           LE +H  H   I+H DLKP+N L+ + M+  I DFGIA  +  +     +   + T+ YM
Sbjct: 118 LEAVHTIHQHGIVHSDLKPANFLIVDGMLKLI-DFGIANQMQPDTTSVVKDSQVGTVNYM 176
Query: 743 APEYGTKGRVSTR------------GDVCSFGIISGGKETRSMTVGET 778
            PE   K   S+R             DV S G I        MT G+T
Sbjct: 177 PPE-AIKDMSSSRENGKSKSKISPKSDVWSLGCI-----LYYMTYGKT 218

>pdb|2P3G|X Chain X, Crystal Structure Of A Pyrrolopyridine Inhibitor Bound To Mapkap Kinase-2 Length = 327

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 46/95 (48%), Gaps = 6/95 (6%)
Query: 673 RNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDE---DMVAHISDFGIAKLLSGEDQL 729
           R   +I+ S  E + + HSI I H D+KP N+L      + +  ++DFG AK  +  + L
Sbjct: 117 REASEIMKSIGEAIQYLHSINIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTSHNSL 176
Query: 730 SKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
              T    T  Y+APE     +     D+ S G+I
Sbjct: 177 ---TTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVI 208

>pdb|3FI3|A Chain A, Crystal Structure Of Jnk3 With Indazole Inhibitor, Sr-3737 Length = 364

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 45/101 (44%), Gaps = 3/101 (2%)
Query: 666 VRKRIRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSG 725
           ++  + H  +  ++   L  +   HS  IIH DLKPSN+++  D    I DFG+A+    
Sbjct: 119 IQMELDHERMSYLLYQMLXGIKHLHSAGIIHRDLKPSNIVVKSDXTLKILDFGLARTAGT 178
Query: 726 EDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISG 766
              +   T  + T  Y APE           D+ S G I G
Sbjct: 179 SFMM---TPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMG 216

>pdb|3MH0|A Chain A, Mutagenesis Of P38 Map Kinase Eshtablishes Key Roles Of Phe169 In Function And Structural Dynamics And Reveals A Novel Dfg-Out State Length = 360

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
Query: 678 IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLA 737
           +I   L  L + HS  IIH DLKPSN+ ++ED    I D G+A+    E      T  +A
Sbjct: 130 LIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDAGLARHTDDE-----MTGYVA 184
Query: 738 TIGYMAPE 745
           T  Y APE
Sbjct: 185 TRWYRAPE 192

>pdb|2W4O|A Chain A, Crystal Structure Of Human Camk4 In Complex With 4-Amino( Sulfamoyl-Phenylamino)-Triazole-Carbothioic Acid (2,6- Difluoro-Phenyl)-Amide) Length = 349

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 47/97 (48%), Gaps = 6/97 (6%)
Query: 672 HRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDE---DMVAHISDFGIAKLLSGEDQ 728
            R+    +   LE + + H   I+H DLKP N+L      D    I+DFG++K++  E Q
Sbjct: 147 ERDAADAVKQILEAVAYLHENGIVHRDLKPENLLYATPAPDAPLKIADFGLSKIV--EHQ 204
Query: 729 LSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIIS 765
           +  +T    T GY APE           D+ S GII+
Sbjct: 205 VLMKT-VCGTPGYCAPEILRGCAYGPEVDMWSVGIIT 240

>pdb|3VUK|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M5 In Map Kinase Jnk1 Length = 370

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 47/151 (31%), Positives = 67/151 (44%), Gaps = 34/151 (22%)
Query: 633 NNLIGIGNGMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVKIISSSLE-----YLH 687
            N+IG+ N       VF  Q  ++L+ F+D   +   +   NL ++I   L+     YL 
Sbjct: 83  KNIIGLLN-------VFTPQ--KSLEEFQD-VYIVMELMDANLSQVIQMELDHERMSYLL 132
Query: 688 FG--------HSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATI 739
           +         HS  IIH DLKPSN+++  D    I DFG+A+       +   T  + T 
Sbjct: 133 YQMLVGIKHLHSAGIIHRDLKPSNIVVKSDATLKILDFGLARTAGTSFMM---TPYVVTR 189
Query: 740 GYMAPE----YGTKGRVSTRGDVCSFGIISG 766
            Y APE     G K  V    D+ S G I G
Sbjct: 190 YYRAPEVILGMGYKENV----DIWSVGCIMG 216

>pdb|3MH3|A Chain A, Mutagenesis Of P38 Map Kinase Establishes Key Roles Of Phe169 In Function And Structural Dynamics And Reveals A Novel Dfg-Out State Length = 360

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
Query: 678 IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLA 737
           +I   L  L + HS  IIH DLKPSN+ ++ED    I D G+A+    E      T  +A
Sbjct: 130 LIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDRGLARHTDDE-----MTGYVA 184
Query: 738 TIGYMAPE 745
           T  Y APE
Sbjct: 185 TRWYRAPE 192

>pdb|3RNY|A Chain A, Crystal Structure Of Human Rsk1 C-Terminal Kinase Domain Length = 346

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 47/94 (50%), Gaps = 9/94 (9%)
Query: 675 LVKIISSSLEYLHFGHSIPIIHCDLKPSNVL-LDED---MVAHISDFGIAKLLSGEDQLS 730
           ++  I  ++EYLH   S  ++H DLKPSN+L +DE        I DFG AK L  E+ L 
Sbjct: 126 VLHTIGKTVEYLH---SQGVVHRDLKPSNILYVDESGNPECLRICDFGFAKQLRAENGL- 181
Query: 731 KQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
                  T  ++APE   +       D+ S GI+
Sbjct: 182 -LMTPCYTANFVAPEVLKRQGYDEGCDIWSLGIL 214

>pdb|2QLU|A Chain A, Crystal Structure Of Activin Receptor Type Ii Kinase Domain From Human Length = 314

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 36/80 (45%), Gaps = 8/80 (10%)
Query: 674 NLVKIISSSLEYLHF--------GHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSG 725
           ++ + +S  L YLH         GH   I H D K  NVLL  D+ A ++DFG+A     
Sbjct: 116 HVAETMSRGLSYLHEDVPWCRGEGHKPSIAHRDFKSKNVLLKSDLTAVLADFGLAVRFEP 175
Query: 726 EDQLSKQTQTLATIGYMAPE 745
                     + T  YMAPE
Sbjct: 176 GKPPGDTHGQVGTRRYMAPE 195

>pdb|3VUI|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M2 In Map Kinase Jnk1 Length = 370

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 75/174 (43%), Gaps = 37/174 (21%)
Query: 610 NSPQAIRRFSYHELLRATDRFSENNLIGIGNGMEVAVKVFHQQYERALKSFEDECEVRKR 669
           N   A R +    L++  +     N+IG+ N       VF  Q  ++L+ F+D   +   
Sbjct: 63  NQTHAKRAYRELVLMKVVNH---KNIIGLLN-------VFTPQ--KSLEEFQD-VYIVME 109
Query: 670 IRHRNLVKIISSSLE-----YLHFG--------HSIPIIHCDLKPSNVLLDEDMVAHISD 716
           +   NL ++I   L+     YL +         HS  IIH DLKPSN+++  D    I D
Sbjct: 110 LMDANLSQVIQMELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDATLKILD 169
Query: 717 FGIAKLLSGEDQLSKQTQTLATIGYMAPE----YGTKGRVSTRGDVCSFGIISG 766
           FG+A+       +   T  + T  Y APE     G K  V    D+ S G I G
Sbjct: 170 FGLARTAGTSFMM---TPYVVTRYYRAPEVILGMGYKENV----DIWSVGCIMG 216

>pdb|4EC8|A Chain A, Structure Of Full Length Cdk9 In Complex With Cyclint And Drb Length = 373

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 677 KIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKL--LSGEDQLSKQTQ 734
           +++   L  L++ H   I+H D+K +NVL+  D V  ++DFG+A+   L+   Q ++   
Sbjct: 129 RVMQMLLNGLYYIHRNKILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNSQPNRYXN 188
Query: 735 TLATIGYMAPE 745
            + T+ Y  PE
Sbjct: 189 RVVTLWYRPPE 199

>pdb|2R0I|A Chain A, Crystal Structure Of A Kinase Mark2PAR-1 Mutant Length = 327

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 36/104 (34%), Positives = 47/104 (45%), Gaps = 15/104 (14%)
Query: 663 ECEVRKRIRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKL 722
           E E R + R       I S+++Y H      I+H DLK  N+LLD DM   I+DFG    
Sbjct: 112 EKEARAKFRQ------IVSAVQYCH---QKFIVHRDLKAENLLLDADMNIKIADFG---- 158
Query: 723 LSGEDQLSKQTQTL-ATIGYMAPE-YGTKGRVSTRGDVCSFGII 764
            S E     +  T   +  Y APE +  K       DV S G+I
Sbjct: 159 FSNEFTFGNKLDTFCGSPPYAAPELFQGKKYDGPEVDVWSLGVI 202

>pdb|3VUH|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M3 In Map Kinase Jnk1 Length = 370

Iteration: 1
 Score = 43.1 bits (100), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 47/151 (31%), Positives = 67/151 (44%), Gaps = 34/151 (22%)
Query: 633 NNLIGIGNGMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVKIISSSLE-----YLH 687
            N+IG+ N       VF  Q  ++L+ F+D   +   +   NL ++I   L+     YL 
Sbjct: 83  KNIIGLLN-------VFTPQ--KSLEEFQD-VYIVMELMDANLSQVIQMELDHERMSYLL 132
Query: 688 FG--------HSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATI 739
           +         HS  IIH DLKPSN+++  D    I DFG+A+       +   T  + T 
Sbjct: 133 YQMLCGIKHLHSAGIIHRDLKPSNIVVKSDATLKILDFGLARTAGTSFMM---TPYVVTR 189
Query: 740 GYMAPE----YGTKGRVSTRGDVCSFGIISG 766
            Y APE     G K  V    D+ S G I G
Sbjct: 190 YYRAPEVILGMGYKENV----DIWSVGCIMG 216

>pdb|3IEC|A Chain A, Helicobacter Pylori Caga Inhibits Par1MARK FAMILY KINASES BY Mimicking Host Substrates Length = 319

Iteration: 1
 Score = 43.1 bits (100), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 36/104 (34%), Positives = 47/104 (45%), Gaps = 15/104 (14%)
Query: 663 ECEVRKRIRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKL 722
           E E R + R       I S+++Y H      I+H DLK  N+LLD DM   I+DFG    
Sbjct: 105 EKEARAKFRQ------IVSAVQYCH---QKFIVHRDLKAENLLLDADMNIKIADFG---- 151
Query: 723 LSGEDQLSKQTQTL-ATIGYMAPE-YGTKGRVSTRGDVCSFGII 764
            S E     +  T   +  Y APE +  K       DV S G+I
Sbjct: 152 FSNEFTFGNKLDTFCGSPPYAAPELFQGKKYDGPEVDVWSLGVI 195

>pdb|2ZMC|A Chain A, Crystal Structure Of Human Mitotic Checkpoint Kinase Mps1 Catalytic Domain Apo Form Length = 390

Iteration: 1
 Score = 43.1 bits (100), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 683 LEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYM 742
           LE +H  H   I+H DLKP+N L+ + M+  I DFGIA  +  +     +   + T+ YM
Sbjct: 165 LEAVHTIHQHGIVHSDLKPANFLIVDGMLKLI-DFGIANQMQPDTTSVVKDSQVGTVNYM 223
Query: 743 APE 745
            PE
Sbjct: 224 PPE 226

>pdb|1ZMU|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1: Wild Type Length = 327

Iteration: 1
 Score = 43.1 bits (100), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 36/104 (34%), Positives = 47/104 (45%), Gaps = 15/104 (14%)
Query: 663 ECEVRKRIRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKL 722
           E E R + R       I S+++Y H      I+H DLK  N+LLD DM   I+DFG    
Sbjct: 112 EKEARAKFRQ------IVSAVQYCH---QKFIVHRDLKAENLLLDADMNIKIADFG---- 158
Query: 723 LSGEDQLSKQTQTL-ATIGYMAPE-YGTKGRVSTRGDVCSFGII 764
            S E     +  T   +  Y APE +  K       DV S G+I
Sbjct: 159 FSNEFTFGNKLDTFCGSPPYAAPELFQGKKYDGPEVDVWSLGVI 202

>pdb|3VUD|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M1 In Map Kinase Jnk1 Length = 370

Iteration: 1
 Score = 43.1 bits (100), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 72/170 (42%), Gaps = 29/170 (17%)
Query: 610 NSPQAIRRFSYHELLRATDRFSENNLIGIGNGMEVAVKVFHQQYERALKSFEDECEVRKR 669
           N   A R +    L++  +     N+IG+ N       VF  Q  ++L+ F+D   +   
Sbjct: 63  NQTHAKRAYRELVLMKCVNH---KNIIGLLN-------VFTPQ--KSLEEFQD-VYIVME 109
Query: 670 IRHRNLVKIISSSLE-----YLHFG--------HSIPIIHCDLKPSNVLLDEDMVAHISD 716
           +   NL ++I   L+     YL +         HS  IIH DLKPSN+++  D    I D
Sbjct: 110 LMDANLCQVIQMELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILD 169
Query: 717 FGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISG 766
           FG+A+       +   T  + T  Y APE           D+ S G I G
Sbjct: 170 FGLARTAGTSFMM---TPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMG 216

>pdb|3HMN|A Chain A, Crystal Structure Of Human Mps1 Catalytic Domain In Complex With Atp Length = 342

Iteration: 1
 Score = 43.1 bits (100), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 36/108 (33%), Positives = 49/108 (45%), Gaps = 19/108 (17%)
Query: 683 LEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYM 742
           LE +H  H   I+H DLKP+N L+ + M+  I DFGIA  +  +     +   + T+ YM
Sbjct: 165 LEAVHTIHQHGIVHSDLKPANFLIVDGMLKLI-DFGIANQMQPDTTSVVKDSQVGTVNYM 223
Query: 743 APEYGTKGRVSTR------------GDVCSFGIISGGKETRSMTVGET 778
            PE   K   S+R             DV S G I        MT G+T
Sbjct: 224 PPE-AIKDMSSSRENGKSKSKISPKSDVWSLGCI-----LYYMTYGKT 265

>pdb|1ZMV|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1: K82r Mutant Length = 327

Iteration: 1
 Score = 43.1 bits (100), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 36/104 (34%), Positives = 47/104 (45%), Gaps = 15/104 (14%)
Query: 663 ECEVRKRIRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKL 722
           E E R + R       I S+++Y H      I+H DLK  N+LLD DM   I+DFG    
Sbjct: 112 EKEARAKFRQ------IVSAVQYCH---QKFIVHRDLKAENLLLDADMNIKIADFG---- 158
Query: 723 LSGEDQLSKQTQTL-ATIGYMAPE-YGTKGRVSTRGDVCSFGII 764
            S E     +  T   +  Y APE +  K       DV S G+I
Sbjct: 159 FSNEFTFGNKLDTFCGSPPYAAPELFQGKKYDGPEVDVWSLGVI 202

>pdb|3FV8|A Chain A, Jnk3 Bound To Piperazine Amide Inhibitor, Sr2774 Length = 355

Iteration: 1
 Score = 43.1 bits (100), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 38/126 (30%), Positives = 56/126 (44%), Gaps = 17/126 (13%)
Query: 654 ERALKSFEDECEVRKRIRHRNLVKIISSSLE-----YLHFG--------HSIPIIHCDLK 700
           ++ L+ F+D   V + +   NL ++I   L+     YL +         HS  IIH DLK
Sbjct: 95  QKTLEEFQDVYLVME-LMDANLXQVIQMELDHERMSYLLYQMLCGIKHLHSAGIIHRDLK 153
Query: 701 PSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCS 760
           PSN+++  D    I DFG+A+       +   T  + T  Y APE           D+ S
Sbjct: 154 PSNIVVKSDXTLKILDFGLARTAGTSFMM---TPYVVTRYYRAPEVILGMGYKENVDIWS 210
Query: 761 FGIISG 766
            G I G
Sbjct: 211 VGCIMG 216

>pdb|3FE3|A Chain A, Crystal Structure Of The Kinase Mark3PAR-1: T211a-S215a Double Mutant Length = 328

Iteration: 1
 Score = 43.1 bits (100), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 48/160 (30%), Positives = 66/160 (41%), Gaps = 24/160 (15%)
Query: 663 ECEVRKRIRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKL 722
           E E R + R       I S+++Y H      I+H DLK  N+LLD DM   I+DFG +  
Sbjct: 113 EKEARSKFRQ------IVSAVQYCH---QKRIVHRDLKAENLLLDADMNIKIADFGFSNE 163
Query: 723 LSGEDQLSKQTQTLATIG---YMAPE-YGTKGRVSTRGDVCSFGII-----SGGKETRSM 773
            +   +L       A  G   Y APE +  K       DV S G+I     SG       
Sbjct: 164 FTVGGKLD------AFCGAPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDGQ 217
Query: 774 TVGETCTPVRESKYEVHPATTTIMEHPLPRVGEVMDVDRG 813
            + E    V   KY +    +T  E+ L R   +  + RG
Sbjct: 218 NLKELRERVLRGKYRIPFYMSTDCENLLKRFLVLNPIKRG 257

>pdb|3SDJ|A Chain A, Structure Of Rnase-Inactive Point Mutant Of Oligomeric KinaseRNASE Ire1 Length = 448

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 40/118 (33%), Positives = 59/118 (50%), Gaps = 26/118 (22%)
Query: 674 NLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLD-------------EDMVAHISDFGIA 720
           +L++ I+S + +LH   S+ IIH DLKP N+L+              E++   ISDFG+ 
Sbjct: 137 SLLRQIASGVAHLH---SLKIIHRDLKPQNILVSTSSRFTADQQTGAENLRILISDFGLC 193
Query: 721 KLL-SGEDQLSKQTQTLA-TIGYMAPEY---GTKGRVSTRGDVCSFG-----IISGGK 768
           K L SG+          + T G+ APE     TK R++   D+ S G     I+S GK
Sbjct: 194 KKLDSGQXXFRXNLNNPSGTSGWRAPELLEESTKRRLTRSIDIFSMGCVFYYILSKGK 251

>pdb|2Q0N|A Chain A, Structure Of Human P21 Activating Kinase 4 (Pak4) In Complex With A Consensus Peptide Length = 301

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 2/96 (2%)
Query: 669 RIRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQ 728
           R+    +  +  + L+ L   H+  +IH D+K  ++LL  D    +SDFG    +S E  
Sbjct: 121 RMNEEQIAAVCLAVLQALSVLHAQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKE-- 178
Query: 729 LSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
           + ++   + T  +MAPE  ++       D+ S GI+
Sbjct: 179 VPRRKXLVGTPYWMAPELISRLPYGPEVDIWSLGIM 214

>pdb|3FI2|A Chain A, Crystal Structure Of Jnk3 With Amino-Pyrazole Inhibitor, Sr- 3451 Length = 353

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 38/126 (30%), Positives = 56/126 (44%), Gaps = 17/126 (13%)
Query: 654 ERALKSFEDECEVRKRIRHRNLVKIISSSLE-----YLHFG--------HSIPIIHCDLK 700
           ++ L+ F+D   V + +   NL ++I   L+     YL +         HS  IIH DLK
Sbjct: 95  QKTLEEFQDVYLVME-LMDANLCQVIQMELDHERMSYLLYQMLCGIKHLHSAGIIHRDLK 153
Query: 701 PSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCS 760
           PSN+++  D    I DFG+A+       +   T  + T  Y APE           D+ S
Sbjct: 154 PSNIVVKSDXTLKILDFGLARTAGTSFMM---TPYVVTRYYRAPEVILGMGYKENVDIWS 210
Query: 761 FGIISG 766
            G I G
Sbjct: 211 VGCIMG 216

>pdb|3MI9|A Chain A, Crystal Structure Of Hiv-1 Tat Complexed With Human P-Tefb Length = 351

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 677 KIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKL--LSGEDQLSKQTQ 734
           +++   L  L++ H   I+H D+K +NVL+  D V  ++DFG+A+   L+   Q ++   
Sbjct: 128 RVMQMLLNGLYYIHRNKILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNSQPNRYXN 187
Query: 735 TLATIGYMAPE 745
            + T+ Y  PE
Sbjct: 188 RVVTLWYRPPE 198

>pdb|2CDZ|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4 In Complex With Cgp74514a Length = 303

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 2/96 (2%)
Query: 669 RIRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQ 728
           R+    +  +  + L+ L   H+  +IH D+K  ++LL  D    +SDFG    +S E  
Sbjct: 123 RMNEEQIAAVCLAVLQALSVLHAQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKE-- 180
Query: 729 LSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
           + ++   + T  +MAPE  ++       D+ S GI+
Sbjct: 181 VPRRKXLVGTPYWMAPELISRLPYGPEVDIWSLGIM 216

>pdb|2WNT|A Chain A, Crystal Structure Of The Human Ribosomal Protein S6 Kinase Length = 330

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 47/94 (50%), Gaps = 9/94 (9%)
Query: 675 LVKIISSSLEYLHFGHSIPIIHCDLKPSNVL-LDED---MVAHISDFGIAKLLSGEDQLS 730
           ++  I  ++EYLH   S  ++H DLKPSN+L +DE        I DFG AK L  E+ L 
Sbjct: 126 VLHTIGKTVEYLH---SQGVVHRDLKPSNILYVDESGNPECLRICDFGFAKQLRAENGL- 181
Query: 731 KQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
                  T  ++APE   +       D+ S GI+
Sbjct: 182 -LMTPCYTANFVAPEVLKRQGYDEGCDIWSLGIL 214

>pdb|2OZO|A Chain A, Autoinhibited Intact Human Zap-70 Length = 613

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 4/91 (4%)
Query: 674 NLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQ-LSKQ 732
            L+  +S  ++YL   +    +H +L   NVLL     A ISDFG++K L  +D   + +
Sbjct: 440 ELLHQVSMGMKYLEEKN---FVHRNLAARNVLLVNRHYAKISDFGLSKALGADDSYYTAR 496
Query: 733 TQTLATIGYMAPEYGTKGRVSTRGDVCSFGI 763
           +     + + APE     + S+R DV S+G+
Sbjct: 497 SAGKWPLKWYAPECINFRKFSSRSDVWSYGV 527

>pdb|2BVA|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4 Length = 292

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 2/96 (2%)
Query: 669 RIRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQ 728
           R+    +  +  + L+ L   H+  +IH D+K  ++LL  D    +SDFG    +S E  
Sbjct: 112 RMNEEQIAAVCLAVLQALSVLHAQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKE-- 169
Query: 729 LSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
           + ++   + T  +MAPE  ++       D+ S GI+
Sbjct: 170 VPRRKXLVGTPYWMAPELISRLPYGPEVDIWSLGIM 205

>pdb|4EXU|A Chain A, Mapk13, Inactive Form Length = 371

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
Query: 678 IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLA 737
           ++   L+ L + HS  ++H DLKP N+ ++ED    I DFG+A+    E      T  + 
Sbjct: 149 LVYQMLKGLKYIHSAGVVHRDLKPGNLAVNEDCELKILDFGLARHADAE-----MTGYVV 203
Query: 738 TIGYMAPE 745
           T  Y APE
Sbjct: 204 TRWYRAPE 211

>pdb|4H1J|A Chain A, Crystal Structure Of Pyk2 With The Pyrazole 13a Length = 293

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 31/110 (28%), Positives = 54/110 (49%), Gaps = 12/110 (10%)
Query: 671 RHRNLVKIISSSLEYLH------FGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLS 724
           R++N +K+++  L  L       +  SI  +H D+   N+L+       + DFG+++ + 
Sbjct: 117 RNKNSLKVLTLVLYSLQICKAMAYLESINCVHRDIAVRNILVASPECVKLGDFGLSRYIE 176
Query: 725 GEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGD-----VCSFGIISGGKE 769
            ED   K + T   I +M+PE     R +T  D     VC + I+S GK+
Sbjct: 177 DEDYY-KASVTRLPIKWMSPESINFRRFTTASDVWMFAVCMWEILSFGKQ 225

>pdb|3FZO|A Chain A, Crystal Structure Of Pyk2-Apo, Proline-Rich Tyrosine Kinase Length = 277

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 31/110 (28%), Positives = 54/110 (49%), Gaps = 12/110 (10%)
Query: 671 RHRNLVKIISSSLEYLH------FGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLS 724
           R++N +K+++  L  L       +  SI  +H D+   N+L+       + DFG+++ + 
Sbjct: 101 RNKNSLKVLTLVLYSLQICKAMAYLESINCVHRDIAVRNILVASPECVKLGDFGLSRYIE 160
Query: 725 GEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGD-----VCSFGIISGGKE 769
            ED   K + T   I +M+PE     R +T  D     VC + I+S GK+
Sbjct: 161 DEDYY-KASVTRLPIKWMSPESINFRRFTTASDVWMFAVCMWEILSFGKQ 209

>pdb|4BCF|A Chain A, Structure Of Cdk9 In Complex With Cyclin T And A 2-amino-4- Heteroaryl-pyrimidine Inhibitor Length = 331

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 677 KIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKL--LSGEDQLSKQTQ 734
           +++   L  L++ H   I+H D+K +NVL+  D V  ++DFG+A+   L+   Q ++   
Sbjct: 129 RVMQMLLNGLYYIHRNKILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNSQPNRYXN 188
Query: 735 TLATIGYMAPE 745
            + T+ Y  PE
Sbjct: 189 RVVTLWYRPPE 199

>pdb|4FIE|A Chain A, Full-Length Human Pak4 Length = 423

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 2/96 (2%)
Query: 669 RIRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQ 728
           R+    +  +  + L+ L   H+  +IH D+K  ++LL  D    +SDFG    +S E  
Sbjct: 243 RMNEEQIAAVCLAVLQALSVLHAQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKE-- 300
Query: 729 LSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
           + ++   + T  +MAPE  ++       D+ S GI+
Sbjct: 301 VPRRKXLVGTPYWMAPELISRLPYGPEVDIWSLGIM 336

>pdb|3BLH|A Chain A, Crystal Structure Of Human Cdk9CYCLINT1 Length = 331

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 677 KIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKL--LSGEDQLSKQTQ 734
           +++   L  L++ H   I+H D+K +NVL+  D V  ++DFG+A+   L+   Q ++   
Sbjct: 129 RVMQMLLNGLYYIHRNKILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNSQPNRYXN 188
Query: 735 TLATIGYMAPE 745
            + T+ Y  PE
Sbjct: 189 RVVTLWYRPPE 199

>pdb|1ZMW|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1: T208aS212A INACTIVE DOUBLE MUTANT Length = 327

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 36/106 (33%), Positives = 49/106 (46%), Gaps = 19/106 (17%)
Query: 663 ECEVRKRIRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKL 722
           E E R + R       I S+++Y H      I+H DLK  N+LLD DM   I+DFG +  
Sbjct: 112 EKEARAKFRQ------IVSAVQYCH---QKFIVHRDLKAENLLLDADMNIKIADFGFSNE 162
Query: 723 LSGEDQLSKQTQTLATIG---YMAPE-YGTKGRVSTRGDVCSFGII 764
            +  ++L       A  G   Y APE +  K       DV S G+I
Sbjct: 163 FTFGNKLD------AFCGAPPYAAPELFQGKKYDGPEVDVWSLGVI 202

>pdb|3FBV|A Chain A, Crystal Structure Of The Oligomer Formed By The Kinase-Ribonuclease Domain Of Ire1 Length = 448

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 40/118 (33%), Positives = 59/118 (50%), Gaps = 26/118 (22%)
Query: 674 NLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLD-------------EDMVAHISDFGIA 720
           +L++ I+S + +LH   S+ IIH DLKP N+L+              E++   ISDFG+ 
Sbjct: 137 SLLRQIASGVAHLH---SLKIIHRDLKPQNILVSTSSRFTADQQTGAENLRILISDFGLC 193
Query: 721 KLL-SGEDQLSKQTQTLA-TIGYMAPEY---GTKGRVSTRGDVCSFG-----IISGGK 768
           K L SG+          + T G+ APE     TK R++   D+ S G     I+S GK
Sbjct: 194 KKLDSGQXXFRXNLNNPSGTSGWRAPELLEESTKRRLTRSIDIFSMGCVFYYILSKGK 251

>pdb|3COI|A Chain A, Crystal Structure Of P38delta Kinase Length = 353

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
Query: 678 IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLA 737
           ++   L+ L + HS  ++H DLKP N+ ++ED    I DFG+A+    E      T  + 
Sbjct: 131 LVYQMLKGLKYIHSAGVVHRDLKPGNLAVNEDCELKILDFGLARHADAE-----MTGYVV 185
Query: 738 TIGYMAPE 745
           T  Y APE
Sbjct: 186 TRWYRAPE 193

>pdb|4FIF|A Chain A, Catalytic Domain Of Human Pak4 With Rpkplvdp Peptide Length = 346

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 2/96 (2%)
Query: 669 RIRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQ 728
           R+    +  +  + L+ L   H+  +IH D+K  ++LL  D    +SDFG    +S E  
Sbjct: 166 RMNEEQIAAVCLAVLQALSVLHAQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKE-- 223
Query: 729 LSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
           + ++   + T  +MAPE  ++       D+ S GI+
Sbjct: 224 VPRRKXLVGTPYWMAPELISRLPYGPEVDIWSLGIM 259

>pdb|3MH1|A Chain A, Mutagenesis Of P38 Map Kinase Establishes Key Roles Of Phe169 In Function And Structural Dynamics And Reveals A Novel Dfg-Out State Length = 360

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 28/68 (41%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
Query: 678 IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLA 737
           +I   L  L + HS  IIH DLKPSN+ ++ED    I D G+A+    E      T  +A
Sbjct: 130 LIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDGGLARHTDDE-----MTGYVA 184
Query: 738 TIGYMAPE 745
           T  Y APE
Sbjct: 185 TRWYRAPE 192

>pdb|2WQM|A Chain A, Structure Of Apo Human Nek7 Length = 310

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 30/113 (26%), Positives = 52/113 (46%), Gaps = 11/113 (9%)
Query: 655 RALKSFEDECEVRKRIRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHI 714
           R +K F+ +   ++ I  R + K        L   HS  ++H D+KP+NV +    V  +
Sbjct: 121 RMIKHFKKQ---KRLIPERTVWKYFVQLCSALEHMHSRRVMHRDIKPANVFITATGVVKL 177
Query: 715 SDFGIAKLLSGEDQLSKQTQTLATIG---YMAPEYGTKGRVSTRGDVCSFGII 764
            D G+ +  S     SK T   + +G   YM+PE   +   + + D+ S G +
Sbjct: 178 GDLGLGRFFS-----SKTTAAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCL 225

>pdb|3NPC|A Chain A, Crystal Structure Of Jnk2 Complexed With Birb796 Length = 364

Iteration: 1
 Score = 42.7 bits (99), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 38/126 (30%), Positives = 57/126 (45%), Gaps = 17/126 (13%)
Query: 654 ERALKSFEDECEVRKRIRHRNLVKIISSSLE-----YLHFG--------HSIPIIHCDLK 700
           ++ L+ F+D   V + +   NL ++I   L+     YL +         HS  IIH DLK
Sbjct: 95  QKTLEEFQDVYLVME-LMDANLCQVIHMELDHERMSYLLYQMLCGIKHLHSAGIIHRDLK 153
Query: 701 PSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCS 760
           PSN+++  D    I DFG+A+       +   T  + T  Y APE       +   D+ S
Sbjct: 154 PSNIVVKSDCTLKILDFGLARTACTNFMM---TPYVVTRYYRAPEVILGMGYAANVDIWS 210
Query: 761 FGIISG 766
            G I G
Sbjct: 211 VGCIMG 216

>pdb|2X4Z|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4 In Complex With Pf-03758309 Length = 296

Iteration: 1
 Score = 42.7 bits (99), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 2/96 (2%)
Query: 669 RIRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQ 728
           R+    +  +  + L+ L   H+  +IH D+K  ++LL  D    +SDFG    +S E  
Sbjct: 116 RMNEEQIAAVCLAVLQALSVLHAQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKE-- 173
Query: 729 LSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
           + ++   + T  +MAPE  ++       D+ S GI+
Sbjct: 174 VPRRKXLVGTPYWMAPELISRLPYGPEVDIWSLGIM 209

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	823
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-121
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-115
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-101
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-27
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-75
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-62
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-33
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-69
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-66
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-62
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-61
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-59
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-40
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-16
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-64
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	7e-58
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-64
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-63
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-57
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-49
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-30
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-24
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-62
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-55
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-51
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-35
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-21
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-58
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-57
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-51
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-28
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-19
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-15
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-53
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-49
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-46
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-46
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-45
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-26
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-22
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-44
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-43
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-14
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-41
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-39
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-31
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-07
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	1e-40
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-39
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-39
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-35
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-29
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-21
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-20
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	9e-20
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-19
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-39
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-33
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-29
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-21
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-18
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-18
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	6e-39
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-38
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-37
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-26
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-35
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-33
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-33
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-33
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	8e-33
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-21
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-10
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-35
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	9e-27
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-24
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-15
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-35
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	8e-34
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	8e-32
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-30
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-11
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-11
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-35
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-29
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-11
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-34
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-29
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	8e-34
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	8e-18
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-14
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-13
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	2e-33
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-30
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-27
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-22
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	9e-21
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-16
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-30
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-29
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	9e-29
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-25
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-12
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-29
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-25
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-25
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-21
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-21
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-20
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-18
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-28
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-22
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-20
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-17
3soc_A	322	Activin receptor type-2A; structural genomics cons	4e-28
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	8e-28
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	8e-20
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-15
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	9e-28
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	3e-26
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	3e-26
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-25
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-23
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-17
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	6e-13
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-12
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	7e-25
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	1e-24
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-24
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-19
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-18
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	9e-18
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-11
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	5e-24
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	1e-23
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	5e-23
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	8e-23
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-22
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-21
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	6e-19
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-16
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	5e-13
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-22
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-18
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-17
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	8e-12
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-11
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-10
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-08
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-22
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-22
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	9e-17
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-16
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-08
3q4u_A	301	Activin receptor type-1; structural genomics conso	6e-22
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	1e-21
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-21
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-21
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-15
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-08
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-04
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-21
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-20
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-20
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-17
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-11
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-20
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	5e-18
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-16
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-08
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-08
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	2e-20
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	2e-20
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	4e-20
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	5e-20
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	5e-19
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-15
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-13
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-11
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-19
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-17
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-14
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-06
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	9e-19
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	1e-18
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	3e-17
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-17
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-14
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-14
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	7e-14
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-05
3ork_A	311	Serine/threonine protein kinase; structural genomi	6e-17
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	7e-16
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-15
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-14
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	9e-11
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-08
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	8e-16
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-12
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	7e-09
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-08
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-06
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	2e-15
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-15
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	5e-15
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-14
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	7e-14
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-07
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-05
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-15
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	8e-13
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	8e-12
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-10
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	5e-09
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-07
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-06
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	4e-15
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-15
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	7e-09
4fr4_A	384	YANK1, serine/threonine-protein kinase 32A; struct	5e-15
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	7e-15
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	9e-15
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-14
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-11
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-14
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-13
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-12
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-12
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	7e-12
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-09
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	2e-14
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	3e-14
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	4e-14
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	4e-14
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	5e-14
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	5e-14
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	7e-14
2a19_B	284	Interferon-induced, double-stranded RNA-activated	8e-14
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	8e-14
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	9e-14
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	9e-14
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	1e-13
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	1e-13
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	2e-13
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	2e-13
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	2e-13
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	2e-13
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-13
4apc_A	350	Serine/threonine-protein kinase NEK1; transferase;	3e-13
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-13
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-12
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-12
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-10
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-09
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-04
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	3e-13
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	4e-13
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	4e-13
1uu3_A	310	HPDK1, 3-phosphoinositide dependent protein kinase	5e-13
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	6e-13
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-12
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-07
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	6e-13
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	5e-12
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-06
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-05
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	6e-13
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	7e-13
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	8e-13
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	8e-13
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	9e-13
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	9e-13
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	9e-13
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	1e-12
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	1e-12
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-12
3pls_A	298	Macrophage-stimulating protein receptor; protein k	2e-12
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	2e-12
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	2e-12
3fme_A	290	Dual specificity mitogen-activated protein kinase;	2e-12
3an0_A	340	Dual specificity mitogen-activated protein kinase;	2e-12
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	2e-12
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	2e-12
3aln_A	327	Dual specificity mitogen-activated protein kinase;	3e-12
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	3e-12
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	3e-12
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	3e-12
3pvu_A	695	Beta-adrenergic receptor kinase 1; transferase, se	3e-12
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	3e-12
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	4e-12
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	4e-12
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	5e-12
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	5e-12
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	6e-12
2dyl_A	318	Dual specificity mitogen-activated protein kinase	6e-12
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	6e-12
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	6e-12
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	7e-12
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	7e-12
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	8e-12
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	8e-12
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	9e-12
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	1e-11
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	1e-11
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	1e-11
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	1e-11
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	1e-11
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	1e-11
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	1e-11
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	1e-11
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	2e-11
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	2e-11
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	2e-11
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	2e-11
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	2e-11
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	2e-11
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	2e-11
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	3e-11
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	3e-11
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	3e-11
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-11
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-10
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	7e-09
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-05
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	3e-11
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	3e-11
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	4e-11
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	4e-11
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	4e-11
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	4e-11
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	5e-11
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	5e-11
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	5e-11
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	5e-11
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	5e-11
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	5e-11
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-09
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	5e-08
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	5e-11
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	5e-11
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	6e-11
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	6e-11
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	6e-11
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	6e-11
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	7e-11
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	7e-11
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	8e-11
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	9e-11
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	1e-10
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	1e-10
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	1e-10
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	1e-10
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	1e-10
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	2e-10
2xrw_A	371	Mitogen-activated protein kinase 8; transcription,	2e-10
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	2e-10
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	2e-10
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	2e-10
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	2e-10
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	3e-10
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	3e-10
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	3e-10
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	4e-10
1fot_A	318	TPK1 delta, CAMP-dependent protein kinase type 1;	4e-10
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	4e-10
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	4e-10
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	5e-10
3zzw_A	289	Tyrosine-protein kinase transmembrane receptor RO;	6e-10
3g51_A	325	Ribosomal protein S6 kinase alpha-3; N-terminal ki	7e-10
1vzo_A	355	Ribosomal protein S6 kinase alpha 5; protein kinas	7e-10
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	7e-10
3v5q_A	297	NT-3 growth factor receptor; kinase domain, kinase	7e-10
4aoj_A	329	High affinity nerve growth factor receptor; transf	8e-10
3a62_A	327	Ribosomal protein S6 kinase beta-1; kinase domain,	1e-09
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	1e-09
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	1e-09
3bhy_A	283	Death-associated protein kinase 3; death associate	2e-09
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	2e-09
1o6l_A	337	RAC-beta serine/threonine protein kinase; protein	2e-09
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	2e-09
1rdq_E	350	PKA C-alpha, CAMP-dependent protein kinase, alpha-	2e-09
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	2e-09
2r5t_A	373	Serine/threonine-protein kinase SGK1; AGC protein	2e-09
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	2e-09
3a8x_A	345	Protein kinase C IOTA type; transferase; HET: TPO;	2e-09
3v8s_A	410	RHO-associated protein kinase 1; dimerization, myo	3e-09
4dc2_A	396	Protein kinase C IOTA type; kinase, substrate, cel	3e-09
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	3e-09
3qyz_A	364	Mitogen-activated protein kinase 1; transferase, s	3e-09
2i6l_A	320	Mitogen-activated protein kinase 6; MAPK6, ERK3, e	3e-09
3pg1_A	362	Mitogen-activated protein kinase, putative (MAP K	4e-09
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	4e-09
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	4e-09
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	4e-09
2i0e_A	353	Protein kinase C-beta II; serine/threonine protein	5e-09
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	5e-09
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	6e-09
3txo_A	353	PKC-L, NPKC-ETA, protein kinase C ETA type; phosph	6e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-07
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	7e-09
3ttj_A	464	Mitogen-activated protein kinase 10; JNK3, protein	8e-09
1xjd_A	345	Protein kinase C, theta type; PKC-theta, ATP, AMP,	9e-09
2vd5_A	412	DMPK protein; serine/threonine-protein kinase, kin	1e-08
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-08
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	9e-08
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	5e-07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-05
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	1e-08
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	1e-08
2fst_X	367	Mitogen-activated protein kinase 14; active mutant	1e-08
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	1e-08
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	1e-08
2b9h_A	353	MAP kinase FUS3, mitogen-activated protein kinase	2e-08
1cm8_A	367	Phosphorylated MAP kinase P38-gamma; phosphorylati	2e-08
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	3e-08
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	3e-08
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	3e-08
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-08
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-07
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	9e-05
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	3e-08
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	4e-08
3coi_A	353	Mitogen-activated protein kinase 13; P38D, P38delt	5e-08
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	6e-08
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	6e-08
3n9x_A	432	Phosphotransferase; malaria kinase, structural gen	7e-08
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	9e-08
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	7e-04
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	1e-07
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	1e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	8e-05
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	2e-07
3rp9_A	458	Mitogen-activated protein kinase; structural genom	2e-07
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	3e-07
3oz6_A	388	Mitogen-activated protein kinase 1, serine/threon	3e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	9e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-05
3m2w_A	299	MAP kinase-activated protein kinase 2; small molec	4e-07
3eb0_A	383	Putative uncharacterized protein; kinase cryptospo	5e-07
3uqc_A	286	Probable conserved transmembrane protein; structur	5e-07
3e3p_A	360	Protein kinase, putative glycogen synthase kinase;	8e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-04
3niz_A	311	Rhodanese family protein; structural genomics, str	2e-06
3o0g_A	292	Cell division protein kinase 5; kinase activator c	2e-06
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	2e-06
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	4e-06
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	4e-06
3m19_A	251	Variable lymphocyte receptor A diversity region; a	4e-06
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-05
3m19_A	251	Variable lymphocyte receptor A diversity region; a	4e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	7e-04
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	4e-06
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	4e-06
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	4e-06
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	4e-04
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	4e-04
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	5e-06
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	6e-06
3mtl_A	324	Cell division protein kinase 16; pctaire1, indirub	7e-06
1blx_A	326	Cyclin-dependent kinase 6; inhibitor protein, cycl	7e-06
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	9e-06
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	1e-05
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	1e-05
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-04
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	1e-05
3e6j_A	229	Variable lymphocyte receptor diversity region; var	1e-05
3e6j_A	229	Variable lymphocyte receptor diversity region; var	3e-05
3e6j_A	229	Variable lymphocyte receptor diversity region; var	7e-05
1ua2_A	346	CAK, cell division protein kinase 7; cell cycle, p	1e-05
1q8y_A	373	SR protein kinase; transferase; HET: ADP ADE; 2.05	2e-05
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	2e-05
3nsz_A	330	CK II alpha, casein kinase II subunit alpha; inhib	2e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-04
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	3e-05
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	6e-05
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	7e-05
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	1e-04
2v62_A	345	Serine/threonine-protein kinase VRK2; transferase,	1e-04
3kvw_A	429	DYRK2, dual specificity tyrosine-phosphorylation-r	1e-04
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	1e-04
3op5_A	364	Serine/threonine-protein kinase VRK1; adenosine tr	2e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	2e-04
2jii_A	352	Serine/threonine-protein kinase VRK3 molecule: VA	2e-04
2vx3_A	382	Dual specificity tyrosine-phosphorylation- regula	4e-04
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	4e-04
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	5e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	5e-04
3llt_A	360	Serine/threonine kinase-1, pflammer; lammer kinase	7e-04
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	9e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  381 bits (982), Expect = e-121
 Identities = 143/570 (25%), Positives = 250/570 (43%), Gaps = 84/570 (14%)

Query: 12  QALLALKAHISYDHTNLFARNWTSSTSVCIWIGITCDVNSHRVIG--------------- 56
             L++ K  +  D   L   +W+S+ + C + G+TC     +V                 
Sbjct: 15  HQLISFKDVLP-DKNLL--PDWSSNKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAV 69

Query: 57  -----------------------------------LNISSFNLQGTITP--QLGNLSSLQ 79
                                              L++S  +L G +T    LG+ S L+
Sbjct: 70  SSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLK 129

Query: 80  TLDLSHNKLSGNIPSSIF-NMHTLKLLDFSDNQLFGSLSSFIF---NMSSMTTIDLSINR 135
            L++S N L      S    +++L++LD S N + G+             +  + +S N+
Sbjct: 130 FLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNK 189

Query: 136 LSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEIGNLTKLKEI-ISTITNSTVC 194
           +SG++          +S+C  LE L++  NN S  IP  +G+ + L+ + IS   N    
Sbjct: 190 ISGDVD---------VSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISG--NKLSG 237

Query: 195 EIPREIGNLPYLARLALATNNLVGVVPVTIFNMSALKEISLLNNSLSGSLPSRIDLSLPN 254
           +  R I     L  L +++N  VG +P     + +L+ +SL  N  +G +P  +  +   
Sbjct: 238 DFSRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDT 295

Query: 255 VETLNLGINSFSGTIPSSITNSSKLSDLELGENLFSGFIP-NTIGNLRNLEFGNIADNYL 313
           +  L+L  N F G +P    + S L  L L  N FSG +P +T+  +R L+  +++ N  
Sbjct: 296 LTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEF 355

Query: 314 TSSTPELSFLSSLTNCK-KLKVLIVTGNPLDGILPKSIGNFSL-SLETILMANCSISGNI 371
           +   P      SLTN    L  L ++ N   G +  ++      +L+ + + N   +G I
Sbjct: 356 SGELP-----ESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKI 410

Query: 372 PQVVGNLSNLLVLELGGNNLTGPIPVTFSQLQTLQAFDLTRNKLAGPITDELCHLARLHS 431
           P  + N S L+ L L  N L+G IP +   L  L+   L  N L G I  EL ++  L +
Sbjct: 411 PPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLET 470

Query: 432 LVLQGNKFSGSIPSCLGNLTSVRVLYLGLNIFTSVLSSTIWNLKDILFIDVSSNFLDGPL 491
           L+L  N  +G IPS L N T++  + L  N  T  +   I  L+++  + +S+N   G +
Sbjct: 471 LILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNI 530

Query: 492 SLDIGNLKVVIGLDFSRNNLSGDIPITIGE 521
             ++G+ + +I LD + N  +G IP  + +
Sbjct: 531 PAELGDCRSLIWLDLNTNLFNGTIPAAMFK 560

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  366 bits (941), Expect = e-115
 Identities = 137/517 (26%), Positives = 227/517 (43%), Gaps = 34/517 (6%)

Query: 57  LNISSFNLQGTITPQL-GNLSSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQLFGS 115
           L+++     G I   L G   +L  LDLS N   G +P    +   L+ L  S N   G 
Sbjct: 274 LSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGE 333

Query: 116 L-SSFIFNMSSMTTIDLSINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKE 174
           L    +  M  +  +DLS N  SGELP ++  + +       L  L+L  NN SG I   
Sbjct: 334 LPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSA------SLLTLDLSSNNFSGPILPN 387

Query: 175 IGNLTKLK-EIISTITNSTVCEIPREIGNLPYLARLALATNNLVGVVPVTIFNMSALKEI 233
           +    K   + +    N    +IP  + N   L  L L+ N L G +P ++ ++S L+++
Sbjct: 388 LCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDL 447

Query: 234 SLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSITNSSKLSDLELGENLFSGFI 293
            L  N L G +P  + + +  +ETL L  N  +G IPS ++N + L+ + L  N  +G I
Sbjct: 448 KLWLNMLEGEIPQEL-MYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEI 506

Query: 294 PNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGILPKSIGNF 353
           P  IG L NL    +++N  + + P     + L +C+ L  L +  N  +G +P ++   
Sbjct: 507 PKWIGRLENLAILKLSNNSFSGNIP-----AELGDCRSLIWLDLNTNLFNGTIPAAMFKQ 561

Query: 354 SLSLETILMANCSISGNIPQVVGNLSNLLVLELGGN--NLTGPIPVTFSQLQTLQAFDLT 411
           S       +A   I+G     + N          GN     G      ++L T    ++T
Sbjct: 562 SG-----KIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNIT 616

Query: 412 RNKLAGPITDELCHLARLHSLVLQGNKFSGSIPSCLGNLTSVRVLYLGLNIFTSVLSSTI 471
                G  +    +   +  L +  N  SG IP  +G++  + +L LG N  +  +   +
Sbjct: 617 SRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEV 676

Query: 472 WNLKDILFIDVSSNFLDGPLSLDIGNLKVVIGLDFSRNNLSGDIPITIGEGEIPRGGPFA 531
            +L+ +  +D+SSN LDG +   +  L ++  +D S NNLS         G IP  G F 
Sbjct: 677 GDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLS---------GPIPEMGQFE 727

Query: 532 NLTAKSFMGNELLCGLPDLQVSPCKPNKPNTHKKSRK 568
                 F+ N  LCG P   +  C P+  + +   ++
Sbjct: 728 TFPPAKFLNNPGLCGYP---LPRCDPSNADGYAHHQR 761

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  329 bits (845), Expect = e-101
 Identities = 119/481 (24%), Positives = 204/481 (42%), Gaps = 69/481 (14%)

Query: 41  IWIGITCDVNSHRVIGLNISSFNLQGTITPQLGNLSSLQTLDLSHNKLSGNIPSSIFNMH 100
             +G         +  L IS   + G +   +    +L+ LD+S N  S  IP  + +  
Sbjct: 167 NVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF-LGDCS 223

Query: 101 TLKLLDFSDNQLFGSLSSFIFNMSSMTTIDLSINRLSGELPANICKIPSTLSKCKQLEEL 160
            L+ LD S N+L G  S  I   + +  +++S N+  G +P             K L+ L
Sbjct: 224 ALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP---------LPLKSLQYL 274

Query: 161 NLGFNNLSGAIPKEIGNLTKLKEIISTITNSTVCEIPREIGNLPYLARLALATNNLVGVV 220
           +L  N  +G IP  +                         G    L  L L+ N+  G V
Sbjct: 275 SLAENKFTGEIPDFLS------------------------GACDTLTGLDLSGNHFYGAV 310

Query: 221 PVTIFNMSALKEISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSITN-SSKL 279
           P    + S L+ ++L +N+ SG LP    L +  ++ L+L  N FSG +P S+TN S+ L
Sbjct: 311 PPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASL 370

Query: 280 SDLELGENLFSGFIPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTG 339
             L+L  N FSG I   +                                  L+ L +  
Sbjct: 371 LTLDLSSNNFSGPILPNLCQNPK---------------------------NTLQELYLQN 403

Query: 340 NPLDGILPKSIGNFSLSLETILMANCSISGNIPQVVGNLSNLLVLELGGNNLTGPIPVTF 399
           N   G +P ++ N S  L ++ ++   +SG IP  +G+LS L  L+L  N L G IP   
Sbjct: 404 NGFTGKIPPTLSNCS-ELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQEL 462

Query: 400 SQLQTLQAFDLTRNKLAGPITDELCHLARLHSLVLQGNKFSGSIPSCLGNLTSVRVLYLG 459
             ++TL+   L  N L G I   L +   L+ + L  N+ +G IP  +G L ++ +L L 
Sbjct: 463 MYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLS 522

Query: 460 LNIFTSVLSSTIWNLKDILFIDVSSNFLDGPLSLDIGNLKVVIGLDFSRNNLSGDIPITI 519
            N F+  + + + + + ++++D+++N  +G +   +           + N ++G   + I
Sbjct: 523 NNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQS----GKIAANFIAGKRYVYI 578

Query: 520 G 520
            
Sbjct: 579 K 579

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  117 bits (295), Expect = 3e-27
 Identities = 42/193 (21%), Positives = 68/193 (35%), Gaps = 33/193 (17%)

Query: 47  CDVNSHRVIGLNISSFNLQGTITPQLGNLSSLQTLDLSHNKLSGNIPSSIFNMHTLKLLD 106
            +    +      +    QG  + QL  LS+    +++     G+   +  N  ++  LD
Sbjct: 579 KNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLD 638

Query: 107 FSDNQLFGSLSSFIFNMSSMTTIDLSINRLSGELPANICKIPSTLSKCKQLEELNLGFNN 166
            S N L G +   I +M  +  ++L  N +SG        IP  +   + L  L+L  N 
Sbjct: 639 MSYNMLSGYIPKEIGSMPYLFILNLGHNDISGS-------IPDEVGDLRGLNILDLSSNK 691

Query: 167 LSGAIPKEIGNLTKLKEIISTITNSTVCEIPREIGNLPYLARLALATNNLVGVVPVTIFN 226
           L G IP+ +  LT                          L  + L+ NNL G +P     
Sbjct: 692 LDGRIPQAMSALT-------------------------MLTEIDLSNNNLSGPIPEMGQ- 725

Query: 227 MSALKEISLLNNS 239
                    LNN 
Sbjct: 726 FETFPPAKFLNNP 738

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  256 bits (656), Expect = 3e-75
 Identities = 78/558 (13%), Positives = 157/558 (28%), Gaps = 112/558 (20%)

Query: 32  NWTSSTSVCIW---IGITCDVNSHRVIGLNISSFNLQGTITPQLGNLS------------ 76
           NW  +  + +W    G++ + ++ RV GL++  F   G +   +G L+            
Sbjct: 59  NWNFNKELDMWGAQPGVSLN-SNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGE 117

Query: 77  ----------------SLQTLDLSHNKLSGNIPSSIFNMHTLKL--LDFSDNQLFGSLSS 118
                           S +                        L     + +    S+  
Sbjct: 118 KVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKK 177

Query: 119 FIFNMSSMTTIDLSINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEIGNL 178
                   T I    N ++         +   + +  +L +  +G +        E    
Sbjct: 178 SSRITLKDTQIGQLSNNITF--------VSKAVMRLTKLRQFYMGNSPFVAENICEAWEN 229

Query: 179 TKLKEIISTITNSTVCEIPREIGNLPYLARLALATNNLVGVVPVTIFNMSALKEISLLNN 238
              +                +  NL  L  + +     +  +P  +  +  ++ I++  N
Sbjct: 230 ENSE------YAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACN 283

Query: 239 SLSGSLPSRIDLS-------LPNVETLNLGINSF-SGTIPSSITNSSKLSDLELGENLFS 290
                   + D            ++ + +G N+  +  + +S+    KL  LE   N   
Sbjct: 284 RGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLE 343

Query: 291 GFIPNTIGNLRNLEFGNIADNYLTSSTPEL-SFLSSLT-------------------NCK 330
           G +P   G+   L   N+A N +T        F   +                    +  
Sbjct: 344 GKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVS 402

Query: 331 KLKVLIVTGNPLDGI-------LPKSIGNFSLSLETILMANCSISGNIPQVVGNLSNLLV 383
            +  +  + N +  +       L  +      ++ +I ++N  IS    ++    S L  
Sbjct: 403 VMSAIDFSYNEIGSVDGKNFDPLDPTPFKGI-NVSSINLSNNQISKFPKELFSTGSPLSS 461

Query: 384 LELGGNNLTG-------PIPVTFSQLQTLQAFDLTRNKLAG-PITDELCHLARLHSLVLQ 435
           + L GN LT             F     L + DL  NKL           L  L  + L 
Sbjct: 462 INLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLS 521

Query: 436 GNKFSGSIPSCLGNLTSVRVLYLGLNIFTSVLSSTIWNLKDILFIDVSSNFLDGPLSLDI 495
            N FS   P+   N ++++   +                      D   N         I
Sbjct: 522 YNSFSK-FPTQPLNSSTLKGFGIRNQR------------------DAQGNRTLREWPEGI 562

Query: 496 GNLKVVIGLDFSRNNLSG 513
                +  L    N++  
Sbjct: 563 TLCPSLTQLQIGSNDIRK 580

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  219 bits (559), Expect = 9e-62
 Identities = 68/444 (15%), Positives = 135/444 (30%), Gaps = 63/444 (14%)

Query: 57  LNISSFNLQGTITPQLGNLSSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQL---- 112
            N        T   +  NL  L  +++ +      +P+ +  +  ++L++ + N+     
Sbjct: 230 ENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGE 289

Query: 113 ----FGSLSSFIFNMSSMTTIDLSINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLS 168
                    +       +  I +  N L    P     + ++L K K+L  L   +N L 
Sbjct: 290 QLKDDWQALADAPVGEKIQIIYIGYNNLK-TFP-----VETSLQKMKKLGMLECLYNQLE 343

Query: 169 GAIPKEIGNLTKLKEIISTITNSTVCEIPREIGNLPYLARLALATNNLVGVVPVTIFNMS 228
           G +P   G+  KL                           L LA N +  +         
Sbjct: 344 GKLP-AFGSEIKLAS-------------------------LNLAYNQITEIPANFCGFTE 377

Query: 229 ALKEISLLNNSLSGSLPSRIDL-SLPNVETLNLGINSFSG-------TIPSSITNSSKLS 280
            ++ +S  +N L   +P+  D  S+  +  ++   N            +  +      +S
Sbjct: 378 QVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVS 436

Query: 281 DLELGENLFSGFIPNTIGNLRNLEFGNIADNYLTSSTPEL--SFLSSLTNCKKLKVLIVT 338
            + L  N  S F          L   N+  N LT            +  N   L  + + 
Sbjct: 437 SINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLR 496

Query: 339 GNPLDGILPKSIGNFSL-SLETILMANCSISGNIPQVVGNLSNLLVLELG------GNNL 391
            N L  +        +L  L  I ++  S S   P    N S L    +       GN  
Sbjct: 497 FNKLTKL-SDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRT 554

Query: 392 TGPIPVTFSQLQTLQAFDLTRNKLAGPITDELCHLARLHSLVLQGNKFSGSIPSCLGNLT 451
               P   +   +L    +  N +   + +++     +  L ++ N       S +    
Sbjct: 555 LREWPEGITLCPSLTQLQIGSNDIRK-VNEKI--TPNISVLDIKDNPNISIDLSYVCPYI 611

Query: 452 SVRVLYLGLNIFTSVLSSTIWNLK 475
              +  L  +    +      ++K
Sbjct: 612 EAGMYMLFYDKTQDIRGCDALDIK 635

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  135 bits (341), Expect = 4e-33
 Identities = 39/289 (13%), Positives = 87/289 (30%), Gaps = 31/289 (10%)

Query: 257 TLNLGINSFSGTIPSSITNSSKLSDLELGENLFSGFIPNTIGNLRNLEFGNIADNYLTSS 316
             N  ++ +      S+ ++ +++ L L     SG +P+ IG L  LE   +  +    +
Sbjct: 61  NFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVN 120

Query: 317 TPELSFLSSLTNCKKLKVLIVTGNPLDGILPKSIGNFSLS-LETILMANCSISGNIPQVV 375
              L     ++     +                      S L    + +     +I +  
Sbjct: 121 ER-LFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSS 179

Query: 376 GNLSNLLVLELGGNNLTGPIPVTFSQLQTLQAFDLTRNKLAGPIT--------------- 420
                   +    NN+T  +     +L  L+ F +  +                      
Sbjct: 180 RITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQY 238

Query: 421 ----DELCHLARLHSLVLQGNKFSGSIPSCLGNLTSVRVLYLGLNIFTSVLS-------- 468
                +  +L  L  + +        +P+ L  L  ++++ +  N   S           
Sbjct: 239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQAL 298

Query: 469 STIWNLKDILFIDVSSN-FLDGPLSLDIGNLKVVIGLDFSRNNLSGDIP 516
           +     + I  I +  N     P+   +  +K +  L+   N L G +P
Sbjct: 299 ADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP 347

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  241 bits (616), Expect = 3e-69
 Identities = 97/485 (20%), Positives = 177/485 (36%), Gaps = 34/485 (7%)

Query: 57  LNISSFNLQGTITPQLGNLSSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQLFGSL 116
           LN++   L+          S L +LD+  N +S   P     +  LK+L+   N+L    
Sbjct: 30  LNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLS 89

Query: 117 SSFIFNMSSMTTIDLSINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEIG 176
                  +++T + L  N +            +   K K L  L+L  N LS        
Sbjct: 90  DKTFAFCTNLTELHLMSNSIQKI-------KNNPFVKQKNLITLDLSHNGLSSTKLGTQV 142

Query: 177 NLTKLKEI------ISTITNSTVCEIPREIGNLPYLARLALATNNLVGVVPVTIFNMSAL 230
            L  L+E+      I  + +  +     +I     L +L L++N +    P     +  L
Sbjct: 143 QLENLQELLLSNNKIQALKSEEL-----DIFANSSLKKLELSSNQIKEFSPGCFHAIGRL 197

Query: 231 KEISLLNNSLSGSLPSRI--DLSLPNVETLNLGINSFSGTIPSSITN--SSKLSDLELGE 286
             + L N  L  SL  ++  +L+  ++  L+L  +  S T  ++      + L+ L+L  
Sbjct: 198 FGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSY 257

Query: 287 NLFSGFIPNTIGNLRNLEFGNIADNYLTSSTPE----LSFLSSLTNCKKLKVLIVTGNPL 342
           N  +    ++   L  LE+  +  N +          L  +  L   +      ++   L
Sbjct: 258 NNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASL 317

Query: 343 DGILPKSIGNFSLSLETILMANCSISGNIPQVVGNLSNLLVLELGGN--NLTGPIPVTFS 400
             I   S       LE + M +  I G    +   L NL  L L  +  +L      TF 
Sbjct: 318 PKIDDFSFQWLK-CLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFV 376

Query: 401 QLQT--LQAFDLTRNKLAGPITDELCHLARLHSLVLQGNKFSGSIP-SCLGNLTSVRVLY 457
            L    L   +LT+NK++   +D    L  L  L L  N+    +       L ++  +Y
Sbjct: 377 SLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIY 436

Query: 458 LGLNIFTSVLSSTIWNLKDILFIDVSSNFLDGPLSLD--IGNLKVVIGLDFSRNNLSGDI 515
           L  N +  +  ++   +  +  + +    L    S       L+ +  LD S NN++   
Sbjct: 437 LSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANIN 496

Query: 516 PITIG 520
              + 
Sbjct: 497 DDMLE 501

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  233 bits (597), Expect = 1e-66
 Identities = 82/492 (16%), Positives = 156/492 (31%), Gaps = 40/492 (8%)

Query: 57  LNISSFNLQGTITPQLGNLSSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQLFGSL 116
           LN+    L           ++L  L L  N +     +       L  LD S N L  + 
Sbjct: 78  LNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTK 137

Query: 117 SSFIFNMSSMTTIDLSINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEIG 176
                 + ++  + LS N++       +      +     L++L L  N +    P    
Sbjct: 138 LGTQVQLENLQELLLSNNKIQA-----LKSEELDIFANSSLKKLELSSNQIKEFSPGCFH 192

Query: 177 NLTKLKEII--STITNSTVCEIPREIGNLPYLARLALATNNLVGVVPVTIFNM--SALKE 232
            + +L  +   +     ++ E          +  L+L+ + L      T   +  + L  
Sbjct: 193 AIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTM 252

Query: 233 ISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSITNSSKLSDLELGENL---- 288
           + L  N+L+          LP +E   L  N+       S+     +  L L  +     
Sbjct: 253 LDLSYNNLNVVGNDSFA-WLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQS 311

Query: 289 -----FSGFIPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLD 343
                       +   L+ LE  N+ DN +          +  T    LK L ++ +   
Sbjct: 312 ISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKS-----NMFTGLINLKYLSLSNSFT- 365

Query: 344 GILPKSIGNFS----LSLETILMANCSISGNIPQVVGNLSNLLVLELGGNNLTGPIPV-T 398
            +   +   F       L  + +    IS         L +L VL+LG N +   +    
Sbjct: 366 SLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQE 425

Query: 399 FSQLQTLQAFDLTRNKLAGPITDELCHLARLHSLVLQGNKFSG--SIPSCLGNLTSVRVL 456
           +  L+ +    L+ NK      +    +  L  L+L+        S PS    L ++ +L
Sbjct: 426 WRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTIL 485

Query: 457 YLGLNIFTSVLSSTIWNLKDILFIDVSSNFL--------DGPLSLDIGNLKVVIGLDFSR 508
            L  N   ++    +  L+ +  +D+  N L         G     +  L  +  L+   
Sbjct: 486 DLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLES 545

Query: 509 NNLSGDIPITIG 520
           N           
Sbjct: 546 NGFDEIPVEVFK 557

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  221 bits (565), Expect = 4e-62
 Identities = 89/506 (17%), Positives = 185/506 (36%), Gaps = 65/506 (12%)

Query: 57  LNISSFNLQGTITPQLGNLSSLQTLDLSHNKLSGNIPSSIF---NMHTLKLLDFSDNQLF 113
           L +SS  ++         +  L  L L++ +L  ++   +       +++ L  S++QL 
Sbjct: 176 LELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLS 235

Query: 114 GSLSSFIFNM--SSMTTIDLSINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAI 171
            + ++    +  +++T +DLS N L+            + +   QLE   L +NN+    
Sbjct: 236 TTSNTTFLGLKWTNLTMLDLSYNNLNVV-------GNDSFAWLPQLEYFFLEYNNIQHLF 288

Query: 172 PKEIGNLTKLKEIISTITNSTVCEIPREIGNLPY-LARLALATNNLVGVVPVTIFNMSAL 230
              +  L  ++ +                 NL     + +++  +L  +   +   +  L
Sbjct: 289 SHSLHGLFNVRYL-----------------NLKRSFTKQSISLASLPKIDDFSFQWLKCL 331

Query: 231 KEISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSIT----NSSKLSDLELGE 286
           + +++ +N + G + S +   L N++ L+L  +  S    ++ T      S L  L L +
Sbjct: 332 EHLNMEDNDIPG-IKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTK 390

Query: 287 NLFSGFIPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGIL 346
           N  S    +    L +LE  ++  N +        +       + +  + ++ N    + 
Sbjct: 391 NKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEW----RGLENIFEIYLSYNKYLQLT 446

Query: 347 PKSIGNFSLSLETILMANCSISG--NIPQVVGNLSNLLVLELGGNNLTGPIPVTFSQLQT 404
             S      SL+ +++   ++    + P     L NL +L+L  NN+          L+ 
Sbjct: 447 RNSFALVP-SLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEK 505

Query: 405 LQAFDLTRNKLAGPITDELCHLARLHSLVLQGNKFSGSIPSCLGNLTSVRVLYLGLNIFT 464
           L+  DL  N LA                 L  +   G     L  L+ + +L L  N F 
Sbjct: 506 LEILDLQHNNLA----------------RLWKHANPGGPIYFLKGLSHLHILNLESNGFD 549

Query: 465 SVLSSTIWNLKDILFIDVSSNFLDGPLSLDIGNLKVVIGLDFSRNNLSGDIPITIGEGEI 524
            +      +L ++  ID+  N L+   +    N   +  L+  +N ++            
Sbjct: 550 EIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVF----- 604

Query: 525 PRGGPFANLTAKSFMGNELLCGLPDL 550
             G  F NLT      N   C    +
Sbjct: 605 --GPAFRNLTELDMRFNPFDCTCESI 628

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  219 bits (560), Expect = 1e-61
 Identities = 85/465 (18%), Positives = 154/465 (33%), Gaps = 46/465 (9%)

Query: 75  LSSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQLFGSLSSFIFNMSSMTTIDLSIN 134
            +++  L+L+HN+L     ++      L  LD   N +          +  +  ++L  N
Sbjct: 24  PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN 83

Query: 135 RLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEIGNLTKLKEI------ISTI 188
            LS            T + C  L EL+L  N++             L  +      +S+ 
Sbjct: 84  ELSQL-------SDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSST 136

Query: 189 TNSTVCEIPREIGNLPYLARLALATNNLVGVVP--VTIFNMSALKEISLLNNSLSGSLPS 246
                         L  L  L L+ N +  +    + IF  S+LK++ L +N +    P 
Sbjct: 137 -------KLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPG 189

Query: 247 RIDLSLPNVETLNLGINSFSGTIPSSIT---NSSKLSDLELGENLFSGFIPNTIGNLR-- 301
               ++  +  L L       ++   +     ++ + +L L  +  S     T   L+  
Sbjct: 190 CFH-AIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWT 248

Query: 302 NLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGILPKSIGN--------F 353
           NL   +++ N L           S     +L+   +  N +  +   S+           
Sbjct: 249 NLTMLDLSYNNLNVVGN-----DSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNL 303

Query: 354 SLSLETILMANCSISGNIPQVVGNLSNLLVLELGGNNLTGPIPVTFSQLQTLQAFDLTRN 413
             S     ++  S+          L  L  L +  N++ G     F+ L  L+   L+ +
Sbjct: 304 KRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNS 363

Query: 414 KLAG----PITDELCHLARLHSLVLQGNKFSGSIPSCLGNLTSVRVLYLGLNIFTSVLS- 468
             +       T      + LH L L  NK S         L  + VL LGLN     L+ 
Sbjct: 364 FTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTG 423

Query: 469 STIWNLKDILFIDVSSNFLDGPLSLDIGNLKVVIGLDFSRNNLSG 513
                L++I  I +S N            +  +  L   R  L  
Sbjct: 424 QEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKN 468

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  212 bits (542), Expect = 5e-59
 Identities = 85/434 (19%), Positives = 147/434 (33%), Gaps = 42/434 (9%)

Query: 57  LNISSFNLQGTITPQLGNL--SSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQLFG 114
           L++S+  L  T       L  ++L  LDLS+N L+     S   +  L+      N +  
Sbjct: 227 LSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQH 286

Query: 115 SLSSFIFNMSSMTTIDLSINRLSGELPANICK--IPSTLSKCKQLEELNLGFNNLSGAIP 172
             S  +  + ++  ++L  +     +           +    K LE LN+  N++ G   
Sbjct: 287 LFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKS 346

Query: 173 KEIGNLTKLKEI--------ISTITNSTVCEIPREIGNLPYLARLALATNNLVGVVPVTI 224
                L  LK +        + T+TN T   +         L  L L  N +  +     
Sbjct: 347 NMFTGLINLKYLSLSNSFTSLRTLTNETFVSLA-----HSPLHILNLTKNKISKIESDAF 401

Query: 225 FNMSALKEISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSITNSSKLSDLEL 284
             +  L+ + L  N +   L  +    L N+  + L  N +     +S      L  L L
Sbjct: 402 SWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLML 461

Query: 285 GENLFSGF--IPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPL 342
                      P+    LRNL   ++++N + +   ++     L   +KL++L +  N L
Sbjct: 462 RRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDM-----LEGLEKLEILDLQHNNL 516

Query: 343 DGILPKSIGNFSLSLETILMANCSISGNIPQVVGNLSNLLVLELGGNNLTGPIPVTFSQL 402
             +   +                   G     +  LS+L +L L  N         F  L
Sbjct: 517 ARLWKHAN-----------------PGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDL 559

Query: 403 QTLQAFDLTRNKLAGPITDELCHLARLHSLVLQGNKFSGSIPSCLG-NLTSVRVLYLGLN 461
             L+  DL  N L         +   L SL LQ N  +       G    ++  L +  N
Sbjct: 560 FELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFN 619

Query: 462 IFTSVLSSTIWNLK 475
            F     S  W + 
Sbjct: 620 PFDCTCESIAWFVN 633

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  157 bits (400), Expect = 2e-40
 Identities = 58/298 (19%), Positives = 109/298 (36%), Gaps = 17/298 (5%)

Query: 230 LKEISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSITNSSKLSDLELGENLF 289
            +     +  L+  +P  +     N+  LNL  N       ++ T  S+L+ L++G N  
Sbjct: 6   HEVADCSHLKLT-QVPDDL---PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI 61

Query: 290 SGFIPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGILPKS 349
           S   P     L  L+  N+  N L+  + +     +   C  L  L +  N +  I    
Sbjct: 62  SKLEPELCQKLPMLKVLNLQHNELSQLSDK-----TFAFCTNLTELHLMSNSIQKIKNNP 116

Query: 350 IGNFSLSLETILMANCSISGNIPQVVGNLSNLLVLELGGNNLTGPIPVTFS--QLQTLQA 407
                 +L T+ +++  +S         L NL  L L  N +              +L+ 
Sbjct: 117 FVKQK-NLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKK 175

Query: 408 FDLTRNKLAGPITDELCHLARLHSLVLQGNKFSGSIPSCLG---NLTSVRVLYLGLNIFT 464
            +L+ N++          + RL  L L   +   S+   L      TS+R L L  +  +
Sbjct: 176 LELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLS 235

Query: 465 SVLSSTIWNLKD--ILFIDVSSNFLDGPLSLDIGNLKVVIGLDFSRNNLSGDIPITIG 520
           +  ++T   LK   +  +D+S N L+   +     L  +       NN+      ++ 
Sbjct: 236 TTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLH 293

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 82.0 bits (203), Expect = 3e-16
 Identities = 28/151 (18%), Positives = 50/151 (33%), Gaps = 11/151 (7%)

Query: 58  NISSFNLQGTITPQLGNLSSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQLFGSLS 117
            +      G     L  LS L  L+L  N           ++  LK++D   N L    +
Sbjct: 518 RLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPA 577

Query: 118 SFIFNMSSMTTIDLSINRLSGELPANICKIPSTLSKC-KQLEELNLGFNNLSGAIPKEIG 176
           S   N  S+ +++L  N ++                  + L EL++ FN           
Sbjct: 578 SVFNNQVSLKSLNLQKNLITSV-------EKKVFGPAFRNLTELDMRFNPFDCTCESIAW 630

Query: 177 NLTKLKEI---ISTITNSTVCEIPREIGNLP 204
            +  + E    I  +++  +C  P      P
Sbjct: 631 FVNWINETHTNIPELSSHYLCNTPPHYHGFP 661

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  216 bits (552), Expect = 4e-64
 Identities = 89/339 (26%), Positives = 134/339 (39%), Gaps = 69/339 (20%)

Query: 11  QQALLALKAHISYDHTNLFARNWTSSTSVC--IWIGITCDV--NSHRVIGLNISSFNLQG 66
           +QALL +K  +  + T L   +W  +T  C   W+G+ CD    ++RV  L++S  NL  
Sbjct: 8   KQALLQIKKDLG-NPTTL--SSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPK 64

Query: 67  T---------------------------ITPQLGNLSSLQTLDLSHNKLSGNIPSSIFNM 99
                                       I P +  L+ L  L ++H  +SG IP  +  +
Sbjct: 65  PYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQI 124

Query: 100 HTLKLLDFSDNQLFGSLSSFIFNMSSMTTIDLSINRLSGELPANICKIPSTLSKCKQLEE 159
            TL  LDFS N L G+                               +P ++S    L  
Sbjct: 125 KTLVTLDFSYNALSGT-------------------------------LPPSISSLPNLVG 153

Query: 160 LNLGFNNLSGAIPKEIGNLTKLKEIISTITNSTVCEIPREIGNLPYLARLALATNNLVGV 219
           +    N +SGAIP   G+ +KL   ++   N    +IP    NL  LA + L+ N L G 
Sbjct: 154 ITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGD 212

Query: 220 VPVTIFNMSALKEISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSITNSSKL 279
             V   +    ++I L  NSL+  L         N+  L+L  N   GT+P  +T    L
Sbjct: 213 ASVLFGSDKNTQKIHLAKNSLAFDLGKVG--LSKNLNGLDLRNNRIYGTLPQGLTQLKFL 270

Query: 280 SDLELGENLFSGFIPNTIGNLRNLEFGNIADNYLTSSTP 318
             L +  N   G IP   GNL+  +    A+N     +P
Sbjct: 271 HSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCGSP 308

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  199 bits (508), Expect = 7e-58
 Identities = 84/392 (21%), Positives = 137/392 (34%), Gaps = 98/392 (25%)

Query: 170 AIPKEIGNLTKL---KEIISTITNSTVCEIPREIGNLPYLARLALATNNLVGV--VPVTI 224
            I K++GN T L            + +  +         +  L L+  NL     +P ++
Sbjct: 13  QIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSL 72

Query: 225 FNMSALKEISLLN-NSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSITNSSKLSDLE 283
            N+  L  + +   N+L G +P  I   L  +  L +   + SG IP  ++    L  L+
Sbjct: 73  ANLPYLNFLYIGGINNLVGPIPPAIA-KLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLD 131

Query: 284 LGENLFSGFIPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLD 343
              N  SG +P +I +L NL       N ++                             
Sbjct: 132 FSYNALSGTLPPSISSLPNLVGITFDGNRIS----------------------------- 162

Query: 344 GILPKSIGNFSLSLETILMANCSISGNIPQVVGNLSNLLVLELGGNNLTGPIPVTFSQLQ 403
           G +P S G+FS    ++ ++   ++G IP    NL NL  ++L  N L G   V F   +
Sbjct: 163 GAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDK 221

Query: 404 TLQAFDLTRNKLAGPITDELCHLARLHSLVLQGNKFSGSIPSCLGNLTSVRVLYLGLNIF 463
             Q   L +N LA  +  ++     L+ L L+ N+  G++P  L  L  +  L +     
Sbjct: 222 NTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNV----- 275

Query: 464 TSVLSSTIWNLKDILFIDVSSNFLDGPLSLDIGNLKVVIGLDFSRNNLSGDIPITIGEGE 523
                                                      S NNL          GE
Sbjct: 276 -------------------------------------------SFNNLC---------GE 283

Query: 524 IPRGGPFANLTAKSFMGNELLCGLPDLQVSPC 555
           IP+GG        ++  N+ LCG P   +  C
Sbjct: 284 IPQGGNLQRFDVSAYANNKCLCGSP---LPAC 312

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  224 bits (573), Expect = 6e-64
 Identities = 82/489 (16%), Positives = 161/489 (32%), Gaps = 55/489 (11%)

Query: 57  LNISSFNLQGTITPQLGNLSSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQLFGSL 116
           L++S   L+   +    +   LQ LDLS  ++      +  ++  L  L  + N +    
Sbjct: 33  LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 92

Query: 117 SSFIFNMSSMTTIDLSINRLSGELPANICKIPSTLSKCKQLEELNLGFNNL-SGAIPKEI 175
                 +SS+  +      L+             +   K L+ELN+  N + S  +P+  
Sbjct: 93  LGAFSGLSSLQKLVAVETNLASL-------ENFPIGHLKTLKELNVAHNLIQSFKLPEYF 145

Query: 176 GNLTKLKEI------ISTITNSTVCEIPREIGNLPYL----ARLALATNNLVGVVPVTIF 225
            NLT L+ +      I +I          ++  L  +      L L+ N +  + P   F
Sbjct: 146 SNLTNLEHLDLSSNKIQSI-------YCTDLRVLHQMPLLNLSLDLSLNPMNFIQP-GAF 197

Query: 226 NMSALKEISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTI---PSSITNSSKLSDL 282
               L +++L NN  S ++       L  +E   L +  F           +    L +L
Sbjct: 198 KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNL 257

Query: 283 ELGEN------LFSGFIPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLI 336
            + E        +   I +    L N+   ++    +         +   +     + L 
Sbjct: 258 TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER-------VKDFSYNFGWQHLE 310

Query: 337 VTGNPLDGILPKSIGNF-SLSLETILMANCSISGNIPQVVGNLSNLLVLELGGNNLT--G 393
           +            + +   L+         S  G       +L +L  L+L  N L+  G
Sbjct: 311 LVNCKFGQFPTLKLKSLKRLTF-------TSNKGGNAFSEVDLPSLEFLDLSRNGLSFKG 363

Query: 394 PIPVTFSQLQTLQAFDLTRNKLAGPITDELCHLARLHSLVLQGNKFSGSIP-SCLGNLTS 452
               +     +L+  DL+ N +   ++     L +L  L  Q +        S   +L +
Sbjct: 364 CCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN 422

Query: 453 VRVLYLGLNIFTSVLSSTIWNLKDILFIDVSSNFLDGPLSLDI-GNLKVVIGLDFSRNNL 511
           +  L +         +     L  +  + ++ N        DI   L+ +  LD S+  L
Sbjct: 423 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 482

Query: 512 SGDIPITIG 520
               P    
Sbjct: 483 EQLSPTAFN 491

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  223 bits (571), Expect = 1e-63
 Identities = 80/495 (16%), Positives = 161/495 (32%), Gaps = 67/495 (13%)

Query: 57  LNISSFNLQGTITPQLGNLSSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQLFGSL 116
           L++S   +Q        +LS L TL L+ N +      +   + +L+ L   +  L    
Sbjct: 57  LDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLE 116

Query: 117 SSFIFNMSSMTTIDLSINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEIG 176
           +  I ++ ++  ++++ N +         K+P   S    LE L+L  N +      ++ 
Sbjct: 117 NFPIGHLKTLKELNVAHNLIQSF------KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR 170

Query: 177 NLTKLKEIISTITNSTVCEIPREIGNLPYLARLALATNNLVGVVPVTIFNMSALKEISLL 236
            L ++  +                        L L+ N +  + P   F    L +++L 
Sbjct: 171 VLHQMPLL---------------------NLSLDLSLNPMNFIQP-GAFKEIRLHKLTLR 208

Query: 237 NNSLSGSLPSRIDLSLPNVETLNLGINSFSGTI---PSSITNSSKLSDLELGEN------ 287
           NN  S ++       L  +E   L +  F           +    L +L + E       
Sbjct: 209 NNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLD 268

Query: 288 LFSGFIPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGILP 347
            +   I +    L N+   ++    +         +   +     + L +          
Sbjct: 269 YYLDDIIDLFNCLTNVSSFSLVSVTIER-------VKDFSYNFGWQHLELVNCKFGQFPT 321

Query: 348 KSIGNFSL------------------SLETILMANCSIS--GNIPQVVGNLSNLLVLELG 387
             + +                     SLE + ++   +S  G   Q     ++L  L+L 
Sbjct: 322 LKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLS 381

Query: 388 GNNLTGPIPVTFSQLQTLQAFDLTRNKLAGPI-TDELCHLARLHSLVLQGNKFSGSIPSC 446
            N +   +   F  L+ L+  D   + L           L  L  L +       +    
Sbjct: 382 FNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI 440

Query: 447 LGNLTSVRVLYLGLNIFT-SVLSSTIWNLKDILFIDVSSNFLDGPLSLDIGNLKVVIGLD 505
              L+S+ VL +  N F  + L      L+++ F+D+S   L+        +L  +  L+
Sbjct: 441 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 500

Query: 506 FSRNNLSGDIPITIG 520
            S NN          
Sbjct: 501 MSHNNFFSLDTFPYK 515

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  206 bits (527), Expect = 2e-57
 Identities = 88/481 (18%), Positives = 177/481 (36%), Gaps = 44/481 (9%)

Query: 57  LNISSFNLQGTITPQLGNLSSLQTLDLSHNKL-SGNIPSSIFNMHTLKLLDFSDNQLFGS 115
           L     NL       +G+L +L+ L+++HN + S  +P    N+  L+ LD S N++   
Sbjct: 105 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164

Query: 116 LSSFIFNMSSMT----TIDLSINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAI 171
             + +  +  M     ++DLS+N ++         I     K  +L +L L  N  S  +
Sbjct: 165 YCTDLRVLHQMPLLNLSLDLSLNPMNF--------IQPGAFKEIRLHKLTLRNNFDSLNV 216

Query: 172 PKE----IGNLTKLKEIISTITNSTVCE--IPREIGNLPYL--ARLALATNNLVGVVPVT 223
            K     +  L   + ++    N    E      +  L  L      LA  +      + 
Sbjct: 217 MKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIID 276

Query: 224 IF-NMSALKEISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSITNSSKLSDL 282
           +F  ++ +   SL++ ++        +      + L L    F       + +  +L+  
Sbjct: 277 LFNCLTNVSSFSLVSVTIERVKDFSYNFGW---QHLELVNCKFGQFPTLKLKSLKRLTFT 333

Query: 283 ELGENLFSGFIPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPL 342
                   G    +  +L +LEF +++ N L+            T+   LK L ++ N +
Sbjct: 334 SN-----KGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTS---LKYLDLSFNGV 385

Query: 343 DGILPKSIGNFSLSLETILMANCSISGNIPQ-VVGNLSNLLVLELGGNNLTGPIPVTFSQ 401
             +   +       LE +   + ++       V  +L NL+ L++   +        F+ 
Sbjct: 386 ITM-SSNFLGLE-QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG 443

Query: 402 LQTLQAFDLTRNKLAGPI-TDELCHLARLHSLVLQGNKFSGSIPSCLGNLTSVRVLYLGL 460
           L +L+   +  N        D    L  L  L L   +     P+   +L+S++VL +  
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 503

Query: 461 NIFTSVLSSTIWNLKDILFIDVSSNFLDGP----LSLDIGNLKVVIGLDFSRNNLSGDIP 516
           N F S+ +     L  +  +D S N +       L     +L     L+ ++N+ +    
Sbjct: 504 NNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAF---LNLTQNDFACTCE 560

Query: 517 I 517
            
Sbjct: 561 H 561

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  183 bits (466), Expect = 2e-49
 Identities = 74/436 (16%), Positives = 150/436 (34%), Gaps = 26/436 (5%)

Query: 57  LNISSFNLQGTITPQLGNLSSLQTLDLSHNKLSGNIPSSIF-NMHTLKLLDFSDNQLFGS 115
           L++S   +   I P       L  L L +N  S N+  +    +  L++      +    
Sbjct: 182 LDLSLNPMNF-IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE 240

Query: 116 --LSSFIFN-MSSMTTIDLSINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIP 172
             L  F  + +  +  + +   RL+  L   +  I    +    +   +L    +     
Sbjct: 241 GNLEKFDKSALEGLCNLTIEEFRLAY-LDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD 299

Query: 173 KEIGNLTKLKEIISTITNSTVCEIPREIGNLPYLARLALATNNLVGVVPVTIFNMSALKE 232
                    + +   +          ++ +L  L   +    N       +  ++ +L+ 
Sbjct: 300 --FSYNFGWQHL-ELVNCKFGQFPTLKLKSLKRLTFTSNKGGN-----AFSEVDLPSLEF 351

Query: 233 ISLLNNSLSGS-LPSRIDLSLPNVETLNLGINSFSGTIPSSITNSSKLSDLELGENLFSG 291
           + L  N LS     S+ D    +++ L+L  N    T+ S+     +L  L+   +    
Sbjct: 352 LDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQ 410

Query: 292 FIP-NTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGILPKSI 350
               +   +LRNL + +I+  +   +               L+VL + GN         I
Sbjct: 411 MSEFSVFLSLRNLIYLDISHTHTRVAFNG-----IFNGLSSLEVLKMAGNSFQENFLPDI 465

Query: 351 GNFSLSLETILMANCSISGNIPQVVGNLSNLLVLELGGNNLTGPIPVTFSQLQTLQAFDL 410
                +L  + ++ C +    P    +LS+L VL +  NN        +  L +LQ  D 
Sbjct: 466 FTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDY 525

Query: 411 TRNKLAGPITDELCHLAR-LHSLVLQGNKFSGSIPSC--LGNLTSVRVLYLGLNIFTSVL 467
           + N +      EL H    L  L L  N F+ +      L  +   R L + +       
Sbjct: 526 SLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECAT 585

Query: 468 SSTIWNLKDILFIDVS 483
            S    +  +L ++++
Sbjct: 586 PSDKQGMP-VLSLNIT 600

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  126 bits (318), Expect = 3e-30
 Identities = 43/263 (16%), Positives = 89/263 (33%), Gaps = 25/263 (9%)

Query: 53  RVIGLNISSFNLQGTITPQLGNLSSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQL 112
             + L+ +  + +G  +      +SL+ LDLS N +   + S+   +  L+ LDF  + L
Sbjct: 350 EFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNL 408

Query: 113 FGSLSSFIF-NMSSMTTIDLSINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAI 171
                  +F ++ ++  +D+S                   +    LE L +  N+     
Sbjct: 409 KQMSEFSVFLSLRNLIYLDISHTHTRVA-------FNGIFNGLSSLEVLKMAGNSFQENF 461

Query: 172 PKEI-GNLTKLKEI------ISTITNSTVCEIPREIGNLPYLARLALATNNLVGVVPVTI 224
             +I   L  L  +      +  +        P    +L  L  L ++ NN   +     
Sbjct: 462 LPDIFTELRNLTFLDLSQCQLEQL-------SPTAFNSLSSLQVLNMSHNNFFSLDTFPY 514

Query: 225 FNMSALKEISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSS--ITNSSKLSDL 282
             +++L+ +    N +  S    +     ++  LNL  N F+ T      +        L
Sbjct: 515 KCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQL 574

Query: 283 ELGENLFSGFIPNTIGNLRNLEF 305
            +         P+    +  L  
Sbjct: 575 LVEVERMECATPSDKQGMPVLSL 597

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  106 bits (266), Expect = 6e-24
 Identities = 34/170 (20%), Positives = 63/170 (37%), Gaps = 5/170 (2%)

Query: 352 NFSLSLETILMANCSISGNIPQVVGNLSNLLVLELGGNNLTGPIPVTFSQLQTLQAFDLT 411
           N   S + + ++   +         +   L VL+L    +       +  L  L    LT
Sbjct: 25  NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILT 84

Query: 412 RNKLAGPITDELCHLARLHSLVLQGNKFSGSIPSCLGNLTSVRVLYLGLNIFTSV-LSST 470
            N +          L+ L  LV      +      +G+L +++ L +  N+  S  L   
Sbjct: 85  GNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY 144

Query: 471 IWNLKDILFIDVSSNFLDGPLSLDIGNLK----VVIGLDFSRNNLSGDIP 516
             NL ++  +D+SSN +      D+  L     + + LD S N ++   P
Sbjct: 145 FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP 194

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 63.5 bits (155), Expect = 2e-10
 Identities = 27/163 (16%), Positives = 43/163 (26%), Gaps = 50/163 (30%)

Query: 359 TILMANCSISGNIPQVVGNL-SNLLVLELGGNNLTGPIPVTFSQLQTLQAFDLTRNKLAG 417
             +   C    N  ++  NL  +   L+L  N L      +F     LQ  DL+R ++  
Sbjct: 8   PNITYQCM-ELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT 66

Query: 418 PITDELCHLARLHSLVLQGNKFSGSIPSCLGNLTSVRVLYLGLNIFTSVLSSTIWNLKDI 477
                   L+ L +L+L GN            L+S++ L                     
Sbjct: 67  IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA------------------- 107

Query: 478 LFIDVSSNFLDGPLSLDIGNLKVVIGLDFSRNNLSGDIPITIG 520
                                           NL+      IG
Sbjct: 108 -----------------------------VETNLASLENFPIG 121

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 59.7 bits (145), Expect = 3e-09
 Identities = 19/97 (19%), Positives = 39/97 (40%), Gaps = 3/97 (3%)

Query: 50  NSHRVIGLNISSFNLQGTITPQLGNLSSLQTLDLSHNKLSGNIPSSIFNMHT-LKLLDFS 108
           +   +  LN+S  N     T     L+SLQ LD S N +  +    + +  + L  L+ +
Sbjct: 492 SLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLT 551

Query: 109 DNQLFGSLSS--FIFNMSSMTTIDLSINRLSGELPAN 143
            N    +     F+  +     + + + R+    P++
Sbjct: 552 QNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSD 588

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  225 bits (575), Expect = 2e-62
 Identities = 76/539 (14%), Positives = 155/539 (28%), Gaps = 86/539 (15%)

Query: 32  NWTSSTSVCIWIGITCDVNSHRVIGLNISSFNLQGTITPQLGNLSSLQTLDLSHNKLSGN 91
           NW  +  + +W                             L N   +  L L+     G 
Sbjct: 301 NWNFNKELDMWGDQPGV----------------------DLDNNGRVTGLSLAGFGAKGR 338

Query: 92  IPSSIFNMHTLKLLDFSDNQLFGSLSSFIFNMSSMTTIDLSINRLSGELPANICKIPSTL 151
           +P +I  +  LK+L F  +    S   F     +    +   +R+              L
Sbjct: 339 VPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRL 398

Query: 152 SKCKQLEELNLGFNNLSGAIPKEIGNLTKLKEIISTITNSTVCEIPREIGNLPYLARLAL 211
           +     + L    N      P +  +   LK+       + +  I + I  L  L  +  
Sbjct: 399 N---LSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYF 455

Query: 212 ATNNLVGV-------------------VPVTIFNMSALKEISLLNNSLSGSLPSRIDLSL 252
           A +                          ++  N+  L ++ L N      LP  +   L
Sbjct: 456 ANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFL-YDL 514

Query: 253 PNVETLNLGINSFSG---------TIPSSITNSSKLSDLELGENLFSGFIPN-TIGNLRN 302
           P +++LN+  N              +        K+    +G N    F  + ++  +  
Sbjct: 515 PELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVK 574

Query: 303 LEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGILPKSIGNFSLSLETILM 362
           L   +   N +         L +     KL  L +  N ++ I P+    F+  +E +  
Sbjct: 575 LGLLDCVHNKVRH-------LEAFGTNVKLTDLKLDYNQIEEI-PEDFCAFTDQVEGLGF 626

Query: 363 ANCSISGNIPQVV--GNLSNLLVLELGGNNLTGPIPVTFS-----QLQTLQAFDLTRNKL 415
           ++  +   IP +    ++  +  ++   N +              +        L+ N++
Sbjct: 627 SHNKLKY-IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEI 685

Query: 416 AGPITDELCHLARLHSLVLQGNKFS-------GSIPSCLGNLTSVRVLYLGLNIFTSVLS 468
               T+     + + +++L  N  +               N   +  + L  N  TS+  
Sbjct: 686 QKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSD 745

Query: 469 S-TIWNLKDILFIDVSSNFLDGPLSLDIGNLKVVIGLDFSR------NNLSGDIPITIG 520
                 L  +  +DVS N           N   +             N +    P  I 
Sbjct: 746 DFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGIT 803

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  203 bits (519), Expect = 5e-55
 Identities = 65/472 (13%), Positives = 152/472 (32%), Gaps = 60/472 (12%)

Query: 61  SFNLQGTITPQLGNLSSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQLFGSLSSFI 120
             N    I+  +  L+ LQ +  +++  + +  +        +  +    + + +     
Sbjct: 433 LTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVD-----WEDANSDYAKQYENEELSW 487

Query: 121 FNMSSMTTIDLSINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEIGNLTK 180
            N+  +T ++L       +       +P  L    +L+ LN+  N       +   + T+
Sbjct: 488 SNLKDLTDVELYNCPNMTQ-------LPDFLYDLPELQSLNIACNRGIS-AAQLKADWTR 539

Query: 181 LKEIISTITNSTVCEIPREIGNLPYLARLALATNNLVGV-VPVTIFNMSALKEISLLNNS 239
                          +  +    P +    +  NNL       ++  M  L  +  ++N 
Sbjct: 540 ---------------LADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNK 584

Query: 240 LSGSLPSRIDLS-LPNVETLNLGINSFSGTIPSSI-TNSSKLSDLELGENLFSGFIPNT- 296
           +   L +         +  L L  N     IP      + ++  L    N     IPN  
Sbjct: 585 VR-HLEA---FGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKY-IPNIF 638

Query: 297 -IGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGILPKSIGNFSL 355
              ++  +   + + N + S    +S             + ++ N +     +     S 
Sbjct: 639 NAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGS- 697

Query: 356 SLETILMANCSIS-------GNIPQVVGNLSNLLVLELGGNNLTG-PIPVTFSQLQTLQA 407
            + TI+++N  ++               N   L  ++L  N LT        + L  L  
Sbjct: 698 PISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSN 757

Query: 408 FDLTRNKLAGPITDELCHLARL------HSLVLQGNKFSGSIPSCLGNLTSVRVLYLGLN 461
            D++ N  +     +  + ++L      H    +GN+     P+ +    S+  L +G N
Sbjct: 758 MDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSN 816

Query: 462 IFTSVLSSTIWNLKDILFIDVSSN-FLDGPLSLDIGNLKV-VIGLDFSRNNL 511
               V       L     +D++ N  +   ++     ++  +  L + +   
Sbjct: 817 DIRKVDEKLTPQLY---ILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQD 865

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  192 bits (490), Expect = 2e-51
 Identities = 70/416 (16%), Positives = 124/416 (29%), Gaps = 59/416 (14%)

Query: 57  LNISSFNLQGTITPQLGNLSSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQL---- 112
            N               NL  L  ++L +      +P  ++++  L+ L+ + N+     
Sbjct: 472 ANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAA 531

Query: 113 -----FGSLSSFIFNMSSMTTIDLSINRLSGELPANICKIPSTLSKCKQLEELNLGFNNL 167
                +  L+        +    +  N L  E P       ++L K  +L  L+   N +
Sbjct: 532 QLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFP-----ASASLQKMVKLGLLDCVHNKV 585

Query: 168 SGAIPKEIGNLTKLKEI------ISTITNSTVCEIPREIG-NLPYLARLALATNNLVGVV 220
                +  G   KL ++      I         EIP +       +  L  + N L  + 
Sbjct: 586 R--HLEAFGTNVKLTDLKLDYNQIE--------EIPEDFCAFTDQVEGLGFSHNKLKYIP 635

Query: 221 P-VTIFNMSALKEISLLNNSLSGSLPSRI-----DLSLPNVETLNLGINSFSGTIPSSIT 274
                 ++  +  +    N +  S    I     D    N  T+ L  N           
Sbjct: 636 NIFNAKSVYVMGSVDFSYNKIG-SEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFA 694

Query: 275 NSSKLSDLELGENLFS-------GFIPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLT 327
             S +S + L  NL +               N   L   ++  N LTS + +       T
Sbjct: 695 TGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRA----T 750

Query: 328 NCKKLKVLIVTGNPLDGILPKSIGNFS----LSL-ETILMANCSISGNIPQVVGNLSNLL 382
               L  + V+ N      P    N S      +          I    P  +    +L+
Sbjct: 751 TLPYLSNMDVSYNCFSSF-PTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLI 809

Query: 383 VLELGGNNLTGPIPVTFSQLQTLQAFDLTRNKLAGPITDELCHLARLHSLVLQGNK 438
            L++G N++         QL  L   D+  N         +C        VL  +K
Sbjct: 810 QLQIGSNDIRKVDEKLTPQLYIL---DIADNPNISIDVTSVCPYIEAGMYVLLYDK 862

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  144 bits (364), Expect = 1e-35
 Identities = 53/303 (17%), Positives = 98/303 (32%), Gaps = 29/303 (9%)

Query: 58  NISSFNLQG---TITPQLGNLSSLQTLDLSHNKLSGNIPSSIF-NMHTLKLLDFSDNQLF 113
            +   +            G    L  L L +N++   IP         ++ L FS N+L 
Sbjct: 574 KLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK 632

Query: 114 GSLSSF-IFNMSSMTTIDLSINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIP 172
              + F   ++  M ++D S N++      NI        K      + L +N +     
Sbjct: 633 YIPNIFNAKSVYVMGSVDFSYNKIGS-EGRNISCSMDDY-KGINASTVTLSYNEIQKFPT 690

Query: 173 KEIGNLTKLKEI------ISTITNSTVCEIPREIGNLPYLARLALATNNLVGVVPVTIF- 225
           +     + +  I      +++I  +++        N   L  + L  N L  +       
Sbjct: 691 ELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRAT 750

Query: 226 NMSALKEISLLNNSLSGSLPSRIDLSLPNVETLNL------GINSFSGTIPSSITNSSKL 279
            +  L  + +  N  S S P++  L+   ++   +        N      P+ IT    L
Sbjct: 751 TLPYLSNMDVSYNCFS-SFPTQP-LNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSL 808

Query: 280 SDLELGENLFSGFIPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTG 339
             L++G N            L  L   +IADN   S     S    +     + VL+   
Sbjct: 809 IQLQIGSNDIRKVDEKLTPQLYIL---DIADNPNISI-DVTSVCPYIEA--GMYVLLYDK 862

Query: 340 NPL 342
              
Sbjct: 863 TQD 865

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 99.2 bits (247), Expect = 2e-21
 Identities = 40/341 (11%), Positives = 84/341 (24%), Gaps = 41/341 (12%)

Query: 223 TIFNMSALKEISLLNNSLSGSLPSRIDLSLPNVET--LNLGINSFSGTIPSSITNSSKLS 280
            I +  ALK I    +  +    S    +  +      N  ++ +       + N+ +++
Sbjct: 267 YIKDYKALKAIWEALDGKNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVT 326

Query: 281 DLELGENLFSGFIPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGN 340
            L L      G +P+ IG L  L+  +   +  T S           +  + +   +  +
Sbjct: 327 GLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMH 386

Query: 341 PLDGILPKSIGNFSLSLETILMANCSISGNIPQVVGNLSNLLVLELGGNNLTGPIPVTFS 400
                L          L    +        I +          +    N +T  I     
Sbjct: 387 YKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQ 445

Query: 401 QLQTLQAFDLTRNKLAGPITDELCHLARLHSLVLQGNKFSGSIPSCLGNLTSVRVLYLGL 460
           +L  LQ      +                        K   +      NL  +  + L  
Sbjct: 446 RLTKLQIIYFANSPFTYDNIAVD-----WEDANSDYAKQYENEELSWSNLKDLTDVELYN 500

Query: 461 NIFTSVLSSTIWNLKDILFIDVSSNFLDGPLSLDIGNLKVVIGLDFSRNNLSGDIPITIG 520
               + L   +++L                       L+    L+ + N       +   
Sbjct: 501 CPNMTQLPDFLYDLP---------------------ELQS---LNIACNRGISAAQLKAD 536

Query: 521 EGEIPRG-GPFANLTAKSFMGNEL--------LCGLPDLQV 552
              +         +       N L        L  +  L +
Sbjct: 537 WTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGL 577

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 42.2 bits (99), Expect = 8e-04
 Identities = 20/160 (12%), Positives = 47/160 (29%), Gaps = 1/160 (0%)

Query: 394 PIPVTFSQLQTLQAFDLTRNKLAGPITDELCHLARLHSLVLQGNKFSGSIPSCLGNLTSV 453
              V  ++L       +   + A  I D     A   +L  +  ++     +   +  + 
Sbjct: 243 SFTVIDNKLTKDANVPIQLKETAEYIKDYKALKAIWEALDGKNWRYYSGTINNTIHSLN- 301

Query: 454 RVLYLGLNIFTSVLSSTIWNLKDILFIDVSSNFLDGPLSLDIGNLKVVIGLDFSRNNLSG 513
                 L+++       + N   +  + ++     G +   IG L  +  L F  ++ + 
Sbjct: 302 WNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETV 361

Query: 514 DIPITIGEGEIPRGGPFANLTAKSFMGNELLCGLPDLQVS 553
              +   E   P          +       L     L +S
Sbjct: 362 SGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLS 401

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  207 bits (530), Expect = 7e-58
 Identities = 94/484 (19%), Positives = 165/484 (34%), Gaps = 33/484 (6%)

Query: 57  LNISSFNLQGTITPQLGNLSSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQLFGSL 116
           L +++  L       L    +L+ L      +S      + N  TL+ L    N +    
Sbjct: 86  LVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIK 145

Query: 117 SSFIFNMSSMTTIDLSINRLSGELPA------------------NICKIPSTLSKCKQLE 158
               F    +  +D   N +                        +I  I          +
Sbjct: 146 LPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQ 205

Query: 159 ELNLGFNNLSGAIPKEIGNLTKLKEIISTITNSTVCEIPREI---GNLPYLARLALATNN 215
            LN G       I K + N T     + T  +    +I   +        +  + L  + 
Sbjct: 206 SLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHY 265

Query: 216 LVGVVPVTIFNMSALKEISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSITN 275
              +   T    S L+E+ L    LS  LPS + + L  ++ L L  N F      S +N
Sbjct: 266 FFNISSNTFHCFSGLQELDLTATHLS-ELPSGL-VGLSTLKKLVLSANKFENLCQISASN 323

Query: 276 SSKLSDLELGENLFSGFI-PNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKV 334
              L+ L +  N     +    + NL NL   +++ + + +S      L +L++   L+ 
Sbjct: 324 FPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSH---LQS 380

Query: 335 LIVTGNPLDGILPKSIGNFSLSLETILMANCSISGNIPQVV-GNLSNLLVLELGGNNLTG 393
           L ++ N    +  ++       LE + +A   +     Q    NL  L VL L  + L  
Sbjct: 381 LNLSYNEPLSLKTEAFKECP-QLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDI 439

Query: 394 PIPVTFSQLQTLQAFDLTRNKLAGPITDE---LCHLARLHSLVLQGNKFSGSIPSCLGNL 450
                F  L  LQ  +L  N        +   L  L RL  LVL     S        +L
Sbjct: 440 SSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSL 499

Query: 451 TSVRVLYLGLNIFTSVLSSTIWNLKDILFIDVSSNFLDGPLSLDIGNLKVVIGLDFSRNN 510
             +  + L  N  TS     + +LK  ++++++SN +   L   +  L     ++  +N 
Sbjct: 500 KMMNHVDLSHNRLTSSSIEALSHLK-GIYLNLASNHISIILPSLLPILSQQRTINLRQNP 558

Query: 511 LSGD 514
           L   
Sbjct: 559 LDCT 562

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  206 bits (527), Expect = 2e-57
 Identities = 79/481 (16%), Positives = 157/481 (32%), Gaps = 38/481 (7%)

Query: 57  LNISSFNLQGTITPQLGNLSSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQLFGSL 116
           L  S   L          L +L  LDL+  ++      +  + H L  L  + N L    
Sbjct: 38  LEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMA 97

Query: 117 SSFIFNMSSMTTIDLSINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEIG 176
            + +    ++  +      +S             L   K LE L LG N++S     +  
Sbjct: 98  ETALSGPKALKHLFFIQTGISSI-------DFIPLHNQKTLESLYLGSNHISSIKLPKGF 150

Query: 177 NLTKLKEI------ISTITNSTVCEIPREIGNLPYLARLALA-TNNLVGVVPVTIFNMSA 229
              KLK +      I  ++          + +L     L+L    N +  +    F+ + 
Sbjct: 151 PTEKLKVLDFQNNAIHYLSKED-------MSSLQQATNLSLNLNGNDIAGIEPGAFDSAV 203

Query: 230 LKEISLLNNSLSGSLPSRID-LSLPNVETLNLGINSFSGTIPSSITNSSKLS--DLELGE 286
            + ++         +   +   ++ ++              P+      ++S   + L +
Sbjct: 204 FQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQK 263

Query: 287 NLFSGFIPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGIL 346
           + F     NT      L+  ++   +L+         S L     LK L+++ N  + + 
Sbjct: 264 HYFFNISSNTFHCFSGLQELDLTATHLS------ELPSGLVGLSTLKKLVLSANKFENLC 317

Query: 347 PKSIGNFSLSLETILMANCSISGNI-PQVVGNLSNLLVLELGGNNLT--GPIPVTFSQLQ 403
             S  NF  SL  + +   +    +    + NL NL  L+L  +++       +    L 
Sbjct: 318 QISASNFP-SLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLS 376

Query: 404 TLQAFDLTRNKLAGPITDELCHLARLHSLVLQGNKFSGSIP-SCLGNLTSVRVLYLGLNI 462
            LQ+ +L+ N+     T+      +L  L L   +       S   NL  ++VL L  ++
Sbjct: 377 HLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSL 436

Query: 463 FTSVLSSTIWNLKDILFIDVSSNFLDGPLSLDIG---NLKVVIGLDFSRNNLSGDIPITI 519
                      L  +  +++  N               L  +  L  S  +LS       
Sbjct: 437 LDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAF 496

Query: 520 G 520
            
Sbjct: 497 T 497

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  189 bits (482), Expect = 2e-51
 Identities = 75/461 (16%), Positives = 150/461 (32%), Gaps = 37/461 (8%)

Query: 75  LSSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQLFGSLSSFIFNMSSMTTIDLSIN 134
            +S + L+ S N L     ++   +  L  LD +  Q++        +   + T+ L+ N
Sbjct: 32  PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN 91

Query: 135 RLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEIGNLTKLKEI------ISTI 188
            L            + LS  K L+ L      +S      + N   L+ +      IS+I
Sbjct: 92  PLIFM-------AETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSI 144

Query: 189 TNSTVCEIPREIGNLPYLARLALATNNLVGVVPVTIFNMSALKEISL-LNNSLSGSLPSR 247
                     +      L  L    N +  +    + ++     +SL LN +    +   
Sbjct: 145 -------KLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPG 197

Query: 248 IDLSLPNVETLNLGINSFSGTIPSSITNSS--KLSDLELGENLFSGFIPNTIGNLRNLEF 305
                   ++LN G       I   + NS+   L      +       P     L  +  
Sbjct: 198 A-FDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSV 256

Query: 306 G--NIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGILPKSIGNFSLSLETILMA 363
              N+  +Y  + +       +      L+ L +T   L  + P  +   S +L+ ++++
Sbjct: 257 ESINLQKHYFFNISSN-----TFHCFSGLQELDLTATHLSEL-PSGLVGLS-TLKKLVLS 309

Query: 364 NCSISGNIPQVVGNLSNLLVLELGGNNLTGPI-PVTFSQLQTLQAFDLTRNKLA--GPIT 420
                        N  +L  L + GN     +       L+ L+  DL+ + +       
Sbjct: 310 ANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCN 369

Query: 421 DELCHLARLHSLVLQGNKFSGSIPSCLGNLTSVRVLYLGLNIFTSVLSSTIW-NLKDILF 479
            +L +L+ L SL L  N+              + +L L         + + + NL  +  
Sbjct: 370 LQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKV 429

Query: 480 IDVSSNFLDGPLSLDIGNLKVVIGLDFSRNNLSGDIPITIG 520
           +++S + LD         L  +  L+   N+          
Sbjct: 430 LNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTN 470

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  119 bits (301), Expect = 3e-28
 Identities = 52/288 (18%), Positives = 95/288 (32%), Gaps = 17/288 (5%)

Query: 231 KEISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSITNSSKLSDLELGENLFS 290
           K  +  N  L+  +P  +     + E L    N       ++ +    L+ L+L      
Sbjct: 15  KTYNCENLGLN-EIPGTL---PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIY 70

Query: 291 GFIPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGILPKSI 350
               +T  +   L+   +  N L           +L+  K LK L      +  I    +
Sbjct: 71  WIHEDTFQSQHRLDTLVLTANPLIFMAET-----ALSGPKALKHLFFIQTGISSIDFIPL 125

Query: 351 GNFSLSLETILMANCSISGNIPQVVGNLSNLLVLELGGNNLTGPIPVTFSQLQTLQ--AF 408
            N   +LE++ + +  IS            L VL+   N +        S LQ     + 
Sbjct: 126 HNQK-TLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSL 184

Query: 409 DLTRNKLAGPITDELCHLARLHSLVLQGNKFSGSIPSCLGN--LTSVRVLYLGLNIFTSV 466
           +L  N +AG I       A   SL   G +    I   L N  + S+ +          +
Sbjct: 185 NLNGNDIAG-IEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDI 243

Query: 467 LSSTIWNLKD--ILFIDVSSNFLDGPLSLDIGNLKVVIGLDFSRNNLS 512
             +    L +  +  I++  ++     S        +  LD +  +LS
Sbjct: 244 SPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS 291

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 92.4 bits (230), Expect = 2e-19
 Identities = 35/168 (20%), Positives = 59/168 (35%), Gaps = 2/168 (1%)

Query: 351 GNFSLSLETILMANCSISGNIPQVVGNLSNLLVLELGGNNLTGPIPVTFSQLQTLQAFDL 410
           G    S E +  +   +          L NL  L+L    +      TF     L    L
Sbjct: 29  GTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVL 88

Query: 411 TRNKLAGPITDELCHLARLHSLVLQGNKFSGSIPSCLGNLTSVRVLYLGLNIFTSVLSST 470
           T N L       L     L  L       S      L N  ++  LYLG N  +S+    
Sbjct: 89  TANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPK 148

Query: 471 IWNLKDILFIDVSSNFLDGPLSLDIGNLK--VVIGLDFSRNNLSGDIP 516
            +  + +  +D  +N +      D+ +L+    + L+ + N+++G  P
Sbjct: 149 GFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEP 196

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 79.3 bits (196), Expect = 2e-15
 Identities = 43/189 (22%), Positives = 71/189 (37%), Gaps = 18/189 (9%)

Query: 57  LNISSFNLQGTITPQLGNLSSLQTLDLSHNKLSGNI---PSSIFNMHTLKLLDFSDNQLF 113
           LN+S   L  +       L +LQ L+L  N          +S+  +  L++L  S   L 
Sbjct: 430 LNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLS 489

Query: 114 GSLSSFIFNMSSMTTIDLSINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPK 173
                   ++  M  +DLS NRL+             LS  K +  LNL  N++S  +P 
Sbjct: 490 SIDQHAFTSLKMMNHVDLSHNRLTSS-------SIEALSHLKGIY-LNLASNHISIILPS 541

Query: 174 EIGNLTKLKEI-ISTITNSTVCEIPREIGNLPYLARLALATNNLVGVVPVTIFNMSALKE 232
            +  L++ + I +    N   C       N+ +L         L         N   L+ 
Sbjct: 542 LLPILSQQRTINLRQ--NPLDCTC----SNIYFLEWYKENMQKLEDTEDTLCENPPLLRG 595

Query: 233 ISLLNNSLS 241
           + L + +LS
Sbjct: 596 VRLSDVTLS 604

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  193 bits (493), Expect = 6e-53
 Identities = 85/468 (18%), Positives = 157/468 (33%), Gaps = 28/468 (5%)

Query: 57  LNISSFNLQGTITPQLGNLSSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQLFG-S 115
           L ++   +Q         L+SL+ L     KL+      I  + TLK L+ + N +    
Sbjct: 85  LILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCK 144

Query: 116 LSSFIFNMSSMTTIDLSINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEI 175
           L ++  N++++  +DLS N +   +  N  +      +      L++  N +   I  + 
Sbjct: 145 LPAYFSNLTNLVHVDLSYNYIQT-ITVNDLQFLRENPQ--VNLSLDMSLNPIDF-IQDQA 200

Query: 176 GNLTKLKEIISTITNSTVCEIPREIGNLPYLARLALATNNLVGVVPVTIFNMSA---LKE 232
               KL E+      ++   +   + NL  L    L          + IF  S    L +
Sbjct: 201 FQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCD 260

Query: 233 ISLLNNSLSGSLPSRIDLS----LPNVETLNLGINSFSGTIPSSITNSSKLSDLELGENL 288
           +++    L+ +     D+     L NV  ++L   S        +    K   L +    
Sbjct: 261 VTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSI--KYLEDVPKHFKWQSLSIIRCQ 318

Query: 289 FSGFIPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGILPK 348
              F    +  L++L    +  N       + S          L  L ++ N L      
Sbjct: 319 LKQFPTLDLPFLKSL---TLTMN-------KGSISFKKVALPSLSYLDLSRNALSFSGCC 368

Query: 349 SIGNFSL-SLETILMANCSISGNIPQVVGNLSNLLVLELGGNNLTGPIPV-TFSQLQTLQ 406
           S  +    SL  + ++       +      L  L  L+   + L        F  L+ L 
Sbjct: 369 SYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLL 427

Query: 407 AFDLTRNKLAGPITDELCHLARLHSLVLQGNKFSGSIPSC-LGNLTSVRVLYLGLNIFTS 465
             D++              L  L++L + GN F  +  S    N T++  L L       
Sbjct: 428 YLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQ 487

Query: 466 VLSSTIWNLKDILFIDVSSNFLDGPLSLDIGNLKVVIGLDFSRNNLSG 513
           +       L  +  +++S N L    S     L  +  LD S N +  
Sbjct: 488 ISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIET 535

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  182 bits (463), Expect = 6e-49
 Identities = 88/494 (17%), Positives = 163/494 (32%), Gaps = 50/494 (10%)

Query: 57  LNISSFNLQGTITPQLGNLSSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQLFGSL 116
           +++S   L+   +    N S LQ LDLS  ++      +   +H L  L  + N +    
Sbjct: 37  IDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFS 96

Query: 117 SSFIFNMSSMTTIDLSINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGA-IPKEI 175
                 ++S+  +     +L+             + +   L++LN+  N +    +P   
Sbjct: 97  PGSFSGLTSLENLVAVETKLASL-------ESFPIGQLITLKKLNVAHNFIHSCKLPAYF 149

Query: 176 GNLTKLKEI------ISTITNSTVCEIPREIGNLPYLARLALATNNLVGVVPVTIFNMSA 229
            NLT L  +      I TIT + +  +     N      L ++ N +   +    F    
Sbjct: 150 SNLTNLVHVDLSYNYIQTITVNDLQFLRE---NPQVNLSLDMSLNPI-DFIQDQAFQGIK 205

Query: 230 LKEISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSITNSSKLS--------D 281
           L E++L  N  S ++      +L  +    L +  F       I   S +         +
Sbjct: 206 LHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDE 265

Query: 282 LELGENLFSGFIPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLT-------------- 327
             L               L N+   ++A   +     ++                     
Sbjct: 266 FRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIK-YLEDVPKHFKWQSLSIIRCQLKQFPT 324

Query: 328 -NCKKLKVLIVTGNPLDGILPKSIGNFSLSLETILMANCSISGNIPQVVGNL--SNLLVL 384
            +   LK L +T N       K       SL  + ++  ++S +      +L  ++L  L
Sbjct: 325 LDLPFLKSLTLTMNKGSISFKKV---ALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHL 381

Query: 385 ELGGNNLTGPIPVTFSQLQTLQAFDLTRNKLAG-PITDELCHLARLHSLVLQGNKFSGSI 443
           +L  N     +   F  L+ LQ  D   + L           L +L  L +         
Sbjct: 382 DLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDF 440

Query: 444 PSCLGNLTSVRVLYLGLNIFTSVLSSTIW-NLKDILFIDVSSNFLDGPLSLDIGNLKVVI 502
                 LTS+  L +  N F     S ++ N  ++ F+D+S   L+         L  + 
Sbjct: 441 DGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQ 500

Query: 503 GLDFSRNNLSGDIP 516
            L+ S NNL     
Sbjct: 501 LLNMSHNNLLFLDS 514

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  173 bits (441), Expect = 5e-46
 Identities = 78/436 (17%), Positives = 148/436 (33%), Gaps = 36/436 (8%)

Query: 57  LNISSFNLQGTITPQ-LGNLSSLQTLDLSHNKLSGNIPSSIFNMHTLKL----LDFSDNQ 111
           LN++   +     P    NL++L  +DLS+N +     + +  +         LD S N 
Sbjct: 133 LNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNP 192

Query: 112 LFGSLSSFIFNMSSMTTIDLSINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAI 171
           +   +    F    +  + L  N  S  +     +  + L   + +        NL    
Sbjct: 193 I-DFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFE 251

Query: 172 PKEIGNLTKLK-EIISTITNSTVCEIPREIGNLPYLARLALATNNLVGVVPVTIFNMSAL 230
           P  +  L  +  +       +   +   +   L  ++ ++LA  ++  +    +      
Sbjct: 252 PSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLED--VPKHFKW 309

Query: 231 KEISLLNNSLSG----SLPS--RIDLS------------LPNVETLNLGINSFSGTIPSS 272
           + +S++   L       LP    + L+            LP++  L+L  N+ S +   S
Sbjct: 310 QSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCS 369

Query: 273 ITN--SSKLSDLELGENLFSGFIPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCK 330
            ++  ++ L  L+L  N     +      L  L+  +   + L   T      S+  + +
Sbjct: 370 YSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTE----FSAFLSLE 424

Query: 331 KLKVLIVTGNPLDGILPKSIGNFSLSLETILMANCSISGNIPQVV-GNLSNLLVLELGGN 389
           KL  L ++               + SL T+ MA  S   N    V  N +NL  L+L   
Sbjct: 425 KLLYLDISYTNTKIDFDGIFLGLT-SLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKC 483

Query: 390 NLTGPIPVTFSQLQTLQAFDLTRNKLAGPITDELCHLARLHSLVLQGNKFSGSIPSCLGN 449
            L       F  L  LQ  +++ N L    +     L  L +L    N+   S       
Sbjct: 484 QLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHF 543

Query: 450 LTSVRVLYLGLNIFTS 465
             S+    L  N    
Sbjct: 544 PKSLAFFNLTNNSVAC 559

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  173 bits (440), Expect = 6e-46
 Identities = 79/471 (16%), Positives = 154/471 (32%), Gaps = 36/471 (7%)

Query: 57  LNISSFNLQGTITPQLGNLSSLQTLDLSHNKLSG-NIPSSIFNMHTLKLLDFSDNQL--- 112
           L      L    +  +G L +L+ L+++HN +    +P+   N+  L  +D S N +   
Sbjct: 109 LVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTI 168

Query: 113 -FGSLSSFIFNMSSMTTIDLSINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAI 171
               L     N     ++D+S+N +          I     +  +L EL L  N  S  I
Sbjct: 169 TVNDLQFLRENPQVNLSLDMSLNPID--------FIQDQAFQGIKLHELTLRGNFNSSNI 220

Query: 172 PKEIG----NLTKLKEIISTITNSTVCEIPRE--IGNLPYLAR--LALATNNLVGVVPVT 223
            K        L   + I+    +    EI     +  L  +      L   N      V 
Sbjct: 221 MKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK 280

Query: 224 IFNMSALKEISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSITNSSKLSDLE 283
              ++ +  +SL   S+               ++L++            +     L  L 
Sbjct: 281 FHCLANVSAMSLAGVSIKYLEDVPKHFKW---QSLSIIRCQLKQFPTLDLPF---LKSLT 334

Query: 284 LGENLFSGFIPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLD 343
           L  N  S  I      L +L + +++ N L+ S           +   L+ L ++ N   
Sbjct: 335 LTMNKGS--ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNS---LRHLDLSFNGA- 388

Query: 344 GILPKSIGNFSLSLETILMANCSISGNIPQVV-GNLSNLLVLELGGNNLTGPIPVTFSQL 402
            I+  +       L+ +   + ++          +L  LL L++   N        F  L
Sbjct: 389 IIMSANFMGLE-ELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGL 447

Query: 403 QTLQAFDLTRNKLAGPITDE-LCHLARLHSLVLQGNKFSGSIPSCLGNLTSVRVLYLGLN 461
            +L    +  N            +   L  L L   +           L  +++L +  N
Sbjct: 448 TSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHN 507

Query: 462 IFTSVLSSTIWNLKDILFIDVSSNFLDGPLSLDIGNLKVVIGLDFSRNNLS 512
               + SS    L  +  +D S N ++    +     K +   + + N+++
Sbjct: 508 NLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  172 bits (437), Expect = 2e-45
 Identities = 79/461 (17%), Positives = 151/461 (32%), Gaps = 47/461 (10%)

Query: 76  SSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQLFGSLSSFIFNMSSMTTIDLSINR 135
           SS + +DLS N L      S  N   L+ LD S  ++          +  ++ + L+ N 
Sbjct: 32  SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP 91

Query: 136 LSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEIGNLTKLKEI------ISTIT 189
           +           P + S    LE L      L+      IG L  LK++      I +  
Sbjct: 92  IQS-FS------PGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSC- 143

Query: 190 NSTVCEIPREIGNLPYLARLALATNNLVGVVPVTIFNMSALK----EISLLNNSLSGSLP 245
                ++P    NL  L  + L+ N +  +    +  +         + +  N +   + 
Sbjct: 144 -----KLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQ 197

Query: 246 SRIDLSLPNVETLNLGINSFSGTIPS-SITNSSKLSDLELGENLFSG------FIPNTIG 298
            +       +  L L  N  S  I    + N + L    L    F        F P+ + 
Sbjct: 198 DQA-FQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIME 256

Query: 299 NLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGILPKSIGNFSLSLE 358
            L ++        Y    + ++     L N   +  + + G  +  +            +
Sbjct: 257 GLCDVTIDEFRLTYTNDFSDDIVKFHCLAN---VSAMSLAGVSIKYLED---VPKHFKWQ 310

Query: 359 TILMANCSISGNIPQVVGNLSNLLVLELGGNNLTGPIPVTFSQLQTLQAFDLTRNKLA-- 416
           ++ +  C +         +L  L  L L  N  +  I      L +L   DL+RN L+  
Sbjct: 311 SLSIIRCQLKQFPTL---DLPFLKSLTLTMNKGS--ISFKKVALPSLSYLDLSRNALSFS 365

Query: 417 GPITDELCHLARLHSLVLQGNKFSGSIPSCLGNLTSVRVLYLGLNIFTSVLSSTIW-NLK 475
           G  +        L  L L  N     + +    L  ++ L    +    V   + + +L+
Sbjct: 366 GCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLE 424

Query: 476 DILFIDVSSNFLDGPLSLDIGNLKVVIGLDFSRNNLSGDIP 516
            +L++D+S              L  +  L  + N+   +  
Sbjct: 425 KLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTL 465

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  114 bits (287), Expect = 2e-26
 Identities = 55/267 (20%), Positives = 95/267 (35%), Gaps = 19/267 (7%)

Query: 73  GNLSSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQL--FGSLSSFIFNMSSMTTID 130
            +L  L++L L+ NK S  I      + +L  LD S N L   G  S      +S+  +D
Sbjct: 325 LDLPFLKSLTLTMNKGS--ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLD 382

Query: 131 LSINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKE-IGNLTKLKEI-ISTI 188
           LS N            + +     ++L+ L+   + L          +L KL  + IS  
Sbjct: 383 LSFNGAII--------MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISY- 433

Query: 189 TNSTVCEIPREIGNLPYLARLALATNNLVGVVPVTIF-NMSALKEISLLNNSLSGSLPSR 247
             +T  +       L  L  L +A N+        +F N + L  + L    L   +   
Sbjct: 434 -TNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLE-QISWG 491

Query: 248 IDLSLPNVETLNLGINSFSGTIPSSITNSSKLSDLELGENLFSGFIPNTIGNLRNLEFGN 307
           +  +L  ++ LN+  N+      S       LS L+   N             ++L F N
Sbjct: 492 VFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFN 551

Query: 308 IADNYLTSSTPELSFLSSLTNCKKLKV 334
           + +N +     E          +K  +
Sbjct: 552 LTNNSVA-CICEHQKFLQWVKEQKQFL 577

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 99.3 bits (248), Expect = 9e-22
 Identities = 50/237 (21%), Positives = 92/237 (38%), Gaps = 16/237 (6%)

Query: 291 GFIPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGILPKSI 350
           G +   I  + N+ +    D  L+    ++            K + ++ NPL  +   S 
Sbjct: 2   GSLNPCIEVVPNITY-QCMDQKLSKVPDDIP--------SSTKNIDLSFNPLKILKSYSF 52

Query: 351 GNFSLSLETILMANCSISGNIPQVVGNLSNLLVLELGGNNLTGPIPVTFSQLQTLQAFDL 410
            NFS  L+ + ++ C I     +    L +L  L L GN +    P +FS L +L+    
Sbjct: 53  SNFS-ELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA 111

Query: 411 TRNKLAGPITDELCHLARLHSLVLQGNKFSG-SIPSCLGNLTSVRVLYLGLNIFTSVLSS 469
              KLA   +  +  L  L  L +  N      +P+   NLT++  + L  N   ++  +
Sbjct: 112 VETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVN 171

Query: 470 TIWNLKDILF----IDVSSNFLDGPLSLDIGNLKVVIGLDFSRNNLSGDIPITIGEG 522
            +  L++       +D+S N +D  +         +  L    N  S +I  T  + 
Sbjct: 172 DLQFLRENPQVNLSLDMSLNPIDF-IQDQAFQGIKLHELTLRGNFNSSNIMKTCLQN 227

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  165 bits (419), Expect = 5e-44
 Identities = 83/459 (18%), Positives = 176/459 (38%), Gaps = 57/459 (12%)

Query: 63  NLQGTITPQLGNLSSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQLFGSLSSFIFN 122
            L       +  L++L  ++ S+N+L+   P  + N+  L  +  ++NQ+  +  + + N
Sbjct: 55  RLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQI--ADITPLAN 110

Query: 123 MSSMTTIDLSINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEIGNLTKLK 182
           ++++T + L  N+++             L     L  L L  N +S      +  LT L+
Sbjct: 111 LTNLTGLTLFNNQITD---------IDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQ 159

Query: 183 EI-----ISTITNSTVCEIPREIGNLPYLARLALATNNLVGVVPVTIFNMSALKEISLLN 237
           ++     ++ +           + NL  L RL +++N +  +    +  ++ L+ +   N
Sbjct: 160 QLSFGNQVTDLKP---------LANLTTLERLDISSNKVSDISV--LAKLTNLESLIATN 208

Query: 238 NSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSITNSSKLSDLELGENLFSGFIPNTI 297
           N +S   P      L N++ L+L  N        ++ + + L+DL+L  N  S   P  +
Sbjct: 209 NQISDITP---LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--L 261

Query: 298 GNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGILPKSIGNFSLSL 357
             L  L    +  N +++       +S L     L  L +  N L+ I P  I N   +L
Sbjct: 262 SGLTKLTELKLGANQISN-------ISPLAGLTALTNLELNENQLEDISP--ISNLK-NL 311

Query: 358 ETILMANCSISGNIPQVVGNLSNLLVLELGGNNLTGPIPVTFSQLQTLQAFDLTRNKLAG 417
             + +   +IS   P  V +L+ L  L    N ++       + L  +       N+++ 
Sbjct: 312 TYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDVSS--LANLTNINWLSAGHNQISD 367

Query: 418 PITDELCHLARLHSLVLQGNKFSGSIPSCLGNLTSVRVLYLGLNIFTSVLSSTIWNLKDI 477
                L +L R+  L L    ++ +  +   N++    +         +  +TI +    
Sbjct: 368 LT--PLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTG--ALIAPATISDGGSY 423

Query: 478 LFIDVSSNFLDGPLSLDIGNLKVVIGLDFSRNNLSGDIP 516
              D++ N       +        + +       SG + 
Sbjct: 424 TEPDITWNLPSYTNEV-SYTFSQPVTIGKGTTTFSGTVT 461

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  163 bits (416), Expect = 1e-43
 Identities = 92/476 (19%), Positives = 176/476 (36%), Gaps = 63/476 (13%)

Query: 53  RVIGLNISSFNLQGTITPQLGNLSSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQL 112
            +    I+       I      L+      L    ++  +     ++  +  L      +
Sbjct: 2   PLGSATITQDTPINQIFT-DTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGI 58

Query: 113 FGSLSSFIFNMSSMTTIDLSINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIP 172
             S+   +  ++++T I+ S N+L+           + L    +L ++ +  N ++   P
Sbjct: 59  -KSIDG-VEYLNNLTQINFSNNQLTD---------ITPLKNLTKLVDILMNNNQIADITP 107

Query: 173 KEIGNLTKLKEI------ISTITNSTVCEIPREIGNLPYLARLALATNNLVGVVPVTIFN 226
             + NLT L  +      I+ I           + NL  L RL L++N +  +    +  
Sbjct: 108 --LANLTNLTGLTLFNNQITDIDP---------LKNLTNLNRLELSSNTISDISA--LSG 154

Query: 227 MSALKEISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSITNSSKLSDLELGE 286
           +++L+++S   N ++   P     +L  +E L++  N  S    S +   + L  L    
Sbjct: 155 LTSLQQLS-FGNQVTDLKPLA---NLTTLERLDISSNKVSD--ISVLAKLTNLESLIATN 208

Query: 287 NLFSGFIPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGIL 346
           N  S   P  +G L NL+  ++  N L         + +L +   L  L +  N +  + 
Sbjct: 209 NQISDITP--LGILTNLDELSLNGNQLKD-------IGTLASLTNLTDLDLANNQISNLA 259

Query: 347 PKSIGNFSLSLETILMANCSISGNIPQVVGNLSNLLVLELGGNNLTGPIPVTFSQLQTLQ 406
           P  +   +  L  + +    IS   P  +  L+ L  LEL  N L    P   S L+ L 
Sbjct: 260 P--LSGLT-KLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLT 312

Query: 407 AFDLTRNKLAGPITDELCHLARLHSLVLQGNKFSGSIPSCLGNLTSVRVLYLGLNIFTSV 466
              L  N ++      +  L +L  L    NK S    S L NLT++  L  G N  + +
Sbjct: 313 YLTLYFNNISDIS--PVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDL 368

Query: 467 LSSTIWNLKDILFIDVSSNFLDGPLSLDIGNLKVVIGLDFSRNNLSGDIPITIGEG 522
             + + NL  I  + ++         ++      +     +        P TI +G
Sbjct: 369 --TPLANLTRITQLGLNDQAWTN-APVNYKANVSIPNTVKNVTGAL-IAPATISDG 420

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 75.0 bits (185), Expect = 3e-14
 Identities = 32/191 (16%), Positives = 70/191 (36%), Gaps = 20/191 (10%)

Query: 58  NISSFNLQG---TITPQLGNLSSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQLFG 114
            +++  L          + NL +L  L L  N +S   P  + ++  L+ L F +N++  
Sbjct: 288 ALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKV-- 343

Query: 115 SLSSFIFNMSSMTTIDLSINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKE 174
           S  S + N++++  +    N++S           + L+   ++ +L L     +   P  
Sbjct: 344 SDVSSLANLTNINWLSAGHNQISD---------LTPLANLTRITQLGLNDQAWTN-APVN 393

Query: 175 IGNLTKLKEIISTITNSTVCEIPREIGNLPYLARLALATNNLVGVVPVTIFNMSALKEIS 234
                 +   +  +T + +   P  I +        + T NL        +  S    I 
Sbjct: 394 YKANVSIPNTVKNVTGALI--APATISDGGSYTEPDI-TWNLPSYTNEVSYTFSQPVTIG 450

Query: 235 LLNNSLSGSLP 245
               + SG++ 
Sbjct: 451 KGTTTFSGTVT 461

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  153 bits (388), Expect = 5e-41
 Identities = 79/371 (21%), Positives = 156/371 (42%), Gaps = 40/371 (10%)

Query: 45  ITCDVNSHRVIGLNISSFNLQGTITPQLGNLSSLQTLDLSHNKLSGNIPSSIFNMHTLKL 104
           I  D +    I   +   ++   +T     L S+  L ++  K++      I  +  L+ 
Sbjct: 15  IFPDADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVAS--IQGIEYLTNLEY 70

Query: 105 LDFSDNQLFGSLSSFIFNMSSMTTIDLSINRLSGELPANICKIPSTLSKCKQLEELNLGF 164
           L+ + NQ+  +  S + N+  +T + +  N+++           S L     L EL L  
Sbjct: 71  LNLNGNQI--TDISPLSNLVKLTNLYIGTNKIT---------DISALQNLTNLRELYLNE 119

Query: 165 NNLSGAIPKEIGNLTKLKEIISTITNSTVCEIPREIGNLPYLARLALATNNLVGVVPVTI 224
           +N+S   P  + NLTK+  +   +  +        + N+  L  L +  + +  V P+  
Sbjct: 120 DNISDISP--LANLTKMYSL--NLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIA- 174

Query: 225 FNMSALKEISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSITNSSKLSDLEL 284
            N++ L  +SL  N +    P     SL ++      +N  +   P  + N ++L+ L++
Sbjct: 175 -NLTDLYSLSLNYNQIEDISPLA---SLTSLHYFTAYVNQITDITP--VANMTRLNSLKI 228

Query: 285 GENLFSGFIPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDG 344
           G N  +   P  + NL  L +  I  N ++        ++++ +  KLK+L V  N +  
Sbjct: 229 GNNKITDLSP--LANLSQLTWLEIGTNQISD-------INAVKDLTKLKMLNVGSNQISD 279

Query: 345 ILPKSIGNFSLSLETILMANCSISGNIPQVVGNLSNLLVLELGGNNLTGPIPVTFSQLQT 404
           I    + N S  L ++ + N  +     +V+G L+NL  L L  N++T   P   + L  
Sbjct: 280 I--SVLNNLS-QLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSK 334

Query: 405 LQAFDLTRNKL 415
           + + D     +
Sbjct: 335 MDSADFANQVI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  147 bits (373), Expect = 5e-39
 Identities = 71/375 (18%), Positives = 144/375 (38%), Gaps = 52/375 (13%)

Query: 72  LGNLSSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQLFGSLSSFIFNMSSMTTIDL 131
             +L+      L    ++     +   + ++  L  +  ++  S+   I  ++++  ++L
Sbjct: 18  DADLAEGIRAVLQKASVTD--VVTQEELESITKLVVAGEKV-ASIQG-IEYLTNLEYLNL 73

Query: 132 SINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEIGNLTKLKEI------I 185
           + N+++           S LS   +L  L +G N ++      + NLT L+E+      I
Sbjct: 74  NGNQITD---------ISPLSNLVKLTNLYIGTNKIT--DISALQNLTNLRELYLNEDNI 122

Query: 186 STITNSTVCEIPREIGNLPYLARLALATNNLVGVVPVTIFNMSALKEISLLNNSLSGSLP 245
           S I+          + NL  +  L L  N+ +  +   + NM+ L  +++  + +    P
Sbjct: 123 SDISP---------LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP 172

Query: 246 SRIDLSLPNVETLNLGINSFSGTIPSSITNSSKLSDLELGENLFSGFIPNTIGNLRNLEF 305
                +L ++ +L+L  N      P  + + + L       N  +   P  + N+  L  
Sbjct: 173 IA---NLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNS 225

Query: 306 GNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGILPKSIGNFSLSLETILMANC 365
             I +N +T        LS L N  +L  L +  N +  I   ++ + +  L+ + + + 
Sbjct: 226 LKIGNNKITD-------LSPLANLSQLTWLEIGTNQISDI--NAVKDLT-KLKMLNVGSN 275

Query: 366 SISGNIPQVVGNLSNLLVLELGGNNLTGPIPVTFSQLQTLQAFDLTRNKLAGPITDELCH 425
            IS     V+ NLS L  L L  N L          L  L    L++N +       L  
Sbjct: 276 QISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIR--PLAS 331

Query: 426 LARLHSLVLQGNKFS 440
           L+++ S         
Sbjct: 332 LSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  125 bits (316), Expect = 2e-31
 Identities = 71/379 (18%), Positives = 149/379 (39%), Gaps = 56/379 (14%)

Query: 140 LPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEIGNLTKLKEIISTITNSTVCEIPRE 199
           LPA I +I    +   +     L   +++  +      L  + +++  +    V  I   
Sbjct: 8   LPAPINQI-FPDADLAEGIRAVLQKASVTDVVT--QEELESITKLV--VAGEKVASIQ-G 61

Query: 200 IGNLPYLARLALATNNLVGVVPVTIFNMSALKEISLLNNSLSGSLPSRIDLSLPNVETLN 259
           I  L  L  L L  N +  + P  + N+  L  + +  N ++    S +  +L N+  L 
Sbjct: 62  IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITD--ISALQ-NLTNLRELY 116

Query: 260 LGINSFSGTIPSSITNSSKLSDLELGENLFSGFIPNTIGNLRNLEFGNIADNYLTSSTPE 319
           L  ++ S    S + N +K+  L LG N     +   + N+  L +  + ++ +      
Sbjct: 117 LNEDNISD--ISPLANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKD---- 169

Query: 320 LSFLSSLTNCKKLKVLIVTGNPLDGILPKSIGNFSLSLETILMANCSISGNIPQVVGNLS 379
              ++ + N   L  L +  N ++ I P                           + +L+
Sbjct: 170 ---VTPIANLTDLYSLSLNYNQIEDISP---------------------------LASLT 199

Query: 380 NLLVLELGGNNLTGPIPVTFSQLQTLQAFDLTRNKLAGPITDELCHLARLHSLVLQGNKF 439
           +L       N +T   P   + +  L +  +  NK+       L +L++L  L +  N+ 
Sbjct: 200 SLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITD--LSPLANLSQLTWLEIGTNQI 255

Query: 440 SGSIPSCLGNLTSVRVLYLGLNIFTSVLSSTIWNLKDILFIDVSSNFLDGPLSLDIGNLK 499
           S    + + +LT +++L +G N  + +  S + NL  +  + +++N L       IG L 
Sbjct: 256 SD--INAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLT 311

Query: 500 VVIGLDFSRNNLSGDIPIT 518
            +  L  S+N+++   P+ 
Sbjct: 312 NLTTLFLSQNHITDIRPLA 330

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 53.7 bits (130), Expect = 1e-07
 Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 2/68 (2%)

Query: 70  PQLGNLSSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQLFGSLSSFIFNMSSMTTI 129
             L NLS L +L L++N+L       I  +  L  L  S N +  +    + ++S M + 
Sbjct: 281 SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHI--TDIRPLASLSKMDSA 338

Query: 130 DLSINRLS 137
           D +   + 
Sbjct: 339 DFANQVIK 346

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3tl8_A* Length = 326

 Score =  151 bits (383), Expect = 1e-40
 Identities = 65/220 (29%), Positives = 93/220 (42%), Gaps = 73/220 (33%)

Query: 615 IRRFSYHELLRATDRFSENNLIGIG-----------NGMEVAVKVF----HQQYERALKS 659
           ++RFS  EL  A+D FS  N++G G           +G  VAVK       Q  E     
Sbjct: 17  LKRFSLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERTQGGELQ--- 73

Query: 660 FEDECEVRKRIRHRNLV------------------------------------------- 676
           F+ E E+     HRNL+                                           
Sbjct: 74  FQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPESQPPLDWPKR 133

Query: 677 -KIISSS---LEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQ-LSK 731
            +I   S   L YLH      IIH D+K +N+LLDE+  A + DFG+AKL+  +D  ++ 
Sbjct: 134 QRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVT- 192

Query: 732 QTQTLATIGYMAPEYGTKGRVSTRGDVCSFG-----IISG 766
            T    TIG++APEY + G+ S + DV  +G     +I+G
Sbjct: 193 -TAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITG 231

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  153 bits (388), Expect = 2e-39
 Identities = 82/456 (17%), Positives = 165/456 (36%), Gaps = 36/456 (7%)

Query: 76  SSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQLFGSLSSFIF-NMSSMTTIDLSIN 134
            S + LDLS N L      S F+   L++LD S  ++  ++    + ++S ++T+ L+ N
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI-QTIEDGAYQSLSHLSTLILTGN 86

Query: 135 RLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEIGNLTKLKEIISTITNSTVC 194
            +   L           S    L++L     NL+      IG+L  LKE+          
Sbjct: 87  PIQ-SLA------LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF 139

Query: 195 EIPREIGNLPYLARLALATNNLVGVVPVTIFNMSALK----EISLLNNSLSGSLPSRIDL 250
           ++P    NL  L  L L++N +  +    +  +  +      + L  N ++  +      
Sbjct: 140 KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGA-F 197

Query: 251 SLPNVETLNLGINSFSGTIPSSITN---SSKLSDLELGE----NLFSGFIPNTIGNLRNL 303
               +  L L  N  S  +  +        ++  L LGE         F  + +  L NL
Sbjct: 198 KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNL 257

Query: 304 EFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGILPKSIGNFSLSLETILMA 363
                   YL     ++  L +      +    +    ++ +   S   ++   + + + 
Sbjct: 258 TIEEFRLAYLDYYLDDIIDLFN--CLTNVSSFSLVSVTIERVKDFS---YNFGWQHLELV 312

Query: 364 NCSISGNIPQVVGNLSNLLVLELGGNNLTGPIPVTFSQLQTLQAFDLTRNKLA--GPITD 421
           NC      P +   L +L  L    N        +   L +L+  DL+RN L+  G  + 
Sbjct: 313 NCKFG-QFPTL--KLKSLKRLTFTSNKGGNAF--SEVDLPSLEFLDLSRNGLSFKGCCSQ 367

Query: 422 ELCHLARLHSLVLQGNKFSGSIPSCLGNLTSVRVLYLGLNIFTSVLSSTIW-NLKDILFI 480
                  L  L L  N    ++ S    L  +  L    +    +   +++ +L++++++
Sbjct: 368 SDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL 426

Query: 481 DVSSNFLDGPLSLDIGNLKVVIGLDFSRNNLSGDIP 516
           D+S        +     L  +  L  + N+   +  
Sbjct: 427 DISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 462

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  151 bits (383), Expect = 8e-39
 Identities = 95/496 (19%), Positives = 177/496 (35%), Gaps = 61/496 (12%)

Query: 57  LNISSFNLQGTITPQLGNLSSLQTLDLSHNKLSGNIPSSIF-NMHTLKLLDFSDNQLFGS 115
           L++S   L+   +    +   LQ LDLS  ++   I    + ++  L  L  + N +  S
Sbjct: 33  LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPI-QS 90

Query: 116 LSSFIF-NMSSMTTIDLSINRLSGELPANICKIPSTLSKCKQLEELNLGFNNL-SGAIPK 173
           L+   F  +SS+  +      L+             +   K L+ELN+  N + S  +P+
Sbjct: 91  LALGAFSGLSSLQKLVAVETNLASL-------ENFPIGHLKTLKELNVAHNLIQSFKLPE 143

Query: 174 EIGNLTKLKEI------ISTITNSTVCEIPREIGNLPYL-ARLALATNNLVGVVPVTIFN 226
              NLT L+ +      I +I  + +  +      +P L   L L+ N +   +    F 
Sbjct: 144 YFSNLTNLEHLDLSSNKIQSIYCTDLRVLH----QMPLLNLSLDLSLNPM-NFIQPGAFK 198

Query: 227 MSALKEISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTI------PSSITNSSKLS 280
              L +++L NN  S ++       L  +E   L +  F           S++     L+
Sbjct: 199 EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLT 258

Query: 281 DLEL---GENLFSGFIPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLT---------- 327
             E      + +   I +    L N+   ++    +     + S+               
Sbjct: 259 IEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNFGWQHLELVNCKFG 317

Query: 328 -----NCKKLKVLIVTGNPLDGILPKSIGNFS--LSLETILMANCSIS--GNIPQVVGNL 378
                  K LK L  T N        +  +     SLE + ++   +S  G   Q     
Sbjct: 318 QFPTLKLKSLKRLTFTSNKG-----GNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGT 372

Query: 379 SNLLVLELGGNNLTGPIPVTFSQLQTLQAFDLTRNKLAG-PITDELCHLARLHSLVLQGN 437
           ++L  L+L  N +   +   F  L+ L+  D   + L           L  L  L +   
Sbjct: 373 TSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT 431

Query: 438 KFSGSIPSCLGNLTSVRVLYLGLNIFTSVLSSTIW-NLKDILFIDVSSNFLDGPLSLDIG 496
               +       L+S+ VL +  N F       I+  L+++ F+D+S   L+        
Sbjct: 432 HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN 491

Query: 497 NLKVVIGLDFSRNNLS 512
           +L  +  L+ + N L 
Sbjct: 492 SLSSLQVLNMASNQLK 507

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  142 bits (359), Expect = 1e-35
 Identities = 83/449 (18%), Positives = 163/449 (36%), Gaps = 45/449 (10%)

Query: 57  LNISSFNLQGTITPQLGNLSSLQTLDLSHNKL-SGNIPSSIFNMHTLKLLDFSDNQLFGS 115
           L     NL       +G+L +L+ L+++HN + S  +P    N+  L+ LD S N++   
Sbjct: 105 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164

Query: 116 LSSFIFNMSSMT----TIDLSINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAI 171
             + +  +  M     ++DLS+N ++         I     K  +L +L L  N  S  +
Sbjct: 165 YCTDLRVLHQMPLLNLSLDLSLNPMN--------FIQPGAFKEIRLHKLTLRNNFDSLNV 216

Query: 172 PKE-IGNLTKLKEI------------ISTITNSTVCEIPREIGNLPYLARLALATNNLVG 218
            K  I  L  L+              +     S +  +         LA L    ++++ 
Sbjct: 217 MKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIID 276

Query: 219 VVPVTIFNMSALKEISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSITNSSK 278
           +       ++ +   SL++ ++        +    ++E +N     F      S      
Sbjct: 277 L----FNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKS------ 326

Query: 279 LSDLELGENLFSGFIPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVT 338
           L  L    N           +L +LEF +++ N L+            T+   LK L ++
Sbjct: 327 LKRLTFTSNKGGNAFSEV--DLPSLEFLDLSRNGLSFKGCCSQSDFGTTS---LKYLDLS 381

Query: 339 GNPLDGILPKSIGNFSLSLETILMANCSISGNIPQVV-GNLSNLLVLELGGNNLTGPIPV 397
            N +  +   +       LE +   + ++       V  +L NL+ L++   +       
Sbjct: 382 FNGVITM-SSNFLGLE-QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG 439

Query: 398 TFSQLQTLQAFDLTRNKLAGPITDE-LCHLARLHSLVLQGNKFSGSIPSCLGNLTSVRVL 456
            F+ L +L+   +  N        +    L  L  L L   +     P+   +L+S++VL
Sbjct: 440 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 499

Query: 457 YLGLNIFTSVLSSTIWNLKDILFIDVSSN 485
            +  N   SV       L  +  I + +N
Sbjct: 500 NMASNQLKSVPDGIFDRLTSLQKIWLHTN 528

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  122 bits (307), Expect = 4e-29
 Identities = 68/367 (18%), Positives = 129/367 (35%), Gaps = 26/367 (7%)

Query: 57  LNISSFNLQGTITPQLGNLSSLQTLDLSHNKLSGNIPSSIFN------MHTLKLLDFSDN 110
           L++S   +   I P       L  L L +N  S N+  +         +H L L +F + 
Sbjct: 182 LDLSLNPMN-FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE 240

Query: 111 QLFGSLSSFIFNMSSMTTIDLSINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGA 170
                          +  + +   RL+  L   +  I    +    +   +L    +   
Sbjct: 241 GNLEKFDKSALE--GLCNLTIEEFRLAY-LDYYLDDIIDLFNCLTNVSSFSLVSVTIER- 296

Query: 171 IPKEIGNLTKLKEIISTITNSTVCEIPREIGNLPYLARLALATNNLVGVVPVTIFNMSAL 230
           +     N    + +   + N    + P     L  L RL   +N        +  ++ +L
Sbjct: 297 VKDFSYN-FGWQHL--ELVNCKFGQFPT--LKLKSLKRLTFTSNKGGNAF--SEVDLPSL 349

Query: 231 KEISLLNNSLSG-SLPSRIDLSLPNVETLNLGINSFSGTIPSSITNSSKLSDLELGENLF 289
           + + L  N LS     S+ D    +++ L+L  N    T+ S+     +L  L+   +  
Sbjct: 350 EFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNL 408

Query: 290 SGFIPNTI-GNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGILPK 348
                 ++  +LRNL + +I+  +   +   +           L+VL + GN        
Sbjct: 409 KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI-----FNGLSSLEVLKMAGNSFQENFLP 463

Query: 349 SIGNFSLSLETILMANCSISGNIPQVVGNLSNLLVLELGGNNLTGPIPVTFSQLQTLQAF 408
            I     +L  + ++ C +    P    +LS+L VL +  N L       F +L +LQ  
Sbjct: 464 DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKI 523

Query: 409 DLTRNKL 415
            L  N  
Sbjct: 524 WLHTNPW 530

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 99.0 bits (247), Expect = 1e-21
 Identities = 53/294 (18%), Positives = 103/294 (35%), Gaps = 31/294 (10%)

Query: 57  LNISSFNLQGTITPQL-GNLSSLQTLDLSHNKLSGNIPSSIF--NMHTLKLLDFSDNQLF 113
             ++  +        L   L+++ +  L    +   +    +      L+L++    Q  
Sbjct: 262 FRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNFGWQHLELVNCKFGQFP 320

Query: 114 GSLSSFIFNMSSMTTIDLSINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLS--GAI 171
                    + S+  +  + N+              +      LE L+L  N LS  G  
Sbjct: 321 T------LKLKSLKRLTFTSNKGGN---------AFSEVDLPSLEFLDLSRNGLSFKGCC 365

Query: 172 PKEIGNLTKLKEIISTITNSTVCEIPREIGNLPYLARLALATNNLVGVVPVTIF-NMSAL 230
            +     T LK +   ++ + V  +      L  L  L    +NL  +   ++F ++  L
Sbjct: 366 SQSDFGTTSLKYL--DLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL 423

Query: 231 KEISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSI-TNSSKLSDLELGENLF 289
             + + +        + I   L ++E L +  NSF       I T    L+ L+L +   
Sbjct: 424 IYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 482

Query: 290 SGFIPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLD 343
               P    +L +L+  N+A N L S          LT+   L+ + +  NP D
Sbjct: 483 EQLSPTAFNSLSSLQVLNMASNQLKS--VPDGIFDRLTS---LQKIWLHTNPWD 531

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 95.6 bits (238), Expect = 1e-20
 Identities = 53/278 (19%), Positives = 101/278 (36%), Gaps = 23/278 (8%)

Query: 63  NLQGTITPQLGNLSSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQLFGSLSSFIFN 122
           ++              Q L+L + K     P+    + +LK L F+ N+  G+  S + +
Sbjct: 291 SVTIERVKDFSYNFGWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKG-GNAFSEV-D 345

Query: 123 MSSMTTIDLSINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEIGNLTKLK 182
           + S+  +DLS N LS            +      L+ L+L FN +   +      L +L+
Sbjct: 346 LPSLEFLDLSRNGLS-----FKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLE 399

Query: 183 EI------ISTITNSTVCEIPREIGNLPYLARLALATNNLVGVVPVTIFNMSALKEISLL 236
            +      +  ++  +V        +L  L  L ++  +           +S+L+ + + 
Sbjct: 400 HLDFQHSNLKQMSEFSV------FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMA 453

Query: 237 NNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSITNSSKLSDLELGENLFSGFIPNT 296
            NS   +    I   L N+  L+L         P++  + S L  L +  N         
Sbjct: 454 GNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGI 513

Query: 297 IGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKV 334
              L +L+   +  N    S P + +LS   N    K 
Sbjct: 514 FDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKE 551

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 92.9 bits (231), Expect = 9e-20
 Identities = 55/291 (18%), Positives = 97/291 (33%), Gaps = 26/291 (8%)

Query: 237 NNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSITNSSKLSDLELGENLFSGFIPNT 296
             +    +P  +     + + L+L  N        S  +  +L  L+L            
Sbjct: 16  ELNFY-KIPDNL---PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGA 71

Query: 297 IGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGILPKSIGNFSLS 356
             +L +L    +  N + S           +    L+ L+     L  +    IG+   +
Sbjct: 72  YQSLSHLSTLILTGNPIQSLALGA-----FSGLSSLQKLVAVETNLASLENFPIGHLK-T 125

Query: 357 LETILMANCSI-SGNIPQVVGNLSNLLVLELGGNNLTGPIPVTFSQLQTLQAF----DLT 411
           L+ + +A+  I S  +P+   NL+NL  L+L  N +          L  +       DL+
Sbjct: 126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 185

Query: 412 RNKLAGPITDELCHLARLHSLVLQGNKFSGSIPS-CLGNLTSVRVLYLGLNIF------T 464
            N +   I        RLH L L+ N  S ++   C+  L  + V  L L  F       
Sbjct: 186 LNPMNF-IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLE 244

Query: 465 SVLSSTIWNLKDILFIDVSSNFLDGPLSLDIG---NLKVVIGLDFSRNNLS 512
               S +  L ++   +    +LD  L   I     L  V         + 
Sbjct: 245 KFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE 295

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 90.5 bits (225), Expect = 6e-19
 Identities = 40/221 (18%), Positives = 82/221 (37%), Gaps = 36/221 (16%)

Query: 53  RVIGLNISSFNLQGTITPQLGNLSSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQL 112
             + L+ +  + +G  +      +SL+ LDLS N +   + S+   +  L+ LDF  + L
Sbjct: 350 EFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNL 408

Query: 113 FGSLSSFIF-NMSSMTTIDLSINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAI 171
                  +F ++ ++  +D+S                   +    LE L +  N+     
Sbjct: 409 KQMSEFSVFLSLRNLIYLDISHTHTR-VAF------NGIFNGLSSLEVLKMAGNSFQENF 461

Query: 172 PKEI-GNLTKLKEIISTITNSTVCEIPREIGNLPYLARLALATNNLVGVVPVTIFNMSAL 230
             +I   L  L                           L L+   L  + P    ++S+L
Sbjct: 462 LPDIFTELRNLTF-------------------------LDLSQCQLEQLSPTAFNSLSSL 496

Query: 231 KEISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPS 271
           + +++ +N L  S+P  I   L +++ + L  N +  + P 
Sbjct: 497 QVLNMASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  152 bits (385), Expect = 4e-39
 Identities = 96/482 (19%), Positives = 167/482 (34%), Gaps = 48/482 (9%)

Query: 73  GNLSSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQLFGSLSSFIF-NMSSMTTIDL 131
           G  +++++LDLS NK++      +     L++L    +++  ++    F ++ S+  +DL
Sbjct: 23  GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRI-NTIEGDAFYSLGSLEHLDL 81

Query: 132 SINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSG-AIPKEIGNLTKLKEIISTITN 190
           S N LS  L        S       L+ LNL  N      +     NLT L+ +      
Sbjct: 82  SDNHLS-SLS------SSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVE 134

Query: 191 STVCEIPREIGNLPYLARLALATNNLVGVVPVTIFNMSALKEISLLNNSLSGSLPSRIDL 250
           +       +   L  L  L +   +L      ++ ++  +  ++L  +  +  L      
Sbjct: 135 TFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFAD 193

Query: 251 SLPNVETLNLGINSFSGTIPSSITNSSKLSDLELGENLFSGF----------IPNTIGNL 300
            L +V  L L   + +    S +      S ++      S            +   I  L
Sbjct: 194 ILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILEL 253

Query: 301 RNLEFGNIADNYLTSSTP-ELSFLSSLTN--CKKLKVLIVTGNPLDGILPKSIGNFSLSL 357
             +EF +   N L    P E   +S L       ++ L +    L   L          +
Sbjct: 254 SEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLE-KV 312

Query: 358 ETILMANCSISGNIPQVVGNLSNLLVLELGGNNLTGPIPVT---FSQLQTLQAFDLTRNK 414
           + I + N  +         +L +L  L+L  N +               +LQ   L++N 
Sbjct: 313 KRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNH 372

Query: 415 LA--GPITDELCHLARLHSLVLQGNKFSGSIPSCLGNLTSVRVLYLGLNIFTSVLSSTIW 472
           L       + L  L  L SL +  N F   +P        +R L L       V +    
Sbjct: 373 LRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQ 431

Query: 473 NLKDILFIDVSSNFLDGPLSLDIGNLKVVIGLDFSRNNLSGDIPITIGEGEIPRGGPFAN 532
            L+    +DVS+N LD   SL +  L+    L  SRN L            +P    F  
Sbjct: 432 TLE---VLDVSNNNLDS-FSLFLPRLQE---LYISRNKLK----------TLPDASLFPV 474

Query: 533 LT 534
           L 
Sbjct: 475 LL 476

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  134 bits (338), Expect = 4e-33
 Identities = 75/457 (16%), Positives = 150/457 (32%), Gaps = 54/457 (11%)

Query: 74  NLSSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQLFGSLSSFIFNMSSMTTIDLSI 133
           +  +    D      + +IPS +     +K LD S N++       +   +++  + L  
Sbjct: 3   SCDASGVCDGRSRSFT-SIPSGLTA--AMKSLDLSFNKITYIGHGDLRACANLQVLILKS 59

Query: 134 NRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEIGNLTKLKEIISTITNSTV 193
           +R++  +                LE L+L  N+LS       G L+ LK           
Sbjct: 60  SRIN-TIE------GDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKY---------- 102

Query: 194 CEIPREIGNLPYLARLALATNNLVGVVPVTIF-NMSALKEISLLNNSLSGSLPSRIDLSL 252
                          L L  N    +   ++F N++ L+ + + N      +       L
Sbjct: 103 ---------------LNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGL 147

Query: 253 PNVETLNLGINSFSGTIPSSITNSSKLSDLELGENLFSGFIPNTIGNLRNLEFGNIADNY 312
            ++  L +   S       S+ +   +  L L  +  +  +      L ++ +  + D  
Sbjct: 148 TSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTN 207

Query: 313 LTSSTPE-LSFLSSLTNCKKLKVLIVTGNPLDGILPKSIGNFSLSLETILMANCSISG-- 369
           L       L      +  KKL                 +  + L L  +   +C+++G  
Sbjct: 208 LARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLG 267

Query: 370 ----NIPQVVGNLS-----NLLVLELGGNNLTGPIPVTFSQLQTLQAFDLTRNKLAGPIT 420
               +   VV  L       +  L +    L   +   +S L+ ++   +  +K+     
Sbjct: 268 DFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPC 327

Query: 421 DELCHLARLHSLVLQGNKFSGSI---PSCLGNLTSVRVLYLGLNIFTSV--LSSTIWNLK 475
               HL  L  L L  N          +C G   S++ L L  N   S+      +  LK
Sbjct: 328 SFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLK 387

Query: 476 DILFIDVSSNFLDGPLSLDIGNLKVVIGLDFSRNNLS 512
           ++  +D+S N    P+       + +  L+ S   + 
Sbjct: 388 NLTSLDISRNTF-HPMPDSCQWPEKMRFLNLSSTGIR 423

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  122 bits (309), Expect = 2e-29
 Identities = 67/432 (15%), Positives = 140/432 (32%), Gaps = 55/432 (12%)

Query: 57  LNISSFNLQGTITPQ-LGNLSSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQLFGS 115
           L I +      I       L+SL  L++    L      S+ ++  +  L    ++    
Sbjct: 128 LRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFL 187

Query: 116 LSSFIFNMSSMTTIDLSINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEI 175
           L  F   +SS+  ++L    L+     +   +    S  K+L        + S       
Sbjct: 188 LEIFADILSSVRYLELRDTNLA-RFQFSPLPVDEVSSPMKKLAFRGSVLTDES------- 239

Query: 176 GNLTKLKEIISTITNSTVCEIPREIGNLPYLARLALATNNLVGVVPVTIFNMSALKEISL 235
                                      L  L R  L  + +        F+   L  +  
Sbjct: 240 ------------------------FNELLKLLRYILELSEVE-------FDDCTLNGLGD 268

Query: 236 LNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSITNSSKLSDLELGENLFSGFIPN 295
            N S S  +     +    +  L++        + +  +   K+  + +  +       +
Sbjct: 269 FNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCS 328

Query: 296 TIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGILPKSIGNFS- 354
              +L++LEF ++++N +     + S  +       L+ L+++ N L   + K+      
Sbjct: 329 FSQHLKSLEFLDLSENLMVEEYLKNS--ACKGAWPSLQTLVLSQNHLR-SMQKTGEILLT 385

Query: 355 -LSLETILMANCSISGNIPQVVGNLSNLLVLELGGNNLTGPIPVTFSQLQTLQAFDLTRN 413
             +L ++ ++  +    +P        +  L L    +     V     QTL+  D++ N
Sbjct: 386 LKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRV---VKTCIPQTLEVLDVSNN 441

Query: 414 KLAGPITDELCHLARLHSLVLQGNKFSGSIPSCLGNLTSVRVLYLGLNIFTSVLSSTIWN 473
            L          L RL  L +  NK   ++P        + V+ +  N   SV       
Sbjct: 442 NL----DSFSLFLPRLQELYISRNKLK-TLPDA-SLFPVLLVMKISRNQLKSVPDGIFDR 495

Query: 474 LKDILFIDVSSN 485
           L  +  I + +N
Sbjct: 496 LTSLQKIWLHTN 507

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 97.5 bits (243), Expect = 3e-21
 Identities = 51/264 (19%), Positives = 101/264 (38%), Gaps = 20/264 (7%)

Query: 74  NLSSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQLFGSLSSFIFNMSSMTTIDLSI 133
              +++ L +    L  ++ +    +  +K +   ++++F    SF  ++ S+  +DLS 
Sbjct: 284 ETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSE 343

Query: 134 NRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEIG---NLTKLKEIISTITN 190
           N +  E   N     +       L+ L L  N+L  ++ K       L  L  +   I+ 
Sbjct: 344 NLMVEEYLKN----SACKGAWPSLQTLVLSQNHLR-SMQKTGEILLTLKNLTSLD--ISR 396

Query: 191 STVCEIPREIGNLPYLARLALATNNLVGVVPVTIFNMSALKEISLLNNSLSGSLPSRIDL 250
           +T   +P        +  L L++  +  VV   I     L+ + + NN+L         L
Sbjct: 397 NTFHPMPDSCQWPEKMRFLNLSSTGIR-VVKTCIP--QTLEVLDVSNNNL-----DSFSL 448

Query: 251 SLPNVETLNLGINSFSGTIPSSITNSSKLSDLELGENLFSGFIPNTIGNLRNLEFGNIAD 310
            LP ++ L +  N    T+P + +    L  +++  N            L +L+   +  
Sbjct: 449 FLPRLQELYISRNKLK-TLPDA-SLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHT 506

Query: 311 NYLTSSTPELSFLSSLTNCKKLKV 334
           N    S P + +LS   N    K 
Sbjct: 507 NPWDCSCPRIDYLSRWLNKNSQKE 530

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 89.4 bits (222), Expect = 1e-18
 Identities = 52/291 (17%), Positives = 110/291 (37%), Gaps = 23/291 (7%)

Query: 237 NNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSITNSSKLSDLELGENLFSGFIPNT 296
           + S + S+PS +      +++L+L  N  +      +   + L  L L  +  +    + 
Sbjct: 14  SRSFT-SIPSGL---TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDA 69

Query: 297 IGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGILPKSIGNFSLS 356
             +L +LE  +++DN+L+S +              LK L + GNP   +   S+     +
Sbjct: 70  FYSLGSLEHLDLSDNHLSSLSSSW-----FGPLSSLKYLNLMGNPYQTLGVTSLFPNLTN 124

Query: 357 LETILMANCSISGNIPQVV-GNLSNLLVLELGGNNLTGPIPVTFSQLQTLQAFDLTRNKL 415
           L+T+ + N      I ++    L++L  LE+   +L      +   ++ +    L  ++ 
Sbjct: 125 LQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSES 184

Query: 416 AGPITDELCHLARLHSLVLQGNK---FSGSIPSCLGNLTSVRVLYLGLNIFTSV------ 466
           A  +      L+ +  L L+      F  S        + ++ L    ++ T        
Sbjct: 185 AFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELL 244

Query: 467 -LSSTIWNLKDILFIDVSSN---FLDGPLSLDIGNLKVVIGLDFSRNNLSG 513
            L   I  L ++ F D + N     +   S  +  L  V  +   R ++  
Sbjct: 245 KLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQ 295

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 87.5 bits (217), Expect = 5e-18
 Identities = 51/311 (16%), Positives = 103/311 (33%), Gaps = 45/311 (14%)

Query: 50  NSHRVIGLNISSFNLQGTITPQLGNLSSLQTLDLSHNKLSGNIPSSIFNMH--------T 101
            + R   L   SFN    +   +  LS ++  D + N L    PS    +         T
Sbjct: 228 LAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVT 287

Query: 102 LKLLDFSDNQLFGSLSSFIFNMSSMTTIDLSINRLSGELPANICKIPSTLSKCKQLEELN 161
           ++ L      LF  LS+    +  +  I +  +++   +P +           K LE L+
Sbjct: 288 IRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFS------QHLKSLEFLD 340

Query: 162 LGFNNLSGAIPKE---IGNLTKLKEI------ISTITNSTVCEIPREIGNLPYLARLALA 212
           L  N +     K     G    L+ +      + ++  +        +  L  L  L ++
Sbjct: 341 LSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKT-----GEILLTLKNLTSLDIS 395

Query: 213 TNNLVGVVPVTIFNMSALKEISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSS 272
            N     +P +      ++ ++L +  +   + + I      +E L++  N+   +    
Sbjct: 396 RNTF-HPMPDSCQWPEKMRFLNLSSTGIR-VVKTCI---PQTLEVLDVSNNNLD-SFSLF 449

Query: 273 ITNSSKLSDLELGENLFSGFIPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKL 332
           +     L +L +  N        +      L    I+ N L S                L
Sbjct: 450 LPR---LQELYISRNKLKTLPDAS--LFPVLLVMKISRNQLKSVPD-----GIFDRLTSL 499

Query: 333 KVLIVTGNPLD 343
           + + +  NP D
Sbjct: 500 QKIWLHTNPWD 510

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A* Length = 321

 Score =  146 bits (370), Expect = 6e-39
 Identities = 62/227 (27%), Positives = 92/227 (40%), Gaps = 60/227 (26%)

Query: 600 SRTGPSNDGINSPQAIRRFSYHELLRATDRFSENNLIGIG-----------NGMEVAVKV 648
           S     +     P    R    +L  AT+ F    LIG G           +G +VA+K 
Sbjct: 11  SINDALSSSYLVPFESYRVPLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKR 70

Query: 649 FHQQYERALKSFEDECEVRKRIRHRNLVKII-----------------SSSLEY------ 685
              +  + ++ FE E E     RH +LV +I                 + +L+       
Sbjct: 71  RTPESSQGIEEFETEIETLSFCRHPHLVSLIGFCDERNEMILIYKYMENGNLKRHLYGSD 130

Query: 686 ---------------------LHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLS 724
                                LH+ H+  IIH D+K  N+LLDE+ V  I+DFGI+K  +
Sbjct: 131 LPTMSMSWEQRLEICIGAARGLHYLHTRAIIHRDVKSINILLDENFVPKITDFGISKKGT 190

Query: 725 GEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFG-----IISG 766
             DQ    T    T+GY+ PEY  KGR++ + DV SFG     ++  
Sbjct: 191 ELDQTHLSTVVKGTLGYIDPEYFIKGRLTEKSDVYSFGVVLFEVLCA 237

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  153 bits (389), Expect = 1e-38
 Identities = 87/497 (17%), Positives = 165/497 (33%), Gaps = 83/497 (16%)

Query: 74  NLSSLQTLDLSHNKLSGNIPSSIF-NMHTLKLLDFSDNQLFGSLSSFIF-NMSSMTTIDL 131
            L++ + L LS N +   + +S F  +  L+LL+        ++    F N+ ++  +DL
Sbjct: 22  VLNTTERLLLSFNYIR-TVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDL 80

Query: 132 SINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAI--PKEIGNLTKLKEI----- 184
             +++   L       P        L EL L F  LS A+       NL  L  +     
Sbjct: 81  GSSKIY-FLH------PDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKN 133

Query: 185 -ISTITNSTVCEIPREIGNLPYLARLALATNNLVGVVPVTI--FNMSALKEISLLNNSLS 241
            I ++       +    G L  L  +  ++N +  V    +       L   SL  NSL 
Sbjct: 134 QIRSL------YLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLY 187

Query: 242 GSLPSRIDLSLPNVETLNLGI-----------------NSFSGTIPSSITNSSKLSDLEL 284
             +       +     + L I                 N+ S +   S+  +  +     
Sbjct: 188 SRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGF 247

Query: 285 GENLFSGFIPNTIGNLR--NLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPL 342
           G +       NT   L   ++   +++  ++ S              K LKVL +  N +
Sbjct: 248 GFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNS-----RVFETLKDLKVLNLAYNKI 302

Query: 343 DGILPKSIGNFSLSLETILMANCSISGNIPQVVGNLSNLLVLELGGNNLTGPIPVTFSQL 402
           + I  ++      +L+ + ++   +          L  +  ++L  N++      TF  L
Sbjct: 303 NKIADEAFYGLD-NLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFL 361

Query: 403 QTLQAFDLTRNKLAGPITDELCHLARLHSLVLQGNKFSG--------------------- 441
           + LQ  DL  N L       +  +  +  + L GNK                        
Sbjct: 362 EKLQTLDLRDNALT-----TIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENL 416

Query: 442 SIPSCLGNLTSVRVLYLGLNIFTSVLSS-TIWNLKDILFIDVSSNFLDGPLSLDI----- 495
            I   L  +  +++L L  N F+S     T      +  + +  N L      ++     
Sbjct: 417 DILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVF 476

Query: 496 GNLKVVIGLDFSRNNLS 512
             L  +  L  + N L+
Sbjct: 477 EGLSHLQVLYLNHNYLN 493

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  149 bits (377), Expect = 3e-37
 Identities = 98/511 (19%), Positives = 183/511 (35%), Gaps = 73/511 (14%)

Query: 57  LNISSFNLQGTITPQ--LGNLSSLQTLDLSHNKLSGNIPSSIF-NMHTLKLLDFSDNQLF 113
           L +    L   +       NL +L  LDLS N++        F  +++LK +DFS NQ+F
Sbjct: 102 LRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF 161

Query: 114 GSLSSFIFN---MSSMTTIDLSINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGA 170
             +           +++   L+ N L   +  +  K  +   +   LE L++  N  +  
Sbjct: 162 -LVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPF-RNMVLEILDVSGNGWTVD 219

Query: 171 IPKEIGNLTKLKEIISTITNSTVCEIPREIGNL-------------PYLARLALATNNLV 217
           I     N     +  S I    +        N+               +  L L+   + 
Sbjct: 220 ITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVF 279

Query: 218 GVVPVTIFNMSALKEISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSITNSS 277
            +       +  LK ++L  N ++  +       L N++ LNL  N       S+     
Sbjct: 280 SLNSRVFETLKDLKVLNLAYNKIN-KIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLP 338

Query: 278 KLSDLELGENLFSGFIPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIV 337
           K++ ++L +N  +     T   L  L+  ++ DN LT+          +     +  + +
Sbjct: 339 KVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT----------IHFIPSIPDIFL 388

Query: 338 TGNPLDGILPKSIGNFSLSLETILMANCSISG-NIPQVVGNLSNLLVLELGGNNLTG-PI 395
           +GN L      ++   +L+   I ++   +   +I   +  + +L +L L  N  +    
Sbjct: 389 SGNKL-----VTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSG 443

Query: 396 PVTFSQLQTLQAFDLTRNKLAGPITDELCHLARLHSLVLQGNKFSGSIPSCLGNLTSVRV 455
             T S+  +L+   L  N L      ELC                         L+ ++V
Sbjct: 444 DQTPSENPSLEQLFLGENMLQLAWETELC-------------------WDVFEGLSHLQV 484

Query: 456 LYLGLNIFTSVLSSTIWNLKDILFIDVSSNFLDG-PLSLDIGNLKVVIGLDFSRNNLSGD 514
           LYL  N   S+      +L  +  + ++SN L     +    NL++   LD SRN L   
Sbjct: 485 LYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANLEI---LDISRNQLL-- 539

Query: 515 IPITIGEGEIPRGGPFANLTAKSFMGNELLC 545
                     P    F +L+      N+ +C
Sbjct: 540 ---------APNPDVFVSLSVLDITHNKFIC 561

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  114 bits (286), Expect = 4e-26
 Identities = 85/479 (17%), Positives = 170/479 (35%), Gaps = 53/479 (11%)

Query: 2   LLKSIISQHQQALLALKAHISYDHTNLFARNWTSSTSVCIWIGITCDVNSHRVIGLNISS 61
            +    +   + L       + D T  F+   + S            + +H ++G     
Sbjct: 197 CMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQ-------AFSLILAHHIMGAGFGF 249

Query: 62  FNLQGTITPQLGNL--SSLQTLDLSHNKLSGNIPSSIF-NMHTLKLLDFSDNQLFGSLSS 118
            N++         L  SS++ LDLSH  +  ++ S +F  +  LK+L+ + N++      
Sbjct: 250 HNIKDPDQNTFAGLARSSVRHLDLSHGFVF-SLNSRVFETLKDLKVLNLAYNKINKIADE 308

Query: 119 FIFNMSSMTTIDLSINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEIGNL 178
             + + ++  ++LS N L  EL ++            ++  ++L  N+++    +    L
Sbjct: 309 AFYGLDNLQVLNLSYNLLG-ELYSS------NFYGLPKVAYIDLQKNHIAIIQDQTFKFL 361

Query: 179 TKLKEIISTITNSTVCEIPREIGNLPYLARLALATNNLVGVVPVTIFNMSALKEISLLNN 238
            KL+ +     +     +   I  +P +  + L+ N LV +  + +        I L  N
Sbjct: 362 EKLQTL-----DLRDNAL-TTIHFIPSIPDIFLSGNKLVTLPKINLT----ANLIHLSEN 411

Query: 239 SLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSI-TNSSKLSDLELGENLF-----SGF 292
            L         L +P+++ L L  N FS        + +  L  L LGEN+      +  
Sbjct: 412 RLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETEL 471

Query: 293 IPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGILPKSIGN 352
             +    L +L+   +  NYL S  P +      ++   L+ L +  N L  +   S  +
Sbjct: 472 CWDVFEGLSHLQVLYLNHNYLNSLPPGV-----FSHLTALRGLSLNSNRLTVL---SHND 523

Query: 353 FSLSLETILMANCSISGNIPQVVGNLSNLLVLELGGNNLTGPIPVTFSQLQTLQAFDLTR 412
              +LE + ++   +    P V     +L VL++  N               L  F    
Sbjct: 524 LPANLEILDISRNQLLAPNPDV---FVSLSVLDITHNKFICECE--------LSTFINWL 572

Query: 413 NKLAGPITDELCHLARLHSLVLQGNKFSGSIPSCLGNLTSVRVLYLGLNIFTSVLSSTI 471
           N     I      +  ++     G                ++ L   L I  +V  +  
Sbjct: 573 NHTNVTIAGPPADIYCVYPDSFSGVSLFSLSTEGCDEEEVLKSLKFSLFIVCTVTLTLF 631

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  137 bits (347), Expect = 1e-35
 Identities = 59/355 (16%), Positives = 114/355 (32%), Gaps = 38/355 (10%)

Query: 72  LGNLSSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQLFGSLSSFIFNMSSMTTIDL 131
             + S  + L    +         +         D +        +    N ++      
Sbjct: 8   HHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQA----NSNNPQIETR 63

Query: 132 SINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEIGNLTKLKEIISTITNS 191
           +   L       +       +       L L    L    P +   L+ L+ +  TI  +
Sbjct: 64  TGRALK-ATADLLED-----ATQPGRVALELRSVPLP-QFPDQAFRLSHLQHM--TIDAA 114

Query: 192 TVCEIPREIGNLPYLARLALATNNLVGVVPVTIFNMSALKEISLLNNSLSGSLPSRIDLS 251
            + E+P  +     L  L LA N L   +P +I +++ L+E+S+        LP  +   
Sbjct: 115 GLMELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPL--- 170

Query: 252 LPNVETLNLGINSFSGTIPSSITNSSKLSDLELGENLFSGFIPNTIGNLRNLEFGNIADN 311
                         S            L  L L        +P +I NL+NL+   I ++
Sbjct: 171 -------------ASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNS 216

Query: 312 YLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGILPKSIGNFSLSLETILMANCSISGNI 371
            L++         ++ +  KL+ L + G       P   G  +  L+ +++ +CS    +
Sbjct: 217 PLSA------LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRA-PLKRLILKDCSNLLTL 269

Query: 372 PQVVGNLSNLLVLELGGNNLTGPIPVTFSQLQTLQAFDLTRNKLAGPITDELCHL 426
           P  +  L+ L  L+L G      +P   +QL       +  +  A          
Sbjct: 270 PLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRPVAR 324

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  130 bits (330), Expect = 2e-33
 Identities = 43/273 (15%), Positives = 92/273 (33%), Gaps = 21/273 (7%)

Query: 57  LNISSFNLQGTITPQLGNLSS--LQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQLFG 114
           +   +          L + +      L+L    L    P   F +  L+ +      L  
Sbjct: 60  IETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGL-M 117

Query: 115 SLSSFIFNMSSMTTIDLSINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKE 174
            L   +   + + T+ L+ N L          +P++++   +L EL++        +P+ 
Sbjct: 118 ELPDTMQQFAGLETLTLARNPLR--------ALPASIASLNRLRELSIRACPELTELPEP 169

Query: 175 IGNLTKLKEIIS-------TITNSTVCEIPREIGNLPYLARLALATNNLVGVVPVTIFNM 227
           + +     E           +  + +  +P  I NL  L  L +  + L  +    I ++
Sbjct: 170 LASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSAL-GPAIHHL 228

Query: 228 SALKEISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSITNSSKLSDLELGEN 287
             L+E+ L   +   + P         ++ L L   S   T+P  I   ++L  L+L   
Sbjct: 229 PKLEELDLRGCTALRNYPPIF-GGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGC 287

Query: 288 LFSGFIPNTIGNLRNLEFGNIADNYLTSSTPEL 320
           +    +P+ I  L       +  +         
Sbjct: 288 VNLSRLPSLIAQLPANCIILVPPHLQAQLDQHR 320

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  129 bits (327), Expect = 4e-33
 Identities = 53/344 (15%), Positives = 102/344 (29%), Gaps = 49/344 (14%)

Query: 154 CKQLEELNLGFNNLSGAIPKEIGNLTKLKEIISTITNSTVCEIPREIGNLPYLARLALAT 213
               E L    +         +    +         +           N           
Sbjct: 11  SSGRENLYFQGSTALRPYHDVLSQWQRH-----YNADRNRWHSAWRQANS---------- 55

Query: 214 NNLVGVVPVTIFNMSALKEISLLNNSLSGSLPSRI-DLSLPNVETLNLGINSFSGTIPSS 272
                         +  +  +    +L  +    + D + P    L L         P  
Sbjct: 56  --------------NNPQIETRTGRALK-ATADLLEDATQPGRVALELRSVPLP-QFPDQ 99

Query: 273 ITNSSKLSDLELGENLFSGFIPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKL 332
               S L  + +        +P+T+     LE   +A N L +        +S+ +  +L
Sbjct: 100 AFRLSHLQHMTIDAAGLME-LPDTMQQFAGLETLTLARNPLRA------LPASIASLNRL 152

Query: 333 KVLIVTGNPLDGILPKSIGNFSL--------SLETILMANCSISGNIPQVVGNLSNLLVL 384
           + L +   P    LP+ + +           +L+++ +    I  ++P  + NL NL  L
Sbjct: 153 RELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSL 211

Query: 385 ELGGNNLTGPIPVTFSQLQTLQAFDLTRNKLAGPITDELCHLARLHSLVLQGNKFSGSIP 444
           ++  + L+  +      L  L+  DL                A L  L+L+      ++P
Sbjct: 212 KIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLP 270

Query: 445 SCLGNLTSVRVLYLGLNIFTSVLSSTIWNLKDILFIDVSSNFLD 488
             +  LT +  L L   +  S L S I  L     I V  +   
Sbjct: 271 LDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  129 bits (326), Expect = 6e-33
 Identities = 49/337 (14%), Positives = 103/337 (30%), Gaps = 40/337 (11%)

Query: 57  LNISSFNLQGTITPQLGNLSSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQLFGSL 116
           L              L         D +    +        N +  ++   +   L  + 
Sbjct: 17  LYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQA----NSNNPQIETRTGRALKATA 72

Query: 117 SSF-IFNMSSMTTIDLSINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEI 175
                        ++L    L         + P    +   L+ + +    L   +P  +
Sbjct: 73  DLLEDATQPGRVALELRSVPLP--------QFPDQAFRLSHLQHMTIDAAGLM-ELPDTM 123

Query: 176 GNLTKLKEIISTITNSTVCEIPREIGNLPYLARLALATNNLVGVVPVTIFNMSALKEISL 235
                L+ +  T+  + +  +P  I +L  L  L++     +  +P  + +  A  E   
Sbjct: 124 QQFAGLETL--TLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQ- 180

Query: 236 LNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSITNSSKLSDLELGENLFSGFIPN 295
                           L N+++L L       ++P+SI N   L  L++  +  S  +  
Sbjct: 181 ---------------GLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGP 223

Query: 296 TIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGILPKSIGNFSL 355
            I +L  LE  ++       + P             LK LI+        LP  I   + 
Sbjct: 224 AIHHLPKLEELDLRGCTALRNYPP-----IFGGRAPLKRLILKDCSNLLTLPLDIHRLT- 277

Query: 356 SLETILMANCSISGNIPQVVGNLSNLLVLELGGNNLT 392
            LE + +  C     +P ++  L    ++ +  +   
Sbjct: 278 QLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  128 bits (325), Expect = 8e-33
 Identities = 56/358 (15%), Positives = 114/358 (31%), Gaps = 42/358 (11%)

Query: 113 FGSLSSFIFNMSSMTTIDLSINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIP 172
            GS      + S    +    +         +      LS+ ++    +    +      
Sbjct: 1   MGSSHHHHHHSSGRENLYFQGST-------ALRPYHDVLSQWQRHYNADRNRWHS----A 49

Query: 173 KEIGNLTKLKEIISTITNSTVCEIPREIGNL--PYLARLALATNNLVGVVPVTIFNMSAL 230
               N    +    T            + +   P    L L +  L    P   F +S L
Sbjct: 50  WRQANSNNPQIETRTGRALK--ATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHL 106

Query: 231 KEISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSITNSSKLSDLELGENLFS 290
           + +++    L   LP  +      +ETL L  N     +P+SI + ++L +L +      
Sbjct: 107 QHMTIDAAGLM-ELPDTMQ-QFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPEL 163

Query: 291 GFIPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGILPKSI 350
             +P  + +                                L+ L +    +   LP SI
Sbjct: 164 TELPEPLAS--------------------TDASGEHQGLVNLQSLRLEWTGIRS-LPASI 202

Query: 351 GNFSLSLETILMANCSISGNIPQVVGNLSNLLVLELGGNNLTGPIPVTFSQLQTLQAFDL 410
            N   +L+++ + N  +S  +   + +L  L  L+L G       P  F     L+   L
Sbjct: 203 ANLQ-NLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLIL 260

Query: 411 TRNKLAGPITDELCHLARLHSLVLQGNKFSGSIPSCLGNLTSVRVLYLGLNIFTSVLS 468
                   +  ++  L +L  L L+G      +PS +  L +  ++ +  ++   +  
Sbjct: 261 KDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQ 318

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 95.4 bits (238), Expect = 2e-21
 Identities = 42/259 (16%), Positives = 84/259 (32%), Gaps = 25/259 (9%)

Query: 272 SITNSSKLSDLELGENLFSGFIPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKK 331
              +SS   +L    +       + +   +     +                    N   
Sbjct: 7   HHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRN---------RWHSAWRQANSNN 57

Query: 332 LKVLIVTGNPLDGILPKSIGNFSL-SLETILMANCSISGNIPQVVGNLSNLLVLELGGNN 390
            ++   TG  L       + + +      + + +  +    P     LS+L  + +    
Sbjct: 58  PQIETRTGRAL-KATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAG 115

Query: 391 LTGPIPVTFSQLQTLQAFDLTRNKLAGPITDELCHLARLHSLVLQGNKFSGSIPSCLGN- 449
           L   +P T  Q   L+   L RN L   +   +  L RL  L ++       +P  L + 
Sbjct: 116 LME-LPDTMQQFAGLETLTLARNPLRA-LPASIASLNRLRELSIRACPELTELPEPLAST 173

Query: 450 --------LTSVRVLYLGLNIFTSVLSSTIWNLKDILFIDVSSNFLDGPLSLDIGNLKVV 501
                   L +++ L L      S L ++I NL+++  + + ++ L   L   I +L  +
Sbjct: 174 DASGEHQGLVNLQSLRLEWTGIRS-LPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKL 231

Query: 502 IGLDFSRNNLSGDIPITIG 520
             LD        + P   G
Sbjct: 232 EELDLRGCTALRNYPPIFG 250

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 63.0 bits (154), Expect = 1e-10
 Identities = 22/181 (12%), Positives = 46/181 (25%), Gaps = 9/181 (4%)

Query: 356 SLETILMANCSISGNIPQVVGNLSNLLVLELGGNNLTGPIPVTFSQLQTLQAFDLTRNKL 415
             E +     +       V+         +    +         +     Q    T   L
Sbjct: 13  GRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHS----AWRQANSNNPQIETRTGRAL 68

Query: 416 -AGPITDELCHLARLHSLVLQGNKFSGSIPSCLGNLTSVRVLYLGLNIFTSVLSSTIWNL 474
            A     E        +L L+        P     L+ ++ + +        L  T+   
Sbjct: 69  KATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLME-LPDTMQQF 126

Query: 475 KDILFIDVSSNFLDGPLSLDIGNLKVVIGLDFSRNNLSGDIPITIGEGEIPRG-GPFANL 533
             +  + ++ N L   L   I +L  +  L         ++P  +   +         NL
Sbjct: 127 AGLETLTLARNPLRA-LPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNL 185

Query: 534 T 534
            
Sbjct: 186 Q 186

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  137 bits (348), Expect = 3e-35
 Identities = 69/387 (17%), Positives = 142/387 (36%), Gaps = 63/387 (16%)

Query: 57  LNISSFNLQGTITPQLGNLSSLQTLDLSHNKLSGNIPSSIF-NMHTLKLLDFSDNQLFGS 115
           ++I           +   L++ + +   ++ +   +P+++  +   ++LL+ +D Q+   
Sbjct: 26  VHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQI-EE 83

Query: 116 LSSFIF-NMSSMTTIDLSINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKE 174
           + ++ F    ++  + +  N +   LP      P        L  L L  N+LS      
Sbjct: 84  IDTYAFAYAHTIQKLYMGFNAIR-YLP------PHVFQNVPLLTVLVLERNDLS------ 130

Query: 175 IGNLTKLKEIISTITNSTVCEIPREI-GNLPYLARLALATNNLVGVVPVTIFNMSALKEI 233
                                +PR I  N P L  L+++ NNL  +   T    ++L+ +
Sbjct: 131 --------------------SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNL 170

Query: 234 SLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSITNSSKLSDLELGENLFSGFI 293
            L +N L+  +   +   +P++   N+  N       S++     + +L+   N  +   
Sbjct: 171 QLSSNRLT-HVDLSL---IPSLFHANVSYNLL-----STLAIPIAVEELDASHNSINVVR 221

Query: 294 PNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGILPKSIGNF 353
                 L  L    +  N LT         + L N   L  + ++ N L+ I+       
Sbjct: 222 GPVNVELTIL---KLQHNNLTD-------TAWLLNYPGLVEVDLSYNELEKIMYHPFVKM 271

Query: 354 SLSLETILMANCSISGNIPQVVGNLSNLLVLELGGNNLTGPIPVTFSQLQTLQAFDLTRN 413
              LE + ++N  +   +      +  L VL+L  N+L   +     Q   L+   L  N
Sbjct: 272 Q-RLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHN 328

Query: 414 KLAGPITDELCHLARLHSLVLQGNKFS 440
            +    T +L     L +L L  N + 
Sbjct: 329 SIV---TLKLSTHHTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  112 bits (282), Expect = 9e-27
 Identities = 66/385 (17%), Positives = 140/385 (36%), Gaps = 61/385 (15%)

Query: 105 LDFSDNQLFGSLSSFIFNMSSMTTIDLSINRLSGELPANICKIPSTLSKCKQLEELNLGF 164
           +D     ++         +++   +    + +  +LPA +      L   +Q+E LNL  
Sbjct: 28  IDMQTQDVYFGFEDI--TLNNQKIVTFKNSTMR-KLPAAL------LDSFRQVELLNLND 78

Query: 165 NNLSGAIPKEIGNLTKLKEIISTITNSTVCEIPREI-GNLPYLARLALATNNLVGVVPVT 223
             +                           EI          + +L +  N +  + P  
Sbjct: 79  LQIE--------------------------EIDTYAFAYAHTIQKLYMGFNAIRYLPPHV 112

Query: 224 IFNMSALKEISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSITNSSKLSDLE 283
             N+  L  + L  N LS SLP  I  + P + TL++  N+       +   ++ L +L+
Sbjct: 113 FQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQ 171

Query: 284 LGENLFSGFIPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLD 343
           L  N  +      +  + +L   N++ N L+          +L     ++ L  + N ++
Sbjct: 172 LSSNRLTHV---DLSLIPSLFHANVSYNLLS----------TLAIPIAVEELDASHNSIN 218

Query: 344 GILPKSIGNFSLSLETILMANCSISGNIPQVVGNLSNLLVLELGGNNLTGPIPVTFSQLQ 403
            +        ++ L  + + + +++ +    + N   L+ ++L  N L   +   F ++Q
Sbjct: 219 VVRG----PVNVELTILKLQHNNLT-DTA-WLLNYPGLVEVDLSYNELEKIMYHPFVKMQ 272

Query: 404 TLQAFDLTRNKLAGPITDELCHLARLHSLVLQGNKFSGSIPSCLGNLTSVRVLYLGLNIF 463
            L+   ++ N+L   +      +  L  L L  N     +         +  LYL  N  
Sbjct: 273 RLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSI 330

Query: 464 TSVLSSTIWNLKDILFIDVSSNFLD 488
            ++  ST   LK+   + +S N  D
Sbjct: 331 VTLKLSTHHTLKN---LTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  105 bits (263), Expect = 3e-24
 Identities = 51/375 (13%), Positives = 116/375 (30%), Gaps = 34/375 (9%)

Query: 171 IPKEIGNLTKLKEIISTITNSTVCEIPREIGNLPYLARLALATNNLVGVVPVTIFNMSAL 230
           I   +       ++   +    V     +I  L     +    + +  +    + +   +
Sbjct: 13  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDI-TLNNQKIVTFKNSTMRKLPAALLDSFRQV 71

Query: 231 KEISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSITNSSKLSDLELGENLFS 290
           + ++L +  +   + +        ++ L +G N+     P    N   L+ L L  N  S
Sbjct: 72  ELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS 130

Query: 291 GFIPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGILPKSI 350
                   N   L   ++++N L     +            L+ L ++ N L  +    +
Sbjct: 131 SLPRGIFHNTPKLTTLSMSNNNLERIEDDT-----FQATTSLQNLQLSSNRLTHV---DL 182

Query: 351 GNFSLSLETILMANCSISGNIPQVVGNLSNLLVLELGGNNLTGPIPVTFSQLQTLQAFDL 410
                SL        ++S N+   +     +  L+   N++         +L  L    L
Sbjct: 183 SLIP-SLFHA-----NVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTIL---KL 233

Query: 411 TRNKLAGPITDELCHLARLHSLVLQGNKFSGSIPSCLGNLTSVRVLYLGLNIFTSVLSST 470
             N L       L +   L  + L  N+    +      +  +  LY+  N   + L+  
Sbjct: 234 QHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLY 290

Query: 471 IWNLKDILFIDVSSNFLDGPLSLDIGNLKVVIGLDFSRNNLSGDIPITIGEGEIPRGGPF 530
              +  +  +D+S N L   +  +      +  L    N++   + +             
Sbjct: 291 GQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSIV-TLKL----------STH 338

Query: 531 ANLTAKSFMGNELLC 545
             L   +   N+  C
Sbjct: 339 HTLKNLTLSHNDWDC 353

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 78.5 bits (194), Expect = 1e-15
 Identities = 39/245 (15%), Positives = 88/245 (35%), Gaps = 17/245 (6%)

Query: 268 TIPSSITNSSKLSDLELGENLFSGFIPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLT 327
            I S++       D+ +       +       L N +     ++ +      L     L 
Sbjct: 12  CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAAL-----LD 66

Query: 328 NCKKLKVLIVTGNPLDGILPKSIGNFSLSLETILMANCSISGNIPQVVGNLSNLLVLELG 387
           + +++++L +    ++ I   +      +++ + M   +I    P V  N+  L VL L 
Sbjct: 67  SFRQVELLNLNDLQIEEIDTYAFAYAH-TIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLE 125

Query: 388 GNNLTGPIPVTFSQLQTLQAFDLTRNKLAGPITDELCHLARLHSLVLQGNKFSGSIPSCL 447
            N+L+      F     L    ++ N L     D       L +L L  N+ +  +   L
Sbjct: 126 RNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD--L 182

Query: 448 GNLTSVRVLYLGLNIFTSVLSSTIWNLKDILFIDVSSNFLDGPLSLDIGNLKVVIGLDFS 507
             + S+    +  N+ +++       +++   +D S N ++    +       +  L   
Sbjct: 183 SLIPSLFHANVSYNLLSTLAIPI--AVEE---LDASHNSIN---VVRGPVNVELTILKLQ 234

Query: 508 RNNLS 512
            NNL+
Sbjct: 235 HNNLT 239

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  138 bits (350), Expect = 4e-35
 Identities = 90/469 (19%), Positives = 164/469 (34%), Gaps = 69/469 (14%)

Query: 68  ITPQLGNLSSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQLFGSLSSFIFNMSSMT 127
           I P+  + + LQ      + L+  +P    N+ +      + ++   +          M 
Sbjct: 3   INPRNVSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMA 61

Query: 128 TIDLSINRLSG--ELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEIGNLTKLKEII 185
              L         EL  N   + S       LE L    N+L+  +P+   +L  L    
Sbjct: 62  VSRLRDCLDRQAHELELNNLGLSSLPELPPHLESLVASCNSLT-ELPELPQSLKSLLVD- 119

Query: 186 STITNSTVCEIPREIGNLPYLARLALATNNLVGVVPVTIFNMSALKEISLLNNSLSGSLP 245
               N+ +  +      L YL      +NN +  +P  + N S LK I + NNSL   LP
Sbjct: 120 ----NNNLKALSDLPPLLEYL----GVSNNQLEKLP-ELQNSSFLKIIDVDNNSLK-KLP 169

Query: 246 SRIDLSLPNVETLNLGINSFSGTIPSSITNSSKLSDLELGENLFSGFIPNTIGNLRNLEF 305
                  P++E +  G N         + N   L+ +    N     +P+   +L ++  
Sbjct: 170 D----LPPSLEFIAAGNNQL--EELPELQNLPFLTAIYADNNSLK-KLPDLPLSLESI-- 220

Query: 306 GNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGILPKSIGNFSLSLETILMANC 365
               +N L         L  L N   L  +    N L   LP    +    LE + + + 
Sbjct: 221 -VAGNNILEE-------LPELQNLPFLTTIYADNNLL-KTLPDLPPS----LEALNVRDN 267

Query: 366 SISGNIPQVVGNLSNLLVLELGGNNLTG-------------PIPVTFSQLQTLQAFDLTR 412
            ++ ++P++  +L+ L V E   + L+               I        +L+  +++ 
Sbjct: 268 YLT-DLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSN 326

Query: 413 NKLAGPITDELCHLARLHSLVLQGNKFSGSIPSCLGNLTSVRVLYLGLNIFTSVLSSTIW 472
           NKL   +        RL  L+   N  +  +P    NL   + L++  N           
Sbjct: 327 NKLIE-LPALPP---RLERLIASFNHLA-EVPELPQNL---KQLHVEYNPLRE-FPDIPE 377

Query: 473 NLKDILFIDVSSNFLDGPLSLDIGNLKVVIGLDFSRNNLSGDIPITIGE 521
           +++D   + ++S+  + P      NLK    L    N L  + P     
Sbjct: 378 SVED---LRMNSHLAEVPEL--PQNLKQ---LHVETNPLR-EFPDIPES 417

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  134 bits (340), Expect = 8e-34
 Identities = 88/453 (19%), Positives = 167/453 (36%), Gaps = 74/453 (16%)

Query: 57  LNISSFNLQGTITPQLGNLS-------------SLQTLDLSHNKLSGNIPSSIFNMHTLK 103
              +    +    P  G                    L+L++  LS ++P    +   L+
Sbjct: 39  YYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS-SLPELPPH---LE 94

Query: 104 LLDFSDNQLFGSLSSFIFNMSSMTTIDLSINRLSGELPA---------NICKIPSTLSKC 154
            L  S N L   L     ++ S+   + ++  LS   P           + K+P  L   
Sbjct: 95  SLVASCNSL-TELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPE-LQNS 152

Query: 155 KQLEELNLGFNNLSGAIPKEIGNLTKLKEIISTITNSTVCEIPREIGNLPYLARLALATN 214
             L+ +++  N+L   +P    +L  +        N+ + E+P E+ NLP+L  +    N
Sbjct: 153 SFLKIIDVDNNSLK-KLPDLPPSLEFI-----AAGNNQLEELP-ELQNLPFLTAIYADNN 205

Query: 215 NLVGVVPVTIFNMSALKEISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSIT 274
           +L   +P    +   L+ I   NN L   LP     +LP + T+    N    T+P    
Sbjct: 206 SLK-KLPDLPLS---LESIVAGNNILE-ELPEL--QNLPFLTTIYADNNLLK-TLPDLPP 257

Query: 275 NSSKLSDLELGENLFSGFIPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTN------ 328
           +   L  L + +N  +  +P    +L  L+      + L+   P L +L++ +N      
Sbjct: 258 S---LEALNVRDNYLTD-LPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLC 313

Query: 329 --CKKLKVLIVTGNPLDGILPKSIGNFSLSLETILMANCSISGNIPQVVGNLSNLLVLEL 386
                L+ L V+ N L   LP         LE ++ +   ++  +P+      NL  L +
Sbjct: 314 DLPPSLEELNVSNNKLI-ELPALPPR----LERLIASFNHLA-EVPE---LPQNLKQLHV 364

Query: 387 GGNNLTGPIPVTFSQLQTLQAFDLTRNKLAGPITDELCHLARLHSLVLQGNKFSGSIPSC 446
             N L    P     ++ L+      + L   + +   +L +LH   ++ N      P  
Sbjct: 365 EYNPLRE-FPDIPESVEDLRM----NSHL-AEVPELPQNLKQLH---VETNPLR-EFPDI 414

Query: 447 LGNLTSVRVLYLGLNIFTSVLSSTIWNLKDILF 479
             ++  +R+    +         T   L+D +F
Sbjct: 415 PESVEDLRMNSERVVDPYEFAHETTDKLEDDVF 447

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  128 bits (324), Expect = 8e-32
 Identities = 61/358 (17%), Positives = 116/358 (32%), Gaps = 64/358 (17%)

Query: 70  PQLGNLSSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQLFGSLSSFIFNMSSMTTI 129
           P+L N S L+ +D+ +N L   +P    +   L+ +   +NQL   L     N+  +T I
Sbjct: 147 PELQNSSFLKIIDVDNNSLK-KLPDLPPS---LEFIAAGNNQL-EELPELQ-NLPFLTAI 200

Query: 130 DLSINRLSGELPANICK------------IPSTLSKCKQLEELNLGFNNLSGAIPKEIGN 177
               N L  +LP                     L     L  +    N L   +P    +
Sbjct: 201 YADNNSLK-KLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLK-TLPDLPPS 258

Query: 178 LTKLKEIISTITNSTVCEIPREIGNLPYLARLALATNNLVGVVPVTIFNMSALKEISLLN 237
           L  L      + ++ + ++P    +L +L       + L  + P        L  ++  +
Sbjct: 259 LEAL-----NVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPP-------NLYYLNASS 306

Query: 238 NSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSITNSSKLSDLELGENLFSGFIPNTI 297
           N +  SL        P++E LN+  N     +P+       L  L    N  +  +P   
Sbjct: 307 NEIR-SLCD----LPPSLEELNVSNNKLI-ELPALPPR---LERLIASFNHLA-EVPELP 356

Query: 298 GNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGILPKSIGNFSLSL 357
            NL+ L   ++  N L         +  L     L             +P+   N    L
Sbjct: 357 QNLKQL---HVEYNPLREFPDIPESVEDLRMNSHLA-----------EVPELPQN----L 398

Query: 358 ETILMANCSISGNIPQVVGNLSNLLVLELGGNNLTGPIPVTFSQLQTLQAFDLTRNKL 415
           + + +    +    P +  ++ +L    +    +  P          L+      +  
Sbjct: 399 KQLHVETNPLR-EFPDIPESVEDL---RMNSERVVDPYEFAHETTDKLEDDVFEHHHH 452

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  124 bits (314), Expect = 2e-30
 Identities = 89/416 (21%), Positives = 153/416 (36%), Gaps = 72/416 (17%)

Query: 57  LNISSFNLQGTITPQLGNLSSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQLFGSL 116
           L  S  +L   +     +L SL   + +   LS   P        L+ L  S+NQL   L
Sbjct: 96  LVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLPPL-------LEYLGVSNNQL-EKL 146

Query: 117 SSFIFNMSSMTTIDLSINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEIG 176
              + N S +  ID+  N L  +LP               LE +  G N L   +P E+ 
Sbjct: 147 PE-LQNSSFLKIIDVDNNSLK-KLPDLP----------PSLEFIAAGNNQLE-ELP-ELQ 192

Query: 177 NLTKLKEIISTITNSTVCEIPREIGNLPYLARLALATNNLVGVVPVTIFNMSALKEISLL 236
           NL  L  I     N+++ ++P    +L  +    +A NN++  +P  + N+  L  I   
Sbjct: 193 NLPFLTAIY--ADNNSLKKLPDLPLSLESI----VAGNNILEELP-ELQNLPFLTTIYAD 245

Query: 237 NNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSITNSSKLSDLELGENLFSGFIPNT 296
           NN L  +LP       P++E LN+  N  +  +P    +   L+ L++ EN+FSG +   
Sbjct: 246 NNLLK-TLPD----LPPSLEALNVRDNYLT-DLPELPQS---LTFLDVSENIFSG-LSEL 295

Query: 297 IGNLRNLEFGNIADNYLTSSTPELSFLSSL-----------TNCKKLKVLIVTGNPLDGI 345
             NL  L   N + N + S       L  L               +L+ LI + N L   
Sbjct: 296 PPNLYYL---NASSNEIRSLCDLPPSLEELNVSNNKLIELPALPPRLERLIASFNHL-AE 351

Query: 346 LPKSIGNFSLSLETILMANCSISGNIPQVVGNLSNLLVLELGGNNLTGPIPVTFSQLQTL 405
           +P+   N    L+ + +    +    P +  ++ +L +     N+    +P     L+ L
Sbjct: 352 VPELPQN----LKQLHVEYNPLR-EFPDIPESVEDLRM-----NSHLAEVPELPQNLKQL 401

Query: 406 QAFDLTRNKLAGPITDELCHLARLHSLVLQGNKFSGSIPSCLGNLTSVRVLYLGLN 461
               +  N L     D    +  L    +   +              +       +
Sbjct: 402 ---HVETNPLRE-FPDIPESVEDLR---MNSERVVDPYEFAHETTDKLEDDVFEHH 450

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 65.0 bits (159), Expect = 4e-11
 Identities = 35/194 (18%), Positives = 65/194 (33%), Gaps = 43/194 (22%)

Query: 75  LSSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQLFGSLSSFIFNMSSMTTIDLSIN 134
             SL  LD+S N  S  +     N   L  L+ S N++     S      S+  +++S N
Sbjct: 276 PQSLTFLDVSENIFS-GLSELPPN---LYYLNASSNEI----RSLCDLPPSLEELNVSNN 327

Query: 135 RLSGELPANICK-------------IPSTLSKCKQLEELNLGFNNLSGAIPKEIGNLTKL 181
           +L  ELPA   +             +P        L++L++ +N L    P    ++  L
Sbjct: 328 KLI-ELPALPPRLERLIASFNHLAEVPELPQN---LKQLHVEYNPLR-EFPDIPESVEDL 382

Query: 182 K------EIISTITNSTV--------CEIPREIGNLPYLARLALATNNLVGVVPVTIFNM 227
           +      E+     N            E P    ++  L    + +  +V          
Sbjct: 383 RMNSHLAEVPELPQNLKQLHVETNPLREFPDIPESVEDLR---MNSERVVDPYEFAHETT 439

Query: 228 SALKEISLLNNSLS 241
             L++    ++   
Sbjct: 440 DKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 64.6 bits (158), Expect = 6e-11
 Identities = 39/248 (15%), Positives = 75/248 (30%), Gaps = 48/248 (19%)

Query: 292 FIPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGILPKSIG 351
           FI     +   L+      + LT    E   + S T            +  +   P   G
Sbjct: 2   FINPRNVSNTFLQEPLRHSSNLTEMPVEAENVKSKTE------YYNAWSEWERNAPPGNG 55

Query: 352 N------------FSLSLETILMANCSISGNIPQVVGNLSNLLVLELGGNNLTGPIPVTF 399
                               + + N  +S ++P++  +L +L+      N+LT  +P   
Sbjct: 56  EQREMAVSRLRDCLDRQAHELELNNLGLS-SLPELPPHLESLV---ASCNSLT-ELPELP 110

Query: 400 SQLQTLQAFDLTRNKLAGPIT---------------DELCHLARLHSLVLQGNKFSGSIP 444
             L++L   +     L+                    EL + + L  + +  N     +P
Sbjct: 111 QSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLK-KLP 169

Query: 445 SCLGNLTSVRVLYLGLNIFTSVLSSTIWNLKDILFIDVSSNFLDGPLSLDIGNLKVVIGL 504
               +L     +  G N    +    + NL  +  I   +N L   L     +L+    +
Sbjct: 170 DLPPSLEF---IAAGNNQLEEL--PELQNLPFLTAIYADNNSLKK-LPDLPLSLES---I 220

Query: 505 DFSRNNLS 512
               N L 
Sbjct: 221 VAGNNILE 228

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  138 bits (350), Expect = 5e-35
 Identities = 61/434 (14%), Positives = 131/434 (30%), Gaps = 50/434 (11%)

Query: 73  GNLSSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQLFGSLSSFIFNMSSMTTIDLS 132
            N +  +   ++ + L   + S   +   +K LD S N L    ++ +   + +  ++LS
Sbjct: 7   QNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLS 66

Query: 133 INRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEIGNLTKLKEI------IS 186
            N L              L     L  L+L  N +      E+     ++ +      IS
Sbjct: 67  SNVLYE---------TLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS 112

Query: 187 TITNSTVCEIPREIGNLPYLARLALATNNLVGVVPVTIFNMSALKEISLLNNSLSGSLPS 246
            +                    + LA N +  +  +     S ++ + L  N +     +
Sbjct: 113 RV----------SCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA 162

Query: 247 RIDLSLPNVETLNLGINSFSGTIPSSITNSSKLSDLELGENLFSGFIPNTIGNLRNLEFG 306
            +  S   +E LNL  N     +   +  +  L  L+L  N  + F+     +   + + 
Sbjct: 163 ELAASSDTLEHLNLQYNFIY-DVKGQVVFAK-LKTLDLSSNKLA-FMGPEFQSAAGVTWI 219

Query: 307 NIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGILPKSIGNFSLSLETILM-ANC 365
           ++ +N L      L F  +L +        + GN       +   + +  ++T+      
Sbjct: 220 SLRNNKLVLIEKALRFSQNLEH------FDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK 273

Query: 366 SISGNIPQVVGNLSNLLVLELGGNNLTGPIPVTFSQLQTLQAFDLTRNKLAG----PITD 421
            ++G   +     +   +   G             +L  L+  +       G     +  
Sbjct: 274 KLTGQNEE---ECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLEC 330

Query: 422 ELCHLARLHSLVLQGNKFSGSIPSCLGNLTSVRVLYLGLNIFTSVLSST---IWNLKDIL 478
           E  + AR   +     ++   I        +   L          +S+       L   L
Sbjct: 331 ERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTL 390

Query: 479 FIDVSSNFLDGPLS 492
              V    L     
Sbjct: 391 QQAVGQIELQHATE 404

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  121 bits (306), Expect = 2e-29
 Identities = 65/408 (15%), Positives = 122/408 (29%), Gaps = 45/408 (11%)

Query: 115 SLSSFIFNMSSMTTIDLSINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKE 174
           ++     N +      ++ + L  +         S       ++EL+L  N LS     +
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLK-QAL------ASLRQSAWNVKELDLSGNPLSQISAAD 53

Query: 175 IGNLTKLKEI------ISTITNSTVCEIPREIGNLPYLARLALATNNLVGVVPVTIFNMS 228
           +   TKL+ +      +             ++ +L  L  L L  N +       +    
Sbjct: 54  LAPFTKLELLNLSSNVLYETL---------DLESLSTLRTLDLNNNYV-----QELLVGP 99

Query: 229 ALKEISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSITNSSKLSDLELGENL 288
           +++ +   NN++S  +           + + L  N  +          S++  L+L  N 
Sbjct: 100 SIETLHAANNNIS-RVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE 155

Query: 289 FSGF-IPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGILP 347
                      +   LE  N+  N++         +       KLK L ++ N L  +  
Sbjct: 156 IDTVNFAELAASSDTLEHLNLQYNFIYD-------VKGQVVFAKLKTLDLSSNKLAFM-G 207

Query: 348 KSIGNFSLSLETILMANCSISGNIPQVVGNLSNLLVLELGGNNL-TGPIPVTFSQLQTLQ 406
               + +  +  I + N  +   I + +    NL   +L GN    G +   FS+ Q +Q
Sbjct: 208 PEFQSAA-GVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQ 265

Query: 407 AFDLTRNK-LAGPITDELCHLARLHSLVLQGNKFSGSIPSCLGNLTSVRVLYLGL-NIFT 464
                  K L G   +E       H                L  L       L      T
Sbjct: 266 TVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSET 325

Query: 465 SVLSSTIWNLKDILFIDVSSNFLDGPLSLDIGNLKVVIGLDFSRNNLS 512
             L     N      ID         +       +  I L+  +  L 
Sbjct: 326 ERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALD 373

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 66.4 bits (162), Expect = 2e-11
 Identities = 22/150 (14%), Positives = 55/150 (36%), Gaps = 10/150 (6%)

Query: 371 IPQVVGNLSNLLVLELGGNNLTGPIPVTFSQLQTLQAFDLTRNKLAGPITDELCHLARLH 430
           I ++  N +   + ++  ++L   +         ++  DL+ N L+     +L    +L 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 431 SLVLQGNKFSGSIPSCLGNLTSVRVLYLGLNIFTSVLSSTIWNLKDILFIDVSSNFLDGP 490
            L L  N    ++   L +L+++R L L  N         +     I  +  ++N +   
Sbjct: 62  LLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAANNNIS-- 112

Query: 491 LSLDIGNLKVVIGLDFSRNNLSGDIPITIG 520
             +     +    +  + N ++    +  G
Sbjct: 113 -RVSCSRGQGKKNIYLANNKITMLRDLDEG 141

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  138 bits (349), Expect = 3e-34
 Identities = 66/361 (18%), Positives = 129/361 (35%), Gaps = 59/361 (16%)

Query: 75  LSSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQLFGSLSSFIFNMSSMTTIDLSIN 134
            +    L++  + L+  +P  +     +  L   DN L    +S       + T+++S N
Sbjct: 39  NNGNAVLNVGESGLT-TLPDCLPA--HITTLVIPDNNL----TSLPALPPELRTLEVSGN 91

Query: 135 RLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEIGNLTKLKEIISTITNSTVC 194
           +L+         +P       +L   +    +L    P     L KL      I  + + 
Sbjct: 92  QLT--------SLPVLPPGLLELSIFSNPLTHL----PALPSGLCKL-----WIFGNQLT 134

Query: 195 EIPREIGNLPYLARLALATNNLVGVVPVTIFNMSALKEISLLNNSLSGSLPSRIDLSLPN 254
            +P     L     L+++ N L   +P        L ++   NN L+ SLP         
Sbjct: 135 SLPVLPPGL---QELSVSDNQL-ASLPALPSE---LCKLWAYNNQLT-SLPM----LPSG 182

Query: 255 VETLNLGINSFSGTIPSSITNSSKLSDLELGENLFSGFIPNTIGNLRNLEFGNIADNYLT 314
           ++ L++  N  + ++P+  +    L  L    N  +  +P     L+ L    ++ N LT
Sbjct: 183 LQELSVSDNQLA-SLPTLPSE---LYKLWAYNNRLT-SLPALPSGLKEL---IVSGNRLT 234

Query: 315 SSTPELSFLSSLTNCKKLKVLIVTGNPLDGILPKSIGNFSLSLETILMANCSISGNIPQV 374
           S     S         +LK L+V+GN L   LP         L ++ +    ++  +P+ 
Sbjct: 235 SLPVLPS---------ELKELMVSGNRLT-SLPMLPSG----LLSLSVYRNQLT-RLPES 279

Query: 375 VGNLSNLLVLELGGNNLTGPIPVTFSQLQTLQAFDLTRNKLAGPITDELCHLARLHSLVL 434
           + +LS+   + L GN L+        ++ +   +     +              LH    
Sbjct: 280 LIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAA 339

Query: 435 Q 435
            
Sbjct: 340 D 340

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  124 bits (313), Expect = 1e-29
 Identities = 71/369 (19%), Positives = 129/369 (34%), Gaps = 60/369 (16%)

Query: 55  IGLNISSFNLQG-TITPQLGNLSSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQLF 113
           +  +I++  +    +T        L+TL++S N+L+ ++P     +  L +       L 
Sbjct: 59  LPAHITTLVIPDNNLTSLPALPPELRTLEVSGNQLT-SLPVLPPGLLELSIFSNPLTHLP 117

Query: 114 GSLSSFIFNMSSMTTIDLSINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPK 173
                     S +  + +  N+L+  LP               L+EL++  N L+ ++P 
Sbjct: 118 ALP-------SGLCKLWIFGNQLT-SLPVLP----------PGLQELSVSDNQLA-SLPA 158

Query: 174 EIGNLTKLKEIISTITNSTVCEIPREIGNLPYLARLALATNNLVGVVPVTIFNMSALKEI 233
               L KL        N+ +  +P        L  L+++ N L   +P        L ++
Sbjct: 159 LPSELCKL-----WAYNNQLTSLPMLPSG---LQELSVSDNQLA-SLPTLPSE---LYKL 206

Query: 234 SLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSITNSSKLSDLELGENLFSGFI 293
              NN L+ SLP+        ++ L +  N  + ++P   +    L +L +  N  +  +
Sbjct: 207 WAYNNRLT-SLPA----LPSGLKELIVSGNRLT-SLPVLPSE---LKELMVSGNRLTS-L 256

Query: 294 PNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGILPKSIGNF 353
           P     L +L   ++  N LT   PE     SL +      + + GNPL           
Sbjct: 257 PMLPSGLLSL---SVYRNQLT-RLPE-----SLIHLSSETTVNLEGNPLS-ERTLQALRE 306

Query: 354 SLSLETILMANCSIS---GNIPQVVGNLSNLLVLELGGNNLTGPIPVT----FSQLQTLQ 406
             S                + P+    L       L       P P      F Q     
Sbjct: 307 ITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEPAPADRWHMFGQEDNAD 366

Query: 407 AFDLTRNKL 415
           AF L  ++L
Sbjct: 367 AFSLFLDRL 375

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  136 bits (345), Expect = 8e-34
 Identities = 69/388 (17%), Positives = 141/388 (36%), Gaps = 63/388 (16%)

Query: 56  GLNISSFNLQGTITPQLGNLSSLQTLDLSHNKLSGNIPSSIF-NMHTLKLLDFSDNQLFG 114
            ++I           +   L++ + +   ++ +   +P+++  +   ++LL+ +D Q+  
Sbjct: 31  DVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQI-E 88

Query: 115 SLSSFIF-NMSSMTTIDLSINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPK 173
            + ++ F    ++  + +  N +   LP      P        L  L L  N+LS     
Sbjct: 89  EIDTYAFAYAHTIQKLYMGFNAIR-YLP------PHVFQNVPLLTVLVLERNDLS----- 136

Query: 174 EIGNLTKLKEIISTITNSTVCEIPREI-GNLPYLARLALATNNLVGVVPVTIFNMSALKE 232
                                 +PR I  N P L  L+++ NNL  +   T    ++L+ 
Sbjct: 137 ---------------------SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQN 175

Query: 233 ISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSITNSSKLSDLELGENLFSGF 292
           + L +N L+  +       +P++   N+  N       S++     + +L+   N  +  
Sbjct: 176 LQLSSNRLT-HVDLS---LIPSLFHANVSYNLL-----STLAIPIAVEELDASHNSINVV 226

Query: 293 IPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGILPKSIGN 352
                  L  L    +  N LT         + L N   L  + ++ N L+ I+      
Sbjct: 227 RGPVNVELTIL---KLQHNNLTD-------TAWLLNYPGLVEVDLSYNELEKIMYHPFVK 276

Query: 353 FSLSLETILMANCSISGNIPQVVGNLSNLLVLELGGNNLTGPIPVTFSQLQTLQAFDLTR 412
               LE + ++N  +   +      +  L VL+L  N+L   +     Q   L+   L  
Sbjct: 277 MQ-RLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDH 333

Query: 413 NKLAGPITDELCHLARLHSLVLQGNKFS 440
           N +    T +L     L +L L  N + 
Sbjct: 334 NSIV---TLKLSTHHTLKNLTLSHNDWD 358

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 86.9 bits (215), Expect = 8e-18
 Identities = 44/300 (14%), Positives = 105/300 (35%), Gaps = 37/300 (12%)

Query: 232 EISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSITNSSKLSDLELGENLFSG 291
            I +    +        D++L N + +    ++      + + +  ++  L L +     
Sbjct: 33  HIDMQTQDVYFGFE---DITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEE 89

Query: 292 FIPNTIGNLRNLEFGNIADNYLTS-------STPELSFLS------------SLTNCKKL 332
                      ++   +  N +         + P L+ L                N  KL
Sbjct: 90  IDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKL 149

Query: 333 KVLIVTGNPLDGILPKSIGNFSLSLETILMANCSISGNIPQVVGNLSNLLVLELGGNNLT 392
             L ++ N L+ I   +    + SL+ + +++  ++ ++   +  + +L    +  N L+
Sbjct: 150 TTLSMSNNNLERIEDDTFQATT-SLQNLQLSSNRLT-HVD--LSLIPSLFHANVSYNLLS 205

Query: 393 GPIPVTFSQLQTLQAFDLTRNKLAGPITDELCHLARLHSLVLQGNKFSGSIPSCLGNLTS 452
                T +    ++  D + N +   +   +     L  L LQ N  +      L N   
Sbjct: 206 -----TLAIPIAVEELDASHNSINV-VRGPVN--VELTILKLQHNNLT-DTAW-LLNYPG 255

Query: 453 VRVLYLGLNIFTSVLSSTIWNLKDILFIDVSSNFLDGPLSLDIGNLKVVIGLDFSRNNLS 512
           +  + L  N    ++      ++ +  + +S+N L   L+L    +  +  LD S N+L 
Sbjct: 256 LVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL 314

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 75.7 bits (186), Expect = 3e-14
 Identities = 39/245 (15%), Positives = 89/245 (36%), Gaps = 17/245 (6%)

Query: 268 TIPSSITNSSKLSDLELGENLFSGFIPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLT 327
            I S++       D+ +       +       L N +     ++ +      L     L 
Sbjct: 18  CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAAL-----LD 72

Query: 328 NCKKLKVLIVTGNPLDGILPKSIGNFSLSLETILMANCSISGNIPQVVGNLSNLLVLELG 387
           + +++++L +    ++ I   +      +++ + M   +I    P V  N+  L VL L 
Sbjct: 73  SFRQVELLNLNDLQIEEIDTYAFAYAH-TIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLE 131

Query: 388 GNNLTGPIPVTFSQLQTLQAFDLTRNKLAGPITDELCHLARLHSLVLQGNKFSGSIPSCL 447
            N+L+      F     L    ++ N L     D       L +L L  N+ +  +   L
Sbjct: 132 RNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD--L 188

Query: 448 GNLTSVRVLYLGLNIFTSVLSSTIWNLKDILFIDVSSNFLDGPLSLDIGNLKVVIGLDFS 507
             + S+    +  N+ +++  +    +++   +D S N ++    +       +  L   
Sbjct: 189 SLIPSLFHANVSYNLLSTL--AIPIAVEE---LDASHNSIN---VVRGPVNVELTILKLQ 240

Query: 508 RNNLS 512
            NNL+
Sbjct: 241 HNNLT 245

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 71.5 bits (175), Expect = 5e-13
 Identities = 57/353 (16%), Positives = 103/353 (29%), Gaps = 27/353 (7%)

Query: 67  TITPQLGNLSSLQTLDLSHNKLSGNIPSSIF-NMHTLKLLDFSDNQLFGSLSSFIFNMSS 125
           T T  L N   L  +DLS+N+L   I    F  M  L+ L  S+N+L  +L+ +   + +
Sbjct: 245 TDTAWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRL-VALNLYGQPIPT 302

Query: 126 MTTIDLSINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEIGNLTKLKEII 185
           +  +DLS N L          +     +  +LE L L  N++   +   +     LK  +
Sbjct: 303 LKVLDLSHNHLL--------HVERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLKN-L 350

Query: 186 STITNSTVCEIPREIGNLPYLARLALATNNLVGVVPVTIFNMSALKEISLLNNSLSGSLP 245
           +   N   C   R +     +AR A+   +    +   + +        L          
Sbjct: 351 TLSHNDWDCNSLRAL--FRNVARPAVDDADQHCKIDYQLEH-------GLCCKESDKPYL 401

Query: 246 SRIDLSLPNVETLNLGINSFSGTIPSSITNSSKLSDLELGENLFSGFIPNTIGNLRNLEF 305
            R+   +     +     +      +   NS +     + +        N        E 
Sbjct: 402 DRLLQYIALTSVVEKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQGNEQLEAEVNEL 461

Query: 306 GNIADNYLTSSTPELSFLSSL--TNCKKLKVLIVTGNPLDGILPKSIGNFSLSLETILMA 363
                        +   L  L       L+   +  + L          F+   E     
Sbjct: 462 RAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLARSSDNLNKVFTHLKERQAFK 521

Query: 364 NCSISGNIPQVVGNLSNLLVLELGGNNLTGPI-PVTFSQLQTLQAFDLTRNKL 415
                    +          LE     L   +      Q +  Q   L R K+
Sbjct: 522 LRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKV 574

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A* Length = 307

 Score =  129 bits (327), Expect = 2e-33
 Identities = 57/219 (26%), Positives = 86/219 (39%), Gaps = 69/219 (31%)

Query: 616 RRFSYHELLRATDRFSE------NNLIGIG----------NGMEVAVKVFHQQYERA--- 656
             FS++EL   T+ F E       N +G G          N   VAVK      +     
Sbjct: 13  HSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYVNNTTVAVKKLAAMVDITTEE 72

Query: 657 -LKSFEDECEVRKRIRHRNLVKII-----------------SSSLEY------------- 685
             + F+ E +V  + +H NLV+++                 + SL               
Sbjct: 73  LKQQFDQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGTPPLSW 132

Query: 686 -------------LHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQ 732
                        ++F H    IH D+K +N+LLDE   A ISDFG+A+      Q    
Sbjct: 133 HMRCKIAQGAANGINFLHENHHIHRDIKSANILLDEAFTAKISDFGLARASEKFAQTVMT 192

Query: 733 TQTLATIGYMAPEYGTKGRVSTRGDVCSFG-----IISG 766
           ++ + T  YMAPE    G ++ + D+ SFG     II+G
Sbjct: 193 SRIVGTTAYMAPEALR-GEITPKSDIYSFGVVLLEIITG 230

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  124 bits (313), Expect = 3e-30
 Identities = 71/374 (18%), Positives = 138/374 (36%), Gaps = 51/374 (13%)

Query: 76  SSLQTLDLSHNKLSGNIPSSIF-NMHTLKLLDFSDNQLFGSLSSFIF-NMSSMTTIDLSI 133
           +  + LDL  N++   +    F +   L+ L+ ++N +  ++    F N+ ++ T+ L  
Sbjct: 32  TETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIV-SAVEPGAFNNLFNLRTLGLRS 89

Query: 134 NRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEIGNLTKLKEIISTITNSTV 193
           NRL   +P          +    L +L++  N +                          
Sbjct: 90  NRLK-LIPLG------VFTGLSNLTKLDISENKIV------------------------- 117

Query: 194 CEIPREI-GNLPYLARLALATNNLVGVVPVTIFNMSALKEISLLNNSLSGSLPSRIDLSL 252
             +   +  +L  L  L +  N+LV +       +++L++++L   +L+ S+P+     L
Sbjct: 118 -ILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHL 175

Query: 253 PNVETLNLGINSFSGTIPSSITNSSKLSDLELGENLFSGFIPNTIGNLRNLEFGNIADNY 312
             +  L L   + +     S     +L  LE+    +   +        NL   +I    
Sbjct: 176 HGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCN 235

Query: 313 LTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGILPKSIGNFSLSLETILMANCSISGNIP 372
           LT + P L+      +   L+ L ++ NP+  I    +      L+ I +    ++   P
Sbjct: 236 LT-AVPYLAV----RHLVYLRFLNLSYNPISTIEGSMLHELL-RLQEIQLVGGQLAVVEP 289

Query: 373 QVVGNLSNLLVLELGGNNLTGPIPVTFSQLQTLQAFDLTRNKLAGPITDELCHLARLHSL 432
                L+ L VL + GN LT      F  +  L+   L  N L     D  C L  +   
Sbjct: 290 YAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPL---ACD--CRLLWVFRR 344

Query: 433 VLQGNKFSGSIPSC 446
                 F+   P+C
Sbjct: 345 -RWRLNFNRQQPTC 357

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  115 bits (289), Expect = 3e-27
 Identities = 65/292 (22%), Positives = 120/292 (41%), Gaps = 33/292 (11%)

Query: 61  SFNLQGTITPQ-LGNLSSLQTLDLSHNKLSGNIPSSIF-NMHTLKLLDFSDNQLFGSLSS 118
           + N+   + P    NL +L+TL L  N+L   IP  +F  +  L  LD S+N++   L  
Sbjct: 64  NENIVSAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKI-VILLD 121

Query: 119 FIF-NMSSMTTIDLSINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEI-G 176
           ++F ++ ++ ++++  N L   +           S    LE+L L   NL+ +IP E   
Sbjct: 122 YMFQDLYNLKSLEVGDNDLV-YISHR------AFSGLNSLEQLTLEKCNLT-SIPTEALS 173

Query: 177 NLTKLKEI------ISTITNSTVCEIPREIGNLPYLARLALATNNLVGVVPVTIFNMSAL 230
           +L  L  +      I+ I + +          L  L  L ++    +  +         L
Sbjct: 174 HLHGLIVLRLRHLNINAIRDYS-------FKRLYRLKVLEISHWPYLDTMTPNCLYGLNL 226

Query: 231 KEISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSITNSSKLSDLELGENLFS 290
             +S+ + +L+ ++P      L  +  LNL  N  S    S +    +L +++L     +
Sbjct: 227 TSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLA 285

Query: 291 GFIPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPL 342
              P     L  L   N++ N LT+    +       +   L+ LI+  NPL
Sbjct: 286 VVEPYAFRGLNYLRVLNVSGNQLTTLEESV-----FHSVGNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 99.8 bits (249), Expect = 4e-22
 Identities = 71/334 (21%), Positives = 123/334 (36%), Gaps = 31/334 (9%)

Query: 219 VVPVTIFNMSALKEISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSITNSSK 278
            VP  I   +  + + L  N +  +L      S P++E L L  N  S   P +  N   
Sbjct: 25  AVPEGIP--TETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFN 81

Query: 279 LSDLELGENLFSGFIPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVT 338
           L  L L  N            L NL   +I++N +      +     L N   LK L V 
Sbjct: 82  LRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYM--FQDLYN---LKSLEVG 136

Query: 339 GNPLDGILPKSIGNFSLSLETILMANCSISGNIPQVVGNLSNLLVLELGGNNLTGPIPVT 398
            N L  I  ++    + SLE + +  C+++    + + +L  L+VL L   N+      +
Sbjct: 137 DNDLVYISHRAFSGLN-SLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYS 195

Query: 399 FSQLQTLQAFDLTRNKLAGPITDELCHLARLHSLVLQGNKFSGSIPSC-LGNLTSVRVLY 457
           F +L  L+  +++       +T    +   L SL +     + ++P   + +L  +R L 
Sbjct: 196 FKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLN 254

Query: 458 LGLNIFTSVLSSTIWNLKDILFIDVSSNFL----DGPLSLDIGNLKVVIGLDFSRNNLSG 513
           L  N  +++  S +  L  +  I +    L           +  L+V   L+ S N L+ 
Sbjct: 255 LSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFR-GLNYLRV---LNVSGNQLT- 309

Query: 514 DIPITIGEGEIPRG--GPFANLTAKSFMGNELLC 545
                     +         NL       N L C
Sbjct: 310 ---------TLEESVFHSVGNLETLILDSNPLAC 334

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 95.6 bits (238), Expect = 9e-21
 Identities = 39/221 (17%), Positives = 87/221 (39%), Gaps = 17/221 (7%)

Query: 74  NLSSLQTLDLSHNKLSGNIPSSIF-NMHTLKLLDFSDNQLFGSLSSFIF-NMSSMTTIDL 131
           +L +L++L++  N L   I    F  +++L+ L      L  S+ +    ++  +  + L
Sbjct: 126 DLYNLKSLEVGDNDLV-YISHRAFSGLNSLEQLTLEKCNL-TSIPTEALSHLHGLIVLRL 183

Query: 132 SINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEIGNLTKLKEIISTITNS 191
               ++  +         +  +  +L+ L +        +         L  +  +IT+ 
Sbjct: 184 RHLNIN-AIR------DYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSL--SITHC 234

Query: 192 TVCEIPRE-IGNLPYLARLALATNNLVGVVPVTIFNMSALKEISLLNNSLSGSLPSRIDL 250
            +  +P   + +L YL  L L+ N +  +    +  +  L+EI L+   L+  +      
Sbjct: 235 NLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLA-VVEPYAFR 293

Query: 251 SLPNVETLNLGINSFSGTIPSSI-TNSSKLSDLELGENLFS 290
            L  +  LN+  N  + T+  S+  +   L  L L  N  +
Sbjct: 294 GLNYLRVLNVSGNQLT-TLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 82.5 bits (204), Expect = 1e-16
 Identities = 36/173 (20%), Positives = 72/173 (41%), Gaps = 14/173 (8%)

Query: 72  LGNLSSLQTLDLSHNKLSGNIPSSIF-NMHTLKLLDFSDNQLFGSLSSFIFNMSSMTTID 130
           L +L  L  L L H  ++  I    F  ++ LK+L+ S      +++       ++T++ 
Sbjct: 172 LSHLHGLIVLRLRHLNIN-AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLS 230

Query: 131 LSINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEI-GNLTKLKEIISTIT 189
           ++   L+  +P         +     L  LNL +N +S  I   +   L +L+EI   + 
Sbjct: 231 ITHCNLT-AVPYL------AVRHLVYLRFLNLSYNPIS-TIEGSMLHELLRLQEIQ--LV 280

Query: 190 NSTVCEIPREI-GNLPYLARLALATNNLVGVVPVTIFNMSALKEISLLNNSLS 241
              +  +       L YL  L ++ N L  +      ++  L+ + L +N L+
Sbjct: 281 GGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  120 bits (302), Expect = 6e-30
 Identities = 50/280 (17%), Positives = 107/280 (38%), Gaps = 28/280 (10%)

Query: 50  NSHRVIGLNISSFNLQGTITPQLGNLSSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSD 109
           N +R     ++  +L+  +     +  +++ LDLS N LS    + +     L+LL+ S 
Sbjct: 8   NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS 67

Query: 110 NQLFGSLSSFIFNMSSMTTIDLSINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSG 169
           N L         ++S++ T+DL+ N +              L     +E L+   NN+S 
Sbjct: 68  NVL-YETLDL-ESLSTLRTLDLNNNYV------------QELLVGPSIETLHAANNNIS- 112

Query: 170 AIPKEIG-NLTKLKEIISTITNSTVCEIPR-EIGNLPYLARLALATNNLVGVVPVTIF-N 226
            +    G     +      + N+ +  +   + G    +  L L  N +  V    +  +
Sbjct: 113 RVSCSRGQGKKNIY-----LANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAAS 167

Query: 227 MSALKEISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSITNSSKLSDLELGE 286
              L+ ++L  N +   +     +    ++TL+L  N  +  +     +++ ++ + L  
Sbjct: 168 SDTLEHLNLQYNFIY-DVKG--QVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRN 223

Query: 287 NLFSGFIPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSL 326
           N     I   +   +NLE  ++  N     T    F  + 
Sbjct: 224 NKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQ 262

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  118 bits (298), Expect = 2e-29
 Identities = 53/323 (16%), Positives = 107/323 (33%), Gaps = 43/323 (13%)

Query: 115 SLSSFIFNMSSMTTIDLSINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKE 174
           ++     N +      ++ + L  +         S       ++EL+L  N LS     +
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLK-QAL------ASLRQSAWNVKELDLSGNPLSQISAAD 53

Query: 175 IGNLTKLKEI------ISTITNSTVCEIPREIGNLPYLARLALATNNLVGVVPVTIFNMS 228
           +   TKL+ +      +             ++ +L  L  L L  N +       +    
Sbjct: 54  LAPFTKLELLNLSSNVLYETL---------DLESLSTLRTLDLNNNYV-----QELLVGP 99

Query: 229 ALKEISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSITNSSKLSDLELGENL 288
           +++ +   NN++S  +           + + L  N  +          S++  L+L  N 
Sbjct: 100 SIETLHAANNNIS-RVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE 155

Query: 289 FSGF-IPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGILP 347
                      +   LE  N+  N++         +       KLK L ++ N L  +  
Sbjct: 156 IDTVNFAELAASSDTLEHLNLQYNFIYD-------VKGQVVFAKLKTLDLSSNKLAFM-G 207

Query: 348 KSIGNFSLSLETILMANCSISGNIPQVVGNLSNLLVLELGGNNLT-GPIPVTFSQLQTLQ 406
               + +  +  I + N  +   I + +    NL   +L GN    G +   FS+ Q +Q
Sbjct: 208 PEFQSAA-GVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQ 265

Query: 407 AFDLTRNKLAGPITDELCHLARL 429
                  K      +E C +  L
Sbjct: 266 TVAKQTVKKLTGQNEEECTVPTL 288

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  116 bits (293), Expect = 9e-29
 Identities = 51/323 (15%), Positives = 110/323 (34%), Gaps = 30/323 (9%)

Query: 74  NLSSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQLFGSLSSFIFNMSSMTTIDLSI 133
           N +  +   ++ + L   + S   +   +K LD S N L    ++ +   + +  ++LS 
Sbjct: 8   NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS 67

Query: 134 NRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEIGNLTKLKEIISTITNSTV 193
           N L  E           L     L  L+L  N +      E+     ++ +     N+ +
Sbjct: 68  NVLY-ETLD--------LESLSTLRTLDLNNNYVQ-----ELLVGPSIETL--HAANNNI 111

Query: 194 CEIPREIGNLPYLARLALATNNLVGVVPVTIFNMSALKEISLLNNSLSGSLPSRIDLSLP 253
             +    G       + LA N +  +  +     S ++ + L  N +     + +  S  
Sbjct: 112 SRVSCSRGQG--KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSD 169

Query: 254 NVETLNLGINSFSGTIPSSITNSSKLSDLELGENLFSGFIPNTIGNLRNLEFGNIADNYL 313
            +E LNL  N     +   +   +KL  L+L  N  + F+     +   + + ++ +N L
Sbjct: 170 TLEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKL 226

Query: 314 TSSTPELSFLSSLTNCKKLKVLIVTGNPLDGILPKSIGNFSLSLETILMANCSISGNIPQ 373
                 L F  +L +        + GN       +   + +  ++T+          +  
Sbjct: 227 VLIEKALRFSQNLEH------FDLRGNGFHCGTLRDFFSKNQRVQTV---AKQTVKKLTG 277

Query: 374 VVGNLSNLLVLELGGNNLTGPIP 396
                  +  L   G      +P
Sbjct: 278 QNEEECTVPTLGHYGAYCCEDLP 300

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  106 bits (268), Expect = 2e-25
 Identities = 44/255 (17%), Positives = 86/255 (33%), Gaps = 23/255 (9%)

Query: 248 IDLSLPNVETLNLGINSFSGTIPSSITNSSKLSDLELGENLFSGFIPNTIGNLRNLEFGN 307
           I  +    +   +  +S    + S   ++  + +L+L  N  S      +     LE  N
Sbjct: 5   IKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLN 64

Query: 308 IADNYLTSSTPELSFLSSLT-------------NCKKLKVLIVTGNPLDGILPKSIGNFS 354
           ++ N L  +  +L  LS+L                  ++ L    N +  +   S G   
Sbjct: 65  LSSNVLYET-LDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRV-SCSRGQ-- 120

Query: 355 LSLETILMANCSISGNIPQVVGNLSNLLVLELGGNNLTG-PIPVTFSQLQTLQAFDLTRN 413
              + I +AN  I+       G  S +  L+L  N +         +   TL+  +L  N
Sbjct: 121 -GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179

Query: 414 KLAGPITDELCHLARLHSLVLQGNKFSGSIPSCLGNLTSVRVLYLGLNIFTSVLSSTIWN 473
            +           A+L +L L  NK +  +     +   V  + L  N     +   +  
Sbjct: 180 FIY--DVKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVL-IEKALRF 235

Query: 474 LKDILFIDVSSNFLD 488
            +++   D+  N   
Sbjct: 236 SQNLEHFDLRGNGFH 250

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 66.6 bits (163), Expect = 7e-12
 Identities = 22/150 (14%), Positives = 53/150 (35%), Gaps = 10/150 (6%)

Query: 371 IPQVVGNLSNLLVLELGGNNLTGPIPVTFSQLQTLQAFDLTRNKLAGPITDELCHLARLH 430
           I ++  N +   + ++  ++L   +         ++  DL+ N L+     +L    +L 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 431 SLVLQGNKFSGSIPSCLGNLTSVRVLYLGLNIFTSVLSSTIWNLKDILFIDVSSNFLDGP 490
            L L  N         L +L+++R L L  N         +     I  +  ++N +   
Sbjct: 62  LLNLSSNVLY-ETLD-LESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAANNNIS-- 112

Query: 491 LSLDIGNLKVVIGLDFSRNNLSGDIPITIG 520
             +     +    +  + N ++    +  G
Sbjct: 113 -RVSCSRGQGKKNIYLANNKITMLRDLDEG 141

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  119 bits (299), Expect = 1e-28
 Identities = 76/433 (17%), Positives = 156/433 (36%), Gaps = 60/433 (13%)

Query: 57  LNISSFNLQGTITPQLGNLSSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQLFGSL 116
              ++F +Q T T     L++L +LD  ++ ++    + I  +  L  L  + N +  +L
Sbjct: 23  EVAAAFEMQATDTISEEQLATLTSLDCHNSSITD--MTGIEKLTGLTKLICTSNNI-TTL 79

Query: 117 SSFIFNMSSMTTIDLSINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEIG 176
              +   +++T +    N+L+  L          ++   +L  LN   N L+     ++ 
Sbjct: 80  D--LSQNTNLTYLACDSNKLT-NLD---------VTPLTKLTYLNCDTNKLT---KLDVS 124

Query: 177 NLTKLKEIISTITNSTVCEIPREIGNLPYLARLALATNNLVGVVPVTIFNMSALKEISLL 236
               L  +      +T+ EI   + +   L  L    N  +  + VT    + L  +   
Sbjct: 125 QNPLLTYLN--CARNTLTEID--VSHNTQLTELDCHLNKKITKLDVT--PQTQLTTLDCS 178

Query: 237 NNSLSGSLPSRIDLS-LPNVETLNLGINSFSGTIPSSITNSSKLSDLELGENLFSGFIPN 295
            N ++      +D+S    +  LN   N+ +  +   +  + +L+ L+   N  +     
Sbjct: 179 FNKITE-----LDVSQNKLLNRLNCDTNNIT-KLD--LNQNIQLTFLDCSSNKLTEI--- 227

Query: 296 TIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGILPKSIGNFSL 355
            +  L  L + + + N LT           ++   KL  L      L  I    + + + 
Sbjct: 228 DVTPLTQLTYFDCSVNPLTE--------LDVSTLSKLTTLHCIQTDLLEI---DLTHNT- 275

Query: 356 SLETILMANCSISGNIPQVVGNLSNLLVLELGGNNLTGPIPVTFSQLQTLQAFDLTRNKL 415
            L       C     +   V + + L +L+     +T    +  SQ   L    L   +L
Sbjct: 276 QLIYFQAEGCRKIKELD--VTHNTQLYLLDCQAAGIT---ELDLSQNPKLVYLYLNNTEL 330

Query: 416 AGPITDELCHLARLHSLVLQGNKFSGSIPSCLGNLTSVRVLYLGLNIFTSVLSSTIWNLK 475
                 ++ H  +L SL            S +G + ++   +       ++   T+ N  
Sbjct: 331 T---ELDVSHNTKLKSLSCVNAHIQ-DFSS-VGKIPALNNNFEAEGQTITMPKETLTNNS 385

Query: 476 DILFIDVSSNFLD 488
             L I VS + LD
Sbjct: 386 --LTIAVSPDLLD 396

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  100 bits (251), Expect = 2e-22
 Identities = 59/432 (13%), Positives = 141/432 (32%), Gaps = 63/432 (14%)

Query: 98  NMHTLKLLDFSDNQLFGSLSSFIFNMSSMTTIDLSINRLSGELPANICKIPSTLSKCKQL 157
           N  +     F         +     ++++T++D   + ++ ++          + K   L
Sbjct: 19  NFASEVAAAFEMQAT---DTISEEQLATLTSLDCHNSSIT-DMTG--------IEKLTGL 66

Query: 158 EELNLGFNNLSGAIPKEIGNLTKLKEIISTITNSTVCEIPREIGNLPYLARLALATNNLV 217
            +L    NN++     ++   T L  +     ++ +  +   +  L  L  L   TN L 
Sbjct: 67  TKLICTSNNITTL---DLSQNTNLTYLA--CDSNKLTNLD--VTPLTKLTYLNCDTNKL- 118

Query: 218 GVVPVTIFNMSALKEISLLNNSLSGSLPSRIDLS-LPNVETLNLGINSFSGTIPSSITNS 276
               + +     L  ++   N+L     + ID+S    +  L+  +N     +   +T  
Sbjct: 119 --TKLDVSQNPLLTYLNCARNTL-----TEIDVSHNTQLTELDCHLNKKITKLD--VTPQ 169

Query: 277 SKLSDLELGENLFSGFIPNTIGNLRNLEFGNIADNYLT----SSTPELSFLS-------- 324
           ++L+ L+   N  +      +   + L   N   N +T    +   +L+FL         
Sbjct: 170 TQLTTLDCSFNKITEL---DVSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLTE 226

Query: 325 -SLTNCKKLKVLIVTGNPLDGILPKSIGNFSLSLETILMANCSISGNIPQVVGNLSNLLV 383
             +T   +L     + NPL  +    +   S  L T+      +   I   + + + L+ 
Sbjct: 227 IDVTPLTQLTYFDCSVNPLTEL---DVSTLS-KLTTLHCIQTDLL-EID--LTHNTQLIY 279

Query: 384 LELGGNNLTGPIPVTFSQLQTLQAFDLTRNKLAGPITDELCHLARLHSLVLQGNKFSGSI 443
            +  G      +    +    L   D     +      +L    +L  L L   + +  +
Sbjct: 280 FQAEGCRKIKELD--VTHNTQLYLLDCQAAGIT---ELDLSQNPKLVYLYLNNTELT-EL 333

Query: 444 PSCLGNLTSVRVLYLGLNIFTSVLSSTIWNLKDILFIDVSSNFLDGPLSLDIGNLKVVIG 503
              + + T ++ L            S++  +  +     +           + N  + I 
Sbjct: 334 D--VSHNTKLKSLSCVNAHIQDF--SSVGKIPALNNNFEAEGQTITMPKETLTNNSLTIA 389

Query: 504 LDFSRNNLSGDI 515
           +     +  G+ 
Sbjct: 390 VSPDLLDQFGNP 401

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 94.4 bits (235), Expect = 2e-20
 Identities = 62/336 (18%), Positives = 118/336 (35%), Gaps = 37/336 (11%)

Query: 63  NLQGTITPQLGNLSSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQLFGSLSSFIFN 122
             +      +   + L TLD S NK++      +     L  L+   N +   L   +  
Sbjct: 157 LNKKITKLDVTPQTQLTTLDCSFNKITE---LDVSQNKLLNRLNCDTNNIT-KLD--LNQ 210

Query: 123 MSSMTTIDLSINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEIGNLTKLK 182
              +T +D S N+L+ E+          ++   QL   +   N L+  +   +  L+KL 
Sbjct: 211 NIQLTFLDCSSNKLT-EID---------VTPLTQLTYFDCSVNPLT-ELD--VSTLSKLT 257

Query: 183 EIISTITNSTVCEIPREIGNLPYLARLALATNNLVGVVPVTIFNMSALKEISLLNNSLSG 242
            +    T+    EI   + +   L          +  + VT  + + L  +      ++ 
Sbjct: 258 TLHCIQTDLL--EID--LTHNTQLIYFQAEGCRKIKELDVT--HNTQLYLLDCQAAGIT- 310

Query: 243 SLPSRIDLS-LPNVETLNLGINSFSGTIPSSITNSSKLSDLELGENLFSGFIPNTIGNLR 301
                +DLS  P +  L L     +  +   +++++KL  L         F  +++G + 
Sbjct: 311 ----ELDLSQNPKLVYLYLNNTELT-ELD--VSHNTKLKSLSCVNAHIQDF--SSVGKIP 361

Query: 302 NLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGILPKSIGNFSLSLETIL 361
            L     A+    +   E    +SLT      +L   GNP++ I P   G +  +  TI 
Sbjct: 362 ALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNPMN-IEPGDGGVYDQATNTIT 420

Query: 362 MANCSISGNIPQVVGNLSNLLVLELGGNNLTGPIPV 397
             N S             N  ++         P P+
Sbjct: 421 WENLSTDNPAVTYTFTSENGAIVGTVTTPFEAPQPI 456

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 83.6 bits (207), Expect = 5e-17
 Identities = 54/380 (14%), Positives = 123/380 (32%), Gaps = 47/380 (12%)

Query: 140 LPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEIGNLTKLKEIISTITNSTVCEIPRE 199
           L A   +  +                 +          L  L  +     NS++ ++   
Sbjct: 3   LKAGQTQSFNDWFPDDNFASEVAAAFEMQATDTISEEQLATLTSL--DCHNSSITDMT-G 59

Query: 200 IGNLPYLARLALATNNLVGVVPVTIFNMSALKEISLLNNSLSGSLPSRIDLS-LPNVETL 258
           I  L  L +L   +NN+     + +   + L  ++  +N L     + +D++ L  +  L
Sbjct: 60  IEKLTGLTKLICTSNNITT---LDLSQNTNLTYLACDSNKL-----TNLDVTPLTKLTYL 111

Query: 259 NLGINSFSGTIPSSITNSSKLSDLELGENLFSGFIPNTIGNLRNLEFGNIADNYLTSSTP 318
           N   N  +      ++ +  L+ L    N  +      + +   L   +   N   +   
Sbjct: 112 NCDTNKLT---KLDVSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKLD 165

Query: 319 ELSFLSSLTNCKKLKVLIVTGNPLDGILPKSIGNFSLSLETILMANCSISGNIPQVVGNL 378
                  +T   +L  L  + N +  +    +      L  +     +I+  +   +   
Sbjct: 166 -------VTPQTQLTTLDCSFNKITEL---DVSQNK-LLNRLNCDTNNIT-KLD--LNQN 211

Query: 379 SNLLVLELGGNNLTGPIPVTFSQLQTLQAFDLTRNKLAGPITDELCHLARLHSLVLQGNK 438
             L  L+   N LT    +  + L  L  FD + N L      ++  L++L +L      
Sbjct: 212 IQLTFLDCSSNKLTE---IDVTPLTQLTYFDCSVNPL---TELDVSTLSKLTTLHCIQTD 265

Query: 439 FSGSIPSCLGNLTSVRVLYLGLNIFTSVLSSTIWNLKDILFIDVSSNFLDGPLSLDIGNL 498
               I   L + T +             L   + +   +  +D  +  +     LD+   
Sbjct: 266 LL-EID--LTHNTQLIYFQAEGCRKIKEL--DVTHNTQLYLLDCQAAGIT---ELDLSQN 317

Query: 499 KVVIGLDFSRNNLSGDIPIT 518
             ++ L  +   L+ ++ ++
Sbjct: 318 PKLVYLYLNNTELT-ELDVS 336

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 2qlu_A* Length = 322

 Score =  114 bits (288), Expect = 4e-28
 Identities = 44/217 (20%), Positives = 69/217 (31%), Gaps = 73/217 (33%)

Query: 618 FSYHELLRATDRFSENNLIGIG----------NGMEVAVKVFHQQYERALKSFEDECEVR 667
                L   +       +   G              VAVK+F  Q ++   S+++E EV 
Sbjct: 14  LGTENLYFQSMPLQLLEVKARGRFGCVWKAQLLNEYVAVKIFPIQDKQ---SWQNEYEVY 70

Query: 668 --KRIRHRNLVKIISSS------------------------------------------- 682
               ++H N+++ I +                                            
Sbjct: 71  SLPGMKHENILQFIGAEKRGTSVDVDLWLITAFHEKGSLSDFLKANVVSWNELCHIAETM 130

Query: 683 ---LEYLH-------FGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQ 732
              L YLH        GH   I H D+K  NVLL  ++ A I+DFG+A            
Sbjct: 131 ARGLAYLHEDIPGLKDGHKPAISHRDIKSKNVLLKNNLTACIADFGLALKFEAGKSAGDT 190

Query: 733 TQTLATIGYMAPEY-----GTKGRVSTRGDVCSFGII 764
              + T  YMAPE        +     R D+ + G++
Sbjct: 191 HGQVGTRRYMAPEVLEGAINFQRDAFLRIDMYAMGLV 227

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  117 bits (295), Expect = 8e-28
 Identities = 88/453 (19%), Positives = 166/453 (36%), Gaps = 44/453 (9%)

Query: 57  LNISSFNLQGTITPQLGNLSSLQTLDLSHNKLSGNIPSSIF-NMHTLKLLDFSDNQLFGS 115
           LNIS   +    T  + +LS L+ L +SHN++   +  S+F     L+ LD S N+L   
Sbjct: 26  LNISQNYISELWTSDILSLSKLRILIISHNRIQ-YLDISVFKFNQELEYLDLSHNKL-VK 83

Query: 116 LSSFIFNMSSMTTIDLSINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEI 175
           +S       ++  +DLS N     LP     I        QL+ L L   +L  +    I
Sbjct: 84  ISC--HPTVNLKHLDLSFNAFD-ALP-----ICKEFGNMSQLKFLGLSTTHLEKSSVLPI 135

Query: 176 GNLTKLKEIISTITNSTVCEIPREIGNLPYLARLALATNNLVGVVPVTIFNMSALKEISL 235
            +L   K ++         E   +   L      +L            I ++S     +L
Sbjct: 136 AHLNISKVLLVLGETYGEKE---DPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANL 192

Query: 236 LNNSLSGSLPSRI------------------DLSLPNVETLNLGINSFSGTIPSSITNSS 277
             +++   L                      +L+L N+ET           +  +     
Sbjct: 193 ELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYF 252

Query: 278 KLSDLELGENLFSGFIPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIV 337
            +S+++L   L       +  +L+ L    +  +          +    +N   + +   
Sbjct: 253 SISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFP-QSYIYE-IFSN---MNIKNF 307

Query: 338 TGNPLDGILPKSIGNFSLSLETILMANCSISGNIPQVVGNLSNLLVLELGGNNLT--GPI 395
           T +    +        S     +  +N  ++  + +  G+L+ L  L L  N L     I
Sbjct: 308 TVSGTRMVHMLCPSKIS-PFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKI 366

Query: 396 PVTFSQLQTLQAFDLTRNKLAGPITDELC-HLARLHSLVLQGNKFSGSIPSCLGNLTSVR 454
               +Q+++LQ  D+++N ++       C     L SL +  N  + +I  CL     ++
Sbjct: 367 AEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIK 424

Query: 455 VLYLGLNIFTSVLSSTIWNLKDILFIDVSSNFL 487
           VL L  N   S +   +  L+ +  ++V+SN L
Sbjct: 425 VLDLHSNKIKS-IPKQVVKLEALQELNVASNQL 456

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 93.0 bits (231), Expect = 8e-20
 Identities = 73/450 (16%), Positives = 147/450 (32%), Gaps = 75/450 (16%)

Query: 80  TLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQLFGSLSSFIFNMSSMTTIDLSINRLSGE 139
            +D S N L  ++P  +       +L+ S N +    +S I ++S +  + +S NR+   
Sbjct: 4   LVDRSKNGLI-HVPKDLSQ--KTTILNISQNYISELWTSDILSLSKLRILIISHNRIQ-Y 59

Query: 140 LPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEIGNLTKLKEI------ISTITNSTV 193
           L  ++ K        ++LE L+L  N L   I         LK +         +     
Sbjct: 60  LDISVFK------FNQELEYLDLSHNKLV-KIS--CHPTVNLKHLDLSFNAFDALP---- 106

Query: 194 CEIPREIGNLPYLARLALATNNLVGVVPVTIFNMSALKEISLLNNSLSGSLPSRIDLSLP 253
             I +E GN+  L  L L+T +L     + I +++  K + +L  +            L 
Sbjct: 107 --ICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDP---EGLQ 161

Query: 254 NVETLNLGINSFSGTIPSSITNSSKLSDLELGENLFSGFIPNTIGNLRNLEFGNIADNYL 313
           +  T +L I   +      I + S  +   L            + N++ +   N    +L
Sbjct: 162 DFNTESLHIVFPTNKEFHFILDVSVKTVANL-----------ELSNIKCVLEDNKCSYFL 210

Query: 314 TSSTPELSFLSSLTNCKKLKVLIVTGNPLDGILPKSIGNFSLSLETILMANCSISGNIPQ 373
                  S L+ L    KL  L +            I                       
Sbjct: 211 -------SILAKLQTNPKLSNLTLNNIETTWNSFIRILQLV------------------- 244

Query: 374 VVGNLSNLLVLELGGNNLTGPI-----PVTFSQLQTLQAFDLTRNKLAGPITDELCHLAR 428
                + +    +    L G +       + + L+ L    +  +    P +      + 
Sbjct: 245 ---WHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSN 301

Query: 429 LHSLVLQGNKFSGSIPSCLGNLTSVRVLYLGLNIFTSVLSSTIWNLKDILFIDVSSNFLD 488
           ++      +        C   ++    L    N+ T  +     +L ++  + +  N L 
Sbjct: 302 MNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK 361

Query: 489 --GPLSLDIGNLKVVIGLDFSRNNLSGDIP 516
               ++     +K +  LD S+N++S D  
Sbjct: 362 ELSKIAEMTTQMKSLQQLDISQNSVSYDEK 391

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 79.9 bits (197), Expect = 1e-15
 Identities = 46/307 (14%), Positives = 112/307 (36%), Gaps = 24/307 (7%)

Query: 27  NLFARNWTSSTSVCIWIGITCDVNSHRVIGLNISSFNLQGTITPQLGNLSSLQTLDLSHN 86
            L     +   S+   +     +++  +  +  +  +       QL   +++    +S+ 
Sbjct: 200 VLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSF--IRILQLVWHTTVWYFSISNV 257

Query: 87  KLSGNIPSSIF-----NMHTLKLLDFSDNQLFGSLSSFIFNMSSMTTIDLSINRLSGELP 141
           KL G +    F     ++  L +     +      S      S+M   + +++     + 
Sbjct: 258 KLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTR-MVH 316

Query: 142 ANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEIGNLTKLKEIISTITNSTVCEIPREIG 201
                     SK      L+   N L+  + +  G+LT+L+ +I  +  + + E+ +   
Sbjct: 317 MLCP------SKISPFLHLDFSNNLLTDTVFENCGHLTELETLI--LQMNQLKELSKIAE 368

Query: 202 ---NLPYLARLALATNNLVGVVPVTIF-NMSALKEISLLNNSLSGSLPSRIDLSLPNVET 257
               +  L +L ++ N++             +L  +++ +N L+ ++   +    P ++ 
Sbjct: 369 MTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL---PPRIKV 425

Query: 258 LNLGINSFSGTIPSSITNSSKLSDLELGENLFSGFIPNTIGNLRNLEFGNIADNYLTSST 317
           L+L  N    +IP  +     L +L +  N            L +L+   +  N    S 
Sbjct: 426 LDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 484

Query: 318 PELSFLS 324
           P + +LS
Sbjct: 485 PRIDYLS 491

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} PDB: 3c4c_A* 3c4d_A* 3idp_A* 3ii5_A* 3d4q_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 2fb8_A* 4dbn_A* 1uwj_A* 1uwh_A* 3q96_A* Length = 289

 Score =  113 bits (284), Expect = 9e-28
 Identities = 46/167 (27%), Positives = 70/167 (41%), Gaps = 45/167 (26%)

Query: 643 EVAVKVFHQQY--ERALKSFEDECEVRKRIRHRNLVK-----------II------SSSL 683
           +VAVK+ +      + L++F++E  V ++ RH N++            I+      SS  
Sbjct: 48  DVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTAPQLAIVTQWCEGSSLY 107

Query: 684 EYLH-------------------FG----HSIPIIHCDLKPSNVLLDEDMVAHISDFGIA 720
            +LH                    G    H+  IIH DLK +N+ L ED    I DFG+A
Sbjct: 108 HHLHASETKFEMKKLIDIARQTARGMDYLHAKSIIHRDLKSNNIFLHEDNTVKIGDFGLA 167

Query: 721 KLLSGEDQLSKQTQTLATIGYMAPE---YGTKGRVSTRGDVCSFGII 764
              S      +  Q   +I +MAPE          S + DV +FGI+
Sbjct: 168 TEKSRWSGSHQFEQLSGSILWMAPEVIRMQDSNPYSFQSDVYAFGIV 214

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A* Length = 309

 Score =  109 bits (274), Expect = 3e-26
 Identities = 43/176 (24%), Positives = 68/176 (38%), Gaps = 51/176 (28%)

Query: 637 GIGNGMEVAVKVFHQQY--ERALKSFEDECEVRKRIRHRNLVK------------IIS-- 680
              +G +VAVK+  +Q      +  F  E  + KR+RH N+V             I++  
Sbjct: 56  AEWHGSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVLFMGAVTQPPNLSIVTEY 115

Query: 681 ---SSL-----------------------------EYLHFGHSIPIIHCDLKPSNVLLDE 708
               SL                              YLH   + PI+H +LK  N+L+D+
Sbjct: 116 LSRGSLYRLLHKSGAREQLDERRRLSMAYDVAKGMNYLH-NRNPPIVHRNLKSPNLLVDK 174

Query: 709 DMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
                + DFG+++L +             T  +MAPE       + + DV SFG+I
Sbjct: 175 KYTVKVCDFGLSRLKA--STFLSSKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVI 228

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  109 bits (275), Expect = 1e-25
 Identities = 67/419 (15%), Positives = 128/419 (30%), Gaps = 52/419 (12%)

Query: 76  SSLQTLDLSHNKLSGNIPSSIF-NMHTLKLLDFSDNQLFGSLSSFIF-NMSSMTTIDLSI 133
           + +  +DLS N ++  +  + F  +  L+ L          + +  F  +SS+  + L  
Sbjct: 30  AHVNYVDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88

Query: 134 NRLSGELPANICKIPSTLSKCKQLEELNLGFNNL-SGAIPKEI-GNLTKLKEIISTITNS 191
           N+   +L           +    LE L L   NL    +       LT L+         
Sbjct: 89  NQFL-QLE------TGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEM-------- 133

Query: 192 TVCEIPREIGNLPYLARLALATNNLVGVVPVTIF-NMSALKEISLLNNSLSGSLPSRI-- 248
                            L L  NN+  + P + F NM     + L  N +  S+      
Sbjct: 134 -----------------LVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK-SICEEDLL 175

Query: 249 DLSLPNVETLNLGINSFSGTIPSSITNSSKLSDLELGENLFSGFIPNTIGNLRNLEFGNI 308
           +    +   L L           ++ + ++                 T  +L    F   
Sbjct: 176 NFQGKHFTLLRLSSI--------TLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKES 227

Query: 309 ADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGILPKS-IGNFSLSLETILMANCSI 367
                  +       S + +                    +  G  +  ++T  ++   I
Sbjct: 228 MAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKI 287

Query: 368 SGNIPQVVGNLSNLLVLELGGNNLTGPIPVTFSQLQTLQAFDLTRNKLAGPITDELCHLA 427
              +  V  + ++L  L L  N +       F  L  L   +L++N L    +    +L 
Sbjct: 288 FALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLD 347

Query: 428 RLHSLVLQGNKFSGSIPSCL-GNLTSVRVLYLGLNIFTSVLSSTIWNLKDILFIDVSSN 485
           +L  L L  N    ++       L +++ L L  N   SV       L  +  I + +N
Sbjct: 348 KLEVLDLSYNHIR-ALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  102 bits (256), Expect = 3e-23
 Identities = 70/421 (16%), Positives = 132/421 (31%), Gaps = 73/421 (17%)

Query: 61  SFNLQGTITPQ-LGNLSSLQTLDLSHNKLSGNIPSSIF-NMHTLKLLDFSDNQLFGSLSS 118
           S N    +       L  LQ L +        I ++ F  + +L +L    NQ    L +
Sbjct: 38  SLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF-LQLET 96

Query: 119 FIF-NMSSMTTIDLSINRL-SGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEI- 175
             F  ++++  + L+   L    L  N             LE L L  NN+    P    
Sbjct: 97  GAFNGLANLEVLTLTQCNLDGAVLSGNF------FKPLTSLEMLVLRDNNIKKIQPASFF 150

Query: 176 GNLTKLKEI------ISTITNST---VCEIPREIGNLPYLARLALATNNLVGVVPVTIFN 226
            N+ +   +      + +I              +  L  +    +    L        F 
Sbjct: 151 LNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFK 210

Query: 227 MSALKEISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSITNSSKLSDLELGE 286
            +++  + L  N    S+  R   ++   +  +L +++                      
Sbjct: 211 NTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNS--------------------Y 250

Query: 287 NLFSGFIPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSL-----TNCKKLKVLIVTGNP 341
           N+ S F      +  N  F  +  + + +     S + +L     ++   L+ L +  N 
Sbjct: 251 NMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNE 310

Query: 342 LDGILPKSIGNFSLSLETILMANCSISGNIPQVVGNLSNLLVLELGGNNLTGPIPVTFSQ 401
           ++             ++                   L++LL L L  N L       F  
Sbjct: 311 IN------------KID-------------DNAFWGLTHLLKLNLSQNFLGSIDSRMFEN 345

Query: 402 LQTLQAFDLTRNKLAGPITDELCHLARLHSLVLQGNKFSGSIPS-CLGNLTSVRVLYLGL 460
           L  L+  DL+ N +          L  L  L L  N+   S+P      LTS++ ++L  
Sbjct: 346 LDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHT 404

Query: 461 N 461
           N
Sbjct: 405 N 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 83.6 bits (207), Expect = 5e-17
 Identities = 57/340 (16%), Positives = 113/340 (33%), Gaps = 40/340 (11%)

Query: 204 PYLARLALATNNLVGVVPVTIFNMSALKEISLLNNSLSGSLPSRIDLSLPNVETLNLGIN 263
            ++  + L+ N++  +   +   +  L+ + +   +    + +     L ++  L L  N
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 264 SFSGTIPSSI-TNSSKLSDLELGEN-LFSGFIPNTI-GNLRNLEFGNIADNYLTSSTPEL 320
            F   + +      + L  L L +  L    +       L +LE   + DN +    P  
Sbjct: 90  QFL-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPAS 148

Query: 321 SFLSSLTNCKKLKVLIVTGNPLDGILPKSIGNFSLSLETIL---------MANCSISGNI 371
            F  ++       VL +T N +  I  + + NF     T+L         M    +    
Sbjct: 149 FF-LNMRR---FHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEK 204

Query: 372 PQVVGNLSNLLVLELGGNNLTGPIPVTFSQLQTLQAF-------------DLTRNKLAGP 418
                  +++  L+L GN     +   F                               P
Sbjct: 205 CGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDP 264

Query: 419 ITDELCHLAR--LHSLVLQGNKFSGSIPSCL-GNLTSVRVLYLGLNIFTSVLSSTIWNLK 475
                  L    + +  L  +K   ++   +  + T +  L L  N    +  +  W L 
Sbjct: 265 DNFTFKGLEASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLT 323

Query: 476 DILFIDVSSNFLDGPLSLDIG---NLKVVIGLDFSRNNLS 512
            +L +++S NFL    S+D     NL  +  LD S N++ 
Sbjct: 324 HLLKLNLSQNFLG---SIDSRMFENLDKLEVLDLSYNHIR 360

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 70.9 bits (174), Expect = 6e-13
 Identities = 54/272 (19%), Positives = 96/272 (35%), Gaps = 24/272 (8%)

Query: 74  NLSSLQTLDLSHNKLSGNIPSSIF-----------NMHTLKLLDFSDNQLFGSLSSFIFN 122
           N+     LDL+ NK+  +I                 + ++ L D ++  L        F 
Sbjct: 152 NMRRFHVLDLTFNKVK-SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFK 210

Query: 123 MSSMTTIDLSINRLSGELPANIC------KIPSTLSKCKQLEELNLGFNNLSGAIPKEIG 176
            +S+TT+DLS N     +           KI S +         + G  N          
Sbjct: 211 NTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFK 270

Query: 177 NLTKLKEIISTITNSTVCEIPREI-GNLPYLARLALATNNLVGVVPVTIF-NMSALKEIS 234
            L         ++ S +  + + +  +   L +L LA N +   +    F  ++ L +++
Sbjct: 271 GLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLN 329

Query: 235 LLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSI-TNSSKLSDLELGENLFSGFI 293
           L  N L  S+ SR+  +L  +E L+L  N     +          L +L L  N      
Sbjct: 330 LSQNFLG-SIDSRMFENLDKLEVLDLSYNHIR-ALGDQSFLGLPNLKELALDTNQLKSVP 387

Query: 294 PNTIGNLRNLEFGNIADNYLTSSTPELSFLSS 325
                 L +L+   +  N    S P + +LS 
Sbjct: 388 DGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSR 419

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 68.2 bits (167), Expect = 4e-12
 Identities = 49/227 (21%), Positives = 91/227 (40%), Gaps = 30/227 (13%)

Query: 57  LNISSFNLQGTITPQLGNLSSLQTLDLSHNKLSGNIPSSIFN-MHTLKLLDFSDNQLFGS 115
            +++ + L           +S+ TLDLS N    ++    F+ +   K+     +  +  
Sbjct: 193 QDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNM 252

Query: 116 LSSFIFN--------------MSSMTTIDLSINRLSGELPANICKIPSTLSKCKQLEELN 161
            SSF                  S + T DLS +++   L  ++       S    LE+L 
Sbjct: 253 GSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIF-ALLKSVF------SHFTDLEQLT 305

Query: 162 LGFNNLSGAIPKEI-GNLTKLKEIISTITNSTVCEIPREI-GNLPYLARLALATNNLVGV 219
           L  N ++  I       LT L ++   ++ + +  I   +  NL  L  L L+ N++   
Sbjct: 306 LAQNEIN-KIDDNAFWGLTHLLKL--NLSQNFLGSIDSRMFENLDKLEVLDLSYNHI-RA 361

Query: 220 VPVTIF-NMSALKEISLLNNSLSGSLPSRIDLSLPNVETLNLGINSF 265
           +    F  +  LKE++L  N L  S+P  I   L +++ + L  N +
Sbjct: 362 LGDQSFLGLPNLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPW 407

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens} Length = 336

 Score =  105 bits (264), Expect = 7e-25
 Identities = 47/225 (20%), Positives = 68/225 (30%), Gaps = 81/225 (36%)

Query: 618 FSYHELLRATDRFSENNLIGIG----------NGMEVAVKVFHQQYERALKSFEDECEVR 667
            +  E     D      LIG G          +   VAVKVF     +   +F +E  + 
Sbjct: 3   AAASEPSLDLDNLKLLELIGRGRYGAVYKGSLDERPVAVKVFSFANRQ---NFINEKNIY 59

Query: 668 K--RIRHRNLVKIISSS------------------------------------------- 682
           +   + H N+ + I                                              
Sbjct: 60  RVPLMEHDNIARFIVGDERVTADGRMEYLLVMEYYPNGSLXKYLSLHTSDWVSSCRLAHS 119

Query: 683 ----LEYLH------FGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQ 732
               L YLH        +   I H DL   NVL+  D    ISDFG++  L+G   +   
Sbjct: 120 VTRGLAYLHTELPRGDHYKPAISHRDLNSRNVLVKNDGTCVISDFGLSMRLTGNRLVRPG 179

Query: 733 TQTLA------TIGYMAPEY-------GTKGRVSTRGDVCSFGII 764
            +  A      TI YMAPE                + D+ + G+I
Sbjct: 180 EEDNAAISEVGTIRYMAPEVLEGAVNLRDXESALKQVDMYALGLI 224

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens} Length = 307

 Score =  104 bits (262), Expect = 1e-24
 Identities = 44/173 (25%), Positives = 60/173 (34%), Gaps = 52/173 (30%)

Query: 637 GIGNGMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVKI------------------ 678
                 +VA+K    + ER  K+F  E     R+ H N+VK+                  
Sbjct: 27  AKWRAKDVAIKQIESESER--KAFIVELRQLSRVNHPNIVKLYGACLNPVCLVMEYAEGG 84

Query: 679 --------------------------ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDM-V 711
                                      S  + YLH      +IH DLKP N+LL     V
Sbjct: 85  SLYNVLHGAEPLPYYTAAHAMSWCLQCSQGVAYLHSMQPKALIHRDLKPPNLLLVAGGTV 144

Query: 712 AHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
             I DFG A  +      +  T    +  +MAPE       S + DV S+GII
Sbjct: 145 LKICDFGTACDIQ-----THMTNNKGSAAWMAPEVFEGSNYSEKCDVFSWGII 192

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  103 bits (259), Expect = 2e-24
 Identities = 57/272 (20%), Positives = 98/272 (36%), Gaps = 42/272 (15%)

Query: 76  SSLQTLDLSHNKLSGNIPSSIF-NMHTLKLLDFSDNQL-FGSLSSFIF-NMSSMTTIDLS 132
           SS   L+L  NKL  ++P  +F  +  L  L  S N L F    S      +S+  +DLS
Sbjct: 28  SSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86

Query: 133 INRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEIGNLTKLKEIISTITNST 192
            N +          + S     +QLE L+   +NL       +                 
Sbjct: 87  FNGVI--------TMSSNFLGLEQLEHLDFQHSNLKQMSEFSV----------------- 121

Query: 193 VCEIPREIGNLPYLARLALATNNLVGVVPVTIF-NMSALKEISLLNNSLSGSLPSRIDLS 251
                    +L  L  L ++  +   V    IF  +S+L+ + +  NS   +    I   
Sbjct: 122 -------FLSLRNLIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE 173

Query: 252 LPNVETLNLGINSFSGTIPSSITNSSKLSDLELGENLFSGFIPNTIGNLRNLEFGNIADN 311
           L N+  L+L         P++  + S L  L +  N F          L +L+  + + N
Sbjct: 174 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN 233

Query: 312 YLTSSTPELSFLSSLTNCKKLKVLIVTGNPLD 343
           ++ +S  +       ++   L  L +T N   
Sbjct: 234 HIMTS-KKQELQHFPSS---LAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 88.9 bits (221), Expect = 2e-19
 Identities = 53/241 (21%), Positives = 95/241 (39%), Gaps = 19/241 (7%)

Query: 57  LNISSFNLQGTITPQLGNLSSLQTLDLSHNKLS-GNIPSSIF-NMHTLKLLDFSDNQLFG 114
           L + S  LQ         L+ L  L LS N LS     S       +LK LD S N +  
Sbjct: 33  LELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGV-I 91

Query: 115 SLSSFIFNMSSMTTIDLSINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKE 174
           ++SS    +  +  +D   + L  ++        S     + L  L++   +        
Sbjct: 92  TMSSNFLGLEQLEHLDFQHSNLK-QMSE-----FSVFLSLRNLIYLDISHTHTR-VAFNG 144

Query: 175 I-GNLTKLKEI-ISTITNSTVCEIPREI-GNLPYLARLALATNNLVGVVPVTIFNMSALK 231
           I   L+ L+ + ++   NS       +I   L  L  L L+   L  + P    ++S+L+
Sbjct: 145 IFNGLSSLEVLKMA--GNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 202

Query: 232 EISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSI--TNSSKLSDLELGENLF 289
            +++ +N+   SL +     L +++ L+  +N    T          S L+ L L +N F
Sbjct: 203 VLNMSHNNFF-SLDTFPYKCLNSLQVLDYSLNHIM-TSKKQELQHFPSSLAFLNLTQNDF 260

Query: 290 S 290
           +
Sbjct: 261 A 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 84.7 bits (210), Expect = 5e-18
 Identities = 51/259 (19%), Positives = 100/259 (38%), Gaps = 14/259 (5%)

Query: 231 KEISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSITNSSKLSDLELGENL-- 288
            EI   +  L+ S+P+ I     +   L L  N             ++L+ L L  N   
Sbjct: 10  TEIRCNSKGLT-SVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLS 65

Query: 289 FSGFIPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGILPK 348
           F G    +     +L++ +++ N + + +     L  L        L    + L  +   
Sbjct: 66  FKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLE------HLDFQHSNLKQMSEF 119

Query: 349 SIGNFSLSLETILMANCSISGNIPQVVGNLSNLLVLELGGNN-LTGPIPVTFSQLQTLQA 407
           S+     +L  + +++         +   LS+L VL++ GN+     +P  F++L+ L  
Sbjct: 120 SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF 179

Query: 408 FDLTRNKLAGPITDELCHLARLHSLVLQGNKFSGSIPSCLGNLTSVRVLYLGLNIFTSVL 467
            DL++ +L          L+ L  L +  N F          L S++VL   LN   +  
Sbjct: 180 LDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSK 239

Query: 468 SSTIWNLKDIL-FIDVSSN 485
              + +    L F++++ N
Sbjct: 240 KQELQHFPSSLAFLNLTQN 258

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 83.9 bits (208), Expect = 9e-18
 Identities = 56/270 (20%), Positives = 96/270 (35%), Gaps = 35/270 (12%)

Query: 195 EIPREIGNLPYLARLALATNNLVGVVPVTIFNMSALKEISLLNNSLS-GSLPSRIDLSLP 253
            +P  I       RL L +N L  +       ++ L ++SL +N LS     S+ D    
Sbjct: 21  SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTT 78

Query: 254 NVETLNLGINSFSGTIPSSITNSSKLSDLELGENLFSGFIPNTI-GNLRNLEFGNIADNY 312
           +++ L+L  N    T+ S+     +L  L+   +        ++  +LRNL + +I+  +
Sbjct: 79  SLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 137

Query: 313 LTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGILPKSIGNFSLSLETILMANCSISGNIP 372
              +   +           L+VL + GN                              +P
Sbjct: 138 TRVAFNGI-----FNGLSSLEVLKMAGNSF------------------------QENFLP 168

Query: 373 QVVGNLSNLLVLELGGNNLTGPIPVTFSQLQTLQAFDLTRNKLAGPITDELCHLARLHSL 432
            +   L NL  L+L    L    P  F+ L +LQ  +++ N      T     L  L  L
Sbjct: 169 DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVL 228

Query: 433 VLQGNKFSGSIPSCLGNL-TSVRVLYLGLN 461
               N    S    L +  +S+  L L  N
Sbjct: 229 DYSLNHIMTSKKQELQHFPSSLAFLNLTQN 258

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 65.0 bits (159), Expect = 2e-11
 Identities = 36/185 (19%), Positives = 67/185 (36%), Gaps = 6/185 (3%)

Query: 332 LKVLIVTGNPLDGILPKSIGNFSLSLETILMANCSIS--GNIPQVVGNLSNLLVLELGGN 389
              L +  N L  +        +  L  + +++  +S  G   Q     ++L  L+L  N
Sbjct: 30  ATRLELESNKLQSLPHGVFDKLT-QLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88

Query: 390 NLTGPIPVTFSQLQTLQAFDLTRNKLAG-PITDELCHLARLHSLVLQGNKFSGSIPSCLG 448
            +   +   F  L+ L+  D   + L           L  L  L +       +      
Sbjct: 89  GVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN 147

Query: 449 NLTSVRVLYLGLNIFTSVLSSTIW-NLKDILFIDVSSNFLDGPLSLDIGNLKVVIGLDFS 507
            L+S+ VL +  N F       I+  L+++ F+D+S   L+        +L  +  L+ S
Sbjct: 148 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMS 207

Query: 508 RNNLS 512
            NN  
Sbjct: 208 HNNFF 212

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} Length = 271

 Score =  101 bits (254), Expect = 5e-24
 Identities = 38/182 (20%), Positives = 65/182 (35%), Gaps = 58/182 (31%)

Query: 637 GIGNGMEVAVKVFHQQ----YERALKSFEDECEVRKRIRHRNLVKI-------------- 678
               G EVAVK           + +++   E ++   ++H N++ +              
Sbjct: 26  AFWIGDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPNIIALRGVCLKEPNLCLVM 85

Query: 679 ----------------------------ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDM 710
                                       I+  + YLH    +PIIH DLK SN+L+ + +
Sbjct: 86  EFARGGPLNRVLSGKRIPPDILVNWAVQIARGMNYLHDEAIVPIIHRDLKSSNILILQKV 145

Query: 711 VAH--------ISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFG 762
                      I+DFG+A+      ++S          +MAPE       S   DV S+G
Sbjct: 146 ENGDLSNKILKITDFGLAREWHRTTKMS----AAGAYAWMAPEVIRASMFSKGSDVWSYG 201

Query: 763 II 764
           ++
Sbjct: 202 VL 203

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} PDB: 3kmw_A* 3rep_A* Length = 271

 Score =  100 bits (251), Expect = 1e-23
 Identities = 29/180 (16%), Positives = 53/180 (29%), Gaps = 60/180 (33%)

Query: 637 GIGNGMEVAVKVFHQQY--ERALKSFEDECEVRKRIRHRNLVKI---------------- 678
           G   G ++ VKV   +    R  + F +EC   +   H N++ +                
Sbjct: 29  GRWQGNDIVVKVLKVRDWSTRKSRDFNEECPRLRIFSHPNVLPVLGACQSPPAPHPTLIT 88

Query: 679 -------------------------------ISSSLEYLHFGHSIPIIHCDLKPSNVLLD 707
                                          ++  + +LH      I    L   +V++D
Sbjct: 89  HWMPYGSLYNVLHEGTNFVVDQSQAVKFALDMARGMAFLH-TLEPLIPRHALNSRSVMID 147

Query: 708 EDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPE---YGTKGRVSTRGDVCSFGII 764
           EDM A IS   +                +    ++APE      +       D+ SF ++
Sbjct: 148 EDMTARISMADVKFSFQ-------SPGRMYAPAWVAPEALQKKPEDTNRRSADMWSFAVL 200

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A* Length = 287

 Score = 98.9 bits (247), Expect = 5e-23
 Identities = 32/182 (17%), Positives = 59/182 (32%), Gaps = 62/182 (34%)

Query: 639 GNGMEVAVKVFHQQ-------YERALKSFEDECEVRKRIRHRNLVKI------------- 678
            +   VA+K                 + F+ E  +   + H N+VK+             
Sbjct: 42  KDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPNIVKLYGLMHNPPRMVME 101

Query: 679 -----------------------------ISSSLEYLHFGHSIPIIHCDLKPSNVLLDE- 708
                                        I+  +EY+    + PI+H DL+  N+ L   
Sbjct: 102 FVPCGDLYHRLLDKAHPIKWSVKLRLMLDIALGIEYMQ-NQNPPIVHRDLRSPNIFLQSL 160

Query: 709 ----DMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPE--YGTKGRVSTRGDVCSFG 762
                + A ++DFG+++           +  L    +MAPE     +   + + D  SF 
Sbjct: 161 DENAPVCAKVADFGLSQQSV-----HSVSGLLGNFQWMAPETIGAEEESYTEKADTYSFA 215

Query: 763 II 764
           +I
Sbjct: 216 MI 217

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens} Length = 319

 Score = 99.4 bits (248), Expect = 8e-23
 Identities = 40/177 (22%), Positives = 64/177 (36%), Gaps = 56/177 (31%)

Query: 643 EVAVKVFHQQY--ERALKSFEDECEVRKRIRHRNLVK------------IISS-----SL 683
           EVA+++   +   E  LK+F+ E    ++ RH N+V             II+S     +L
Sbjct: 57  EVAIRLIDIERDNEDQLKAFKREVMAYRQTRHENVVLFMGACMSPPHLAIITSLCKGRTL 116

Query: 684 -EYLH-------------------FG----HSIPIIHCDLKPSNVLLDEDMVAHISDFGI 719
              +                     G    H+  I+H DLK  NV  D   V  I+DFG+
Sbjct: 117 YSVVRDAKIVLDVNKTRQIAQEIVKGMGYLHAKGILHKDLKSKNVFYDNGKV-VITDFGL 175

Query: 720 AKLLSGEDQLSKQTQTLA---TIGYMAPE---------YGTKGRVSTRGDVCSFGII 764
             +        ++ +       + ++APE            K   S   DV + G I
Sbjct: 176 FSISGVLQAGRREDKLRIQNGWLCHLAPEIIRQLSPDTEEDKLPFSKHSDVFALGTI 232

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  100 bits (251), Expect = 3e-22
 Identities = 62/357 (17%), Positives = 109/357 (30%), Gaps = 100/357 (28%)

Query: 67  TITPQLGNLSSLQTLDLSHNKLSGNIPSSIF----NMHTLKLLDFSDNQLFGSLSSFIFN 122
           +I   + N  SL + +  +N +S    +  F          L   + N+    L   + N
Sbjct: 2   SIMLPINNNFSL-SQNSFYNTIS-GTYADYFSAWDKWEKQALPGENRNEAVSLLKECLIN 59

Query: 123 MSSMTTIDLSINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEIGNLTKLK 182
               + + L+   LS  LP N+           Q+  L +  N L  ++P+   +L  L 
Sbjct: 60  --QFSELQLNRLNLS-SLPDNLPP---------QITVLEITQNALI-SLPELPASLEYL- 105

Query: 183 EIISTITNSTVCEIPREIGNLPYLARLALATNNLVGVVPVTIFNMSALKEISLLNNSLSG 242
                                                                 +N LS 
Sbjct: 106 ---------------------------------------------------DACDNRLS- 113

Query: 243 SLPSRIDLSLPNVETLNLGINSFSGTIPSSITNSSKLSDLELGENLFSGFIPNTIGNLRN 302
           +LP        +++ L++  N  +  +P        L  +    N  +  +P    +L  
Sbjct: 114 TLPE----LPASLKHLDVDNNQLT-MLPELPAL---LEYINADNNQLT-MLPELPTSLEV 164

Query: 303 LEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGILPKSIGNFSLSLETILM 362
           L   ++ +N LT                 L+ L V+ N L+  LP        S ET + 
Sbjct: 165 L---SVRNNQLTFLPELPE---------SLEALDVSTNLLES-LPAVPVRNHHSEETEIF 211

Query: 363 ANCSISGN----IPQVVGNLSNLLVLELGGNNLTGPIPVTFSQLQTLQAFDLTRNKL 415
             C    N    IP+ + +L     + L  N L+  I  + SQ      +   R   
Sbjct: 212 FRCR--ENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYF 266

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 98.9 bits (246), Expect = 1e-21
 Identities = 48/262 (18%), Positives = 93/262 (35%), Gaps = 37/262 (14%)

Query: 57  LNISSFNL-QGTITPQLGNLSSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQLFGS 115
             +   N  +     +   ++    L L+   LS ++P ++     + +L+ + N L  S
Sbjct: 39  QALPGENRNEAVSLLKECLINQFSELQLNRLNLS-SLPDNLPP--QITVLEITQNAL-IS 94

Query: 116 LSSFIFNMSSMTTIDLSINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEI 175
           L       +S+  +D   NRLS  LP               L+ L++  N L+  +P+  
Sbjct: 95  LPELP---ASLEYLDACDNRLS-TLPELPA----------SLKHLDVDNNQLT-MLPELP 139

Query: 176 GNLTKLKEIISTITNSTVCEIPREIGNLPYLARLALATNNLVGVVPVTIFNMSALKEISL 235
             L  +        N+ +  +P    +   L  L++  N L   +P    +   L+ + +
Sbjct: 140 ALLEYIN-----ADNNQLTMLPELPTS---LEVLSVRNNQL-TFLPELPES---LEALDV 187

Query: 236 LNNSLSGSLPSRID--LSLPNVET-LNLGINSFSGTIPSSITNSSKLSDLELGENLFSGF 292
             N L  SLP+           E       N  +  IP +I +      + L +N  S  
Sbjct: 188 STNLLE-SLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSR 245

Query: 293 IPNTIGNLRNLEFGNIADNYLT 314
           I  ++         +    Y +
Sbjct: 246 IRESLSQQTAQPDYHGPRIYFS 267

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 90.4 bits (224), Expect = 6e-19
 Identities = 54/309 (17%), Positives = 99/309 (32%), Gaps = 63/309 (20%)

Query: 171 IPKEIGNLTKLKEIIS-TITNSTVCEIPREIGNLPYLARLALATNNLVGVVPVTIFNMSA 229
           I   I N   L +       + T  +           A      N  V ++   + N   
Sbjct: 3   IMLPINNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLIN--Q 60

Query: 230 LKEISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSITNSSKLSDLELGENLF 289
             E+ L   +LS SLP  +    P +  L +  N+   ++P    +   L  L+  +N  
Sbjct: 61  FSELQLNRLNLS-SLPDNL---PPQITVLEITQNALI-SLPELPAS---LEYLDACDNRL 112

Query: 290 SGFIPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGILPKS 349
           S  +P    +L++L   ++ +N LT      +          L+ +    N L   LP+ 
Sbjct: 113 S-TLPELPASLKHL---DVDNNQLTMLPELPA---------LLEYINADNNQLTM-LPEL 158

Query: 350 IGNFSLSLETILMANCSISGNIPQVVGNLSNLLVLELGGNNLTGPIPVTFSQLQTLQAFD 409
             +                            L VL +  N LT  +P     L+ L   D
Sbjct: 159 PTS----------------------------LEVLSVRNNQLTF-LPELPESLEAL---D 186

Query: 410 LTRNKLAGPITDELCHLARLHS----LVLQGNKFSGSIPSCLGNLTSVRVLYLGLNIFTS 465
           ++ N L   +                   + N+ +  IP  + +L     + L  N  +S
Sbjct: 187 VSTNLLES-LPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSS 244

Query: 466 VLSSTIWNL 474
            +  ++   
Sbjct: 245 RIRESLSQQ 253

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 81.6 bits (201), Expect = 3e-16
 Identities = 53/291 (18%), Positives = 97/291 (33%), Gaps = 39/291 (13%)

Query: 55  IGLNISSFNLQGTITPQLGNL----SSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDN 110
           +   I+   +       L +L    +SL+ LD   N+LS  +P    +   LK LD  +N
Sbjct: 78  LPPQITVLEITQN---ALISLPELPASLEYLDACDNRLS-TLPELPAS---LKHLDVDNN 130

Query: 111 QLFGSLSSFIFNMSSMTTIDLSINRLSGELPANICK-------------IPSTLSKCKQL 157
           QL   L       + +  I+   N+L+  LP                  +P        L
Sbjct: 131 QL-TMLPELP---ALLEYINADNNQLT-MLPELPTSLEVLSVRNNQLTFLPELPE---SL 182

Query: 158 EELNLGFNNLSGAIPKEIGNLTKLKEIISTITNST--VCEIPREIGNLPYLARLALATNN 215
           E L++  N L  ++P         +E           +  IP  I +L     + L  N 
Sbjct: 183 EALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNP 241

Query: 216 LVGVVPVTIFNMSALKEISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSITN 275
           L   +  ++   +A  +        S S   +  L  P  + +      F     S ++ 
Sbjct: 242 LSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVT---AWFPENKQSDVSQ 298

Query: 276 SSKLSDLELGENLFSGFIPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSL 326
                + E   N FS    + + +  +    +     + +   +LS  + L
Sbjct: 299 IWHAFEHEEHANTFS-AFLDRLSDTVSARNTSGFREQVAAWLEKLSASAEL 348

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 71.5 bits (175), Expect = 5e-13
 Identities = 49/277 (17%), Positives = 98/277 (35%), Gaps = 38/277 (13%)

Query: 240 LSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSITNSSKLSDLELGENLFSGFIPNTIGN 299
           +S  LP   + SL      N  I+       S+     K +      N     +   +  
Sbjct: 1   MSIMLPINNNFSLSQNSFYNT-ISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECL-- 57

Query: 300 LRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGILPKSIGNFSLSLET 359
           +       +    L+S    L          ++ VL +T N L   LP+   +    LE 
Sbjct: 58  INQFSELQLNRLNLSSLPDNL--------PPQITVLEITQNALI-SLPELPAS----LEY 104

Query: 360 ILMANCSISGNIPQVVGNLSNLLVLELGGNNLTGPIPVTFSQLQTLQAFDLTRNKLAGPI 419
           +   +  +S  +P++  +L +L   ++  N LT  +P   + L+ +   +   N+L   +
Sbjct: 105 LDACDNRLS-TLPELPASLKHL---DVDNNQLTM-LPELPALLEYI---NADNNQLTM-L 155

Query: 420 TDELCHLARLHSLVLQGNKFSGSIPSCLGNLTSVRVLYLGLNIFTSVLSSTIWNL----K 475
            +    L  L    ++ N+ +  +P    +L     L +  N+  S L +         +
Sbjct: 156 PELPTSLEVLS---VRNNQLT-FLPELPESL---EALDVSTNLLES-LPAVPVRNHHSEE 207

Query: 476 DILFIDVSSNFLDGPLSLDIGNLKVVIGLDFSRNNLS 512
             +F     N +   +  +I +L     +    N LS
Sbjct: 208 TEIFFRCRENRITH-IPENILSLDPTCTIILEDNPLS 243

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  100 bits (250), Expect = 3e-22
 Identities = 80/450 (17%), Positives = 157/450 (34%), Gaps = 54/450 (12%)

Query: 74  NLSSLQTLDLSHNKLSGNIPSSIF-NMHTLKLLDFSDNQLFGSLSSFIFNMSSMTTIDLS 132
            LS L+ L LSHN++  ++   +F     L+ LD S N+L  ++S      +S+  +DLS
Sbjct: 74  FLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNRL-QNISCCPM--ASLRHLDLS 129

Query: 133 INRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEIGNLTKLKEIISTITNST 192
            N     LP     +        +L  L L            + +L  L  I+  + +  
Sbjct: 130 FNDFD-VLP-----VCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHL-HLSCILLDLVSYH 182

Query: 193 VCEIPREIGNLPYLARLALATNNLVGVVPVTIFNMSALKEISLLNNSLSGS--------- 243
           +     E   +P    L L  +           +++AL  + L N  L+           
Sbjct: 183 IKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFL 242

Query: 244 -----LPSRIDLSLPNVETLNLGINSFSGTIPSSITNSSKLSDLELGENLFSGFIPNTIG 298
                 P+ ++++L ++ET                     + +L + E +       +  
Sbjct: 243 SELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSET 302

Query: 299 NLRNLEFGNIADNYLTSSTPEL-SFLSSLT------------------NCKKLKVLIVTG 339
            L++L   ++ +     S   L S  + +                   +      L  T 
Sbjct: 303 ALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQ 362

Query: 340 NPLDGILPKSIGNFSLSLETILMANCSISGNIPQVVGNLSNLLVLELGGNNLT----GPI 395
           N     + +        L+T+++    +  N  +V     N+  LE    +L        
Sbjct: 363 NVFTDSVFQGCSTLK-RLQTLILQRNGLK-NFFKVALMTKNMSSLETLDVSLNSLNSHAY 420

Query: 396 PVTFSQLQTLQAFDLTRNKLAGPITDELCHLARLHSLVLQGNKFSGSIPSCLGNLTSVRV 455
             T +  +++   +L+ N L G +   L    ++  L L  N+   SIP  + +L +++ 
Sbjct: 421 DRTCAWAESILVLNLSSNMLTGSVFRCL--PPKVKVLDLHNNRIM-SIPKDVTHLQALQE 477

Query: 456 LYLGLNIFTSVLSSTIWNLKDILFIDVSSN 485
           L +  N   SV       L  + +I +  N
Sbjct: 478 LNVASNQLKSVPDGVFDRLTSLQYIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 87.6 bits (217), Expect = 4e-18
 Identities = 79/471 (16%), Positives = 148/471 (31%), Gaps = 78/471 (16%)

Query: 58  NISSFNLQGTITPQLGNLS-----SLQTLDLSHNKLS---GNIPSSIFNMHTLKLLDFSD 109
            + SF+    +   +G+++         +D S+  L+    ++P         K L  S 
Sbjct: 8   IVGSFHFVCALALIVGSMTPFSNELESMVDYSNRNLTHVPKDLPP------RTKALSLSQ 61

Query: 110 NQLFGSLSSFIF-NMSSMTTIDLSINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLS 168
           N +   L       +S +  + LS NR+   L  ++          + LE L++  N L 
Sbjct: 62  NSIS-ELRMPDISFLSELRVLRLSHNRIR-SLDFHVFL------FNQDLEYLDVSHNRLQ 113

Query: 169 GAIPKEIGNLTKLKEIISTITNSTVCEIPREIGNLPYLARLALATNNLVGVVPVTIF-NM 227
             I      +  L+                          L L+ N+   +     F N+
Sbjct: 114 -NIS--CCPMASLRH-------------------------LDLSFNDFDVLPVCKEFGNL 145

Query: 228 SALKEISLLNNSL-SGSLPSRIDLSLPNVETLNLGINSFSGTIPSSIT--NSSKLSDLEL 284
           + L  + L         L     L L  +  L+L      G    S+   N++ L  +  
Sbjct: 146 TKLTFLGLSAAKFRQLDLLPVAHLHLSCI-LLDLVSYHIKGGETESLQIPNTTVLHLVFH 204

Query: 285 GENLFSGFIPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDG 344
             +LFS  +  ++  L +L+  NI  N                    L V +        
Sbjct: 205 PNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWK 264

Query: 345 ILPKSIGNFSLS-LETILMANCSISGNIPQVVGNLSNLLVLELGGNNLTGPIPVTFSQLQ 403
              K    F    +E + + N +I+  I +     S                      L+
Sbjct: 265 CSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSET-------------------ALK 305

Query: 404 TLQAFDLTRNKLAGPITDELCHLARLHSLVLQGNKFSGSIPSCLGNLTSVRVLYLGLNIF 463
           +L    +                A ++  +L  +        C  + +S   L    N+F
Sbjct: 306 SLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVF 365

Query: 464 TSVLSSTIWNLKDILFIDVSSNFLD--GPLSLDIGNLKVVIGLDFSRNNLS 512
           T  +      LK +  + +  N L     ++L   N+  +  LD S N+L+
Sbjct: 366 TDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLN 416

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 85.7 bits (212), Expect = 2e-17
 Identities = 72/404 (17%), Positives = 137/404 (33%), Gaps = 25/404 (6%)

Query: 73  GNLSSLQTLDLSHNKLSGNIPSSIF-NMHTLKLLDFSDNQL-FGSLSSFIFNMSSMTTID 130
             ++SL+ LDLS N          F N+  L  L  S  +     L        S   +D
Sbjct: 118 CPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLD 177

Query: 131 LSINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEIGNLTKLK-EIISTIT 189
           L    + G    ++    +T+                          L+ +K    +   
Sbjct: 178 LVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQR 237

Query: 190 NSTVCEIPREIGNLPYLARLALATNNLVGVVPVTIFNMSALKEISLLNNSLSGSLPSRI- 248
             T          L  +    + T     V     F    ++ +++ N +++  +     
Sbjct: 238 LMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEF 297

Query: 249 ---DLSLPNVETLNLGINSFSGTIPSSITNSSKLSDLELGENLFSGFIPNTIGNLRNLEF 305
              + +L ++   ++    F  +  +  +  ++++   L  +           +  +  F
Sbjct: 298 TYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTF 357

Query: 306 GNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGILPKSIGNF----SLSLETIL 361
            N   N  T S  +    S+L     L+ LI+  N L     K         SL    + 
Sbjct: 358 LNFTQNVFTDSVFQGC--STLKR---LQTLILQRNGLK-NFFKVALMTKNMSSLETLDVS 411

Query: 362 MANCSISGNIPQVVGNLSNLLVLELGGNNLTGPIPVTFSQL-QTLQAFDLTRNKLAGPIT 420
           + N   S    +      ++LVL L  N LTG +   F  L   ++  DL  N++   I 
Sbjct: 412 L-NSLNSHAYDRTCAWAESILVLNLSSNMLTGSV---FRCLPPKVKVLDLHNNRIMS-IP 466

Query: 421 DELCHLARLHSLVLQGNKFSGSIP-SCLGNLTSVRVLYLGLNIF 463
            ++ HL  L  L +  N+   S+P      LTS++ ++L  N +
Sbjct: 467 KDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPW 509

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 67.6 bits (165), Expect = 8e-12
 Identities = 43/186 (23%), Positives = 83/186 (44%), Gaps = 16/186 (8%)

Query: 57  LNISSFNLQGTITPQLGNLSSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQL--FG 114
             +S  +          + SS   L+ + N  + ++      +  L+ L    N L  F 
Sbjct: 334 KMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFF 393

Query: 115 SLSSFIFNMSSMTTIDLSINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKE 174
            ++    NMSS+ T+D+S+N L+       C    +      +  LNL  N L+G++ + 
Sbjct: 394 KVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES------ILVLNLSSNMLTGSVFRC 447

Query: 175 I-GNLTKLKEIISTITNSTVCEIPREIGNLPYLARLALATNNLVGVVPVTIF-NMSALKE 232
           +   +  L      + N+ +  IP+++ +L  L  L +A+N L   VP  +F  +++L+ 
Sbjct: 448 LPPKVKVL-----DLHNNRIMSIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQY 501

Query: 233 ISLLNN 238
           I L +N
Sbjct: 502 IWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 67.2 bits (164), Expect = 1e-11
 Identities = 59/348 (16%), Positives = 117/348 (33%), Gaps = 27/348 (7%)

Query: 3   LKSIISQHQQALLALKAHISYDHTNLFARNWTSSTSVCIWIGITCDVNSHRVIGLNISSF 62
           +K   ++  Q       H+ +   +LF+     S +    + +         I LN  + 
Sbjct: 183 IKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQL-------SNIKLNDENC 235

Query: 63  NLQGTITPQLGNLSSLQTLDLSHNKLSGNIPSSIFN---MHTLKLLDFSDNQLFGSLSSF 119
               T   +L    +L  + L H + +      +F       ++ L+  +  +   +   
Sbjct: 236 QRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDRE 295

Query: 120 IFNMSSMTTIDLSINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEIGNLT 179
            F  S      L I  +  ++        +  S   ++    L  ++          + +
Sbjct: 296 EFTYSETALKSLMIEHVKNQVFLFS--KEALYSVFAEMNIKMLSISDTPFIHMVCPPSPS 353

Query: 180 KLKEIISTITNSTVCEIPREIGNLPYLARLALATNNLVGVVPVTIFNMSALKEISLLNNS 239
                ++   N     + +    L  L  L L  N L             +  +  L+ S
Sbjct: 354 SF-TFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK-NFFKVALMTKNMSSLETLDVS 411

Query: 240 LSGSLPSRIDLSL----PNVETLNLGINSFSGTIPSSITNSSKLSDLELGENLFSGFIPN 295
           L+ SL S           ++  LNL  N  +G++   +    K+  L+L  N     IP 
Sbjct: 412 LN-SLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMS-IPK 467

Query: 296 TIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLD 343
            + +L+ L+  N+A N L S  P+  F         L+ + +  NP D
Sbjct: 468 DVTHLQALQELNVASNQLKS-VPDGVF----DRLTSLQYIWLHDNPWD 510

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 64.1 bits (156), Expect = 1e-10
 Identities = 56/315 (17%), Positives = 106/315 (33%), Gaps = 37/315 (11%)

Query: 26  TNLFARNWTSSTSVCIWIGITCD---VNSHRVIGLNISSFNLQGTI-----TPQLGNLSS 77
                 N T       W              V  LNI +  +   I     T     L S
Sbjct: 247 RGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKS 306

Query: 78  LQTLDLSHNKLSGNIPSSIFNMHT-LKLLDFSDNQLFGSLSSFIFNMSSMTTIDLSINRL 136
           L    + +         +++++   + +   S +           + SS T ++ + N  
Sbjct: 307 LMIEHVKNQVFL-FSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVF 365

Query: 137 SGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEIG---NLTKLKEIISTITNSTV 193
           + +     C      S  K+L+ L L  N L     K      N++ L+ +  ++ +   
Sbjct: 366 T-DSVFQGC------STLKRLQTLILQRNGLK-NFFKVALMTKNMSSLETLDVSLNSLNS 417

Query: 194 CEIPREIGNLPYLARLALATNNLVGVVPVTIFNMSALKEISLLNNSLSGSLPSRIDLSLP 253
               R       +  L L++N L G V   +     +K + L NN +  S+P  +   L 
Sbjct: 418 HAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVT-HLQ 473

Query: 254 NVETLNLGINSFSGTIPSSI-TNSSKLSDLELGENLF----------SGFIPNTIGNLRN 302
            ++ LN+  N    ++P  +    + L  + L +N +          S +I    G +RN
Sbjct: 474 ALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWINKHSGVVRN 532

Query: 303 LEFGNIADNYLTSST 317
                  D+   S +
Sbjct: 533 SAGSVAPDSAKCSGS 547

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 56.0 bits (135), Expect = 3e-08
 Identities = 56/347 (16%), Positives = 128/347 (36%), Gaps = 27/347 (7%)

Query: 57  LNISSFNLQGTITPQL--GNLSSLQTLDLSHNKLSGNIPSSIFNMHTLKL--LDFSDNQL 112
           L++ S++++G  T  L   N + L  +   ++  S  +  S+  +  L+L  +  +D   
Sbjct: 176 LDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENC 235

Query: 113 FGSLSSFIFNMSSMTTIDLSINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIP 172
              ++         T +++++  +         K+       + +E LN+    ++  I 
Sbjct: 236 QRLMTFLSELTRGPTLLNVTLQHIETTWKC-SVKLFQFF-WPRPVEYLNIYNLTITERID 293

Query: 173 KEIGNLTKLKEIISTITNSTVCEIPREIGN----LPYLARLALATNNLVGVVPVTIFNMS 228
           +E    ++       I +                   +    L+ ++   +  V   + S
Sbjct: 294 REEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPS 353

Query: 229 ALKEISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSITNSSKLSDLELGEN- 287
           +   ++   N  +     +   +L  ++TL L  N            +  +S LE  +  
Sbjct: 354 SFTFLNFTQNVFT-DSVFQGCSTLKRLQTLILQRNGLK-NFFKVALMTKNMSSLETLDVS 411

Query: 288 ---LFSGFIPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDG 344
              L S     T     ++   N++ N LT S         L    K+KVL +  N +  
Sbjct: 412 LNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFR-----CLP--PKVKVLDLHNNRIM- 463

Query: 345 ILPKSIGNFSLSLETILMANCSISGNIPQ-VVGNLSNLLVLELGGNN 390
            +PK + +   +L+ + +A+  +  ++P  V   L++L  + L  N 
Sbjct: 464 SIPKDVTHLQ-ALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNP 508

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 99.1 bits (247), Expect = 5e-22
 Identities = 51/232 (21%), Positives = 94/232 (40%), Gaps = 19/232 (8%)

Query: 61  SFNLQGTITP-QLGNLSSLQTLDLSHNKLSGNIPSSIF-NMHTLKLLDFSDNQLFGSLSS 118
             N    I      +L  L+ L L  N +   I    F  + +L  L+  DN L   + S
Sbjct: 83  MENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFDNWL-TVIPS 140

Query: 119 FIF-NMSSMTTIDLSINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEI-G 176
             F  +S +  + L  N +   +P          ++   L  L+LG       I +    
Sbjct: 141 GAFEYLSKLRELWLRNNPIE-SIP------SYAFNRVPSLMRLDLGELKKLEYISEGAFE 193

Query: 177 NLTKLKEIISTITNSTVCEIPREIGNLPYLARLALATNNLVGVVPVTIFNMSALKEISLL 236
            L  LK +   +    + ++P  +  L  L  L ++ N+   + P +   +S+LK++ ++
Sbjct: 194 GLFNLKYL--NLGMCNIKDMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVM 250

Query: 237 NNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSI-TNSSKLSDLELGEN 287
           N+ +S  +       L ++  LNL  N+ S ++P  + T    L +L L  N
Sbjct: 251 NSQVS-LIERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 98.7 bits (246), Expect = 6e-22
 Identities = 58/272 (21%), Positives = 104/272 (38%), Gaps = 26/272 (9%)

Query: 76  SSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQLFGSLSSFIF-NMSSMTTIDLSIN 134
           +    +  +   LS  +P  I      + L+  +N +   + +  F ++  +  + L  N
Sbjct: 54  NQFSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNI-QMIQADTFRHLHHLEVLQLGRN 109

Query: 135 RLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEI-GNLTKLKEIISTITNSTV 193
            +  ++           +    L  L L  N L+  IP      L+KL+E+   + N+ +
Sbjct: 110 SIR-QIE------VGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSKLREL--WLRNNPI 159

Query: 194 CEIPREI-GNLPYLARLALATNNLVGVVPVTIF-NMSALKEISLLNNSLSGSLPSRIDLS 251
             IP      +P L RL L     +  +    F  +  LK ++L   ++   +P+     
Sbjct: 160 ESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMPN--LTP 216

Query: 252 LPNVETLNLGINSFSGTIPSSITNSSKLSDLELGENLFSGFIPNTIGNLRNLEFGNIADN 311
           L  +E L +  N F    P S    S L  L +  +  S    N    L +L   N+A N
Sbjct: 217 LVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHN 276

Query: 312 YLTSSTPELSFLSSLTNCKKLKVLIVTGNPLD 343
            L+S   +L   + L     L  L +  NP +
Sbjct: 277 NLSSLPHDL--FTPLRY---LVELHLHHNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 82.9 bits (205), Expect = 9e-17
 Identities = 52/259 (20%), Positives = 91/259 (35%), Gaps = 13/259 (5%)

Query: 228 SALKEISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSITNSSKLSDLELGEN 287
           +   ++      LS  +P  I     N   LNL  N+       +  +   L  L+LG N
Sbjct: 54  NQFSKVVCTRRGLS-EVPQGIP---SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRN 109

Query: 288 LFSGFIPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGILP 347
                       L +L    + DN+LT           L+    L+ L +  NP++ I  
Sbjct: 110 SIRQIEVGAFNGLASLNTLELFDNWLTVIPSGA--FEYLSK---LRELWLRNNPIESIPS 164

Query: 348 KSIGNFSLSLETILMANCSISGNIP-QVVGNLSNLLVLELGGNNLTGPIPVTFSQLQTLQ 406
            +      SL  + +        I       L NL  L LG  N+   +P   + L  L+
Sbjct: 165 YAFNRVP-SLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MP-NLTPLVGLE 221

Query: 407 AFDLTRNKLAGPITDELCHLARLHSLVLQGNKFSGSIPSCLGNLTSVRVLYLGLNIFTSV 466
             +++ N            L+ L  L +  ++ S    +    L S+  L L  N  +S+
Sbjct: 222 ELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSL 281

Query: 467 LSSTIWNLKDILFIDVSSN 485
                  L+ ++ + +  N
Sbjct: 282 PHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 81.7 bits (202), Expect = 2e-16
 Identities = 47/237 (19%), Positives = 83/237 (35%), Gaps = 14/237 (5%)

Query: 253 PNVETLNLGINSFSGTIPSSITNSSKLSDLELGENLFSGFIPNTIGNLRNLEFGNIADNY 312
                +       S  +P  I   S    L L EN       +T  +L +LE   +  N 
Sbjct: 54  NQFSKVVCTRRGLS-EVPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS 110

Query: 313 LTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGILPKSIGNFSLSLETILMANCSISGNIP 372
           +           +      L  L +  N L  I   +    S  L  + + N  I  +IP
Sbjct: 111 IRQIEVG-----AFNGLASLNTLELFDNWLTVIPSGAFEYLS-KLRELWLRNNPIE-SIP 163

Query: 373 QVV-GNLSNLLVLELGGNNLTGPIPV-TFSQLQTLQAFDLTRNKLAGPITDELCHLARLH 430
                 + +L+ L+LG       I    F  L  L+  +L    +       L  L  L 
Sbjct: 164 SYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM--PNLTPLVGLE 221

Query: 431 SLVLQGNKFSGSIPSCLGNLTSVRVLYLGLNIFTSVLSSTIWNLKDILFIDVSSNFL 487
            L + GN F    P     L+S++ L++  +  + +  +    L  ++ ++++ N L
Sbjct: 222 ELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNL 278

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 57.4 bits (139), Expect = 1e-08
 Identities = 26/100 (26%), Positives = 44/100 (44%), Gaps = 11/100 (11%)

Query: 70  PQLGNLSSLQTLDLSHNKLSGNIPSSIF-NMHTLKLLDFSDNQLFGSLSSFIF-NMSSMT 127
           P L  L  L+ L++S N     I    F  + +LK L   ++Q+   +    F  ++S+ 
Sbjct: 212 PNLTPLVGLEELEMSGNHFP-EIRPGSFHGLSSLKKLWVMNSQV-SLIERNAFDGLASLV 269

Query: 128 TIDLSINRLSGELPANICKIPSTLSKCKQLEELNLGFNNL 167
            ++L+ N LS  LP          +  + L EL+L  N  
Sbjct: 270 ELNLAHNNLS-SLP------HDLFTPLRYLVELHLHHNPW 302

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A* Length = 301

 Score = 96.3 bits (240), Expect = 6e-22
 Identities = 40/186 (21%), Positives = 61/186 (32%), Gaps = 64/186 (34%)

Query: 640 NGMEVAVKVFHQQYERALKSFEDECEVRK--RIRHRNLVKIISSS--------------- 682
            G  VAVK+F  + E+   S+  E E+     +RH N++  I+S                
Sbjct: 30  QGENVAVKIFSSRDEK---SWFRETELYNTVMLRHENILGFIASDMTSRHSSTQLWLITH 86

Query: 683 -------------------------------LEYLH-----FGHSIPIIHCDLKPSNVLL 706
                                          L +LH           I H DLK  N+L+
Sbjct: 87  YHEMGSLYDYLQLTTLDTVSCLRIVLSIASGLAHLHIEIFGTQGKPAIAHRDLKSKNILV 146

Query: 707 DEDMVAHISDFGIAKLLSGEDQLSKQTQTLA--TIGYMAPE------YGTKGRVSTRGDV 758
            ++    I+D G+A + S               T  YMAPE               R D+
Sbjct: 147 KKNGQCCIADLGLAVMHSQSTNQLDVGNNPRVGTKRYMAPEVLDETIQVDCFDSYKRVDI 206

Query: 759 CSFGII 764
            +FG++
Sbjct: 207 WAFGLV 212

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 97.1 bits (242), Expect = 2e-21
 Identities = 57/272 (20%), Positives = 108/272 (39%), Gaps = 47/272 (17%)

Query: 76  SSLQTLDLSHNKLSGNIPSSIF-NMHTLKLLDFSDNQLFGSLSSFIF-NMSSMTTIDLSI 133
           ++ + L+L  N++   I  + F ++  L++L  S N +  ++    F  ++++ T++L  
Sbjct: 64  TNTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNHI-RTIEIGAFNGLANLNTLELFD 121

Query: 134 NRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEIGNLTKLKEIISTITNSTV 193
           NRL+  +P              +L+EL L  N +                          
Sbjct: 122 NRLT-TIP------NGAFVYLSKLKELWLRNNPIE------------------------- 149

Query: 194 CEIPREI-GNLPYLARLALATNNLVGVVPVTIF-NMSALKEISLLNNSLSGSLPSRIDLS 251
             IP      +P L RL L     +  +    F  +S L+ ++L   +L   +P+     
Sbjct: 150 -SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPN--LTP 205

Query: 252 LPNVETLNLGINSFSGTIPSSITNSSKLSDLELGENLFSGFIPNTIGNLRNLEFGNIADN 311
           L  ++ L+L  N  S   P S      L  L + ++       N   NL++L   N+A N
Sbjct: 206 LIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHN 265

Query: 312 YLTSSTPELSFLSSLTNCKKLKVLIVTGNPLD 343
            LT    +L   + L +   L+ + +  NP +
Sbjct: 266 NLTLLPHDL--FTPLHH---LERIHLHHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 96.7 bits (241), Expect = 3e-21
 Identities = 45/221 (20%), Positives = 91/221 (41%), Gaps = 18/221 (8%)

Query: 71  QLGNLSSLQTLDLSHNKLSGNIPSSIF-NMHTLKLLDFSDNQLFGSLSSFIF-NMSSMTT 128
              +L  L+ L LS N +   I    F  +  L  L+  DN+L  ++ +  F  +S +  
Sbjct: 83  SFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFDNRL-TTIPNGAFVYLSKLKE 140

Query: 129 IDLSINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEI-GNLTKLKEIIST 187
           + L  N +   +P          ++   L  L+LG       I +     L+ L+ +   
Sbjct: 141 LWLRNNPIE-SIP------SYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLN-- 191

Query: 188 ITNSTVCEIPREIGNLPYLARLALATNNLVGVVPVTIFNMSALKEISLLNNSLSGSLPSR 247
           +    + EIP  +  L  L  L L+ N+L  + P +   +  L+++ ++ + +   +   
Sbjct: 192 LAMCNLREIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ-VIERN 249

Query: 248 IDLSLPNVETLNLGINSFSGTIPSSI-TNSSKLSDLELGEN 287
              +L ++  +NL  N+ +  +P  + T    L  + L  N
Sbjct: 250 AFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 78.6 bits (194), Expect = 2e-15
 Identities = 50/222 (22%), Positives = 86/222 (38%), Gaps = 13/222 (5%)

Query: 268 TIPSSITNSSKLSDLELGENLFSGFIPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLT 327
            +P  I  S+    L L EN       N+  +LR+LE   ++ N++ +         +  
Sbjct: 57  EVPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIG-----AFN 109

Query: 328 NCKKLKVLIVTGNPLDGILPKSIGNFSLSLETILMANCSISGNIPQVV-GNLSNLLVLEL 386
               L  L +  N L  I   +    S  L+ + + N  I  +IP      + +L  L+L
Sbjct: 110 GLANLNTLELFDNRLTTIPNGAFVYLS-KLKELWLRNNPIE-SIPSYAFNRIPSLRRLDL 167

Query: 387 GGNNLTGPIPV-TFSQLQTLQAFDLTRNKLAGPITDELCHLARLHSLVLQGNKFSGSIPS 445
           G       I    F  L  L+  +L    L       L  L +L  L L GN  S   P 
Sbjct: 168 GELKRLSYISEGAFEGLSNLRYLNLAMCNLREI--PNLTPLIKLDELDLSGNHLSAIRPG 225

Query: 446 CLGNLTSVRVLYLGLNIFTSVLSSTIWNLKDILFIDVSSNFL 487
               L  ++ L++  +    +  +   NL+ ++ I+++ N L
Sbjct: 226 SFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNL 267

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 56.7 bits (137), Expect = 1e-08
 Identities = 29/100 (29%), Positives = 42/100 (42%), Gaps = 11/100 (11%)

Query: 70  PQLGNLSSLQTLDLSHNKLSGNIPSSIF-NMHTLKLLDFSDNQLFGSLSSFIF-NMSSMT 127
           P L  L  L  LDLS N LS  I    F  +  L+ L    +Q+   +    F N+ S+ 
Sbjct: 201 PNLTPLIKLDELDLSGNHLS-AIRPGSFQGLMHLQKLWMIQSQI-QVIERNAFDNLQSLV 258

Query: 128 TIDLSINRLSGELPANICKIPSTLSKCKQLEELNLGFNNL 167
            I+L+ N L+  LP          +    LE ++L  N  
Sbjct: 259 EINLAHNNLT-LLP------HDLFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 42.0 bits (99), Expect = 6e-04
 Identities = 23/142 (16%), Positives = 46/142 (32%), Gaps = 11/142 (7%)

Query: 379 SNLLVLELGGNNLTGPIPVT-FSQLQTLQAFDLTRNKLAGPITDELCHLARLHSLVLQGN 437
           +    +     NL   +P    +  + L   +L  N++     +   HL  L  L L  N
Sbjct: 43  NQFSKVICVRKNLRE-VPDGISTNTRLL---NLHENQIQIIKVNSFKHLRHLEILQLSRN 98

Query: 438 KFSGSIPSCLGNLTSVRVLYLGLNIFTSVLSSTIWNLKDILFIDVSSNFLDGPLSLDIG- 496
                       L ++  L L  N  T++ +     L  +  + + +N ++   S+    
Sbjct: 99  HIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE---SIPSYA 155

Query: 497 --NLKVVIGLDFSRNNLSGDIP 516
              +  +  LD         I 
Sbjct: 156 FNRIPSLRRLDLGELKRLSYIS 177

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 93.9 bits (234), Expect = 6e-21
 Identities = 62/345 (17%), Positives = 129/345 (37%), Gaps = 53/345 (15%)

Query: 77  SLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQLFGSLSSFIF-NMSSMTTIDLSINR 135
            L+ +  S   L   +P  +       LLD  +N++   +    F N+ ++ T+ L  N+
Sbjct: 32  HLRVVQCSDLGLE-KVPKDLPP--DTALLDLQNNKI-TEIKDGDFKNLKNLHTLILINNK 87

Query: 136 LSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEI-GNLTKLKEIISTITNSTVC 194
           +S ++       P   +   +LE L L  N L   +P+++   L +L+     +  + + 
Sbjct: 88  IS-KIS------PGAFAPLVKLERLYLSKNQLK-ELPEKMPKTLQELR-----VHENEIT 134

Query: 195 EIPREI-GNLPYLARLALATNNL-VGVVPVTIF-NMSALKEISLLNNSLSGSLPSRIDLS 251
           ++ + +   L  +  + L TN L    +    F  M  L  I + + +++ ++P  +   
Sbjct: 135 KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL--- 190

Query: 252 LPNVETLNLGINSFSGTIPSSITNSSKLSDLELGENLFSGFIPNTIGNLRNLEFGNIADN 311
            P++  L+L  N  +    +S+   + L+ L L  N  S     ++ N  +L   ++ +N
Sbjct: 191 PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN 250

Query: 312 YLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGILPKSIGNFSLSLETILMANCSISGNI 371
            L            L + K ++V+ +  N +  I                          
Sbjct: 251 KLVKVPG------GLADHKYIQVVYLHNNNISAIGSNDFCP------------------- 285

Query: 372 PQVVGNLSNLLVLELGGNNLTGPI--PVTFSQLQTLQAFDLTRNK 414
           P      ++   + L  N +      P TF  +    A  L   K
Sbjct: 286 PGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 91.6 bits (228), Expect = 4e-20
 Identities = 57/301 (18%), Positives = 103/301 (34%), Gaps = 26/301 (8%)

Query: 195 EIPREIGNLPYLARLALATNNLVGVVPVTIFNMSALKEISLLNNSLSGSLPSRIDLSLPN 254
           ++P+++   P  A L L  N +  +      N+  L  + L+NN +S  +       L  
Sbjct: 45  KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS-KISPGAFAPLVK 101

Query: 255 VETLNLGINSFSGTIPSSITNSSKLSDLELGENLFSGFIPNTIGNLRNLEFGNIADNYLT 314
           +E L L  N     +P  +     L +L + EN  +    +    L  +    +  N L 
Sbjct: 102 LERLYLSKNQLK-ELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLK 158

Query: 315 SST-PELSFLSSLTNCKKLKVLIVTGNPLDGILPKSIGNFSLSLETILMANCSISGNIPQ 373
           SS     +F       KKL  + +    +  I     G    SL  + +    I+  +  
Sbjct: 159 SSGIENGAF----QGMKKLSYIRIADTNITTIPQ---GLPP-SLTELHLDGNKIT-KVDA 209

Query: 374 VV-GNLSNLLVLELGGNNLTGPIPVTFSQLQTLQAFDLTRNKLAGPITDELCHLARLHSL 432
                L+NL  L L  N+++     + +    L+   L  NKL   +   L     +  +
Sbjct: 210 ASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK-VPGGLADHKYIQVV 268

Query: 433 VLQGNKFSG------SIPSCLGNLTSVRVLYLGLN--IFTSVLSSTIWNLKDILFIDVSS 484
            L  N  S         P       S   + L  N   +  +  ST   +     + + +
Sbjct: 269 YLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGN 328

Query: 485 N 485
            
Sbjct: 329 Y 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 91.2 bits (227), Expect = 5e-20
 Identities = 55/256 (21%), Positives = 101/256 (39%), Gaps = 26/256 (10%)

Query: 71  QLGNLSSLQTLDLSHNKLSGNIPSSIF-NMHTLKLLDFSDNQLFGSLSSFIFNMSSMTTI 129
              NL +L TL L +NK+S  I    F  +  L+ L  S NQL   L   +    ++  +
Sbjct: 71  DFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLYLSKNQL-KELPEKMP--KTLQEL 126

Query: 130 DLSINRLSGELPANICKIPSTLSKCKQLEELNLGFNNL-SGAIPKEI-GNLTKLKEIIST 187
            +  N ++ ++        S  +   Q+  + LG N L S  I       + KL  I   
Sbjct: 127 RVHENEIT-KVR------KSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYI--R 177

Query: 188 ITNSTVCEIPREIGNLPYLARLALATNNLVGVVPVTIFNMSALKEISLLNNSLSGSLPSR 247
           I ++ +  IP+  G  P L  L L  N +  V   ++  ++ L ++ L  NS+S ++ + 
Sbjct: 178 IADTNITTIPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS-AVDNG 234

Query: 248 IDLSLPNVETLNLGINSFSGTIPSSITNSSKLSDLELGENLFSGFIPNTIG------NLR 301
              + P++  L+L  N     +P  + +   +  + L  N  S    N            
Sbjct: 235 SLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKA 293

Query: 302 NLEFGNIADNYLTSST 317
           +    ++  N +    
Sbjct: 294 SYSGVSLFSNPVQYWE 309

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 83.5 bits (207), Expect = 2e-17
 Identities = 54/279 (19%), Positives = 105/279 (37%), Gaps = 28/279 (10%)

Query: 259 NLGINSFSGTIPSSITNSSKLSDLELGENLFSGFIPNTIGNLRNLEFGNIADNYLTSSTP 318
           +LG+      +P           L+L  N  +        NL+NL    + +N ++  +P
Sbjct: 40  DLGLEKVPKDLPPDTAL------LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISP 93

Query: 319 ELSFLSSLTNCKKLKVLIVTGNPLDGILPKSIGNFSLSLETILMANCSISGNIPQVVGNL 378
                 +     KL+ L ++ N L  +          +L+ + +    I+     V   L
Sbjct: 94  G-----AFAPLVKLERLYLSKNQLKEL---PEKMPK-TLQELRVHENEITKVRKSVFNGL 144

Query: 379 SNLLVLELGGNNLT-GPIPV-TFSQLQTLQAFDLTRNKLAGPITDELCHLARLHSLVLQG 436
           + ++V+ELG N L    I    F  ++ L    +    +   I   L     L  L L G
Sbjct: 145 NQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGL--PPSLTELHLDG 201

Query: 437 NKFSGSIPS-CLGNLTSVRVLYLGLNIFTSVLSSTIWNLKDILFIDVSSNFLDGPLSLDI 495
           NK +  + +  L  L ++  L L  N  ++V + ++ N   +  + +++N L   +   +
Sbjct: 202 NKIT-KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK-VPGGL 259

Query: 496 GNLKVVIGLDFSRNNLSGDIPITIGEGEIPRGGPFANLT 534
            + K +  +    NN+S      IG  +    G      
Sbjct: 260 ADHKYIQVVYLHNNNIS-----AIGSNDFCPPGYNTKKA 293

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 65.8 bits (161), Expect = 1e-11
 Identities = 22/116 (18%), Positives = 45/116 (38%), Gaps = 6/116 (5%)

Query: 72  LGNLSSLQTLDLSHNKLSGNIPSSIF-NMHTLKLLDFSDNQLFGSLSSFIFNMSSMTTID 130
           L  L++L  L LS N +S  + +    N   L+ L  ++N+L   +   + +   +  + 
Sbjct: 212 LKGLNNLAKLGLSFNSIS-AVDNGSLANTPHLRELHLNNNKL-VKVPGGLADHKYIQVVY 269

Query: 131 LSINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLS-GAIPKEI-GNLTKLKEI 184
           L  N +S  + +N    P   +K      ++L  N +    I       +     +
Sbjct: 270 LHNNNIS-AIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAV 324

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 93.6 bits (233), Expect = 1e-20
 Identities = 53/342 (15%), Positives = 115/342 (33%), Gaps = 49/342 (14%)

Query: 59  ISSFNLQGTITPQLGNLSSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQLFGSLSS 118
           I S + + +      +         S   L+ +IPS +     +K LD S+N++   +S+
Sbjct: 14  IISLSKEESSNQASLSCDRNGICKGSSGSLN-SIPSGLTE--AVKSLDLSNNRI-TYISN 69

Query: 119 FIF-NMSSMTTIDLSINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEIGN 177
                  ++  + L+ N ++  +  +      + S    LE L+L +N LS         
Sbjct: 70  SDLQRCVNLQALVLTSNGIN-TIEED------SFSSLGSLEHLDLSYNYLS--------- 113

Query: 178 LTKLKEIISTITNSTVCEIPREI-GNLPYLARLALATNNLVGVVPVTIF-NMSALKEISL 235
                             +       L  L  L L  N    +   ++F +++ L+ + +
Sbjct: 114 -----------------NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRV 156

Query: 236 LNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSITNSSKLSDLELGENLFSGFIPN 295
            N      +  +    L  +E L +  +      P S+ +   +S L L        +  
Sbjct: 157 GNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEI 216

Query: 296 TIGNLRNLEFGNIADNYLT----SSTPELSFLSSLTNCKKLKVLIVTGNPLDGILPKSIG 351
            +    ++E   + D  L     S        +SL      + + +T   L  ++     
Sbjct: 217 FVDVTSSVECLELRDTDLDTFHFSELSTGET-NSLIKKFTFRNVKITDESLFQVMKLLNQ 275

Query: 352 NFSLSLETILMANCSISGNIPQ-VVGNLSNLLVLELGGNNLT 392
                L  +  +   +  ++P  +   L++L  + L  N   
Sbjct: 276 I--SGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 85.6 bits (212), Expect = 5e-18
 Identities = 58/273 (21%), Positives = 105/273 (38%), Gaps = 20/273 (7%)

Query: 72  LGNLSSLQTLDLSHNKLSGNIPSSIF-NMHTLKLLDFSDNQLFGSLSSFIF-NMSSMTTI 129
           L    +LQ L L+ N ++  I    F ++ +L+ LD S N L  +LSS  F  +SS+T +
Sbjct: 72  LQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNYL-SNLSSSWFKPLSSLTFL 129

Query: 130 DLSINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEI-GNLTKLKEIISTI 188
           +L  N              S  S   +L+ L +G  +    I ++    LT L+E+   I
Sbjct: 130 NLLGNPYKTLGET------SLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEEL--EI 181

Query: 189 TNSTVCEIPREI-GNLPYLARLALATNNLVGVVPVTIFNMSALKEISLLNNSLSG----S 243
             S +     +   ++  ++ L L     + ++ + +   S+++ + L +  L       
Sbjct: 182 DASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSE 241

Query: 244 LPSRIDLSLPNVETLNLGINSFSG--TIPSSITNSSKLSDLELGENLFSGFIPNTIGNLR 301
           L +    SL    T      +      +   +   S L +LE   N            L 
Sbjct: 242 LSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLT 301

Query: 302 NLEFGNIADNYLTSSTPELSFLSSLTNCKKLKV 334
           +L+   +  N    S P + +LS   N    K 
Sbjct: 302 SLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKE 334

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 80.9 bits (200), Expect = 2e-16
 Identities = 49/277 (17%), Positives = 98/277 (35%), Gaps = 22/277 (7%)

Query: 220 VPVTIFNMSALKEISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSI-TNSSK 278
           +P  +    A+K + L NN ++  + +       N++ L L  N  + TI     ++   
Sbjct: 46  IPSGLT--EAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGS 101

Query: 279 LSDLELGENLFSGFIPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVT 338
           L  L+L  N  S    +    L +L F N+  N   +   E S  S LT    L++L V 
Sbjct: 102 LEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTL-GETSLFSHLTK---LQILRVG 157

Query: 339 GNPLDGILPKSIGNFS--LSLETILMANCSISGNIPQVVGNLSNLLVLELGGNNLTGPIP 396
                  + +   +F+    LE + +    +    P+ + ++ N+  L L        + 
Sbjct: 158 NMDTFTKIQR--KDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLE 215

Query: 397 VTFSQLQTLQAFDLTRNKLAGP--------ITDELCHLARLHSLVLQGNKFSGSIPSCLG 448
           +      +++  +L    L            T+ L       ++ +        +   L 
Sbjct: 216 IFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLN 274

Query: 449 NLTSVRVLYLGLNIFTSVLSSTIWNLKDILFIDVSSN 485
            ++ +  L    N   SV       L  +  I + +N
Sbjct: 275 QISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 56.7 bits (137), Expect = 1e-08
 Identities = 45/225 (20%), Positives = 77/225 (34%), Gaps = 34/225 (15%)

Query: 268 TIPSSITNSSKLSDLELGENLFSGFIPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLT 327
           +IPS +T +  +  L+L  N  +    + +    NL+   +  N + +   E SF SSL 
Sbjct: 45  SIPSGLTEA--VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINT-IEEDSF-SSLG 100

Query: 328 NCKKLKVLIVTGNPLDGILPKSIGNFSLSLETILMANCSISGNIPQVVGNLSNLLVLELG 387
           +   L+ L ++ N L  +       F                        LS+L  L L 
Sbjct: 101 S---LEHLDLSYNYLSNLSS---SWFK----------------------PLSSLTFLNLL 132

Query: 388 GNNLTG-PIPVTFSQLQTLQAFDLTRNKLAGPITDE-LCHLARLHSLVLQGNKFSGSIPS 445
           GN          FS L  LQ   +        I  +    L  L  L +  +      P 
Sbjct: 133 GNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPK 192

Query: 446 CLGNLTSVRVLYLGLNIFTSVLSSTIWNLKDILFIDVSSNFLDGP 490
            L ++ +V  L L +     +L   +     +  +++    LD  
Sbjct: 193 SLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTF 237

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 56.3 bits (136), Expect = 2e-08
 Identities = 35/222 (15%), Positives = 73/222 (32%), Gaps = 3/222 (1%)

Query: 332 LKVLIVTGNPLDGILPKSIGNFSLSLETILMANCSISGNIPQVVGNLSNLLVLELGGNNL 391
           +K L ++ N +  I    +     +L+ +++ +  I+        +L +L  L+L  N L
Sbjct: 54  VKSLDLSNNRITYISNSDLQRCV-NLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL 112

Query: 392 TGPIPVTFSQLQTLQAFDLTRNKLAG-PITDELCHLARLHSLVLQGNKFSGSIPS-CLGN 449
           +      F  L +L   +L  N       T    HL +L  L +        I       
Sbjct: 113 SNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAG 172

Query: 450 LTSVRVLYLGLNIFTSVLSSTIWNLKDILFIDVSSNFLDGPLSLDIGNLKVVIGLDFSRN 509
           LT +  L +  +   S    ++ +++++  + +        L + +     V  L+    
Sbjct: 173 LTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDT 232

Query: 510 NLSGDIPITIGEGEIPRGGPFANLTAKSFMGNELLCGLPDLQ 551
           +L       +  GE                   L   +  L 
Sbjct: 233 DLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLN 274

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A* Length = 342

 Score = 92.5 bits (230), Expect = 2e-20
 Identities = 39/186 (20%), Positives = 60/186 (32%), Gaps = 64/186 (34%)

Query: 640 NGMEVAVKVFHQQYERALKSFEDECEVRK--RIRHRNLVKIISSS--------------- 682
            G EVAVK+F  + ER   S+  E E+ +   +RH N++  I++                
Sbjct: 64  RGEEVAVKIFSSREER---SWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVSD 120

Query: 683 -------------------------------LEYLH-----FGHSIPIIHCDLKPSNVLL 706
                                          L +LH           I H DLK  N+L+
Sbjct: 121 YHEHGSLFDYLNRYTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILV 180

Query: 707 DEDMVAHISDFGIAKLLSGEDQLSKQTQTLA--TIGYMAPE------YGTKGRVSTRGDV 758
            ++    I+D G+A                   T  YMAPE               R D+
Sbjct: 181 KKNGTCCIADLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADI 240

Query: 759 CSFGII 764
            + G++
Sbjct: 241 YAMGLV 246

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} Length = 337

 Score = 92.5 bits (230), Expect = 2e-20
 Identities = 39/186 (20%), Positives = 59/186 (31%), Gaps = 64/186 (34%)

Query: 640 NGMEVAVKVFHQQYERALKSFEDECEVRK--RIRHRNLVKIISSS--------------- 682
            G +VAVKVF    E    S+  E E+ +   +RH N++  I++                
Sbjct: 59  RGEKVAVKVFFTTEEA---SWFRETEIYQTVLMRHENILGFIAADIKGTGSWTQLYLITD 115

Query: 683 -------------------------------LEYLH-----FGHSIPIIHCDLKPSNVLL 706
                                          L +LH           I H DLK  N+L+
Sbjct: 116 YHENGSLYDYLKSTTLDAKSMLKLAYSSVSGLCHLHTEIFSTQGKPAIAHRDLKSKNILV 175

Query: 707 DEDMVAHISDFGIAKLLSGEDQLSKQTQTLA--TIGYMAPE------YGTKGRVSTRGDV 758
            ++    I+D G+A     +             T  YM PE           +     D+
Sbjct: 176 KKNGTCCIADLGLAVKFISDTNEVDIPPNTRVGTKRYMPPEVLDESLNRNHFQSYIMADM 235

Query: 759 CSFGII 764
            SFG+I
Sbjct: 236 YSFGLI 241

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens} Length = 310

 Score = 91.2 bits (227), Expect = 4e-20
 Identities = 40/182 (21%), Positives = 66/182 (36%), Gaps = 59/182 (32%)

Query: 639 GNGMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVK------------IISSSLEYL 686
             G  + +K   +  E   ++F  E +V + + H N++K             I+   EY+
Sbjct: 33  ETGEVMVMKELIRFDEETQRTFLKEVKVMRCLEHPNVLKFIGVLYKDKRLNFIT---EYI 89

Query: 687 HFG--------------------------------HSIPIIHCDLKPSNVLLDEDMVAHI 714
             G                                HS+ IIH DL   N L+ E+    +
Sbjct: 90  KGGTLRGIIKSMDSQYPWSQRVSFAKDIASGMAYLHSMNIIHRDLNSHNCLVRENKNVVV 149

Query: 715 SDFGIAKLLSGEDQLSKQTQTLA------------TIGYMAPEYGTKGRVSTRGDVCSFG 762
           +DFG+A+L+  E    +  ++L                +MAPE         + DV SFG
Sbjct: 150 ADFGLARLMVDEKTQPEGLRSLKKPDRKKRYTVVGNPYWMAPEMINGRSYDEKVDVFSFG 209

Query: 763 II 764
           I+
Sbjct: 210 IV 211

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 90.1 bits (224), Expect = 5e-20
 Identities = 51/218 (23%), Positives = 81/218 (37%), Gaps = 26/218 (11%)

Query: 57  LNISSFNLQGTITPQLGNLSSLQTLDLSHNKLSGNIPSSIF-NMHTLKLLDFSDNQLFGS 115
           + +    +            +L  L L  N L+  I ++ F  +  L+ LD SDN    S
Sbjct: 37  IFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSDNAQLRS 95

Query: 116 LSSFIF-NMSSMTTIDLSINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKE 174
           +    F  +  + T+ L    L  EL       P        L+ L L  N L  A+P +
Sbjct: 96  VDPATFHGLGRLHTLHLDRCGLQ-ELG------PGLFRGLAALQYLYLQDNALQ-ALPDD 147

Query: 175 I-GNLTKLKEI------ISTITNSTVCEIPREIGNLPYLARLALATNNLVGVVPVTIFNM 227
              +L  L  +      IS++              L  L RL L  N +  V P    ++
Sbjct: 148 TFRDLGNLTHLFLHGNRISSVPERA-------FRGLHSLDRLLLHQNRVAHVHPHAFRDL 200

Query: 228 SALKEISLLNNSLSGSLPSRIDLSLPNVETLNLGINSF 265
             L  + L  N+LS +LP+     L  ++ L L  N +
Sbjct: 201 GRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 87.4 bits (217), Expect = 5e-19
 Identities = 44/222 (19%), Positives = 84/222 (37%), Gaps = 28/222 (12%)

Query: 76  SSLQTLDLSHNKLSGNIPSSIF-NMHTLKLLDFSDNQLFGSLSSFIF-NMSSMTTIDLSI 133
           ++ Q + L  N++S ++P++ F     L +L    N L   + +  F  ++ +  +DLS 
Sbjct: 32  AASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVL-ARIDAAAFTGLALLEQLDLSD 89

Query: 134 NRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEI-GNLTKLKEI------IS 186
           N     +       P+T     +L  L+L    L   +   +   L  L+ +      + 
Sbjct: 90  NAQLRSVD------PATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQ 142

Query: 187 TITNSTVCEIPREIGNLPYLARLALATNNLVGVVPVTIFNMSALKEISLLNNSLSGSLPS 246
            + + T         +L  L  L L  N +  V       + +L  + L  N ++  +  
Sbjct: 143 ALPDDT-------FRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA-HVHP 194

Query: 247 RIDLSLPNVETLNLGINSFSGTIPSSI-TNSSKLSDLELGEN 287
                L  + TL L  N+ S  +P+        L  L L +N
Sbjct: 195 HAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 77.3 bits (191), Expect = 1e-15
 Identities = 47/250 (18%), Positives = 85/250 (34%), Gaps = 35/250 (14%)

Query: 237 NNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSITNSSKLSDLELGENLFSGFIPNT 296
              L  ++P  I       + + L  N  S    +S      L+ L L  N+ +      
Sbjct: 20  QQGLQ-AVPVGIP---AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAA 75

Query: 297 IGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGILPKSIGNFSLS 356
              L  LE  +++DN    S    +F        +L  L +    L              
Sbjct: 76  FTGLALLEQLDLSDNAQLRSVDPATF----HGLGRLHTLHLDRCGLQ------------- 118

Query: 357 LETILMANCSISGNIPQVVGNLSNLLVLELGGNNLTGPIPV-TFSQLQTLQAFDLTRNKL 415
                     +   + +    L+ L  L L  N L   +P  TF  L  L    L  N++
Sbjct: 119 ---------ELGPGLFR---GLAALQYLYLQDNALQA-LPDDTFRDLGNLTHLFLHGNRI 165

Query: 416 AGPITDELCHLARLHSLVLQGNKFSGSIPSCLGNLTSVRVLYLGLNIFTSVLSSTIWNLK 475
           +         L  L  L+L  N+ +   P    +L  +  LYL  N  +++ +  +  L+
Sbjct: 166 SSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLR 225

Query: 476 DILFIDVSSN 485
            + ++ ++ N
Sbjct: 226 ALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 69.3 bits (170), Expect = 6e-13
 Identities = 51/291 (17%), Positives = 88/291 (30%), Gaps = 67/291 (23%)

Query: 124 SSMTTIDLSINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEIGNLTKLKE 183
               T       L   +P  I   P+        + + L  N +S            L  
Sbjct: 11  EPKVTTSCPQQGLQ-AVPVGI---PAAS------QRIFLHGNRISHVPAASFRACRNLTI 60

Query: 184 IISTITNSTVCEIPREIGNLPYLARLALATNNLVGVVPVTIFNMSALKEISLLNNSLSGS 243
                                    L L +N L  +       ++ L+++ L +N+   S
Sbjct: 61  -------------------------LWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRS 95

Query: 244 LPSRIDLSLPNVETLNLGINSFSGTIPSSI-TNSSKLSDLELGENLFSGFIPNTIGNLRN 302
           +       L  + TL+L        +   +    + L  L L +N       +T  +L N
Sbjct: 96  VDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGN 154

Query: 303 LEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGILPKSIGNFSLSLETILM 362
           L    +  N ++ S PE +F         L  L++  N +  + P +   F         
Sbjct: 155 LTHLFLHGNRIS-SVPERAF----RGLHSLDRLLLHQNRVAHVHPHA---FR-------- 198

Query: 363 ANCSISGNIPQVVGNLSNLLVLELGGNNLTGPIPVTFSQLQTLQAFDLTRN 413
                         +L  L+ L L  NNL+       + L+ LQ   L  N
Sbjct: 199 --------------DLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 63.9 bits (156), Expect = 3e-11
 Identities = 45/220 (20%), Positives = 64/220 (29%), Gaps = 31/220 (14%)

Query: 268 TIPSSITNSSKLSDLELGENLFSGFIPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLT 327
            +P  I   +    + L  N  S     +    RNL    +  N L          ++ T
Sbjct: 25  AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDA-----AAFT 77

Query: 328 NCKKLKVLIVTGNPLDGILPKSIGNFSLSLETILMANCSISGNIPQVVGNLSNLLVLELG 387
               L+ L ++ N     +                         P     L  L  L L 
Sbjct: 78  GLALLEQLDLSDNAQLRSVD------------------------PATFHGLGRLHTLHLD 113

Query: 388 GNNLTGPIPVTFSQLQTLQAFDLTRNKLAGPITDELCHLARLHSLVLQGNKFSGSIPSCL 447
              L    P  F  L  LQ   L  N L     D    L  L  L L GN+ S       
Sbjct: 114 RCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAF 173

Query: 448 GNLTSVRVLYLGLNIFTSVLSSTIWNLKDILFIDVSSNFL 487
             L S+  L L  N    V      +L  ++ + + +N L
Sbjct: 174 RGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNL 213

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 90.1 bits (224), Expect = 1e-19
 Identities = 51/269 (18%), Positives = 97/269 (36%), Gaps = 23/269 (8%)

Query: 71  QLGNLSSLQTLDLSHNKLSGNIPSSIF-NMHTLKLLDFSDNQLFGSLSSFIFNMSSMTTI 129
               L  L  L L +NK+S  I    F  +  L+ L  S N L   +   +   SS+  +
Sbjct: 73  DFKGLQHLYALVLVNNKIS-KIHEKAFSPLRKLQKLYISKNHL-VEIPPNLP--SSLVEL 128

Query: 130 DLSINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEIGNLTKLKEIISTIT 189
            +  NR+  ++P          S  + +  + +G N L      E G    LK     I+
Sbjct: 129 RIHDNRIR-KVP------KGVFSGLRNMNCIEMGGNPLE-NSGFEPGAFDGLKLNYLRIS 180

Query: 190 NSTVCEIPREIGNLPYLARLALATNNLVGVVPVTIFNMSALKEISLLNNSLSGSLPSRID 249
            + +  IP+       L  L L  N +  +    +   S L  + L +N +   + +   
Sbjct: 181 EAKLTGIPK--DLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIR-MIENGSL 237

Query: 250 LSLPNVETLNLGINSFSGTIPSSITNSSKLSDLELGENLFSGFIPNTIGNLR------NL 303
             LP +  L+L  N  S  +P+ + +   L  + L  N  +    N    +         
Sbjct: 238 SFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYY 296

Query: 304 EFGNIADNYLTSSTPELSFLSSLTNCKKL 332
              ++ +N +     + +    +T+   +
Sbjct: 297 NGISLFNNPVPYWEVQPATFRCVTDRLAI 325

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 83.9 bits (208), Expect = 1e-17
 Identities = 57/348 (16%), Positives = 109/348 (31%), Gaps = 60/348 (17%)

Query: 77  SLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQLFGSLSSFIF-NMSSMTTIDLSINR 135
            L+ +  S   L   +P  I       LLD  +N +   L    F  +  +  + L  N+
Sbjct: 34  HLRVVQCSDLGLK-AVPKEISP--DTTLLDLQNNDI-SELRKDDFKGLQHLYALVLVNNK 89

Query: 136 LSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEIGNLTKLKEI------ISTIT 189
           +S ++           S  ++L++L +  N+L   IP  +   + L E+      I  + 
Sbjct: 90  IS-KIH------EKAFSPLRKLQKLYISKNHLV-EIPPNL--PSSLVELRIHDNRIRKVP 139

Query: 190 NSTVCEIPREIGNLPYLARLALATNNLVGV-VPVTIFNMSALKEISLLNNSLSGSLPSRI 248
                        L  +  + +  N L         F+   L  + +    L+  +P  +
Sbjct: 140 KGV-------FSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT-GIPKDL 191

Query: 249 DLSLPNVETLNLGINSFSGTIPSSITNSSKLSDLELGENLFSGFIPNTIGNLRNLEFGNI 308
                 +  L+L  N         +   SKL  L LG N        ++  L  L   ++
Sbjct: 192 ---PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHL 248

Query: 309 ADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGILPKSIGNFSLSLETILMANCSIS 368
            +N L+         + L + K L+V+ +  N +  +           +           
Sbjct: 249 DNNKLSR------VPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGV----------- 291

Query: 369 GNIPQVVGNLSNLLVLELGGNNLTGPI--PVTFSQLQTLQAFDLTRNK 414
                     +    + L  N +      P TF  +    A      K
Sbjct: 292 --------KRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 74.7 bits (184), Expect = 1e-14
 Identities = 62/288 (21%), Positives = 114/288 (39%), Gaps = 24/288 (8%)

Query: 228 SALKEISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSITNSSKLSDLELGEN 287
           S + ++  L  + S   P      L  V+  +LG+ +    I    T       L+L  N
Sbjct: 11  SGIPDLDSLPPTYSAMCPFGCHCHLRVVQCSDLGLKAVPKEISPDTTL------LDLQNN 64

Query: 288 LFSGFIPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGILP 347
             S    +    L++L    + +N ++    +     + +  +KL+ L ++ N L  I P
Sbjct: 65  DISELRKDDFKGLQHLYALVLVNNKISKIHEK-----AFSPLRKLQKLYISKNHLVEIPP 119

Query: 348 KSIGNFSLSLETILMANCSISGNIPQVVGNLSNLLVLELGGNNLT-GPIPV-TFSQLQTL 405
                 S SL  + + +  I      V   L N+  +E+GGN L         F  L  L
Sbjct: 120 ---NLPS-SLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KL 174

Query: 406 QAFDLTRNKLAGPITDELCHLARLHSLVLQGNKFSGSIPS-CLGNLTSVRVLYLGLNIFT 464
               ++  KL G I  +L     L+ L L  NK   +I    L   + +  L LG N   
Sbjct: 175 NYLRISEAKLTG-IPKDL--PETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIR 230

Query: 465 SVLSSTIWNLKDILFIDVSSNFLDGPLSLDIGNLKVVIGLDFSRNNLS 512
            + + ++  L  +  + + +N L   +   + +LK++  +    NN++
Sbjct: 231 MIENGSLSFLPTLRELHLDNNKLSR-VPAGLPDLKLLQVVYLHTNNIT 277

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 48.9 bits (117), Expect = 4e-06
 Identities = 36/183 (19%), Positives = 60/183 (32%), Gaps = 24/183 (13%)

Query: 379 SNLLVLELGGNNLTGPIPVTFSQLQTLQAFDLTRNKLAGPITDELCHLARLHSLVLQGNK 438
            +  +L+L  N+++      F  LQ L A  L  NK++         L +L  L +  N 
Sbjct: 54  PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH 113

Query: 439 FSGSIPSCLGNLTSVRVLYLGLNIFTSVLSSTIWNLKDILFIDVSSNFL-DGPLSLDI-G 496
               IP      +S+  L +  N    V       L+++  I++  N L +         
Sbjct: 114 LV-EIPP--NLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFD 170

Query: 497 NLKVVIGLDFSRNNLSGDIPITIGEGEIPRGGPFANLTAKSFMGNEL-------LCGLPD 549
            LK+   L  S   L+           IP+      L       N++       L     
Sbjct: 171 GLKLNY-LRISEAKLT----------GIPKDL-PETLNELHLDHNKIQAIELEDLLRYSK 218

Query: 550 LQV 552
           L  
Sbjct: 219 LYR 221

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis} Length = 309

 Score = 86.9 bits (216), Expect = 9e-19
 Identities = 39/189 (20%), Positives = 63/189 (33%), Gaps = 64/189 (33%)

Query: 635 LIGIGNGM-------------EVAVKVFHQQY---ERALKSFEDECEVRKRIRHRNLV-- 676
           L+G G GM              VA+K+  +            + E     R++  ++V  
Sbjct: 41  LVGRG-GMGDVYEAEDTVRERIVALKLMSETLSSDPVFRTRMQREARTAGRLQEPHVVPI 99

Query: 677 --------------------------------------KIISSSLEYLHFGHSIPIIHCD 698
                                                  I+      L   H+    H D
Sbjct: 100 HDFGEIDGQLYVDMRLINGVDLAAMLRRQGPLAPPRAVAIVRQIGSALDAAHAAGATHRD 159

Query: 699 LKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIG---YMAPEYGTKGRVSTR 755
           +KP N+L+  D  A++ DFGIA   +      K TQ   T+G   YMAPE  ++   + R
Sbjct: 160 VKPENILVSADDFAYLVDFGIASATTD----EKLTQLGNTVGTLYYMAPERFSESHATYR 215

Query: 756 GDVCSFGII 764
            D+ +   +
Sbjct: 216 ADIYALTCV 224

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp} Length = 294

 Score = 86.1 bits (214), Expect = 1e-18
 Identities = 47/196 (23%), Positives = 71/196 (36%), Gaps = 64/196 (32%)

Query: 628 DRFSENNLIGIGNGM-------------EVAVKVFHQQY---ERALKSFEDECEVRKRIR 671
           +R+   + +G G GM             +VA+K         E  LK FE E     ++ 
Sbjct: 11  ERYKIVDKLGGG-GMSTVYLAEDTILNIKVAIKAIFIPPREKEETLKRFEREVHNSSQLS 69

Query: 672 HRNLV----------------------------------------KIISSSLEYLHFGHS 691
           H+N+V                                           +  L+ +   H 
Sbjct: 70  HQNIVSMIDVDEEDDCYYLVMEYIEGPTLSEYIESHGPLSVDTAINFTNQILDGIKHAHD 129

Query: 692 IPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIG---YMAPEYGT 748
           + I+H D+KP N+L+D +    I DFGIAK LS     +  TQT   +G   Y +PE   
Sbjct: 130 MRIVHRDIKPQNILIDSNKTLKIFDFGIAKALSE----TSLTQTNHVLGTVQYFSPEQAK 185

Query: 749 KGRVSTRGDVCSFGII 764
                   D+ S GI+
Sbjct: 186 GEATDECTDIYSIGIV 201

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} Length = 681

 Score = 85.3 bits (211), Expect = 3e-17
 Identities = 34/187 (18%), Positives = 59/187 (31%), Gaps = 66/187 (35%)

Query: 625 RATDRFSENNLIGIGNGMEVAVKVFHQQY-ERALKSFEDECEVRKRIRHRNLVKI----- 678
            A DR    N+    NG  V +K         A      E +    + H ++V+I     
Sbjct: 98  LALDR----NV----NGRPVVLKGLVHSGDAEAQAMAMAERQFLAEVVHPSIVQIFNFVE 149

Query: 679 -------------------------------ISSSLEY-------LHFGHSIPIIHCDLK 700
                                          ++ ++ Y       L + HSI +++ DLK
Sbjct: 150 HTDRHGDPVGYIVMEYVGGQSLKRSKGQKLPVAEAIAYLLEILPALSYLHSIGLVYNDLK 209

Query: 701 PSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQT---LATIGYMAPEYGTKGRVSTRGD 757
           P N++L E+ +  + D G    +                 T G+ APE       +   D
Sbjct: 210 PENIMLTEEQLK-LIDLGAVSRI---------NSFGYLYGTPGFQAPEIVR-TGPTVATD 258

Query: 758 VCSFGII 764
           + + G  
Sbjct: 259 IYTVGRT 265

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 84.8 bits (209), Expect = 4e-17
 Identities = 49/281 (17%), Positives = 108/281 (38%), Gaps = 47/281 (16%)

Query: 45  ITCDVNSHRVIGLNISSFNLQGTITPQLGNLSSLQTLDLSHNKLSGNIPSSIFNMHTLKL 104
           I  D      I  N+   ++   +T     L+S+  +  +++ +  ++   I  +  +  
Sbjct: 14  IFPDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SV-QGIQYLPNVTK 69

Query: 105 LDFSDNQLFGSLSSFIFNMSSMTTIDLSINRLSGELPANICKIPSTLSKCKQLEELNLGF 164
           L  + N+L  +    + N+ ++  + L  N++          + S+L   K+L+ L+L  
Sbjct: 70  LFLNGNKL--TDIKPLTNLKNLGWLFLDENKIK--------DL-SSLKDLKKLKSLSLEH 118

Query: 165 NNLSGAIPKEIGNLTKLKEI------ISTITNSTVCEIPREIGNLPYLARLALATNNLVG 218
           N +S      + +L +L+ +      I+ IT          +  L  L  L+L  N +  
Sbjct: 119 NGISDING--LVHLPQLESLYLGNNKITDITV---------LSRLTKLDTLSLEDNQISD 167

Query: 219 VVPVTIFNMSALKEISLLNNSLSGSLPSRIDLS----LPNVETLNLGINSFSGTIPSSIT 274
           +VP+    ++ L+ + L  N +S       DL     L N++ L L          +  +
Sbjct: 168 IVPLA--GLTKLQNLYLSKNHIS-------DLRALAGLKNLDVLELFSQECLNKPINHQS 218

Query: 275 NSSKLSDLELGENLFSGFIPNTIGNLRNLEFGNIADNYLTS 315
           N    + ++  +       P  I +  + E  N+  +    
Sbjct: 219 NLVVPNTVKNTDGSL--VTPEIISDDGDYEKPNVKWHLPEF 257

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 76.3 bits (187), Expect = 2e-14
 Identities = 60/301 (19%), Positives = 104/301 (34%), Gaps = 33/301 (10%)

Query: 230 LKEISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSITNSSKLSDLELGENLF 289
           + E   ++  +    P   D +       NL   S +  +       + +  +    +  
Sbjct: 1   MGETITVSTPIKQIFP---DDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDI 55

Query: 290 SGFIPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGILPKS 349
                  I  L N+    +  N LT        +  LTN K L  L +  N +  +   S
Sbjct: 56  KSVQG--IQYLPNVTKLFLNGNKLTD-------IKPLTNLKNLGWLFLDENKIKDL--SS 104

Query: 350 IGNFSLSLETILMANCSISGNIPQVVGNLSNLLVLELGGNNLTGPIPVTFSQLQTLQAFD 409
           + +    L+++ + +  IS +I   + +L  L  L LG N +T       S+L  L    
Sbjct: 105 LKDLK-KLKSLSLEHNGIS-DI-NGLVHLPQLESLYLGNNKITDITV--LSRLTKLDTLS 159

Query: 410 LTRNKLAGPITD--ELCHLARLHSLVLQGNKFSGSIPSCLGNLTSVRVLYLGLNIFTSVL 467
           L  N+    I+D   L  L +L +L L  N  S  +   L  L ++ VL L      +  
Sbjct: 160 LEDNQ----ISDIVPLAGLTKLQNLYLSKNHIS-DL-RALAGLKNLDVLELFSQECLNKP 213

Query: 468 SSTIWNLKDILFIDVSSNFLDGPLSL----DIGNLKVVIGLDFSRNNLSGDIPITIGEGE 523
            +   NL     +  +   L  P  +    D     V   L    N +S      +  G+
Sbjct: 214 INHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGK 273

Query: 524 I 524
            
Sbjct: 274 A 274

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 75.5 bits (185), Expect = 3e-14
 Identities = 43/256 (16%), Positives = 100/256 (39%), Gaps = 25/256 (9%)

Query: 57  LNISSFNLQGTITPQLGNLSSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQLFGSL 116
           +  ++ +++ ++   +  L ++  L L+ NKL+ +I   + N+  L  L   +N++    
Sbjct: 48  IIANNSDIK-SVQG-IQYLPNVTKLFLNGNKLT-DI-KPLTNLKNLGWLFLDENKI--KD 101

Query: 117 SSFIFNMSSMTTIDLSINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEIG 176
            S + ++  + ++ L  N +S     +I    + L    QLE L LG N ++      + 
Sbjct: 102 LSSLKDLKKLKSLSLEHNGIS-----DI----NGLVHLPQLESLYLGNNKITDITV--LS 150

Query: 177 NLTKLKEIISTITNSTVCEIPREIGNLPYLARLALATNNLVGVVPVTIFNMSALKEISLL 236
            LTKL  +  ++ ++ + +I   +  L  L  L L+ N++  +    +  +  L  + L 
Sbjct: 151 RLTKLDTL--SLEDNQISDIV-PLAGLTKLQNLYLSKNHISDLRA--LAGLKNLDVLELF 205

Query: 237 NNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSITNSSKLSDLELGENLFSGFIPNT 296
           +        +     L    T+     S     P  I++        +  +L       +
Sbjct: 206 SQECLNKPINHQSN-LVVPNTVKNTDGSL--VTPEIISDDGDYEKPNVKWHLPEFTNEVS 262

Query: 297 IGNLRNLEFGNIADNY 312
               + +  G     +
Sbjct: 263 FIFYQPVTIGKAKARF 278

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 74.4 bits (182), Expect = 7e-14
 Identities = 53/282 (18%), Positives = 92/282 (32%), Gaps = 68/282 (24%)

Query: 149 STLSKCKQLEELNLGFNNLSGAIPKEIGNLTKLKEI------ISTITNSTVCEIPREIGN 202
                  +  + NL   +++ A+      L  + +I      I ++           I  
Sbjct: 15  FPDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQG---------IQY 63

Query: 203 LPYLARLALATNNLVGVVPVTIFNMSALKEISLLNNSLSGSLPSRIDLS----LPNVETL 258
           LP + +L L  N L  + P  + N+  L  + L  N +        DLS    L  +++L
Sbjct: 64  LPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIK-------DLSSLKDLKKLKSL 114

Query: 259 NLGINSFSGTIPSSITNSSKLSDLELGENLFSGFIPNTIGNLRNLEFGNIADNYLTSSTP 318
           +L  N  S  I + + +  +L  L LG N  +      +  L  L+  ++ DN ++    
Sbjct: 115 SLEHNGIS-DI-NGLVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISD--- 167

Query: 319 ELSFLSSLTNCKKLKVLIVTGNPLDGILPKSIGNFSLSLETILMANCSISGNIPQVVGNL 378
               +  L    KL+ L ++ N +  +                             +  L
Sbjct: 168 ----IVPLAGLTKLQNLYLSKNHISDLRA---------------------------LAGL 196

Query: 379 SNLLVLELGGNNLTGPIPVTFSQLQTLQAFDLTRNKLAGPIT 420
            NL VLEL             S L        T   L  P  
Sbjct: 197 KNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEI 238

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 46.6 bits (110), Expect = 2e-05
 Identities = 28/166 (16%), Positives = 54/166 (32%), Gaps = 15/166 (9%)

Query: 57  LNISSFNLQGTITPQLGNLSSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQLFGSL 116
           L + +  +   IT  L  L+ L TL L  N++S +I   +  +  L+ L  S N +  S 
Sbjct: 136 LYLGNNKIT-DITV-LSRLTKLDTLSLEDNQIS-DI-VPLAGLTKLQNLYLSKNHI--SD 189

Query: 117 SSFIFNMSSMTTIDLSINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEIG 176
              +  + ++  ++L              K  +  S       +     +L    P+ I 
Sbjct: 190 LRALAGLKNLDVLELFSQECLN-------KPINHQSNLVVPNTVKNTDGSLV--TPEIIS 240

Query: 177 NLTKLKEIISTITNSTVCEIPREIGNLPYLARLALATNNLVGVVPV 222
           +    ++                I   P     A A  +     P+
Sbjct: 241 DDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFHGRVTQPL 286

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A* Length = 311

 Score = 81.5 bits (202), Expect = 6e-17
 Identities = 47/200 (23%), Positives = 73/200 (36%), Gaps = 66/200 (33%)

Query: 628 DRFSENNLIGIGNGM-------------EVAVKVFHQQY---ERALKSFEDECEVRKRIR 671
           DR+    ++G G GM             +VAVKV              F  E +    + 
Sbjct: 12  DRYELGEILGFG-GMSEVHLARDLRDHRDVAVKVLRADLARDPSFYLRFRREAQNAAALN 70

Query: 672 HRNLV--------------------------------------------KIISSSLEYLH 687
           H  +V                                            ++I+ + + L+
Sbjct: 71  HPAIVAVYDTGEAETPAGPLPYIVMEYVDGVTLRDIVHTEGPMTPKRAIEVIADACQALN 130

Query: 688 FGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIG---YMAP 744
           F H   IIH D+KP+N+++       + DFGIA+ ++  D  +  TQT A IG   Y++P
Sbjct: 131 FSHQNGIIHRDVKPANIMISATNAVKVMDFGIARAIA--DSGNSVTQTAAVIGTAQYLSP 188

Query: 745 EYGTKGRVSTRGDVCSFGII 764
           E      V  R DV S G +
Sbjct: 189 EQARGDSVDARSDVYSLGCV 208

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 78.2 bits (193), Expect = 7e-16
 Identities = 64/339 (18%), Positives = 124/339 (36%), Gaps = 72/339 (21%)

Query: 45  ITCDVNSHRVIGLNISSFNLQGTITPQLGNLSSLQTLDLSHNKLSGNIPSSIFNMHTLKL 104
           I  D      I +     N+  T+T    +L  + TL      ++  I   +  ++ L  
Sbjct: 12  IFPDPALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVT-TI-EGVQYLNNLIG 67

Query: 105 LDFSDNQLFGSLSSFIFNMSSMTTIDLSINRLSGELPANICKIPSTLSKCKQLEELNLGF 164
           L+  DNQ+  +  + + N++ +T ++LS N L         K  S ++  + ++ L+L  
Sbjct: 68  LELKDNQI--TDLAPLKNLTKITELELSGNPL---------KNVSAIAGLQSIKTLDLTS 116

Query: 165 NNLSGAIPKEIGNLTKLKEIISTITNSTVCEIPREIGNLPYLARLALATNNLVGVVPVTI 224
                               I+ +T          +  L  L  L L  N +  + P+  
Sbjct: 117 TQ------------------ITDVTP---------LAGLSNLQVLYLDLNQITNISPLA- 148

Query: 225 FNMSALKEISLLNNSLSGSLPSRIDLS----LPNVETLNLGINSFSGTIPSSITNSSKLS 280
             ++ L+ +S+ N  +S       DL+    L  + TL    N  S    S + +   L 
Sbjct: 149 -GLTNLQYLSIGNAQVS-------DLTPLANLSKLTTLKADDNKISDI--SPLASLPNLI 198

Query: 281 DLELGENLFSGFIPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGN 340
           ++ L  N  S   P  + N  NL    + +  +T+            N   +   +V G 
Sbjct: 199 EVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN-------QPVFYNNNLVVPNVVKGP 249

Query: 341 PLDGILPKSIGNFSLSLETILMANCSISGNIPQVVGNLS 379
               I P +I +          A+ +++ N+   + N+S
Sbjct: 250 SGAPIAPATISD------NGTYASPNLTWNLTSFINNVS 282

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 75.9 bits (187), Expect = 4e-15
 Identities = 53/257 (20%), Positives = 105/257 (40%), Gaps = 38/257 (14%)

Query: 72  LGNLSSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQLFGSLSSFIFNMSSMTTIDL 131
           +  L++L  L+L  N+++ ++ + + N+  +  L+ S N L     S I  + S+ T+DL
Sbjct: 59  VQYLNNLIGLELKDNQIT-DL-APLKNLTKITELELSGNPL--KNVSAIAGLQSIKTLDL 114

Query: 132 SINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEIGNLTKLKEI------I 185
           +  +++           + L+    L+ L L  N ++   P  +  LT L+ +      +
Sbjct: 115 TSTQITD---------VTPLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQV 163

Query: 186 STITNSTVCEIPREIGNLPYLARLALATNNLVGVVPVTIFNMSALKEISLLNNSLSGSLP 245
           S +T          + NL  L  L    N +  + P+   ++  L E+ L NN +S   P
Sbjct: 164 SDLTP---------LANLSKLTTLKADDNKISDISPLA--SLPNLIEVHLKNNQISDVSP 212

Query: 246 SRIDLSLPNVETLNLGINSFSGTIPSSITNSSKLSDLELGENLFSGFIPNTIGNLRNLEF 305
                +  N+  + L   +   T      N++ +    +     +   P TI +      
Sbjct: 213 LA---NTSNLFIVTLTNQTI--TNQPVFYNNNLVVPNVVKGPSGAPIAPATISDNGTYAS 267

Query: 306 GNIADNYLTSSTPELSF 322
            N+  N LTS    +S+
Sbjct: 268 PNLTWN-LTSFINNVSY 283

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 74.0 bits (182), Expect = 2e-14
 Identities = 54/272 (19%), Positives = 102/272 (37%), Gaps = 26/272 (9%)

Query: 149 STLSKCKQLEELNLGFNNLSGAIPKEIGNLTKLKEIISTITNSTVCEIPREIGNLPYLAR 208
                     ++  G +N++  +     +L  +  +  +   + V  I   +  L  L  
Sbjct: 13  FPDPALANAIKIAAGKSNVTDTVT--QADLDGITTL--SAFGTGVTTIE-GVQYLNNLIG 67

Query: 209 LALATNNLVGVVPVTIFNMSALKEISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGT 268
           L L  N +  + P+   N++ + E+ L  N L  ++ +     L +++TL+L     +  
Sbjct: 68  LELKDNQITDLAPLK--NLTKITELELSGNPLK-NVSA--IAGLQSIKTLDLTSTQITDV 122

Query: 269 IPSSITNSSKLSDLELGENLFSGFIPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTN 328
            P  +   S L  L L  N  +   P  +  L NL++ +I +  ++        L+ L N
Sbjct: 123 TP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSD-------LTPLAN 171

Query: 329 CKKLKVLIVTGNPLDGILPKSIGNFSLSLETILMANCSISGNIPQVVGNLSNLLVLELGG 388
             KL  L    N +  I P  + +   +L  + + N  IS   P  + N SNL ++ L  
Sbjct: 172 LSKLTTLKADDNKISDISP--LASLP-NLIEVHLKNNQISDVSP--LANTSNLFIVTLTN 226

Query: 389 NNLTGPIPVTFSQLQTLQAFDLTRNKLAGPIT 420
             +T       + L               P T
Sbjct: 227 QTITNQPVFYNNNLVVPNVVKGPSGAPIAPAT 258

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 62.8 bits (153), Expect = 9e-11
 Identities = 44/241 (18%), Positives = 92/241 (38%), Gaps = 34/241 (14%)

Query: 272 SITNSSKLSDLELGENLFSGFIPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKK 331
           SIT  + ++ +                 L N        + +T          +  +   
Sbjct: 2   SITQPTAINVIF------------PDPALANAIKIAAGKSNVTD-------TVTQADLDG 42

Query: 332 LKVLIVTGNPLDGILPKSIGNFSLSLETILMANCSISGNIPQVVGNLSNLLVLELGGNNL 391
           +  L   G  +  I  + +   + +L  + + +  I+ ++   + NL+ +  LEL GN L
Sbjct: 43  ITTLSAFGTGVTTI--EGVQYLN-NLIGLELKDNQIT-DLA-PLKNLTKITELELSGNPL 97

Query: 392 TGPIPVTFSQLQTLQAFDLTRNKLAGPITDELCHLARLHSLVLQGNKFSGSIPSCLGNLT 451
                   + LQ+++  DLT  ++       L  L+ L  L L  N+ + +I   L  LT
Sbjct: 98  KNVSA--IAGLQSIKTLDLTSTQITD--VTPLAGLSNLQVLYLDLNQIT-NISP-LAGLT 151

Query: 452 SVRVLYLGLNIFTSVLSSTIWNLKDILFIDVSSNFLDGPLSLDIGNLKVVIGLDFSRNNL 511
           +++ L +G    + +  + + NL  +  +    N +     L   +L  +I +    N +
Sbjct: 152 NLQYLSIGNAQVSDL--TPLANLSKLTTLKADDNKISDISPLA--SLPNLIEVHLKNNQI 207

Query: 512 S 512
           S
Sbjct: 208 S 208

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 55.8 bits (135), Expect = 2e-08
 Identities = 48/200 (24%), Positives = 83/200 (41%), Gaps = 20/200 (10%)

Query: 70  PQLGNLSSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQLFGSLSSFIFNMSSMTTI 129
             L  LS+LQ L L  N+++ NI S +  +  L+ L   + Q+  S  + + N+S +TT+
Sbjct: 123 TPLAGLSNLQVLYLDLNQIT-NI-SPLAGLTNLQYLSIGNAQV--SDLTPLANLSKLTTL 178

Query: 130 DLSINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEIGNLTKLKEIISTIT 189
               N++S         I   L+    L E++L  N +S   P  + N + L  +  T+T
Sbjct: 179 KADDNKIS--------DISP-LASLPNLIEVHLKNNQISDVSP--LANTSNLFIV--TLT 225

Query: 190 NSTVCEIPREIGNLPYLARLALATNNLVGVVPVTIFNMSALKEISLLNNSLSGSLPSRID 249
           N T+   P    N   +    +   +   + P TI +       +L  N    S  + + 
Sbjct: 226 NQTITNQPVFYNNN-LVVPNVVKGPSGAPIAPATISDNGTYASPNLTWNLT--SFINNVS 282

Query: 250 LSLPNVETLNLGINSFSGTI 269
            +     T       FSGT+
Sbjct: 283 YTFNQSVTFKNTTVPFSGTV 302

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 80.6 bits (198), Expect = 8e-16
 Identities = 50/342 (14%), Positives = 107/342 (31%), Gaps = 32/342 (9%)

Query: 8   SQHQQALLALKAHISYDHTNLFARNWTSSTSVCIWIGITCDVNSHRVIGLNISSFNLQGT 67
             + + LL              +R     +                ++ ++ +  +++  
Sbjct: 229 WFYHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWR 288

Query: 68  ITPQLGNLSSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQLF----GSLSSFIFNM 123
                   S +   DL    L+  +P   F +         +  L               
Sbjct: 289 TPDGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATD 348

Query: 124 SSMTTIDLSINRLSGELPANICKIPSTLSKCKQLEELNLGFNNL---SGAIPKEIGNLTK 180
             +   +LS+ +           + S L  CK+L+EL             + + +  L  
Sbjct: 349 EQLFRCELSVEKS--------TVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLY 400

Query: 181 LKEIISTITNSTVCEIPREIGNLPYLARLALATNNLVGVVPVTIFNMSALKEISLLNNSL 240
            KE +   +     +  R        A L    +  +    V     + ++ + L +  L
Sbjct: 401 EKETLQYFSTLKAVDPMR-------AAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDL 453

Query: 241 SGSLPSRIDLSLPNVETLNLGINSFSGTIPSSITNSSKLSDLELGENLFSGFIPNTIGNL 300
           +  L   ++  L  V  L+L  N     +P ++     L  L+  +N     +   + NL
Sbjct: 454 T-VLCH-LE-QLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVDG-VANL 507

Query: 301 RNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPL 342
             L+   + +N L       + +  L +C +L +L + GN L
Sbjct: 508 PRLQELLLCNNRLQQ----SAAIQPLVSCPRLVLLNLQGNSL 545

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 68.6 bits (167), Expect = 4e-12
 Identities = 37/158 (23%), Positives = 63/158 (39%), Gaps = 14/158 (8%)

Query: 24  DHTNLFARNWTSSTSVCIWIGITCDVNSHRVIGLNISSFNLQGTITPQLGNLSSLQTLDL 83
           D       +   S  +     +  +    RV+ L     +   T+   L  L  +  LDL
Sbjct: 415 DPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLA----HKDLTVLCHLEQLLLVTHLDL 470

Query: 84  SHNKLSGNIPSSIFNMHTLKLLDFSDNQLFGSLSSFIFNMSSMTTIDLSINRLSGELPAN 143
           SHN+L   +P ++  +  L++L  SDN L  ++   + N+  +  + L  NRL  +  A 
Sbjct: 471 SHNRLR-ALPPALAALRCLEVLQASDNALE-NVDG-VANLPRLQELLLCNNRLQ-QSAA- 525

Query: 144 ICKIPSTLSKCKQLEELNLGFNNLSGAIPKEIGNLTKL 181
                  L  C +L  LNL  N+L          L ++
Sbjct: 526 ----IQPLVSCPRLVLLNLQGNSLC-QEEGIQERLAEM 558

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 58.2 bits (140), Expect = 7e-09
 Identities = 52/339 (15%), Positives = 93/339 (27%), Gaps = 45/339 (13%)

Query: 105 LDFSDNQLFGSLSSFIFNMSSMTTIDLSINRLSGELPANICKIPSTLSK--CKQLEELNL 162
           +   +  L    S  +   S M T+ L ++     +        +  S      L   +L
Sbjct: 250 VSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRPSHVWLCDLPAASL 309

Query: 163 GFNNLSGAIPKEIGNLTKLKEIISTITNSTVCEIPREIGNLPYLARLALATNNLVGVVPV 222
                              KE +            R+      L R  L+      V+  
Sbjct: 310 NDQLPQHTFRVIWTGSDSQKECVLLKDRPECW--CRDSATDEQLFRCELSVEKST-VLQS 366

Query: 223 TIFNMSALKEISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSITNSSKLSDL 282
            + +   L+E+   N     ++     L +  ++ L     +          +  + + L
Sbjct: 367 ELESCKELQELEPENKWCLLTII----LLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL 422

Query: 283 ELGENLFSGFIPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPL 342
           +   + F            ++   ++A   LT        L  L     +  L ++ N L
Sbjct: 423 DDLRSKFLLENSVLKMEYADVRVLHLAHKDLTV-------LCHLEQLLLVTHLDLSHNRL 475

Query: 343 DGILPKSIGNFSLSLETILMANCSISGNIPQVVGNLSNLLVLELGGNNLTGPIPVTFSQL 402
                                       +P  +  L  L VL+   N L   +    + L
Sbjct: 476 R--------------------------ALPPALAALRCLEVLQASDNALEN-VD-GVANL 507

Query: 403 QTLQAFDLTRNKLAG-PITDELCHLARLHSLVLQGNKFS 440
             LQ   L  N+L        L    RL  L LQGN   
Sbjct: 508 PRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 57.5 bits (138), Expect = 1e-08
 Identities = 20/99 (20%), Positives = 39/99 (39%), Gaps = 6/99 (6%)

Query: 61  SFNLQGTITPQLGNLSSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQLFGSLSSF- 119
           S N    + P L  L  L+ L  S N L  N+   + N+  L+ L   +N+L    ++  
Sbjct: 471 SHNRLRALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCNNRL-QQSAAIQ 527

Query: 120 -IFNMSSMTTIDLSINRLSGELPANICKIPSTLSKCKQL 157
            + +   +  ++L  N L  +      ++   L     +
Sbjct: 528 PLVSCPRLVLLNLQGNSLC-QEEGIQERLAEMLPSVSSI 565

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 50.9 bits (121), Expect = 1e-06
 Identities = 45/298 (15%), Positives = 94/298 (31%), Gaps = 18/298 (6%)

Query: 226 NMSALKEISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSITNSSKLSDLELG 285
            +S      L   S  G+L   +D +  +VE       +    +      ++ L+D    
Sbjct: 256 CLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRPSHVWLCDLPAASLNDQLPQ 315

Query: 286 ENLFSGFIPNTIGNLRNLEFGNIADNYLTSSTPE--LSFLSSLTNCKKLKVLIVTGNPLD 343
                 +  +       L           S+T E       S+     L+  + +   L 
Sbjct: 316 HTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEKSTVLQSELESCKELQ 375

Query: 344 GILPKSIGNFSLSLETILMANCSISGNIPQVVGNLSNLLVLE--------LGGNNLTGPI 395
            + P++   + L    +LM          + +   S L  ++           +      
Sbjct: 376 ELEPEN--KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLEN 433

Query: 396 PVTFSQLQTLQAFDLTRNKLAGPITDELCHLARLHSLVLQGNKFSGSIPSCLGNLTSVRV 455
            V   +   ++   L    L       L  L  +  L L  N+   ++P  L  L  + V
Sbjct: 434 SVLKMEYADVRVLHLAHKDLTVL--CHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEV 490

Query: 456 LYLGLNIFTSVLSSTIWNLKDILFIDVSSNFLDGPLSLD-IGNLKVVIGLDFSRNNLS 512
           L    N   +V    + NL  +  + + +N L    ++  + +   ++ L+   N+L 
Sbjct: 491 LQASDNALENV--DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 546

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens} Length = 432

 Score = 78.7 bits (194), Expect = 2e-15
 Identities = 42/197 (21%), Positives = 69/197 (35%), Gaps = 64/197 (32%)

Query: 629 RFSENNLIGIG-----------NGMEVAVKVFHQQYERALK------------------- 658
            F   +++G G           +  +VAVK    +                         
Sbjct: 25  SFCPKDVLGHGAEGTIVYRGMFDNRDVAVKRILPECFSFADREVQLLRESDEHPNVIRYF 84

Query: 659 -SFEDE---------CE-------VRKRIRH-----RNLVKIISSSLEYLHFGHSIPIIH 696
            + +D          C         +K   H       L++  +S L +LH   S+ I+H
Sbjct: 85  CTEKDRQFQYIAIELCAATLQEYVEQKDFAHLGLEPITLLQQTTSGLAHLH---SLNIVH 141

Query: 697 CDLKPSNVLLDE-----DMVAHISDFGIAKLLSGEDQLSKQTQTLA-TIGYMAPEY---G 747
            DLKP N+L+        + A ISDFG+ K L+       +   +  T G++APE     
Sbjct: 142 RDLKPHNILISMPNAHGKIKAMISDFGLCKKLAVGRHSFSRRSGVPGTEGWIAPEMLSED 201

Query: 748 TKGRVSTRGDVCSFGII 764
            K   +   D+ S G +
Sbjct: 202 CKENPTYTVDIFSAGCV 218

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 76.9 bits (189), Expect = 2e-15
 Identities = 48/302 (15%), Positives = 90/302 (29%), Gaps = 19/302 (6%)

Query: 225 FNMSALKEISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIP-SSITNSSKLSDLE 283
            N S  K       +  G+    +     ++E L   +++ +     + I  S  L  L 
Sbjct: 15  CNFSDPKPDWSSAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLT 74

Query: 284 LGENLFSGFIPNT---IGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGN 340
           +        I      +  +  L+   + +  +T + P     ++  +   L +  V+  
Sbjct: 75  VRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWA 134

Query: 341 PLDGILPKSIGNFSLSLETILMANCSISGNIPQVVGNLSNLLVLELGGNNLTGPI----- 395
             D  L +        L+ + +A         + V     L  L+L  N   G       
Sbjct: 135 TRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISA 194

Query: 396 --PVTFSQLQTLQAFDLTRNKLAGPITDELCHLARLHSLVLQGNKFSGSIP-SCLGNLTS 452
             P+ F  LQ L   +      +G  +       +L  L L  N    +         + 
Sbjct: 195 LCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQ 254

Query: 453 VRVLYLGLNIFTSVLSSTIWNLKDILFIDVSSNFLDG-PLSLDIGNLKVVIGLDFSRNNL 511
           +  L L       V       L     +D+S N LD  P   ++  +     L    N  
Sbjct: 255 LNSLNLSFTGLKQVPKGLPAKLS---VLDLSYNRLDRNPSPDELPQVGN---LSLKGNPF 308

Query: 512 SG 513
             
Sbjct: 309 LD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 75.7 bits (186), Expect = 5e-15
 Identities = 55/303 (18%), Positives = 89/303 (29%), Gaps = 21/303 (6%)

Query: 202 NLPYLARLALATNNLVGVVPVTIFNMSALKEISLLNNSLSGSLPSRID----LSLPNVET 257
           N         +  N +G   V ++      E  L        L    D    LSL  +  
Sbjct: 16  NFSDPKPDWSSAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTV 75

Query: 258 LNLGINSFSGTIPSSITNSSKLSDLELGENLFSGFIPNTIGNL--RNLEFGNIADNYLTS 315
               I S        +   S L +L L     +G  P  +      +L   N+ +    +
Sbjct: 76  RAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWAT 135

Query: 316 STPELSFLSSLTNCKKLKVLIVTGNPLDGILPKSIGNFSLSLETILMANCSISGNIP--- 372
               L+ L        LKVL +          + +  F  +L T+ +++    G      
Sbjct: 136 RDAWLAELQQWLK-PGLKVLSIAQAHSLNFSCEQVRVFP-ALSTLDLSDNPELGERGLIS 193

Query: 373 -QVVGNLSNLLVLELGGNNLT---GPIPVTFSQLQTLQAFDLTRNKLAGPITDELC-HLA 427
                    L VL L    +    G      +    LQ  DL+ N L        C   +
Sbjct: 194 ALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPS 253

Query: 428 RLHSLVLQGNKFSGSIPSCLGNLTSVRVLYLGLNIFTSVLSSTIWNLKDILFIDVSSNFL 487
           +L+SL L        +P  L     + VL L  N        +   L  +  + +  N  
Sbjct: 254 QLNSLNLSFTGLK-QVPKGL--PAKLSVLDLSYNRLDRN--PSPDELPQVGNLSLKGNPF 308

Query: 488 DGP 490
              
Sbjct: 309 LDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 74.5 bits (183), Expect = 1e-14
 Identities = 48/278 (17%), Positives = 90/278 (32%), Gaps = 41/278 (14%)

Query: 49  VNSHRVIGLNISSFNLQGTITPQ---LGNLSSLQTLDLSHNKLSGNIPSSIFNMHTLKL- 104
           + S  +  L + +  +   I      +  +S LQ L L + +++G  P  +       L 
Sbjct: 65  IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLN 124

Query: 105 -LDFSDNQLFGSLSSFIFNMSSMTTIDLSINRLSGELPANICKIP-STLSKCKQLEELNL 162
            L+  +     +  +++  +       L +  ++    A+        +     L  L+L
Sbjct: 125 ILNLRNVSW-ATRDAWLAELQQWLKPGLKVLSIAQ---AHSLNFSCEQVRVFPALSTLDL 180

Query: 163 GFNNLSGAIPKEIGNLTKLKEIISTITNSTVCEIPREIGNLPYLARLALATNN---LVGV 219
             N   G                     S +C         P L  LAL         GV
Sbjct: 181 SDNPELGERGLI----------------SALCP-----LKFPTLQVLALRNAGMETPSGV 219

Query: 220 VPVTIFNMSALKEISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSITNSSKL 279
                     L+ + L +NSL  +  +        + +LNL        +P  +   +KL
Sbjct: 220 CSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGL--PAKL 276

Query: 280 SDLELGENLFSGF-IPNTIGNLRNLEFGNIADNYLTSS 316
           S L+L  N       P+ +  + NL   ++  N    S
Sbjct: 277 SVLDLSYNRLDRNPSPDELPQVGNL---SLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 72.2 bits (177), Expect = 7e-14
 Identities = 46/296 (15%), Positives = 83/296 (28%), Gaps = 50/296 (16%)

Query: 71  QLGNLSSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQLFGSL---SSFIFNMSSMT 127
             G  S    L     +      + I    +LK L     ++   +   +  +  +S + 
Sbjct: 39  YGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQ 98

Query: 128 TIDLSINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEIGNLTKLKEIIST 187
            + L    ++G  P  + +          L  LNL  N         +  L +       
Sbjct: 99  ELTLENLEVTGTAPPPLLEATGP-----DLNILNLR-NVSWATRDAWLAELQQWL----- 147

Query: 188 ITNSTVCEIPREIGNLPYLARLALATNNLVGVVPVTIFNMSALKEISLLNNSLSGSLP-- 245
                           P L  L++A  + +      +    AL  + L +N   G     
Sbjct: 148 ---------------KPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLI 192

Query: 246 -SRIDLSLPNVETLNL---GINSFSGTIPSSITNSSKLSDLELGENLFSGFIPNTI-GNL 300
            +   L  P ++ L L   G+ + SG   +      +L  L+L  N              
Sbjct: 193 SALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWP 252

Query: 301 RNLEFGNIADNYLTSSTPE--------------LSFLSSLTNCKKLKVLIVTGNPL 342
             L   N++   L                    L    S     ++  L + GNP 
Sbjct: 253 SQLNSLNLSFTGLKQVPKGLPAKLSVLDLSYNRLDRNPSPDELPQVGNLSLKGNPF 308

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 53.0 bits (127), Expect = 2e-07
 Identities = 37/231 (16%), Positives = 70/231 (30%), Gaps = 37/231 (16%)

Query: 298 GNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPL-DGILPKSIGNFSLS 356
           G  R+LE+     +           + SL+    LK L V    +   IL  ++    +S
Sbjct: 40  GGGRSLEYLLKRVDTEADLGQFTDIIKSLS----LKRLTVRAARIPSRILFGALRVLGIS 95

Query: 357 -LETILMANCSISGNIPQVVGNLSNLLVLELGGNNLTGPIPVTFS------QLQTLQAFD 409
            L+ + + N  ++G  P  +   +   +  L   N++      +           L+   
Sbjct: 96  GLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLS 155

Query: 410 LTRNKLAGPITDELCHLARLHSLVLQGNKFSGSIP----SCLGNLTSVRVLYLGLNIFTS 465
           + +        +++     L +L L  N   G        C     +++VL L      +
Sbjct: 156 IAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMET 215

Query: 466 VLSSTIWNLKDILFIDVSSNFLDGPLSLDIGNLKVVIGLDFSRNNLSGDIP 516
                                  G  S        + GLD S N+L     
Sbjct: 216 ---------------------PSGVCSALAAARVQLQGLDLSHNSLRDAAG 245

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 46.8 bits (111), Expect = 1e-05
 Identities = 25/177 (14%), Positives = 52/177 (29%), Gaps = 10/177 (5%)

Query: 352 NFSLSLETILMANCSISGNIPQVVGNLSNLLVLELGGNNLTGPIPVT-FSQLQTLQAFDL 410
           NFS        A   +     ++ G   +L  L    +        T   +  +L+   +
Sbjct: 16  NFSDPKPDWSSAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTV 75

Query: 411 TRNKLAGPITDELCHL---ARLHSLVLQGNKFSGSIPSCLGNLTSVRVLYLGLN------ 461
              ++   I      +   + L  L L+  + +G+ P  L   T   +  L L       
Sbjct: 76  RAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWAT 135

Query: 462 IFTSVLSSTIWNLKDILFIDVSSNFLDGPLSLDIGNLKVVIGLDFSRNNLSGDIPIT 518
               +     W    +  + ++           +     +  LD S N   G+  + 
Sbjct: 136 RDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLI 192

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 75.8 bits (187), Expect = 3e-15
 Identities = 40/193 (20%), Positives = 76/193 (39%), Gaps = 35/193 (18%)

Query: 74  NLSSLQTLDLSHNKLSGNIPSSIF-NMHTLKLLDFSDNQLFGSLSSFIF-NMSSMTTIDL 131
           +LS L TL L+ N +  ++    F  + +L+ L   +  L  SL +F   ++ ++  +++
Sbjct: 74  SLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNV 131

Query: 132 SINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEI-GNLTKLKEIISTITN 190
           + N +          +P   S    LE L+L  N +  +I       L ++  +      
Sbjct: 132 AHNLIQ-SFK-----LPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLL------ 178

Query: 191 STVCEIPREIGNLPYLARLALATNNLVGVVPVTIFNMSALKEISLLNNSLSGSLPSRIDL 250
                             L L+ N +   +    F    LKE++L  N L  S+P  I  
Sbjct: 179 ---------------NLSLDLSLNPM-NFIQPGAFKEIRLKELALDTNQLK-SVPDGIFD 221

Query: 251 SLPNVETLNLGIN 263
            L +++ + L  N
Sbjct: 222 RLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 68.5 bits (168), Expect = 8e-13
 Identities = 53/256 (20%), Positives = 96/256 (37%), Gaps = 43/256 (16%)

Query: 76  SSLQTLDLSHNKLSGNIPSSIF-NMHTLKLLDFSDNQLFGSLSSFIF-NMSSMTTIDLSI 133
            S + LDLS N L  ++ S  F +   L++LD S  ++  ++    + ++S ++T+ L+ 
Sbjct: 28  FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEI-QTIEDGAYQSLSHLSTLILTG 85

Query: 134 NRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEIGNLTKLKEIISTITNSTV 193
           N +   L           S    L++L     NL+      IG+L  LK           
Sbjct: 86  NPIQ-SLALGA------FSGLSSLQKLVAVETNLASLENFPIGHLKTLK----------- 127

Query: 194 CEIPREIGNLPYLARLALATNNLVGVVPVTIF-NMSALKEISLLNNSLSGSLPSRIDLSL 252
                          L +A N +        F N++ L+ + L +N +  S+       L
Sbjct: 128 --------------ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVL 172

Query: 253 PNVE----TLNLGINSFSGTIPSSITNSSKLSDLELGENLFSGFIPNTIGNLRNLEFGNI 308
             +     +L+L +N  +  I        +L +L L  N            L +L+   +
Sbjct: 173 HQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWL 231

Query: 309 ADNYLTSSTPELSFLS 324
             N    S P + +LS
Sbjct: 232 HTNPWDCSCPRIDYLS 247

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 65.8 bits (161), Expect = 8e-12
 Identities = 49/223 (21%), Positives = 95/223 (42%), Gaps = 16/223 (7%)

Query: 269 IPSSITNSSKLSDLELGENLFSGFIPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTN 328
           IP ++  S+K  +L+L  N        +  +   L+  +++   + +   + ++  SL++
Sbjct: 22  IPDNLPFSTK--NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT-IEDGAY-QSLSH 77

Query: 329 CKKLKVLIVTGNPLDGILPKSIGNFSLSLETILMANCSISGNIPQVV-GNLSNLLVLELG 387
              L  LI+TGNP+  +   +    S SL+ ++    +++ ++     G+L  L  L + 
Sbjct: 78  ---LSTLILTGNPIQSLALGAFSGLS-SLQKLVAVETNLA-SLENFPIGHLKTLKELNVA 132

Query: 388 GNNLTG-PIPVTFSQLQTLQAFDLTRNKLAGPITDELCHLARL----HSLVLQGNKFSGS 442
            N +    +P  FS L  L+  DL+ NK+      +L  L ++     SL L  N  +  
Sbjct: 133 HNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-F 191

Query: 443 IPSCLGNLTSVRVLYLGLNIFTSVLSSTIWNLKDILFIDVSSN 485
           I         ++ L L  N   SV       L  +  I + +N
Sbjct: 192 IQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 61.1 bits (149), Expect = 3e-10
 Identities = 49/211 (23%), Positives = 81/211 (38%), Gaps = 13/211 (6%)

Query: 208 RLALATNNLVGVVPVTIFNMSALKEISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSG 267
            L L+ N L  +   + F+   L+ + L    +  ++      SL ++ TL L  N    
Sbjct: 32  NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQ- 89

Query: 268 TIPSSI-TNSSKLSDLELGENLFSGFIPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSL 326
           ++     +  S L  L   E   +      IG+L+ L+  N+A N + S      + S+L
Sbjct: 90  SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS-FKLPEYFSNL 148

Query: 327 TNCKKLKVLIVTGNPLDGILPKSIGNFSLSLETILMANCSISGN----IPQVVGNLSNLL 382
           TN   L+ L ++ N +  I    +    L    +L  +  +S N    I         L 
Sbjct: 149 TN---LEHLDLSSNKIQSIYCTDLRV--LHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLK 203

Query: 383 VLELGGNNLTGPIPVTFSQLQTLQAFDLTRN 413
            L L  N L       F +L +LQ   L  N
Sbjct: 204 ELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 57.3 bits (139), Expect = 5e-09
 Identities = 56/248 (22%), Positives = 80/248 (32%), Gaps = 41/248 (16%)

Query: 220 VPVTIFNMSALKEISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSI-TNSSK 278
           +P  +    + K + L  N L   L S    S P ++ L+L       TI      + S 
Sbjct: 22  IPDNLP--FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSH 77

Query: 279 LSDLELGENLFSGFIPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVT 338
           LS L L  N            L +L+     +  L S          L     LK L V 
Sbjct: 78  LSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLAS-LENFPI-GHLKT---LKELNVA 132

Query: 339 GNPLDGILPKSIGNFSLSLETILMANCSISGNIPQVVGNLSNLLVLELGGNNLTGPIPVT 398
            N +     K    FS                      NL+NL  L+L  N +       
Sbjct: 133 HNLIQSF--KLPEYFS----------------------NLTNLEHLDLSSNKIQSIYCTD 168

Query: 399 FSQLQTLQAF----DLTRNKLAGPITDELCHLARLHSLVLQGNKFSGSIPS-CLGNLTSV 453
              L  +       DL+ N +   I        RL  L L  N+   S+P      LTS+
Sbjct: 169 LRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEIRLKELALDTNQLK-SVPDGIFDRLTSL 226

Query: 454 RVLYLGLN 461
           + ++L  N
Sbjct: 227 QKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 52.7 bits (127), Expect = 2e-07
 Identities = 33/119 (27%), Positives = 57/119 (47%), Gaps = 17/119 (14%)

Query: 73  GNLSSLQTLDLSHNKLSGNIPSSIF-NMHTLKLLDFSDNQLFGSLSSFIF-NMSSMT--- 127
           G+L +L+ L+++HN +        F N+  L+ LD S N++  S+       +  M    
Sbjct: 121 GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI-QSIYCTDLRVLHQMPLLN 179

Query: 128 -TIDLSINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEI-GNLTKLKEI 184
            ++DLS+N ++         I     K  +L+EL L  N L  ++P  I   LT L++I
Sbjct: 180 LSLDLSLNPMN--------FIQPGAFKEIRLKELALDTNQLK-SVPDGIFDRLTSLQKI 229

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 48.8 bits (117), Expect = 3e-06
 Identities = 36/153 (23%), Positives = 62/153 (40%), Gaps = 17/153 (11%)

Query: 366 SISGNIPQVVGNLSNLLVLELGGNNLTGPIPVTFSQLQTLQAFDLTRNKLAGPITDELCH 425
            I  N+P       +   L+L  N L      +F     LQ  DL+R ++          
Sbjct: 21  KIPDNLP------FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQS 74

Query: 426 LARLHSLVLQGNKFSGSIPS-CLGNLTSVRVLYLGLNIFTSVLSSTIWNLKDILFIDVSS 484
           L+ L +L+L GN    S+       L+S++ L        S+ +  I +LK +  ++V+ 
Sbjct: 75  LSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH 133

Query: 485 NFL-----DGPLSLDIGNLKVVIGLDFSRNNLS 512
           N +         S ++ NL+    LD S N + 
Sbjct: 134 NLIQSFKLPEYFS-NLTNLEH---LDLSSNKIQ 162

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus} Length = 332

 Score = 76.5 bits (188), Expect = 4e-15
 Identities = 28/121 (23%), Positives = 47/121 (38%), Gaps = 19/121 (15%)

Query: 654 ERALKSFEDECEVRKRIRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAH 713
            R      +                I+ ++E+LH   S  ++H DLKPSN+    D V  
Sbjct: 154 RRCSLEDREHGVCLHIFIQ------IAEAVEFLH---SKGLMHRDLKPSNIFFTMDDVVK 204

Query: 714 ISDFGIAKLLSGEDQLSKQTQTLA----------TIGYMAPEYGTKGRVSTRGDVCSFGI 763
           + DFG+   +  +++       +           T  YM+PE       S + D+ S G+
Sbjct: 205 VGDFGLVTAMDQDEEEQTVLTPMPAYATHTGQVGTKLYMSPEQIHGNNYSHKVDIFSLGL 264

Query: 764 I 764
           I
Sbjct: 265 I 265

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 75.9 bits (187), Expect = 4e-15
 Identities = 50/217 (23%), Positives = 86/217 (39%), Gaps = 22/217 (10%)

Query: 74  NLSSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQLFGSLSSFIF-NMSSMTTIDLS 132
            ++S   ++     L+  +P  +       +L  S+N L  + S       + +T ++L 
Sbjct: 8   KVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLL-YTFSLATLMPYTRLTQLNLD 63

Query: 133 INRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEIGNLTKLKEIISTITNST 192
              L+ +L                L  L+L  N L  ++P     L  L  +   ++ + 
Sbjct: 64  RAELT-KLQV--------DGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVL--DVSFNR 111

Query: 193 VCEIPREI-GNLPYLARLALATNNLVGVVPVTIF-NMSALKEISLLNNSLSGSLPSRIDL 250
           +  +P      L  L  L L  N L   +P  +      L+++SL NN+L+  LP+ +  
Sbjct: 112 LTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLN 169

Query: 251 SLPNVETLNLGINSFSGTIPSSITNSSKLSDLELGEN 287
            L N++TL L  NS   TIP     S  L    L  N
Sbjct: 170 GLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 57.0 bits (138), Expect = 7e-09
 Identities = 46/235 (19%), Positives = 76/235 (32%), Gaps = 39/235 (16%)

Query: 252 LPNVETLNLGINSFSGTIPSSITNSSKLSDLELGENLFSGFIPNTIGNLRNLEFGNIADN 311
           + +   +N    + +  +P  +      + L L ENL   F   T+     L   N+   
Sbjct: 9   VASHLEVNCDKRNLT-ALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA 65

Query: 312 YLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGILPKSIGNFSLSLETILMANCSISGNI 371
            LT     L    +L     L  L ++ N L                           ++
Sbjct: 66  ELTK----LQVDGTLPV---LGTLDLSHNQLQ--------------------------SL 92

Query: 372 PQVVGNLSNLLVLELGGNNLTGPIPVTFSQLQTLQAFDLTRNKLAGPITDELCHLARLHS 431
           P +   L  L VL++  N LT         L  LQ   L  N+L       L    +L  
Sbjct: 93  PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEK 152

Query: 432 LVLQGNKFSGSIPS-CLGNLTSVRVLYLGLNIFTSVLSSTIWNLKDILFIDVSSN 485
           L L  N  +  +P+  L  L ++  L L  N   ++     +    + F  +  N
Sbjct: 153 LSLANNNLT-ELPAGLLNGLENLDTLLLQENSLYTI-PKGFFGSHLLPFAFLHGN 205

>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens} Length = 384

 Score = 77.0 bits (190), Expect = 5e-15
 Identities = 31/68 (45%), Positives = 40/68 (58%), Gaps = 8/68 (11%)

Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLA- 737
           +  +L+YL    +  IIH D+KP N+LLDE    HI+DF IA +L  E     Q  T+A 
Sbjct: 124 LVMALDYLQ---NQRIIHRDMKPDNILLDEHGHVHITDFNIAAMLPRET----QITTMAG 176

Query: 738 TIGYMAPE 745
           T  YMAPE
Sbjct: 177 TKPYMAPE 184

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} Length = 413

 Score = 76.6 bits (188), Expect = 7e-15
 Identities = 15/91 (16%), Positives = 31/91 (34%), Gaps = 9/91 (9%)

Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLAT 738
           +   L  LH      ++H  L+P +++LD+     ++ F       G   +S   +  A 
Sbjct: 220 VIRLLASLH---HYGLVHTYLRPVDIVLDQRGGVFLTGFEHLVRD-GASAVSPIGRGFAP 275

Query: 739 IGYMAPE-----YGTKGRVSTRGDVCSFGII 764
               A             ++   D  + G+ 
Sbjct: 276 PETTAERMLPFGQHHPTLMTFAFDTWTLGLA 306

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A* Length = 377

 Score = 76.1 bits (188), Expect = 9e-15
 Identities = 39/170 (22%), Positives = 58/170 (34%), Gaps = 48/170 (28%)

Query: 639 GNGMEVAVKVFHQQY-ERALKSFEDECEVRKRIRHRNLVKI------------------- 678
            +   VAVK   +         F  E  + K+  H N+V++                   
Sbjct: 137 ADNTLVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQPIYIVMELVQG 196

Query: 679 -------------------------ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAH 713
                                     ++ +EYL    S   IH DL   N L+ E  V  
Sbjct: 197 GDFLTFLRTEGARLRVKTLLQMVGDAAAGMEYLE---SKCCIHRDLAARNCLVTEKNVLK 253

Query: 714 ISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGI 763
           ISDFG+++  +     +        + + APE    GR S+  DV SFGI
Sbjct: 254 ISDFGMSREEADGVYAASGGLRQVPVKWTAPEALNYGRYSSESDVWSFGI 303

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 74.3 bits (183), Expect = 1e-14
 Identities = 54/288 (18%), Positives = 114/288 (39%), Gaps = 48/288 (16%)

Query: 45  ITCDVNSHRVIGLNISSFNLQGTITPQLGNLSSLQTLDLSHNKLSGNIPSSIFNMHTLKL 104
           I  D      I  N+   ++   +T     L+S+  +  +++ +  ++   I  +  +  
Sbjct: 17  IFSDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SV-QGIQYLPNVTK 72

Query: 105 LDFSDNQLFGSLSSFIFNMSSMTTIDLSINRLSGELPANICKIPSTLSKCKQLEELNLGF 164
           L  + N+L  +    + N+ ++  + L  N++          + S+L   K+L+ L+L  
Sbjct: 73  LFLNGNKL--TDIKPLANLKNLGWLFLDENKVK--------DL-SSLKDLKKLKSLSLEH 121

Query: 165 NNLSGAIPKEIGNLTKLKEI------ISTITNSTVCEIPREIGNLPYLARLALATNNLVG 218
           N +S      + +L +L+ +      I+ IT          +  L  L  L+L  N +  
Sbjct: 122 NGISDING--LVHLPQLESLYLGNNKITDITV---------LSRLTKLDTLSLEDNQISD 170

Query: 219 VVPVTIFNMSALKEISLLNNSLSGSLPSRIDLS----LPNVETLNLGINSFSGTIPSSIT 274
           +VP+    ++ L+ + L  N +S       DL     L N++ L L          +  +
Sbjct: 171 IVPLA--GLTKLQNLYLSKNHIS-------DLRALAGLKNLDVLELFSQECLNKPINHQS 221

Query: 275 NSSKLSDLELGENLFSGFIPNTIGNLRNLEFGNIADNYLTSSTPELSF 322
           N    + ++  +       P  I +  + E  N+  + L   T E+SF
Sbjct: 222 NLVVPNTVKNTDGSLVT--PEIISDDGDYEKPNVKWH-LPEFTNEVSF 266

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 63.5 bits (155), Expect = 5e-11
 Identities = 56/290 (19%), Positives = 97/290 (33%), Gaps = 69/290 (23%)

Query: 141 PANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEIGNLTKLKEI------ISTITNSTVC 194
           P  I +I  +     +  + NL   +++ A+      L  + +I      I ++      
Sbjct: 11  PTPIKQI-FSDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQG---- 63

Query: 195 EIPREIGNLPYLARLALATNNLVGVVPVTIFNMSALKEISLLNNSLSGSLPSRIDLS--- 251
                I  LP + +L L  N L  + P+   N+  L  + L  N +        DLS   
Sbjct: 64  -----IQYLPNVTKLFLNGNKLTDIKPLA--NLKNLGWLFLDENKVK-------DLSSLK 109

Query: 252 -LPNVETLNLGINSFSGTIPSSITNSSKLSDLELGENLFSGFIPNTIGNLRNLEFGNIAD 310
            L  +++L+L  N  S  I + + +  +L  L LG N  +      +  L  L+  ++ D
Sbjct: 110 DLKKLKSLSLEHNGIS-DI-NGLVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLED 165

Query: 311 NYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGILPKSIGNFSLSLETILMANCSISGN 370
           N ++        +  L    KL+ L ++ N +  +                         
Sbjct: 166 NQISD-------IVPLAGLTKLQNLYLSKNHISDLRA----------------------- 195

Query: 371 IPQVVGNLSNLLVLELGGNNLTGPIPVTFSQLQTLQAFDLTRNKLAGPIT 420
               +  L NL VLEL             S L        T   L  P  
Sbjct: 196 ----LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEI 241

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 62.0 bits (151), Expect = 1e-10
 Identities = 56/268 (20%), Positives = 103/268 (38%), Gaps = 35/268 (13%)

Query: 226 NMSALKEISLLNNSLSGSLPSRIDLSLPNVETLNL---GINSFSGTIPSSITNSSKLSDL 282
             +   + +L   S++ ++       L +++ +      I S  G     I     ++ L
Sbjct: 22  AFAETIKDNLKKKSVTDAVTQN---ELNSIDQIIANNSDIKSVQG-----IQYLPNVTKL 73

Query: 283 ELGENLFSGFIPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPL 342
            L  N  +   P  + NL+NL +  + +N +         LSSL + KKLK L +  N +
Sbjct: 74  FLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-------LSSLKDLKKLKSLSLEHNGI 124

Query: 343 DGILPKSIGNFSLSLETILMANCSISGNIPQVVGNLSNLLVLELGGNNLTGPIPVTFSQL 402
             I    + +    LE++ + N  I+ +I  V+  L+ L  L L  N ++  +P   + L
Sbjct: 125 SDI--NGLVHLP-QLESLYLGNNKIT-DI-TVLSRLTKLDTLSLEDNQISDIVP--LAGL 177

Query: 403 QTLQAFDLTRNKLAGPITD--ELCHLARLHSLVLQGNKFSGSIPSCLGNLTSVRVLYLGL 460
             LQ   L++N     I+D   L  L  L  L L   +      +   NL     +    
Sbjct: 178 TKLQNLYLSKNH----ISDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTD 233

Query: 461 NIFTSVLSSTIWNLKDILFIDVSSNFLD 488
               +     I +  D    +V  +  +
Sbjct: 234 GSLVTP--EIISDDGDYEKPNVKWHLPE 259

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 72.3 bits (178), Expect = 1e-14
 Identities = 24/170 (14%), Positives = 67/170 (39%), Gaps = 15/170 (8%)

Query: 73  GNLSSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQLFGSLSSFIFNMSSMTTIDLS 132
             ++SL  + L++  ++ ++ + I   H +K L  ++     +  + I  +S++  + + 
Sbjct: 41  AQMNSLTYITLANINVT-DL-TGIEYAHNIKDLTINNIHA--TNYNPISGLSNLERLRIM 96

Query: 133 INRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEIGNLTKLKEIISTITNST 192
              ++ +           LS    L  L++  +    +I  +I  L K+  I   ++ + 
Sbjct: 97  GKDVTSD-------KIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSI--DLSYNG 147

Query: 193 VCEIPREIGNLPYLARLALATNNLVGVVPVTIFNMSALKEISLLNNSLSG 242
                  +  LP L  L +  + +     +   +   L ++   + ++ G
Sbjct: 148 AITDIMPLKTLPELKSLNIQFDGVHDYRGIE--DFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 67.7 bits (166), Expect = 5e-13
 Identities = 24/113 (21%), Positives = 49/113 (43%), Gaps = 10/113 (8%)

Query: 72  LGNLSSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQLFGSLSSFIFNMSSMTTIDL 131
           +  LS+L+ L +    ++ +   ++  + +L LLD S +    S+ + I  +  + +IDL
Sbjct: 84  ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDL 143

Query: 132 SINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEIGNLTKLKEI 184
           S N                L    +L+ LN+ F+ +       I +  KL ++
Sbjct: 144 SYN--------GAITDIMPLKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQL 186

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 66.5 bits (163), Expect = 1e-12
 Identities = 30/173 (17%), Positives = 62/173 (35%), Gaps = 17/173 (9%)

Query: 296 TIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGILPKSIGNFSL 355
           T   + +L +  +A+  +T        L+ +     +K L +            I   S 
Sbjct: 39  TEAQMNSLTYITLANINVTD-------LTGIEYAHNIKDLTINNIHATNY--NPISGLS- 88

Query: 356 SLETILMANCSISGNIPQVVGNLSNLLVLELGGNNLTGPIPVTFSQLQTLQAFDLTRNKL 415
           +LE + +    ++ +    +  L++L +L++  +     I    + L  + + DL+ N  
Sbjct: 89  NLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGA 148

Query: 416 AGPITD--ELCHLARLHSLVLQGNKFSGSIPSCLGNLTSVRVLYLGLNIFTSV 466
              ITD   L  L  L SL +Q +         + +   +  LY         
Sbjct: 149 ---ITDIMPLKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 66.1 bits (162), Expect = 1e-12
 Identities = 25/160 (15%), Positives = 66/160 (41%), Gaps = 15/160 (9%)

Query: 57  LNISSFNLQGTITPQLGNLSSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQLFGSL 116
           + +++ N+   +T  +    +++ L +++   + N  + I  +  L+ L      +    
Sbjct: 49  ITLANINVT-DLTG-IEYAHNIKDLTINNIHAT-NY-NPISGLSNLERLRIMGKDVTSDK 104

Query: 117 SSFIFNMSSMTTIDLSINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEIG 176
              +  ++S+T +D+S +            I + ++   ++  ++L +N     I   + 
Sbjct: 105 IPNLSGLTSLTLLDISHSAHDDS-------ILTKINTLPKVNSIDLSYNGAITDI-MPLK 156

Query: 177 NLTKLKEIISTITNSTVCEIPREIGNLPYLARLALATNNL 216
            L +LK +   I    V +  R I + P L +L   +  +
Sbjct: 157 TLPELKSL--NIQFDGVHDY-RGIEDFPKLNQLYAFSQTI 193

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 64.2 bits (157), Expect = 7e-12
 Identities = 29/191 (15%), Positives = 68/191 (35%), Gaps = 17/191 (8%)

Query: 155 KQLEELNLGFNNLSGAIPKEIGNLTKLKEIISTITNSTVCEIPREIGNLPYLARLALATN 214
           K      LG ++ +     ++ +LT +      +T+ T       I     +  L +   
Sbjct: 23  KAYLNGLLGQSSTANITEAQMNSLTYITLANINVTDLT------GIEYAHNIKDLTINNI 76

Query: 215 NLVGVVPVTIFNMSALKEISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSIT 274
           +     P  I  +S L+ + ++   ++      +   L ++  L++  ++   +I + I 
Sbjct: 77  HATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLS-GLTSLTLLDISHSAHDDSILTKIN 133

Query: 275 NSSKLSDLELGENLFSGFIPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKV 334
              K++ ++L  N     I   +  L  L+  NI  + +            + +  KL  
Sbjct: 134 TLPKVNSIDLSYNGAITDIMP-LKTLPELKSLNIQFDGVHD-------YRGIEDFPKLNQ 185

Query: 335 LIVTGNPLDGI 345
           L      + G 
Sbjct: 186 LYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 60.4 bits (147), Expect = 2e-10
 Identities = 19/113 (16%), Positives = 44/113 (38%), Gaps = 10/113 (8%)

Query: 57  LNISSFNLQGTITPQLGNLSSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQLFGSL 116
           L I   ++     P L  L+SL  LD+SH+    +I + I  +  +  +D S N     +
Sbjct: 93  LRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI 152

Query: 117 SSFIFNMSSMTTIDLSINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSG 169
              +  +  + ++++  + +      +       +    +L +L      + G
Sbjct: 153 MP-LKTLPELKSLNIQFDGVH-----DY----RGIEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 58.0 bits (141), Expect = 1e-09
 Identities = 25/216 (11%), Positives = 65/216 (30%), Gaps = 48/216 (22%)

Query: 182 KEIISTITNSTVCEIPREIGNLPYLARLALATNNLVGVVPVTIFNMSALKEISLLNNSLS 241
             +   +  S+   I      +  L  + LA  N+  +  +       +K++++ N   +
Sbjct: 24  AYLNGLLGQSSTANI--TEAQMNSLTYITLANINVTDLTGIE--YAHNIKDLTINNIHAT 79

Query: 242 GSLPSRIDLS----LPNVETLNLGINSFSGTIPSSITNSSKLSDLELGENLFSGFIPNTI 297
                  + +    L N+E L +     +     +++  + L+ L++  +     I   I
Sbjct: 80  -------NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKI 132

Query: 298 GNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGILPKSIGNFSLSL 357
             L  +   +++ N   +       +  L    +LK L +  + +               
Sbjct: 133 NTLPKVNSIDLSYNGAITD------IMPLKTLPELKSLNIQFDGVHDYRG---------- 176

Query: 358 ETILMANCSISGNIPQVVGNLSNLLVLELGGNNLTG 393
                            + +   L  L      + G
Sbjct: 177 -----------------IEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 55.7 bits (135), Expect = 6e-09
 Identities = 27/141 (19%), Positives = 51/141 (36%), Gaps = 11/141 (7%)

Query: 377 NLSNLLVLELGGNNLTGPIPVTFSQLQTLQAFDLTRNKLAGPITD--ELCHLARLHSLVL 434
                L   LG ++      +T +Q+ +L    L        +TD   + +   +  L +
Sbjct: 21  TFKAYLNGLLGQSSTA---NITEAQMNSLTYITLANIN----VTDLTGIEYAHNIKDLTI 73

Query: 435 QGNKFSGSIPSCLGNLTSVRVLYLGLNIFTSVLSSTIWNLKDILFIDVSSNFLDGPLSLD 494
                +   P  +  L+++  L +     TS     +  L  +  +D+S +  D  +   
Sbjct: 74  NNIHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTK 131

Query: 495 IGNLKVVIGLDFSRNNLSGDI 515
           I  L  V  +D S N    DI
Sbjct: 132 INTLPKVNSIDLSYNGAITDI 152

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 3fpq_A Length = 290

 Score = 73.9 bits (182), Expect = 2e-14
 Identities = 36/174 (20%), Positives = 59/174 (33%), Gaps = 56/174 (32%)

Query: 640 NGMEVAVKVF--HQQYERALKSFEDECEVRKRIRHRNLVKIISSS--------------- 682
             +EVA       +  +   + F++E E+ K ++H N+V+   S                
Sbjct: 50  TTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVLVTE 109

Query: 683 --------------------------------LEYLHFGHSIPIIHCDLKPSNVLLD-ED 709
                                           L++LH   + PIIH DLK  N+ +    
Sbjct: 110 LMTSGTLKTYLKRFKVMKIKVLRSWCRQILKGLQFLH-TRTPPIIHRDLKCDNIFITGPT 168

Query: 710 MVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGI 763
               I D G+A L       +     + T  +MAPE   +       DV +FG+
Sbjct: 169 GSVKIGDLGLATLKRASFAKA----VIGTPEFMAPEMYEEK-YDESVDVYAFGM 217

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens} Length = 311

 Score = 73.5 bits (181), Expect = 3e-14
 Identities = 32/121 (26%), Positives = 45/121 (37%), Gaps = 26/121 (21%)

Query: 650 HQQYERALKSFEDECEVRKRIRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDED 709
            Q  E    S   E +V   +R          +L +LH   S  ++H D+KP+N+ L   
Sbjct: 144 QQHCEAWGASL-PEAQVWGYLRD------TLLALAHLH---SQGLVHLDVKPANIFLGPR 193

Query: 710 MVAHISDFGIAKLLSGEDQLSKQTQTLA-TIGYMAPE-----YGTKGRVSTRGDVCSFGI 763
               + DFG+   L          +       YMAPE     YGT        DV S G+
Sbjct: 194 GRCKLGDFGLLVELGTAG----AGEVQEGDPRYMAPELLQGSYGTA------ADVFSLGL 243

Query: 764 I 764
            
Sbjct: 244 T 244

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A* Length = 313

 Score = 73.1 bits (180), Expect = 4e-14
 Identities = 34/179 (18%), Positives = 63/179 (35%), Gaps = 55/179 (30%)

Query: 640 NGMEVAVKV--FHQQYERALKSFEDECEVRKRIRHRNL--VKIISSS---------LEY- 685
                A+K     +   + L S+ +E     +++  +   +++             +E  
Sbjct: 51  KKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMVMECG 110

Query: 686 -----------------------------LHFGHSIPIIHCDLKPSNVLLDEDMVAHISD 716
                                        +H  H   I+H DLKP+N L+ + M+  + D
Sbjct: 111 NIDLNSWLKKKKSIDPWERKSYWKNMLEAVHTIHQHGIVHSDLKPANFLIVDGML-KLID 169

Query: 717 FGIAKLLSGEDQLSKQTQTLATIGYMAPE-----------YGTKGRVSTRGDVCSFGII 764
           FGIA  +  +     +   + T+ YM PE             +K ++S + DV S G I
Sbjct: 170 FGIANQMQPDTTSVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCI 228

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 3pjc_A* 1yvj_A* Length = 327

 Score = 73.5 bits (181), Expect = 4e-14
 Identities = 40/177 (22%), Positives = 63/177 (35%), Gaps = 50/177 (28%)

Query: 634 NLIGIGNGMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVKI--------------- 678
           + +G   G  VAVK          + F+ E ++ K +    +VK                
Sbjct: 45  DPLGDNTGALVAVKQLQHSGPDQQRDFQREIQILKALHSDFIVKYRGVSYGPGRQSLRLV 104

Query: 679 -------------------------------ISSSLEYLHFGHSIPIIHCDLKPSNVLLD 707
                                          I   +EYL    S   +H DL   N+L++
Sbjct: 105 MEYLPSGCLRDFLQRHRARLDASRLLLYSSQICKGMEYL---GSRRCVHRDLAARNILVE 161

Query: 708 EDMVAHISDFGIAKLL-SGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGI 763
            +    I+DFG+AKLL   +D    +    + I + APE  +    S + DV SFG+
Sbjct: 162 SEAHVKIADFGLAKLLPLDKDYYVVREPGQSPIFWYAPESLSDNIFSRQSDVWSFGV 218

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens} Length = 326

 Score = 73.2 bits (180), Expect = 5e-14
 Identities = 43/177 (24%), Positives = 66/177 (37%), Gaps = 50/177 (28%)

Query: 634 NLIGIGNGMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVKI--------------- 678
           + +    G  VAVK      E  L+ FE E E+ K ++H N+VK                
Sbjct: 63  DPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLI 122

Query: 679 -------------------------------ISSSLEYLHFGHSIPIIHCDLKPSNVLLD 707
                                          I   +EYL    +   IH DL   N+L++
Sbjct: 123 MEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEYL---GTKRYIHRDLATRNILVE 179

Query: 708 EDMVAHISDFGIAKLL-SGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGI 763
            +    I DFG+ K+L   ++    +    + I + APE  T+ + S   DV SFG+
Sbjct: 180 NENRVKIGDFGLTKVLPQDKEYYKVKEPGESPIFWYAPESLTESKFSVASDVWSFGV 236

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ... Length = 452

 Score = 74.0 bits (182), Expect = 5e-14
 Identities = 41/163 (25%), Positives = 73/163 (44%), Gaps = 43/163 (26%)

Query: 642 MEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVK-----------IIS------SSLE 684
             VA+K        + ++F  E +V K++RH  LV+           I++      S L+
Sbjct: 209 TRVAIKTLKPGTM-SPEAFLQEAQVMKKLRHEKLVQLYAVVSEEPIYIVTEYMSKGSLLD 267

Query: 685 YL--HFGHSIPI----------------------IHCDLKPSNVLLDEDMVAHISDFGIA 720
           +L    G  + +                      +H DL+ +N+L+ E++V  ++DFG+A
Sbjct: 268 FLKGETGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLA 327

Query: 721 KLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGI 763
           +L+   +  ++Q      I + APE    GR + + DV SFGI
Sbjct: 328 RLIEDNEYTARQGAKFP-IKWTAPEAALYGRFTIKSDVWSFGI 369

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 3q32_A* 3rvg_A* 3tjc_A* 3tjd_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* 3io7_A* 3kck_A* 3jy9_A* Length = 295

 Score = 72.3 bits (178), Expect = 7e-14
 Identities = 43/177 (24%), Positives = 66/177 (37%), Gaps = 50/177 (28%)

Query: 634 NLIGIGNGMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVKI--------------- 678
           + +    G  VAVK      E  L+ FE E E+ K ++H N+VK                
Sbjct: 32  DPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLI 91

Query: 679 -------------------------------ISSSLEYLHFGHSIPIIHCDLKPSNVLLD 707
                                          I   +EYL    +   IH DL   N+L++
Sbjct: 92  MEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEYL---GTKRYIHRDLATRNILVE 148

Query: 708 EDMVAHISDFGIAKLL-SGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGI 763
            +    I DFG+ K+L   ++    +    + I + APE  T+ + S   DV SFG+
Sbjct: 149 NENRVKIGDFGLTKVLPQDKEFFKVKEPGESPIFWYAPESLTESKFSVASDVWSFGV 205

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B* Length = 284

 Score = 71.9 bits (177), Expect = 8e-14
 Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 18/92 (19%)

Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLAT 738
           I+  ++Y+H   S  +I+ DLKPSN+ L +     I DFG+   L  + + ++   TL  
Sbjct: 131 ITKGVDYIH---SKKLINRDLKPSNIFLVDTKQVKIGDFGLVTSLKNDGKRTRSKGTLR- 186

Query: 739 IGYMAPE------YGTKGRVSTRGDVCSFGII 764
             YM+PE      YG +       D+ + G+I
Sbjct: 187 --YMSPEQISSQDYGKE------VDLYALGLI 210

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 3eyg_A* 3eyh_A* Length = 302

 Score = 72.0 bits (177), Expect = 8e-14
 Identities = 35/178 (19%), Positives = 63/178 (35%), Gaps = 51/178 (28%)

Query: 634 NLIGIGNGMEVAVKVFHQQY-ERALKSFEDECEVRKRIRHRNLVKI-------------- 678
           +  G   G +VAVK    +     +   + E E+ + + H N+VK               
Sbjct: 43  DPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKYKGICTEDGGNGIKL 102

Query: 679 --------------------------------ISSSLEYLHFGHSIPIIHCDLKPSNVLL 706
                                           I   ++YL    S   +H DL   NVL+
Sbjct: 103 IMEFLPSGSLKEYLPKNKNKINLKQQLKYAVQICKGMDYL---GSRQYVHRDLAARNVLV 159

Query: 707 DEDMVAHISDFGIAKLL-SGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGI 763
           + +    I DFG+ K + + ++  + +    + + + APE   + +     DV SFG+
Sbjct: 160 ESEHQVKIGDFGLTKAIETDKEYYTVKDDRDSPVFWYAPECLMQSKFYIASDVWSFGV 217

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens} Length = 343

 Score = 72.4 bits (178), Expect = 9e-14
 Identities = 34/179 (18%), Positives = 63/179 (35%), Gaps = 55/179 (30%)

Query: 640 NGMEVAVKV--FHQQYERALKSFEDECEVRKRIRHRNL--VKIISSS---------LEY- 685
                A+K     +   + L S+ +E     +++  +   +++             +E  
Sbjct: 32  KKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMVMECG 91

Query: 686 -----------------------------LHFGHSIPIIHCDLKPSNVLLDEDMVAHISD 716
                                        +H  H   I+H DLKP+N L+ + M+  + D
Sbjct: 92  NIDLNSWLKKKKSIDPWERKSYWKNMLEAVHTIHQHGIVHSDLKPANFLIVDGML-KLID 150

Query: 717 FGIAKLLSGEDQLSKQTQTLATIGYMAPE-----------YGTKGRVSTRGDVCSFGII 764
           FGIA  +  +     +   + T+ YM PE             +K ++S + DV S G I
Sbjct: 151 FGIANQMQPDTTSVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCI 209

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 Length = 535

 Score = 73.8 bits (181), Expect = 9e-14
 Identities = 41/163 (25%), Positives = 73/163 (44%), Gaps = 43/163 (26%)

Query: 642 MEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVK-----------IIS------SSLE 684
             VA+K        + ++F  E +V K++RH  LV+           I++      S L+
Sbjct: 292 TRVAIKTLKPGTM-SPEAFLQEAQVMKKLRHEKLVQLYAVVSEEPIYIVTEYMSKGSLLD 350

Query: 685 YL--HFGHSIPI----------------------IHCDLKPSNVLLDEDMVAHISDFGIA 720
           +L    G  + +                      +H DL+ +N+L+ E++V  ++DFG+A
Sbjct: 351 FLKGETGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLA 410

Query: 721 KLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGI 763
           +L+   +  ++Q      I + APE    GR + + DV SFGI
Sbjct: 411 RLIEDNEYTARQGAKFP-IKWTAPEAALYGRFTIKSDVWSFGI 452

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* Length = 318

 Score = 72.0 bits (177), Expect = 1e-13
 Identities = 42/173 (24%), Positives = 68/173 (39%), Gaps = 43/173 (24%)

Query: 634 NLIGIGNGMEVAVKVFHQQY-ERALKSFEDECEVRKRIRHRNLVKII-------SSSL-- 683
           +    G G  VAVK        +    ++ E ++ + + H +++K         ++SL  
Sbjct: 53  DPTNDGTGEMVAVKALKADAGPQHRSGWKQEIDILRTLYHEHIIKYKGCCEDAGAASLQL 112

Query: 684 --EYLHFG--------HSIPI----------------------IHCDLKPSNVLLDEDMV 711
             EY+  G        HSI +                      IH DL   NVLLD D +
Sbjct: 113 VMEYVPLGSLRDYLPRHSIGLAQLLLFAQQICEGMAYLHAQHYIHRDLAARNVLLDNDRL 172

Query: 712 AHISDFGIAKLL-SGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGI 763
             I DFG+AK +  G +    +    + + + APE   + +     DV SFG+
Sbjct: 173 VKIGDFGLAKAVPEGHEYYRVREDGDSPVFWYAPECLKEYKFYYASDVWSFGV 225

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A* Length = 390

 Score = 72.5 bits (178), Expect = 1e-13
 Identities = 38/231 (16%), Positives = 73/231 (31%), Gaps = 66/231 (28%)

Query: 599 KSRTGPSNDGINSPQAIRRFSYHELLRATDRFSENNLIGIG-----------NGMEVAVK 647
           +      + G +        +   +      +S    IG G                A+K
Sbjct: 27  RQHMDSPDLGTDDDDKASSSANECISVKGRIYSILKQIGSGGSSKVFQVLNEKKQIYAIK 86

Query: 648 V--FHQQYERALKSFEDECEVRKRIRHRNL--VKIISSS---------LEY--------- 685
                +   + L S+ +E     +++  +   +++             +E          
Sbjct: 87  YVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMVMECGNIDLNSWL 146

Query: 686 ---------------------LHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLS 724
                                +H  H   I+H DLKP+N L+ + M+  + DFGIA  + 
Sbjct: 147 KKKKSIDPWERKSYWKNMLEAVHTIHQHGIVHSDLKPANFLIVDGML-KLIDFGIANQMQ 205

Query: 725 GEDQLSKQTQTLATIGYMAPE-----------YGTKGRVSTRGDVCSFGII 764
            +     +   +  + YM PE             +K ++S + DV S G I
Sbjct: 206 PDTTSVVKDSQVGAVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCI 256

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A* Length = 298

 Score = 71.1 bits (175), Expect = 2e-13
 Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 6/73 (8%)

Query: 673 RNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQ 732
           R +++ +   +  LH  +   I+H DLKP N+LLD+DM   ++DFG +  L   ++L   
Sbjct: 127 RKIMRALLEVICALHKLN---IVHRDLKPENILLDDDMNIKLTDFGFSCQLDPGEKL--- 180

Query: 733 TQTLATIGYMAPE 745
            +   T  Y+APE
Sbjct: 181 REVCGTPSYLAPE 193

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A Length = 304

 Score = 71.1 bits (175), Expect = 2e-13
 Identities = 42/174 (24%), Positives = 64/174 (36%), Gaps = 55/174 (31%)

Query: 638 IGNGMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVKI------------------- 678
              G   A+K   +       S E+E  V K+I+H N+V +                   
Sbjct: 31  RLTGKLFALKCIKKSPAFRDSSLENEIAVLKKIKHENIVTLEDIYESTTHYYLVMQLVSG 90

Query: 679 ------------------------ISSSLEYLHFGHSIPIIHCDLKPSNVLL---DEDMV 711
                                   + S+++YL   H   I+H DLKP N+L    +E+  
Sbjct: 91  GELFDRILERGVYTEKDASLVIQQVLSAVKYL---HENGIVHRDLKPENLLYLTPEENSK 147

Query: 712 AHISDFGIAKLLSGEDQLSKQTQTLA-TIGYMAPEYGTKGRVSTRGDVCSFGII 764
             I+DFG++K+            T   T GY+APE   +   S   D  S G+I
Sbjct: 148 IMITDFGLSKMEQNG-----IMSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVI 196

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A* Length = 279

 Score = 70.8 bits (174), Expect = 2e-13
 Identities = 27/95 (28%), Positives = 44/95 (46%), Gaps = 18/95 (18%)

Query: 679 ISSSLEYLHFGHSIP--IIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTL 736
           ++ +L+  H        ++H DLKP+NV LD      + DFG+A++L+ +       +T 
Sbjct: 120 LTLALKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLARILNHDTSF---AKTF 176

Query: 737 A-TIGYMAPE------YGTKGRVSTRGDVCSFGII 764
             T  YM+PE      Y  K       D+ S G +
Sbjct: 177 VGTPYYMSPEQMNRMSYNEK------SDIWSLGCL 205

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A Length = 495

 Score = 72.5 bits (178), Expect = 2e-13
 Identities = 39/170 (22%), Positives = 65/170 (38%), Gaps = 50/170 (29%)

Query: 639 GNGMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVKI-------------------- 678
              + VAVK   +     ++ F  E  V K I+H NLV++                    
Sbjct: 243 KYSLTVAVKTLKEDTM-EVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYG 301

Query: 679 -------------------------ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAH 713
                                    ISS++EYL        IH +L   N L+ E+ +  
Sbjct: 302 NLLDYLRECNRQEVSAVVLLYMATQISSAMEYLE---KKNFIHRNLAARNCLVGENHLVK 358

Query: 714 ISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGI 763
           ++DFG+++L++  D  +        I + APE     + S + DV +FG+
Sbjct: 359 VADFGLSRLMT-GDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGV 407

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 72.3 bits (178), Expect = 2e-13
 Identities = 80/458 (17%), Positives = 143/458 (31%), Gaps = 75/458 (16%)

Query: 57  LNISSFNLQGTITPQLG-NLSSLQTLDLSHNKLS----GNIPSSIFNMHTLKLLDFSDNQ 111
           L+I    L      +L   L   Q + L    L+     +I S++     L  L+   N+
Sbjct: 8   LDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE 67

Query: 112 LFGSLSSFIFNM-----SSMTTIDLSINRLSGELPANICKIPSTLSKCKQLEELNLGFNN 166
           L       +          +  + L    L+G        + STL     L+EL+L  N 
Sbjct: 68  LGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGA---GCGVLSSTLRTLPTLQELHLSDNL 124

Query: 167 LSGAIPKEIGNLTKLKEIISTITNSTVCEIPREIGNLPYLARLALATNNLVGVVPVTIFN 226
           L  A  + +                              L +L L   +L       + +
Sbjct: 125 LGDAGLQLLCEGLL--------------------DPQCRLEKLQLEYCSLSAASCEPLAS 164

Query: 227 M----SALKEISLLNNSLSGS----LPSRIDLSLPNVETLNLGINSFS----GTIPSSIT 274
           +       KE+++ NN ++ +    L   +  S   +E L L     +      +   + 
Sbjct: 165 VLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVA 224

Query: 275 NSSKLSDLELGENLFSG-----FIPNTIGNLRNLEFGNIADNYLTSSTPELSFLSS-LTN 328
           + + L +L LG N           P  +     L    I +  +T+       L   L  
Sbjct: 225 SKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKG--CGDLCRVLRA 282

Query: 329 CKKLKVLIVTGNPL--DGI--LPKSIGNFSLSLETILMANCSISG----NIPQVVGNLSN 380
            + LK L + GN L  +G   L +++      LE++ + +CS +     +   V+     
Sbjct: 283 KESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRF 342

Query: 381 LLVLELGGNNLTGPIPVTFSQL-----QTLQAFDLTRNKL----AGPITDELCHLARLHS 431
           LL L++  N L         Q        L+   L    +       +   L     L  
Sbjct: 343 LLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRE 402

Query: 432 LVLQGNKFSGSIPSCLG-----NLTSVRVLYLGLNIFT 464
           L L  N    +    L          +  L L    ++
Sbjct: 403 LDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS 440

>4apc_A Serine/threonine-protein kinase NEK1; transferase; 2.10A {Homo sapiens} Length = 350

 Score = 71.3 bits (175), Expect = 3e-13
 Identities = 33/176 (18%), Positives = 60/176 (34%), Gaps = 60/176 (34%)

Query: 640 NGMEVAVKV--FHQQYERALKSFEDECEVRKRIRHRNLVKIISSS---------LEY--- 685
           +G +  +K     +   +  +    E  V   ++H N+V+   S          ++Y   
Sbjct: 48  DGRQYVIKEINISRMSSKEREESRREVAVLANMKHPNIVQYRESFEENGSLYIVMDYCEG 107

Query: 686 ------------------------------LHFGHSIPIIHCDLKPSNVLLDEDMVAHIS 715
                                         L   H   I+H D+K  N+ L +D    + 
Sbjct: 108 GDLFKRINAQKGVLFQEDQILDWFVQICLALKHVHDRKILHRDIKSQNIFLTKDGTVQLG 167

Query: 716 DFGIAKLLSGEDQLSKQTQTLA-TIGYMAPE------YGTKGRVSTRGDVCSFGII 764
           DFGIA++L+   +L    +    T  Y++PE      Y  K       D+ + G +
Sbjct: 168 DFGIARVLNSTVEL---ARACIGTPYYLSPEICENKPYNNK------SDIWALGCV 214

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 71.0 bits (174), Expect = 3e-13
 Identities = 43/240 (17%), Positives = 78/240 (32%), Gaps = 22/240 (9%)

Query: 76  SSLQTLDLSHNKLSGNIPSSIF-NMHTLKLLDFSDNQLFGSLSSFIF-NMSSMTTIDLS- 132
            +   L     KL   I    F     L+ ++ S N +   + + +F N+  +  I +  
Sbjct: 30  RNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88

Query: 133 INRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEI-GNLTKLKEIISTITNS 191
            N L   +       P        L+ L +    +   +P     +  +   ++    N 
Sbjct: 89  ANNLL-YIN------PEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKV-LLDIQDNI 139

Query: 192 TVCEIPREI--GNLPYLARLALATNNLVGVVPVTIFNMSALKEISLL-NNSLSGSLPSRI 248
            +  I R    G       L L  N +   +  + FN + L E++L  NN+L   LP+ +
Sbjct: 140 NIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLE-ELPNDV 197

Query: 249 DLSLPNVETLNLGINSFSGTIPSSI-TNSSKLSDLELGENLFSGFIPNTIGNLRNLEFGN 307
                    L++       ++PS    N  KL       NL        +  L       
Sbjct: 198 FHGASGPVILDISRTRIH-SLPSYGLENLKKLRARST-YNLKKLPTLEKLVALMEASLTY 255

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 68.7 bits (168), Expect = 2e-12
 Identities = 41/233 (17%), Positives = 79/233 (33%), Gaps = 19/233 (8%)

Query: 57  LNISSFNLQGTITPQ-LGNLSSLQTLDLSHNKLSGNIPSSIF-NMHTLKLLDFSDNQLFG 114
           L      L+  I          L+ +++S N +   I + +F N+  L  +         
Sbjct: 35  LRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLL 93

Query: 115 SLSSFIF-NMSSMTTIDLSINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPK 173
            ++   F N+ ++  + +S   +   LP              Q   L++  N     I +
Sbjct: 94  YINPEAFQNLPNLQYLLISNTGIK-HLP------DVHKIHSLQKVLLDIQDNINIHTIER 146

Query: 174 E-IGNLTKLKEIISTITNSTVCEIPREIGNLPYLARLALATNNLVGVVPVTIF-NMSALK 231
                L+    I+    N  + EI     N   L  L L+ NN +  +P  +F   S   
Sbjct: 147 NSFVGLSFESVILWLNKNG-IQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPV 205

Query: 232 EISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSITNSSKLSDLEL 284
            + +    +  SLPS    +L  +   +         +P ++     L +  L
Sbjct: 206 ILDISRTRIH-SLPSYGLENLKKLRARSTYNLK---KLP-TLEKLVALMEASL 253

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 68.3 bits (167), Expect = 2e-12
 Identities = 39/245 (15%), Positives = 74/245 (30%), Gaps = 13/245 (5%)

Query: 195 EIPREIGNLPYLARLALATNNLVGVVPVTIFNMSALKEISLLNNSLSGSLPSRIDLSLPN 254
           EIP ++        L      L  +          L++I +  N +   + + +  +LP 
Sbjct: 23  EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPK 80

Query: 255 VETLNL-GINSFSGTIPSSI-TNSSKLSDLELGENLFSGFIPNTIGNLRNLEFGNIADNY 312
           +  + +   N+    I      N   L  L +              +       +I DN 
Sbjct: 81  LHEIRIEKANNLL-YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNI 139

Query: 313 LTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGILPKSIGNFSLSLETILMANCSISGNIP 372
              +    SF   L+   +  +L +  N +  I   S  N +   E  L  N ++     
Sbjct: 140 NIHTIERNSF-VGLSF--ESVILWLNKNGIQEI-HNSAFNGTQLDELNLSDNNNLEELPN 195

Query: 373 QVVGNLSNLLVLELGGNNLTGPIPVTFSQLQTLQAFDLTRNKLAGPITDELCHLARLHSL 432
            V    S  ++L++    +          L+ L+A      K    +      L  L   
Sbjct: 196 DVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLKKLPTLE----KLVALMEA 251

Query: 433 VLQGN 437
            L   
Sbjct: 252 SLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 61.4 bits (149), Expect = 4e-10
 Identities = 44/273 (16%), Positives = 86/273 (31%), Gaps = 45/273 (16%)

Query: 220 VPVTIFNMSALKEISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSI-TNSSK 278
           +P  +       E+  +   L   +         ++E + +  N     I + + +N  K
Sbjct: 24  IPSDLP--RNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPK 80

Query: 279 LSDLEL-GENLFSGFIPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIV 337
           L ++ +   N      P    NL NL++  I++  +    P++  + SL    +  +L +
Sbjct: 81  LHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHL-PDVHKIHSL----QKVLLDI 135

Query: 338 TGNP-LDGILPKSIGNFSLSLETILMANCSISGNIPQVVGNLSNLLVLELGGNNLTGPIP 396
             N  +  I   S    S     + +    I   I     N + L  L L  NN      
Sbjct: 136 QDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNN------ 188

Query: 397 VTFSQLQTLQ--AFDLTRNKLAGPITDELCHLARLHSLVLQGNKFSGSIPS-CLGNLTSV 453
                L+ L    F                  +    L +   +   S+PS  L NL  +
Sbjct: 189 ----NLEELPNDVFH---------------GASGPVILDISRTRIH-SLPSYGLENLKKL 228

Query: 454 RVLYLGLNIFTSVLSSTIWNLKDILFIDVSSNF 486
           R           + +     L  ++   ++   
Sbjct: 229 RARS--TYNLKKLPTLE--KLVALMEASLTYPS 257

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 58.7 bits (142), Expect = 3e-09
 Identities = 41/212 (19%), Positives = 78/212 (36%), Gaps = 12/212 (5%)

Query: 268 TIPSSITNSSKLSDLELGENLFSGFIPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLT 327
            IPS +       +L                   +LE   I+ N +        F S+L 
Sbjct: 23  EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVF-SNLP 79

Query: 328 NCKKLKVLIVTGNPLDGILPKSIGNFSLSLETILMANCSISGNIPQVV-GNLSNLLVLEL 386
              ++++     N L  I P++  N   +L+ +L++N  I  ++P V   +    ++L++
Sbjct: 80  KLHEIRIE--KANNLLYINPEAFQNLP-NLQYLLISNTGIK-HLPDVHKIHSLQKVLLDI 135

Query: 387 GGNNLTGPIPV-TFSQLQT-LQAFDLTRNKLAGPITDELCHLARLHSLVLQGNKFSGSIP 444
             N     I   +F  L        L +N +   I +   +  +L  L L  N     +P
Sbjct: 136 QDNINIHTIERNSFVGLSFESVILWLNKNGIQE-IHNSAFNGTQLDELNLSDNNNLEELP 194

Query: 445 S-CLGNLTSVRVLYLGLNIFTSVLSSTIWNLK 475
           +      +   +L +      S+ S  + NLK
Sbjct: 195 NDVFHGASGPVILDISRTRIHSLPSYGLENLK 226

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 43.7 bits (103), Expect = 2e-04
 Identities = 19/122 (15%), Positives = 43/122 (35%), Gaps = 8/122 (6%)

Query: 366 SISGNIPQVVGNLSNLLVLELGGNNLTGPIPVTFSQLQTLQAFDLTRNKLAGPITDE-LC 424
            I  ++P       N + L      L       FS    L+  ++++N +   I  +   
Sbjct: 23  EIPSDLP------RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFS 76

Query: 425 HLARLHSLVLQGNKFSGSIPS-CLGNLTSVRVLYLGLNIFTSVLSSTIWNLKDILFIDVS 483
           +L +LH + ++       I      NL +++ L +       +      +    + +D+ 
Sbjct: 77  NLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQ 136

Query: 484 SN 485
            N
Sbjct: 137 DN 138

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A* Length = 325

 Score = 70.4 bits (173), Expect = 3e-13
 Identities = 33/168 (19%), Positives = 63/168 (37%), Gaps = 41/168 (24%)

Query: 637 GIGNGMEVAVKVFHQQY-ERALKSFEDECEVRKRIRHRNLVK---IISSS-----LEYLH 687
           G    + V +KV   +   ++ ++  D       + H ++V+   +   S      +YL 
Sbjct: 38  GESIKIPVCIKVIEDKSGRQSFQAVTDHMLAIGSLDHAHIVRLLGLCPGSSLQLVTQYLP 97

Query: 688 FG----------HSIPI----------------------IHCDLKPSNVLLDEDMVAHIS 715
            G           ++                        +H +L   NVLL       ++
Sbjct: 98  LGSLLDHVRQHRGALGPQLLLNWGVQIAKGMYYLEEHGMVHRNLAARNVLLKSPSQVQVA 157

Query: 716 DFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGI 763
           DFG+A LL  +D+    ++    I +MA E    G+ + + DV S+G+
Sbjct: 158 DFGVADLLPPDDKQLLYSEAKTPIKWMALESIHFGKYTHQSDVWSYGV 205

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A* Length = 434

 Score = 71.4 bits (175), Expect = 4e-13
 Identities = 37/129 (28%), Positives = 61/129 (47%), Gaps = 25/129 (19%)

Query: 658 KSFEDECEVRKRIRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLD---------- 707
              ++  +++K     +L++ I+S + +LH   S+ IIH DLKP N+L+           
Sbjct: 103 NVSDENLKLQKEYNPISLLRQIASGVAHLH---SLKIIHRDLKPQNILVSTSSRFTADQQ 159

Query: 708 ---EDMVAHISDFGIAKLL-SGEDQLSKQTQTLA-TIGYMAPE-------YGTKGRVSTR 755
              E++   ISDFG+ K L SG+          + T G+ APE         TK R++  
Sbjct: 160 TGAENLRILISDFGLCKKLDSGQSSFRTNLNNPSGTSGWRAPELLEESNNLQTKRRLTRS 219

Query: 756 GDVCSFGII 764
            D+ S G +
Sbjct: 220 IDIFSMGCV 228

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B Length = 454

 Score = 71.3 bits (175), Expect = 4e-13
 Identities = 43/169 (25%), Positives = 71/169 (42%), Gaps = 44/169 (26%)

Query: 637 GIGNG-MEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVK-----------IIS---- 680
              N   +VAVK        ++++F  E  V K ++H  LVK           II+    
Sbjct: 207 ATYNKHTKVAVKTMKPGSM-SVEAFLAEANVMKTLQHDKLVKLHAVVTKEPIYIITEFMA 265

Query: 681 --SSLEYL--HFGHSIPI----------------------IHCDLKPSNVLLDEDMVAHI 714
             S L++L    G   P+                      IH DL+ +N+L+   +V  I
Sbjct: 266 KGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIEQRNYIHRDLRAANILVSASLVCKI 325

Query: 715 SDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGI 763
           +DFG+A+++   +  +++      I + APE    G  + + DV SFGI
Sbjct: 326 ADFGLARVIEDNEYTAREGAKFP-IKWTAPEAINFGSFTIKSDVWSFGI 373

>1uu3_A HPDK1, 3-phosphoinositide dependent protein kinase-1; PKB, inhibitor, LY333531, diabetes, cancer, transferase, serine/threonine-protein kinase; HET: SEP LY4; 1.7A {Homo sapiens} SCOP: d.144.1.7 PDB: 1okz_A* 1oky_A* 1uu7_A* 1uu8_A* 2biy_A* 3rwp_A* 2xch_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* ... Length = 310

 Score = 69.9 bits (172), Expect = 5e-13
 Identities = 33/68 (48%), Positives = 44/68 (64%), Gaps = 5/68 (7%)

Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTL-A 737
           I S+LEYLH      IIH DLKP N+LL+EDM   I+DFG AK+LS E + ++   +   
Sbjct: 139 IVSALEYLH---GKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQAR-ANSFVG 194

Query: 738 TIGYMAPE 745
           T  Y++PE
Sbjct: 195 TAQYVSPE 202

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 68.5 bits (168), Expect = 6e-13
 Identities = 48/257 (18%), Positives = 86/257 (33%), Gaps = 43/257 (16%)

Query: 57  LNISSFNLQGTITPQLGNLSSLQTLDLSHNKLSGNIPSSIF-NMHTLKLLDFSDNQLFGS 115
             ++  ++     P L    S QTL L    L   IPS  F N+  +  +  S +     
Sbjct: 16  FRVTCKDI--QRIPSL--PPSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQ 70

Query: 116 LSSFIF-NMSSMTTIDLSINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKE 174
           L S  F N+S +T I++   R    +       P  L +   L+ L +    L       
Sbjct: 71  LESHSFYNLSKVTHIEIRNTRNLTYID------PDALKELPLLKFLGIFNTGLK-----M 119

Query: 175 IGNLTKLKEIISTITNSTVCEIPREIGNLPYLARLALATNNLVGVVPVTIFN--MSALKE 232
             +LTK+                    +      L +  N  +  +PV  F    +    
Sbjct: 120 FPDLTKV-------------------YSTDIFFILEITDNPYMTSIPVNAFQGLCNETLT 160

Query: 233 ISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSI--TNSSKLSDLELGENLFS 290
           + L NN  + S+      +   ++ + L  N +   I         S  S L++ +   +
Sbjct: 161 LKLYNNGFT-SVQGYA-FNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT 218

Query: 291 GFIPNTIGNLRNLEFGN 307
                 + +L+ L   N
Sbjct: 219 ALPSKGLEHLKELIARN 235

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 67.3 bits (165), Expect = 1e-12
 Identities = 27/192 (14%), Positives = 60/192 (31%), Gaps = 13/192 (6%)

Query: 74  NLSSLQTLDLSHNKLSGNIPSSIF-NMHTLKLLDFSDNQLFGSLSSFIF-NMSSMTTIDL 131
           NL ++  + +S +     + S  F N+  +  ++  + +    +       +  +  + +
Sbjct: 53  NLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGI 112

Query: 132 SINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEI-GNLTKLKEIISTITN 190
               L    P       + +        L +  N    +IP      L      +    N
Sbjct: 113 FNTGLK-MFPDL-----TKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNN 166

Query: 191 STVCEIPREIGNLPYLARLALATNNLVGVVPVTIFN--MSALKEISLLNNSLSGSLPSRI 248
                +     N   L  + L  N  + V+    F    S    + +   S++ +LPS+ 
Sbjct: 167 G-FTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSKG 224

Query: 249 DLSLPNVETLNL 260
              L  +   N 
Sbjct: 225 LEHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 52.3 bits (126), Expect = 1e-07
 Identities = 38/233 (16%), Positives = 73/233 (31%), Gaps = 31/233 (13%)

Query: 203 LPYLARLALATNNLVGVVPVTIFNMSALKEISLLNNSLSGSLPSRIDLSLPNVETLNLGI 262
            P    L L   +L  +      N+  +  I +  +     L S    +L  V  + +  
Sbjct: 30  PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRN 89

Query: 263 NSFSGTIPSSITNSSKLSDLELGENLFSGFIPNTIGNLRNLEFGNIADNYLTSSTPELSF 322
                 I                        P+ +  L  L+F  I +  L    P+L+ 
Sbjct: 90  TRNLTYID-----------------------PDALKELPLLKFLGIFNTGLKMF-PDLTK 125

Query: 323 LSSLTNCKKLKVLIVTGNP-LDGILPKSIGNFSLSLETILMANCSISGNIPQVVGNLSNL 381
           + S        +L +T NP +  I   +         T+ + N   + ++     N + L
Sbjct: 126 VYSTDI---FFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKL 181

Query: 382 LVLELGGNNLTGPIPV-TFSQLQT-LQAFDLTRNKLAGPITDELCHLARLHSL 432
             + L  N     I    F  + +     D+++  +    +  L HL  L + 
Sbjct: 182 DAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIAR 234

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 68.9 bits (169), Expect = 6e-13
 Identities = 60/216 (27%), Positives = 95/216 (43%), Gaps = 41/216 (18%)

Query: 76  SSLQTLDLSHNKLSGNIPSSIF-NMHTLKLLDFSDNQLFGSLSSFIFN-MSSMTTIDLSI 133
           +  + LDL  NKLS ++PS  F  +  L+LL  +DN+L  +L + IF  + ++ T+ ++ 
Sbjct: 37  ADTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKL-QTLPAGIFKELKNLETLWVTD 94

Query: 134 NRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEI-GNLTKLKEIISTITNST 192
           N+L   LP  +            L EL L  N L  ++P  +  +LTKL           
Sbjct: 95  NKLQ-ALPIGVFDQLV------NLAELRLDRNQLK-SLPPRVFDSLTKLTY--------- 137

Query: 193 VCEIPREIGNLPYLARLALATNNLVGVVPVTIF-NMSALKEISLLNNSLSGSLPSRIDLS 251
                           L+L  N L   +P  +F  +++LKE+ L NN L   +P      
Sbjct: 138 ----------------LSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLK-RVPEGAFDK 179

Query: 252 LPNVETLNLGINSFSGTIPSSITNSSKLSDLELGEN 287
           L  ++TL L  N        +  +  KL  L+L EN
Sbjct: 180 LTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 66.2 bits (162), Expect = 5e-12
 Identities = 50/169 (29%), Positives = 82/169 (48%), Gaps = 16/169 (9%)

Query: 74  NLSSLQTLDLSHNKLSGNIPSSIFN-MHTLKLLDFSDNQLFGSLSSFIF-NMSSMTTIDL 131
            L+ L+ L L+ NKL   +P+ IF  +  L+ L  +DN+L  +L   +F  + ++  + L
Sbjct: 59  RLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKL-QALPIGVFDQLVNLAELRL 116

Query: 132 SINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEI-GNLTKLKEIISTITN 190
             N+L   LP     +  +L+K   L  L+LG+N L  ++PK +   LT LKE+   + N
Sbjct: 117 DRNQLK-SLPPR---VFDSLTK---LTYLSLGYNELQ-SLPKGVFDKLTSLKEL--RLYN 166

Query: 191 STVCEIPREI-GNLPYLARLALATNNLVGVVPVTIFNMSALKEISLLNN 238
           + +  +P      L  L  L L  N L  V      ++  LK + L  N
Sbjct: 167 NQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 48.8 bits (117), Expect = 3e-06
 Identities = 52/223 (23%), Positives = 71/223 (31%), Gaps = 42/223 (18%)

Query: 268 TIPSSITNSSKLSDLELGENLFSGFIPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLT 327
            IPS+I   +    L+L  N  S         L  L    + DN L +  P   F   L 
Sbjct: 30  AIPSNI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQT-LPAGIF-KELK 85

Query: 328 NCKKLKVLIVTGNPLDGILPKSIGNFSLSLETILMANCSISGNIPQVVGNLSNLLVLELG 387
           N   L+ L VT N L                       ++   +      L NL  L L 
Sbjct: 86  N---LETLWVTDNKLQ----------------------ALPIGVFD---QLVNLAELRLD 117

Query: 388 GNNLTGPIPVTFSQLQTLQAFDLTRNKL----AGPITDELCHLARLHSLVLQGNKFSGSI 443
            N L    P  F  L  L    L  N+L     G        L  L  L L  N+    +
Sbjct: 118 RNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFD----KLTSLKELRLYNNQLK-RV 172

Query: 444 PSCL-GNLTSVRVLYLGLNIFTSVLSSTIWNLKDILFIDVSSN 485
           P      LT ++ L L  N    V      +L+ +  + +  N
Sbjct: 173 PEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 46.1 bits (110), Expect = 2e-05
 Identities = 56/219 (25%), Positives = 76/219 (34%), Gaps = 35/219 (15%)

Query: 220 VPVTIFNMSALKEISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSI-TNSSK 278
           +P  I   +  K++ L +N LS SLPS+    L  +  L L  N    T+P+ I      
Sbjct: 31  IPSNIP--ADTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKN 86

Query: 279 LSDLELGENLFSGFIPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVT 338
           L  L + +N            L NL    +  N L S  P   F  SLT    L  L + 
Sbjct: 87  LETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKS-LPPRVF-DSLTK---LTYLSLG 141

Query: 339 GNPLDGILPKSIGNFSLSLETILMANCSISGNIPQVVGNLSNLLVLELGGNNLTGPIPVT 398
            N L  +     G F                        L++L  L L  N L       
Sbjct: 142 YNELQSL---PKGVFD----------------------KLTSLKELRLYNNQLKRVPEGA 176

Query: 399 FSQLQTLQAFDLTRNKLAGPITDELCHLARLHSLVLQGN 437
           F +L  L+   L  N+L          L +L  L LQ N
Sbjct: 177 FDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A* Length = 299

 Score = 69.3 bits (170), Expect = 6e-13
 Identities = 26/96 (27%), Positives = 44/96 (45%), Gaps = 13/96 (13%)

Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLAT 738
           I+ ++E+LH   S  ++H DLKPSN+    D V  + DFG+   +  +++       +  
Sbjct: 127 IAEAVEFLH---SKGLMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLTPMPA 183

Query: 739 IG----------YMAPEYGTKGRVSTRGDVCSFGII 764
                       YM+PE       S + D+ S G+I
Sbjct: 184 YARHTGQVGTKLYMSPEQIHGNSYSHKVDIFSLGLI 219

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A Length = 377

 Score = 70.0 bits (171), Expect = 7e-13
 Identities = 14/97 (14%), Positives = 35/97 (36%), Gaps = 20/97 (20%)

Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLAT 738
           +   L  LH      ++H  L+P +++LD+     ++ F          +   +  +  +
Sbjct: 215 VIRLLASLH---HYGLVHTYLRPVDIVLDQRGGVFLTGFEHLV------RDGARVVSSVS 265

Query: 739 IGYMAPEY-----------GTKGRVSTRGDVCSFGII 764
            G+  PE              +  ++   D  + G++
Sbjct: 266 RGFEPPELEARRATISYHRDRRTLMTFSFDAWALGLV 302

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7 Length = 287

 Score = 68.8 bits (169), Expect = 8e-13
 Identities = 35/177 (19%), Positives = 66/177 (37%), Gaps = 54/177 (30%)

Query: 635 LIGIGNGMEVAVKVFHQQY-ERALKSFEDECEVRKRIRHRNLVKI--------------- 678
                  ++VA+KV  Q   +   +    E ++  ++ +  +V++               
Sbjct: 31  YRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQAEALMLVMEM 90

Query: 679 ----------------------------ISSSLEYL---HFGHSIPIIHCDLKPSNVLLD 707
                                       +S  ++YL   +F      +H DL   NVLL 
Sbjct: 91  AGGGPLHKFLVGKREEIPVSNVAELLHQVSMGMKYLEEKNF------VHRDLAARNVLLV 144

Query: 708 EDMVAHISDFGIAKLL-SGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGI 763
               A ISDFG++K L + +   + ++     + + APE     + S+R DV S+G+
Sbjct: 145 NRHYAKISDFGLSKALGADDSYYTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGV 201

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A Length = 450

 Score = 70.5 bits (173), Expect = 8e-13
 Identities = 46/170 (27%), Positives = 67/170 (39%), Gaps = 50/170 (29%)

Query: 637 GIGNGMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVK-------------IIS--- 680
           G   G +VAVK          ++F  E  V  ++RH NLV+             I++   
Sbjct: 212 GDYRGNKVAVKCIKNDATA--QAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYM 269

Query: 681 ---SSLEYL--HFGHSIP----------------------IIHCDLKPSNVLLDEDMVAH 713
              S ++YL       +                        +H DL   NVL+ ED VA 
Sbjct: 270 AKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGNNFVHRDLAARNVLVSEDNVAK 329

Query: 714 ISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGI 763
           +SDFG+ K     +  S Q      + + APE   + + ST+ DV SFGI
Sbjct: 330 VSDFGLTK-----EASSTQDTGKLPVKWTAPEALREKKFSTKSDVWSFGI 374

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A* Length = 371

 Score = 69.7 bits (170), Expect = 9e-13
 Identities = 13/125 (10%), Positives = 31/125 (24%), Gaps = 11/125 (8%)

Query: 642 MEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVKIISSSLEYLHFGHSIPIIHCDLKP 701
           M  A       +   L            +    L   +      L       ++H    P
Sbjct: 167 MPAASVDLELLFST-LDFVYVFRGDEGILALHILTAQLIRLAANLQSKG---LVHGHFTP 222

Query: 702 SNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEY--GTKGRVSTRGDVC 759
            N+ +  D    + D      +      ++   +   + Y   E+   +    +   +  
Sbjct: 223 DNLFIMPDGRLMLGDVSALWKVG-----TRGPASSVPVTYAPREFLNASTATFTHALNAW 277

Query: 760 SFGII 764
             G+ 
Sbjct: 278 QLGLS 282

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vid_A* 3hng_A* Length = 359

 Score = 69.6 bits (170), Expect = 9e-13
 Identities = 33/169 (19%), Positives = 60/169 (35%), Gaps = 7/169 (4%)

Query: 598 WKSRTGPSNDGINSPQAIRRFSYHELLRATDRFSENNLIGIGNGMEVAVKVFHQQYERAL 657
              R           +  +   Y   +   D     + I        +  V  +      
Sbjct: 119 RSKRNEFVPYKTKGARFRQGKDYVGAIP-VDLKRRLDSITSSQSSASSGFVEEKSLSDVE 177

Query: 658 KSFEDECEVRKRIRHRNLVKI---ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHI 714
           +    E   +  +   +L+     ++  +E+L    S   IH DL   N+LL E  V  I
Sbjct: 178 EEEAPEDLYKDFLTLEHLICYSFQVAKGMEFLA---SRKCIHRDLAARNILLSEKNVVKI 234

Query: 715 SDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGI 763
            DFG+A+ +  +    ++      + +MAPE       + + DV SFG+
Sbjct: 235 CDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGV 283

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens} Length = 295

 Score = 68.9 bits (169), Expect = 9e-13
 Identities = 42/172 (24%), Positives = 71/172 (41%), Gaps = 52/172 (30%)

Query: 640 NGMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVKIISSS---------LEYL---- 686
           N + +A+K   ++  R  +   +E  + K ++H+N+V+ + S          +E +    
Sbjct: 46  NQVRIAIKEIPERDSRYSQPLHEEIALHKHLKHKNIVQYLGSFSENGFIKIFMEQVPGGS 105

Query: 687 -------HFG-----------------------HSIPIIHCDLKPSNVLLDEDM-VAHIS 715
                   +G                       H   I+H D+K  NVL++    V  IS
Sbjct: 106 LSALLRSKWGPLKDNEQTIGFYTKQILEGLKYLHDNQIVHRDIKGDNVLINTYSGVLKIS 165

Query: 716 DFGIAKLLSGEDQLSKQTQTLA-TIGYMAPE---YGTKGRVSTRGDVCSFGI 763
           DFG +K L+G   ++  T+T   T+ YMAPE    G +G      D+ S G 
Sbjct: 166 DFGTSKRLAG---INPCTETFTGTLQYMAPEIIDKGPRGY-GKAADIWSLGC 213

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens} Length = 327

 Score = 68.8 bits (169), Expect = 1e-12
 Identities = 36/163 (22%), Positives = 60/163 (36%), Gaps = 41/163 (25%)

Query: 642 MEVAVKVFHQQY-ERALKSFEDECEVRKRIRHRNLVK---IISSS--------------L 683
           + VA+K   +    +A K   DE  V   + + ++ +   I  +S              L
Sbjct: 45  IPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTSTVQLITQLMPFGCLL 104

Query: 684 EYLH-FGHSIPI----------------------IHCDLKPSNVLLDEDMVAHISDFGIA 720
           +Y+     +I                        +H DL   NVL+       I+DFG+A
Sbjct: 105 DYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLA 164

Query: 721 KLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGI 763
           KLL  E++          I +MA E       + + DV S+G+
Sbjct: 165 KLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGV 207

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A* Length = 291

 Score = 68.4 bits (168), Expect = 1e-12
 Identities = 37/164 (22%), Positives = 59/164 (35%), Gaps = 42/164 (25%)

Query: 642 MEVAVKVFHQQY--ERALKSFEDECEVRKRIRHRNLVKIIS-----------------SS 682
             VAVK+   +            E  V +++ +  +V++I                    
Sbjct: 45  KTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICEAESWMLVMEMAELGPL 104

Query: 683 LEYLHFGHSIPI----------------------IHCDLKPSNVLLDEDMVAHISDFGIA 720
            +YL     +                        +H DL   NVLL     A ISDFG++
Sbjct: 105 NKYLQQNRHVKDKNIIELVHQVSMGMKYLEESNFVHRDLAARNVLLVTQHYAKISDFGLS 164

Query: 721 KLL-SGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGI 763
           K L + E+    QT     + + APE     + S++ DV SFG+
Sbjct: 165 KALRADENYYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGV 208

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 69.0 bits (169), Expect = 1e-12
 Identities = 54/357 (15%), Positives = 116/357 (32%), Gaps = 77/357 (21%)

Query: 72  LGNLSSLQTLDLSHNKLSG----NIPSSIFNMHTLKLLDFSDNQL----FGSLSSFIFNM 123
           +   S ++   L  + ++     ++ + +    ++K +  S N +       LS  I + 
Sbjct: 1   MARFS-IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASK 59

Query: 124 SSMTTIDLS---INRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEIGNLTK 180
             +   + S     R+  E+P  +  +   L KC +L  + L  N               
Sbjct: 60  KDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA-------------- 105

Query: 181 LKEIISTITNSTVCEIPREIGNLPYLARLALATNNLVGVVPVTIFNMSALKEISLLNNSL 240
                     +    +   +     L  L L  N L G          AL+E+++   + 
Sbjct: 106 -------FGPTAQEPLIDFLSKHTPLEHLYLHNNGL-GPQAGAKI-ARALQELAVNKKAK 156

Query: 241 SGSLPSRIDLSLPNVETLNLGINSFSG----TIPSSITNSSKLSDLELGEN--------- 287
           +           P + ++  G N            +  +   L  +++ +N         
Sbjct: 157 NA----------PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEH 206

Query: 288 -LFSGFIPNTIGNLRNLEFGNIADNYLTSS-TPELSFLSSLTNCKKLKVLIVTGNPLDGI 345
            L  G        L+ L   ++ DN  T   +  L+   +L +   L+ L +    L   
Sbjct: 207 LLLEGLAYCQ--ELKVL---DLQDNTFTHLGSSALA--IALKSWPNLRELGLNDCLLSAR 259

Query: 346 LPKSIG-----NFSLSLETILMANCSISGN-----IPQVVGNLSNLLVLELGGNNLT 392
              ++        ++ L+T+ +    I  +        +   + +LL LEL GN  +
Sbjct: 260 GAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} Length = 298

 Score = 68.1 bits (167), Expect = 2e-12
 Identities = 32/170 (18%), Positives = 63/170 (37%), Gaps = 45/170 (26%)

Query: 639 GNGMEVAVKVFHQQY-ERALKSFEDECEVRKRIRHRNLVKII---SSS-------LEY-- 685
            N ++ A+K   +    + +++F  E  + + + H N++ +I             L Y  
Sbjct: 47  QNRIQCAIKSLSRITEMQQVEAFLREGLLMRGLNHPNVLALIGIMLPPEGLPHVLLPYMC 106

Query: 686 ----LHF----GHSIPI----------------------IHCDLKPSNVLLDEDMVAHIS 715
               L F      +  +                      +H DL   N +LDE     ++
Sbjct: 107 HGDLLQFIRSPQRNPTVKDLISFGLQVARGMEYLAEQKFVHRDLAARNCMLDESFTVKVA 166

Query: 716 DFGIAKLLSGED--QLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGI 763
           DFG+A+ +   +   + +       + + A E     R +T+ DV SFG+
Sbjct: 167 DFGLARDILDREYYSVQQHRHARLPVKWTALESLQTYRFTTKSDVWSFGV 216

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens} Length = 613

 Score = 70.0 bits (171), Expect = 2e-12
 Identities = 34/164 (20%), Positives = 65/164 (39%), Gaps = 42/164 (25%)

Query: 642 MEVAVKVFHQQY-ERALKSFEDECEVRKRIRHRNLVK---IISSS-----LEYLHFG--- 689
           ++VA+KV  Q   +   +    E ++  ++ +  +V+   +  +      +E    G   
Sbjct: 364 IDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQAEALMLVMEMAGGGPLH 423

Query: 690 -------HSIPI----------------------IHCDLKPSNVLLDEDMVAHISDFGIA 720
                    IP+                      +H +L   NVLL     A ISDFG++
Sbjct: 424 KFLVGKREEIPVSNVAELLHQVSMGMKYLEEKNFVHRNLAARNVLLVNRHYAKISDFGLS 483

Query: 721 KLL-SGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGI 763
           K L + +   + ++     + + APE     + S+R DV S+G+
Sbjct: 484 KALGADDSYYTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGV 527

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B* Length = 291

 Score = 68.0 bits (167), Expect = 2e-12
 Identities = 35/169 (20%), Positives = 52/169 (30%), Gaps = 44/169 (26%)

Query: 639 GNGMEVAVKVFHQQY---ERALKSFEDECEVRKRIRHRNLVK---IISSS---------- 682
           G  + VAVK           A+  F  E      + HRNL++   ++ +           
Sbjct: 44  GKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLTPPMKMVTELAP 103

Query: 683 ----LEYLH-FGHSIPI----------------------IHCDLKPSNVLLDEDMVAHIS 715
               L+ L        +                      IH DL   N+LL    +  I 
Sbjct: 104 LGSLLDRLRKHQGHFLLGTLSRYAVQVAEGMGYLESKRFIHRDLAARNLLLATRDLVKIG 163

Query: 716 DFGIAKLL-SGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGI 763
           DFG+ + L   +D    Q        + APE       S   D   FG+
Sbjct: 164 DFGLMRALPQNDDHYVMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGV 212

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A Length = 290

 Score = 67.7 bits (166), Expect = 2e-12
 Identities = 31/85 (36%), Positives = 43/85 (50%), Gaps = 9/85 (10%)

Query: 683 LEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYM 742
           LE+LH   S+  IH D+KPSNVL++      + DFGI+  L   D ++K         YM
Sbjct: 122 LEHLHSKLSV--IHRDVKPSNVLINALGQVKMCDFGISGYLV--DDVAKDIDA-GCKPYM 176

Query: 743 APE----YGTKGRVSTRGDVCSFGI 763
           APE       +   S + D+ S GI
Sbjct: 177 APERINPELNQKGYSVKSDIWSLGI 201

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens} Length = 319

 Score = 68.2 bits (167), Expect = 2e-12
 Identities = 36/210 (17%), Positives = 69/210 (32%), Gaps = 79/210 (37%)

Query: 628 DRFSENNLIGIGN------------GMEVAVKVFH-QQYERALKSFEDECEVRKRIRHRN 674
             +  ++++G G             G   A+KVF+   + R +     E EV K++ H+N
Sbjct: 9   HLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKN 68

Query: 675 LVKI------------------------------------------------ISSSLEYL 686
           +VK+                                                +   + +L
Sbjct: 69  IVKLFAIEEETTTRHKVLIMEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHL 128

Query: 687 HFGHSIPIIHCDLKPSNVLL----DEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYM 742
                  I+H ++KP N++     D   V  ++DFG A+ L  ++Q         T  Y+
Sbjct: 129 ---RENGIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAARELEDDEQF---VSLYGTEEYL 182

Query: 743 APEYGTKGRVSTRG--------DVCSFGII 764
            P+   +  +            D+ S G+ 
Sbjct: 183 HPDMYERAVLRKDHQKKYGATVDLWSIGVT 212

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens} Length = 382

 Score = 68.5 bits (168), Expect = 2e-12
 Identities = 34/108 (31%), Positives = 53/108 (49%), Gaps = 6/108 (5%)

Query: 659 SFEDECEVRKRIRHRNLVKI---ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHIS 715
           S+       +++  ++LV     ++  +EYL    S   IH DL   NVL+ ED V  I+
Sbjct: 177 SYNPSHNPEEQLSSKDLVSCAYQVARGMEYLA---SKKCIHRDLAARNVLVTEDNVMKIA 233

Query: 716 DFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGI 763
           DFG+A+ +   D   K T     + +MAPE       + + DV SFG+
Sbjct: 234 DFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGV 281

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A* Length = 327

 Score = 67.7 bits (166), Expect = 3e-12
 Identities = 32/85 (37%), Positives = 42/85 (49%), Gaps = 9/85 (10%)

Query: 683 LEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYM 742
           L +L     I  IH D+KPSN+LLD      + DFGI+  L   D ++K T+      YM
Sbjct: 138 LNHLKENLKI--IHRDIKPSNILLDRSGNIKLCDFGISGQLV--DSIAK-TRDAGCRPYM 192

Query: 743 APE----YGTKGRVSTRGDVCSFGI 763
           APE      ++     R DV S GI
Sbjct: 193 APERIDPSASRQGYDVRSDVWSLGI 217

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A* Length = 310

 Score = 67.7 bits (166), Expect = 3e-12
 Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 17/92 (18%)

Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLAT 738
           + S+LE++H   S  ++H D+KP+NV +    V  + D G+ +  S +   +  +    T
Sbjct: 145 LCSALEHMH---SRRVMHRDIKPANVFITATGVVKLGDLGLGRFFSSKTTAAH-SLV-GT 199

Query: 739 IGYMAPE------YGTKGRVSTRGDVCSFGII 764
             YM+PE      Y  K       D+ S G +
Sbjct: 200 PYYMSPERIHENGYNFK------SDIWSLGCL 225

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A Length = 365

 Score = 67.8 bits (166), Expect = 3e-12
 Identities = 26/73 (35%), Positives = 45/73 (61%), Gaps = 6/73 (8%)

Query: 673 RNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQ 732
           R++++ +  ++ +LH  +   I+H DLKP N+LLD++M   +SDFG +  L   ++L   
Sbjct: 203 RSIMRSLLEAVSFLHANN---IVHRDLKPENILLDDNMQIRLSDFGFSCHLEPGEKL--- 256

Query: 733 TQTLATIGYMAPE 745
            +   T GY+APE
Sbjct: 257 RELCGTPGYLAPE 269

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 3q6w_A* 3r7o_A* 3q6u_A* 3cth_A* 3ce3_A* 3ctj_A* ... Length = 298

 Score = 67.3 bits (165), Expect = 3e-12
 Identities = 35/173 (20%), Positives = 63/173 (36%), Gaps = 51/173 (29%)

Query: 639 GNGMEVAVKVFHQQY-ERALKSFEDECEVRKRIRHRNLVKI------------------- 678
           G  +  AVK  ++      +  F  E  + K   H N++ +                   
Sbjct: 51  GKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYMK 110

Query: 679 --------------------------ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVA 712
                                     ++  ++YL    S   +H DL   N +LDE    
Sbjct: 111 HGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKYLA---SKKFVHRDLAARNCMLDEKFTV 167

Query: 713 HISDFGIAKLLSGEDQLSKQTQTLAT--IGYMAPEYGTKGRVSTRGDVCSFGI 763
            ++DFG+A+ +  ++  S   +T A   + +MA E     + +T+ DV SFG+
Sbjct: 168 KVADFGLARDMYDKEYYSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGV 220

>3pvu_A Beta-adrenergic receptor kinase 1; transferase, serine/threonine-protein kinase, ATP-binding, I membrane; HET: QRW; 2.48A {Bos taurus} PDB: 3psc_A* 3pvw_A* 1omw_A 1ym7_A 2bcj_A* 3cik_A 3krw_A* 3krx_A* 1bak_A Length = 695

 Score = 69.1 bits (169), Expect = 3e-12
 Identities = 27/68 (39%), Positives = 37/68 (54%), Gaps = 9/68 (13%)

Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLA- 737
           I   LE++H   +  +++ DLKP+N+LLDE     ISD G+A   S      K+      
Sbjct: 301 IILGLEHMH---NRFVVYRDLKPANILLDEHGHVRISDLGLACDFSK-----KKPHASVG 352

Query: 738 TIGYMAPE 745
           T GYMAPE
Sbjct: 353 THGYMAPE 360

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B Length = 543

 Score = 68.7 bits (168), Expect = 3e-12
 Identities = 32/68 (47%), Positives = 39/68 (57%), Gaps = 7/68 (10%)

Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLA- 737
           I S LE+LH      II+ DLKP NVLLD+D    ISD G+A  L        +T+  A 
Sbjct: 298 IVSGLEHLH---QRNIIYRDLKPENVLLDDDGNVRISDLGLAVELKAGQ---TKTKGYAG 351

Query: 738 TIGYMAPE 745
           T G+MAPE
Sbjct: 352 TPGFMAPE 359

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens} Length = 317

 Score = 67.4 bits (165), Expect = 4e-12
 Identities = 29/163 (17%), Positives = 54/163 (33%), Gaps = 55/163 (33%)

Query: 638 IGNGMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVKIISSS-------------LE 684
           + +G   A+K      ++  +  + E ++ +   H N++++++               L 
Sbjct: 51  LHDGHFYALKRILCHEQQDREEAQREADMHRLFNHPNILRLVAYCLRERGAKHEAWLLLP 110

Query: 685 Y-----------------------------------LHFGHSIPIIHCDLKPSNVLLDED 709
           +                                   L   H+    H DLKP+N+LL ++
Sbjct: 111 FFKRGTLWNEIERLKDKGNFLTEDQILWLLLGICRGLEAIHAKGYAHRDLKPTNILLGDE 170

Query: 710 MVAHISDFGIAKLLSGEDQLSKQTQTLA-------TIGYMAPE 745
               + D G         + S+Q  TL        TI Y APE
Sbjct: 171 GQPVLMDLGSMNQACIHVEGSRQALTLQDWAAQRCTISYRAPE 213

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A Length = 303

 Score = 67.0 bits (164), Expect = 4e-12
 Identities = 36/126 (28%), Positives = 48/126 (38%), Gaps = 34/126 (26%)

Query: 658 KSFEDECEVRKRIRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDF 717
              +   E  +      L + I  +L Y+H   S  IIH DLKP N+ +DE     I DF
Sbjct: 110 NLNQQRDEYWR------LFRQILEALSYIH---SQGIIHRDLKPMNIFIDESRNVKIGDF 160

Query: 718 GIAKLLSGEDQLSKQTQTLAT---------IG---YMAPE-------YGTKGRVSTRGDV 758
           G+AK +     + K                IG   Y+A E       Y  K       D+
Sbjct: 161 GLAKNVHRSLDILKLDSQNLPGSSDNLTSAIGTAMYVATEVLDGTGHYNEK------IDM 214

Query: 759 CSFGII 764
            S GII
Sbjct: 215 YSLGII 220

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A* Length = 278

 Score = 66.5 bits (163), Expect = 5e-12
 Identities = 46/170 (27%), Positives = 67/170 (39%), Gaps = 50/170 (29%)

Query: 637 GIGNGMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVK-------------IIS--- 680
           G   G +VAVK          ++F  E  V  ++RH NLV+             I++   
Sbjct: 40  GDYRGNKVAVKCIKNDATA--QAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYM 97

Query: 681 ---SSLEYL--HFGHSIPI----------------------IHCDLKPSNVLLDEDMVAH 713
              S ++YL       +                        +H DL   NVL+ ED VA 
Sbjct: 98  AKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGNNFVHRDLAARNVLVSEDNVAK 157

Query: 714 ISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGI 763
           +SDFG+ K     +  S Q      + + APE   + + ST+ DV SFGI
Sbjct: 158 VSDFGLTK-----EASSTQDTGKLPVKWTAPEALREKKFSTKSDVWSFGI 202

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens} Length = 298

 Score = 66.5 bits (163), Expect = 5e-12
 Identities = 32/90 (35%), Positives = 44/90 (48%), Gaps = 10/90 (11%)

Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLA- 737
           +   +EYLH      IIH D+KPSN+L+ ED    I+DFG++    G D L         
Sbjct: 146 LIKGIEYLH---YQKIIHRDIKPSNLLVGEDGHIKIADFGVSNEFKGSDAL---LSNTVG 199

Query: 738 TIGYMAPE--YGTKGRVS-TRGDVCSFGII 764
           T  +MAPE    T+   S    DV + G+ 
Sbjct: 200 TPAFMAPESLSETRKIFSGKALDVWAMGVT 229

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ... Length = 288

 Score = 66.1 bits (162), Expect = 6e-12
 Identities = 39/167 (23%), Positives = 65/167 (38%), Gaps = 44/167 (26%)

Query: 639 GNGMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVK------------IIS------ 680
              + VAVK   +     ++ F  E  V K I+H NLV+            II+      
Sbjct: 36  KYSLTVAVKTLKEDTM-EVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYG 94

Query: 681 SSLEYL--HFGHSIPI----------------------IHCDLKPSNVLLDEDMVAHISD 716
           + L+YL       +                        IH DL   N L+ E+ +  ++D
Sbjct: 95  NLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVAD 154

Query: 717 FGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGI 763
           FG+++L++  D  +        I + APE     + S + DV +FG+
Sbjct: 155 FGLSRLMT-GDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGV 200

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens} Length = 318

 Score = 66.6 bits (163), Expect = 6e-12
 Identities = 35/86 (40%), Positives = 43/86 (50%), Gaps = 10/86 (11%)

Query: 683 LEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYM 742
           L YL   H +  IH D+KPSN+LLDE     + DFGI+  L   D  +K  ++     YM
Sbjct: 137 LYYLKEKHGV--IHRDVKPSNILLDERGQIKLCDFGISGRLV--DDKAK-DRSAGCAAYM 191

Query: 743 APE-----YGTKGRVSTRGDVCSFGI 763
           APE       TK     R DV S GI
Sbjct: 192 APERIDPPDPTKPDYDIRADVWSLGI 217

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A* Length = 676

 Score = 68.2 bits (166), Expect = 6e-12
 Identities = 43/186 (23%), Positives = 66/186 (35%), Gaps = 74/186 (39%)

Query: 641 GMEVAVKVFHQQ-YERALKSFEDECEVRKRIRHRNLVKI--------------------- 678
           G +VA+K   Q+   +  + +  E ++ K++ H N+V                       
Sbjct: 39  GEQVAIKQCRQELSPKNRERWCLEIQIMKKLNHPNVVSAREVPDGLQKLAPNDLPLLAME 98

Query: 679 -------------------------------ISSSLEYLHFGHSIPIIHCDLKPSNVLLD 707
                                          ISS+L YLH      IIH DLKP N++L 
Sbjct: 99  YCEGGDLRKYLNQFENCCGLKEGPIRTLLSDISSALRYLHENR---IIHRDLKPENIVLQ 155

Query: 708 ---EDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPE------YGTKGRVSTRGDV 758
              + ++  I D G AK L   +     T+ + T+ Y+APE      Y          D 
Sbjct: 156 PGPQRLIHKIIDLGYAKELDQGELC---TEFVGTLQYLAPELLEQKKYTVT------VDY 206

Query: 759 CSFGII 764
            SFG +
Sbjct: 207 WSFGTL 212

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A* Length = 313

 Score = 66.5 bits (163), Expect = 6e-12
 Identities = 24/100 (24%), Positives = 42/100 (42%), Gaps = 6/100 (6%)

Query: 667 RKRIRHRNLVKI---ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLL 723
              +   +L+     ++  + +L    S   IH DL   N+LL    +  I DFG+A+ +
Sbjct: 139 ELALDLEDLLSFSYQVAKGMAFLA---SKNCIHRDLAARNILLTHGRITKICDFGLARDI 195

Query: 724 SGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGI 763
             +     +      + +MAPE       +   DV S+GI
Sbjct: 196 KNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGI 235

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens} Length = 349

 Score = 67.0 bits (164), Expect = 7e-12
 Identities = 34/101 (33%), Positives = 48/101 (47%), Gaps = 21/101 (20%)

Query: 673 RNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLL---DEDMVAHISDFGIAKLLSGEDQL 729
            + VK I  ++ YLH      I+H DLKP N+L      D    I+DFG++K++  +  +
Sbjct: 151 ADAVKQILEAVAYLH---ENGIVHRDLKPENLLYATPAPDAPLKIADFGLSKIVEHQVLM 207

Query: 730 SKQTQTLATIGYMAPE------YGTKGRVSTRGDVCSFGII 764
                   T GY APE      YG +  V    D+ S GII
Sbjct: 208 ---KTVCGTPGYCAPEILRGCAYGPE--V----DMWSVGII 239

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A* Length = 656

 Score = 68.0 bits (166), Expect = 7e-12
 Identities = 33/169 (19%), Positives = 59/169 (34%), Gaps = 48/169 (28%)

Query: 639 GNGMEVAVKVFHQQY-ERALKSFEDECEVRKRIRHRNLVKI------------------- 678
              M VA+K       +   + F  E    ++  H ++VK+                   
Sbjct: 416 NPAMAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVITENPVWIIMELCTLG 475

Query: 679 ------------------------ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHI 714
                                   +S++L YL    S   +H D+   NVL+  +    +
Sbjct: 476 ELRSFLQVRKFSLDLASLILYAYQLSTALAYLE---SKRFVHRDIAARNVLVSSNDCVKL 532

Query: 715 SDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGI 763
            DFG+++ +       K ++    I +MAPE     R ++  DV  FG+
Sbjct: 533 GDFGLSRYMEDSTY-YKASKGKLPIKWMAPESINFRRFTSASDVWMFGV 580

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A Length = 325

 Score = 66.2 bits (162), Expect = 8e-12
 Identities = 25/95 (26%), Positives = 48/95 (50%), Gaps = 8/95 (8%)

Query: 673 RNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLL---DEDMVAHISDFGIAKLLSGEDQL 729
             +++ + S++ ++H    + ++H DLKP N+L    ++++   I DFG A+L   ++Q 
Sbjct: 109 SYIMRKLVSAVSHMH---DVGVVHRDLKPENLLFTDENDNLEIKIIDFGFARLKPPDNQ- 164

Query: 730 SKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
                   T+ Y APE   +       D+ S G+I
Sbjct: 165 -PLKTPCFTLHYAAPELLNQNGYDESCDLWSLGVI 198

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 3lau_A* 2wtv_A* ... Length = 279

 Score = 65.7 bits (161), Expect = 8e-12
 Identities = 32/180 (17%), Positives = 59/180 (32%), Gaps = 67/180 (37%)

Query: 638 IGNGMEVAVKVFHQQY---ERALKSFEDECEVRKRIRHRNLVKI---------------- 678
             +   +A+KV  +              E E++  +RH N++++                
Sbjct: 31  KQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDATRVYLILEY 90

Query: 679 ---------------------------ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMV 711
                                      ++++L Y H      +IH D+KP N+LL     
Sbjct: 91  APLGTVYRELQKLSKFDEQRTATYITELANALSYCHSKR---VIHRDIKPENLLLGSAGE 147

Query: 712 AHISDFGIAKLLSGEDQLSKQTQTL-ATIGYMAPE------YGTKGRVSTRGDVCSFGII 764
             I+DFG +           +   L  T+ Y+ PE      +  K       D+ S G++
Sbjct: 148 LKIADFGWSVHAPSS-----RRTDLCGTLDYLPPEMIEGRMHDEK------VDLWSLGVL 196

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens} Length = 396

 Score = 66.8 bits (163), Expect = 9e-12
 Identities = 36/210 (17%), Positives = 69/210 (32%), Gaps = 79/210 (37%)

Query: 628 DRFSENNLIGIGN------------GMEVAVKVFH-QQYERALKSFEDECEVRKRIRHRN 674
             +  ++++G G             G   A+KVF+   + R +     E EV K++ H+N
Sbjct: 9   HLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKN 68

Query: 675 LVKI------------------------------------------------ISSSLEYL 686
           +VK+                                                +   + +L
Sbjct: 69  IVKLFAIEEETTTRHKVLIMEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHL 128

Query: 687 HFGHSIPIIHCDLKPSNVLL----DEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYM 742
                  I+H ++KP N++     D   V  ++DFG A+ L  ++Q         T  Y+
Sbjct: 129 ---RENGIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAARELEDDEQF---VSLYGTEEYL 182

Query: 743 APEYGTKGRVSTRG--------DVCSFGII 764
            P+   +  +            D+ S G+ 
Sbjct: 183 HPDMYERAVLRKDHQKKYGATVDLWSIGVT 212

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A Length = 351

 Score = 66.2 bits (162), Expect = 1e-11
 Identities = 28/101 (27%), Positives = 41/101 (40%), Gaps = 20/101 (19%)

Query: 673 RNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLL---DEDMVAHISDFGIAKLLSGEDQL 729
            + ++ I  +L Y H      IIH D+KP  VLL   +      +  FG+A  L     +
Sbjct: 133 SHYMRQILEALRYCH---DNNIIHRDVKPHCVLLASKENSAPVKLGGFGVAIQLGESGLV 189

Query: 730 SKQTQTLATIGYMAPE------YGTKGRVSTRGDVCSFGII 764
           +     + T  +MAPE      YG         DV   G+I
Sbjct: 190 AG--GRVGTPHFMAPEVVKREPYGKP------VDVWGCGVI 222

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A* Length = 336

 Score = 65.9 bits (161), Expect = 1e-11
 Identities = 38/215 (17%), Positives = 61/215 (28%), Gaps = 62/215 (28%)

Query: 605 SNDGINSPQAIRRFSYHELLRATDRFSENNLIGIG------------NGMEVAVKVFHQQ 652
            N+G+   + ++   Y E        +    +G G             G + AVK    +
Sbjct: 36  DNEGVLLTEKLKPVDY-EYREEVHWMTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLE 94

Query: 653 YERALKSFEDECEVRKRIRHRNLVKIISSS---------LEYL----------HFG---- 689
                    +E      +    +V +  +          +E L            G    
Sbjct: 95  -----VFRVEELVACAGLSSPRIVPLYGAVREGPWVNIFMELLEGGSLGQLIKQMGCLPE 149

Query: 690 -----------------HSIPIIHCDLKPSNVLLDED-MVAHISDFGIAKLLSGEDQLSK 731
                            H+  I+H D+K  NVLL  D   A + DFG A  L  +     
Sbjct: 150 DRALYYLGQALEGLEYLHTRRILHGDVKADNVLLSSDGSRAALCDFGHALCLQPDGLGKS 209

Query: 732 QTQTLATIG---YMAPEYGTKGRVSTRGDVCSFGI 763
                   G   +MAPE         + D+ S   
Sbjct: 210 LLTGDYIPGTETHMAPEVVMGKPCDAKVDIWSSCC 244

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens} Length = 325

 Score = 65.8 bits (161), Expect = 1e-11
 Identities = 37/174 (21%), Positives = 62/174 (35%), Gaps = 55/174 (31%)

Query: 639 GNGMEVAVKVFHQQY-ERALKSFEDECEVRKRIRHRNLVKI------------------- 678
              + VA+K     Y ER  + F  E  +  +  H N++++                   
Sbjct: 75  QRDVPVAIKALKAGYTERQRRDFLSEASIMGQFDHPNIIRLEGVVTRGRLAMIVTEYMEN 134

Query: 679 -------------------------ISSSLEYL---HFGHSIPIIHCDLKPSNVLLDEDM 710
                                    + + + YL    +      +H DL   NVL+D ++
Sbjct: 135 GSLDTFLRTHDGQFTIMQLVGMLRGVGAGMRYLSDLGY------VHRDLAARNVLVDSNL 188

Query: 711 VAHISDFGIAKLL-SGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGI 763
           V  +SDFG++++L    D     T     I + APE       S+  DV SFG+
Sbjct: 189 VCKVSDFGLSRVLEDDPDAAYTTTGGKIPIRWTAPEAIAFRTFSSASDVWSFGV 242

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* Length = 360

 Score = 66.0 bits (161), Expect = 1e-11
 Identities = 31/113 (27%), Positives = 50/113 (44%), Gaps = 19/113 (16%)

Query: 659 SFEDECEVRKRIRHRNLVKIISSS---LEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHIS 715
           S +   +   RI  + L K+  +    L YL   H I  +H D+KPSN+L++      + 
Sbjct: 117 SLDQVLKKAGRIPEQILGKVSIAVIKGLTYLREKHKI--MHRDVKPSNILVNSRGEIKLC 174

Query: 716 DFGIAKLLSGEDQLSKQTQTLA-----TIGYMAPEYGTKGRVSTRGDVCSFGI 763
           DFG++  L           ++A     T  YM+PE       S + D+ S G+
Sbjct: 175 DFGVSGQL---------IDSMANSFVGTRSYMSPERLQGTHYSVQSDIWSMGL 218

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7 Length = 373

 Score = 66.3 bits (162), Expect = 1e-11
 Identities = 33/176 (18%), Positives = 62/176 (35%), Gaps = 57/176 (32%)

Query: 639 GNGMEVAVKVFHQQY-ERALKSFEDECEVRKRIRHRNLVKI------------------- 678
           G  +  AVK  ++      +  F  E  + K   H N++ +                   
Sbjct: 115 GKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYMK 174

Query: 679 --------------------------ISSSLEYL---HFGHSIPIIHCDLKPSNVLLDED 709
                                     ++  +++L    F      +H DL   N +LDE 
Sbjct: 175 HGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKFLASKKF------VHRDLAARNCMLDEK 228

Query: 710 MVAHISDFGIAKLLSGEDQLS--KQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGI 763
               ++DFG+A+ +  ++  S   +T     + +MA E     + +T+ DV SFG+
Sbjct: 229 FTVKVADFGLARDMYDKEFDSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGV 284

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* 2jiu_A* ... Length = 327

 Score = 65.8 bits (161), Expect = 1e-11
 Identities = 36/163 (22%), Positives = 60/163 (36%), Gaps = 41/163 (25%)

Query: 642 MEVAVKVFHQQY-ERALKSFEDECEVRKRIRHRNLVK---IISSS-----LEYLHFG--- 689
           + VA+K   +    +A K   DE  V   + + ++ +   I  +S      + + FG   
Sbjct: 45  IPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTSTVQLITQLMPFGCLL 104

Query: 690 -------HSIPI----------------------IHCDLKPSNVLLDEDMVAHISDFGIA 720
                   +I                        +H DL   NVL+       I+DFG+A
Sbjct: 105 DYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLA 164

Query: 721 KLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGI 763
           KLL  E++          I +MA E       + + DV S+G+
Sbjct: 165 KLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGV 207

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X* Length = 348

 Score = 65.9 bits (161), Expect = 1e-11
 Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 10/95 (10%)

Query: 673 RNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQ 732
           + ++K + +S  Y+H   +I   H D+KPSN+L+D++    +SDFG ++ +       K+
Sbjct: 154 KCIIKSVLNSFSYIHNEKNI--CHRDVKPSNILMDKNGRVKLSDFGESEYMV-----DKK 206

Query: 733 TQTLA-TIGYMAPE--YGTKGRVSTRGDVCSFGII 764
            +    T  +M PE           + D+ S GI 
Sbjct: 207 IKGSRGTYEFMPPEFFSNESSYNGAKVDIWSLGIC 241

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A* Length = 281

 Score = 64.9 bits (159), Expect = 1e-11
 Identities = 30/166 (18%), Positives = 61/166 (36%), Gaps = 42/166 (25%)

Query: 639 GNGMEVAVKVFHQQY-ERALKSFEDECEVRKRIRHRNLVK---IISSS------------ 682
              + VA+K       +   + F  E    ++  H ++VK   +I+ +            
Sbjct: 41  NPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVITENPVWIIMELCTLG 100

Query: 683 --LEYL-HFGHSIPI----------------------IHCDLKPSNVLLDEDMVAHISDF 717
               +L    +S+ +                      +H D+   NVL+  +    + DF
Sbjct: 101 ELRSFLQVRKYSLDLASLILYAYQLSTALAYLESKRFVHRDIAARNVLVSSNDCVKLGDF 160

Query: 718 GIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGI 763
           G+++ +  +    K ++    I +MAPE     R ++  DV  FG+
Sbjct: 161 GLSRYME-DSTYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGV 205

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7 Length = 344

 Score = 65.8 bits (161), Expect = 2e-11
 Identities = 30/120 (25%), Positives = 53/120 (44%), Gaps = 6/120 (5%)

Query: 647 KVFHQQYERALKSFEDECEVRKRIRHRNLVKI---ISSSLEYLHFGHSIPIIHCDLKPSN 703
           K    + E   +   +E E    +   +L+     ++  +E+L F      +H DL   N
Sbjct: 146 KFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEFKS---CVHRDLAARN 202

Query: 704 VLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGI 763
           VL+    V  I DFG+A+ +  +     +      + +MAPE   +G  + + DV S+GI
Sbjct: 203 VLVTHGKVVKICDFGLARDIMSDSNYVVRGNARLPVKWMAPESLFEGIYTIKSDVWSYGI 262

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ... Length = 322

 Score = 65.4 bits (160), Expect = 2e-11
 Identities = 30/116 (25%), Positives = 53/116 (45%), Gaps = 6/116 (5%)

Query: 651 QQYERALKSFEDECEVRKRIRHRNLVKI---ISSSLEYLHFGHSIPIIHCDLKPSNVLLD 707
           + Y R+L+       V        ++++   I+  + YL+   +   +H DL   N ++ 
Sbjct: 116 KSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLN---ANKFVHRDLAARNCMVA 172

Query: 708 EDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGI 763
           ED    I DFG+ + +   D   K  + L  + +M+PE    G  +T  DV SFG+
Sbjct: 173 EDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGV 228

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens} Length = 444

 Score = 66.2 bits (162), Expect = 2e-11
 Identities = 27/102 (26%), Positives = 48/102 (47%), Gaps = 22/102 (21%)

Query: 673 RNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLL---DEDMVAHISDFGIAKLLSGEDQL 729
            + ++ I  ++ + H    + ++H +LKP N+LL    +     ++DFG+A  + GE Q 
Sbjct: 113 SHCIQQILEAVLHCH---QMGVVHRNLKPENLLLASKLKGAAVKLADFGLAIEVEGEQQA 169

Query: 730 SKQTQTLA-TIGYMAPE------YGTKGRVSTRGDVCSFGII 764
                  A T GY++PE      YG         D+ + G+I
Sbjct: 170 ---WFGFAGTPGYLSPEVLRKDPYGKP------VDLWACGVI 202

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ... Length = 279

 Score = 64.5 bits (158), Expect = 2e-11
 Identities = 40/165 (24%), Positives = 72/165 (43%), Gaps = 43/165 (26%)

Query: 640 NGMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVK-----------IIS------SS 682
              +VAVK   Q    +  +F  E  + K+++H+ LV+           II+      S 
Sbjct: 36  GHTKVAVKSLKQGSM-SPDAFLAEANLMKQLQHQRLVRLYAVVTQEPIYIITEYMENGSL 94

Query: 683 LEYL--HFGHSIPI----------------------IHCDLKPSNVLLDEDMVAHISDFG 718
           +++L    G  + I                      IH DL+ +N+L+ + +   I+DFG
Sbjct: 95  VDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNYIHRDLRAANILVSDTLSCKIADFG 154

Query: 719 IAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGI 763
           +A+L+  +++ + +      I + APE    G  + + DV SFGI
Sbjct: 155 LARLIE-DNEYTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGI 198

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A* Length = 277

 Score = 64.2 bits (157), Expect = 2e-11
 Identities = 32/178 (17%), Positives = 58/178 (32%), Gaps = 63/178 (35%)

Query: 638 IGNGMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVKI------------------- 678
            G  +  A K   + +   +  F+ E E+ K + H N++++                   
Sbjct: 31  KGTRIRRAAKKIPKYFVEDVDRFKQEIEIMKSLDHPNIIRLYETFEDNTDIYLVMELCTG 90

Query: 679 ------------------------ISSSLEYLHFGHSIPIIHCDLKPSNVLL---DEDMV 711
                                   + S++ Y H  +   + H DLKP N L      D  
Sbjct: 91  GELFERVVHKRVFRESDAARIMKDVLSAVAYCHKLN---VAHRDLKPENFLFLTDSPDSP 147

Query: 712 AHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPE-----YGTKGRVSTRGDVCSFGII 764
             + DFG+A        +      + T  Y++P+     YG +       D  S G++
Sbjct: 148 LKLIDFGLAARFKPGKMM---RTKVGTPYYVSPQVLEGLYGPE------CDEWSAGVM 196

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A* Length = 313

 Score = 64.6 bits (158), Expect = 2e-11
 Identities = 33/178 (18%), Positives = 64/178 (35%), Gaps = 53/178 (29%)

Query: 639 GNGMEVAVKVFHQQY--ERALKSFEDECEVRKRIRHRNLVKIISSS-------------- 682
           G  ++VAVK        +R ++ F  E    K   H N+++++                 
Sbjct: 60  GTSLKVAVKTMKLDNSSQREIEEFLSEAACMKDFSHPNVIRLLGVCIEMSSQGIPKPMVI 119

Query: 683 LEYLHFG---------------HSIPI----------------------IHCDLKPSNVL 705
           L ++ +G                 IP+                      +H DL   N +
Sbjct: 120 LPFMKYGDLHTYLLYSRLETGPKHIPLQTLLKFMVDIALGMEYLSNRNFLHRDLAARNCM 179

Query: 706 LDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGI 763
           L +DM   ++DFG++K +   D   +       + ++A E       +++ DV +FG+
Sbjct: 180 LRDDMTVCVADFGLSKKIYSGDYYRQGRIAKMPVKWIAIESLADRVYTSKSDVWAFGV 237

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A* Length = 297

 Score = 64.6 bits (158), Expect = 2e-11
 Identities = 40/165 (24%), Positives = 67/165 (40%), Gaps = 41/165 (24%)

Query: 638 IGNGMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVKIISSSL---------EY--- 685
           +  G EVA++  + Q +   +   +E  V +  ++ N+V  + S L         EY   
Sbjct: 42  VATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEYLAG 101

Query: 686 ---------------------------LHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFG 718
                                      L F HS  +IH D+K  N+LL  D    ++DFG
Sbjct: 102 GSLTDVVTETCMDEGQIAAVCRECLQALEFLHSNQVIHRDIKSDNILLGMDGSVKLTDFG 161

Query: 719 IAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGI 763
               ++   + SK++  + T  +MAPE  T+     + D+ S GI
Sbjct: 162 FCAQIT--PEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGI 204

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7 Length = 387

 Score = 65.1 bits (159), Expect = 3e-11
 Identities = 30/170 (17%), Positives = 56/170 (32%), Gaps = 46/170 (27%)

Query: 638 IGNGMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVK-------------------- 677
              G     K  +  Y     + ++E  +  ++ H  L+                     
Sbjct: 73  KATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPKLINLHDAFEDKYEMVLILEFLSG 132

Query: 678 ------IISSSLEY---------------LHFGHSIPIIHCDLKPSNVLL--DEDMVAHI 714
                 I +   +                L   H   I+H D+KP N++    +     I
Sbjct: 133 GELFDRIAAEDYKMSEAEVINYMRQACEGLKHMHEHSIVHLDIKPENIMCETKKASSVKI 192

Query: 715 SDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
            DFG+A  L+ ++ +     T AT  + APE   +  V    D+ + G++
Sbjct: 193 IDFGLATKLNPDEIV---KVTTATAEFAAPEIVDREPVGFYTDMWAIGVL 239

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ... Length = 284

 Score = 64.2 bits (157), Expect = 3e-11
 Identities = 31/179 (17%), Positives = 60/179 (33%), Gaps = 65/179 (36%)

Query: 638 IGNGMEVAVKVFHQQY---ERALKSFEDECEVRKRIRHRNLVKI---------------- 678
             N   +A+KV  +     E        E E++  +RH N++++                
Sbjct: 36  KQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHLRHPNILRMYNYFHDRKRIYLMLEF 95

Query: 679 ---------------------------ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMV 711
                                      ++ +L Y H      +IH D+KP N+L+     
Sbjct: 96  APRGELYKELQKHGRFDEQRSATFMEELADALHYCHERK---VIHRDIKPENLLMGYKGE 152

Query: 712 AHISDFGIAKLLSGEDQLSKQTQTL-ATIGYMAPEYGTKGRVSTRG-----DVCSFGII 764
             I+DFG +           + +T+  T+ Y+ PE      +  +      D+   G++
Sbjct: 153 LKIADFGWSVHAPSL-----RRRTMCGTLDYLPPEM-----IEGKTHDEKVDLWCAGVL 201

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens} Length = 278

 Score = 64.1 bits (157), Expect = 3e-11
 Identities = 33/104 (31%), Positives = 46/104 (44%), Gaps = 13/104 (12%)

Query: 662 DECEVRKRIRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAK 721
            E E R  +        I + + YLH      I+H DL  SN+LL  +M   I+DFG+A 
Sbjct: 110 SENEARHFMHQ------IITGMLYLHSHG---ILHRDLTLSNLLLTRNMNIKIADFGLAT 160

Query: 722 LLSGEDQLSKQTQTL-ATIGYMAPEYGTKGRVSTRGDVCSFGII 764
            L    +      TL  T  Y++PE  T+       DV S G +
Sbjct: 161 QLKMPHEKHY---TLCGTPNYISPEIATRSAHGLESDVWSLGCM 201

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 64.9 bits (158), Expect = 3e-11
 Identities = 43/173 (24%), Positives = 70/173 (40%), Gaps = 23/173 (13%)

Query: 76  SSLQTLDLSHNKLSGNIPSSIF-NMHTLKLLDFSDNQLFGSLSSFIF-NMSSMTTIDLSI 133
           S    LDLSHN LS          +  L  L  S N L   +SS  F  + ++  +DLS 
Sbjct: 39  SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHL-NFISSEAFVPVPNLRYLDLSS 97

Query: 134 NRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEI-GNLTKLKEI------IS 186
           N L   L           S  + LE L L  N++   + +    ++ +L+++      IS
Sbjct: 98  NHLH-TLD------EFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQIS 149

Query: 187 TITNSTVCEIPREIGNLPYLARLALATNNLVGVVPVTIFNMSALKEISL-LNN 238
                 +    ++   LP L  L L++N L  +    +  + A  +  L L+N
Sbjct: 150 RFPVELI----KDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHN 198

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 62.6 bits (152), Expect = 2e-10
 Identities = 28/119 (23%), Positives = 53/119 (44%), Gaps = 8/119 (6%)

Query: 74  NLSSLQTLDLSHNKLSGNIPSSIF-NMHTLKLLDFSDNQLFGSLSSFIF-NMSSMTTIDL 131
            + +L+ LDLS N L   +   +F ++  L++L   +N +   +    F +M+ +  + L
Sbjct: 86  PVPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHI-VVVDRNAFEDMAQLQKLYL 143

Query: 132 SINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEIGNLTKLKEIISTITN 190
           S N++S   P  + K  + L K   L  L+L  N L      ++  L    +    + N
Sbjct: 144 SQNQIS-RFPVELIKDGNKLPK---LMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHN 198

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 57.5 bits (139), Expect = 7e-09
 Identities = 30/156 (19%), Positives = 60/156 (38%), Gaps = 5/156 (3%)

Query: 332 LKVLIVTGNPLDGILPKSIGNFSLSLETILMANCSISGNIPQVVGNLSNLLVLELGGNNL 391
             +L ++ N L  +  +       +L ++L+++  ++    +    + NL  L+L  N+L
Sbjct: 41  TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHL 100

Query: 392 TGPIPVTFSQLQTLQAFDLTRNKLAGPITDELCHLARLHSLVLQGNKFSGSIP----SCL 447
                  FS LQ L+   L  N +     +    +A+L  L L  N+ S   P       
Sbjct: 101 HTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDG 159

Query: 448 GNLTSVRVLYLGLNIFTSVLSSTIWNLKDILFIDVS 483
             L  + +L L  N    +  + +  L   +   + 
Sbjct: 160 NKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLY 195

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 55.2 bits (133), Expect = 4e-08
 Identities = 40/189 (21%), Positives = 72/189 (38%), Gaps = 22/189 (11%)

Query: 127 TTIDLSINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEI--GNLTKLKEI 184
             +  S  +L   +P ++   PS          L+L  NNLS  +  E     LT L  +
Sbjct: 21  NILSCSKQQLP-NVPQSL---PSYT------ALLDLSHNNLS-RLRAEWTPTRLTNLHSL 69

Query: 185 ISTITNSTVCEIPREI-GNLPYLARLALATNNLVGVVPVTIF-NMSALKEISLLNNSLSG 242
              ++++ +  I  E    +P L  L L++N+L   +   +F ++ AL+ + L NN +  
Sbjct: 70  --LLSHNHLNFISSEAFVPVPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIV- 125

Query: 243 SLPSRIDLSLPNVETLNLGINSFSGTIPSSITNSSKLSDLE---LGENLFSGFIPNTIGN 299
            +       +  ++ L L  N  S      I + +KL  L    L  N         +  
Sbjct: 126 VVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQK 185

Query: 300 LRNLEFGNI 308
           L       +
Sbjct: 186 LPAWVKNGL 194

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 52.2 bits (125), Expect = 3e-07
 Identities = 30/116 (25%), Positives = 47/116 (40%), Gaps = 7/116 (6%)

Query: 377 NLSNLLVLELGGNNLTGPIPV-TFSQLQTLQAFDLTRNKLAGPITDELCHLARLHSLVLQ 435
            L+NL  L L  N+L   I    F  +  L+  DL+ N L          L  L  L+L 
Sbjct: 62  RLTNLHSLLLSHNHLNF-ISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLY 120

Query: 436 GNKFSGSIPS-CLGNLTSVRVLYLGLNIFTSVLSSTIWN---LKDILFIDVSSNFL 487
            N     +      ++  ++ LYL  N  +      I +   L  ++ +D+SSN L
Sbjct: 121 NNHIV-VVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKL 175

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 47.5 bits (113), Expect = 1e-05
 Identities = 34/180 (18%), Positives = 67/180 (37%), Gaps = 18/180 (10%)

Query: 237 NNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSIT--NSSKLSDLELGENLFSGFIP 294
              L  ++P  +         L+L  N+ S  + +  T    + L  L L  N  +    
Sbjct: 27  KQQLP-NVPQSLP---SYTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLNFISS 81

Query: 295 NTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGILPKSIGNFS 354
                + NL + +++ N+L +    L   S L     L+VL++  N +  +   +  + +
Sbjct: 82  EAFVPVPNLRYLDLSSNHLHTLDEFL--FSDLQA---LEVLLLYNNHIVVVDRNAFEDMA 136

Query: 355 LSLETILMANCSISGNIP----QVVGNLSNLLVLELGGNNLTGPIPVTFSQLQTLQAFDL 410
             L+ + ++   IS   P    +    L  L++L+L  N L         +L       L
Sbjct: 137 -QLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGL 194

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A* Length = 484

 Score = 65.5 bits (160), Expect = 3e-11
 Identities = 28/95 (29%), Positives = 45/95 (47%), Gaps = 10/95 (10%)

Query: 673 RNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLL---DEDMVAHISDFGIAKLLSGEDQL 729
             +++ + S + Y+H      I+H DLKP N+LL    +D    I DFG++       ++
Sbjct: 129 ARIIRQVLSGITYMH---KNKIVHRDLKPENLLLESKSKDANIRIIDFGLSTHFEASKKM 185

Query: 730 SKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
                 + T  Y+APE    G    + DV S G+I
Sbjct: 186 ---KDKIGTAYYIAPEV-LHGTYDEKCDVWSTGVI 216

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A* Length = 321

 Score = 64.3 bits (157), Expect = 3e-11
 Identities = 37/165 (22%), Positives = 68/165 (41%), Gaps = 41/165 (24%)

Query: 638 IGNGMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVKIISSSL---------EY--- 685
             +G +VAVK+   + ++  +   +E  + +  +H N+V++  S L         E+   
Sbjct: 67  KHSGRQVAVKMMDLRKQQRRELLFNEVVIMRDYQHFNVVEMYKSYLVGEELWVLMEFLQG 126

Query: 686 ---------------------------LHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFG 718
                                      L + H+  +IH D+K  ++LL  D    +SDFG
Sbjct: 127 GALTDIVSQVRLNEEQIATVCEAVLQALAYLHAQGVIHRDIKSDSILLTLDGRVKLSDFG 186

Query: 719 IAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGI 763
               +S    + K+   + T  +MAPE  ++   +T  D+ S GI
Sbjct: 187 FCAQIS--KDVPKRKSLVGTPYWMAPEVISRSLYATEVDIWSLGI 229

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A* Length = 333

 Score = 64.2 bits (157), Expect = 4e-11
 Identities = 30/118 (25%), Positives = 51/118 (43%), Gaps = 6/118 (5%)

Query: 649 FHQQYERALKSFEDECEVRKRIRHRNLVKI---ISSSLEYLHFGHSIPIIHCDLKPSNVL 705
           F ++  R L++             R+L+     ++  + +L    S   IH D+   NVL
Sbjct: 140 FLRRKSRVLETDPAFAIANSTASTRDLLHFSSQVAQGMAFLA---SKNCIHRDVAARNVL 196

Query: 706 LDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGI 763
           L    VA I DFG+A+ +  +     +      + +MAPE       + + DV S+GI
Sbjct: 197 LTNGHVAKIGDFGLARDIMNDSNYIVKGNARLPVKWMAPESIFDCVYTVQSDVWSYGI 254

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A Length = 370

 Score = 64.7 bits (158), Expect = 4e-11
 Identities = 33/108 (30%), Positives = 55/108 (50%), Gaps = 6/108 (5%)

Query: 659 SFEDECEVRKRIRHRNLVKI---ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHIS 715
           S++      +++  ++LV     ++  +EYL    S   IH DL   NVL+ E+ V  I+
Sbjct: 189 SYDINRVPEEQMTFKDLVSCTYQLARGMEYLA---SQKCIHRDLAARNVLVTENNVMKIA 245

Query: 716 DFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGI 763
           DFG+A+ ++  D   K T     + +MAPE       + + DV SFG+
Sbjct: 246 DFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGV 293

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B Length = 362

 Score = 64.3 bits (157), Expect = 4e-11
 Identities = 26/101 (25%), Positives = 45/101 (44%), Gaps = 21/101 (20%)

Query: 673 RNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLL---DEDMVAHISDFGIAKLLSGEDQL 729
            + ++ I  S+ Y H   S  I+H +LKP N+LL    +     ++DFG+A  ++  +  
Sbjct: 131 SHCIQQILESIAYCH---SNGIVHRNLKPENLLLASKAKGAAVKLADFGLAIEVNDSEAW 187

Query: 730 SKQTQTLATIGYMAPE------YGTKGRVSTRGDVCSFGII 764
                   T GY++PE      Y          D+ + G+I
Sbjct: 188 ---HGFAGTPGYLSPEVLKKDPYSKP------VDIWACGVI 219

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A* Length = 576

 Score = 65.2 bits (159), Expect = 4e-11
 Identities = 26/68 (38%), Positives = 34/68 (50%), Gaps = 8/68 (11%)

Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLA- 737
           I   LE LH      I++ DLKP N+LLD+     ISD G+A          +  +    
Sbjct: 295 ICCGLEDLH---RERIVYRDLKPENILLDDHGHIRISDLGLAV----HVPEGQTIKGRVG 347

Query: 738 TIGYMAPE 745
           T+GYMAPE
Sbjct: 348 TVGYMAPE 355

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A* Length = 294

 Score = 63.8 bits (156), Expect = 5e-11
 Identities = 35/105 (33%), Positives = 48/105 (45%), Gaps = 15/105 (14%)

Query: 662 DECEVRKRIRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAK 721
            E E R  +R       I    +YLH      +IH DLK  N+ L+ED+   I DFG+A 
Sbjct: 113 TEPEARYYLRQ------IVLGCQYLH---RNRVIHRDLKLGNLFLNEDLEVKIGDFGLAT 163

Query: 722 LLSGEDQLSKQTQ--TLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
            +  + +  K+    T     Y+APE  +K   S   DV S G I
Sbjct: 164 KVEYDGER-KKVLCGTPN---YIAPEVLSKKGHSFEVDVWSIGCI 204

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II} Length = 345

 Score = 64.1 bits (156), Expect = 5e-11
 Identities = 28/98 (28%), Positives = 45/98 (45%), Gaps = 9/98 (9%)

Query: 673 RNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLL--DEDMVAHISDFGIAKLLSGEDQLS 730
            N+++ I S+L YLH   +  I H D+KP N L   ++     + DFG++K     +   
Sbjct: 171 SNIMRQIFSALHYLH---NQGICHRDIKPENFLFSTNKSFEIKLVDFGLSKEFYKLNNGE 227

Query: 731 KQT-QTLA-TIGYMAPE--YGTKGRVSTRGDVCSFGII 764
                T A T  ++APE    T      + D  S G++
Sbjct: 228 YYGMTTKAGTPYFVAPEVLNTTNESYGPKCDAWSAGVL 265

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A* Length = 494

 Score = 65.1 bits (159), Expect = 5e-11
 Identities = 30/95 (31%), Positives = 51/95 (53%), Gaps = 10/95 (10%)

Query: 673 RNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLL---DEDMVAHISDFGIAKLLSGEDQL 729
             ++K + S + YLH      I+H DLKP N+LL   ++D +  I DFG++ +   + ++
Sbjct: 139 AVIIKQVLSGVTYLH---KHNIVHRDLKPENLLLESKEKDALIKIVDFGLSAVFENQKKM 195

Query: 730 SKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
               + L T  Y+APE   + +   + DV S G+I
Sbjct: 196 ---KERLGTAYYIAPEV-LRKKYDEKCDVWSIGVI 226

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ... Length = 373

 Score = 64.3 bits (157), Expect = 5e-11
 Identities = 32/174 (18%), Positives = 63/174 (36%), Gaps = 55/174 (31%)

Query: 639 GNGMEVAVKVFHQQY-ERALKSFEDECEVRKRIRHRNLVKI------------------- 678
              + VA+K     Y E+  + F  E  +  +  H N++++                   
Sbjct: 71  KKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMEN 130

Query: 679 -------------------------ISSSLEYL---HFGHSIPIIHCDLKPSNVLLDEDM 710
                                    I+S ++YL    +      +H DL   N+L++ ++
Sbjct: 131 GSLDSFLRKHDAQFTVIQLVGMLRGIASGMKYLSDMGY------VHRDLAARNILINSNL 184

Query: 711 VAHISDFGIAKLL-SGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGI 763
           V  +SDFG+ ++L    +           I + +PE     + ++  DV S+GI
Sbjct: 185 VCKVSDFGLGRVLEDDPEAAYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGI 238

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A* Length = 322

 Score = 63.8 bits (156), Expect = 5e-11
 Identities = 37/158 (23%), Positives = 58/158 (36%), Gaps = 59/158 (37%)

Query: 641 GMEVAVKVFH--------QQYERALKSFEDECEVRKRIRHRNLVKI-------------- 678
             +VA+K+           +      + E E E+ K++ H  ++KI              
Sbjct: 35  CKKVAIKIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFDAEDYYIVLE 94

Query: 679 ----------------------------ISSSLEYLHFGHSIPIIHCDLKPSNVLL---D 707
                                       +  +++YL   H   IIH DLKP NVLL   +
Sbjct: 95  LMEGGELFDKVVGNKRLKEATCKLYFYQMLLAVQYL---HENGIIHRDLKPENVLLSSQE 151

Query: 708 EDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPE 745
           ED +  I+DFG +K+L     +        T  Y+APE
Sbjct: 152 EDCLIKITDFGHSKILGETSLM---RTLCGTPTYLAPE 186

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 63.1 bits (154), Expect = 5e-11
 Identities = 43/251 (17%), Positives = 85/251 (33%), Gaps = 40/251 (15%)

Query: 45  ITCDVNSHRVIGLNISSFNLQGTITPQLGNLSSLQTLDLSHNKLSGNIPSSIFNMHTLKL 104
           +  D      +  N+   ++  T       LS +Q  +  ++ +  ++ + +     LK 
Sbjct: 12  VFPDPGLANAVKQNLGKQSV--TDLVSQKELSGVQNFNGDNSNIQ-SL-AGMQFFTNLKE 67

Query: 105 LDFSDNQLFGSLSSFIFNMSSMTTIDLSINRLSGELPANICKIPSTLSKCKQLEELNLGF 164
           L  S NQ+  S  S + +++ +  + ++ NRL      N+  I         L  L L  
Sbjct: 68  LHLSHNQI--SDLSPLKDLTKLEELSVNRNRLK-----NLNGI-----PSACLSRLFLDN 115

Query: 165 NNLSGAIPKEIGNLTKLKEI------ISTITNSTVCEIPREIGNLPYLARLALATNNLVG 218
           N L       + +L  L+ +      + +I           +G L  L  L L  N +  
Sbjct: 116 NELRDTDS--LIHLKNLEILSIRNNKLKSIVM---------LGFLSKLEVLDLHGNEITN 164

Query: 219 VVPVTIFNMSALKEISLLNNSLS-GSLPSRIDLSLPNVETLNLGINSFSGTIPSSITNSS 277
              +T   +  +  I L         +  + +L + N     +         P  I+N  
Sbjct: 165 TGGLT--RLKKVNWIDLTGQKCVNEPVKYQPELYITN----TVKDPDGRWISPYYISNGG 218

Query: 278 KLSDLELGENL 288
              D  +   L
Sbjct: 219 SYVDGCVLWEL 229

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 58.1 bits (141), Expect = 2e-09
 Identities = 45/214 (21%), Positives = 83/214 (38%), Gaps = 33/214 (15%)

Query: 272 SITNSSKLSDLELGENLFSGFIPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKK 331
           SI   + ++ +                 L N    N+    +T        L S      
Sbjct: 2   SIQRPTPINQVF------------PDPGLANAVKQNLGKQSVTD-------LVSQKELSG 42

Query: 332 LKVLIVTGNPLDGILPKSIGNFSLSLETILMANCSISGNIPQVVGNLSNLLVLELGGNNL 391
           ++      + +  +    +  F+ +L+ + +++  IS ++  +  +L+ L  L +  N L
Sbjct: 43  VQNFNGDNSNIQSL--AGMQFFT-NLKELHLSHNQIS-DLSPL-KDLTKLEELSVNRNRL 97

Query: 392 TGPIPVTFSQLQTLQAFDLTRNKLAGPITDELCHLARLHSLVLQGNKFSGSIPSCLGNLT 451
                +  + L  L    L  N+L    TD L HL  L  L ++ NK   SI   LG L+
Sbjct: 98  KNLNGIPSACLSRL---FLDNNELRD--TDSLIHLKNLEILSIRNNKLK-SI-VMLGFLS 150

Query: 452 SVRVLYLGLNIFTSVLSSTIWNLKDILFIDVSSN 485
            + VL L  N  T+     +  LK + +ID++  
Sbjct: 151 KLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQ 182

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 53.9 bits (130), Expect = 5e-08
 Identities = 34/199 (17%), Positives = 72/199 (36%), Gaps = 23/199 (11%)

Query: 72  LGNLSSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQLFGSLSSFIFNMSSMTTIDL 131
           L +L+ L+ L ++ N+L  N+  +      L  L   +N+L    +  + ++ ++  + +
Sbjct: 81  LKDLTKLEELSVNRNRLK-NL--NGIPSACLSRLFLDNNEL--RDTDSLIHLKNLEILSI 135

Query: 132 SINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEIGNLTKLKEIISTITNS 191
             N+L      +I      L    +LE L+L  N ++      +  L K+  I   +T  
Sbjct: 136 RNNKLK-----SI----VMLGFLSKLEVLDLHGNEITNTGG--LTRLKKVNWI--DLTGQ 182

Query: 192 TVCEIPREIGNLPYLARLALATN-NLVGVVPVTIFNMSALKEISLLNNSLSGSLPSRIDL 250
                P  +   P L       + +   + P  I N  +  +  +L      +    +  
Sbjct: 183 KCVNEP--VKYQPELYITNTVKDPDGRWISPYYISNGGSYVDGCVLWELPVYT--DEVSY 238

Query: 251 SLPNVETLNLGINSFSGTI 269
                  +      F GT+
Sbjct: 239 KFSEYINVGETEAIFDGTV 257

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C Length = 400

 Score = 64.4 bits (157), Expect = 5e-11
 Identities = 30/95 (31%), Positives = 47/95 (49%), Gaps = 9/95 (9%)

Query: 673 RNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLL---DEDMVAHISDFGIAKLLSGEDQL 729
             ++K I  +++YLH   SI I H D+KP N+L      + +  ++DFG AK  +  + L
Sbjct: 164 SEIMKSIGEAIQYLH---SINIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTSHNSL 220

Query: 730 SKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
              T    T  Y+APE     +     D+ S G+I
Sbjct: 221 ---TTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVI 252

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ... Length = 334

 Score = 63.8 bits (156), Expect = 5e-11
 Identities = 33/108 (30%), Positives = 55/108 (50%), Gaps = 6/108 (5%)

Query: 659 SFEDECEVRKRIRHRNLVKI---ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHIS 715
           S++      +++  ++LV     ++  +EYL    S   IH DL   NVL+ E+ V  I+
Sbjct: 143 SYDINRVPEEQMTFKDLVSCTYQLARGMEYLA---SQKCIHRDLAARNVLVTENNVMKIA 199

Query: 716 DFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGI 763
           DFG+A+ ++  D   K T     + +MAPE       + + DV SFG+
Sbjct: 200 DFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGV 247

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A* Length = 267

 Score = 63.0 bits (154), Expect = 6e-11
 Identities = 38/171 (22%), Positives = 65/171 (38%), Gaps = 55/171 (32%)

Query: 640 NGMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVKI--------------------- 678
           N  +VA+K   +    + + F +E EV  ++ H  LV++                     
Sbjct: 31  NKDKVAIKTIREGAM-SEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVTEFMEHGC 89

Query: 679 -----------------------ISSSLEYL---HFGHSIPIIHCDLKPSNVLLDEDMVA 712
                                  +   + YL           IH DL   N L+ E+ V 
Sbjct: 90  LSDYLRTQRGLFAAETLLGMCLDVCEGMAYLEEACV------IHRDLAARNCLVGENQVI 143

Query: 713 HISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGI 763
            +SDFG+ + +  +DQ +  T T   + + +PE  +  R S++ DV SFG+
Sbjct: 144 KVSDFGMTRFVL-DDQYTSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGV 193

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ... Length = 316

 Score = 63.4 bits (155), Expect = 6e-11
 Identities = 28/108 (25%), Positives = 48/108 (44%), Gaps = 6/108 (5%)

Query: 659 SFEDECEVRKRIRHRNLVKI---ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHIS 715
               E   +  +   +L+     ++  +E+L    S   IH DL   N+LL E  V  I 
Sbjct: 134 KVAPEDLYKDFLTLEHLICYSFQVAKGMEFLA---SRKCIHRDLAARNILLSEKNVVKIC 190

Query: 716 DFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGI 763
           DFG+A+ +  +    ++      + +MAPE       + + DV SFG+
Sbjct: 191 DFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGV 238

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei} Length = 504

 Score = 64.7 bits (158), Expect = 6e-11
 Identities = 33/95 (34%), Positives = 51/95 (53%), Gaps = 10/95 (10%)

Query: 673 RNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLL---DEDMVAHISDFGIAKLLSGEDQL 729
            N++K I S + YLH  +   I+H D+KP N+LL   +  +   I DFG++   S + +L
Sbjct: 149 ANIMKQILSGICYLHKHN---IVHRDIKPENILLENKNSLLNIKIVDFGLSSFFSKDYKL 205

Query: 730 SKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
                 L T  Y+APE   K + + + DV S G+I
Sbjct: 206 ---RDRLGTAYYIAPEV-LKKKYNEKCDVWSCGVI 236

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A* Length = 284

 Score = 63.0 bits (154), Expect = 6e-11
 Identities = 27/101 (26%), Positives = 46/101 (45%), Gaps = 21/101 (20%)

Query: 673 RNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLL---DEDMVAHISDFGIAKLLSGEDQL 729
            + ++ I  S+ Y H   S  I+H +LKP N+LL    +     ++DFG+A  ++  +  
Sbjct: 108 SHCIQQILESIAYCH---SNGIVHRNLKPENLLLASKAKGAAVKLADFGLAIEVNDSEAW 164

Query: 730 SKQTQTLATIGYMAPE------YGTKGRVSTRGDVCSFGII 764
                   T GY++PE      Y     V    D+ + G+I
Sbjct: 165 ---HGFAGTPGYLSPEVLKKDPYSKP--V----DIWACGVI 196

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A* Length = 486

 Score = 64.3 bits (157), Expect = 7e-11
 Identities = 30/100 (30%), Positives = 47/100 (47%), Gaps = 20/100 (20%)

Query: 673 RNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLL---DEDMVAHISDFGIAKLLSGEDQL 729
             ++K + S + Y+H  +   I+H DLKP N+LL   ++D    I DFG++       ++
Sbjct: 124 ARIIKQVFSGITYMHKHN---IVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQQNTKM 180

Query: 730 SKQTQTLATIGYMAPE-----YGTKGRVSTRGDVCSFGII 764
                 + T  Y+APE     Y  K       DV S G+I
Sbjct: 181 ---KDRIGTAYYIAPEVLRGTYDEK------CDVWSAGVI 211

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A* Length = 287

 Score = 63.0 bits (154), Expect = 7e-11
 Identities = 40/178 (22%), Positives = 63/178 (35%), Gaps = 65/178 (36%)

Query: 640 NGMEVAVKVFH--QQYERALKSFEDECEVRKRIRHRNLVKI------------------- 678
              E AVKV +      +   +   E E+ K++ H N++K+                   
Sbjct: 46  TQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILEDSSSFYIVGELYTG 105

Query: 679 ------------------------ISSSLEYLHFGHSIPIIHCDLKPSNVLL---DEDMV 711
                                   + S + Y+   H   I+H DLKP N+LL   ++D  
Sbjct: 106 GELFDEIIKRKRFSEHDAARIIKQVFSGITYM---HKHNIVHRDLKPENILLESKEKDCD 162

Query: 712 AHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPE-----YGTKGRVSTRGDVCSFGII 764
             I DFG++       ++      + T  Y+APE     Y  K       DV S G+I
Sbjct: 163 IKIIDFGLSTCFQQNTKM---KDRIGTAYYIAPEVLRGTYDEK------CDVWSAGVI 211

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens} Length = 337

 Score = 63.2 bits (154), Expect = 8e-11
 Identities = 27/100 (27%), Positives = 39/100 (39%), Gaps = 16/100 (16%)

Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLA- 737
              +++++H     PIIH DLK  N+LL       + DFG A  +S     S   Q  A 
Sbjct: 145 TCRAVQHMH-RQKPPIIHRDLKVENLLLSNQGTIKLCDFGSATTISHYPDYSWSAQRRAL 203

Query: 738 ---------TIGYMAPE----YGTKGRVSTRGDVCSFGII 764
                    T  Y  PE    Y     +  + D+ + G I
Sbjct: 204 VEEEITRNTTPMYRTPEIIDLYS-NFPIGEKQDIWALGCI 242

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A* Length = 335

 Score = 63.1 bits (154), Expect = 9e-11
 Identities = 35/105 (33%), Positives = 48/105 (45%), Gaps = 15/105 (14%)

Query: 662 DECEVRKRIRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAK 721
            E E R  +R       I    +YLH      +IH DLK  N+ L+ED+   I DFG+A 
Sbjct: 139 TEPEARYYLRQ------IVLGCQYLH---RNRVIHRDLKLGNLFLNEDLEVKIGDFGLAT 189

Query: 722 LLSGEDQLSKQTQ--TLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
            +  + +  K+    T     Y+APE  +K   S   DV S G I
Sbjct: 190 KVEYDGER-KKVLCGTPN---YIAPEVLSKKGHSFEVDVWSIGCI 230

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens} Length = 373

 Score = 63.2 bits (154), Expect = 1e-10
 Identities = 37/168 (22%), Positives = 63/168 (37%), Gaps = 48/168 (28%)

Query: 641 GMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVK----------------------- 677
           G+++A K+   +  +  +  ++E  V  ++ H NL++                       
Sbjct: 114 GLKLAAKIIKTRGMKDKEEVKNEISVMNQLDHANLIQLYDAFESKNDIVLVMEYVDGGEL 173

Query: 678 ---IISSSLEY---------------LHFGHSIPIIHCDLKPSNVLL---DEDMVAHISD 716
              II  S                  +   H + I+H DLKP N+L    D   +  I D
Sbjct: 174 FDRIIDESYNLTELDTILFMKQICEGIRHMHQMYILHLDLKPENILCVNRDAKQIK-IID 232

Query: 717 FGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
           FG+A+     ++L        T  ++APE      VS   D+ S G+I
Sbjct: 233 FGLARRYKPREKL---KVNFGTPEFLAPEVVNYDFVSFPTDMWSVGVI 277

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A* Length = 314

 Score = 62.6 bits (153), Expect = 1e-10
 Identities = 29/100 (29%), Positives = 51/100 (51%), Gaps = 6/100 (6%)

Query: 667 RKRIRHRNLVKI---ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLL 723
            + +   +L+     IS  ++YL     + ++H DL   N+L+ E     ISDFG+++ +
Sbjct: 144 ERALTMGDLISFAWQISQGMQYLA---EMKLVHRDLAARNILVAEGRKMKISDFGLSRDV 200

Query: 724 SGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGI 763
             ED   K++Q    + +MA E       +T+ DV SFG+
Sbjct: 201 YEEDSYVKRSQGRIPVKWMAIESLFDHIYTTQSDVWSFGV 240

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A Length = 342

 Score = 62.7 bits (153), Expect = 1e-10
 Identities = 31/103 (30%), Positives = 46/103 (44%), Gaps = 23/103 (22%)

Query: 673 RNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLL----DEDMVAHISDFGIAKLLSGEDQ 728
             ++  I+ ++EYLH   +  ++H DLKPSN+L            I DFG AK L  E+ 
Sbjct: 119 SAVLFTITKTVEYLH---AQGVVHRDLKPSNILYVDESGNPESIRICDFGFAKQLRAENG 175

Query: 729 LSKQTQTLA-TIGYMAPE------YGTKGRVSTRGDVCSFGII 764
           L     T   T  ++APE      Y          D+ S G++
Sbjct: 176 L---LMTPCYTANFVAPEVLERQGYDAA--C----DIWSLGVL 209

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A* Length = 281

 Score = 61.8 bits (151), Expect = 1e-10
 Identities = 36/166 (21%), Positives = 60/166 (36%), Gaps = 42/166 (25%)

Query: 639 GNGMEVAVKVFHQQY-ERALKSFEDECEVRKRIRHRNLVK---IISSS------------ 682
           G  + VAVK   +       + F  E  + K + H ++VK   II               
Sbjct: 38  GEKINVAVKTCKKDCTLDNKEKFMSEAVIMKNLDHPHIVKLIGIIEEEPTWIIMELYPYG 97

Query: 683 --LEYL-HFGHSIPI----------------------IHCDLKPSNVLLDEDMVAHISDF 717
               YL    +S+ +                      +H D+   N+L+       + DF
Sbjct: 98  ELGHYLERNKNSLKVLTLVLYSLQICKAMAYLESINCVHRDIAVRNILVASPECVKLGDF 157

Query: 718 GIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGI 763
           G+++ +  ED   K + T   I +M+PE     R +T  DV  F +
Sbjct: 158 GLSRYIEDEDY-YKASVTRLPIKWMSPESINFRRFTTASDVWMFAV 202

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} PDB: 3sxr_A* Length = 268

 Score = 61.8 bits (151), Expect = 1e-10
 Identities = 38/175 (21%), Positives = 61/175 (34%), Gaps = 56/175 (32%)

Query: 637 GIGNG-MEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVKI----------------- 678
           G   G  +VAVK+  +    +   F  E +   ++ H  LVK                  
Sbjct: 27  GKWKGQYDVAVKMIKEGSM-SEDEFFQEAQTMMKLSHPKLVKFYGVCSKEYPIYIVTEYI 85

Query: 679 ---------------------------ISSSLEYL---HFGHSIPIIHCDLKPSNVLLDE 708
                                      +   + +L    F      IH DL   N L+D 
Sbjct: 86  SNGCLLNYLRSHGKGLEPSQLLEMCYDVCEGMAFLESHQF------IHRDLAARNCLVDR 139

Query: 709 DMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGI 763
           D+   +SDFG+ + +  +DQ      T   + + APE     + S++ DV +FGI
Sbjct: 140 DLCVKVSDFGMTRYVL-DDQYVSSVGTKFPVKWSAPEVFHYFKYSSKSDVWAFGI 193

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A Length = 316

 Score = 62.3 bits (152), Expect = 2e-10
 Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 11/81 (13%)

Query: 673 RNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLL---DEDMVAHISDFGIAKLLS-GEDQ 728
             +V+ ++S+L++LH   +  I H DLKP N+L    ++     I DF +   +    D 
Sbjct: 114 SVVVQDVASALDFLH---NKGIAHRDLKPENILCEHPNQVSPVKICDFDLGSGIKLNGDC 170

Query: 729 LSKQTQTLATI----GYMAPE 745
               T  L T      YMAPE
Sbjct: 171 SPISTPELLTPCGSAEYMAPE 191

>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ... Length = 371

 Score = 62.8 bits (153), Expect = 2e-10
 Identities = 31/104 (29%), Positives = 43/104 (41%), Gaps = 16/104 (15%)

Query: 674 NLVKIISSSLEYLH-------------FGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIA 720
           NL ++I   L++                 HS  IIH DLKPSN+++  D    I DFG+A
Sbjct: 115 NLCQVIQMELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLA 174

Query: 721 KLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
           +       +   T  + T  Y APE           D+ S G I
Sbjct: 175 RTAGTSFMM---TPYVVTRYYRAPEVILGMGYKENVDIWSVGCI 215

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus} Length = 323

 Score = 62.3 bits (152), Expect = 2e-10
 Identities = 29/116 (25%), Positives = 51/116 (43%), Gaps = 15/116 (12%)

Query: 657 LKSF---EDECEVRKRIRHRNLVKI---ISSSLEYL---HFGHSIPIIHCDLKPSNVLLD 707
           L +F       E    +  + LV+    I+  +EYL   +F      IH DL   N +L 
Sbjct: 118 LHAFLLASRIGENPFNLPLQTLVRFMVDIACGMEYLSSRNF------IHRDLAARNCMLA 171

Query: 708 EDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGI 763
           EDM   ++DFG+++ +   D   +   +   + ++A E       +   DV +FG+
Sbjct: 172 EDMTVCVADFGLSRKIYSGDYYRQGCASKLPVKWLALESLADNLYTVHSDVWAFGV 227

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A* Length = 327

 Score = 62.3 bits (152), Expect = 2e-10
 Identities = 37/188 (19%), Positives = 63/188 (33%), Gaps = 63/188 (33%)

Query: 633 NNLIGIGNGMEVAVKVFHQQY-ERALKSFEDECEVRKRIRHRNLVKI------------- 678
           + +    + ++VAVK   +   E+    F  E  +  +  H+N+V+              
Sbjct: 52  SGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQSLPRFIL 111

Query: 679 -------------------------------------ISSSLEYL---HFGHSIPIIHCD 698
                                                I+   +YL   HF      IH D
Sbjct: 112 MELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEENHF------IHRD 165

Query: 699 LKPSNVLLD---EDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTR 755
           +   N LL       VA I DFG+A+ +       K    +  + +M PE   +G  +++
Sbjct: 166 IAARNCLLTCPGPGRVAKIGDFGMARDIYRASYYRKGGCAMLPVKWMPPEAFMEGIFTSK 225

Query: 756 GDVCSFGI 763
            D  SFG+
Sbjct: 226 TDTWSFGV 233

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A* Length = 336

 Score = 62.4 bits (152), Expect = 2e-10
 Identities = 29/96 (30%), Positives = 48/96 (50%), Gaps = 12/96 (12%)

Query: 673 RNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLL---DEDMVAHISDFGIAKLLSGEDQL 729
             +++ I +++++LH   S  I H D+KP N+L    ++D V  ++DFG AK  +     
Sbjct: 131 AEIMRDIGTAIQFLH---SHNIAHRDVKPENLLYTSKEKDAVLKLTDFGFAKETTQN--- 184

Query: 730 SKQTQTLA-TIGYMAPEYGTKGRVSTRGDVCSFGII 764
               QT   T  Y+APE     +     D+ S G+I
Sbjct: 185 --ALQTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVI 218

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A Length = 283

 Score = 61.5 bits (150), Expect = 2e-10
 Identities = 30/171 (17%), Positives = 64/171 (37%), Gaps = 55/171 (32%)

Query: 640 NGMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVKI--------------------- 678
              +VA+K+  +    +   F +E +V   + H  LV++                     
Sbjct: 47  GQYDVAIKMIKEGSM-SEDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFIITEYMANGC 105

Query: 679 -----------------------ISSSLEYL---HFGHSIPIIHCDLKPSNVLLDEDMVA 712
                                  +  ++EYL    F      +H DL   N L+++  V 
Sbjct: 106 LLNYLREMRHRFQTQQLLEMCKDVCEAMEYLESKQF------LHRDLAARNCLVNDQGVV 159

Query: 713 HISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGI 763
            +SDFG+++ +  +D+ +    +   + +  PE     + S++ D+ +FG+
Sbjct: 160 KVSDFGLSRYVL-DDEYTSSVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGV 209

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens} Length = 367

 Score = 62.0 bits (151), Expect = 3e-10
 Identities = 37/188 (19%), Positives = 63/188 (33%), Gaps = 63/188 (33%)

Query: 633 NNLIGIGNGMEVAVKVFHQQY-ERALKSFEDECEVRKRIRHRNLVKI------------- 678
           + +    + ++VAVK   +   E+    F  E  +  +  H+N+V+              
Sbjct: 93  SGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQSLPRFIL 152

Query: 679 -------------------------------------ISSSLEYL---HFGHSIPIIHCD 698
                                                I+   +YL   HF      IH D
Sbjct: 153 LELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEENHF------IHRD 206

Query: 699 LKPSNVLLD---EDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTR 755
           +   N LL       VA I DFG+A+ +       K    +  + +M PE   +G  +++
Sbjct: 207 IAARNCLLTCPGPGRVAKIGDFGMARDIYRAGYYRKGGCAMLPVKWMPPEAFMEGIFTSK 266

Query: 756 GDVCSFGI 763
            D  SFG+
Sbjct: 267 TDTWSFGV 274

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens} Length = 305

 Score = 61.5 bits (150), Expect = 3e-10
 Identities = 37/195 (18%), Positives = 66/195 (33%), Gaps = 69/195 (35%)

Query: 635 LIGIGN------------GMEVAVKVFHQQYERALKSFED----ECEVRKRIRHRNLVK- 677
           L+G G+                AVK+  ++  R + + E     E ++ +R+RH+N+++ 
Sbjct: 12  LLGEGSYGKVKEVLDSETLCRRAVKILKKKKLRRIPNGEANVKKEIQLLRRLRHKNVIQL 71

Query: 678 --IISSS--------LEY--------------------------------LHFGHSIPII 695
             ++ +         +EY                                L + HS  I+
Sbjct: 72  VDVLYNEEKQKMYMVMEYCVCGMQEMLDSVPEKRFPVCQAHGYFCQLIDGLEYLHSQGIV 131

Query: 696 HCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATI----GYMAPE--YGTK 749
           H D+KP N+LL       IS  G    ++          T  T      +  PE   G  
Sbjct: 132 HKDIKPGNLLLTTGGTLKISALG----VAEALHPFAADDTCRTSQGSPAFQPPEIANGLD 187

Query: 750 GRVSTRGDVCSFGII 764
                + D+ S G+ 
Sbjct: 188 TFSGFKVDIWSAGVT 202

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7 Length = 333

 Score = 61.6 bits (150), Expect = 3e-10
 Identities = 34/171 (19%), Positives = 68/171 (39%), Gaps = 55/171 (32%)

Query: 642 MEVAVKVFHQQY-ERALKSFEDECEVRKRIRHRNLVKI---------------------- 678
           + VA+K     Y E+    F  E  +  +  H N++++                      
Sbjct: 74  VPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNIIRLEGVISKYKPMMIITEYMENGAL 133

Query: 679 ----------------------ISSSLEYL---HFGHSIPIIHCDLKPSNVLLDEDMVAH 713
                                 I++ ++YL   ++      +H DL   N+L++ ++V  
Sbjct: 134 DKFLREKDGEFSVLQLVGMLRGIAAGMKYLANMNY------VHRDLAARNILVNSNLVCK 187

Query: 714 ISDFGIAKLLSGEDQLSKQTQ-TLATIGYMAPEYGTKGRVSTRGDVCSFGI 763
           +SDFG++++L  + + +  T      I + APE  +  + ++  DV SFGI
Sbjct: 188 VSDFGLSRVLEDDPEATYTTSGGKIPIRWTAPEAISYRKFTSASDVWSFGI 238

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A Length = 419

 Score = 61.6 bits (150), Expect = 4e-10
 Identities = 42/181 (23%), Positives = 66/181 (36%), Gaps = 64/181 (35%)

Query: 641 GMEVAVKVFH--------QQYERALKSFEDECEVRKRIRHRNLVKI-------------- 678
             +VA+++           +      + E E E+ K++ H  ++KI              
Sbjct: 160 CKKVAIRIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFDAEDYYIVLE 219

Query: 679 ----------------------------ISSSLEYLHFGHSIPIIHCDLKPSNVLL---D 707
                                       +  +++YLH      IIH DLKP NVLL   +
Sbjct: 220 LMEGGELFDKVVGNKRLKEATCKLYFYQMLLAVQYLH---ENGIIHRDLKPENVLLSSQE 276

Query: 708 EDMVAHISDFGIAKLLSGEDQLSKQTQTLA-TIGYMAPE---YGTKGRVSTRGDVCSFGI 763
           ED +  I+DFG +K+L     +     TL  T  Y+APE          +   D  S G+
Sbjct: 277 EDCLIKITDFGHSKILGETSLMR----TLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGV 332

Query: 764 I 764
           I
Sbjct: 333 I 333

>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7 Length = 318

 Score = 61.0 bits (149), Expect = 4e-10
 Identities = 31/70 (44%), Positives = 40/70 (57%), Gaps = 14/70 (20%)

Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHI--SDFGIAKLLSGEDQLSKQTQTL 736
           +  +LEYLH   S  II+ DLKP N+LLD++   HI  +DFG AK       +   T TL
Sbjct: 115 VCLALEYLH---SKDIIYRDLKPENILLDKN--GHIKITDFGFAK------YVPDVTYTL 163

Query: 737 -ATIGYMAPE 745
             T  Y+APE
Sbjct: 164 CGTPDYIAPE 173

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens} Length = 314

 Score = 60.8 bits (148), Expect = 4e-10
 Identities = 41/190 (21%), Positives = 71/190 (37%), Gaps = 57/190 (30%)

Query: 627 TDRFSENNLIGIG------------NGMEVAVKVFHQQYERALKSFEDECEVRKRIRHRN 674
            + F     +G G             G  VA+K      E  L+    E  + ++    +
Sbjct: 28  EEVFDVLEKLGEGSYGSVYKAIHKETGQIVAIKQV--PVESDLQEIIKEISIMQQCDSPH 85

Query: 675 LVK-----------------------------------------IISSSLEYLHFGHSIP 693
           +VK                                         I+ S+L+ L + H + 
Sbjct: 86  VVKYYGSYFKNTDLWIVMEYCGAGSVSDIIRLRNKTLTEDEIATILQSTLKGLEYLHFMR 145

Query: 694 IIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVS 753
            IH D+K  N+LL+ +  A ++DFG+A  L+  D ++K+   + T  +MAPE   +   +
Sbjct: 146 KIHRDIKAGNILLNTEGHAKLADFGVAGQLT--DTMAKRNTVIGTPFWMAPEVIQEIGYN 203

Query: 754 TRGDVCSFGI 763
              D+ S GI
Sbjct: 204 CVADIWSLGI 213

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii} Length = 285

 Score = 60.7 bits (148), Expect = 4e-10
 Identities = 31/95 (32%), Positives = 47/95 (49%), Gaps = 10/95 (10%)

Query: 673 RNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLL---DEDMVAHISDFGIAKLLSGEDQL 729
             L+K + ++L Y H   S  ++H DLKP N+L           I DFG+A+L   ++  
Sbjct: 127 AELMKQMMNALAYFH---SQHVVHKDLKPENILFQDTSPHSPIKIIDFGLAELFKSDEHS 183

Query: 730 SKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
              T    T  YMAPE   K  V+ + D+ S G++
Sbjct: 184 ---TNAAGTALYMAPEV-FKRDVTFKCDIWSAGVV 214

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A* Length = 327

 Score = 60.7 bits (148), Expect = 5e-10
 Identities = 30/95 (31%), Positives = 47/95 (49%), Gaps = 9/95 (9%)

Query: 673 RNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLL---DEDMVAHISDFGIAKLLSGEDQL 729
             L+K I   + YLH  +   I+H DLKP N+LL          I DFG+++ +    +L
Sbjct: 134 IRLIKQILEGVYYLHQNN---IVHLDLKPQNILLSSIYPLGDIKIVDFGMSRKIGHACEL 190

Query: 730 SKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
               + + T  Y+APE      ++T  D+ + GII
Sbjct: 191 ---REIMGTPEYLAPEILNYDPITTATDMWNIGII 222

>3zzw_A Tyrosine-protein kinase transmembrane receptor RO; transferase, neurotrophic tyrosine kinase, receptor-related NTRKR2; 2.90A {Homo sapiens} Length = 289

 Score = 59.9 bits (146), Expect = 6e-10
 Identities = 31/111 (27%), Positives = 53/111 (47%), Gaps = 12/111 (10%)

Query: 659 SFEDECEVRKRIRHRNLVKI---ISSSLEYL---HFGHSIPIIHCDLKPSNVLLDEDMVA 712
           S +D+  V+  +   + V +   I++ +EYL   H       +H DL   NVL+ + +  
Sbjct: 114 STDDDRTVKSALEPPDFVHLVAQIAAGMEYLSSHHV------VHKDLATRNVLVYDKLNV 167

Query: 713 HISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGI 763
            ISD G+ + +   D       +L  I +MAPE    G+ S   D+ S+G+
Sbjct: 168 KISDLGLFREVYAADYYKLLGNSLLPIRWMAPEAIMYGKFSIDSDIWSYGV 218

>3g51_A Ribosomal protein S6 kinase alpha-3; N-terminal kinase domain of P90 ribosomal S6 kinase 2, ATP- binding, nucleotide-binding, phosphoprotein; HET: ANP; 1.80A {Mus musculus} PDB: 2z7q_A* 2z7r_A* 2z7s_A* Length = 325

 Score = 60.3 bits (147), Expect = 7e-10
 Identities = 28/70 (40%), Positives = 44/70 (62%), Gaps = 11/70 (15%)

Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHI--SDFGIAKLLSGEDQLSKQTQTL 736
           ++ +L++LH   S+ II+ DLKP N+LLDE+   HI  +DFG++K     +   K+  + 
Sbjct: 135 LALALDHLH---SLGIIYRDLKPENILLDEE--GHIKLTDFGLSKESIDHE---KKAYSF 186

Query: 737 -ATIGYMAPE 745
             T+ YMAPE
Sbjct: 187 CGTVEYMAPE 196

>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7 Length = 355

 Score = 60.8 bits (148), Expect = 7e-10
 Identities = 24/70 (34%), Positives = 41/70 (58%), Gaps = 10/70 (14%)

Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHI--SDFGIAKLLSGEDQLSKQTQTL 736
           I  +LE+LH    + II+ D+K  N+LLD +   H+  +DFG++K    ++  +++    
Sbjct: 168 IVLALEHLH---KLGIIYRDIKLENILLDSN--GHVVLTDFGLSKEFVADE--TERAYDF 220

Query: 737 A-TIGYMAPE 745
             TI YMAP+
Sbjct: 221 CGTIEYMAPD 230

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A* Length = 446

 Score = 61.3 bits (149), Expect = 7e-10
 Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 6/68 (8%)

Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTL-A 737
           I S+L+YLH   ++  ++ DLK  N++LD+D    I+DFG+ K    +       +T   
Sbjct: 257 IVSALDYLHSEKNV--VYRDLKLENLMLDKDGHIKITDFGLCKEGIKDG---ATMKTFCG 311

Query: 738 TIGYMAPE 745
           T  Y+APE
Sbjct: 312 TPEYLAPE 319

>3v5q_A NT-3 growth factor receptor; kinase domain, kinase, phosphorylation, transferase-transfer inhibitor complex; HET: 0F4; 2.20A {Homo sapiens} Length = 297

 Score = 59.9 bits (146), Expect = 7e-10
 Identities = 28/111 (25%), Positives = 49/111 (44%), Gaps = 12/111 (10%)

Query: 659 SFEDECEVRKRIRHRNLVKI---ISSSLEYL---HFGHSIPIIHCDLKPSNVLLDEDMVA 712
                 + +  +    ++ I   I+S + YL   HF      +H DL   N L+  +++ 
Sbjct: 119 VDGQPRQAKGELGLSQMLHIASQIASGMVYLASQHF------VHRDLATRNCLVGANLLV 172

Query: 713 HISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGI 763
            I DFG+++ +   D       T+  I +M PE     + +T  DV SFG+
Sbjct: 173 KIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSFGV 223

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens} Length = 329

 Score = 60.4 bits (147), Expect = 8e-10
 Identities = 29/115 (25%), Positives = 50/115 (43%), Gaps = 12/115 (10%)

Query: 655 RALKSFEDECEVRKRIRHRNLVKI---ISSSLEYL---HFGHSIPIIHCDLKPSNVLLDE 708
            A      E      +    L+ +   +++ + YL   HF      +H DL   N L+ +
Sbjct: 140 DAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLAGLHF------VHRDLATRNCLVGQ 193

Query: 709 DMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGI 763
            +V  I DFG+++ +   D      +T+  I +M PE     + +T  DV SFG+
Sbjct: 194 GLVVKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDVWSFGV 248

>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A* Length = 327

 Score = 59.9 bits (146), Expect = 1e-09
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 11/70 (15%)

Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHI--SDFGIAKLLSGEDQLSKQTQTL 736
           IS +L +LH      II+ DLKP N++L+     H+  +DFG+ K    +      T T 
Sbjct: 130 ISMALGHLH---QKGIIYRDLKPENIMLNHQ--GHVKLTDFGLCKESIHDGT---VTHTF 181

Query: 737 A-TIGYMAPE 745
             TI YMAPE
Sbjct: 182 CGTIEYMAPE 191

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ... Length = 276

 Score = 59.1 bits (144), Expect = 1e-09
 Identities = 43/184 (23%), Positives = 67/184 (36%), Gaps = 54/184 (29%)

Query: 635 LIGIGN------------GMEVAVKVFH-QQYERALKSFEDECEVRKRIRHRNLVK---I 678
            +G G                VAVK+   ++     ++ + E  + K + H N+VK    
Sbjct: 14  TLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGH 73

Query: 679 ISSS------LEY-------------------------------LHFGHSIPIIHCDLKP 701
                     LEY                               + + H I I H D+KP
Sbjct: 74  RREGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFFHQLMAGVVYLHGIGITHRDIKP 133

Query: 702 SNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPE-YGTKGRVSTRGDVCS 760
            N+LLDE     ISDFG+A +    ++     +   T+ Y+APE    +   +   DV S
Sbjct: 134 ENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWS 193

Query: 761 FGII 764
            GI+
Sbjct: 194 CGIV 197

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7 Length = 343

 Score = 59.6 bits (145), Expect = 1e-09
 Identities = 26/118 (22%), Positives = 46/118 (38%), Gaps = 12/118 (10%)

Query: 652 QYERALKSFEDECEVRKRIRHRNLVKI---ISSSLEYL---HFGHSIPIIHCDLKPSNVL 705
            +                +     + I   +++ + YL    F      +H DL   N L
Sbjct: 153 SHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSERKF------VHRDLATRNCL 206

Query: 706 LDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGI 763
           + E+MV  I+DFG+++ +   D           I +M PE     R +T  DV ++G+
Sbjct: 207 VGENMVVKIADFGLSRNIYSADYYKADGNDAIPIRWMPPESIFYNRYTTESDVWAYGV 264

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ... Length = 283

 Score = 58.7 bits (143), Expect = 2e-09
 Identities = 26/96 (27%), Positives = 40/96 (41%), Gaps = 10/96 (10%)

Query: 673 RNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLL----DEDMVAHISDFGIAKLLSGEDQ 728
              +K I   + YLH      I H DLKP N++L      +    + DFGIA  +   ++
Sbjct: 111 TQFLKQILDGVHYLHSKR---IAHFDLKPENIMLLDKNVPNPRIKLIDFGIAHKIEAGNE 167

Query: 729 LSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
                    T  ++APE      +    D+ S G+I
Sbjct: 168 F---KNIFGTPEFVAPEIVNYEPLGLEADMWSIGVI 200

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A* Length = 437

 Score = 59.8 bits (145), Expect = 2e-09
 Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 10/70 (14%)

Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHI--SDFGIAKLLSGEDQLSKQTQTL 736
           +  +++ +H    +  +H D+KP N+L+D +   HI  +DFG    L  +   + Q+   
Sbjct: 184 MVIAIDSVH---QLHYVHRDIKPDNILMDMN--GHIRLADFGSCLKLMEDG--TVQSSVA 236

Query: 737 -ATIGYMAPE 745
             T  Y++PE
Sbjct: 237 VGTPDYISPE 246

>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ... Length = 337

 Score = 59.2 bits (144), Expect = 2e-09
 Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 11/70 (15%)

Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHI--SDFGIAKLLSGEDQLSKQTQTL 736
           I S+LEYLH   S  +++ D+K  N++LD+D   HI  +DFG+ K    +       +T 
Sbjct: 114 IVSALEYLH---SRDVVYRDIKLENLMLDKD--GHIKITDFGLCKEGISDG---ATMKTF 165

Query: 737 -ATIGYMAPE 745
             T  Y+APE
Sbjct: 166 CGTPEYLAPE 175

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A* Length = 303

 Score = 58.9 bits (143), Expect = 2e-09
 Identities = 30/81 (37%), Positives = 44/81 (54%), Gaps = 5/81 (6%)

Query: 683 LEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYM 742
           L+YLH   S   IH D+K +NVLL E     ++DFG+A  L+  D   K+   + T  +M
Sbjct: 132 LDYLH---SEKKIHRDIKAANVLLSEHGEVKLADFGVAGQLT--DTQIKRNTFVGTPFWM 186

Query: 743 APEYGTKGRVSTRGDVCSFGI 763
           APE   +    ++ D+ S GI
Sbjct: 187 APEVIKQSAYDSKADIWSLGI 207

>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ... Length = 350

 Score = 59.2 bits (144), Expect = 2e-09
 Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 14/70 (20%)

Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHI--SDFGIAKLLSGEDQLSKQTQTL 736
           I  + EYLH   S+ +I+ DLKP N+L+D+    +I  +DFG AK      ++  +T TL
Sbjct: 150 IVLTFEYLH---SLDLIYRDLKPENLLIDQQ--GYIQVTDFGFAK------RVKGRTWTL 198

Query: 737 -ATIGYMAPE 745
             T   +APE
Sbjct: 199 CGTPEALAPE 208

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7 Length = 321

 Score = 58.8 bits (143), Expect = 2e-09
 Identities = 25/94 (26%), Positives = 39/94 (41%), Gaps = 8/94 (8%)

Query: 673 RNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLL--DEDMVAHISDFGIAKLLSGEDQLS 730
            + V  +  +L++LH  +   I H D++P N++          I +FG A+ L   D   
Sbjct: 105 VSYVHQVCEALQFLHSHN---IGHFDIRPENIIYQTRRSSTIKIIEFGQARQLKPGDNF- 160

Query: 731 KQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
                     Y APE      VST  D+ S G +
Sbjct: 161 --RLLFTAPEYYAPEVHQHDVVSTATDMWSLGTL 192

>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A* Length = 373

 Score = 59.2 bits (144), Expect = 2e-09
 Identities = 29/70 (41%), Positives = 39/70 (55%), Gaps = 11/70 (15%)

Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHI--SDFGIAKLLSGEDQLSKQTQTL 736
           I+S+L YLH   S+ I++ DLKP N+LLD     HI  +DFG+ K     +     T T 
Sbjct: 148 IASALGYLH---SLNIVYRDLKPENILLDSQ--GHIVLTDFGLCKENIEHNST---TSTF 199

Query: 737 -ATIGYMAPE 745
             T  Y+APE
Sbjct: 200 CGTPEYLAPE 209

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 59.8 bits (145), Expect = 2e-09
 Identities = 30/167 (17%), Positives = 48/167 (28%), Gaps = 46/167 (27%)

Query: 641 GMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVK----------------------- 677
           G   A K     +E   ++   E +    +RH  LV                        
Sbjct: 182 GNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTLVNLHDAFEDDNEMVMIYEFMSGGEL 241

Query: 678 ---IISSSLEY---------------LHFGHSIPIIHCDLKPSNVLLDEDMVAHI--SDF 717
              +     +                L   H    +H DLKP N++        +   DF
Sbjct: 242 FEKVADEHNKMSEDEAVEYMRQVCKGLCHMHENNYVHLDLKPENIMFTTKRSNELKLIDF 301

Query: 718 GIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
           G+   L  +  +     T  T  + APE      V    D+ S G++
Sbjct: 302 GLTAHLDPKQSV---KVTTGTAEFAAPEVAEGKPVGYYTDMWSVGVL 345

>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A* Length = 345

 Score = 58.8 bits (143), Expect = 2e-09
 Identities = 28/70 (40%), Positives = 35/70 (50%), Gaps = 11/70 (15%)

Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHI--SDFGIAKLLSGEDQLSKQTQTL 736
           IS +L YLH      II+ DLK  NVLLD +   HI  +D+G+ K           T T 
Sbjct: 119 ISLALNYLH---ERGIIYRDLKLDNVLLDSE--GHIKLTDYGMCKEGLRPG---DTTSTF 170

Query: 737 -ATIGYMAPE 745
             T  Y+APE
Sbjct: 171 CGTPNYIAPE 180

>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A* Length = 410

 Score = 58.9 bits (143), Expect = 3e-09
 Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 14/93 (15%)

Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHI--SDFGIAKLLSGEDQLSKQTQTL 736
           +  +L+ +H   S+  IH D+KP N+LLD+    H+  +DFG    ++ E     +  T 
Sbjct: 177 VVLALDAIH---SMGFIHRDVKPDNMLLDKS--GHLKLADFGTCMKMNKEGM--VRCDTA 229

Query: 737 -ATIGYMAPE-YGTKGRVSTRGDVC---SFGII 764
             T  Y++PE   ++G     G  C   S G+ 
Sbjct: 230 VGTPDYISPEVLKSQGGDGYYGRECDWWSVGVF 262

>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus} Length = 396

 Score = 58.9 bits (143), Expect = 3e-09
 Identities = 28/70 (40%), Positives = 35/70 (50%), Gaps = 11/70 (15%)

Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHI--SDFGIAKLLSGEDQLSKQTQTL 736
           IS +L YLH      II+ DLK  NVLLD +   HI  +D+G+ K           T T 
Sbjct: 162 ISLALNYLH---ERGIIYRDLKLDNVLLDSE--GHIKLTDYGMCKEGLRPG---DTTSTF 213

Query: 737 -ATIGYMAPE 745
             T  Y+APE
Sbjct: 214 CGTPNYIAPE 223

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A* Length = 323

 Score = 58.5 bits (142), Expect = 3e-09
 Identities = 43/184 (23%), Positives = 67/184 (36%), Gaps = 54/184 (29%)

Query: 635 LIGIGN------------GMEVAVKVFH-QQYERALKSFEDECEVRKRIRHRNLVK---I 678
            +G G                VAVK+   ++     ++ + E  + K + H N+VK    
Sbjct: 14  TLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGH 73

Query: 679 ISSS------LEY-------------------------------LHFGHSIPIIHCDLKP 701
                     LEY                               + + H I I H D+KP
Sbjct: 74  RREGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFFHQLMAGVVYLHGIGITHRDIKP 133

Query: 702 SNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPE-YGTKGRVSTRGDVCS 760
            N+LLDE     ISDFG+A +    ++     +   T+ Y+APE    +   +   DV S
Sbjct: 134 ENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWS 193

Query: 761 FGII 764
            GI+
Sbjct: 194 CGIV 197

>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3o71_A 3r63_A 3c9w_A* 2y9q_A* 3sa0_A* 1wzy_A* 2e14_A* 1tvo_A* 2ojg_A* 2oji_A* ... Length = 364

 Score = 58.4 bits (142), Expect = 3e-09
 Identities = 24/61 (39%), Positives = 36/61 (59%), Gaps = 1/61 (1%)

Query: 686 LHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQ-TQTLATIGYMAP 744
           L + HS  ++H DLKPSN+LL+      I DFG+A++   +   +   T+ +AT  Y AP
Sbjct: 141 LKYIHSANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAP 200

Query: 745 E 745
           E
Sbjct: 201 E 201

>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens} Length = 320

 Score = 58.1 bits (141), Expect = 3e-09
 Identities = 28/138 (20%), Positives = 57/138 (41%), Gaps = 19/138 (13%)

Query: 623 LLRATDRFSENNLIGIGNGMEVAVKVFHQQYERALKSFED--------ECEVRKRIRHRN 674
           ++R   R   +N++ +   +             +L             E ++   +    
Sbjct: 61  IIR---RLDHDNIVKVFE-ILGPSGSQLTDDVGSLTELNSVYIVQEYMETDLANVLEQGP 116

Query: 675 LVKIISSSLEY-----LHFGHSIPIIHCDLKPSNVLLD-EDMVAHISDFGIAKLLSGEDQ 728
           L++  +    Y     L + HS  ++H DLKP+N+ ++ ED+V  I DFG+A+++     
Sbjct: 117 LLEEHARLFMYQLLRGLKYIHSANVLHRDLKPANLFINTEDLVLKIGDFGLARIMDPHYS 176

Query: 729 LSKQ-TQTLATIGYMAPE 745
                ++ L T  Y +P 
Sbjct: 177 HKGHLSEGLVTKWYRSPR 194

>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} Length = 362

 Score = 58.5 bits (142), Expect = 4e-09
 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 3/60 (5%)

Query: 686 LHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPE 745
           LH  H   ++H DL P N+LL ++    I DF +A+  + +      T  +    Y APE
Sbjct: 147 LHVLHEAGVVHRDLHPGNILLADNNDITICDFNLAREDTADANK---THYVTHRWYRAPE 203

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A* Length = 361

 Score = 58.5 bits (142), Expect = 4e-09
 Identities = 25/96 (26%), Positives = 39/96 (40%), Gaps = 10/96 (10%)

Query: 673 RNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLL----DEDMVAHISDFGIAKLLSGEDQ 728
            + +K I   + YLH      I H DLKP N++L           + DFG+A  +    +
Sbjct: 118 TSFIKQILDGVNYLHTKK---IAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHEIEDGVE 174

Query: 729 LSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
                    T  ++APE      +    D+ S G+I
Sbjct: 175 F---KNIFGTPEFVAPEIVNYEPLGLEADMWSIGVI 207

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A Length = 321

 Score = 58.0 bits (141), Expect = 4e-09
 Identities = 25/96 (26%), Positives = 39/96 (40%), Gaps = 10/96 (10%)

Query: 673 RNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLL----DEDMVAHISDFGIAKLLSGEDQ 728
            + +K I   + YLH      I H DLKP N++L           + DFG+A  +    +
Sbjct: 118 TSFIKQILDGVNYLHTKK---IAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHEIEDGVE 174

Query: 729 LSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
                    T  ++APE      +    D+ S G+I
Sbjct: 175 F---KNIFGTPEFVAPEIVNYEPLGLEADMWSIGVI 207

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens} Length = 326

 Score = 58.0 bits (141), Expect = 4e-09
 Identities = 27/96 (28%), Positives = 42/96 (43%), Gaps = 10/96 (10%)

Query: 673 RNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLL----DEDMVAHISDFGIAKLLSGEDQ 728
              +K I + + YLH   S+ I H DLKP N++L           I DFG+A  +   ++
Sbjct: 117 TEFLKQILNGVYYLH---SLQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDFGNE 173

Query: 729 LSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
                    T  ++APE      +    D+ S G+I
Sbjct: 174 F---KNIFGTPEFVAPEIVNYEPLGLEADMWSIGVI 206

>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A* Length = 353

 Score = 58.0 bits (141), Expect = 5e-09
 Identities = 26/70 (37%), Positives = 36/70 (51%), Gaps = 11/70 (15%)

Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHI--SDFGIAKLLSGEDQLSKQTQTL 736
           I+  L +L    S  II+ DLK  NV+LD +   HI  +DFG+ K    +      T+T 
Sbjct: 130 IAIGLFFLQ---SKGIIYRDLKLDNVMLDSE--GHIKIADFGMCKENIWDG---VTTKTF 181

Query: 737 -ATIGYMAPE 745
             T  Y+APE
Sbjct: 182 CGTPDYIAPE 191

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A Length = 674

 Score = 58.9 bits (142), Expect = 5e-09
 Identities = 26/70 (37%), Positives = 36/70 (51%), Gaps = 11/70 (15%)

Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHI--SDFGIAKLLSGEDQLSKQTQTL 736
           I+  L +L    S  II+ DLK  NV+LD +   HI  +DFG+ K    +      T+T 
Sbjct: 451 IAIGLFFLQ---SKGIIYRDLKLDNVMLDSE--GHIKIADFGMCKENIWDG---VTTKTF 502

Query: 737 A-TIGYMAPE 745
             T  Y+APE
Sbjct: 503 CGTPDYIAPE 512

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A Length = 328

 Score = 57.7 bits (140), Expect = 6e-09
 Identities = 47/184 (25%), Positives = 67/184 (36%), Gaps = 58/184 (31%)

Query: 636 IGIGN------------GMEVAVKVF--HQQYERALKSFEDECEVRKRIRHRNLVK---I 678
           IG GN            G EVA+K+    Q    +L+    E  + K + H N+VK   +
Sbjct: 23  IGKGNFAKVKLARHILTGREVAIKIIDKTQLNPTSLQKLFREVRIMKILNHPNIVKLFEV 82

Query: 679 ISSS------LEY-------------------------------LHFGHSIPIIHCDLKP 701
           I +       +EY                               + + H   I+H DLK 
Sbjct: 83  IETEKTLYLIMEYASGGEVFDYLVAHGRMKEKEARSKFRQIVSAVQYCHQKRIVHRDLKA 142

Query: 702 SNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPE-YGTKGRVSTRGDVCS 760
            N+LLD DM   I+DFG +   +   +L           Y APE +  K       DV S
Sbjct: 143 ENLLLDADMNIKIADFGFSNEFTVGGKLDAFCGAPP---YAAPELFQGKKYDGPEVDVWS 199

Query: 761 FGII 764
            G+I
Sbjct: 200 LGVI 203

>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens} Length = 353

 Score = 57.6 bits (140), Expect = 6e-09
 Identities = 27/70 (38%), Positives = 34/70 (48%), Gaps = 11/70 (15%)

Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHI--SDFGIAKLLSGEDQLSKQTQTL 736
           I S+L +LH      II+ DLK  NVLLD +   H   +DFG+ K           T T 
Sbjct: 133 IISALMFLH---DKGIIYRDLKLDNVLLDHE--GHCKLADFGMCKEGICNGVT---TATF 184

Query: 737 -ATIGYMAPE 745
             T  Y+APE
Sbjct: 185 CGTPDYIAPE 194

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 58.7 bits (141), Expect = 6e-09
 Identities = 80/534 (14%), Positives = 157/534 (29%), Gaps = 176/534 (32%)

Query: 7   ISQHQQALLALKAHISYDHTNL-------FARNWTSSTSVCIWIGITCDVNSHRVIGLNI 59
             + +QALL L+        N+         + W +   VC+   + C     ++  LN+
Sbjct: 137 YLKLRQALLELR-----PAKNVLIDGVLGSGKTWVAL-DVCLSYKVQC-KMDFKIFWLNL 189

Query: 60  SSFNLQGTITPQLGNLSSLQTLDLSHNKLSGNIPSSIFNMHTLK---------------L 104
            + N   T+   L  L  L  +D +    S +  +    +H+++               L
Sbjct: 190 KNCNSPETVLEMLQKL--LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL 247

Query: 105 L---DFSDNQLFGSLSSFIFNMSS---MTTIDLSI-NRLSGELPANICKIPSTLSKCKQL 157
           L   +  + + + +     FN+S    +TT    + + LS     +I            L
Sbjct: 248 LVLLNVQNAKAWNA-----FNLSCKILLTTRFKQVTDFLSAATTTHIS-----------L 291

Query: 158 EELNLGFNNLSGAIPKEIGNLTKLKEIISTITNSTVCEIPREIGNLPYLARLALATNNLV 217
           +  ++         P E      +K ++    +    ++PRE           L TN   
Sbjct: 292 DHHSMTLT------PDE------VKSLLLKYLDCRPQDLPRE----------VLTTNPRR 329

Query: 218 GVVPVTIFNMSALKEISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSITNSS 277
                          +S++  S+     +  D    N + +N   +  +  I SS+    
Sbjct: 330 ---------------LSIIAESIR-DGLATWD----NWKHVN--CDKLTTIIESSLNV-- 365

Query: 278 KLSDLELGENLFSGF--------IPNTI-----GNLRNLEFGNIAD------------NY 312
            L   E    +F           IP  +      ++   +   + +              
Sbjct: 366 -LEPAEY-RKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKE 423

Query: 313 LTSSTPELSFLSSLTNCKKLKVL---IVT------GNPLDGILPKSIGNFSLS-----LE 358
            T S P + +L      +    L   IV           D ++P  +  +  S     L+
Sbjct: 424 STISIPSI-YLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLK 482

Query: 359 TILMANCSISGNIPQVVGNLSNLLV--------LELGGNNLTGPIPVTFSQLQTLQAFDL 410
            I            + +     + +        +            +    L TLQ    
Sbjct: 483 NIEHP---------ERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSI----LNTLQQLKF 529

Query: 411 TRNKLAGPITDELCHLARLHSLVLQGNKFSGSIPSCLGNLTS---VRVLYLGLN 461
            +      I D      RL + +L    F   +P    NL       +L + L 
Sbjct: 530 YKPY----ICDNDPKYERLVNAIL---DF---LPKIEENLICSKYTDLLRIALM 573

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 53.7 bits (128), Expect = 2e-07
 Identities = 85/527 (16%), Positives = 167/527 (31%), Gaps = 151/527 (28%)

Query: 281 DLELGE------NLFSGFIPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKV 334
           D E GE      ++ S F    +    N +  ++ D              S+ + +++  
Sbjct: 8   DFETGEHQYQYKDILSVFEDAFV---DNFDCKDVQD-----------MPKSILSKEEIDH 53

Query: 335 LIVTGNPLDGILPKSIGNFSLSLETILMANCSISGNIPQVVGNLSNLLVLELGGNNLTGP 394
           +I++ + + G L            T+L     +   + + V       VL +    L  P
Sbjct: 54  IIMSKDAVSGTL--------RLFWTLLSKQEEM---VQKFVEE-----VLRINYKFLMSP 97

Query: 395 I------P------------VTFSQLQTLQAFDLTRNKLAGPITDELCHLARLHSLVLQG 436
           I      P              ++  Q    ++++R +    +   L  L    ++++ G
Sbjct: 98  IKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDG 157

Query: 437 NKFSGSIPSCLGN--LTSVRVL-YLGLNIFTSVLSSTIWNLKDILFIDVSSNFLDGPLSL 493
              SG   + +      S +V   +   IF        W       +++ +      +  
Sbjct: 158 VLGSGK--TWVALDVCLSYKVQCKMDFKIF--------W-------LNLKNCNSPETVLE 200

Query: 494 DIGNLKVVIGLDF-SRNNLSGDIPITIGEGE-----IPRGGPFAN-L----------TAK 536
            +  L   I  ++ SR++ S +I + I   +     + +  P+ N L             
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWN 260

Query: 537 SFMGNELLCGLPDLQVSPCK-----PNKPNTHKKSRKMLLLVIVLPLSTALIVVVTLTLK 591
           +F          +L    CK       K  T   S      + +   S  L      +L 
Sbjct: 261 AF----------NLS---CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL- 306

Query: 592 WKLIKCWKSRTG--PSNDGINSPQAIRRFSYHELLR---AT-DRFSENNLIGIGNGMEVA 645
             L+K    R    P      +P+ +   +  E +R   AT D +   N   +   +E +
Sbjct: 307 --LLKYLDCRPQDLPREVLTTNPRRLSIIA--ESIRDGLATWDNWKHVNCDKLTTIIESS 362

Query: 646 VKVF----HQQYERALKSFEDE------------CEVRKRIRHRNLVKIISSSL------ 683
           + V     +++    L  F                +V K      + K+   SL      
Sbjct: 363 LNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPK 422

Query: 684 EYLHFGHSIPIIHCDLKPSNVLLDEDMVAH---ISDFGIAKLLSGED 727
           E      SIP I+ +LK     L+ +   H   +  + I K    +D
Sbjct: 423 EST---ISIPSIYLELKVK---LENEYALHRSIVDHYNIPKTFDSDD 463

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A* Length = 327

 Score = 57.3 bits (139), Expect = 7e-09
 Identities = 28/108 (25%), Positives = 51/108 (47%), Gaps = 9/108 (8%)

Query: 659 SFEDECEVRKRIRHRNLVKI---ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHIS 715
           +F         +  + L+     ++  ++YL        IH DL   N+L+ E+ VA I+
Sbjct: 128 AFAIANSTASTLSSQQLLHFAADVARGMDYLS---QKQFIHRDLAARNILVGENYVAKIA 184

Query: 716 DFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGI 763
           DFG+++   G++   K+T     + +MA E       +T  DV S+G+
Sbjct: 185 DFGLSR---GQEVYVKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGV 229

>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A* Length = 464

 Score = 57.9 bits (140), Expect = 8e-09
 Identities = 27/83 (32%), Positives = 38/83 (45%), Gaps = 6/83 (7%)

Query: 682 SLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGY 741
            +++LH      IIH DLKPSN+++  D    I DFG+A+       +   T  + T  Y
Sbjct: 176 GIKHLHSAG---IIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMM---TPYVVTRYY 229

Query: 742 MAPEYGTKGRVSTRGDVCSFGII 764
            APE           D+ S G I
Sbjct: 230 RAPEVILGMGYKENVDIWSVGCI 252

>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A* Length = 345

 Score = 57.2 bits (139), Expect = 9e-09
 Identities = 28/70 (40%), Positives = 38/70 (54%), Gaps = 11/70 (15%)

Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHI--SDFGIAKLLSGEDQLSKQTQTL 736
           I   L++LH   S  I++ DLK  N+LLD+D   HI  +DFG+ K     D    +T T 
Sbjct: 127 IILGLQFLH---SKGIVYRDLKLDNILLDKD--GHIKIADFGMCKENMLGD---AKTNTF 178

Query: 737 -ATIGYMAPE 745
             T  Y+APE
Sbjct: 179 CGTPDYIAPE 188

>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens} Length = 412

 Score = 57.4 bits (139), Expect = 1e-08
 Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 10/70 (14%)

Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHI--SDFGIAKLLSGEDQLSKQTQTL 736
           I  +++ +H    +  +H D+KP N+LLD     HI  +DFG    L  +   + ++   
Sbjct: 171 IVMAIDSVH---RLGYVHRDIKPDNILLDRC--GHIRLADFGSCLKLRADG--TVRSLVA 223

Query: 737 -ATIGYMAPE 745
             T  Y++PE
Sbjct: 224 VGTPDYLSPE 233

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 55.4 bits (134), Expect = 1e-08
 Identities = 32/166 (19%), Positives = 64/166 (38%), Gaps = 38/166 (22%)

Query: 76  SSLQTLDLSHNKLSGNIPSSIFNMHT-LKLLDFSDNQLFGSLSSFIFN-MSSMTTIDLSI 133
            ++  + L  N +   IP   F+ +  L+ +D S+NQ+   L+   F  + S+ ++ L  
Sbjct: 32  ETITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQI-SELAPDAFQGLRSLNSLVLYG 89

Query: 134 NRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEIGNLTKLKEIISTITNSTV 193
           N+++ ELP ++            L+ L L  N ++                         
Sbjct: 90  NKIT-ELPKSL------FEGLFSLQLLLLNANKIN------------------------- 117

Query: 194 CEIPREI-GNLPYLARLALATNNLVGVVPVTIFNMSALKEISLLNN 238
             +  +   +L  L  L+L  N L  +   T   + A++ + L  N
Sbjct: 118 -CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 52.7 bits (127), Expect = 9e-08
 Identities = 24/114 (21%), Positives = 46/114 (40%), Gaps = 13/114 (11%)

Query: 74  NLSSLQTLDLSHNKLSGNIPSSIFN-MHTLKLLDFSDNQLFGSLSSFIF-NMSSMTTIDL 131
               L+ +DLS+N++S  +    F  + +L  L    N++   L   +F  + S+  + L
Sbjct: 54  PYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKI-TELPKSLFEGLFSLQLLLL 111

Query: 132 SINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEI-GNLTKLKEI 184
           + N+++  L                L  L+L  N L   I K     L  ++ +
Sbjct: 112 NANKIN-CLR------VDAFQDLHNLNLLSLYDNKLQ-TIAKGTFSPLRAIQTM 157

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 50.4 bits (121), Expect = 5e-07
 Identities = 24/110 (21%), Positives = 45/110 (40%), Gaps = 2/110 (1%)

Query: 377 NLSNLLVLELGGNNLTGPIPVTFSQLQTLQAFDLTRNKLAGPITDELCHLARLHSLVLQG 436
               L  ++L  N ++   P  F  L++L +  L  NK+          L  L  L+L  
Sbjct: 54  PYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNA 113

Query: 437 NKFSGSIPS-CLGNLTSVRVLYLGLNIFTSVLSSTIWNLKDILFIDVSSN 485
           NK +  +      +L ++ +L L  N   ++   T   L+ I  + ++ N
Sbjct: 114 NKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 46.2 bits (110), Expect = 1e-05
 Identities = 31/123 (25%), Positives = 53/123 (43%), Gaps = 8/123 (6%)

Query: 366 SISGNIPQVVGNLSNLLVLELGGNNLTGPIPVTFSQLQTLQAFDLTRNKLAGPITDELCH 425
            I  N+P        +  + L  N +    P  FS  + L+  DL+ N+++    D    
Sbjct: 25  EIPTNLP------ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQG 78

Query: 426 LARLHSLVLQGNKFSGSIPS-CLGNLTSVRVLYLGLNIFTSVLSSTIWNLKDILFIDVSS 484
           L  L+SLVL GNK +  +P      L S+++L L  N    +      +L ++  + +  
Sbjct: 79  LRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYD 137

Query: 485 NFL 487
           N L
Sbjct: 138 NKL 140

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 46.2 bits (110), Expect = 1e-05
 Identities = 35/165 (21%), Positives = 66/165 (40%), Gaps = 16/165 (9%)

Query: 127 TTIDLSINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEIGNLTKLKEIIS 186
             +D     L+ E+P N+   P T+       E+ L  N +    P       KL+ I  
Sbjct: 14  NIVDCRGKGLT-EIPTNL---PETI------TEIRLEQNTIKVIPPGAFSPYKKLRRI-- 61

Query: 187 TITNSTVCEIPREI-GNLPYLARLALATNNLVGVVPVTIF-NMSALKEISLLNNSLSGSL 244
            ++N+ + E+  +    L  L  L L  N +   +P ++F  + +L+ + L  N ++  L
Sbjct: 62  DLSNNQISELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKIN-CL 119

Query: 245 PSRIDLSLPNVETLNLGINSFSGTIPSSITNSSKLSDLELGENLF 289
                  L N+  L+L  N        + +    +  + L +N F
Sbjct: 120 RVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens} Length = 335

 Score = 56.7 bits (137), Expect = 1e-08
 Identities = 26/84 (30%), Positives = 34/84 (40%), Gaps = 12/84 (14%)

Query: 662 DECEVRKRIRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAK 721
           DE       R       + S++ YL       IIH D+K  N+++ ED    + DFG A 
Sbjct: 128 DEPLASYIFRQ------LVSAVGYLRLKD---IIHRDIKDENIVIAEDFTIKLIDFGSAA 178

Query: 722 LLSGEDQLSKQTQTLATIGYMAPE 745
            L         T    TI Y APE
Sbjct: 179 YLERGKLFY--T-FCGTIEYCAPE 199

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 57.0 bits (138), Expect = 1e-08
 Identities = 54/357 (15%), Positives = 123/357 (34%), Gaps = 57/357 (15%)

Query: 72  LGNLSSLQTLDLSHNKLSGNIPSSIF-----NMHTLKLLDFSDNQL----FGSLSSFI-F 121
                 + +LDLS N L       +         ++  L+ S N L       L   +  
Sbjct: 18  TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAA 77

Query: 122 NMSSMTTIDLSINRLSGELPANICKIPSTLSKCK-QLEELNLGFNNLSGAIPKEIGNLTK 180
             +++T+++LS N LS +   +  ++  TL+     +  L+LG+N+ S     E      
Sbjct: 78  IPANVTSLNLSGNFLSYK---SSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQA-- 132

Query: 181 LKEIISTIT--NSTVCEIPREIGNLPYLARLALATNNLVGVVPVTIFNMSALKEISLLNN 238
              + ++IT  N    ++  +  +   L +  LA               + +  ++L  N
Sbjct: 133 FSNLPASITSLNLRGNDLGIKSSD--ELIQ-ILAAIP------------ANVNSLNLRGN 177

Query: 239 SLS----GSLPSRIDLSLPNVETLNLGINSFSGTIPSSI-----TNSSKLSDLELGENLF 289
           +L+      L   +     +V +L+L  N       + +     +  + +  L L  N  
Sbjct: 178 NLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCL 237

Query: 290 SG----FIPNTIGNLRNLEFGNIADNYLTSSTPEL--SFLSSLTNCKKLKVLIVTGNPL- 342
            G     +     +L++L+   +  + + + + E   +  ++  N +K+ ++   G  + 
Sbjct: 238 HGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIH 297

Query: 343 -DGI--LPKSIGNFSLSLETILMANCSIS-----GNIPQVVGNLSNLLVLELGGNNL 391
                 +   I   S   +   + N  +          + +     L         L
Sbjct: 298 PSHSIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQTCKPL 354

>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ... Length = 367

 Score = 57.0 bits (138), Expect = 1e-08
 Identities = 41/136 (30%), Positives = 60/136 (44%), Gaps = 30/136 (22%)

Query: 623 LLRATDRFSENNLIGIGNGMEVAVKVFHQQYERALKSFED--------ECEVRKRIRHRN 674
           LL+        N+IG+ +       VF     R+L+ F D          ++   ++ + 
Sbjct: 81  LLK---HMKHENVIGLLD-------VFTPA--RSLEEFNDVYLVTHLMGADLNNIVKCQK 128

Query: 675 LVKIISSSLEY-----LHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQL 729
           L       L Y     L + HS  IIH DLKPSN+ ++ED    I DFG+A+  + E   
Sbjct: 129 LTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTADE--- 185

Query: 730 SKQTQTLATIGYMAPE 745
              T  +AT  Y APE
Sbjct: 186 --MTGYVATRWYRAPE 199

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A* Length = 289

 Score = 56.1 bits (136), Expect = 1e-08
 Identities = 36/190 (18%), Positives = 59/190 (31%), Gaps = 61/190 (32%)

Query: 634 NLIGIGNGMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVKIIS------------- 680
              G  +  EV +KV  + +    +SF +   +  ++ H++LV                 
Sbjct: 33  GDYGQLHETEVLLKVLDKAHRNYSESFFEAASMMSKLSHKHLVLNYGVCVCGDENILVQE 92

Query: 681 -----SSLEYLH-FGHSIPI----------------------IHCDLKPSNVLLD----- 707
                S   YL    + I I                      IH ++   N+LL      
Sbjct: 93  FVKFGSLDTYLKKNKNCINILWKLEVAKQLAAAMHFLEENTLIHGNVCAKNILLIREEDR 152

Query: 708 ---EDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRV-STRGDVCSFG- 762
                    +SD GI+  +  +D           I ++ PE     +  +   D  SFG 
Sbjct: 153 KTGNPPFIKLSDPGISITVLPKD------ILQERIPWVPPECIENPKNLNLATDKWSFGT 206

Query: 763 ----IISGGK 768
               I SGG 
Sbjct: 207 TLWEICSGGD 216

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A* Length = 303

 Score = 56.2 bits (136), Expect = 1e-08
 Identities = 31/91 (34%), Positives = 43/91 (47%), Gaps = 19/91 (20%)

Query: 683 LEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIG-- 740
           LEYLH       IH D+K  N+LL ED    I+DFG++  L+    +++       +G  
Sbjct: 134 LEYLH---KNGQIHRDVKAGNILLGEDGSVQIADFGVSAFLATGGDITRNKVRKTFVGTP 190

Query: 741 -YMAPE-------YGTKGRVSTRGDVCSFGI 763
            +MAPE       Y  K       D+ SFGI
Sbjct: 191 CWMAPEVMEQVRGYDFK------ADIWSFGI 215

>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A* Length = 353

 Score = 56.1 bits (136), Expect = 2e-08
 Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 8/68 (11%)

Query: 686 LHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQ--------TQTLA 737
           +   H   +IH DLKPSN+L++ +    + DFG+A+++      + +         + +A
Sbjct: 125 VKVLHGSNVIHRDLKPSNLLINSNCDLKVCDFGLARIIDESAADNSEPTGQQSGMVEFVA 184

Query: 738 TIGYMAPE 745
           T  Y APE
Sbjct: 185 TRWYRAPE 192

>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7 Length = 367

 Score = 55.8 bits (135), Expect = 2e-08
 Identities = 29/88 (32%), Positives = 42/88 (47%), Gaps = 10/88 (11%)

Query: 663 ECEVRKRIRHRNLVKIISSSLEY-----LHFGHSIPIIHCDLKPSNVLLDEDMVAHISDF 717
             ++ K ++H  L +     L Y     L + H+  IIH DLKP N+ ++ED    I DF
Sbjct: 113 GTDLGKLMKHEKLGEDRIQFLVYQMLKGLRYIHAAGIIHRDLKPGNLAVNEDCELKILDF 172

Query: 718 GIAKLLSGEDQLSKQTQTLATIGYMAPE 745
           G+A+    E      T  + T  Y APE
Sbjct: 173 GLARQADSE-----MTGYVVTRWYRAPE 195

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A* Length = 348

 Score = 55.5 bits (134), Expect = 3e-08
 Identities = 38/172 (22%), Positives = 60/172 (34%), Gaps = 52/172 (30%)

Query: 638 IGNGMEVAVKV---FHQQYERALKSFEDECEVRKRIRHRNLVKIISSSL---------EY 685
           + N   VA+K      +Q     +    E    +++RH N ++     L         EY
Sbjct: 76  VRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLVMEY 135

Query: 686 -------------------------------LHFGHSIPIIHCDLKPSNVLLDEDMVAHI 714
                                          L + HS  +IH D+K  N+LL E  +  +
Sbjct: 136 CLGSASDLLEVHKKPLQEVEIAAVTHGALQGLAYLHSHNMIHRDVKAGNILLSEPGLVKL 195

Query: 715 SDFGIAKLLSGEDQLSKQTQTLATIGYMAPE---YGTKGRVSTRGDVCSFGI 763
            DFG A        ++     + T  +MAPE      +G+   + DV S GI
Sbjct: 196 GDFGSAS------IMAPANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGI 241

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A* Length = 302

 Score = 55.0 bits (133), Expect = 3e-08
 Identities = 41/195 (21%), Positives = 65/195 (33%), Gaps = 60/195 (30%)

Query: 627 TDRFSENNLIGIG------------NGMEVAVKVFHQQYERALKSFEDECEVRKRIRHRN 674
            + +     +G G             G   A KV   + E  L+ +  E E+     H  
Sbjct: 18  NEVWEIVGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYIVEIEILATCDHPY 77

Query: 675 LVKIISSSL---------EY--------------------------------LHFGHSIP 693
           +VK++ +           E+                                L+F HS  
Sbjct: 78  IVKLLGAYYHDGKLWIMIEFCPGGAVDAIMLELDRGLTEPQIQVVCRQMLEALNFLHSKR 137

Query: 694 IIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVS 753
           IIH DLK  NVL+  +    ++DFG++        L K+   + T  +MAPE      + 
Sbjct: 138 IIHRDLKAGNVLMTLEGDIRLADFGVSAKNL--KTLQKRDSFIGTPYWMAPEVVMCETMK 195

Query: 754 TRG-----DVCSFGI 763
                   D+ S GI
Sbjct: 196 DTPYDYKADIWSLGI 210

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A* Length = 276

 Score = 54.5 bits (132), Expect = 3e-08
 Identities = 45/189 (23%), Positives = 75/189 (39%), Gaps = 65/189 (34%)

Query: 635 LIGIGN------------GMEVAVKVFHQQYERALKSFED------ECEVRKRIRHRNLV 676
            +G+G             G +VAVK+ ++Q    ++S +       E +  K  RH +++
Sbjct: 18  TLGVGTFGKVKIGEHQLTGHKVAVKILNRQ---KIRSLDVVGKIKREIQNLKLFRHPHII 74

Query: 677 K---IISSS------LEY-------------------------------LHFGHSIPIIH 696
           K   +IS+       +EY                               + + H   ++H
Sbjct: 75  KLYQVISTPTDFFMVMEYVSGGELFDYICKHGRVEEMEARRLFQQILSAVDYCHRHMVVH 134

Query: 697 CDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPE-YGTKGRVSTR 755
            DLKP NVLLD  M A I+DFG++ ++S  + L     +     Y APE    +      
Sbjct: 135 RDLKPENVLLDAHMNAKIADFGLSNMMSDGEFLRTSCGSPN---YAAPEVISGRLYAGPE 191

Query: 756 GDVCSFGII 764
            D+ S G+I
Sbjct: 192 VDIWSCGVI 200

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 53.9 bits (130), Expect = 3e-08
 Identities = 30/165 (18%), Positives = 59/165 (35%), Gaps = 35/165 (21%)

Query: 76  SSLQTLDLSHNKLSGNIPSSIFNMHT-LKLLDFSDNQLFGSLSSFIFN-MSSMTTIDLSI 133
                L L++N+ +    + IF     L+ ++FS+N++   +    F   S +  I L+ 
Sbjct: 32  QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKI-TDIEEGAFEGASGVNEILLTS 90

Query: 134 NRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEIGNLTKLKEIISTITNSTV 193
           NRL   +   +          + L+ L L  N ++  +  +                   
Sbjct: 91  NRLE-NVQHKM------FKGLESLKTLMLRSNRIT-CVGNDSFI---------------- 126

Query: 194 CEIPREIGNLPYLARLALATNNLVGVVPVTIFNMSALKEISLLNN 238
                    L  +  L+L  N +  V P     + +L  ++LL N
Sbjct: 127 --------GLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 51.2 bits (123), Expect = 2e-07
 Identities = 20/114 (17%), Positives = 47/114 (41%), Gaps = 13/114 (11%)

Query: 74  NLSSLQTLDLSHNKLSGNIPSSIFN-MHTLKLLDFSDNQLFGSLSSFIF-NMSSMTTIDL 131
            L  L+ ++ S+NK++ +I    F     +  +  + N+L  ++   +F  + S+ T+ L
Sbjct: 55  KLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTSNRL-ENVQHKMFKGLESLKTLML 112

Query: 132 SINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEI-GNLTKLKEI 184
             NR++  +         +      +  L+L  N ++  +       L  L  +
Sbjct: 113 RSNRIT-CVG------NDSFIGLSSVRLLSLYDNQIT-TVAPGAFDTLHSLSTL 158

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 48.1 bits (115), Expect = 3e-06
 Identities = 25/110 (22%), Positives = 44/110 (40%), Gaps = 2/110 (1%)

Query: 377 NLSNLLVLELGGNNLTGPIPVTFSQLQTLQAFDLTRNKLAGPITDELCHLARLHSLVLQG 436
            L  L  +    N +T      F     +    LT N+L          L  L +L+L+ 
Sbjct: 55  KLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRS 114

Query: 437 NKFSGSIPS-CLGNLTSVRVLYLGLNIFTSVLSSTIWNLKDILFIDVSSN 485
           N+ +  + +     L+SVR+L L  N  T+V       L  +  +++ +N
Sbjct: 115 NRIT-CVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 46.2 bits (110), Expect = 1e-05
 Identities = 21/94 (22%), Positives = 40/94 (42%), Gaps = 12/94 (12%)

Query: 75  LSSLQTLDLSHNKLSGNIPSSIF-NMHTLKLLDFSDNQLFGSLSSFIF-NMSSMTTIDLS 132
            S +  + L+ N+L  N+   +F  + +LK L    N++   + +  F  +SS+  + L 
Sbjct: 80  ASGVNEILLTSNRLE-NVQHKMFKGLESLKTLMLRSNRI-TCVGNDSFIGLSSVRLLSLY 137

Query: 133 INRLSGELPANICKIPSTLSKCKQLEELNLGFNN 166
            N+++  +       P        L  LNL   N
Sbjct: 138 DNQIT-TVA------PGAFDTLHSLSTLNL-LAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 43.5 bits (103), Expect = 9e-05
 Identities = 18/63 (28%), Positives = 37/63 (58%), Gaps = 4/63 (6%)

Query: 74  NLSSLQTLDLSHNKLSGNIPSSIF-NMHTLKLLDFSDNQLFGSLSSFIF-NMSSMTTIDL 131
            L SL+TL L  N+++  + +  F  + +++LL   DNQ+  +++   F  + S++T++L
Sbjct: 103 GLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQI-TTVAPGAFDTLHSLSTLNL 160

Query: 132 SIN 134
             N
Sbjct: 161 LAN 163

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A Length = 361

 Score = 55.4 bits (134), Expect = 3e-08
 Identities = 44/201 (21%), Positives = 62/201 (30%), Gaps = 73/201 (36%)

Query: 602 TGPSNDGINSPQAIRRFSYHELLRATDRFSENNLIGIGN------------GMEVAVKVF 649
             P   G      +     ++ ++          IG GN               VAVK  
Sbjct: 3   RAPVTTGPLDMPIMHDSDRYDFVK---------DIGSGNFGVARLMRDKLTKELVAVKYI 53

Query: 650 HQQYERALKSFED---ECEVRKRIRHRNLVK---IISSS------LEY------------ 685
               ER     E+   E    + +RH N+V+   +I +       +EY            
Sbjct: 54  ----ERGAAIDENVQREIINHRSLRHPNIVRFKEVILTPTHLAIIMEYASGGELYERICN 109

Query: 686 -------------------LHFGHSIPIIHCDLKPSNVLLDEDMVAH--ISDFGIAKLLS 724
                              + + HS+ I H DLK  N LLD        I DFG +K   
Sbjct: 110 AGRFSEDEARFFFQQLLSGVSYCHSMQICHRDLKLENTLLDGSPAPRLKICDFGYSKSSV 169

Query: 725 GEDQLSKQTQTLATIGYMAPE 745
              Q      T A   Y+APE
Sbjct: 170 LHSQPKSTVGTPA---YIAPE 187

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe} Length = 336

 Score = 55.0 bits (133), Expect = 4e-08
 Identities = 42/188 (22%), Positives = 72/188 (38%), Gaps = 64/188 (34%)

Query: 635 LIGIGN------------GMEVAVKVFHQQYERALKSFEDECEVR------KRIRHRNLV 676
            +G G+              +VA+K   +Q    LK  +    V       K +RH +++
Sbjct: 16  TLGEGSFGKVKLATHYKTQQKVALKFISRQ---LLKKSDMHMRVEREISYLKLLRHPHII 72

Query: 677 K---IISSS------LEY------------------------------LHFGHSIPIIHC 697
           K   +I++       +EY                              + + H   I+H 
Sbjct: 73  KLYDVITTPTDIVMVIEYAGGELFDYIVEKKRMTEDEGRRFFQQIICAIEYCHRHKIVHR 132

Query: 698 DLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPE-YGTKGRVSTRG 756
           DLKP N+LLD+++   I+DFG++ +++  + L     +     Y APE    K       
Sbjct: 133 DLKPENLLLDDNLNVKIADFGLSNIMTDGNFLKTSCGSPN---YAAPEVINGKLYAGPEV 189

Query: 757 DVCSFGII 764
           DV S GI+
Sbjct: 190 DVWSCGIV 197

>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens} Length = 353

 Score = 54.6 bits (132), Expect = 5e-08
 Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 5/60 (8%)

Query: 686 LHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPE 745
           L + HS  ++H DLKP N+ ++ED    I DFG+A+    E      T  + T  Y APE
Sbjct: 139 LKYIHSAGVVHRDLKPGNLAVNEDCELKILDFGLARHADAE-----MTGYVVTRWYRAPE 193

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B* Length = 389

 Score = 54.9 bits (132), Expect = 6e-08
 Identities = 27/183 (14%), Positives = 53/183 (28%), Gaps = 63/183 (34%)

Query: 638 IGNGMEVAVKVF--HQQYERALKSFEDECEVRKRIRHRNLVKIISSSL---------EYL 686
              G  V V+           +   + E  V K   H N+V   ++ +          ++
Sbjct: 49  KPTGEYVTVRRINLEACSNEMVTFLQGELHVSKLFNHPNIVPYRATFIADNELWVVTSFM 108

Query: 687 HFG---------------------------------HSIPIIHCDLKPSNVLLDEDMVAH 713
            +G                                 H +  +H  +K S++L+  D   +
Sbjct: 109 AYGSAKDLICTHFMDGMNELAIAYILQGVLKALDYIHHMGYVHRSVKASHILISVDGKVY 168

Query: 714 ISDFGIAKLLS--GEDQLSKQTQTLATIG---YMAPE--------YGTKGRVSTRGDVCS 760
           +S       +   G+ Q         ++    +++PE        Y  K       D+ S
Sbjct: 169 LSGLRSNLSMISHGQRQRVVHDFPKYSVKVLPWLSPEVLQQNLQGYDAK------SDIYS 222

Query: 761 FGI 763
            GI
Sbjct: 223 VGI 225

>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A* Length = 432

 Score = 54.8 bits (132), Expect = 7e-08
 Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 4/74 (5%)

Query: 686 LHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPE 745
            +F H   IIH DLKP+N LL++D    + DFG+A+ ++ E   +               
Sbjct: 142 ENFIHESGIIHRDLKPANCLLNQDCSVKVCDFGLARTINSEKDTNIVNDLEENEEPGPHN 201

Query: 746 YGTKGR----VSTR 755
              K +    V TR
Sbjct: 202 KNLKKQLTSHVVTR 215

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 52.0 bits (125), Expect = 9e-08
 Identities = 25/117 (21%), Positives = 39/117 (33%), Gaps = 9/117 (7%)

Query: 324 SSLTNCKKLKVLIVTGNPLDGILPKSIGNFSLSLETILMANCSIS--GNIPQVVGNLSNL 381
           +  TN  + + L + G  +  I  +++G      + I  ++  I      P     L  L
Sbjct: 13  AQYTNAVRDRELDLRGYKIPVI--ENLGATLDQFDAIDFSDNEIRKLDGFP----LLRRL 66

Query: 382 LVLELGGNNLTGPIPVTFSQLQTLQAFDLTRNKLAGPIT-DELCHLARLHSLVLQGN 437
             L +  N +          L  L    LT N L      D L  L  L  L +  N
Sbjct: 67  KTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 47.0 bits (112), Expect = 4e-06
 Identities = 22/120 (18%), Positives = 39/120 (32%), Gaps = 14/120 (11%)

Query: 226 NMSALKEISLLNNSLSGSLPSRIDLSLPNVETLNL---GINSFSGTIPSSITNSSKLSDL 282
           N    +E+ L    +   +   +  +L   + ++     I    G          +L  L
Sbjct: 17  NAVRDRELDLRGYKIP--VIENLGATLDQFDAIDFSDNEIRKLDG-----FPLLRRLKTL 69

Query: 283 ELGENLFSGFIPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPL 342
            +  N            L +L    + +N L     EL  L  L + K L  L +  NP+
Sbjct: 70  LVNNNRICRIGEGLDQALPDLTELILTNNSLV----ELGDLDPLASLKSLTYLCILRNPV 125

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 41.2 bits (97), Expect = 3e-04
 Identities = 27/136 (19%), Positives = 45/136 (33%), Gaps = 22/136 (16%)

Query: 135 RLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEIGNLTKLKEI------ISTI 188
           +L+ EL   I +     +   +  EL+L    +   I      L +   I      I  +
Sbjct: 3   KLTAEL---IEQAAQ-YTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL 57

Query: 189 TNSTVCEIPREIGNLPYLARLALATNNLVGVVPVTIFNMSALKEISLLNNSLSGSLPSRI 248
                         L  L  L +  N +  +       +  L E+ L NNSL   L    
Sbjct: 58  DG---------FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLD 107

Query: 249 DLS-LPNVETLNLGIN 263
            L+ L ++  L +  N
Sbjct: 108 PLASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 40.4 bits (95), Expect = 7e-04
 Identities = 17/87 (19%), Positives = 30/87 (34%), Gaps = 7/87 (8%)

Query: 377 NLSNLLVLELGGNNLT--GPIPVTFSQLQTLQAFDLTRNKLAGPITDELCHLARLHSLVL 434
           N      L+L G  +     +  T  Q   +   D + N++   +      L RL +L++
Sbjct: 17  NAVRDRELDLRGYKIPVIENLGATLDQFDAI---DFSDNEIR-KLDG-FPLLRRLKTLLV 71

Query: 435 QGNKFSGSIPSCLGNLTSVRVLYLGLN 461
             N+           L  +  L L  N
Sbjct: 72  NNNRICRIGEGLDQALPDLTELILTNN 98

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens} Length = 326

 Score = 53.5 bits (129), Expect = 1e-07
 Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 10/86 (11%)

Query: 683 LEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYM 742
           L +LH      +IH D+K  NVLL E+    + DFG++  L     + ++   + T  +M
Sbjct: 142 LSHLHQHK---VIHRDIKGQNVLLTENAEVKLVDFGVSAQLD--RTVGRRNTFIGTPYWM 196

Query: 743 APEYGTKGRVSTRG-----DVCSFGI 763
           APE                D+ S GI
Sbjct: 197 APEVIACDENPDATYDFKSDLWSLGI 222

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus} Length = 476

 Score = 54.0 bits (130), Expect = 1e-07
 Identities = 46/189 (24%), Positives = 75/189 (39%), Gaps = 65/189 (34%)

Query: 635 LIGIGN------------GMEVAVKVFHQQ---YERALKSFEDECEVRKRIRHRNLVK-- 677
            +G+G             G +VAVK+ ++Q       +     E +  K  RH +++K  
Sbjct: 23  TLGVGTFGKVKVGKHELTGHKVAVKILNRQKIRSLDVVGKIRREIQNLKLFRHPHIIKLY 82

Query: 678 -IISSS------LEY-------------------------------LHFGHSIPIIHCDL 699
            +IS+       +EY                               + + H   ++H DL
Sbjct: 83  QVISTPSDIFMVMEYVSGGELFDYICKNGRLDEKESRRLFQQILSGVDYCHRHMVVHRDL 142

Query: 700 KPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIG---YMAPE-YGTKGRVSTR 755
           KP NVLLD  M A I+DFG++ ++S  + L  +T    + G   Y APE    +      
Sbjct: 143 KPENVLLDAHMNAKIADFGLSNMMSDGEFL--RT----SCGSPNYAAPEVISGRLYAGPE 196

Query: 756 GDVCSFGII 764
            D+ S G+I
Sbjct: 197 VDIWSSGVI 205

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 51.6 bits (124), Expect = 1e-07
 Identities = 25/116 (21%), Positives = 46/116 (39%), Gaps = 14/116 (12%)

Query: 68  ITPQLGNLSSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQLFGSLSSFIFNMSSMT 127
           +   L  L + + L LS N +   I SS+  M  L++L    N +   + +      ++ 
Sbjct: 40  MDATLSTLKACKHLALSTNNIE-KI-SSLSGMENLRILSLGRNLI-KKIENLDAVADTLE 96

Query: 128 TIDLSINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEIGNLTKLKE 183
            + +S N+        I  + S + K   L  L +  N ++     EI  L  L +
Sbjct: 97  ELWISYNQ--------IASL-SGIEKLVNLRVLYMSNNKITN--WGEIDKLAALDK 141

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 45.1 bits (107), Expect = 2e-05
 Identities = 28/119 (23%), Positives = 51/119 (42%), Gaps = 9/119 (7%)

Query: 72  LGNLSSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQLFGSLSSFIFNMSSMTTIDL 131
           L  + +L+ L L  N +   I +      TL+ L  S NQ+  SLS     + ++  + +
Sbjct: 66  LSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQI-ASLSGIE-KLVNLRVLYM 122

Query: 132 SINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEIGNLTKLKEIISTITN 190
           S N+++     N  +I   L+   +LE+L L  N L     +         E++  + N
Sbjct: 123 SNNKIT-----NWGEI-DKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPN 175

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 43.5 bits (103), Expect = 8e-05
 Identities = 28/119 (23%), Positives = 51/119 (42%), Gaps = 14/119 (11%)

Query: 226 NMSALKEISLLNNSLSGSLPSRID--LSLPNVETLNLGINSFSGTIPSSITNSSKLSDLE 283
            + A K ++L  N++      +I     + N+  L+LG N     I +    +  L +L 
Sbjct: 46  TLKACKHLALSTNNIE-----KISSLSGMENLRILSLGRNLIK-KIENLDAVADTLEELW 99

Query: 284 LGENLFSGFIPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPL 342
           +  N  +  +   I  L NL    +++N +T        +  L    KL+ L++ GNPL
Sbjct: 100 ISYNQIA-SLSG-IEKLVNLRVLYMSNNKIT----NWGEIDKLAALDKLEDLLLAGNPL 152

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens} Length = 365

 Score = 53.1 bits (127), Expect = 2e-07
 Identities = 17/97 (17%), Positives = 32/97 (32%), Gaps = 14/97 (14%)

Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAH-----------ISDFGIAKLLSGED 727
           +   +E +H      IIH D+KP N +L    +             + D G +  +    
Sbjct: 181 MLYMIEQVH---DCEIIHGDIKPDNFILGNGFLEQDDEDDLSAGLALIDLGQSIDMKLFP 237

Query: 728 QLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
           + +  T    T G+   E  +    + + D       
Sbjct: 238 KGTIFTAKCETSGFQCVEMLSNKPWNYQIDYFGVAAT 274

>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii} Length = 458

 Score = 52.9 bits (127), Expect = 2e-07
 Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 9/79 (11%)

Query: 686 LHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPE 745
           + + HS  I+H DLKP+N L+++D    + DFG+A+ +   +  + Q         M   
Sbjct: 169 VKYVHSAGILHRDLKPANCLVNQDCSVKVCDFGLARTVDYPENGNSQLPISPREDDMNLV 228

Query: 746 YGTKGR---------VSTR 755
                +         V TR
Sbjct: 229 TFPHTKNLKRQLTGHVVTR 247

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A* Length = 289

 Score = 51.9 bits (125), Expect = 3e-07
 Identities = 24/140 (17%), Positives = 47/140 (33%), Gaps = 48/140 (34%)

Query: 651 QQYERALKSFEDECEVRKRIRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDED- 709
            +  R +  F  E E++  +        +   L Y+H   S+ ++H D+KPSN+ +    
Sbjct: 103 SENYRIMSYF-KEAELKDLLLQ------VGRGLRYIH---SMSLVHMDIKPSNIFISRTS 152

Query: 710 ------------------MVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPE------ 745
                             ++  I D G    +S     S Q +      ++A E      
Sbjct: 153 IPNAASEEGDEDDWASNKVMFKIGDLGHVTRIS-----SPQVEE-GDSRFLANEVLQENY 206

Query: 746 -YGTKGRVSTRGDVCSFGII 764
            +  K       D+ +  + 
Sbjct: 207 THLPK------ADIFALALT 220

>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II} Length = 388

 Score = 52.4 bits (126), Expect = 3e-07
 Identities = 16/73 (21%), Positives = 34/73 (46%), Gaps = 3/73 (4%)

Query: 686 LHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPE 745
           + + HS  ++H D+KPSN+LL+ +    ++DFG+++      +++              +
Sbjct: 122 IKYLHSGGLLHRDMKPSNILLNAECHVKVADFGLSRSFVNIRRVTNNIPLSINENTENFD 181

Query: 746 YGTK---GRVSTR 755
                    V+TR
Sbjct: 182 DDQPILTDYVATR 194

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 52.0 bits (124), Expect = 4e-07
 Identities = 21/82 (25%), Positives = 31/82 (37%), Gaps = 4/82 (4%)

Query: 57  LNISSFNLQGTITPQ-LGNLSSLQTLDLSHNKLSGNIPSSIF-NMHTLKLLDFSDNQLFG 114
           L I +      +  + L  L  L+ L +  + L   +    F     L  L+ S N L  
Sbjct: 36  LYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTPRLSRLNLSFNAL-E 93

Query: 115 SLSSFIFNMSSMTTIDLSINRL 136
           SLS       S+  + LS N L
Sbjct: 94  SLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 47.8 bits (113), Expect = 9e-06
 Identities = 21/96 (21%), Positives = 37/96 (38%), Gaps = 5/96 (5%)

Query: 147 IPSTLSKCKQLEELNLGFNNLSGAIPKE-IGNLTKLKEIISTITNSTVCEIPREI-GNLP 204
               L   + L EL +        +    +  L +L+ +  TI  S +  +  +     P
Sbjct: 23  SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNL--TIVKSGLRFVAPDAFHFTP 80

Query: 205 YLARLALATNNLVGVVPVTIFNMSALKEISLLNNSL 240
            L+RL L+ N L   +        +L+E+ L  N L
Sbjct: 81  RLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 46.7 bits (110), Expect = 2e-05
 Identities = 17/100 (17%), Positives = 35/100 (35%), Gaps = 11/100 (11%)

Query: 70  PQLGNLSSLQTLDLSHNKLSGNIPSSIF-NMHTLKLLDFSDNQLFGSLSSFIF-NMSSMT 127
             L    +L  L + + +   ++       +  L+ L    + L   ++   F     ++
Sbjct: 25  HHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGL-RFVAPDAFHFTPRLS 83

Query: 128 TIDLSINRLSGELPANICKIPSTLSKCKQLEELNLGFNNL 167
            ++LS N L          +     +   L+EL L  N L
Sbjct: 84  RLNLSFNALE--------SLSWKTVQGLSLQELVLSGNPL 115

>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A* Length = 299

 Score = 51.5 bits (124), Expect = 4e-07
 Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 6/52 (11%)

Query: 673 RNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLL---DEDMVAHISDFGIAK 721
             ++K I  +++YLH   SI I H D+KP N+L      + +  ++DFG AK
Sbjct: 120 SEIMKSIGEAIQYLH---SINIAHRDVKPENLLYTSKRPNAILKLTDFGFAK 168

>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II} Length = 383

 Score = 51.7 bits (124), Expect = 5e-07
 Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 7/65 (10%)

Query: 682 SLEYLHFGHSIPIIHCDLKPSNVLLD-EDMVAHISDFGIAKLLSGEDQLSKQTQTLATIG 740
           ++ ++H   S+ I H D+KP N+L++ +D    + DFG AK L   +        + +  
Sbjct: 153 AVGFIH---SLGICHRDIKPQNLLVNSKDNTLKLCDFGSAKKLIPSEPS---VAYICSRF 206

Query: 741 YMAPE 745
           Y APE
Sbjct: 207 YRAPE 211

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A Length = 286

 Score = 51.3 bits (123), Expect = 5e-07
 Identities = 18/163 (11%), Positives = 30/163 (18%), Gaps = 70/163 (42%)

Query: 643 EVAVKVFHQQY---ERALKSFEDECEVRKRIRHRNLV----------------------- 676
           +VA+     Q    +  L+          RI    +                        
Sbjct: 58  QVALTFVDPQGVLPDDVLQETLSRTLRLSRIDKPGVARVLDVVHTRAGGLVVAEWIRGGS 117

Query: 677 ---------------KIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAK 721
                          + + S        H   +      PS V +  D        G   
Sbjct: 118 LQEVADTSPSPVGAIRAMQSLAAAADAAHRAGVALSIDHPSRVRVSID--------GDVV 169

Query: 722 LLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
                         LA    M          + + D+   G  
Sbjct: 170 --------------LAYPATMPD-------ANPQDDIRGIGAS 191

>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major} Length = 360

 Score = 51.1 bits (123), Expect = 8e-07
 Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 5/65 (7%)

Query: 682 SLEYLHFGHSIPIIHCDLKPSNVLLD-EDMVAHISDFGIAKLLSGEDQLSKQTQTLATIG 740
           S+  LH   S+ + H D+KP NVL++  D    + DFG AK LS  +        + +  
Sbjct: 141 SIGCLH-LPSVNVCHRDIKPHNVLVNEADGTLKLCDFGSAKKLSPSEPN---VAYICSRY 196

Query: 741 YMAPE 745
           Y APE
Sbjct: 197 YRAPE 201

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 48.5 bits (116), Expect = 8e-07
 Identities = 26/113 (23%), Positives = 47/113 (41%), Gaps = 7/113 (6%)

Query: 328 NCKKLKVLIVTGNPLDGILPKSIGNFSLSLETILMANCSIS--GNIPQVVGNLSNLLVLE 385
               +K L++  +  +    + + +    LE +   N  ++   N+P     L+ L  LE
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLP----KLNKLKKLE 70

Query: 386 LGGNNLTGPIPVTFSQLQTLQAFDLTRNKLAGPIT-DELCHLARLHSLVLQGN 437
           L  N ++G + V   +   L   +L+ NK+    T + L  L  L SL L   
Sbjct: 71  LSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 26/120 (21%), Positives = 48/120 (40%), Gaps = 10/120 (8%)

Query: 275 NSSKLSDLELGENLFS-GFIPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLK 333
             S + +L L  +  + G +         LEF +  +  LTS       +++L    KLK
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTS-------IANLPKLNKLK 67

Query: 334 VLIVTGNPLDGILPKSIGNFSLSLETILMANCSISG-NIPQVVGNLSNLLVLELGGNNLT 392
            L ++ N + G L         +L  + ++   I   +  + +  L NL  L+L    +T
Sbjct: 68  KLELSDNRVSGGLEVLAEKCP-NLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT 126

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} PDB: 2qkr_A* Length = 311

 Score = 49.5 bits (119), Expect = 2e-06
 Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 5/84 (5%)

Query: 683 LEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYM 742
           L  +   H   I+H DLKP N+L++ D    ++DFG+A+       +   T  + T+ Y 
Sbjct: 129 LRGVAHCHQHRILHRDLKPQNLLINSDGALKLADFGLARAFG--IPVRSYTHEVVTLWYR 186

Query: 743 APE--YGTKGRVSTRGDVCSFGII 764
           AP+   G+K + ST  D+ S G I
Sbjct: 187 APDVLMGSK-KYSTSVDIWSIGCI 209

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A Length = 292

 Score = 49.4 bits (119), Expect = 2e-06
 Identities = 26/84 (30%), Positives = 45/84 (53%), Gaps = 5/84 (5%)

Query: 683 LEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYM 742
           L+ L F HS  ++H DLKP N+L++ +    +++FG+A+       +   +  + T+ Y 
Sbjct: 111 LKGLGFCHSRNVLHRDLKPQNLLINRNGELKLANFGLARAFG--IPVRCYSAEVVTLWYR 168

Query: 743 APE--YGTKGRVSTRGDVCSFGII 764
            P+  +G K   ST  D+ S G I
Sbjct: 169 PPDVLFGAK-LYSTSIDMWSAGCI 191

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 49.5 bits (118), Expect = 4e-06
 Identities = 48/348 (13%), Positives = 116/348 (33%), Gaps = 39/348 (11%)

Query: 74  NLSSLQTLDLS--HNKLSGNIPSSIF-NMHTLKLLDFSDNQLFGSLSSFIFNMSSMTTID 130
             +SL +L++S   +++S +    +      LK L  +       L++ +     +  + 
Sbjct: 182 TYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELG 241

Query: 131 LSINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEIGNLTKLKEII---ST 187
                     P     +   LS CK+L  L+  ++ +   +P      ++L  +    +T
Sbjct: 242 TGGYTAEVR-PDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYAT 300

Query: 188 ITNSTVCEIPREIGNLPYLARLALATNNLVGVVPVTIFNMSALKEISLLNNSLSGSLPSR 247
           + +  + ++   +   P L RL +        + V       L+E+ +  +      P+ 
Sbjct: 301 VQSYDLVKL---LCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNV 357

Query: 248 ---------IDLSLPNVETLNLGINSFSG-TIPSSITNSSKLSDLELGENLFSGFIPNTI 297
                    + +  P +E++       +   + +   N   ++   L        I    
Sbjct: 358 ALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLC------IIEPKA 411

Query: 298 GNLRNLEFGNIADNYLTSSTPELSFLS------------SLTNCKKLKVLIVTGNPLDGI 345
            +   LE  +I    +     +L  LS              T  KK+++L V       +
Sbjct: 412 PDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDL 471

Query: 346 LPKSIGNFSLSLETILMANCSISGN-IPQVVGNLSNLLVLELGGNNLT 392
               + +   SL  + + +C      +      L  +  L +   +++
Sbjct: 472 GMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS 519

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} Length = 331

 Score = 48.8 bits (117), Expect = 4e-06
 Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 9/73 (12%)

Query: 683 LEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYM 742
           +  + F HS  IIH D+KP N+L+ +  V  + DFG A+ L+           +AT  Y 
Sbjct: 134 INGIGFCHSHNIIHRDIKPENILVSQSGVVKLCDFGFARTLA--APGEVYDDEVATRWYR 191

Query: 743 APE-------YGT 748
           APE       YG 
Sbjct: 192 APELLVGDVKYGK 204

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 48.2 bits (115), Expect = 4e-06
 Identities = 48/164 (29%), Positives = 80/164 (48%), Gaps = 16/164 (9%)

Query: 79  QTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQLFGSLSSFIFN-MSSMTTIDLSINRLS 137
           + LDL    L+    ++   +  L  L+   NQL  +LS+ +F+ ++ + T+ L+ N+L+
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQL-QTLSAGVFDDLTELGTLGLANNQLA 96

Query: 138 GELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEI-GNLTKLKEIISTITNSTVCEI 196
             LP  +           QL++L LG N L  ++P  +   LTKLKE+   +  + +  I
Sbjct: 97  -SLPLGV------FDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKEL--RLNTNQLQSI 146

Query: 197 PREI-GNLPYLARLALATNNLVGVVPVTIF-NMSALKEISLLNN 238
           P      L  L  L+L+TN L   VP   F  +  L+ I+L  N
Sbjct: 147 PAGAFDKLTNLQTLSLSTNQLQS-VPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 46.6 bits (111), Expect = 1e-05
 Identities = 34/112 (30%), Positives = 54/112 (48%), Gaps = 11/112 (9%)

Query: 75  LSSLQTLDLSHNKLSGNIPSSIFNMHT-LKLLDFSDNQLFGSLSSFIF-NMSSMTTIDLS 132
           L+ L TL L++N+L+ ++P  +F+  T L  L    NQL  SL S +F  ++ +  + L+
Sbjct: 82  LTELGTLGLANNQLA-SLPLGVFDHLTQLDKLYLGGNQL-KSLPSGVFDRLTKLKELRLN 139

Query: 133 INRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEIGNLTKLKEI 184
            N+L   +PA          K   L+ L+L  N L          L KL+ I
Sbjct: 140 TNQLQ-SIPAGA------FDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTI 184

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 42.0 bits (99), Expect = 4e-04
 Identities = 34/118 (28%), Positives = 45/118 (38%), Gaps = 14/118 (11%)

Query: 378 LSNLLVLELGGNNLTGPIPVTFSQLQTLQAFDLTRNKL----AGPITDELCHLARLHSLV 433
           L+ L  L L  N L       F  L  L    L  N+L    +G + D L  L  L    
Sbjct: 82  LTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSG-VFDRLTKLKELR--- 137

Query: 434 LQGNKFSGSIPSCLG---NLTSVRVLYLGLNIFTSVLSSTIWNLKDILFIDVSSNFLD 488
           L  N+   SIP+  G    LT+++ L L  N   SV       L  +  I +  N  D
Sbjct: 138 LNTNQLQ-SIPA--GAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD 192

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 41.2 bits (97), Expect = 7e-04
 Identities = 38/154 (24%), Positives = 65/154 (42%), Gaps = 9/154 (5%)

Query: 208 RLALATNNLVGVVPVTIFNMSALKEISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSG 267
           +L L +  L  +   T   ++ L  ++L  N L  +L + +   L  + TL L  N  + 
Sbjct: 39  KLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLA- 96

Query: 268 TIPSSITNS-SKLSDLELGENLFSGFIPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSL 326
           ++P  + +  ++L  L LG N            L  L+   +  N L  S P  +F   L
Sbjct: 97  SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAF-DKL 154

Query: 327 TNCKKLKVLIVTGNPLDGILPKSIGNFSLSLETI 360
           TN   L+ L ++ N L  + P    +    L+TI
Sbjct: 155 TN---LQTLSLSTNQLQSV-PHGAFDRLGKLQTI 184

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens} Length = 311

 Score = 48.3 bits (116), Expect = 4e-06
 Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 9/73 (12%)

Query: 683 LEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYM 742
           L+ ++F H    IH D+KP N+L+ +  V  + DFG A+LL+G          +AT  Y 
Sbjct: 112 LQAVNFCHKHNCIHRDVKPENILITKHSVIKLCDFGFARLLTGPSD--YYDDEVATRWYR 169

Query: 743 APE-------YGT 748
           +PE       YG 
Sbjct: 170 SPELLVGDTQYGP 182

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A Length = 288

 Score = 48.3 bits (116), Expect = 4e-06
 Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 5/84 (5%)

Query: 683 LEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYM 742
           L  + + H   ++H DLKP N+L++ +    I+DFG+A+       + K T  + T+ Y 
Sbjct: 110 LNGIAYCHDRRVLHRDLKPQNLLINREGELKIADFGLARAFG--IPVRKYTHEIVTLWYR 167

Query: 743 APE--YGTKGRVSTRGDVCSFGII 764
           AP+   G+K + ST  D+ S G I
Sbjct: 168 APDVLMGSK-KYSTTIDIWSVGCI 190

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 48.6 bits (116), Expect = 4e-06
 Identities = 31/206 (15%), Positives = 64/206 (31%), Gaps = 21/206 (10%)

Query: 74  NLSSLQTLDLSHNKLSGN----IPSSIFNMHTLKLLDFSDNQL----FGSLSSFIFNMSS 125
           +   + TL LS+N L+      +   +    ++  L      L       L++ +     
Sbjct: 153 DQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQ 212

Query: 126 MTTIDLSINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEIGNLTKLKEII 185
           +  ++++ N            +     +   LE L+L FN LS    + + +L    E  
Sbjct: 213 LQELNVAYNGAG---DTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGG 269

Query: 186 STIT--NSTVCEIPREIGNLPYLARLALATNNLVGVVPVTIFNMSALKEISLLNNSLSGS 243
           + +    +    +        +   L+    NL       +     L    L ++  +  
Sbjct: 270 ARVVVSLTEGTAVSEY-----WSVILSEVQRNLNSWDRARVQRHLELLLRDLEDSRGATL 324

Query: 244 LPSRIDLSL---PNVETLNLGINSFS 266
            P R    L     V  L   + S  
Sbjct: 325 NPWRKAQLLRVEGEVRALLEQLGSSG 350

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 42.8 bits (101), Expect = 4e-04
 Identities = 18/101 (17%), Positives = 37/101 (36%), Gaps = 9/101 (8%)

Query: 74  NLSSLQTLDLSHNKLSGNIPSSIFNM-HTLKLLDFSDNQL----FGSLSSFI-FNMSSMT 127
              +L  ++L+  +L      ++  +    + L    N L       L   +  +   +T
Sbjct: 99  GRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQIT 158

Query: 128 TIDLSINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLS 168
           T+ LS N L+    A +  +   L+    +  L+L    L 
Sbjct: 159 TLRLSNNPLT---AAGVAVLMEGLAGNTSVTHLSLLHTGLG 196

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 42.4 bits (100), Expect = 4e-04
 Identities = 21/105 (20%), Positives = 37/105 (35%), Gaps = 12/105 (11%)

Query: 75  LSSLQTLDLSHNKLSGNIPSSI-----FNMHTLKLLDFSDNQL----FGSLSSFIFNMSS 125
               + L L  N L       +      +   +  L  S+N L       L   +   +S
Sbjct: 125 FLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTS 184

Query: 126 MTTIDLSINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGA 170
           +T + L    L  E    +    + L + +QL+ELN+ +N     
Sbjct: 185 VTHLSLLHTGLGDEGLELLA---AQLDRNRQLQELNVAYNGAGDT 226

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A* Length = 317

 Score = 48.4 bits (116), Expect = 5e-06
 Identities = 34/116 (29%), Positives = 53/116 (45%), Gaps = 14/116 (12%)

Query: 657 LKSFEDECEVRKRIRH--RNLVKIIS----SSLEYLHFGHSIPIIHCDLKPSNVLLDEDM 710
           LK + D   V    R    NLVK         L + H      I+H DLKP N+L+++  
Sbjct: 89  LKKYMDSRTVGNTPRGLELNLVKYFQWQLLQGLAFCHENK---ILHRDLKPQNLLINKRG 145

Query: 711 VAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPE--YGTKGRVSTRGDVCSFGII 764
              + DFG+A+       ++  +  + T+ Y AP+   G++   ST  D+ S G I
Sbjct: 146 QLKLGDFGLARAFG--IPVNTFSSEVVTLWYRAPDVLMGSR-TYSTSIDIWSCGCI 198

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ... Length = 420

 Score = 48.5 bits (116), Expect = 6e-06
 Identities = 26/65 (40%), Positives = 33/65 (50%), Gaps = 7/65 (10%)

Query: 682 SLEYLHFGHSIPIIHCDLKPSNVLLDEDM-VAHISDFGIAKLLSGEDQLSKQTQTLATIG 740
           SL Y+H   S  I H D+KP N+LLD D  V  + DFG AK L   +        + +  
Sbjct: 168 SLAYIH---SFGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGEPN---VSYICSRY 221

Query: 741 YMAPE 745
           Y APE
Sbjct: 222 YRAPE 226

>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens} Length = 324

 Score = 48.0 bits (115), Expect = 7e-06
 Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 5/84 (5%)

Query: 683 LEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYM 742
           L  L + H   ++H DLKP N+L++E     ++DFG+A+  S           + T+ Y 
Sbjct: 110 LRGLAYCHRQKVLHRDLKPQNLLINERGELKLADFGLARAKS--IPTKTYDNEVVTLWYR 167

Query: 743 APE--YGTKGRVSTRGDVCSFGII 764
            P+   G+    ST+ D+   G I
Sbjct: 168 PPDILLGST-DYSTQIDMWGVGCI 190

>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B Length = 326

 Score = 48.0 bits (115), Expect = 7e-06
 Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 9/72 (12%)

Query: 683 LEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYM 742
           L  L F HS  ++H DLKP N+L+       ++DFG+A++ S +  L   T  + T+ Y 
Sbjct: 130 LRGLDFLHSHRVVHRDLKPQNILVTSSGQIKLADFGLARIYSFQMAL---TSVVVTLWYR 186

Query: 743 APE------YGT 748
           APE      Y T
Sbjct: 187 APEVLLQSSYAT 198

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* Length = 351

 Score = 47.6 bits (114), Expect = 9e-06
 Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 9/75 (12%)

Query: 683 LEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLS--GEDQLSKQTQTLATIG 740
           L  L++ H   I+H D+K +NVL+  D V  ++DFG+A+  S     Q ++ T  + T+ 
Sbjct: 134 LNGLYYIHRNKILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNSQPNRYTNRVVTLW 193

Query: 741 YMAPE-------YGT 748
           Y  PE       YG 
Sbjct: 194 YRPPELLLGERDYGP 208

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} Length = 308

 Score = 47.2 bits (113), Expect = 1e-05
 Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 9/72 (12%)

Query: 683 LEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYM 742
           L  L F H+  I+H DLKP N+L+       ++DFG+A++ S +  L   T  + T+ Y 
Sbjct: 130 LRGLDFLHANCIVHRDLKPENILVTSGGTVKLADFGLARIYSYQMAL---TPVVVTLWYR 186

Query: 743 APE------YGT 748
           APE      Y T
Sbjct: 187 APEVLLQSTYAT 198

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 46.9 bits (112), Expect = 1e-05
 Identities = 47/169 (27%), Positives = 81/169 (47%), Gaps = 40/169 (23%)

Query: 74  NLSSLQTLDLSHNKLSGNIPSSIFNMHT-LKLLDFSDNQLFGSLSSFIFN-MSSMTTIDL 131
            L++L  L L+ N+L  ++P+ +F+  T LK L   +NQL  SL   +F+ ++++T ++L
Sbjct: 83  ELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQL-QSLPDGVFDKLTNLTYLNL 140

Query: 132 SINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEI-GNLTKLKEIISTITN 190
           + N+L   LP  +        K   L EL+L +N L  ++P+ +   LT+LK        
Sbjct: 141 AHNQLQ-SLPKGV------FDKLTNLTELDLSYNQLQ-SLPEGVFDKLTQLK-------- 184

Query: 191 STVCEIPREIGNLPYLARLALATNNLVGVVPVTIF-NMSALKEISLLNN 238
                             L L  N L   VP  +F  +++L+ I L +N
Sbjct: 185 -----------------DLRLYQNQLKS-VPDGVFDRLTSLQYIWLHDN 215

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 43.5 bits (103), Expect = 2e-04
 Identities = 56/269 (20%), Positives = 97/269 (36%), Gaps = 55/269 (20%)

Query: 79  QTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQLFGSLSSFIFNMSSMTTIDLSINRLSG 138
           +T+ +S        P   F        +     +     +    ++S+  I  + + +  
Sbjct: 1   ETITVSTPIKQ-IFPDDAFA--ETIKANLKKKSV-TDAVTQN-ELNSIDQIIANNSDIK- 54

Query: 139 ELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEIGNLTKLKEIISTITNSTVCEIPR 198
            +      I         +  L LG N L      +I  L +L                 
Sbjct: 55  SVQG----IQYL----PNVRYLALGGNKL-----HDISALKELTN--------------- 86

Query: 199 EIGNLPYLARLALATNNLVGVVPVTIFN-MSALKEISLLNNSLSGSLPSRIDLSLPNVET 257
                  L  L L  N L  + P  +F+ ++ LKE+ L+ N L  SLP  +   L N+  
Sbjct: 87  -------LTYLILTGNQLQSL-PNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTY 137

Query: 258 LNLGINSFSGTIPSSITNS-SKLSDLELGEN-LFSGFIPNTI-GNLRNLEFGNIADNYLT 314
           LNL  N    ++P  + +  + L++L+L  N L S  +P  +   L  L+   +  N L 
Sbjct: 138 LNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQS--LPEGVFDKLTQLKDLRLYQNQLK 194

Query: 315 SSTPELSFLSSLTNCKKLKVLIVTGNPLD 343
            S P+  F         L+ + +  NP D
Sbjct: 195 -SVPDGVF----DRLTSLQYIWLHDNPWD 218

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens} Length = 312

 Score = 46.9 bits (112), Expect = 1e-05
 Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 9/88 (10%)

Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDM-VAHISDFGIAKLLSGEDQLSKQTQTLA 737
           + +++++ H   S  ++H D+K  N+L+D     A + DFG   LL         T    
Sbjct: 148 VVAAIQHCH---SRGVVHRDIKDENILIDLRRGCAKLIDFGSGALLHD----EPYTDFDG 200

Query: 738 TIGYMAPEY-GTKGRVSTRGDVCSFGII 764
           T  Y  PE+       +    V S GI+
Sbjct: 201 TRVYSPPEWISRHQYHALPATVWSLGIL 228

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 46.2 bits (110), Expect = 1e-05
 Identities = 33/118 (27%), Positives = 45/118 (38%), Gaps = 9/118 (7%)

Query: 372 PQVVGNLSNLLVLELGGNNLTGPIPVTFSQLQTLQAFDLTRNKL----AGPITDELCHLA 427
           P V  +L NL  L LG N L       F  L  L   DL  N+L    +  + D L HL 
Sbjct: 57  PGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSA-VFDRLVHLK 115

Query: 428 RLHSLVLQGNKFSGSIPSCLGNLTSVRVLYLGLNIFTSVLSSTIWNLKDILFIDVSSN 485
            L    +  NK +  +P  +  LT +  L L  N   S+       L  +    +  N
Sbjct: 116 ELF---MCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 45.1 bits (107), Expect = 3e-05
 Identities = 42/163 (25%), Positives = 68/163 (41%), Gaps = 39/163 (23%)

Query: 79  QTLDLSHNKLSGNIPSSIFNMHT-LKLLDFSDNQLFGSLSSFIFN-MSSMTTIDLSINRL 136
           Q L L  N+++  +   +F+    LK L    NQL G+L   +F+ ++ +T +DL  N+L
Sbjct: 43  QILYLHDNQIT-KLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQL 100

Query: 137 SGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEIGNLTKLKEIISTITNSTVCEI 196
           +  LP+ +        +   L+EL +  N L+  +P+ I  LT L               
Sbjct: 101 T-VLPSAV------FDRLVHLKELFMCCNKLT-ELPRGIERLTHLT-------------- 138

Query: 197 PREIGNLPYLARLALATNNLVGVVPVTIF-NMSALKEISLLNN 238
                       LAL  N L   +P   F  +S+L    L  N
Sbjct: 139 -----------HLALDQNQLKS-IPHGAFDRLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 43.9 bits (104), Expect = 7e-05
 Identities = 28/113 (24%), Positives = 49/113 (43%), Gaps = 12/113 (10%)

Query: 74  NLSSLQTLDLSHNKLSGNIPSSIFNMHT-LKLLDFSDNQLFGSLSSFIFN-MSSMTTIDL 131
           +L +L+ L L  N+L   +P  +F+  T L +LD   NQL   L S +F+ +  +  + +
Sbjct: 62  SLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTNQL-TVLPSAVFDRLVHLKELFM 119

Query: 132 SINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEIGNLTKLKEI 184
             N+L+        ++P  + +   L  L L  N L          L+ L   
Sbjct: 120 CCNKLT--------ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHA 164

>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7 Length = 346

 Score = 46.8 bits (112), Expect = 1e-05
 Identities = 30/84 (35%), Positives = 44/84 (52%), Gaps = 5/84 (5%)

Query: 683 LEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYM 742
           L+ L + H   I+H DLKP+N+LLDE+ V  ++DFG+AK           T  + T  Y 
Sbjct: 122 LQGLEYLHQHWILHRDLKPNNLLLDENGVLKLADFGLAKSFG--SPNRAYTHQVVTRWYR 179

Query: 743 APE--YGTKGRVSTRGDVCSFGII 764
           APE  +G +       D+ + G I
Sbjct: 180 APELLFGAR-MYGVGVDMWAVGCI 202

>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A Length = 373

 Score = 47.0 bits (112), Expect = 2e-05
 Identities = 31/120 (25%), Positives = 46/120 (38%), Gaps = 33/120 (27%)

Query: 665 EVRKRIRHR----NLVKIIS----SSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAH--- 713
            + K+  HR      VK IS      L+Y+H    I  IH D+KP NVL++         
Sbjct: 118 ALIKKYEHRGIPLIYVKQISKQLLLGLDYMHRRCGI--IHTDIKPENVLMEIVDSPENLI 175

Query: 714 ---ISDFGIAKLLSGEDQLSKQTQTLATIGYMAPE------YGTKGRVSTRGDVCSFGII 764
              I+D G A     ++  +   QT     Y +PE      +G         D+ S   +
Sbjct: 176 QIKIADLGNA--CWYDEHYTNSIQTRE---YRSPEVLLGAPWGCG------ADIWSTACL 224

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} Length = 405

 Score = 47.1 bits (112), Expect = 2e-05
 Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 12/78 (15%)

Query: 683 LEYLHFGHSIPIIHCDLKPSNVLLDEDMVAH----ISDFGIAKLLSGEDQ-LSKQTQTLA 737
           L+ +H+ H+  ++H DLKP+N+L+  +        I+D G A+L +   + L+     + 
Sbjct: 138 LDGIHYLHANWVLHRDLKPANILVMGEGPERGRVKIADMGFARLFNSPLKPLADLDPVVV 197

Query: 738 TIGYMAPE-------YGT 748
           T  Y APE       Y  
Sbjct: 198 TFWYRAPELLLGARHYTK 215

>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3mb7_A* 3mb6_A* 3owj_A* 3owk_A* ... Length = 330

 Score = 46.5 bits (111), Expect = 2e-05
 Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 4/64 (6%)

Query: 683 LEYLHFGHSIPIIHCDLKPSNVLLD-EDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGY 741
           L+ L + HS+ I+H D+KP NV++D E     + D+G+A+      +       +A+  +
Sbjct: 140 LKALDYCHSMGIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPGQEY---NVRVASRYF 196

Query: 742 MAPE 745
             PE
Sbjct: 197 KGPE 200

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 44.3 bits (105), Expect = 3e-05
 Identities = 26/113 (23%), Positives = 46/113 (40%), Gaps = 7/113 (6%)

Query: 328 NCKKLKVLIVTGNPLDGILPKSIGNFSLSLETILMANCSIS--GNIPQVVGNLSNLLVLE 385
               ++ L++     +    + +    ++LE + + N  +    N+P     L  L  LE
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLP----KLPKLKKLE 77

Query: 386 LGGNNLTGPIPVTFSQLQTLQAFDLTRNKLAGPIT-DELCHLARLHSLVLQGN 437
           L  N + G + +   +L  L   +L+ NKL    T + L  L  L SL L   
Sbjct: 78  LSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 40.5 bits (95), Expect = 5e-04
 Identities = 27/143 (18%), Positives = 50/143 (34%), Gaps = 35/143 (24%)

Query: 122 NMSSMTTIDLSINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEIGNLTKL 181
             +++  + L   +       N  KI    ++   LE L+L    L       + NL KL
Sbjct: 22  TPAAVRELVLDNCKS------NDGKIEGLTAEFVNLEFLSLINVGL-----ISVSNLPKL 70

Query: 182 KEIISTITNSTVCEIPREIGNLPYLARLALATNNLVGVVPVTIFNMSALKEISLLNNSLS 241
                                 P L +L L+ N + G + +    +  L  ++L  N L 
Sbjct: 71  ----------------------PKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLK 108

Query: 242 GSLPSRIDLS-LPNVETLNLGIN 263
             + +   L  L  +++L+L   
Sbjct: 109 -DISTLEPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 40.1 bits (94), Expect = 7e-04
 Identities = 30/151 (19%), Positives = 51/151 (33%), Gaps = 25/151 (16%)

Query: 275 NSSKLSDLEL-GENLFSGFIPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLK 333
             + + +L L       G I        NLEF ++ +  L S       +S+L    KLK
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS-------VSNLPKLPKLK 74

Query: 334 VLIVTGNPLDGILPKSIGNFSLSLETILMANCSISG-NIPQVVGNLSNLLVLELGGNNLT 392
            L ++ N + G L         +L  + ++   +   +  + +  L  L  L+L      
Sbjct: 75  KLELSENRIFGGLDMLAEKLP-NLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC--- 130

Query: 393 GPIPVT---------FSQLQTLQAFDLTRNK 414
               VT         F  L  L   D    +
Sbjct: 131 ---EVTNLNDYRESVFKLLPQLTYLDGYDRE 158

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ... Length = 320

 Score = 45.8 bits (109), Expect = 3e-05
 Identities = 21/93 (22%), Positives = 37/93 (39%), Gaps = 19/93 (20%)

Query: 679 ISSSLEYLHFGHSIPIIHCDLKPSNVLLDED-MVAHISDFGIAKLLSGEDQLSKQTQTLA 737
           +  ++ + H   +  ++H D+K  N+L+D +     + DFG   LL      +  T    
Sbjct: 158 VLEAVRHCH---NCGVLHRDIKDENILIDLNRGELKLIDFGSGALLKD----TVYTDFDG 210

Query: 738 TIGYMAPEYGTKGRVSTRG------DVCSFGII 764
           T  Y  PE+     +           V S GI+
Sbjct: 211 TRVYSPPEW-----IRYHRYHGRSAAVWSLGIL 238

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis} Length = 394

 Score = 45.4 bits (108), Expect = 6e-05
 Identities = 20/40 (50%), Positives = 25/40 (62%), Gaps = 1/40 (2%)

Query: 686 LHFGHSIPIIHCDLKPSNVLLDEDM-VAHISDFGIAKLLS 724
           L + HSI I H D+KP N+LLD    V  + DFG AK+L 
Sbjct: 154 LAYIHSIGICHRDIKPQNLLLDPPSGVLKLIDFGSAKILI 193

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A* Length = 329

 Score = 44.9 bits (107), Expect = 7e-05
 Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 10/89 (11%)

Query: 683 LEYLHFGHSIPIIHCDLKPSNVLLDEDMVAH-----ISDFGIAKLLSGEDQLSKQTQTLA 737
           +  ++F HS   +H DLKP N+LL     +      I DFG+A+       + + T  + 
Sbjct: 142 INGVNFCHSRRCLHRDLKPQNLLLSVSDASETPVLKIGDFGLARAFG--IPIRQFTHEII 199

Query: 738 TIGYMAPE--YGTKGRVSTRGDVCSFGII 764
           T+ Y  PE   G++   ST  D+ S   I
Sbjct: 200 TLWYRPPEILLGSR-HYSTSVDIWSIACI 227

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 18/63 (28%), Positives = 35/63 (55%), Gaps = 4/63 (6%)

Query: 74  NLSSLQTLDLSHNKLSGNIPSSIFN-MHTLKLLDFSDNQLFGSLSSFIF-NMSSMTTIDL 131
           N++ L TL LS+N+L   IP   F+ + +L+LL    N +   +    F ++S+++ + +
Sbjct: 76  NMTQLLTLILSYNRLR-CIPPRTFDGLKSLRLLSLHGNDI-SVVPEGAFNDLSALSHLAI 133

Query: 132 SIN 134
             N
Sbjct: 134 GAN 136

>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens} Length = 345

 Score = 43.9 bits (104), Expect = 1e-04
 Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 7/44 (15%)

Query: 681 SSLEYLHFGHSIPIIHCDLKPSNVLL---DEDMVAHISDFGIAK 721
             LEY+H       +H D+K +N+LL   + D V +++D+G++ 
Sbjct: 162 DVLEYIH---ENEYVHGDIKAANLLLGYKNPDQV-YLADYGLSY 201

>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* Length = 429

 Score = 44.3 bits (105), Expect = 1e-04
 Identities = 21/48 (43%), Positives = 27/48 (56%), Gaps = 3/48 (6%)

Query: 674 NLVKIISSS-LEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHIS--DFG 718
            LV+  + S L+ L   H   IIHCDLKP N+LL +   + I   DFG
Sbjct: 200 PLVRKFAHSILQCLDALHKNRIIHCDLKPENILLKQQGRSGIKVIDFG 247

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A Length = 267

 Score = 43.4 bits (102), Expect = 1e-04
 Identities = 33/192 (17%), Positives = 65/192 (33%), Gaps = 18/192 (9%)

Query: 1   MLLKSIISQHQQALLALKAHISYDHTNLFARNWTSSTSVCIWIGITCDVNSHRVIGLNIS 60
            LL  I S+       ++ H        F  + ++++++        D  + R+  +  S
Sbjct: 39  WLLSMIQSKCSVPFTPIEFHYENTRAQFFVEDASTASALKAVNYKILDRENRRISIIINS 98

Query: 61  SFNLQGTITPQLGNLSSLQTLDLSHN--------KLSGNIPSSIFNMHTLKLLDFSDNQL 112
           S      +            L +S           L G           + ++    + +
Sbjct: 99  SAPPHTILNELKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLNRRSCM 158

Query: 113 FGSLSSFIFNMSSMTTIDLSINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIP 172
             +L     N+  + +++LS NRL       +  + S + K   L+ LNL  N L     
Sbjct: 159 AATLRIIEENIPELLSLNLSNNRLY-----RLDDMSSIVQKAPNLKILNLSGNEL----- 208

Query: 173 KEIGNLTKLKEI 184
           K    L K+K +
Sbjct: 209 KSERELDKIKGL 220

>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A Length = 364

 Score = 43.6 bits (103), Expect = 2e-04
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 7/44 (15%)

Query: 681 SSLEYLHFGHSIPIIHCDLKPSNVLL---DEDMVAHISDFGIAK 721
             LEY+H       +H D+K SN+LL   + D V ++ D+G+A 
Sbjct: 163 DILEYIH---EHEYVHGDIKASNLLLNYKNPDQV-YLVDYGLAY 202

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 43.4 bits (101), Expect = 2e-04
 Identities = 26/156 (16%), Positives = 55/156 (35%), Gaps = 18/156 (11%)

Query: 35  SSTSVCIWIGITCDVNSH-RVIGLNISSFNLQGTITPQLG--NLSSLQTLDL---SHNKL 88
           ++  +     ++        +  L I S  L  ++   +   +L +L+ L L     +  
Sbjct: 175 NNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYG 234

Query: 89  SGNIPSSIF------NMHTLKLLDFSDNQLFGSLSSFIFN---MSSMTTIDLSINRLSGE 139
                +             LK L   D +    +         +  + T+D+S   L+ E
Sbjct: 235 FDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDE 294

Query: 140 LPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEI 175
               +      + K K L+ +N+ +N LS  + KE+
Sbjct: 295 GARLLLD---HVDKIKHLKFINMKYNYLSDEMKKEL 327

>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens} Length = 352

 Score = 43.6 bits (103), Expect = 2e-04
 Identities = 10/44 (22%), Positives = 21/44 (47%), Gaps = 7/44 (15%)

Query: 681 SSLEYLHFGHSIPIIHCDLKPSNVLL---DEDMVAHISDFGIAK 721
            +LE+LH       +H ++   N+ +   D+  V  ++ +G A 
Sbjct: 170 DALEFLH---ENEYVHGNVTAENIFVDPEDQSQV-TLAGYGFAF 209

>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A* Length = 382

 Score = 42.4 bits (100), Expect = 4e-04
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 3/50 (6%)

Query: 673 RNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHIS--DFGIA 720
           R   + + ++L +L     + IIHCDLKP N+LL     + I   DFG +
Sbjct: 160 RKFAQQMCTALLFLA-TPELSIIHCDLKPENILLCNPKRSAIKIVDFGSS 208

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 41.1 bits (97), Expect = 4e-04
 Identities = 20/63 (31%), Positives = 36/63 (57%), Gaps = 4/63 (6%)

Query: 74  NLSSLQTLDLSHNKLSGNIPSSIFN-MHTLKLLDFSDNQLFGSLSSFIF-NMSSMTTIDL 131
             S +Q L L  NK+   I + +F  +H LK L+  DNQ+   +    F +++S+T+++L
Sbjct: 76  GASHIQELQLGENKIK-EISNKMFLGLHQLKTLNLYDNQI-SCVMPGSFEHLNSLTSLNL 133

Query: 132 SIN 134
           + N
Sbjct: 134 ASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 40.8 bits (96), Expect = 5e-04
 Identities = 24/109 (22%), Positives = 40/109 (36%), Gaps = 12/109 (11%)

Query: 79  QTLDLSHNKLSGNIPSSIFNMHT-LKLLDFSDNQLFGSLSSFIF-NMSSMTTIDLSINRL 136
             L L+ N+L       +F     L  L+   NQL   +    F   S +  + L  N++
Sbjct: 32  TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQL-TGIEPNAFEGASHIQELQLGENKI 90

Query: 137 SGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEI-GNLTKLKEI 184
             E+   +           QL+ LNL  N +S  +      +L  L  +
Sbjct: 91  K-EISNKM------FLGLHQLKTLNLYDNQIS-CVMPGSFEHLNSLTSL 131

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 42.6 bits (100), Expect = 5e-04
 Identities = 58/448 (12%), Positives = 122/448 (27%), Gaps = 73/448 (16%)

Query: 52  HRVIGLNISSFNLQGTITPQLGNLSS----LQTLDLSHNKLSGNIPSSIFNMHTLKLLDF 107
            ++         +    T     LS     L++L L               M  L   ++
Sbjct: 45  FKIDSETREHVTMALCYTATPDRLSRRFPNLRSLKLKG--------KPRAAMFNLIPENW 96

Query: 108 SDNQLFGSLSSFIFNMSSMTTIDLSINRLSGELPANICKIPSTLSKCKQLEELNL-GFNN 166
                   ++    N+  + ++      +S      + K     ++   LE L L   + 
Sbjct: 97  GGYVTPW-VTEISNNLRQLKSVHFRRMIVSDLDLDRLAK-----ARADDLETLKLDKCSG 150

Query: 167 LSGAIPKEIG-NLTKLKEI------ISTITNSTVCEIPREIGNLPYLARLALATNNLVGV 219
            +      I  +  K+K +       S      + E+ +   +   L  L         +
Sbjct: 151 FTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ---HNTSLEVLNFYMTEFAKI 207

Query: 220 VPVTIF----NMSALKEISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSITN 275
            P  +     N  +L  + +               +  N+E    G  +    +P    N
Sbjct: 208 SPKDLETIARNCRSLVSVKV--GDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMN 265

Query: 276 SSKLSDLEL--GENLFSGFIPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLK 333
                 L       +    +P        +   ++    L +        + +  C  L+
Sbjct: 266 LVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETE----DHCTLIQKCPNLE 321

Query: 334 VLIVTGNPLDGILPKSIGNFSLSLETILMANCSISGNIPQVVGNLS------------NL 381
           VL       D  L + +  +   L+ + +   +    +    G +S             L
Sbjct: 322 VLETRNVIGDRGL-EVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQEL 380

Query: 382 LVLELGGNNLTGPIPVTFSQ-LQTLQAFDLTRNKLAGPITDE---------LCHLARLHS 431
             + +  +++T     +    L+ L  F L        ITD          L    +L  
Sbjct: 381 EYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRR 440

Query: 432 LVLQGNKFSGSIPSCLGNLTSVRVLYLG 459
                           G LT + + Y+G
Sbjct: 441 FAFY---------LRQGGLTDLGLSYIG 459

>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7} Length = 360

 Score = 41.9 bits (99), Expect = 7e-04
 Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 1/37 (2%)

Query: 674 NLVKIISSS-LEYLHFGHSIPIIHCDLKPSNVLLDED 709
             +K+     L+ L++   + + H DLKP N+LLD+ 
Sbjct: 137 EDIKLYCIEILKALNYLRKMSLTHTDLKPENILLDDP 173

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 40.4 bits (95), Expect = 9e-04
 Identities = 45/166 (27%), Positives = 69/166 (41%), Gaps = 38/166 (22%)

Query: 76  SSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQLFGSLSSFIFN-MSSMTTIDLSIN 134
           +    LDL  N L          + +L  L    N+L  SL + +FN ++S+T ++LS N
Sbjct: 28  AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKL-QSLPNGVFNKLTSLTYLNLSTN 86

Query: 135 RLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEI-GNLTKLKEIISTITNSTV 193
           +L   LP  +        K  QL+EL L  N L  ++P  +   LT+LK           
Sbjct: 87  QLQ-SLPNGV------FDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLK----------- 127

Query: 194 CEIPREIGNLPYLARLALATNNLVGVVPVTIF-NMSALKEISLLNN 238
                          L L  N L   VP  +F  +++L+ I L +N
Sbjct: 128 --------------DLRLYQNQLKS-VPDGVFDRLTSLQYIWLHDN 158

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	823
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	100.0
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	100.0
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	100.0
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	100.0
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	100.0
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	100.0
4aw0_A	311	HPDK1, 3-phosphoinositide-dependent protein kinase	99.97
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.97
3omv_A	307	RAF proto-oncogene serine/threonine-protein kinas;	99.97
4fih_A	346	Serine/threonine-protein kinase PAK 4; kinase doma	99.97
4asz_A	299	BDNF/NT-3 growth factors receptor; transferase, TR	99.97
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.97
4b9d_A	350	Serine/threonine-protein kinase NEK1; transferase,	99.97
4aoj_A	329	High affinity nerve growth factor receptor; transf	99.97
3hyh_A	275	Carbon catabolite-derepressing protein kinase; kin	99.97
4fie_A	423	Serine/threonine-protein kinase PAK 4; kinase doma	99.97
3fpq_A	290	Serine/threonine-protein kinase WNK1; protein seri	99.97
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.97
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.97
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	99.97
4gt4_A	308	Tyrosine-protein kinase transmembrane receptor RO;	99.97
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.97
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.97
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.96
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	99.96
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.96
4ase_A	353	Vascular endothelial growth factor receptor 2; tra	99.96
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.96
3ubd_A	304	Ribosomal protein S6 kinase alpha-3; kinase-inhibi	99.96
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.96
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.96
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.96
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.96
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.96
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.96
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.96
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.96
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.96
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.96
4b99_A	398	Mitogen-activated protein kinase 7; transferase, i	99.95
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.95
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.95
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.95
3hmm_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	99.95
3v5w_A	689	G-protein coupled receptor kinase 2; inhibitor com	99.94
4f9c_A	361	Cell division cycle 7-related protein kinase; Ser/	99.94
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.94
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.94
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	99.94
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.93
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.93
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.93
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.93
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.92
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	99.92
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.91
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	99.91
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.91
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.91
1o6l_A	337	RAC-beta serine/threonine protein kinase; protein	99.91
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.91
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	99.91
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.91
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.91
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	99.91
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	99.91
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	99.91
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	99.91
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.91
3v8s_A	410	RHO-associated protein kinase 1; dimerization, myo	99.91
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	99.9
2vd5_A	412	DMPK protein; serine/threonine-protein kinase, kin	99.9
3ttj_A	464	Mitogen-activated protein kinase 10; JNK3, protein	99.9
4fr4_A	384	YANK1, serine/threonine-protein kinase 32A; struct	99.9
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	99.9
3txo_A	353	PKC-L, NPKC-ETA, protein kinase C ETA type; phosph	99.9
3rp9_A	458	Mitogen-activated protein kinase; structural genom	99.9
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.9
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.9
1fot_A	318	TPK1 delta, CAMP-dependent protein kinase type 1;	99.9
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	99.9
3zgw_A	347	Maternal embryonic leucine zipper kinase; transfer	99.9
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	99.9
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	99.9
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.9
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	99.9
4dc2_A	396	Protein kinase C IOTA type; kinase, substrate, cel	99.9
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	99.9
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	99.9
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	99.9
3a8x_A	345	Protein kinase C IOTA type; transferase; HET: TPO;	99.9
3oz6_A	388	Mitogen-activated protein kinase 1, serine/threon	99.89
1xjd_A	345	Protein kinase C, theta type; PKC-theta, ATP, AMP,	99.89
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.89
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	99.89
1rdq_E	350	PKA C-alpha, CAMP-dependent protein kinase, alpha-	99.89
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	99.89
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	99.89
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	99.89
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	99.89
3soc_A	322	Activin receptor type-2A; structural genomics cons	99.89
2i0e_A	353	Protein kinase C-beta II; serine/threonine protein	99.89
3o0g_A	292	Cell division protein kinase 5; kinase activator c	99.89
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	99.89
3niz_A	311	Rhodanese family protein; structural genomics, str	99.89
3llt_A	360	Serine/threonine kinase-1, pflammer; lammer kinase	99.89
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.89
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	99.89
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.89
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.89
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	99.89
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	99.89
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	99.89
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	99.89
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	99.89
3ork_A	311	Serine/threonine protein kinase; structural genomi	99.89
3n9x_A	432	Phosphotransferase; malaria kinase, structural gen	99.89
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	99.89
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	99.89
2r5t_A	373	Serine/threonine-protein kinase SGK1; AGC protein	99.89
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	99.89
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	99.88
3a62_A	327	Ribosomal protein S6 kinase beta-1; kinase domain,	99.88
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	99.88
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	99.88
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	99.88
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	99.88
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	99.88
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	99.88
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	99.88
2izr_A	330	Casein kinase I isoform gamma-3; serine/threonine-	99.88
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.88
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	99.88
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	99.88
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	99.88
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	99.88
1cm8_A	367	Phosphorylated MAP kinase P38-gamma; phosphorylati	99.88
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	99.88
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	99.88
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	99.88
3qyz_A	364	Mitogen-activated protein kinase 1; transferase, s	99.88
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	99.88
3q4u_A	301	Activin receptor type-1; structural genomics conso	99.88
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	99.88
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	99.88
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	99.88
2xrw_A	371	Mitogen-activated protein kinase 8; transcription,	99.88
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	99.88
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	99.88
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	99.88
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	99.88
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	99.88
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	99.88
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	99.88
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	99.88
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	99.88
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	99.88
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.88
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	99.88
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	99.88
2fst_X	367	Mitogen-activated protein kinase 14; active mutant	99.88
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	99.88
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	99.88
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	99.87
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	99.87
3pls_A	298	Macrophage-stimulating protein receptor; protein k	99.87
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	99.87
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	99.87
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	99.87
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	99.87
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	99.87
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	99.87
1csn_A	298	Casein kinase-1; phosphotransferase; HET: ATP; 2.0	99.87
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	99.87
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	99.87
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	99.87
4hcu_A	269	Tyrosine-protein kinase ITK/TSK; transferase-trans	99.87
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	99.87
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	99.87
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	99.87
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	99.87
1ua2_A	346	CAK, cell division protein kinase 7; cell cycle, p	99.87
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	99.87
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.87
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.87
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	99.87
4hgt_A	296	Casein kinase I isoform delta; CK1D, inhibitor, tr	99.87
3pg1_A	362	Mitogen-activated protein kinase, putative (MAP K	99.87
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	99.87
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	99.87
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	99.87
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	99.87
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	99.87
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	99.87
1wak_A	397	Serine/threonine-protein kinase SPRK1; SRPK, trans	99.87
3op5_A	364	Serine/threonine-protein kinase VRK1; adenosine tr	99.87
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	99.87
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	99.87
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	99.87
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	99.87
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	99.87
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	99.86
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	99.86
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.86
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	99.86
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	99.86
4exu_A	371	Mitogen-activated protein kinase 13; P38 kinase, t	99.86
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	99.86
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	99.86
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	99.86
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	99.86
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	99.86
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	99.86
3mtl_A	324	Cell division protein kinase 16; pctaire1, indirub	99.86
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	99.86
3uzp_A	296	CKI-delta, CKID, casein kinase I isoform delta; CK	99.86
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	99.86
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	99.86
2b9h_A	353	MAP kinase FUS3, mitogen-activated protein kinase	99.86
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	99.86
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	99.86
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	99.86
3kvw_A	429	DYRK2, dual specificity tyrosine-phosphorylation-r	99.86
3coi_A	353	Mitogen-activated protein kinase 13; P38D, P38delt	99.86
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	99.86
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	99.86
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	99.86
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	99.86
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	99.86
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	99.86
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	99.86
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	99.86
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	99.86
4fl3_A	635	Tyrosine-protein kinase SYK; transferase; HET: ANP	99.86
3nsz_A	330	CK II alpha, casein kinase II subunit alpha; inhib	99.86
3sv0_A	483	Casein kinase I-like; typical kinase domain fold,	99.86
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	99.86
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	99.86
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	99.86
2jii_A	352	Serine/threonine-protein kinase VRK3 molecule: VA	99.86
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	99.86
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	99.86
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	99.86
3fme_A	290	Dual specificity mitogen-activated protein kinase;	99.85
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	99.85
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	99.85
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	99.85
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	99.85
3e3p_A	360	Protein kinase, putative glycogen synthase kinase;	99.85
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	99.85
3eb0_A	383	Putative uncharacterized protein; kinase cryptospo	99.85
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	99.85
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	99.85
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.85
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	99.85
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	99.85
2i6l_A	320	Mitogen-activated protein kinase 6; MAPK6, ERK3, e	99.85
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	99.85
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.85
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	99.85
3bhy_A	283	Death-associated protein kinase 3; death associate	99.85
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	99.85
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	99.85
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	99.85
1vzo_A	355	Ribosomal protein S6 kinase alpha 5; protein kinas	99.85
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.85
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	99.85
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	99.85
2v62_A	345	Serine/threonine-protein kinase VRK2; transferase,	99.85
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	99.85
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	99.85
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	99.85
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	99.85
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	99.85
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	99.85
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	99.85
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	99.84
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	99.84
1q8y_A	373	SR protein kinase; transferase; HET: ADP ADE; 2.05	99.84
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	99.84
3aln_A	327	Dual specificity mitogen-activated protein kinase;	99.84
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	99.84
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	99.84
3an0_A	340	Dual specificity mitogen-activated protein kinase;	99.84
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	99.84
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	99.84
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	99.84
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	99.84
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	99.84
2eu9_A	355	Dual specificity protein kinase CLK3; kinase domai	99.84
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.84
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	99.84
1z57_A	339	Dual specificity protein kinase CLK1; protein tyro	99.84
2vx3_A	382	Dual specificity tyrosine-phosphorylation- regula	99.84
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	99.83
2a19_B	284	Interferon-induced, double-stranded RNA-activated	99.83
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	99.83
1blx_A	326	Cyclin-dependent kinase 6; inhibitor protein, cycl	99.83
2dyl_A	318	Dual specificity mitogen-activated protein kinase	99.83
2vuw_A	336	Serine/threonine-protein kinase haspin; cell cycle	99.82
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.82
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	99.82
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	99.82
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.82
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	99.82
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.81
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	99.81
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.81
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.81
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.81
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.81
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	99.81
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.81
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.81
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.81
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.8
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.8
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.8
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.79
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.79
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.78
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.76
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.75
3uqc_A	286	Probable conserved transmembrane protein; structur	99.75
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.75
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.75
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.74
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.74
3m2w_A	299	MAP kinase-activated protein kinase 2; small molec	99.72
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.7
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.69
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.69
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.68
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.68
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.68
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.67
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.65
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.65
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.64
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.63
3en9_A	540	Glycoprotease, O-sialoglycoprotein endopeptidase/p	99.63
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.6
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.58
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.58
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.56
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.56
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.55
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.5
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.48
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.48
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.47
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.46
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.46
1zar_A	282	RIO2 kinase; serine kinase, winged-helix, RIO doma	99.45
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.36
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.35
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.34
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.3
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.17
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.15
1zth_A	258	RIO1 serine protein kinase; ribosome biogenesis, r	99.07
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.86
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.85
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.8
4gyi_A	397	RIO2 kinase; protein kinase, ADP complex, phosphoa	98.79
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.78
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.58
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.58
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.55
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.52
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.41
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.31
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.29
3tm0_A	263	Aminoglycoside 3'-phosphotransferase; protein kina	97.15
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.02
1nd4_A	264	Aminoglycoside 3'-phosphotransferase; protein kina	97.0
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.69
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.46
3sg8_A	304	APH(2'')-ID; antibiotic resistance enzyme, transfe	96.11
3r70_A	320	Aminoglycoside phosphotransferase; structural geno	92.92
3dxp_A	359	Putative acyl-COA dehydrogenase; protein kinase-li	92.59
2q83_A	346	YTAA protein; 2635576, structural genomics, joint	89.95
2pyw_A	420	Uncharacterized protein; 5-methylthioribose kinase	89.43
4gkh_A	272	Aminoglycoside 3'-phosphotransferase APHA1-IAB; py	84.16
3ovc_A	362	Hygromycin-B 4-O-kinase; aminoglycoside phosphotra	83.52
2ppq_A	322	HSK, HK, homoserine kinase; structural genomics, M	83.46
3csv_A	333	Aminoglycoside phosphotransferase; YP_614837.1, ph	82.84
3f7w_A	288	Putative fructosamine-3-kinase; YP_290396.1, struc	82.41
2l2t_A	44	Receptor tyrosine-protein kinase ERBB-4; transmemb	82.12
3tdw_A	306	Gentamicin resistance protein; kinase, phosphoryl	81.23
3ats_A	357	Putative uncharacterized protein; hypothetical pro	80.03

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=2.5e-77  Score=722.61  Aligned_cols=538  Identities=31%  Similarity=0.480  Sum_probs=416.1

Q ss_pred             chHHHHHHHHHHHHhccCCCccccccccCCCCCCccceeeeeCCCCCcEEEEEcCCCCCccc---cC-------------
Q 045449            6 IISQHQQALLALKAHISYDHTNLFARNWTSSTSVCIWIGITCDVNSHRVIGLNISSFNLQGT---IT-------------   69 (823)
Q Consensus         6 ~~~~~~~aLl~~k~~~~~~~~~~~~~~W~~~~~~c~w~gv~c~~~~~~v~~L~L~~~~l~g~---~~-------------   69 (823)
                      ..++||+|||+||+++. ||. .++ +|+.++|||+|.||+|+  +++|++|||+++.+.|.   ++             
T Consensus         9 ~~~~~~~all~~k~~~~-~~~-~l~-~W~~~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~   83 (768)
T 3rgz_A            9 SLYREIHQLISFKDVLP-DKN-LLP-DWSSNKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLF   83 (768)
T ss_dssp             CHHHHHHHHHHHHTTCS-CTT-SST-TCCTTSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEE
T ss_pred             CCHHHHHHHHHHHhhCC-Ccc-ccc-CCCCCCCCcCCcceEEC--CCcEEEEECCCCCcCCccCccChhHhccCcccccC
Confidence            46899999999999986 777 676 99988999999999998  68999999999999887   54             


Q ss_pred             ----------cccCCCCCCcEEEccCCCCCCCCCC--CCCCCCCCCEEECCCCcCcCCCchhh-hcCCCCcEEecccccc
Q 045449           70 ----------PQLGNLSSLQTLDLSHNKLSGNIPS--SIFNMHTLKLLDFSDNQLFGSLSSFI-FNMSSMTTIDLSINRL  136 (823)
Q Consensus        70 ----------~~l~~l~~L~~L~Ls~N~l~g~~p~--~~~~l~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~Ls~N~l  136 (823)
                                +.++++++|++|||++|.++|.+|.  .++++++|++|||++|.+++.+|..+ .++++|++|||++|++
T Consensus        84 ~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l  163 (768)
T 3rgz_A           84 LSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSI  163 (768)
T ss_dssp             CTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCC
T ss_pred             CcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCcc
Confidence                      4566777788888888887777776  77777777777777777766665543 4455555555555554


Q ss_pred             cCccCcc---c--------------------------------------cCCCCCCccccccceeeeccceeeccCcccc
Q 045449          137 SGELPAN---I--------------------------------------CKIPSTLSKCKQLEELNLGFNNLSGAIPKEI  175 (823)
Q Consensus       137 ~~~~p~~---~--------------------------------------~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l  175 (823)
                      ++..|..   +                                      ...+..++++++|++|+|++|++++.+|..+
T Consensus       164 ~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l  243 (768)
T 3rgz_A          164 SGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAI  243 (768)
T ss_dssp             EEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHHT
T ss_pred             CCcCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHHH
Confidence            4333221   0                                      0111225666777777777777776666666


Q ss_pred             ccchhhHHHHHhhcCCCc----------------------ccCCcccCCc-chhhhhccccccccCCccccccCCCCCcE
Q 045449          176 GNLTKLKEIISTITNSTV----------------------CEIPREIGNL-PYLARLALATNNLVGVVPVTIFNMSALKE  232 (823)
Q Consensus       176 ~~l~~L~~L~~l~~n~~~----------------------~~ip~~l~~l-~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  232 (823)
                      +++++|++|. +..|.+.                      +.+|..+... ++|++|+|++|++++.+|..|.++++|++
T Consensus       244 ~~l~~L~~L~-Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  322 (768)
T 3rgz_A          244 STCTELKLLN-ISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLES  322 (768)
T ss_dssp             TTCSSCCEEE-CCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCE
T ss_pred             hcCCCCCEEE-CCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccE
Confidence            6666666553 4444443                      3555555554 77777777777777777777777777777


Q ss_pred             EEccCCcccccCCcccccCCCCccEEEeeccccccccCccccCC---------------------------CCCCeEEee
Q 045449          233 ISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSITNS---------------------------SKLSDLELG  285 (823)
Q Consensus       233 L~Ls~N~l~g~lp~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l---------------------------~~L~~L~Ls  285 (823)
                      |+|++|.++|.+|...+..+++|++|+|++|++++.+|..+.++                           ++|++|+++
T Consensus       323 L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~  402 (768)
T 3rgz_A          323 LALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQ  402 (768)
T ss_dssp             EECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECC
T ss_pred             EECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECC
Confidence            77777777777776644446777777777777666666655444                           345555555


Q ss_pred             cccccccCCCccCCCcccCcccccCccccCCCCcccccccccCCCCceEEEeecCCCCccCCccccccccccceEEecCC
Q 045449          286 ENLFSGFIPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGILPKSIGNFSLSLETILMANC  365 (823)
Q Consensus       286 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N  365 (823)
                      +|++++.+|..++++++|++|++++|++++.     .+..+.++++|+.|++++|.+++.+|..+..+ ++|++|++++|
T Consensus       403 ~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-----~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l-~~L~~L~L~~N  476 (768)
T 3rgz_A          403 NNGFTGKIPPTLSNCSELVSLHLSFNYLSGT-----IPSSLGSLSKLRDLKLWLNMLEGEIPQELMYV-KTLETLILDFN  476 (768)
T ss_dssp             SSEEEEECCGGGGGCTTCCEEECCSSEEESC-----CCGGGGGCTTCCEEECCSSCCCSCCCGGGGGC-TTCCEEECCSS
T ss_pred             CCccccccCHHHhcCCCCCEEECcCCcccCc-----ccHHHhcCCCCCEEECCCCcccCcCCHHHcCC-CCceEEEecCC
Confidence            5555556666677777777777777777766     55678888888888888888888888888888 68999999999


Q ss_pred             cceeccCccccCcccccEEEcccCcCCCCchhcccccCCCCEEEccCCCCCCcchHhhhcCCCCCEEEcccCcCcccccc
Q 045449          366 SISGNIPQVVGNLSNLLVLELGGNNLTGPIPVTFSQLQTLQAFDLTRNKLAGPITDELCHLARLHSLVLQGNKFSGSIPS  445 (823)
Q Consensus       366 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~  445 (823)
                      ++++.+|..+.++++|++|+|++|+++|.+|.+++.+++|++|+|++|+++|.+|..++.+++|+.|+|++|+++|.+|.
T Consensus       477 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~  556 (768)
T 3rgz_A          477 DLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPA  556 (768)
T ss_dssp             CCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCG
T ss_pred             cccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCCh
Confidence            99988898899999999999999999988999999999999999999999999999999999999999999988887776


Q ss_pred             ccc----------------------------------------------------------------------CCCCCCe
Q 045449          446 CLG----------------------------------------------------------------------NLTSVRV  455 (823)
Q Consensus       446 ~~~----------------------------------------------------------------------~l~~L~~  455 (823)
                      .+.                                                                      .+++|+.
T Consensus       557 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~  636 (768)
T 3rgz_A          557 AMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMF  636 (768)
T ss_dssp             GGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCE
T ss_pred             HHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccE
Confidence            442                                                                      3467888


Q ss_pred             EeccCCccccccchhhhccCCCcEEeccccccccccCccccCCCCCcEEEcccCCCCCCCCCccc---------------
Q 045449          456 LYLGLNIFTSVLSSTIWNLKDILFIDVSSNFLDGPLSLDIGNLKVVIGLDFSRNNLSGDIPITIG---------------  520 (823)
Q Consensus       456 L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~ip~~~~---------------  520 (823)
                      |||++|+++|.+|..++.++.|+.||||+|+++|.+|..+++++.|+.|||++|+++|.||..++               
T Consensus       637 LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l  716 (768)
T 3rgz_A          637 LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNL  716 (768)
T ss_dssp             EECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEE
T ss_pred             EECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcc
Confidence            99999999999999999999999999999999999999999999999999999999999998765               


Q ss_pred             CccCCCCCCCCCCCcccccCCcccCCCCCCCCCCCCCC
Q 045449          521 EGEIPRGGPFANLTAKSFMGNELLCGLPDLQVSPCKPN  558 (823)
Q Consensus       521 ~g~ip~~~~~~~~~~~~~~~n~~~c~~~~~~~~~c~~~  558 (823)
                      +|.||..+++.++...+|.||+++||.|..   +|...
T Consensus       717 ~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~---~C~~~  751 (768)
T 3rgz_A          717 SGPIPEMGQFETFPPAKFLNNPGLCGYPLP---RCDPS  751 (768)
T ss_dssp             EEECCSSSSGGGSCGGGGCSCTEEESTTSC---CCCSC
T ss_pred             cccCCCchhhccCCHHHhcCCchhcCCCCc---CCCCC
Confidence            689999999999999999999999998853   68644

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=3.3e-63  Score=599.28  Aligned_cols=456  Identities=30%  Similarity=0.465  Sum_probs=389.2

Q ss_pred             cEEEEEcCCCCCccccCcccCCCCCCcEEEccCCCCCCCCCCCCCCCCCCCEEECCCCcCcCCCchhhhcCCCCcEEecc
Q 045449           53 RVIGLNISSFNLQGTITPQLGNLSSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQLFGSLSSFIFNMSSMTTIDLS  132 (823)
Q Consensus        53 ~v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls  132 (823)
                      +++.|++++|.+.+.++.  .++++|++|+|++|++++.+|. |+++++|++|+|++|.+++.+|..|+++++|++|+|+
T Consensus       179 ~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls  255 (768)
T 3rgz_A          179 ELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNIS  255 (768)
T ss_dssp             TCCEEECCSSEEESCCBC--TTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECC
T ss_pred             CCCEEECCCCcccccCCc--ccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECC
Confidence            456666666666554432  5566666666666666655554 6666666666666666666666666666666666666


Q ss_pred             cccccCccCccc---------------cCCCCCCccc-cccceeeeccceeeccCccccccchhhHHHHHhhcCCCcccC
Q 045449          133 INRLSGELPANI---------------CKIPSTLSKC-KQLEELNLGFNNLSGAIPKEIGNLTKLKEIISTITNSTVCEI  196 (823)
Q Consensus       133 ~N~l~~~~p~~~---------------~~~p~~~~~l-~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~~l~~n~~~~~i  196 (823)
                      +|++++.+|..-               ..+|..+..+ ++|++|+|++|++++.+|..|+++++|++|. +.+|.+.+.+
T Consensus       256 ~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~-L~~n~l~~~i  334 (768)
T 3rgz_A          256 SNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLA-LSSNNFSGEL  334 (768)
T ss_dssp             SSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEE-CCSSEEEEEC
T ss_pred             CCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEE-CCCCcccCcC
Confidence            666555444310               0234444554 8999999999999999999999999998886 8888888888


Q ss_pred             Ccc-cCCcchhhhhccccccccCCccccccCCC-CCcEEEccCCcccccCCcccccC-CCCccEEEeeccccccccCccc
Q 045449          197 PRE-IGNLPYLARLALATNNLVGVVPVTIFNMS-ALKEISLLNNSLSGSLPSRIDLS-LPNVETLNLGINSFSGTIPSSI  273 (823)
Q Consensus       197 p~~-l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~-~L~~L~Ls~N~l~g~lp~~~~~~-l~~L~~L~Ls~N~l~~~~p~~~  273 (823)
                      |.. +.++++|++|+|++|++++.+|..+.+++ +|++|++++|.++|.+|..+... +++|++|+|++|++++.+|..+
T Consensus       335 p~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l  414 (768)
T 3rgz_A          335 PMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTL  414 (768)
T ss_dssp             CHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGG
T ss_pred             CHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHH
Confidence            876 89999999999999999989999998887 89999999999998888776532 6789999999999999999999


Q ss_pred             cCCCCCCeEEeecccccccCCCccCCCcccCcccccCccccCCCCcccccccccCCCCceEEEeecCCCCccCCcccccc
Q 045449          274 TNSSKLSDLELGENLFSGFIPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGILPKSIGNF  353 (823)
Q Consensus       274 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~  353 (823)
                      .++++|++|+|++|++++.+|..|+.+++|++|++++|.+++.     ++..+..+++|+.|++++|++++.+|..+..+
T Consensus       415 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-----~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l  489 (768)
T 3rgz_A          415 SNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGE-----IPQELMYVKTLETLILDFNDLTGEIPSGLSNC  489 (768)
T ss_dssp             GGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSC-----CCGGGGGCTTCCEEECCSSCCCSCCCGGGGGC
T ss_pred             hcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCc-----CCHHHcCCCCceEEEecCCcccCcCCHHHhcC
Confidence            9999999999999999999999999999999999999999987     56788999999999999999999999999999


Q ss_pred             ccccceEEecCCcceeccCccccCcccccEEEcccCcCCCCchhcccccCCCCEEEccCCCCCCcchHhhh---------
Q 045449          354 SLSLETILMANCSISGNIPQVVGNLSNLLVLELGGNNLTGPIPVTFSQLQTLQAFDLTRNKLAGPITDELC---------  424 (823)
Q Consensus       354 ~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~---------  424 (823)
                       ++|++|++++|++++.+|.+++.+++|++|+|++|+++|.+|..+..+++|++|+|++|+++|.+|..+.         
T Consensus       490 -~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~  568 (768)
T 3rgz_A          490 -TNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAAN  568 (768)
T ss_dssp             -TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCS
T ss_pred             -CCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhh
Confidence             7999999999999999999999999999999999999999999999999999999999999988887543         


Q ss_pred             -------------------------------------------------------------cCCCCCEEEcccCcCcccc
Q 045449          425 -------------------------------------------------------------HLARLHSLVLQGNKFSGSI  443 (823)
Q Consensus       425 -------------------------------------------------------------~l~~L~~L~Ls~N~l~g~~  443 (823)
                                                                                   .+++|+.|||++|+++|.+
T Consensus       569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~i  648 (768)
T 3rgz_A          569 FIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYI  648 (768)
T ss_dssp             TTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCC
T ss_pred             ccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccC
Confidence                                                                         2467899999999999999


Q ss_pred             cccccCCCCCCeEeccCCccccccchhhhccCCCcEEeccccccccccCccccCCCCCcEEEcccCCCCCCCCCc
Q 045449          444 PSCLGNLTSVRVLYLGLNIFTSVLSSTIWNLKDILFIDVSSNFLDGPLSLDIGNLKVVIGLDFSRNNLSGDIPIT  518 (823)
Q Consensus       444 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~ip~~  518 (823)
                      |..+++++.|+.|+|++|+++|.+|..++++++|+.||||+|+++|.+|..+++++.|++||+++|+|+|.||..
T Consensus       649 p~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~  723 (768)
T 3rgz_A          649 PKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM  723 (768)
T ss_dssp             CGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS
T ss_pred             CHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999976

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=4.2e-61  Score=567.93  Aligned_cols=474  Identities=19%  Similarity=0.265  Sum_probs=297.1

Q ss_pred             HHHHHHHHHHHHhccCCCcc-------ccccccCCCCCCccc---eeeeeCCCCCcEEEEEcCCCCCccccCcccCCCCC
Q 045449            8 SQHQQALLALKAHISYDHTN-------LFARNWTSSTSVCIW---IGITCDVNSHRVIGLNISSFNLQGTITPQLGNLSS   77 (823)
Q Consensus         8 ~~~~~aLl~~k~~~~~~~~~-------~~~~~W~~~~~~c~w---~gv~c~~~~~~v~~L~L~~~~l~g~~~~~l~~l~~   77 (823)
                      .+|++||.+||+++..+...       ... +|+.+.|||.|   .||+|+.. +||+.|+|++++++|.+|+++++|++
T Consensus        29 ~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~-~W~~~~~~c~w~~~~GV~C~~~-~~V~~L~L~~~~l~g~lp~~l~~L~~  106 (636)
T 4eco_A           29 IKDYLALKEIWDALNGKNWSQQGFGTQPGA-NWNFNKELDMWGAQPGVSLNSN-GRVTGLSLEGFGASGRVPDAIGQLTE  106 (636)
T ss_dssp             HHHHHHHHHHHHHTTGGGCCCCC------C-CCCCSSCGGGTTCCTTEEECTT-CCEEEEECTTSCCEEEECGGGGGCTT
T ss_pred             HHHHHHHHHHHHHcCCCCcccCCcCCccCC-CCCCCCCcccccCCCCeEEcCC-CCEEEEEecCcccCCcCChHHhcCcc
Confidence            47999999999997544322       122 79989999999   99999865 89999999999999999999999999


Q ss_pred             CcEEEccCCCCC------C------CCCCCCCCCCCCCEEECCCCcCcCCCchhhhcC-CC------------------C
Q 045449           78 LQTLDLSHNKLS------G------NIPSSIFNMHTLKLLDFSDNQLFGSLSSFIFNM-SS------------------M  126 (823)
Q Consensus        78 L~~L~Ls~N~l~------g------~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l-~~------------------L  126 (823)
                      |++|||++|.+.      |      .+|...  +..|+ +++++|.+.+.+|..+..+ ..                  +
T Consensus       107 L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l  183 (636)
T 4eco_A          107 LEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITL  183 (636)
T ss_dssp             CCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCC
T ss_pred             ceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccch
Confidence            999999999872      2      233322  34566 7777777777766665421 11                  1


Q ss_pred             cEEecc--cccccCccCccccCCCCCCccccccceeeeccceeecc-----------------Cccccc--cchhhHHHH
Q 045449          127 TTIDLS--INRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGA-----------------IPKEIG--NLTKLKEII  185 (823)
Q Consensus       127 ~~L~Ls--~N~l~~~~p~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~-----------------~p~~l~--~l~~L~~L~  185 (823)
                      +.+.+.  .|+++| +|..+       +++++|++|+|++|+++|.                 +|..++  ++++|++|.
T Consensus       184 ~~l~l~~~~n~l~~-ip~~l-------~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~  255 (636)
T 4eco_A          184 KDTQIGQLSNNITF-VSKAV-------MRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVE  255 (636)
T ss_dssp             CTTTTTCCSCEEEE-ECGGG-------GGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEE
T ss_pred             hhhhhccccCCCcc-CCHHH-------hcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEE
Confidence            222221  466665 55554       6777777777777777764                 555555  555555443


Q ss_pred             HhhcCCCcccCCcccCCcchhhhhcccccc-ccC-CccccccCC------CCCcEEEccCCcccccCCc--ccccCCCCc
Q 045449          186 STITNSTVCEIPREIGNLPYLARLALATNN-LVG-VVPVTIFNM------SALKEISLLNNSLSGSLPS--RIDLSLPNV  255 (823)
Q Consensus       186 ~l~~n~~~~~ip~~l~~l~~L~~L~Ls~N~-l~~-~~p~~~~~l------~~L~~L~Ls~N~l~g~lp~--~~~~~l~~L  255 (823)
                       +.+|.+.+.+|..|+++++|++|+|++|+ +++ .+|..++++      ++|++|+|++|+++ .+|.  .+.. +++|
T Consensus       256 -L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~-l~~L  332 (636)
T 4eco_A          256 -VYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQK-MKKL  332 (636)
T ss_dssp             -EECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTT-CTTC
T ss_pred             -ecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhcc-CCCC
Confidence             44444555555555555666666666665 665 566555554      66666666666666 5665  4433 6666


Q ss_pred             cEEEeeccccccccCccccCCCCCCeEEeecccccccCCCccCCCcc-cCcccccCccccCCCCcccccccccCCC--Cc
Q 045449          256 ETLNLGINSFSGTIPSSITNSSKLSDLELGENLFSGFIPNTIGNLRN-LEFGNIADNYLTSSTPELSFLSSLTNCK--KL  332 (823)
Q Consensus       256 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~-L~~L~L~~N~l~~~~~~~~~~~~l~~l~--~L  332 (823)
                      ++|+|++|+++|.+| .+..+++|++|+|++|+++ .+|..+..+++ |++|++++|.++..      |..+..++  +|
T Consensus       333 ~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~l------p~~~~~~~l~~L  404 (636)
T 4eco_A          333 GMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKYI------PNIFDAKSVSVM  404 (636)
T ss_dssp             CEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCSSC------CSCCCTTCSSCE
T ss_pred             CEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCccc------chhhhhcccCcc
Confidence            666666666666666 5666666666666666666 55555666666 66666666666532      23333332  56


Q ss_pred             eEEEeecCCCCccCCcccc-------ccccccceEEecCCcceeccCccccCcccccEEEcccCcCCCCchhc-cccc--
Q 045449          333 KVLIVTGNPLDGILPKSIG-------NFSLSLETILMANCSISGNIPQVVGNLSNLLVLELGGNNLTGPIPVT-FSQL--  402 (823)
Q Consensus       333 ~~L~Ls~N~l~~~~p~~~~-------~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~-~~~l--  402 (823)
                      +.|++++|.+++.+|..+.       .+ .+|++|++++|+++...+..+..+++|++|+|++|+++ .+|.. +...  
T Consensus       405 ~~L~Ls~N~l~~~~p~~l~~~~~~~~~~-~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~  482 (636)
T 4eco_A          405 SAIDFSYNEIGSVDGKNFDPLDPTPFKG-INVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENE  482 (636)
T ss_dssp             EEEECCSSCTTTTTTCSSCTTCSSCCCC-CCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTE
T ss_pred             CEEECcCCcCCCcchhhhcccccccccC-CCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccc
Confidence            6666666666666665555       44 45666666666666333333445666666666666666 34432 2222  


Q ss_pred             -----CCCCEEEccCCCCCCcchHhhh--cCCCCCEEEcccCcCcccccccccCCCCCCeEec------cCCccccccch
Q 045449          403 -----QTLQAFDLTRNKLAGPITDELC--HLARLHSLVLQGNKFSGSIPSCLGNLTSVRVLYL------GLNIFTSVLSS  469 (823)
Q Consensus       403 -----~~L~~L~Ls~N~l~~~~p~~~~--~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L------s~N~l~~~~p~  469 (823)
                           ++|++|+|++|+++ .+|..+.  .+++|+.|+|++|++++ +|..+.++++|+.|+|      ++|++.+.+|.
T Consensus       483 ~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~  560 (636)
T 4eco_A          483 NFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPE  560 (636)
T ss_dssp             ECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCT
T ss_pred             cccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChH
Confidence                 26666666666666 4555554  66666666666666665 5666666666666666      34556666666


Q ss_pred             hhhccCCCcEEeccccccccccCccccCCCCCcEEEcccCCCC
Q 045449          470 TIWNLKDILFIDVSSNFLDGPLSLDIGNLKVVIGLDFSRNNLS  512 (823)
Q Consensus       470 ~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~ls~N~l~  512 (823)
                      .+..+++|+.|||++|.+ +.+|..+.  +.|+.||+++|++.
T Consensus       561 ~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~  600 (636)
T 4eco_A          561 GITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNI  600 (636)
T ss_dssp             TGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTC
T ss_pred             HHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCc
Confidence            666666666666666666 55565544  56666666666554

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=2.1e-58  Score=553.68  Aligned_cols=457  Identities=18%  Similarity=0.227  Sum_probs=293.8

Q ss_pred             chHHHHHHHHHHHHhccCCCccccccccCCCC-----CC--ccc------------eeeeeCCCCCcEEEEEcCCCCCcc
Q 045449            6 IISQHQQALLALKAHISYDHTNLFARNWTSST-----SV--CIW------------IGITCDVNSHRVIGLNISSFNLQG   66 (823)
Q Consensus         6 ~~~~~~~aLl~~k~~~~~~~~~~~~~~W~~~~-----~~--c~w------------~gv~c~~~~~~v~~L~L~~~~l~g   66 (823)
                      .-.+|++||++||+++. ||      +|+.+.     +|  |.|            .||+|+. .+||+.|+|+++++.|
T Consensus       266 ~~~~d~~ALl~~k~~l~-~~------~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~~~L~G  337 (876)
T 4ecn_A          266 EYIKDYKALKAIWEALD-GK------NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAGFGAKG  337 (876)
T ss_dssp             HHHHHHHHHHHHHHHTT-GG------GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTTTCCEE
T ss_pred             cchHHHHHHHHHHHHcC-CC------CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECccCCCCC
Confidence            45689999999999974 44      676443     55  999            9999986 6899999999999999


Q ss_pred             ccCcccCCCCCCcEEEc-cCCCCCCCCCCCC-------------------------------------------------
Q 045449           67 TITPQLGNLSSLQTLDL-SHNKLSGNIPSSI-------------------------------------------------   96 (823)
Q Consensus        67 ~~~~~l~~l~~L~~L~L-s~N~l~g~~p~~~-------------------------------------------------   96 (823)
                      .+|+++++|++|++||| ++|.++|..|...                                                 
T Consensus       338 ~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i  417 (876)
T 4ecn_A          338 RVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPI  417 (876)
T ss_dssp             EECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCC
T ss_pred             cCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCcccccc
Confidence            99999999999999999 8998887744221                                                 


Q ss_pred             --CCCCCCCEEECCC--CcCcCCCchhhhcCCCCcEEecccccccCc-cCccccC---------CCCCCc--ccccccee
Q 045449           97 --FNMHTLKLLDFSD--NQLFGSLSSFIFNMSSMTTIDLSINRLSGE-LPANICK---------IPSTLS--KCKQLEEL  160 (823)
Q Consensus        97 --~~l~~L~~L~Ls~--N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~---------~p~~~~--~l~~L~~L  160 (823)
                        .....++.+.++.  |+|++ +|..|+++++|++|+|++|+|+|. +|..+..         +|..++  ++++|++|
T Consensus       418 ~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L  496 (876)
T 4ecn_A          418 KKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDV  496 (876)
T ss_dssp             CCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEE
T ss_pred             ccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEE
Confidence              1122334444443  77777 788888888888888888888872 2221111         344435  77777777


Q ss_pred             eeccceeeccCccccccchhhHHHHHhhcCCCcccCCcccCCcchhhhhcccccc-ccC-CccccccCCC-------CCc
Q 045449          161 NLGFNNLSGAIPKEIGNLTKLKEIISTITNSTVCEIPREIGNLPYLARLALATNN-LVG-VVPVTIFNMS-------ALK  231 (823)
Q Consensus       161 ~Ls~N~l~~~~p~~l~~l~~L~~L~~l~~n~~~~~ip~~l~~l~~L~~L~Ls~N~-l~~-~~p~~~~~l~-------~L~  231 (823)
                      +|++|++.+.+|..|++++                         +|+.|+|++|+ +++ .+|..+.+++       +|+
T Consensus       497 ~Ls~N~l~~~iP~~l~~L~-------------------------~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~  551 (876)
T 4ecn_A          497 ELYNCPNMTQLPDFLYDLP-------------------------ELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQ  551 (876)
T ss_dssp             EEESCTTCCSCCGGGGGCS-------------------------SCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCC
T ss_pred             ECcCCCCCccChHHHhCCC-------------------------CCCEEECcCCCCcccccchHHHHhhhhcccccCCcc
Confidence            7777777666666555555                         44555555555 555 4554444333       566


Q ss_pred             EEEccCCcccccCCc--ccccCCCCccEEEeeccccccccCccccCCCCCCeEEeecccccccCCCccCCCcc-cCcccc
Q 045449          232 EISLLNNSLSGSLPS--RIDLSLPNVETLNLGINSFSGTIPSSITNSSKLSDLELGENLFSGFIPNTIGNLRN-LEFGNI  308 (823)
Q Consensus       232 ~L~Ls~N~l~g~lp~--~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~-L~~L~L  308 (823)
                      +|+|++|.++ .+|.  .+.. +++|++|+|++|+++ .+| .|..+++|+.|+|++|+++ .+|..+..+++ |+.|+|
T Consensus       552 ~L~Ls~N~L~-~ip~~~~l~~-L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~L  626 (876)
T 4ecn_A          552 IFYMGYNNLE-EFPASASLQK-MVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGF  626 (876)
T ss_dssp             EEECCSSCCC-BCCCHHHHTT-CTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEEC
T ss_pred             EEEeeCCcCC-ccCChhhhhc-CCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEEC
Confidence            6666666665 5555  3332 556666666666655 455 5555566666666666665 55555555555 666666


Q ss_pred             cCccccCCCCcccccccccCCC--CceEEEeecCCCCccCCccc---ccc-ccccceEEecCCcceeccCccccCccccc
Q 045449          309 ADNYLTSSTPELSFLSSLTNCK--KLKVLIVTGNPLDGILPKSI---GNF-SLSLETILMANCSISGNIPQVVGNLSNLL  382 (823)
Q Consensus       309 ~~N~l~~~~~~~~~~~~l~~l~--~L~~L~Ls~N~l~~~~p~~~---~~~-~~~L~~L~L~~N~l~~~~p~~~~~l~~L~  382 (823)
                      ++|.++..      |..+..++  +|+.|+|++|.++|.+|...   ..+ ..+|++|+|++|+++...+..+..+++|+
T Consensus       627 s~N~L~~l------p~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~  700 (876)
T 4ecn_A          627 SHNKLKYI------PNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPIS  700 (876)
T ss_dssp             CSSCCCSC------CSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCS
T ss_pred             cCCCCCcC------chhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCC
Confidence            66665532      23333333  26666666666665544221   111 02566666666666632222233566666


Q ss_pred             EEEcccCcCCCCchhcccc--------cCCCCEEEccCCCCCCcchHhhh--cCCCCCEEEcccCcCcccccccccCCCC
Q 045449          383 VLELGGNNLTGPIPVTFSQ--------LQTLQAFDLTRNKLAGPITDELC--HLARLHSLVLQGNKFSGSIPSCLGNLTS  452 (823)
Q Consensus       383 ~L~Ls~N~l~g~~p~~~~~--------l~~L~~L~Ls~N~l~~~~p~~~~--~l~~L~~L~Ls~N~l~g~~p~~~~~l~~  452 (823)
                      .|+|++|+++ .+|..+..        +++|++|+|++|+|+ .+|..+.  .+++|+.|+|++|+|++ +|..+.++++
T Consensus       701 ~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~  777 (876)
T 4ecn_A          701 TIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQ  777 (876)
T ss_dssp             EEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTT
T ss_pred             EEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCC
Confidence            6666666666 44443322        226666666666666 5555554  66666666666666665 5666666666


Q ss_pred             CCeEeccC------CccccccchhhhccCCCcEEeccccccccccCccccCCCCCcEEEcccCCCCC
Q 045449          453 VRVLYLGL------NIFTSVLSSTIWNLKDILFIDVSSNFLDGPLSLDIGNLKVVIGLDFSRNNLSG  513 (823)
Q Consensus       453 L~~L~Ls~------N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g  513 (823)
                      |+.|+|++      |++.+.+|..+..+++|+.|+|++|++ +.+|..+.  +.|+.|||++|++..
T Consensus       778 L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~  841 (876)
T 4ecn_A          778 LKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNIS  841 (876)
T ss_dssp             CCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCE
T ss_pred             CCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCc
Confidence            66666654      777788888888888888888888888 67777665  578888888888764

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=3.4e-56  Score=525.25  Aligned_cols=482  Identities=20%  Similarity=0.197  Sum_probs=423.9

Q ss_pred             ceeeeeCCC---------CCcEEEEEcCCCCCccccCcccCCCCCCcEEEccCCCCCCCCCCCCCCCCCCCEEECCCCcC
Q 045449           42 WIGITCDVN---------SHRVIGLNISSFNLQGTITPQLGNLSSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQL  112 (823)
Q Consensus        42 w~gv~c~~~---------~~~v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l  112 (823)
                      +.-|.|...         ...++.|||++|.+++..|.+|+++++|++|||++|+|++..|.+|.++++|++|+|++|.+
T Consensus        14 ~~~~~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l   93 (606)
T 3t6q_A           14 NKTYNCENLGLNEIPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPL   93 (606)
T ss_dssp             TTEEECTTSCCSSCCTTSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred             CceEECCCCCcccCcCCCCCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcc
Confidence            456778642         24789999999999998899999999999999999999999999999999999999999999


Q ss_pred             cCCCchhhhcCCCCcEEecccccccCccCccccCCCCCCccccccceeeeccceeeccCccccccchhhHHHHHhhcCCC
Q 045449          113 FGSLSSFIFNMSSMTTIDLSINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEIGNLTKLKEIISTITNST  192 (823)
Q Consensus       113 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~~l~~n~~  192 (823)
                      ++..|..|+++++|++|+|++|++++..|..+       +++++|++|+|++|++++..+..+..+++|++|. +.+|.+
T Consensus        94 ~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~-------~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~-L~~n~l  165 (606)
T 3t6q_A           94 IFMAETALSGPKALKHLFFIQTGISSIDFIPL-------HNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLD-FQNNAI  165 (606)
T ss_dssp             SEECTTTTSSCTTCCEEECTTSCCSCGGGSCC-------TTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEE-CCSSCC
T ss_pred             cccChhhhcccccccEeeccccCcccCCcchh-------ccCCcccEEECCCCcccccCcccccCCcccCEEE-cccCcc
Confidence            99999999999999999999999996545444       8899999999999999975444455588888885 888888


Q ss_pred             cccCCcccCCcchhh--hhccccccccCCccccccCC-------------------------------------------
Q 045449          193 VCEIPREIGNLPYLA--RLALATNNLVGVVPVTIFNM-------------------------------------------  227 (823)
Q Consensus       193 ~~~ip~~l~~l~~L~--~L~Ls~N~l~~~~p~~~~~l-------------------------------------------  227 (823)
                      .+..|..++.+++|+  .|++++|++++..|..+...                                           
T Consensus       166 ~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~  245 (606)
T 3t6q_A          166 HYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISP  245 (606)
T ss_dssp             CEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCG
T ss_pred             cccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccCh
Confidence            888888899999998  89999999998877665431                                           


Q ss_pred             --------CCCcEEEccCCcccccCCcccccCCCCccEEEeeccccccccCccccCCCCCCeEEeecccccccCCCccCC
Q 045449          228 --------SALKEISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSITNSSKLSDLELGENLFSGFIPNTIGN  299 (823)
Q Consensus       228 --------~~L~~L~Ls~N~l~g~lp~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~  299 (823)
                              .+|+.|++++|.++ .++...+..+++|++|++++|+++ .+|..+.++++|++|++++|++++..|..+..
T Consensus       246 ~~~~~l~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~  323 (606)
T 3t6q_A          246 AVFEGLCEMSVESINLQKHYFF-NISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASN  323 (606)
T ss_dssp             GGGGGGGGSEEEEEECTTCCCS-SCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGG
T ss_pred             hHhchhhcCceeEEEeecCccC-ccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhc
Confidence                    16788899999998 455554556999999999999998 78999999999999999999999998999999


Q ss_pred             CcccCcccccCccccCCCCcccccccccCCCCceEEEeecCCCCccC--CccccccccccceEEecCCcceeccCccccC
Q 045449          300 LRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGIL--PKSIGNFSLSLETILMANCSISGNIPQVVGN  377 (823)
Q Consensus       300 l~~L~~L~L~~N~l~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~--p~~~~~~~~~L~~L~L~~N~l~~~~p~~~~~  377 (823)
                      +++|++|++++|.+.+..+    ...+..+++|++|++++|.+++..  |..+..+ ++|++|++++|.+++..|..|..
T Consensus       324 l~~L~~L~l~~n~~~~~~~----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~  398 (606)
T 3t6q_A          324 FPSLTHLSIKGNTKRLELG----TGCLENLENLRELDLSHDDIETSDCCNLQLRNL-SHLQSLNLSYNEPLSLKTEAFKE  398 (606)
T ss_dssp             CTTCSEEECCSCSSCCBCC----SSTTTTCTTCCEEECCSSCCCEEEESTTTTTTC-TTCCEEECCSCSCEEECTTTTTT
T ss_pred             cCcCCEEECCCCCcccccc----hhhhhccCcCCEEECCCCccccccCcchhcccC-CCCCEEECCCCcCCcCCHHHhcC
Confidence            9999999999999886532    235889999999999999999876  7788888 79999999999999999999999


Q ss_pred             cccccEEEcccCcCCCCchhc-ccccCCCCEEEccCCCCCCcchHhhhcCCCCCEEEcccCcCccc---ccccccCCCCC
Q 045449          378 LSNLLVLELGGNNLTGPIPVT-FSQLQTLQAFDLTRNKLAGPITDELCHLARLHSLVLQGNKFSGS---IPSCLGNLTSV  453 (823)
Q Consensus       378 l~~L~~L~Ls~N~l~g~~p~~-~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~---~p~~~~~l~~L  453 (823)
                      +++|++|++++|++++..|.. +..+++|++|++++|.+++..|..+..+++|++|+|++|++++.   .+..+..+++|
T Consensus       399 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L  478 (606)
T 3t6q_A          399 CPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRL  478 (606)
T ss_dssp             CTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTC
T ss_pred             CccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCc
Confidence            999999999999999877654 89999999999999999999999999999999999999999873   33678999999


Q ss_pred             CeEeccCCccccccchhhhccCCCcEEeccccccccccCccccCCCCCcEEEcccCCCCCCCCCcccCccCCCCCCCCCC
Q 045449          454 RVLYLGLNIFTSVLSSTIWNLKDILFIDVSSNFLDGPLSLDIGNLKVVIGLDFSRNNLSGDIPITIGEGEIPRGGPFANL  533 (823)
Q Consensus       454 ~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~ip~~~~~g~ip~~~~~~~~  533 (823)
                      +.|+|++|++++.+|..+..+++|+.|||++|++++..|..+.+++.| .|++++|++++.+|..+.        .+..+
T Consensus       479 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~--------~l~~L  549 (606)
T 3t6q_A          479 EILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLP--------ILSQQ  549 (606)
T ss_dssp             CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHH--------HHHTS
T ss_pred             cEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcc--------cCCCC
Confidence            999999999999999999999999999999999999999999999999 999999999976665542        24566


Q ss_pred             CcccccCCcccCCC
Q 045449          534 TAKSFMGNELLCGL  547 (823)
Q Consensus       534 ~~~~~~~n~~~c~~  547 (823)
                      ...++.+|++.|..
T Consensus       550 ~~L~l~~N~~~c~c  563 (606)
T 3t6q_A          550 RTINLRQNPLDCTC  563 (606)
T ss_dssp             SEEECTTCCEECSG
T ss_pred             CEEeCCCCCccccC
Confidence            78899999999864

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=4.1e-55  Score=533.98  Aligned_cols=477  Identities=20%  Similarity=0.206  Sum_probs=372.9

Q ss_pred             ccceeeeeCCCCCcEEEEEcCCCCCccccCcccCCCCCCcEEEccCCCCCCCC-CCCCCCCCCCCEEECCCCcCcCCCch
Q 045449           40 CIWIGITCDVNSHRVIGLNISSFNLQGTITPQLGNLSSLQTLDLSHNKLSGNI-PSSIFNMHTLKLLDFSDNQLFGSLSS  118 (823)
Q Consensus        40 c~w~gv~c~~~~~~v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~N~l~g~~-p~~~~~l~~L~~L~Ls~N~l~~~~p~  118 (823)
                      |.|..|.+  ...+++.|||++|.+++..+.+|.++++|++|||++|.+.+.+ |.+|.++++|++|+|++|.|++..|.
T Consensus        14 ~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~   91 (844)
T 3j0a_A           14 CNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPD   91 (844)
T ss_dssp             CCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTT
T ss_pred             CCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHh
Confidence            67888887  4578999999999999999999999999999999999777666 78999999999999999999999999


Q ss_pred             hhhcCCCCcEEecccccccCccCccccCCCCCCccccccceeeeccceeeccCc-cccccchhhHHHHHhhcCCCcccCC
Q 045449          119 FIFNMSSMTTIDLSINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIP-KEIGNLTKLKEIISTITNSTVCEIP  197 (823)
Q Consensus       119 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~~l~~n~~~~~ip  197 (823)
                      +|+++++|++|+|++|++++.+|..     ..|.++++|++|+|++|.+++..+ ..|+++++|++|. +..|.+.+..|
T Consensus        92 ~~~~l~~L~~L~Ls~n~l~~~~~~~-----~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~-Ls~N~i~~~~~  165 (844)
T 3j0a_A           92 AFQGLFHLFELRLYFCGLSDAVLKD-----GYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSID-FSSNQIFLVCE  165 (844)
T ss_dssp             SSCSCSSCCCEECTTCCCSSCCSTT-----CCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEE-EESSCCCCCCS
T ss_pred             HccCCcccCEeeCcCCCCCcccccC-----ccccccCCCCEEECCCCcccccccchhHhhCCCCCEEE-CCCCcCCeeCH
Confidence            9999999999999999999866653     124889999999999999987765 5789999999886 88888888888


Q ss_pred             cccCCc--chhhhhccccccccCCccccccCCCC------CcEEEccCCcccccCCcccccC------------------
Q 045449          198 REIGNL--PYLARLALATNNLVGVVPVTIFNMSA------LKEISLLNNSLSGSLPSRIDLS------------------  251 (823)
Q Consensus       198 ~~l~~l--~~L~~L~Ls~N~l~~~~p~~~~~l~~------L~~L~Ls~N~l~g~lp~~~~~~------------------  251 (823)
                      ..+..+  ++|+.|+|+.|.+.+..|..+..+++      |++|++++|.+++.+|..+...                  
T Consensus       166 ~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~  245 (844)
T 3j0a_A          166 HELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGA  245 (844)
T ss_dssp             GGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBC
T ss_pred             HHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccc
Confidence            888887  78999999999999888877766655      8899999988876666543321                  


Q ss_pred             -------------------CCCccEEEeeccccccccCccccCCCCCCeEEeecccccccCCCccCCCcccCcccccCcc
Q 045449          252 -------------------LPNVETLNLGINSFSGTIPSSITNSSKLSDLELGENLFSGFIPNTIGNLRNLEFGNIADNY  312 (823)
Q Consensus       252 -------------------l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~  312 (823)
                                         .++|+.|+|++|.+.+..|..|..+++|+.|+|++|++++..|..|..+++|++|+|++|.
T Consensus       246 ~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~  325 (844)
T 3j0a_A          246 GFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNL  325 (844)
T ss_dssp             SSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCC
T ss_pred             cccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCC
Confidence                               2578888888888888888888888888888888888888888888888888888888888


Q ss_pred             ccCCCCcccccccccCCCCceEEEeecCCCCccCCccccccccccceEEecCCcceeccCccccCcccccEEEcccCcCC
Q 045449          313 LTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGILPKSIGNFSLSLETILMANCSISGNIPQVVGNLSNLLVLELGGNNLT  392 (823)
Q Consensus       313 l~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  392 (823)
                      +++.     .+..|.++++|+.|++++|.+++..+..|..+ ++|++|+|++|.+++..     .+++|+.|++++|+++
T Consensus       326 l~~~-----~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l-~~L~~L~Ls~N~l~~i~-----~~~~L~~L~l~~N~l~  394 (844)
T 3j0a_A          326 LGEL-----YSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFL-EKLQTLDLRDNALTTIH-----FIPSIPDIFLSGNKLV  394 (844)
T ss_dssp             CSCC-----CSCSCSSCTTCCEEECCSCCCCCCCSSCSCSC-CCCCEEEEETCCSCCCS-----SCCSCSEEEEESCCCC
T ss_pred             CCcc-----CHHHhcCCCCCCEEECCCCCCCccChhhhcCC-CCCCEEECCCCCCCccc-----CCCCcchhccCCCCcc
Confidence            8776     44577888888888888888888777777777 68888888888887432     2455555555555554


Q ss_pred             --------------------CC-chhcccccCCCCEEEccCCCCCCcchH-hhhcCCCCCEEEcccCcCc-----ccccc
Q 045449          393 --------------------GP-IPVTFSQLQTLQAFDLTRNKLAGPITD-ELCHLARLHSLVLQGNKFS-----GSIPS  445 (823)
Q Consensus       393 --------------------g~-~p~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~-----g~~p~  445 (823)
                                          +. .+..+..+++|++|+|++|++++..+. .+..+++|+.|+|++|.++     +..|.
T Consensus       395 ~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~  474 (844)
T 3j0a_A          395 TLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWD  474 (844)
T ss_dssp             CCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSS
T ss_pred             cccccccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchh
Confidence                                32 112234666777777777777654333 2445667777777777765     33445


Q ss_pred             cccCCCCCCeEeccCCccccccchhhhccCCCcEEeccccccccccCccccCCCCCcEEEcccCCCCCCCCCcccCccCC
Q 045449          446 CLGNLTSVRVLYLGLNIFTSVLSSTIWNLKDILFIDVSSNFLDGPLSLDIGNLKVVIGLDFSRNNLSGDIPITIGEGEIP  525 (823)
Q Consensus       446 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~ip~~~~~g~ip  525 (823)
                      .|.++++|+.|+|++|++++.+|..+..+++|+.|||++|+|++..|..+.  +.|+.||+++|+|+|.+|..       
T Consensus       475 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~-------  545 (844)
T 3j0a_A          475 VFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV-------  545 (844)
T ss_dssp             CSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC-------
T ss_pred             hhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhH-------
Confidence            677777777777777777777777777777777777777777776665554  67777777777777665544       


Q ss_pred             CCCCCCCCCcccccCCcccCCCC
Q 045449          526 RGGPFANLTAKSFMGNELLCGLP  548 (823)
Q Consensus       526 ~~~~~~~~~~~~~~~n~~~c~~~  548 (823)
                          +..+...++.+|++.|..+
T Consensus       546 ----~~~L~~l~l~~Np~~C~c~  564 (844)
T 3j0a_A          546 ----FVSLSVLDITHNKFICECE  564 (844)
T ss_dssp             ----CSSCCEEEEEEECCCCSSS
T ss_pred             ----hCCcCEEEecCCCcccccc
Confidence                3456778899999998554

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=4.6e-54  Score=514.08  Aligned_cols=480  Identities=21%  Similarity=0.222  Sum_probs=294.8

Q ss_pred             CcEEEEEcCCCCCccccCcccCCCCCCcEEEccCCCCCCCCCCCCCCCCCCCEEECCCCcCcCCCchhhhcCCCCcEEec
Q 045449           52 HRVIGLNISSFNLQGTITPQLGNLSSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQLFGSLSSFIFNMSSMTTIDL  131 (823)
Q Consensus        52 ~~v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  131 (823)
                      .+++.|+|++|++++..+..|.++++|++|||++|.+++..|..|+++++|++|+|++|.+++..+..|+++++|++|+|
T Consensus        25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L  104 (680)
T 1ziw_A           25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL  104 (680)
T ss_dssp             TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred             CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence            46888888888888777777888888888888888888888888888888888888888888666667888888888888


Q ss_pred             ccccccCccCccccCCCCCCccccccceeeeccceeeccCccccccchhhHHHHHhhcCCCcccCCcccC--Ccchhhhh
Q 045449          132 SINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEIGNLTKLKEIISTITNSTVCEIPREIG--NLPYLARL  209 (823)
Q Consensus       132 s~N~l~~~~p~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~~l~~n~~~~~ip~~l~--~l~~L~~L  209 (823)
                      ++|++++..|..+       +++++|++|+|++|.+++..|..++++++|++|. +..|.+.+..|..++  .+++|++|
T Consensus       105 ~~n~l~~~~~~~~-------~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~-L~~n~l~~~~~~~~~~~~~~~L~~L  176 (680)
T 1ziw_A          105 MSNSIQKIKNNPF-------VKQKNLITLDLSHNGLSSTKLGTQVQLENLQELL-LSNNKIQALKSEELDIFANSSLKKL  176 (680)
T ss_dssp             CSSCCCCCCSCTT-------TTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEE-CCSSCCCCBCHHHHGGGTTCEESEE
T ss_pred             CCCccCccChhHc-------cccCCCCEEECCCCcccccCchhhcccccCCEEE-ccCCcccccCHHHhhccccccccEE
Confidence            8888875444444       5556666666666666655555555555555553 444444433333222  22344444


Q ss_pred             cccccccc---------------------------------------------------CCccccccCCCC--CcEEEcc
Q 045449          210 ALATNNLV---------------------------------------------------GVVPVTIFNMSA--LKEISLL  236 (823)
Q Consensus       210 ~Ls~N~l~---------------------------------------------------~~~p~~~~~l~~--L~~L~Ls  236 (823)
                      ++++|+++                                                   +..|.+|.+++.  |++|+|+
T Consensus       177 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls  256 (680)
T 1ziw_A          177 ELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLS  256 (680)
T ss_dssp             ECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECT
T ss_pred             ECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECC
Confidence            44444443                                                   333444444432  5666666


Q ss_pred             CCcccccCCcccccCCCCccEEEeeccccccccCccc---------------------------------cCCCCCCeEE
Q 045449          237 NNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSI---------------------------------TNSSKLSDLE  283 (823)
Q Consensus       237 ~N~l~g~lp~~~~~~l~~L~~L~Ls~N~l~~~~p~~~---------------------------------~~l~~L~~L~  283 (823)
                      +|.+++..|..+. .+++|++|+|++|++++..|..|                                 ..+++|++|+
T Consensus       257 ~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~  335 (680)
T 1ziw_A          257 YNNLNVVGNDSFA-WLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLN  335 (680)
T ss_dssp             TSCCCEECTTTTT-TCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEE
T ss_pred             CCCcCccCccccc-CcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEE
Confidence            6665544433333 35666666666666655444433                                 3344455555


Q ss_pred             eecccccccCCCccCCCcccCcccccCccccCCCCc-----------------------ccccccccCCCCceEEEeecC
Q 045449          284 LGENLFSGFIPNTIGNLRNLEFGNIADNYLTSSTPE-----------------------LSFLSSLTNCKKLKVLIVTGN  340 (823)
Q Consensus       284 Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~-----------------------~~~~~~l~~l~~L~~L~Ls~N  340 (823)
                      +++|++++..+..|..+++|++|++++|.++.....                       ...+..+.++++|+.|++++|
T Consensus       336 l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N  415 (680)
T 1ziw_A          336 MEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLN  415 (680)
T ss_dssp             CCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCC
Confidence            555555555555555555555555555543211000                       001223444555555555555


Q ss_pred             CCCccCC-ccccccccccceEEecCCcceeccCccccCcccccEEEcccCcCC--CCchhcccccCCCCEEEccCCCCCC
Q 045449          341 PLDGILP-KSIGNFSLSLETILMANCSISGNIPQVVGNLSNLLVLELGGNNLT--GPIPVTFSQLQTLQAFDLTRNKLAG  417 (823)
Q Consensus       341 ~l~~~~p-~~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~--g~~p~~~~~l~~L~~L~Ls~N~l~~  417 (823)
                      .+++.+| ..+.++ .+|++|++++|++++..+..|..+++|+.|++++|.++  +.+|..|..+++|++|+|++|++++
T Consensus       416 ~l~~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~  494 (680)
T 1ziw_A          416 EIGQELTGQEWRGL-ENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIAN  494 (680)
T ss_dssp             CCEEECCSGGGTTC-TTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCC
T ss_pred             cCccccCcccccCc-ccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCc
Confidence            5554443 344444 45555555555555555555555555555555555554  4556667777777777777777776


Q ss_pred             cchHhhhcCCCCCEEEcccCcCccccc--------ccccCCCCCCeEeccCCccccccchhhhccCCCcEEecccccccc
Q 045449          418 PITDELCHLARLHSLVLQGNKFSGSIP--------SCLGNLTSVRVLYLGLNIFTSVLSSTIWNLKDILFIDVSSNFLDG  489 (823)
Q Consensus       418 ~~p~~~~~l~~L~~L~Ls~N~l~g~~p--------~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g  489 (823)
                      ..+..|.++++|++|+|++|++++..+        ..|.++++|+.|+|++|+++.+.+..|.++++|+.|||++|++++
T Consensus       495 i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~  574 (680)
T 1ziw_A          495 INDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNT  574 (680)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred             CChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCc
Confidence            666667777777777777777765321        236667777777777777776555567777777777777777776


Q ss_pred             ccCccccCCCCCcEEEcccCCCCCCCCCcccCccCCCCCCCCCCCcccccCCcccCCCC
Q 045449          490 PLSLDIGNLKVVIGLDFSRNNLSGDIPITIGEGEIPRGGPFANLTAKSFMGNELLCGLP  548 (823)
Q Consensus       490 ~~p~~~~~l~~L~~L~ls~N~l~g~ip~~~~~g~ip~~~~~~~~~~~~~~~n~~~c~~~  548 (823)
                      ..+..+..++.|+.|++++|++++..|..+.       ..+..+...++.+|++.|+.+
T Consensus       575 l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~-------~~~~~L~~l~l~~N~~~c~c~  626 (680)
T 1ziw_A          575 LPASVFNNQVSLKSLNLQKNLITSVEKKVFG-------PAFRNLTELDMRFNPFDCTCE  626 (680)
T ss_dssp             CCTTTTTTCTTCCEEECTTSCCCBCCHHHHH-------HHHTTCSEEECTTCCCCBCCC
T ss_pred             CCHhHhCCCCCCCEEECCCCcCCccChhHhc-------ccccccCEEEccCCCcccCCc
Confidence            5555667777777777777777754443321       024567788899999999754

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=5e-54  Score=506.80  Aligned_cols=465  Identities=19%  Similarity=0.149  Sum_probs=404.6

Q ss_pred             CcEEEEEcCCCCCccccCcccCCCCCCcEEEccCCCCCCCCCCCCCCCCCCCEEECCCCcCcCCCchhhhcCCCCcEEec
Q 045449           52 HRVIGLNISSFNLQGTITPQLGNLSSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQLFGSLSSFIFNMSSMTTIDL  131 (823)
Q Consensus        52 ~~v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  131 (823)
                      .+++.|+|++|.+++..+..|.++++|++|||++|+|++..|.+|.++++|++|+|++|.+++..|..|+++++|++|+|
T Consensus        32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L  111 (606)
T 3vq2_A           32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA  111 (606)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEEC
T ss_pred             CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEc
Confidence            57999999999999988889999999999999999999988999999999999999999999999999999999999999


Q ss_pred             ccccccCccCccccCCCCCCccccccceeeeccceeec-cCccccccchhhHHHHHhhcCCCcccCCcccCCcchhh---
Q 045449          132 SINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSG-AIPKEIGNLTKLKEIISTITNSTVCEIPREIGNLPYLA---  207 (823)
Q Consensus       132 s~N~l~~~~p~~~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~~L~~l~~n~~~~~ip~~l~~l~~L~---  207 (823)
                      ++|++++..+..+       +++++|++|+|++|++++ .+|..|+++++|++|. +.+|.+.+..|..++.+++|+   
T Consensus       112 ~~n~l~~~~~~~~-------~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~-Ls~n~l~~~~~~~~~~l~~L~~~l  183 (606)
T 3vq2_A          112 VETKLASLESFPI-------GQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVD-LSYNYIQTITVNDLQFLRENPQVN  183 (606)
T ss_dssp             TTSCCCCSSSSCC-------TTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEE-CCSSCCCEECTTTTHHHHHCTTCC
T ss_pred             cCCcccccccccc-------CCCCCCCEEeCCCCcccceechHhHhhcCCCCEEE-ccCCcceecChhhhhhhhcccccc
Confidence            9999986554544       889999999999999986 6799999999999986 888888888888888888876   


Q ss_pred             -hhccccccccCCccccccCCCCCcEEEccCCcccc--------------------------------------------
Q 045449          208 -RLALATNNLVGVVPVTIFNMSALKEISLLNNSLSG--------------------------------------------  242 (823)
Q Consensus       208 -~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g--------------------------------------------  242 (823)
                       .|++++|++++..+..+... +|++|++++|.+++                                            
T Consensus       184 ~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~  262 (606)
T 3vq2_A          184 LSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVT  262 (606)
T ss_dssp             CEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSE
T ss_pred             ceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhcc
Confidence             69999999987666665544 89999988887642                                            


Q ss_pred             --------------cCCcccccCCCCccEEEeeccccccccCccccCCCCCCeEEeecccccccCCCccCCCcccCcccc
Q 045449          243 --------------SLPSRIDLSLPNVETLNLGINSFSGTIPSSITNSSKLSDLELGENLFSGFIPNTIGNLRNLEFGNI  308 (823)
Q Consensus       243 --------------~lp~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  308 (823)
                                    .+|.  +..+++|+.|++++|.+. .+| .+..+++|++|++++|.+ +.+| .+ .+++|+.|++
T Consensus       263 l~~l~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~-~l~-~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l  335 (606)
T 3vq2_A          263 IDEFRLTYTNDFSDDIVK--FHCLANVSAMSLAGVSIK-YLE-DVPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTL  335 (606)
T ss_dssp             EEEEEECCCTTCCGGGGS--CGGGTTCSEEEEESCCCC-CCC-CCCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEE
T ss_pred             Hhheeccccccccccccc--cccCCCCCEEEecCccch-hhh-hccccccCCEEEcccccC-cccc-cC-CCCccceeec
Confidence                          2222  223678888888888886 455 788888899999999988 5677 44 8888999999


Q ss_pred             cCccccCCCCcccccccccCCCCceEEEeecCCCCcc--CCccccccccccceEEecCCcceeccCccccCcccccEEEc
Q 045449          309 ADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGI--LPKSIGNFSLSLETILMANCSISGNIPQVVGNLSNLLVLEL  386 (823)
Q Consensus       309 ~~N~l~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~--~p~~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L  386 (823)
                      ++|...+.       ..+..+++|+.|++++|.+++.  .|..+..+ ++|++|++++|.+++ +|..+..+++|++|++
T Consensus       336 ~~n~~~~~-------~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~-~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l  406 (606)
T 3vq2_A          336 TMNKGSIS-------FKKVALPSLSYLDLSRNALSFSGCCSYSDLGT-NSLRHLDLSFNGAII-MSANFMGLEELQHLDF  406 (606)
T ss_dssp             ESCSSCEE-------CCCCCCTTCCEEECCSSCEEEEEECCHHHHCC-SCCCEEECCSCSEEE-ECCCCTTCTTCCEEEC
T ss_pred             cCCcCccc-------hhhccCCCCCEEECcCCccCCCcchhhhhccC-CcccEeECCCCcccc-chhhccCCCCCCeeEC
Confidence            88855443       2567899999999999999977  48888888 799999999999986 5688999999999999


Q ss_pred             ccCcCCCCch-hcccccCCCCEEEccCCCCCCcchHhhhcCCCCCEEEcccCcCcc-cccccccCCCCCCeEeccCCccc
Q 045449          387 GGNNLTGPIP-VTFSQLQTLQAFDLTRNKLAGPITDELCHLARLHSLVLQGNKFSG-SIPSCLGNLTSVRVLYLGLNIFT  464 (823)
Q Consensus       387 s~N~l~g~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g-~~p~~~~~l~~L~~L~Ls~N~l~  464 (823)
                      ++|++++..| ..+..+++|++|++++|++++..|..+.++++|++|++++|.+++ .+|..++.+++|+.|+|++|+++
T Consensus       407 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~  486 (606)
T 3vq2_A          407 QHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLE  486 (606)
T ss_dssp             TTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCC
T ss_pred             CCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCC
Confidence            9999998887 689999999999999999999999999999999999999999998 47999999999999999999999


Q ss_pred             cccchhhhccCCCcEEeccccccccccCccccCCCCCcEEEcccCCCCCCCCCcccCccCCCCCCCCCCCcccccCCccc
Q 045449          465 SVLSSTIWNLKDILFIDVSSNFLDGPLSLDIGNLKVVIGLDFSRNNLSGDIPITIGEGEIPRGGPFANLTAKSFMGNELL  544 (823)
Q Consensus       465 ~~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~ip~~~~~g~ip~~~~~~~~~~~~~~~n~~~  544 (823)
                      +.+|..+..+++|+.|++++|++++.+|..+++++.|+.||+++|+++ .+|..+.  ..|     ..+....+.+|++.
T Consensus       487 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~--~l~-----~~L~~l~l~~N~~~  558 (606)
T 3vq2_A          487 QISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQ--HFP-----KSLAFFNLTNNSVA  558 (606)
T ss_dssp             EECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGG--GSC-----TTCCEEECCSCCCC
T ss_pred             ccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHh--hhc-----ccCcEEEccCCCcc
Confidence            999999999999999999999999999999999999999999999999 5665542  122     24677889999999


Q ss_pred             CCCCC
Q 045449          545 CGLPD  549 (823)
Q Consensus       545 c~~~~  549 (823)
                      |+.+.
T Consensus       559 c~c~~  563 (606)
T 3vq2_A          559 CICEH  563 (606)
T ss_dssp             CSSTT
T ss_pred             cCCcc
Confidence            97553

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=8.9e-54  Score=504.64  Aligned_cols=450  Identities=20%  Similarity=0.176  Sum_probs=407.9

Q ss_pred             CcEEEEEcCCCCCccccCcccCCCCCCcEEEccCCCCCCCCCCCCCCCCCCCEEECCCCcCcCCCchhhhcCCCCcEEec
Q 045449           52 HRVIGLNISSFNLQGTITPQLGNLSSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQLFGSLSSFIFNMSSMTTIDL  131 (823)
Q Consensus        52 ~~v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  131 (823)
                      .+++.|+|++|.+.+..|.+|+++++|++|+|++|++++..|..|+++++|++|+|++|.+++..|..|+++++|++|+|
T Consensus        57 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L  136 (606)
T 3t6q_A           57 INLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYL  136 (606)
T ss_dssp             TTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEEC
T ss_pred             ccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEEC
Confidence            47899999999999988999999999999999999999999999999999999999999999888899999999999999


Q ss_pred             ccccccCccCccccCCCCCCccccccceeeeccceeeccCccccccchhhH--HHHHhhcCCCcccCCcccCCc------
Q 045449          132 SINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEIGNLTKLK--EIISTITNSTVCEIPREIGNL------  203 (823)
Q Consensus       132 s~N~l~~~~p~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~--~L~~l~~n~~~~~ip~~l~~l------  203 (823)
                      ++|++++..+..+       ..+++|++|+|++|++++..|..|+.+++|+  .|. +.+|.+.+..|..+...      
T Consensus       137 ~~n~l~~~~~~~~-------~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~-l~~n~l~~~~~~~~~~~~L~~L~  208 (606)
T 3t6q_A          137 GSNHISSIKLPKG-------FPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLN-LNGNDIAGIEPGAFDSAVFQSLN  208 (606)
T ss_dssp             CSSCCCCCCCCTT-------CCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEE-CTTCCCCEECTTTTTTCEEEEEE
T ss_pred             CCCcccccCcccc-------cCCcccCEEEcccCcccccChhhhhhhcccceeEEe-cCCCccCccChhHhhhccccccc
Confidence            9999986332222       3489999999999999988888899888887  553 77788877766655431      


Q ss_pred             ---------------------------------------------chhhhhccccccccCCccccccCCCCCcEEEccCC
Q 045449          204 ---------------------------------------------PYLARLALATNNLVGVVPVTIFNMSALKEISLLNN  238 (823)
Q Consensus       204 ---------------------------------------------~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N  238 (823)
                                                                   .+|+.|++++|++++..+..|.++++|++|++++|
T Consensus       209 l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  288 (606)
T 3t6q_A          209 FGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTAT  288 (606)
T ss_dssp             CTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTS
T ss_pred             cCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCC
Confidence                                                         16888999999999998889999999999999999


Q ss_pred             cccccCCcccccCCCCccEEEeeccccccccCccccCCCCCCeEEeecccccccCCC-ccCCCcccCcccccCccccCCC
Q 045449          239 SLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSITNSSKLSDLELGENLFSGFIPN-TIGNLRNLEFGNIADNYLTSST  317 (823)
Q Consensus       239 ~l~g~lp~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~L~~N~l~~~~  317 (823)
                      .++ .+|..+.. +++|++|++++|++++..|..+.++++|++|++++|.+.+.+|. .+..+++|++|++++|.+++..
T Consensus       289 ~l~-~lp~~l~~-l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~  366 (606)
T 3t6q_A          289 HLS-ELPSGLVG-LSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSD  366 (606)
T ss_dssp             CCS-CCCSSCCS-CTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEE
T ss_pred             ccC-CCChhhcc-cccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCcccccc
Confidence            998 89988765 99999999999999998899999999999999999999977665 4999999999999999998762


Q ss_pred             CcccccccccCCCCceEEEeecCCCCccCCccccccccccceEEecCCcceeccCcc-ccCcccccEEEcccCcCCCCch
Q 045449          318 PELSFLSSLTNCKKLKVLIVTGNPLDGILPKSIGNFSLSLETILMANCSISGNIPQV-VGNLSNLLVLELGGNNLTGPIP  396 (823)
Q Consensus       318 ~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~p~~-~~~l~~L~~L~Ls~N~l~g~~p  396 (823)
                      .   .+..+.++++|+.|++++|.+.+..|..+..+ ++|++|++++|.+++..|.. +..+++|++|++++|.+++..|
T Consensus       367 ~---~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  442 (606)
T 3t6q_A          367 C---CNLQLRNLSHLQSLNLSYNEPLSLKTEAFKEC-PQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSE  442 (606)
T ss_dssp             E---STTTTTTCTTCCEEECCSCSCEEECTTTTTTC-TTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCT
T ss_pred             C---cchhcccCCCCCEEECCCCcCCcCCHHHhcCC-ccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCH
Confidence            1   14578999999999999999999999999998 79999999999999887654 8999999999999999999999


Q ss_pred             hcccccCCCCEEEccCCCCCCc---chHhhhcCCCCCEEEcccCcCcccccccccCCCCCCeEeccCCccccccchhhhc
Q 045449          397 VTFSQLQTLQAFDLTRNKLAGP---ITDELCHLARLHSLVLQGNKFSGSIPSCLGNLTSVRVLYLGLNIFTSVLSSTIWN  473 (823)
Q Consensus       397 ~~~~~l~~L~~L~Ls~N~l~~~---~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~  473 (823)
                      ..+..+++|++|++++|++++.   .+..+..+++|+.|+|++|++++..|..|.++++|+.|+|++|++++.+|..+..
T Consensus       443 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~  522 (606)
T 3t6q_A          443 QLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSH  522 (606)
T ss_dssp             TTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTT
T ss_pred             HHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCc
Confidence            9999999999999999999873   3356899999999999999999999999999999999999999999999999999


Q ss_pred             cCCCcEEeccccccccccCccccCCCCCcEEEcccCCCCCCCC
Q 045449          474 LKDILFIDVSSNFLDGPLSLDIGNLKVVIGLDFSRNNLSGDIP  516 (823)
Q Consensus       474 l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~ip  516 (823)
                      ++.| .||+++|.+++..|..+..++.|+.|++++|++++..+
T Consensus       523 l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  564 (606)
T 3t6q_A          523 LKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS  564 (606)
T ss_dssp             CCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred             cccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence            9999 99999999999999999999999999999999998766

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=2.1e-51  Score=484.38  Aligned_cols=442  Identities=16%  Similarity=0.134  Sum_probs=392.7

Q ss_pred             CcEEEEEcCCCCCccccCcccCCCCCCcEEEccCCCCCCCCCCCCCCCCCCCEEECCCCcCcCCCchhhhcCCCCcEEec
Q 045449           52 HRVIGLNISSFNLQGTITPQLGNLSSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQLFGSLSSFIFNMSSMTTIDL  131 (823)
Q Consensus        52 ~~v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  131 (823)
                      .+++.|+|++|.+++..|.+|.++++|++|+|++|.|++..|..|+++++|++|+|++|.+++..+..|+++++|++|+|
T Consensus        56 ~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  135 (606)
T 3vq2_A           56 SELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNV  135 (606)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEEC
T ss_pred             ccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeC
Confidence            47999999999999988899999999999999999999999999999999999999999999888899999999999999


Q ss_pred             ccccccC-ccCccccCCCCCCccccccceeeeccceeeccCccccccchhhH----HHHHhhcCCCcccCCcccCCcchh
Q 045449          132 SINRLSG-ELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEIGNLTKLK----EIISTITNSTVCEIPREIGNLPYL  206 (823)
Q Consensus       132 s~N~l~~-~~p~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~----~L~~l~~n~~~~~ip~~l~~l~~L  206 (823)
                      ++|++++ .+|..+       +++++|++|+|++|++++..|..|+.+++|+    ++. +..|.+.+..+..+... +|
T Consensus       136 ~~n~l~~~~lp~~~-------~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~-l~~n~l~~~~~~~~~~~-~L  206 (606)
T 3vq2_A          136 AHNFIHSCKLPAYF-------SNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLD-MSLNPIDFIQDQAFQGI-KL  206 (606)
T ss_dssp             CSSCCCCCCCCGGG-------GTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEE-CTTCCCCEECTTTTTTC-EE
T ss_pred             CCCcccceechHhH-------hhcCCCCEEEccCCcceecChhhhhhhhccccccceee-ccCCCcceeCcccccCc-ee
Confidence            9999985 455555       8999999999999999998898899888776    353 66777765555555544 88


Q ss_pred             hhhcccccccc----------------------------------------------------------CCccccccCCC
Q 045449          207 ARLALATNNLV----------------------------------------------------------GVVPVTIFNMS  228 (823)
Q Consensus       207 ~~L~Ls~N~l~----------------------------------------------------------~~~p~~~~~l~  228 (823)
                      +.|++++|.++                                                          +.+|. +..++
T Consensus       207 ~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~  285 (606)
T 3vq2_A          207 HELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLA  285 (606)
T ss_dssp             EEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGT
T ss_pred             eeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccc-cccCC
Confidence            88888888654                                                          33343 67789


Q ss_pred             CCcEEEccCCcccccCCcccccCCCCccEEEeeccccccccCccccCCCCCCeEEeecccccccCCCccCCCcccCcccc
Q 045449          229 ALKEISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSITNSSKLSDLELGENLFSGFIPNTIGNLRNLEFGNI  308 (823)
Q Consensus       229 ~L~~L~Ls~N~l~g~lp~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  308 (823)
                      +|+.|++++|.++ .+| .+. .+++|++|++++|++ +.+| .+ .+++|++|++++|...+.+  .+..+++|++|++
T Consensus       286 ~L~~L~l~~~~~~-~l~-~l~-~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l  357 (606)
T 3vq2_A          286 NVSAMSLAGVSIK-YLE-DVP-KHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDL  357 (606)
T ss_dssp             TCSEEEEESCCCC-CCC-CCC-TTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEEC
T ss_pred             CCCEEEecCccch-hhh-hcc-ccccCCEEEcccccC-cccc-cC-CCCccceeeccCCcCccch--hhccCCCCCEEEC
Confidence            9999999999997 677 444 489999999999999 6888 45 9999999999999766544  6789999999999


Q ss_pred             cCccccCCCCcccccccccCCCCceEEEeecCCCCccCCccccccccccceEEecCCcceeccC-ccccCcccccEEEcc
Q 045449          309 ADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGILPKSIGNFSLSLETILMANCSISGNIP-QVVGNLSNLLVLELG  387 (823)
Q Consensus       309 ~~N~l~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~Ls  387 (823)
                      ++|.+++...   .+..+..+++|+.|++++|.+++ +|..+..+ ++|++|++++|++++..| ..+..+++|++|+++
T Consensus       358 s~n~l~~~~~---~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~  432 (606)
T 3vq2_A          358 SRNALSFSGC---CSYSDLGTNSLRHLDLSFNGAII-MSANFMGL-EELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDIS  432 (606)
T ss_dssp             CSSCEEEEEE---CCHHHHCCSCCCEEECCSCSEEE-ECCCCTTC-TTCCEEECTTSEEESTTTTTTTTTCTTCCEEECT
T ss_pred             cCCccCCCcc---hhhhhccCCcccEeECCCCcccc-chhhccCC-CCCCeeECCCCccCCccChhhhhccccCCEEECc
Confidence            9999987521   24678899999999999999986 56888888 799999999999999888 789999999999999


Q ss_pred             cCcCCCCchhcccccCCCCEEEccCCCCCC-cchHhhhcCCCCCEEEcccCcCcccccccccCCCCCCeEeccCCccccc
Q 045449          388 GNNLTGPIPVTFSQLQTLQAFDLTRNKLAG-PITDELCHLARLHSLVLQGNKFSGSIPSCLGNLTSVRVLYLGLNIFTSV  466 (823)
Q Consensus       388 ~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~  466 (823)
                      +|++++.+|..+..+++|++|++++|++++ .+|..|..+++|+.|+|++|++++..|..|.++++|+.|+|++|++++.
T Consensus       433 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~  512 (606)
T 3vq2_A          433 YTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFL  512 (606)
T ss_dssp             TSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCE
T ss_pred             CCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCc
Confidence            999999999999999999999999999998 4788899999999999999999999999999999999999999999999


Q ss_pred             cchhhhccCCCcEEeccccccccccCccccCCC-CCcEEEcccCCCCCCCCC
Q 045449          467 LSSTIWNLKDILFIDVSSNFLDGPLSLDIGNLK-VVIGLDFSRNNLSGDIPI  517 (823)
Q Consensus       467 ~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~-~L~~L~ls~N~l~g~ip~  517 (823)
                      +|..+..+++|+.||+++|+++ .+|..+..++ .|+.|++++|++.+..+.
T Consensus       513 ~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~  563 (606)
T 3vq2_A          513 DSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEH  563 (606)
T ss_dssp             EGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred             CHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCcc
Confidence            9999999999999999999999 6777799987 699999999999987664

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=2.7e-51  Score=477.62  Aligned_cols=481  Identities=19%  Similarity=0.217  Sum_probs=394.5

Q ss_pred             CccceeeeeCCC-----------CCcEEEEEcCCCCCccccCcccCCCCCCcEEEccCCCCCCCCCCCCCCCCCCCEEEC
Q 045449           39 VCIWIGITCDVN-----------SHRVIGLNISSFNLQGTITPQLGNLSSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDF  107 (823)
Q Consensus        39 ~c~w~gv~c~~~-----------~~~v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L  107 (823)
                      .|.|.|| ||..           ..+++.|+|++|++++..|.++.++++|++|+|++|+|++..|.+|+++++|++|||
T Consensus         3 ~C~~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L   81 (549)
T 2z81_A            3 SCDASGV-CDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDL   81 (549)
T ss_dssp             EECTTSE-EECTTSCCSSCCSCCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred             cCCCCce-EECCCCccccccccCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEEC
Confidence            4999998 8743           137899999999999988899999999999999999999988999999999999999


Q ss_pred             CCCcCcCCCchhhhcCCCCcEEecccccccCc-cCccccCCCCCCccccccceeeeccceeeccCc-cccccchhhHHHH
Q 045449          108 SDNQLFGSLSSFIFNMSSMTTIDLSINRLSGE-LPANICKIPSTLSKCKQLEELNLGFNNLSGAIP-KEIGNLTKLKEII  185 (823)
Q Consensus       108 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~  185 (823)
                      ++|++++..|..|+++++|++|+|++|++++. +|.       .|+++++|++|++++|++.+.+| ..|.++++|++|.
T Consensus        82 s~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-------~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~  154 (549)
T 2z81_A           82 SDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTS-------LFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELE  154 (549)
T ss_dssp             TTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSC-------SCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEE
T ss_pred             CCCccCccCHHHhccCCCCcEEECCCCcccccchhh-------hhhccCCccEEECCCCccccccCHhhhhcccccCeee
Confidence            99999999999999999999999999999852 333       45899999999999999555555 6899999999886


Q ss_pred             HhhcCCCcccCCcccCCcchhhhhccccccccCCccccccCCCCCcEEEccCCcccccC--CcccccCCCCccEEEeecc
Q 045449          186 STITNSTVCEIPREIGNLPYLARLALATNNLVGVVPVTIFNMSALKEISLLNNSLSGSL--PSRIDLSLPNVETLNLGIN  263 (823)
Q Consensus       186 ~l~~n~~~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~l--p~~~~~~l~~L~~L~Ls~N  263 (823)
                       +.+|.+.+.+|..++.+++|++|+++.|.+....+..+..+++|++|++++|.+++..  |..+...+++|+.|++++|
T Consensus       155 -L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n  233 (549)
T 2z81_A          155 -IKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGS  233 (549)
T ss_dssp             -EEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESC
T ss_pred             -ccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceecccc
Confidence             8889999999999999999999999999987543334457899999999999998632  3334445789999999999


Q ss_pred             ccccccCc----cccCCCCCCeEEeecccccccC------CCccCCCcccCcccccCccccCCCCcccccccccCCCCce
Q 045449          264 SFSGTIPS----SITNSSKLSDLELGENLFSGFI------PNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLK  333 (823)
Q Consensus       264 ~l~~~~p~----~~~~l~~L~~L~Ls~N~l~~~~------p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~l~~L~  333 (823)
                      .+++..+.    .+..+++|+.|++++|.+.+..      ...+..+.+|+.|++.++.+............+...++|+
T Consensus       234 ~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~  313 (549)
T 2z81_A          234 VLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVK  313 (549)
T ss_dssp             EEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCC
T ss_pred             ccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccce
Confidence            99875543    4467789999999999988742      2345678889999998888765321111122234467899


Q ss_pred             EEEeecCCCCccCCcccc-ccccccceEEecCCcceeccC---ccccCcccccEEEcccCcCCCCch--hcccccCCCCE
Q 045449          334 VLIVTGNPLDGILPKSIG-NFSLSLETILMANCSISGNIP---QVVGNLSNLLVLELGGNNLTGPIP--VTFSQLQTLQA  407 (823)
Q Consensus       334 ~L~Ls~N~l~~~~p~~~~-~~~~~L~~L~L~~N~l~~~~p---~~~~~l~~L~~L~Ls~N~l~g~~p--~~~~~l~~L~~  407 (823)
                      .|++++|.+. .+|..+. .+ ++|++|++++|++++.+|   ..++.+++|++|+|++|++++..+  ..+..+++|++
T Consensus       314 ~L~l~~n~l~-~ip~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~  391 (549)
T 2z81_A          314 RITVENSKVF-LVPCSFSQHL-KSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTS  391 (549)
T ss_dssp             EEEEESSCCC-CCCHHHHHHC-TTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCE
T ss_pred             EEEeccCccc-cCCHHHHhcC-ccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCE
Confidence            9999999997 5677664 56 799999999999998774   447889999999999999986543  56889999999


Q ss_pred             EEccCCCCCCcchHhhhcCCCCCEEEcccCcCcccccccccCCCCCCeEeccCCccccccchhhhccCCCcEEecccccc
Q 045449          408 FDLTRNKLAGPITDELCHLARLHSLVLQGNKFSGSIPSCLGNLTSVRVLYLGLNIFTSVLSSTIWNLKDILFIDVSSNFL  487 (823)
Q Consensus       408 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l  487 (823)
                      |+|++|+++ .+|..+..+++|++|+|++|++++ +|..+.  ++|++|+|++|++++.+    ..+++|++|||++|++
T Consensus       392 L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~-l~~~~~--~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l  463 (549)
T 2z81_A          392 LDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRV-VKTCIP--QTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKL  463 (549)
T ss_dssp             EECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSC-CCTTSC--TTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCC
T ss_pred             EECCCCCCc-cCChhhcccccccEEECCCCCccc-ccchhc--CCceEEECCCCChhhhc----ccCChhcEEECCCCcc
Confidence            999999999 678888899999999999999984 454442  68999999999999864    5789999999999999


Q ss_pred             ccccCccccCCCCCcEEEcccCCCCCCCCCcccCccCCCCCCCCCCCcccccCCcccCCCC
Q 045449          488 DGPLSLDIGNLKVVIGLDFSRNNLSGDIPITIGEGEIPRGGPFANLTAKSFMGNELLCGLP  548 (823)
Q Consensus       488 ~g~~p~~~~~l~~L~~L~ls~N~l~g~ip~~~~~g~ip~~~~~~~~~~~~~~~n~~~c~~~  548 (823)
                      + .+|. ...++.|++||+++|++++.+|..+.        .+..+..+++.+|++.|..|
T Consensus       464 ~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~--------~l~~L~~L~l~~N~~~~~~~  514 (549)
T 2z81_A          464 K-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFD--------RLTSLQKIWLHTNPWDCSCP  514 (549)
T ss_dssp             S-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGG--------GCTTCCEEECCSSCBCCCHH
T ss_pred             C-cCCC-cccCccCCEEecCCCccCCcCHHHHh--------cCcccCEEEecCCCccCCCc
Confidence            8 6776 56799999999999999977666553        35567788999999988643

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=7.2e-51  Score=476.19  Aligned_cols=467  Identities=19%  Similarity=0.168  Sum_probs=326.9

Q ss_pred             CcEEEEEcCCCCCccccCcccCCCCCCcEEEccCCCCCCCCCCCCCCCCCCCEEECCCCcCcCCCchhhhcCCCCcEEec
Q 045449           52 HRVIGLNISSFNLQGTITPQLGNLSSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQLFGSLSSFIFNMSSMTTIDL  131 (823)
Q Consensus        52 ~~v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  131 (823)
                      .+++.|||++|++++..+.+|.++++|++|||++|+|++..|..|.++++|++|+|++|.+++..|.+|+++++|++|+|
T Consensus        28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  107 (570)
T 2z63_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (570)
T ss_dssp             SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence            47899999999999888889999999999999999999888899999999999999999999988999999999999999


Q ss_pred             ccccccCccCccccCCCCCCccccccceeeeccceeec-cCccccccchhhHHHHHhhcCCCcccCCcccCCcchh----
Q 045449          132 SINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSG-AIPKEIGNLTKLKEIISTITNSTVCEIPREIGNLPYL----  206 (823)
Q Consensus       132 s~N~l~~~~p~~~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~~L~~l~~n~~~~~ip~~l~~l~~L----  206 (823)
                      ++|++++..+..       |+++++|++|+|++|.+++ .+|..|+++++|++|. +.+|.+.+..|..++.+++|    
T Consensus       108 ~~n~l~~l~~~~-------~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~-l~~n~l~~~~~~~~~~l~~L~~~~  179 (570)
T 2z63_A          108 VETNLASLENFP-------IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD-LSSNKIQSIYCTDLRVLHQMPLLN  179 (570)
T ss_dssp             TTSCCCCSTTCS-------CTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEE-CTTSCCCEECGGGGHHHHTCTTCC
T ss_pred             cccccccCCCcc-------ccccccccEEecCCCccceecChhhhcccCCCCEEe-CcCCccceecHHHccchhccchhh
Confidence            999998543323       4899999999999999987 4799999999999986 88888888878889988888    


Q ss_pred             hhhccccccccCCccccccCCCCCcEEEccCCcccc------------------------------cCCcccccCCC--C
Q 045449          207 ARLALATNNLVGVVPVTIFNMSALKEISLLNNSLSG------------------------------SLPSRIDLSLP--N  254 (823)
Q Consensus       207 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g------------------------------~lp~~~~~~l~--~  254 (823)
                      +.|++++|.+++..|..+... +|+.|++++|....                              .++...+..++  .
T Consensus       180 ~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~  258 (570)
T 2z63_A          180 LSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLT  258 (570)
T ss_dssp             CEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSE
T ss_pred             hhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccc
Confidence            889999999998888887766 89999999883221                              11111111111  2


Q ss_pred             ccEEEeecc-ccccccCccccCCCCCCeEEeecccccccCCCccCCCcccCcccccCccccCCCCcccccccccCCCCce
Q 045449          255 VETLNLGIN-SFSGTIPSSITNSSKLSDLELGENLFSGFIPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLK  333 (823)
Q Consensus       255 L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~l~~L~  333 (823)
                      ++.+++++| .+.+.+|..+..+++|++|++++|.++ .+|..+..+ +|+.|++++|.++..+      .  ..+++|+
T Consensus       259 l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~~l~------~--~~l~~L~  328 (570)
T 2z63_A          259 IEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFGQFP------T--LKLKSLK  328 (570)
T ss_dssp             EEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCSSCC------B--CBCSSCC
T ss_pred             hhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCcccccC------c--ccccccC
Confidence            344555555 556666666666667777777777666 355566666 6667777666666331      1  3455666


Q ss_pred             EEEeecCCCCccCCccccccccccceEEecCCcceecc--CccccCcccccEEEcccCcCCCCchhcccccCCCCEEEcc
Q 045449          334 VLIVTGNPLDGILPKSIGNFSLSLETILMANCSISGNI--PQVVGNLSNLLVLELGGNNLTGPIPVTFSQLQTLQAFDLT  411 (823)
Q Consensus       334 ~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~--p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls  411 (823)
                      .|++++|.+.+..+.  ..+ ++|++|++++|++++..  |..+.++++|++|++++|++++..+. +..+++|++|+++
T Consensus       329 ~L~l~~n~~~~~~~~--~~~-~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~  404 (570)
T 2z63_A          329 RLTFTSNKGGNAFSE--VDL-PSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQ  404 (570)
T ss_dssp             EEEEESCBSCCBCCC--CBC-TTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECT
T ss_pred             EEeCcCCcccccccc--ccC-CCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEcc
Confidence            666666666655544  333 46666666666666543  55556666666666666666643333 6666666666666


Q ss_pred             CCCCCCcch-HhhhcCCCCCEEEcccCcCcccccccccCCCCCCeEeccCCccc-cccchhhhccCCCcEEecccccccc
Q 045449          412 RNKLAGPIT-DELCHLARLHSLVLQGNKFSGSIPSCLGNLTSVRVLYLGLNIFT-SVLSSTIWNLKDILFIDVSSNFLDG  489 (823)
Q Consensus       412 ~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~LdLs~N~l~g  489 (823)
                      +|++++..| ..+.++++|++|++++|.+++.+|..+.++++|++|+|++|.++ +.+|..+..+++|+.|++++|.+++
T Consensus       405 ~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~  484 (570)
T 2z63_A          405 HSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ  484 (570)
T ss_dssp             TSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCE
T ss_pred             CCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCcccc
Confidence            666665544 34556666666666666666666666666666666666666665 4566666666666666666666666


Q ss_pred             ccCccccCCCCCcEEEcccCCCCCCCCCcccCccCCCCCCCCCCCcccccCCcccCCCCC
Q 045449          490 PLSLDIGNLKVVIGLDFSRNNLSGDIPITIGEGEIPRGGPFANLTAKSFMGNELLCGLPD  549 (823)
Q Consensus       490 ~~p~~~~~l~~L~~L~ls~N~l~g~ip~~~~~g~ip~~~~~~~~~~~~~~~n~~~c~~~~  549 (823)
                      ..|..+..++.|+.|++++|++++.+|..+        ..+..+....+.+|++.|..|.
T Consensus       485 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--------~~l~~L~~L~l~~N~~~~~~~~  536 (570)
T 2z63_A          485 LSPTAFNSLSSLQVLNMASNQLKSVPDGIF--------DRLTSLQKIWLHTNPWDCSCPR  536 (570)
T ss_dssp             ECTTTTTTCTTCCEEECCSSCCSCCCTTTT--------TTCTTCCEEECCSSCBCCCTTT
T ss_pred             CChhhhhcccCCCEEeCCCCcCCCCCHHHh--------hcccCCcEEEecCCcccCCCcc
Confidence            666666666666666666666664433332        1234455556666666665543

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=3.1e-50  Score=480.90  Aligned_cols=446  Identities=21%  Similarity=0.211  Sum_probs=301.0

Q ss_pred             EEEcCCCCCccccCcccCCCCCCcEEEccCCCCCCCCCCCCCCCCCCCEEECCCCcCcCCCchhhhcCCCCcEEeccccc
Q 045449           56 GLNISSFNLQGTITPQLGNLSSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQLFGSLSSFIFNMSSMTTIDLSINR  135 (823)
Q Consensus        56 ~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~  135 (823)
                      .+|+++++++ .+|..+.  +++++|||++|+|++..+..|.++++|++|||++|.+++..|.+|+++++|++|+|++|+
T Consensus         8 ~~~cs~~~L~-~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~   84 (680)
T 1ziw_A            8 VADCSHLKLT-QVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE   84 (680)
T ss_dssp             EEECCSSCCS-SCCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSC
T ss_pred             eeECCCCCcc-ccccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCc
Confidence            4666777776 5676664  799999999999998888899999999999999999999999999999999999999999


Q ss_pred             ccCccCccccCCCCCCccccccceeeeccceeeccCccccccchhhHHHHHhhcCCCcccCCcccCCcchhhhhcccccc
Q 045449          136 LSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEIGNLTKLKEIISTITNSTVCEIPREIGNLPYLARLALATNN  215 (823)
Q Consensus       136 l~~~~p~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~~l~~n~~~~~ip~~l~~l~~L~~L~Ls~N~  215 (823)
                      +++..+.       .|+++++|++|+|++|++++..|..|+++++|++|. +..|.+.+..|..++++++|++|++++|+
T Consensus        85 l~~l~~~-------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~-Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~  156 (680)
T 1ziw_A           85 LSQLSDK-------TFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLD-LSHNGLSSTKLGTQVQLENLQELLLSNNK  156 (680)
T ss_dssp             CCCCCTT-------TTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEE-CCSSCCSCCCCCSSSCCTTCCEEECCSSC
T ss_pred             cCccChh-------hhccCCCCCEEECCCCccCccChhHccccCCCCEEE-CCCCcccccCchhhcccccCCEEEccCCc
Confidence            9843222       358999999999999999987788999999999996 88999999999999999999999999999


Q ss_pred             ccCCcccccc--CCCCCcEEEccCCcccccCCccccc--------------------------CCCCccEEEeecccccc
Q 045449          216 LVGVVPVTIF--NMSALKEISLLNNSLSGSLPSRIDL--------------------------SLPNVETLNLGINSFSG  267 (823)
Q Consensus       216 l~~~~p~~~~--~l~~L~~L~Ls~N~l~g~lp~~~~~--------------------------~l~~L~~L~Ls~N~l~~  267 (823)
                      +++..+..+.  .+++|++|++++|.+++..|..+..                          ..++|+.|++++|++++
T Consensus       157 l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~  236 (680)
T 1ziw_A          157 IQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLST  236 (680)
T ss_dssp             CCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCE
T ss_pred             ccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccc
Confidence            9998887664  5689999999999998666543321                          12456677777777777


Q ss_pred             ccCccccCCCC--CCeEEeecccccccCCCccCCCcccCcccccCccccCCCCcc------------------------c
Q 045449          268 TIPSSITNSSK--LSDLELGENLFSGFIPNTIGNLRNLEFGNIADNYLTSSTPEL------------------------S  321 (823)
Q Consensus       268 ~~p~~~~~l~~--L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~------------------------~  321 (823)
                      ..|..+.+++.  |++|+|++|++++..|..|+.+++|++|++++|++++..+..                        .
T Consensus       237 ~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~  316 (680)
T 1ziw_A          237 TSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLAS  316 (680)
T ss_dssp             ECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------
T ss_pred             cChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhccccccc
Confidence            77777766644  777777777777777777777777777777777776652210                        0


Q ss_pred             ccc----cccCCCCceEEEeecCCCCccCCccccccccccceEEecCCccee--ccCccccCc--ccccEEEcccCcCCC
Q 045449          322 FLS----SLTNCKKLKVLIVTGNPLDGILPKSIGNFSLSLETILMANCSISG--NIPQVVGNL--SNLLVLELGGNNLTG  393 (823)
Q Consensus       322 ~~~----~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~--~~p~~~~~l--~~L~~L~Ls~N~l~g  393 (823)
                      ++.    .+..+++|+.|++++|.+++..|..|..+ ++|++|++++|.+++  ..+..|..+  ++|+.|++++|++++
T Consensus       317 lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~  395 (680)
T 1ziw_A          317 LPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGL-INLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISK  395 (680)
T ss_dssp             CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTC-TTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCE
T ss_pred             ccccChhhcccCCCCCEEECCCCccCCCChhHhccc-cCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCe
Confidence            111    34445555555555555555555555544 345555444443221  111122221  244444444455554


Q ss_pred             CchhcccccCCCCEEEccCCCCCCcch-HhhhcCCCCCEEEcccCcCcccccccccCCCCCCeEeccCCccc--cccchh
Q 045449          394 PIPVTFSQLQTLQAFDLTRNKLAGPIT-DELCHLARLHSLVLQGNKFSGSIPSCLGNLTSVRVLYLGLNIFT--SVLSST  470 (823)
Q Consensus       394 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~--~~~p~~  470 (823)
                      ..|..|..+++|++|+|++|++++.+| ..|.++++|++|++++|++++..+..|..+++|+.|++++|.++  +.+|..
T Consensus       396 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~  475 (680)
T 1ziw_A          396 IESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSP  475 (680)
T ss_dssp             ECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCT
T ss_pred             EChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcc
Confidence            445555555555555555555554433 34555555555555555555555555555555555555555544  344555


Q ss_pred             hhccCCCcEEeccccccccccCccccCCCCCcEEEcccCCCCC
Q 045449          471 IWNLKDILFIDVSSNFLDGPLSLDIGNLKVVIGLDFSRNNLSG  513 (823)
Q Consensus       471 ~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g  513 (823)
                      +..+++|+.||+++|.+++..|..+..++.|++|++++|++++
T Consensus       476 ~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~  518 (680)
T 1ziw_A          476 FQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLAR  518 (680)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGG
T ss_pred             cccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccc
Confidence            5555555555555555555444555555555555555555553

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=1.4e-50  Score=493.96  Aligned_cols=442  Identities=20%  Similarity=0.198  Sum_probs=373.5

Q ss_pred             CcEEEEEcCCCCCcccc-CcccCCCCCCcEEEccCCCCCCCCCCCCCCCCCCCEEECCCCcCcCCCchh--hhcCCCCcE
Q 045449           52 HRVIGLNISSFNLQGTI-TPQLGNLSSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQLFGSLSSF--IFNMSSMTT  128 (823)
Q Consensus        52 ~~v~~L~L~~~~l~g~~-~~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~--~~~l~~L~~  128 (823)
                      .+++.|||++|...+.+ |.+|.++++|++|+|++|.|++..|..|+++++|++|+|++|.+++.+|..  |.++++|++
T Consensus        48 ~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~  127 (844)
T 3j0a_A           48 EQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTR  127 (844)
T ss_dssp             CSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCE
T ss_pred             ccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCE
Confidence            47899999999887777 677999999999999999999999999999999999999999999877665  999999999


Q ss_pred             EecccccccCccCccccCCCCCCccccccceeeeccceeeccCccccccc--hhhHHHHHhhcCCCcccCCcccCCcch-
Q 045449          129 IDLSINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEIGNL--TKLKEIISTITNSTVCEIPREIGNLPY-  205 (823)
Q Consensus       129 L~Ls~N~l~~~~p~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l--~~L~~L~~l~~n~~~~~ip~~l~~l~~-  205 (823)
                      |||++|.+++..+.      ..|+++++|++|+|++|.+++..|..+..+  ++|+.|. +..|.+.+.+|..++.+++ 
T Consensus       128 L~Ls~N~l~~~~~~------~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~-L~~n~l~~~~~~~~~~~~~~  200 (844)
T 3j0a_A          128 LDLSKNQIRSLYLH------PSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFS-LAANSLYSRVSVDWGKCMNP  200 (844)
T ss_dssp             EEEESCCCCCCCCC------GGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCE-ECCSBSCCCCCCCCCSSSCT
T ss_pred             EECCCCcccccccc------hhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEE-CCCCccccccccchhhcCCc
Confidence            99999999876443      225899999999999999999999998887  6787775 8888888888888777666 


Q ss_pred             -----hhhhccccccccCCccccccC--------------------------------------CCCCcEEEccCCcccc
Q 045449          206 -----LARLALATNNLVGVVPVTIFN--------------------------------------MSALKEISLLNNSLSG  242 (823)
Q Consensus       206 -----L~~L~Ls~N~l~~~~p~~~~~--------------------------------------l~~L~~L~Ls~N~l~g  242 (823)
                           |+.|++++|++++..|..+..                                      .++|++|+|++|.+++
T Consensus       201 ~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~  280 (844)
T 3j0a_A          201 FRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFS  280 (844)
T ss_dssp             TTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCE
T ss_pred             cccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccc
Confidence                 999999999887766654432                                      2679999999999986


Q ss_pred             cCCcccccCCCCccEEEeeccccccccCccccCCCCCCeEEeecccccccCCCccCCCcccCcccccCccccCCCCcccc
Q 045449          243 SLPSRIDLSLPNVETLNLGINSFSGTIPSSITNSSKLSDLELGENLFSGFIPNTIGNLRNLEFGNIADNYLTSSTPELSF  322 (823)
Q Consensus       243 ~lp~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~  322 (823)
                      ..|..+. .+++|++|+|++|++++..|..|.++++|++|+|++|++++..|..|..+++|++|++++|++++..     
T Consensus       281 ~~~~~~~-~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~-----  354 (844)
T 3j0a_A          281 LNSRVFE-TLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQ-----  354 (844)
T ss_dssp             ECSCCSS-SCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCC-----
T ss_pred             cChhhhh-cCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccC-----
Confidence            5555544 5999999999999999888999999999999999999999888999999999999999999998873     


Q ss_pred             cccccCCCCceEEEeecCCCCccCCccccccccccceEEecCCcce--------------------ecc-CccccCcccc
Q 045449          323 LSSLTNCKKLKVLIVTGNPLDGILPKSIGNFSLSLETILMANCSIS--------------------GNI-PQVVGNLSNL  381 (823)
Q Consensus       323 ~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~--------------------~~~-p~~~~~l~~L  381 (823)
                      +..|.++++|+.|+|++|.+++...     + ++|+.|++++|+++                    +.. +..+.++++|
T Consensus       355 ~~~~~~l~~L~~L~Ls~N~l~~i~~-----~-~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L  428 (844)
T 3j0a_A          355 DQTFKFLEKLQTLDLRDNALTTIHF-----I-PSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHL  428 (844)
T ss_dssp             SSCSCSCCCCCEEEEETCCSCCCSS-----C-CSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTC
T ss_pred             hhhhcCCCCCCEEECCCCCCCcccC-----C-CCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCcc
Confidence            3468888999999999998875321     2 34555555555544                    321 1224578999


Q ss_pred             cEEEcccCcCCCCchh-cccccCCCCEEEccCCCCC-----CcchHhhhcCCCCCEEEcccCcCcccccccccCCCCCCe
Q 045449          382 LVLELGGNNLTGPIPV-TFSQLQTLQAFDLTRNKLA-----GPITDELCHLARLHSLVLQGNKFSGSIPSCLGNLTSVRV  455 (823)
Q Consensus       382 ~~L~Ls~N~l~g~~p~-~~~~l~~L~~L~Ls~N~l~-----~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~  455 (823)
                      ++|+|++|++++..+. .+..+++|++|+|++|.++     +..+..|.++++|+.|+|++|+|++.+|..|.++++|+.
T Consensus       429 ~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  508 (844)
T 3j0a_A          429 QILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRG  508 (844)
T ss_dssp             CEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSE
T ss_pred             ceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhhe
Confidence            9999999999976544 4667899999999999997     445567889999999999999999999999999999999


Q ss_pred             EeccCCccccccchhhhccCCCcEEeccccccccccCccccCCCCCcEEEcccCCCCCCCCC
Q 045449          456 LYLGLNIFTSVLSSTIWNLKDILFIDVSSNFLDGPLSLDIGNLKVVIGLDFSRNNLSGDIPI  517 (823)
Q Consensus       456 L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~ip~  517 (823)
                      |+|++|++++.+|..+.  ++|+.|||++|++++.+|..+   ..|+.|++++|.+.+.++.
T Consensus       509 L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~---~~L~~l~l~~Np~~C~c~~  565 (844)
T 3j0a_A          509 LSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVF---VSLSVLDITHNKFICECEL  565 (844)
T ss_dssp             EEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCC---SSCCEEEEEEECCCCSSSC
T ss_pred             eECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHh---CCcCEEEecCCCccccccc
Confidence            99999999998877766  899999999999999999765   4788999999999987663

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=1.3e-51  Score=486.74  Aligned_cols=444  Identities=19%  Similarity=0.221  Sum_probs=384.6

Q ss_pred             CCCcEEEccCCCCCCCCCCCCCCCCCCCEEECCCCcC------cC------CCchhhhcCCCCcEEecccccccCccCcc
Q 045449           76 SSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQL------FG------SLSSFIFNMSSMTTIDLSINRLSGELPAN  143 (823)
Q Consensus        76 ~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l------~~------~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~  143 (823)
                      .+++.|+|++|.++|.+|++|++|++|++|||++|.+      .|      .+|...  +..|+ ++++.|.+.+.+|..
T Consensus        81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~  157 (636)
T 4eco_A           81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPRED  157 (636)
T ss_dssp             CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGG
T ss_pred             CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhh
Confidence            4689999999999999999999999999999999976      33      455544  56778 999999999988876


Q ss_pred             ccCC------------CCCCccccccceeeec--cceeeccCccccccchhhHHHHHhhcCCCccc--------------
Q 045449          144 ICKI------------PSTLSKCKQLEELNLG--FNNLSGAIPKEIGNLTKLKEIISTITNSTVCE--------------  195 (823)
Q Consensus       144 ~~~~------------p~~~~~l~~L~~L~Ls--~N~l~~~~p~~l~~l~~L~~L~~l~~n~~~~~--------------  195 (823)
                      +..+            +-.......++.+++.  +|+++| +|.+|+++++|++|. +..|.+.+.              
T Consensus       158 ~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~-Ls~n~l~~~~~~~~~~~~~~~~~  235 (636)
T 4eco_A          158 FSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFY-MGNSPFVAENICEAWENENSEYA  235 (636)
T ss_dssp             SCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEE-EESCCCCGGGBSSSCSCTTSHHH
T ss_pred             HHHHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEE-CcCCccccccccccccccccchh
Confidence            6311            0000122234444443  689999 999999999999996 899999996              


Q ss_pred             ---CCcccC--CcchhhhhccccccccCCccccccCCCCCcEEEccCCc-ccc-cCCccccc-----CCCCccEEEeecc
Q 045449          196 ---IPREIG--NLPYLARLALATNNLVGVVPVTIFNMSALKEISLLNNS-LSG-SLPSRIDL-----SLPNVETLNLGIN  263 (823)
Q Consensus       196 ---ip~~l~--~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~-l~g-~lp~~~~~-----~l~~L~~L~Ls~N  263 (823)
                         +|..++  ++++|++|+|++|++.+.+|..|.++++|++|+|++|+ ++| .+|..++.     .+++|++|+|++|
T Consensus       236 ~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n  315 (636)
T 4eco_A          236 QQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN  315 (636)
T ss_dssp             HHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS
T ss_pred             cccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCC
Confidence               999999  99999999999999999999999999999999999998 998 89988765     1389999999999


Q ss_pred             ccccccCc--cccCCCCCCeEEeecccccccCCCccCCCcccCcccccCccccCCCCcccccccccCCCC-ceEEEeecC
Q 045449          264 SFSGTIPS--SITNSSKLSDLELGENLFSGFIPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKK-LKVLIVTGN  340 (823)
Q Consensus       264 ~l~~~~p~--~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~l~~-L~~L~Ls~N  340 (823)
                      +++ .+|.  .++++++|++|++++|+++|.+| .|+.+++|++|++++|+++.      ++..+..+++ |+.|++++|
T Consensus       316 ~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~------lp~~l~~l~~~L~~L~Ls~N  387 (636)
T 4eco_A          316 NLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITE------IPANFCGFTEQVENLSFAHN  387 (636)
T ss_dssp             CCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEE------CCTTSEEECTTCCEEECCSS
T ss_pred             cCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCcccc------ccHhhhhhcccCcEEEccCC
Confidence            999 8998  99999999999999999999999 99999999999999999994      4567899999 999999999


Q ss_pred             CCCccCCccccccc-cccceEEecCCcceeccCcccc-------CcccccEEEcccCcCCCCchhcccccCCCCEEEccC
Q 045449          341 PLDGILPKSIGNFS-LSLETILMANCSISGNIPQVVG-------NLSNLLVLELGGNNLTGPIPVTFSQLQTLQAFDLTR  412 (823)
Q Consensus       341 ~l~~~~p~~~~~~~-~~L~~L~L~~N~l~~~~p~~~~-------~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~  412 (823)
                      .++ .+|..+.... .+|++|++++|.+++.+|..+.       .+++|++|+|++|++++..+..+..+++|++|+|++
T Consensus       388 ~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~  466 (636)
T 4eco_A          388 KLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMG  466 (636)
T ss_dssp             CCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCS
T ss_pred             cCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCC
Confidence            999 7888877652 3799999999999999999998       888999999999999954444567799999999999


Q ss_pred             CCCCCcchHh-hhcCC-------CCCEEEcccCcCccccccccc--CCCCCCeEeccCCccccccchhhhccCCCcEEec
Q 045449          413 NKLAGPITDE-LCHLA-------RLHSLVLQGNKFSGSIPSCLG--NLTSVRVLYLGLNIFTSVLSSTIWNLKDILFIDV  482 (823)
Q Consensus       413 N~l~~~~p~~-~~~l~-------~L~~L~Ls~N~l~g~~p~~~~--~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdL  482 (823)
                      |+++ .+|.. +..+.       +|+.|+|++|+++ .+|..+.  .+++|+.|+|++|++++ +|..+..+++|+.|+|
T Consensus       467 N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~L  543 (636)
T 4eco_A          467 NMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGI  543 (636)
T ss_dssp             SCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEEC
T ss_pred             CCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEEC
Confidence            9999 55554 33332       8999999999999 7888887  99999999999999999 8999999999999999


Q ss_pred             ------cccccccccCccccCCCCCcEEEcccCCCCCCCCCcccCccCCCCCCCCCCCcccccCCcccCCC
Q 045449          483 ------SSNFLDGPLSLDIGNLKVVIGLDFSRNNLSGDIPITIGEGEIPRGGPFANLTAKSFMGNELLCGL  547 (823)
Q Consensus       483 ------s~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~ip~~~~~g~ip~~~~~~~~~~~~~~~n~~~c~~  547 (823)
                            ++|.+.+.+|..+++++.|+.|++++|++ +.||..+.          ..+..+++.+|+..|-.
T Consensus       544 s~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~----------~~L~~L~Ls~N~l~~~~  603 (636)
T 4eco_A          544 RNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT----------PNISVLDIKDNPNISID  603 (636)
T ss_dssp             CSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC----------TTCCEEECCSCTTCEEE
T ss_pred             CCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh----------CcCCEEECcCCCCcccc
Confidence                  56889999999999999999999999999 77886642          46777889999887743

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=2.2e-49  Score=463.60  Aligned_cols=455  Identities=19%  Similarity=0.166  Sum_probs=384.5

Q ss_pred             EEcCCCCCccccCcccCCCCCCcEEEccCCCCCCCCCCCCCCCCCCCEEECCCCcCcCCCchhhhcCCCCcEEecccccc
Q 045449           57 LNISSFNLQGTITPQLGNLSSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQLFGSLSSFIFNMSSMTTIDLSINRL  136 (823)
Q Consensus        57 L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l  136 (823)
                      ++.++.+++ .+|..+.  +++++|||++|+|++..+.+|.++++|++|||++|.+++..|..|.++++|++|+|++|++
T Consensus        12 ~~c~~~~l~-~ip~~l~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l   88 (570)
T 2z63_A           12 YQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI   88 (570)
T ss_dssp             EECCSSCCS-SCCSSSC--SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred             EEeCCCCcc-ccCCCcc--ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcC
Confidence            444455555 4565443  5799999999999988899999999999999999999998899999999999999999999


Q ss_pred             cCccCccccCCCCCCccccccceeeeccceeeccCccccccchhhHHHHHhhcCCCcc-cCCcccCCcchhhhhcccccc
Q 045449          137 SGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEIGNLTKLKEIISTITNSTVC-EIPREIGNLPYLARLALATNN  215 (823)
Q Consensus       137 ~~~~p~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~~l~~n~~~~-~ip~~l~~l~~L~~L~Ls~N~  215 (823)
                      ++..|..|       .++++|++|+|++|++++..+..++++++|++|. +.+|.+.+ .+|..|+++++|++|++++|+
T Consensus        89 ~~~~~~~~-------~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~-L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~  160 (570)
T 2z63_A           89 QSLALGAF-------SGLSSLQKLVAVETNLASLENFPIGHLKTLKELN-VAHNLIQSFKLPEYFSNLTNLEHLDLSSNK  160 (570)
T ss_dssp             CEECTTTT-------TTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEE-CCSSCCCCCCCCGGGGGCTTCCEEECTTSC
T ss_pred             CccCHhhh-------cCccccccccccccccccCCCccccccccccEEe-cCCCccceecChhhhcccCCCCEEeCcCCc
Confidence            86555544       8999999999999999976666799999999986 78888877 579999999999999999999


Q ss_pred             ccCCccccccCCCCC----cEEEccCCcccccCCcccccCCCCccEEEeecccccc-ccC--------------------
Q 045449          216 LVGVVPVTIFNMSAL----KEISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSG-TIP--------------------  270 (823)
Q Consensus       216 l~~~~p~~~~~l~~L----~~L~Ls~N~l~g~lp~~~~~~l~~L~~L~Ls~N~l~~-~~p--------------------  270 (823)
                      +++..|..+..+++|    ++|++++|.+++..|.. +. ..+|++|++++|.... .+|                    
T Consensus       161 l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~-~~-~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~  238 (570)
T 2z63_A          161 IQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA-FK-EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFR  238 (570)
T ss_dssp             CCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTT-TT-TCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECC
T ss_pred             cceecHHHccchhccchhhhhcccCCCCceecCHHH-hc-cCcceeEecccccccccchhhhhcCccccceeeecccccc
Confidence            999888889988888    89999999999655544 43 3489999999884321 111                    


Q ss_pred             ----------ccccCCC--CCCeEEeecc-cccccCCCccCCCcccCcccccCccccCCCCcccccccccCCCCceEEEe
Q 045449          271 ----------SSITNSS--KLSDLELGEN-LFSGFIPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIV  337 (823)
Q Consensus       271 ----------~~~~~l~--~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~l~~L~~L~L  337 (823)
                                ..+..+.  .++.+++++| .+.+.+|..+..+++|+.|++++|.++..      +..+..+ +|+.|++
T Consensus       239 ~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l------~~~~~~~-~L~~L~l  311 (570)
T 2z63_A          239 NEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERV------KDFSYNF-GWQHLEL  311 (570)
T ss_dssp             CCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSC------CBCCSCC-CCSEEEE
T ss_pred             CchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhh------hhhhccC-CccEEee
Confidence                      1122222  2456777777 88889999999999999999999999864      4567777 9999999


Q ss_pred             ecCCCCccCCccccccccccceEEecCCcceeccCccccCcccccEEEcccCcCCCCc--hhcccccCCCCEEEccCCCC
Q 045449          338 TGNPLDGILPKSIGNFSLSLETILMANCSISGNIPQVVGNLSNLLVLELGGNNLTGPI--PVTFSQLQTLQAFDLTRNKL  415 (823)
Q Consensus       338 s~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~--p~~~~~l~~L~~L~Ls~N~l  415 (823)
                      ++|.+. .+|.  ..+ ++|++|++++|.+.+..+.  ..+++|++|++++|++++..  |..+..+++|++|++++|++
T Consensus       312 ~~n~~~-~l~~--~~l-~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l  385 (570)
T 2z63_A          312 VNCKFG-QFPT--LKL-KSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGV  385 (570)
T ss_dssp             ESCBCS-SCCB--CBC-SSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSE
T ss_pred             ccCccc-ccCc--ccc-cccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcc
Confidence            999998 5565  345 6899999999999887766  78999999999999999754  78899999999999999999


Q ss_pred             CCcchHhhhcCCCCCEEEcccCcCccccc-ccccCCCCCCeEeccCCccccccchhhhccCCCcEEeccccccc-cccCc
Q 045449          416 AGPITDELCHLARLHSLVLQGNKFSGSIP-SCLGNLTSVRVLYLGLNIFTSVLSSTIWNLKDILFIDVSSNFLD-GPLSL  493 (823)
Q Consensus       416 ~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~-g~~p~  493 (823)
                      ++..+. +..+++|+.|++++|.+++..| ..+.++++|++|++++|.+++.+|..+..+++|+.|++++|.++ +.+|.
T Consensus       386 ~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~  464 (570)
T 2z63_A          386 ITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD  464 (570)
T ss_dssp             EEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECS
T ss_pred             cccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchh
Confidence            976555 9999999999999999998877 57899999999999999999999999999999999999999998 68999


Q ss_pred             cccCCCCCcEEEcccCCCCCCCCCcccCccCCCCCCCCCCCcccccCCcccCC
Q 045449          494 DIGNLKVVIGLDFSRNNLSGDIPITIGEGEIPRGGPFANLTAKSFMGNELLCG  546 (823)
Q Consensus       494 ~~~~l~~L~~L~ls~N~l~g~ip~~~~~g~ip~~~~~~~~~~~~~~~n~~~c~  546 (823)
                      .+..++.|+.|++++|++++.+|..+.        .+..+..+.+.+|....-
T Consensus       465 ~~~~l~~L~~L~l~~n~l~~~~~~~~~--------~l~~L~~L~l~~n~l~~~  509 (570)
T 2z63_A          465 IFTELRNLTFLDLSQCQLEQLSPTAFN--------SLSSLQVLNMASNQLKSV  509 (570)
T ss_dssp             CCTTCTTCCEEECTTSCCCEECTTTTT--------TCTTCCEEECCSSCCSCC
T ss_pred             hhhcccCCCEEECCCCccccCChhhhh--------cccCCCEEeCCCCcCCCC
Confidence            999999999999999999976666553        345677778888865443

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=2.4e-49  Score=457.97  Aligned_cols=454  Identities=20%  Similarity=0.195  Sum_probs=363.6

Q ss_pred             EEEEcCCCCCccccCcccCCCCCCcEEEccCCCCCCCCCCCCCCCCCCCEEECCCCcCcCCCchhhhcCCCCcEEecccc
Q 045449           55 IGLNISSFNLQGTITPQLGNLSSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQLFGSLSSFIFNMSSMTTIDLSIN  134 (823)
Q Consensus        55 ~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N  134 (823)
                      +.||+++|+++ .+|..+.  ++|++|||++|+|++..|..|.++++|++|+|++|+|++..|..|+++++|++|||++|
T Consensus         3 ~~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N   79 (520)
T 2z7x_B            3 FLVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN   79 (520)
T ss_dssp             CEEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred             ceEecCCCCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence            36888999888 5777666  88999999999998877788889999999999999998888888999999999999999


Q ss_pred             cccCccCccccCCCCCCccccccceeeeccceeec-cCccccccchhhHHHHHhhcCCCcccCCcccCCcchh--hhhcc
Q 045449          135 RLSGELPANICKIPSTLSKCKQLEELNLGFNNLSG-AIPKEIGNLTKLKEIISTITNSTVCEIPREIGNLPYL--ARLAL  211 (823)
Q Consensus       135 ~l~~~~p~~~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~~L~~l~~n~~~~~ip~~l~~l~~L--~~L~L  211 (823)
                      +++ .+|.       .  .+++|++|+|++|++++ .+|..|+++++|++|. +.+|.+.+   ..+..+++|  ++|++
T Consensus        80 ~l~-~lp~-------~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~-L~~n~l~~---~~~~~l~~L~L~~L~l  145 (520)
T 2z7x_B           80 KLV-KISC-------H--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLG-LSTTHLEK---SSVLPIAHLNISKVLL  145 (520)
T ss_dssp             CCC-EEEC-------C--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEE-EEESSCCG---GGGGGGTTSCEEEEEE
T ss_pred             cee-ecCc-------c--ccCCccEEeccCCccccccchhhhccCCcceEEE-ecCcccch---hhccccccceeeEEEe
Confidence            887 3443       2  67889999999999887 5788888888888885 77777766   356667777  99999


Q ss_pred             ccccc--cCCccccccCCC-CCcEEEccCCcccccCCcccccCCCCccEEEeeccc-------cccccCccccCCCCCCe
Q 045449          212 ATNNL--VGVVPVTIFNMS-ALKEISLLNNSLSGSLPSRIDLSLPNVETLNLGINS-------FSGTIPSSITNSSKLSD  281 (823)
Q Consensus       212 s~N~l--~~~~p~~~~~l~-~L~~L~Ls~N~l~g~lp~~~~~~l~~L~~L~Ls~N~-------l~~~~p~~~~~l~~L~~  281 (823)
                      ++|++  .+..|..+.++. +...+++++|.+.+.++...+..+++|+.|++++|.       +.+.+| .+..+++|+.
T Consensus       146 ~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~  224 (520)
T 2z7x_B          146 VLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSN  224 (520)
T ss_dssp             EECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCE
T ss_pred             ecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhh
Confidence            99999  788888887766 455678889998888888777778999999999987       777776 7888999999


Q ss_pred             EEeecccccccCCCccC---CCcccCcccccCccccCCCCcccccccc-----cCCCCceEEEeecCCCCccCC-ccccc
Q 045449          282 LELGENLFSGFIPNTIG---NLRNLEFGNIADNYLTSSTPELSFLSSL-----TNCKKLKVLIVTGNPLDGILP-KSIGN  352 (823)
Q Consensus       282 L~Ls~N~l~~~~p~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~~~l-----~~l~~L~~L~Ls~N~l~~~~p-~~~~~  352 (823)
                      |++++|.+++..+..+.   ..++|++|++++|++++.     ++..+     ..+++|+.+++++|.+  .+| ..+..
T Consensus       225 L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-----~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~  297 (520)
T 2z7x_B          225 LTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQ-----LDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYE  297 (520)
T ss_dssp             EEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESC-----CCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHH
T ss_pred             ccccccccCHHHHHHHHHHhhhCcccEEEeecccccCc-----cccchhhcccccCceeEeccccccce--ecchhhhhc
Confidence            99999888764332221   145889999999999876     34455     7889999999999998  455 44443


Q ss_pred             cc--cccceEEecCCcceeccCccccCcccccEEEcccCcCCCCchhcccccCCCCEEEccCCCCCC--cchHhhhcCCC
Q 045449          353 FS--LSLETILMANCSISGNIPQVVGNLSNLLVLELGGNNLTGPIPVTFSQLQTLQAFDLTRNKLAG--PITDELCHLAR  428 (823)
Q Consensus       353 ~~--~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~  428 (823)
                      +.  .+|++|++++|.+....  .+..+++|++|++++|++++.+|..+..+++|++|+|++|++++  .+|..+..+++
T Consensus       298 ~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~  375 (520)
T 2z7x_B          298 IFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKS  375 (520)
T ss_dssp             HHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTT
T ss_pred             ccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCC
Confidence            31  35899999999886532  12678889999999999998888889999999999999999987  56677889999


Q ss_pred             CCEEEcccCcCccccccc-ccCCCCCCeEeccCCccccccchhhhccCCCcEEeccccccccccCccccCCCCCcEEEcc
Q 045449          429 LHSLVLQGNKFSGSIPSC-LGNLTSVRVLYLGLNIFTSVLSSTIWNLKDILFIDVSSNFLDGPLSLDIGNLKVVIGLDFS  507 (823)
Q Consensus       429 L~~L~Ls~N~l~g~~p~~-~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~ls  507 (823)
                      |++|+|++|.+++.+|.. +..+++|+.|+|++|++++.+|..+.  ++|+.||+++|.++ .+|..+..++.|+.|+++
T Consensus       376 L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~  452 (520)
T 2z7x_B          376 LQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVA  452 (520)
T ss_dssp             CCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECC
T ss_pred             CCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECC
Confidence            999999999998866654 78888999999999999888777664  78999999999998 788888889999999999


Q ss_pred             cCCCCCCCCCcccCccCCCCCCCCCCCcccccCCcccCC
Q 045449          508 RNNLSGDIPITIGEGEIPRGGPFANLTAKSFMGNELLCG  546 (823)
Q Consensus       508 ~N~l~g~ip~~~~~g~ip~~~~~~~~~~~~~~~n~~~c~  546 (823)
                      +|+++ .+|...       ...+..+....+.+|++.|.
T Consensus       453 ~N~l~-~l~~~~-------~~~l~~L~~L~l~~N~~~c~  483 (520)
T 2z7x_B          453 SNQLK-SVPDGI-------FDRLTSLQKIWLHTNPWDCS  483 (520)
T ss_dssp             SSCCC-CCCTTT-------TTTCTTCCEEECCSSCBCCC
T ss_pred             CCcCC-ccCHHH-------hccCCcccEEECcCCCCccc
Confidence            99988 455431       12355677788889988775

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=5.4e-49  Score=472.09  Aligned_cols=428  Identities=16%  Similarity=0.205  Sum_probs=355.2

Q ss_pred             CCCcEEEccCCCCCCCCCCCCCCCCCCCEEEC-CCCcCcCCCchhh----------------------------------
Q 045449           76 SSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDF-SDNQLFGSLSSFI----------------------------------  120 (823)
Q Consensus        76 ~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L-s~N~l~~~~p~~~----------------------------------  120 (823)
                      .+++.|+|++|.++|.+|++|++|++|++||| ++|.++|..|...                                  
T Consensus       323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~  402 (876)
T 4ecn_A          323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD  402 (876)
T ss_dssp             SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred             CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence            47899999999999999999999999999999 9998887743221                                  


Q ss_pred             -----------------hcCCCCcEEeccc--ccccCccCccccCCCCCCccccccceeeeccceeec-cCccccccchh
Q 045449          121 -----------------FNMSSMTTIDLSI--NRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSG-AIPKEIGNLTK  180 (823)
Q Consensus       121 -----------------~~l~~L~~L~Ls~--N~l~~~~p~~~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~l~~l~~  180 (823)
                                       .....++.+.+..  |++++ +|..+       +++++|++|+|++|+|+| .+|..+...  
T Consensus       403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l-------~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~--  472 (876)
T 4ecn_A          403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAI-------QRLTKLQIIYFANSPFTYDNIAVDWEDA--  472 (876)
T ss_dssp             HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGG-------GGCTTCCEEEEESCCCCGGGBSSSCSCT--
T ss_pred             HHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHH-------hcCCCCCEEECcCCcCCCCccccccccc--
Confidence                             1111233333333  66665 55544       778888888888888876 333332221  


Q ss_pred             hHHHHHhhcCCCcccCCcccC--CcchhhhhccccccccCCccccccCCCCCcEEEccCCc-ccc-cCCccccc------
Q 045449          181 LKEIISTITNSTVCEIPREIG--NLPYLARLALATNNLVGVVPVTIFNMSALKEISLLNNS-LSG-SLPSRIDL------  250 (823)
Q Consensus       181 L~~L~~l~~n~~~~~ip~~l~--~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~-l~g-~lp~~~~~------  250 (823)
                             ..|...+.+|..++  ++++|++|+|++|++.+.+|..|.++++|++|+|++|+ ++| .+|..+..      
T Consensus       473 -------s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~  545 (876)
T 4ecn_A          473 -------NSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDED  545 (876)
T ss_dssp             -------TSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTT
T ss_pred             -------ccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhccc
Confidence                   12334467899988  99999999999999999999999999999999999998 998 88876543      


Q ss_pred             CCCCccEEEeeccccccccCc--cccCCCCCCeEEeecccccccCCCccCCCcccCcccccCccccCCCCcccccccccC
Q 045449          251 SLPNVETLNLGINSFSGTIPS--SITNSSKLSDLELGENLFSGFIPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTN  328 (823)
Q Consensus       251 ~l~~L~~L~Ls~N~l~~~~p~--~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~  328 (823)
                      .+++|++|+|++|+++ .+|.  .+.++++|+.|+|++|+++ .+| .|+.+++|+.|+|++|+++.      ++..+.+
T Consensus       546 ~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~~------lp~~l~~  616 (876)
T 4ecn_A          546 TGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIEE------IPEDFCA  616 (876)
T ss_dssp             TTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCSC------CCTTSCE
T ss_pred             ccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCcccc------chHHHhh
Confidence            3459999999999999 8998  9999999999999999999 778 99999999999999999994      4567889


Q ss_pred             CCC-ceEEEeecCCCCccCCccccccc-cccceEEecCCcceeccCccc---c--CcccccEEEcccCcCCCCchhc-cc
Q 045449          329 CKK-LKVLIVTGNPLDGILPKSIGNFS-LSLETILMANCSISGNIPQVV---G--NLSNLLVLELGGNNLTGPIPVT-FS  400 (823)
Q Consensus       329 l~~-L~~L~Ls~N~l~~~~p~~~~~~~-~~L~~L~L~~N~l~~~~p~~~---~--~l~~L~~L~Ls~N~l~g~~p~~-~~  400 (823)
                      +++ |+.|+|++|.++ .+|..+.... .+|++|++++|++++.+|...   .  .+++|+.|+|++|+++ .+|.. +.
T Consensus       617 l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~  694 (876)
T 4ecn_A          617 FTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFA  694 (876)
T ss_dssp             ECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHH
T ss_pred             ccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHc
Confidence            999 999999999999 7788877662 249999999999998877543   2  3458999999999999 45554 56


Q ss_pred             ccCCCCEEEccCCCCCCcchHhhhcC--------CCCCEEEcccCcCccccccccc--CCCCCCeEeccCCccccccchh
Q 045449          401 QLQTLQAFDLTRNKLAGPITDELCHL--------ARLHSLVLQGNKFSGSIPSCLG--NLTSVRVLYLGLNIFTSVLSST  470 (823)
Q Consensus       401 ~l~~L~~L~Ls~N~l~~~~p~~~~~l--------~~L~~L~Ls~N~l~g~~p~~~~--~l~~L~~L~Ls~N~l~~~~p~~  470 (823)
                      .+++|+.|+|++|+|+ .+|..+...        ++|+.|+|++|+|+ .+|..+.  .+++|+.|+|++|++++ +|..
T Consensus       695 ~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~  771 (876)
T 4ecn_A          695 TGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQ  771 (876)
T ss_dssp             TTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCG
T ss_pred             cCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchh
Confidence            8999999999999999 566654432        38999999999999 7898887  99999999999999999 7999


Q ss_pred             hhccCCCcEEeccc------cccccccCccccCCCCCcEEEcccCCCCCCCCCcccCccCCCCCCCCCCCcccccCCccc
Q 045449          471 IWNLKDILFIDVSS------NFLDGPLSLDIGNLKVVIGLDFSRNNLSGDIPITIGEGEIPRGGPFANLTAKSFMGNELL  544 (823)
Q Consensus       471 ~~~l~~L~~LdLs~------N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~ip~~~~~g~ip~~~~~~~~~~~~~~~n~~~  544 (823)
                      ++.+++|+.|+|++      |.+.+.+|..+.+++.|+.|+|++|++ +.||..+.          ..+..+++.+|+..
T Consensus       772 l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~----------~~L~~LdLs~N~l~  840 (876)
T 4ecn_A          772 PLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT----------PQLYILDIADNPNI  840 (876)
T ss_dssp             GGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC----------SSSCEEECCSCTTC
T ss_pred             hhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc----------CCCCEEECCCCCCC
Confidence            99999999999976      889999999999999999999999999 78887652          35677788888765


Q ss_pred             C
Q 045449          545 C  545 (823)
Q Consensus       545 c  545 (823)
                      .
T Consensus       841 ~  841 (876)
T 4ecn_A          841 S  841 (876)
T ss_dssp             E
T ss_pred             c
Confidence            4

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=2.3e-48  Score=449.75  Aligned_cols=436  Identities=19%  Similarity=0.223  Sum_probs=375.8

Q ss_pred             CcEEEEEcCCCCCccccCcccCCCCCCcEEEccCCCCCCCCCCCCCCCCCCCEEECCCCcCcCCCchhhhcCCCCcEEec
Q 045449           52 HRVIGLNISSFNLQGTITPQLGNLSSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQLFGSLSSFIFNMSSMTTIDL  131 (823)
Q Consensus        52 ~~v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  131 (823)
                      .+++.|+|++|.+++..|..|.++++|++|+|++|+|++..|..|+++++|++|||++|+|+ .+|..  .+++|++|+|
T Consensus        21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L   97 (520)
T 2z7x_B           21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDL   97 (520)
T ss_dssp             TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEEC
T ss_pred             ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEec
Confidence            58999999999999888889999999999999999999988999999999999999999998 46665  8999999999


Q ss_pred             ccccccC-ccCccccCCCCCCccccccceeeeccceeeccCccccccchhh--HHHHHhhcCCC--cccCCcccCCcc-h
Q 045449          132 SINRLSG-ELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEIGNLTKL--KEIISTITNST--VCEIPREIGNLP-Y  205 (823)
Q Consensus       132 s~N~l~~-~~p~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L--~~L~~l~~n~~--~~~ip~~l~~l~-~  205 (823)
                      ++|++++ .+|..+       +++++|++|+|++|++++   ..+..+++|  +.|. +..|.+  .+.+|..+..+. .
T Consensus        98 ~~N~l~~~~~p~~~-------~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~-l~~n~l~~~~~~~~~l~~l~~~  166 (520)
T 2z7x_B           98 SFNAFDALPICKEF-------GNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVL-LVLGETYGEKEDPEGLQDFNTE  166 (520)
T ss_dssp             CSSCCSSCCCCGGG-------GGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEE-EEECTTTTSSCCTTTTTTCCEE
T ss_pred             cCCccccccchhhh-------ccCCcceEEEecCcccch---hhccccccceeeEEE-eecccccccccccccccccccc
Confidence            9999986 455555       899999999999999986   356667777  7775 888888  788899988876 3


Q ss_pred             hhhhccccccccCCccc-cccCCCCCcEEEccCCc-------ccccCCcccccCCCCccEEEeeccccccccCcccc---
Q 045449          206 LARLALATNNLVGVVPV-TIFNMSALKEISLLNNS-------LSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSIT---  274 (823)
Q Consensus       206 L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~Ls~N~-------l~g~lp~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~---  274 (823)
                      ...+++++|++.+.++. .+.++++|+.|++++|.       +.+.+| .+. .+++|+.|++++|.+++..+..+.   
T Consensus       167 ~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~-~l~~L~~L~l~~~~l~~~~~~~~~~~~  244 (520)
T 2z7x_B          167 SLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQ-TNPKLSNLTLNNIETTWNSFIRILQLV  244 (520)
T ss_dssp             EEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGG-GCTTCCEEEEEEEEEEHHHHHHHHHHH
T ss_pred             eEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhc-cccchhhccccccccCHHHHHHHHHHh
Confidence            45678999998877665 66789999999999998       777776 444 499999999999998865433322   


Q ss_pred             CCCCCCeEEeecccccccCCCcc-----CCCcccCcccccCccccCCCCcccccccccCC---CCceEEEeecCCCCccC
Q 045449          275 NSSKLSDLELGENLFSGFIPNTI-----GNLRNLEFGNIADNYLTSSTPELSFLSSLTNC---KKLKVLIVTGNPLDGIL  346 (823)
Q Consensus       275 ~l~~L~~L~Ls~N~l~~~~p~~~-----~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~l---~~L~~L~Ls~N~l~~~~  346 (823)
                      ..++|++|++++|+++|.+|..+     +.+++|+.+++++|.+ ..+.     ..+..+   .+|+.|++++|.+.+..
T Consensus       245 ~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~-----~~~~~~~~~~~L~~L~l~~n~l~~~~  318 (520)
T 2z7x_B          245 WHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQ-----SYIYEIFSNMNIKNFTVSGTRMVHML  318 (520)
T ss_dssp             HTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCT-----HHHHHHHHTCCCSEEEEESSCCCCCC
T ss_pred             hhCcccEEEeecccccCccccchhhcccccCceeEeccccccce-ecch-----hhhhcccccCceeEEEcCCCcccccc
Confidence            24689999999999999999998     9999999999999999 3221     233333   67999999999987543


Q ss_pred             CccccccccccceEEecCCcceeccCccccCcccccEEEcccCcCCC--CchhcccccCCCCEEEccCCCCCCcchHh-h
Q 045449          347 PKSIGNFSLSLETILMANCSISGNIPQVVGNLSNLLVLELGGNNLTG--PIPVTFSQLQTLQAFDLTRNKLAGPITDE-L  423 (823)
Q Consensus       347 p~~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~-~  423 (823)
                      -  +..+ ++|++|++++|++++.+|..++.+++|++|+|++|++++  .+|..+..+++|++|+|++|++++.+|.. +
T Consensus       319 ~--~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~  395 (520)
T 2z7x_B          319 C--PSKI-SPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDC  395 (520)
T ss_dssp             C--CSSC-CCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSC
T ss_pred             c--hhhC-CcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchh
Confidence            1  1345 789999999999999999999999999999999999997  56788999999999999999999866765 8


Q ss_pred             hcCCCCCEEEcccCcCcccccccccCCCCCCeEeccCCccccccchhhhccCCCcEEeccccccccccCcc-ccCCCCCc
Q 045449          424 CHLARLHSLVLQGNKFSGSIPSCLGNLTSVRVLYLGLNIFTSVLSSTIWNLKDILFIDVSSNFLDGPLSLD-IGNLKVVI  502 (823)
Q Consensus       424 ~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~~p~~-~~~l~~L~  502 (823)
                      ..+++|+.|+|++|++++.+|..+.  ++|+.|+|++|+++ .+|..+..+++|+.|++++|+++ .+|.. +..++.|+
T Consensus       396 ~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~  471 (520)
T 2z7x_B          396 SWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQ  471 (520)
T ss_dssp             CCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCC
T ss_pred             ccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCccc
Confidence            8899999999999999999888775  79999999999999 58888889999999999999999 46665 99999999


Q ss_pred             EEEcccCCCCCCCC
Q 045449          503 GLDFSRNNLSGDIP  516 (823)
Q Consensus       503 ~L~ls~N~l~g~ip  516 (823)
                      .|++++|++++.++
T Consensus       472 ~L~l~~N~~~c~c~  485 (520)
T 2z7x_B          472 KIWLHTNPWDCSCP  485 (520)
T ss_dssp             EEECCSSCBCCCHH
T ss_pred             EEECcCCCCcccCC
Confidence            99999999998765

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=2e-46  Score=436.43  Aligned_cols=464  Identities=21%  Similarity=0.200  Sum_probs=386.8

Q ss_pred             eeCCCCCcEEEEEcCCCCCccccCcccCCCCCCcEEEccCCCCCCCCCCCCCCCCCCCEEECCCCcCcCCCchhhhcCCC
Q 045449           46 TCDVNSHRVIGLNISSFNLQGTITPQLGNLSSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQLFGSLSSFIFNMSS  125 (823)
Q Consensus        46 ~c~~~~~~v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  125 (823)
                      .|..  ..+  .|+++++++ .+|+.+.  ++|++|||++|+|++..|..|.++++|++|+|++|+|++..|.+|+++++
T Consensus         3 ~C~~--~~~--c~~~~~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~   75 (549)
T 2z81_A            3 SCDA--SGV--CDGRSRSFT-SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGS   75 (549)
T ss_dssp             EECT--TSE--EECTTSCCS-SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred             cCCC--Cce--EECCCCccc-cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhcccccc
Confidence            5753  223  799999998 6777664  79999999999999999999999999999999999999999999999999


Q ss_pred             CcEEecccccccCccCccccCCCCCCccccccceeeeccceeec-cCccccccchhhHHHHHhhcCCCcccCC-cccCCc
Q 045449          126 MTTIDLSINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSG-AIPKEIGNLTKLKEIISTITNSTVCEIP-REIGNL  203 (823)
Q Consensus       126 L~~L~Ls~N~l~~~~p~~~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~~L~~l~~n~~~~~ip-~~l~~l  203 (823)
                      |++|||++|++++..|..+       +++++|++|+|++|++++ .+|..++++++|++|. +..|...+.+| ..|.++
T Consensus        76 L~~L~Ls~n~l~~~~~~~~-------~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~-L~~n~~~~~~~~~~~~~l  147 (549)
T 2z81_A           76 LEHLDLSDNHLSSLSSSWF-------GPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLR-IGNVETFSEIRRIDFAGL  147 (549)
T ss_dssp             CCEEECTTSCCCSCCHHHH-------TTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEE-EEESSSCCEECTTTTTTC
T ss_pred             CCEEECCCCccCccCHHHh-------ccCCCCcEEECCCCcccccchhhhhhccCCccEEE-CCCCccccccCHhhhhcc
Confidence            9999999999997665555       889999999999999987 4678899999999986 78888777776 689999


Q ss_pred             chhhhhccccccccCCccccccCCCCCcEEEccCCcccccCCcccccCCCCccEEEeecccccccc--C-ccccCCCCCC
Q 045449          204 PYLARLALATNNLVGVVPVTIFNMSALKEISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTI--P-SSITNSSKLS  280 (823)
Q Consensus       204 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~lp~~~~~~l~~L~~L~Ls~N~l~~~~--p-~~~~~l~~L~  280 (823)
                      ++|++|++++|++++..|..+.++++|++|+++.|.++ .+|..+...+++|++|++++|++++..  | .....+++|+
T Consensus       148 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~  226 (549)
T 2z81_A          148 TSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMK  226 (549)
T ss_dssp             CEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCC
T ss_pred             cccCeeeccCCcccccChhhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCccccccccccchhhhhhccc
Confidence            99999999999999999999999999999999999986 677776666999999999999999752  2 2234578999


Q ss_pred             eEEeecccccccCC----CccCCCcccCcccccCccccCCCCcc-cccccccCCCCceEEEeecCCCCcc-----CCccc
Q 045449          281 DLELGENLFSGFIP----NTIGNLRNLEFGNIADNYLTSSTPEL-SFLSSLTNCKKLKVLIVTGNPLDGI-----LPKSI  350 (823)
Q Consensus       281 ~L~Ls~N~l~~~~p----~~~~~l~~L~~L~L~~N~l~~~~~~~-~~~~~l~~l~~L~~L~Ls~N~l~~~-----~p~~~  350 (823)
                      .|++++|.+++..+    ..+..+++|+.+++++|.+.+..... .....+..+.+|+.|++.++.+...     ++..+
T Consensus       227 ~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~  306 (549)
T 2z81_A          227 KLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVY  306 (549)
T ss_dssp             EEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHH
T ss_pred             ceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhh
Confidence            99999999987644    34567889999999999998753210 0123456788999999999987643     12212


Q ss_pred             cccccccceEEecCCcceeccCccc-cCcccccEEEcccCcCCCCchh---cccccCCCCEEEccCCCCCCcch--Hhhh
Q 045449          351 GNFSLSLETILMANCSISGNIPQVV-GNLSNLLVLELGGNNLTGPIPV---TFSQLQTLQAFDLTRNKLAGPIT--DELC  424 (823)
Q Consensus       351 ~~~~~~L~~L~L~~N~l~~~~p~~~-~~l~~L~~L~Ls~N~l~g~~p~---~~~~l~~L~~L~Ls~N~l~~~~p--~~~~  424 (823)
                      ... .+|++|++++|.++ .+|..+ ..+++|++|+|++|++++.+|.   .++.+++|++|+|++|++++..+  ..+.
T Consensus       307 ~~~-~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~  384 (549)
T 2z81_A          307 SLL-EKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILL  384 (549)
T ss_dssp             HHS-TTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGG
T ss_pred             hhc-ccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhh
Confidence            222 68999999999998 566655 6799999999999999987754   47889999999999999997643  5689


Q ss_pred             cCCCCCEEEcccCcCcccccccccCCCCCCeEeccCCccccccchhhhccCCCcEEeccccccccccCccccCCCCCcEE
Q 045449          425 HLARLHSLVLQGNKFSGSIPSCLGNLTSVRVLYLGLNIFTSVLSSTIWNLKDILFIDVSSNFLDGPLSLDIGNLKVVIGL  504 (823)
Q Consensus       425 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L  504 (823)
                      .+++|++|+|++|+++ .+|..+..+++|++|+|++|.+++. |..+  .++|++||+++|++++.+    ..++.|+.|
T Consensus       385 ~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~l-~~~~--~~~L~~L~Ls~N~l~~~~----~~l~~L~~L  456 (549)
T 2z81_A          385 TLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVV-KTCI--PQTLEVLDVSNNNLDSFS----LFLPRLQEL  456 (549)
T ss_dssp             GCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSCC-CTTS--CTTCSEEECCSSCCSCCC----CCCTTCCEE
T ss_pred             cCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcccc-cchh--cCCceEEECCCCChhhhc----ccCChhcEE
Confidence            9999999999999999 6899999999999999999999863 4333  268999999999999864    578999999


Q ss_pred             EcccCCCCCCCCCcccCccCCCCCCCCCCCcccccCCcccC
Q 045449          505 DFSRNNLSGDIPITIGEGEIPRGGPFANLTAKSFMGNELLC  545 (823)
Q Consensus       505 ~ls~N~l~g~ip~~~~~g~ip~~~~~~~~~~~~~~~n~~~c  545 (823)
                      ++++|+++ .||..         ..+..+..+++.+|....
T Consensus       457 ~Ls~N~l~-~ip~~---------~~l~~L~~L~Ls~N~l~~  487 (549)
T 2z81_A          457 YISRNKLK-TLPDA---------SLFPVLLVMKISRNQLKS  487 (549)
T ss_dssp             ECCSSCCS-SCCCG---------GGCTTCCEEECCSSCCCC
T ss_pred             ECCCCccC-cCCCc---------ccCccCCEEecCCCccCC
Confidence            99999999 55542         235567788888886654

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=3.2e-45  Score=433.69  Aligned_cols=465  Identities=19%  Similarity=0.172  Sum_probs=366.8

Q ss_pred             CcEEEEEcCCCCCccccCcccCCCCCCcEEEccCCCCCCCCCCCCCCCCCCCEEECCCCcCcCCCchhhhcCCCCcEEec
Q 045449           52 HRVIGLNISSFNLQGTITPQLGNLSSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQLFGSLSSFIFNMSSMTTIDL  131 (823)
Q Consensus        52 ~~v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  131 (823)
                      ..++.|||++|+|++..+.+|.++++|++|||++|+|+++.|++|.++++|++|+|++|+|++..+.+|.++++|++|+|
T Consensus        52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L  131 (635)
T 4g8a_A           52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  131 (635)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred             cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence            36899999999999887889999999999999999999888889999999999999999999888899999999999999


Q ss_pred             ccccccCccCccccCCCCCCccccccceeeeccceeec-cCccccccchhhHHHHHhhcCCCcccCCcccCCcchhh---
Q 045449          132 SINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSG-AIPKEIGNLTKLKEIISTITNSTVCEIPREIGNLPYLA---  207 (823)
Q Consensus       132 s~N~l~~~~p~~~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~~L~~l~~n~~~~~ip~~l~~l~~L~---  207 (823)
                      ++|++++..+..       |+++++|++|+|++|++++ .+|..++.+++|++|. +..|.+.+..|..|..+.++.   
T Consensus       132 s~N~l~~l~~~~-------~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~-L~~N~l~~~~~~~l~~L~~l~~~~  203 (635)
T 4g8a_A          132 VETNLASLENFP-------IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD-LSSNKIQSIYCTDLRVLHQMPLLN  203 (635)
T ss_dssp             TTSCCCCSTTCC-------CTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEE-CCSSCCCEECGGGGHHHHTCTTCC
T ss_pred             CCCcCCCCChhh-------hhcCcccCeeccccCccccCCCchhhccchhhhhhc-ccCccccccccccccchhhhhhhh
Confidence            999998544433       4899999999999999975 4688889999999885 888888888888887776655   


Q ss_pred             -hhccccccccCCccccccCCCCCcEEEccCCcccccCCcccccC-----------------------------------
Q 045449          208 -RLALATNNLVGVVPVTIFNMSALKEISLLNNSLSGSLPSRIDLS-----------------------------------  251 (823)
Q Consensus       208 -~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~lp~~~~~~-----------------------------------  251 (823)
                       .++++.|.++...+..+. ...+..+++++|..+..++...+..                                   
T Consensus       204 ~~~~ls~n~l~~i~~~~~~-~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~  282 (635)
T 4g8a_A          204 LSLDLSLNPMNFIQPGAFK-EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLT  282 (635)
T ss_dssp             CEEECTTCCCCEECTTTTT-TCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSE
T ss_pred             hhhhcccCcccccCccccc-chhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchh
Confidence             467888888866555443 3456667777765432222211111                                   


Q ss_pred             ----------------------CCCccEEEeeccccccccCccccCCCCCCeEEeecccccccCCCccCCCcccCccccc
Q 045449          252 ----------------------LPNVETLNLGINSFSGTIPSSITNSSKLSDLELGENLFSGFIPNTIGNLRNLEFGNIA  309 (823)
Q Consensus       252 ----------------------l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~  309 (823)
                                            +.+++.+++..|.+....  .+....+|+.|++++|.+.+..+.   .+..|+.+++.
T Consensus       283 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~---~l~~L~~l~l~  357 (635)
T 4g8a_A          283 IEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVK--DFSYNFGWQHLELVNCKFGQFPTL---KLKSLKRLTFT  357 (635)
T ss_dssp             EEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECG--GGGSCCCCSEEEEESCEESSCCCC---BCTTCCEEEEE
T ss_pred             hhhhhhhhhcccccchhhhhhhhccccccccccccccccc--ccccchhhhhhhcccccccCcCcc---cchhhhhcccc
Confidence                                  223444444444443221  233444566666666666544332   33455556666


Q ss_pred             CccccCCCCcccccccccCCCCceEEEeecCCCCc--cCCccccccccccceEEecCCcceeccCccccCcccccEEEcc
Q 045449          310 DNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDG--ILPKSIGNFSLSLETILMANCSISGNIPQVVGNLSNLLVLELG  387 (823)
Q Consensus       310 ~N~l~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~--~~p~~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls  387 (823)
                      .|.+...       .....+++|+.|++++|.+..  ..+..+... .+|++++++.|.+.. .+..+..+++|+.++++
T Consensus       358 ~n~~~~~-------~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~-~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~  428 (635)
T 4g8a_A          358 SNKGGNA-------FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGT-ISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQ  428 (635)
T ss_dssp             SCCSCCB-------CCCCBCTTCCEEECCSSCCBEEEECCHHHHSC-SCCCEEECCSCSEEE-ECSCCTTCTTCCEEECT
T ss_pred             cccCCCC-------cccccccccccchhhccccccccccccchhhh-hhhhhhhcccccccc-ccccccccccccchhhh
Confidence            6655443       234568899999999999864  355566666 689999999998875 45668889999999999


Q ss_pred             cCcCCCCch-hcccccCCCCEEEccCCCCCCcchHhhhcCCCCCEEEcccCcC-cccccccccCCCCCCeEeccCCcccc
Q 045449          388 GNNLTGPIP-VTFSQLQTLQAFDLTRNKLAGPITDELCHLARLHSLVLQGNKF-SGSIPSCLGNLTSVRVLYLGLNIFTS  465 (823)
Q Consensus       388 ~N~l~g~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l-~g~~p~~~~~l~~L~~L~Ls~N~l~~  465 (823)
                      .|+.....+ ..|..+.+++.+++++|.+++..+..+..++.|+.|+|++|.+ .+.+|..|..+++|++|+|++|++++
T Consensus       429 ~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~  508 (635)
T 4g8a_A          429 HSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ  508 (635)
T ss_dssp             TSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCE
T ss_pred             hccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCC
Confidence            998876654 4578999999999999999999999999999999999999985 55678899999999999999999999


Q ss_pred             ccchhhhccCCCcEEeccccccccccCccccCCCCCcEEEcccCCCCCCCCCcccCccCCCCCCCCCCCcccccCCcccC
Q 045449          466 VLSSTIWNLKDILFIDVSSNFLDGPLSLDIGNLKVVIGLDFSRNNLSGDIPITIGEGEIPRGGPFANLTAKSFMGNELLC  545 (823)
Q Consensus       466 ~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~ip~~~~~g~ip~~~~~~~~~~~~~~~n~~~c  545 (823)
                      .+|..|.++++|++|+|++|+|++..|..+..++.|++|||++|+|++.+|..+.  ..     ..++..+.+.+|++.|
T Consensus       509 l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~l-----~~~L~~L~L~~Np~~C  581 (635)
T 4g8a_A          509 LSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ--HF-----PSSLAFLNLTQNDFAC  581 (635)
T ss_dssp             ECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTT--CC-----CTTCCEEECTTCCBCC
T ss_pred             cChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHH--hh-----hCcCCEEEeeCCCCcc
Confidence            9999999999999999999999999999999999999999999999988777663  11     1456778899999999


Q ss_pred             C
Q 045449          546 G  546 (823)
Q Consensus       546 ~  546 (823)
                      +
T Consensus       582 ~  582 (635)
T 4g8a_A          582 T  582 (635)
T ss_dssp             S
T ss_pred             c
Confidence            6

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=5.3e-46  Score=433.85  Aligned_cols=460  Identities=19%  Similarity=0.195  Sum_probs=310.6

Q ss_pred             EEEEcCCCCCccccCcccCCCCCCcEEEccCCCCCCCCCCCCCCCCCCCEEECCCCcCcCCCchhhhcCCCCcEEecccc
Q 045449           55 IGLNISSFNLQGTITPQLGNLSSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQLFGSLSSFIFNMSSMTTIDLSIN  134 (823)
Q Consensus        55 ~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N  134 (823)
                      +.+|++++++++ +|..+.  ++|++|||++|+|++..|..|.++++|++|+|++|+|++..|.+|.++++|++|||++|
T Consensus        34 ~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N  110 (562)
T 3a79_B           34 SMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN  110 (562)
T ss_dssp             CEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS
T ss_pred             cEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC
Confidence            689999999995 776664  78999999999999888889999999999999999999888999999999999999999


Q ss_pred             cccCccCccccCCCCCCccccccceeeeccceeec-cCccccccchhhHHHHHhhcCCCcccCCcccCCcchh--hhhcc
Q 045449          135 RLSGELPANICKIPSTLSKCKQLEELNLGFNNLSG-AIPKEIGNLTKLKEIISTITNSTVCEIPREIGNLPYL--ARLAL  211 (823)
Q Consensus       135 ~l~~~~p~~~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~l~~l~~L~~L~~l~~n~~~~~ip~~l~~l~~L--~~L~L  211 (823)
                      +++ .+|.       .  .+++|++|+|++|++++ .+|..|+++++|++|. +..|.+.+.   .+..+++|  ++|++
T Consensus       111 ~l~-~lp~-------~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~-L~~n~l~~~---~~~~l~~L~L~~L~L  176 (562)
T 3a79_B          111 RLQ-NISC-------C--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLG-LSAAKFRQL---DLLPVAHLHLSCILL  176 (562)
T ss_dssp             CCC-EECS-------C--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEE-EECSBCCTT---TTGGGTTSCEEEEEE
T ss_pred             cCC-ccCc-------c--ccccCCEEECCCCCccccCchHhhcccCcccEEe-cCCCccccC---chhhhhhceeeEEEe
Confidence            987 4443       2  68899999999999986 4578899999999885 777777653   34445555  99999


Q ss_pred             ccccc--cCCccccccCCC-CCcEEEccCCcccccCCcccccCCCCccEEEeeccc-----cccccCccccCCCCCCeEE
Q 045449          212 ATNNL--VGVVPVTIFNMS-ALKEISLLNNSLSGSLPSRIDLSLPNVETLNLGINS-----FSGTIPSSITNSSKLSDLE  283 (823)
Q Consensus       212 s~N~l--~~~~p~~~~~l~-~L~~L~Ls~N~l~g~lp~~~~~~l~~L~~L~Ls~N~-----l~~~~p~~~~~l~~L~~L~  283 (823)
                      ++|++  ++..|..+.+++ +.-.++++.|.+.+.++......+++|+.|++++|+     +.+. ...+..+++|+.|+
T Consensus       177 ~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~-~~~l~~l~~L~~L~  255 (562)
T 3a79_B          177 DLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTF-LSELTRGPTLLNVT  255 (562)
T ss_dssp             EESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHH-HHHHHSCSSCEEEE
T ss_pred             ecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHH-HHHHhccCcceEEE
Confidence            99999  888888887765 223668888888887877777678888888888884     2222 23456666677676


Q ss_pred             eecccccccC----CCccCCCcccCcccccCccccCCCCcccccccccCCCCceEEEeecCCCCccCC-cccccc--ccc
Q 045449          284 LGENLFSGFI----PNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGILP-KSIGNF--SLS  356 (823)
Q Consensus       284 Ls~N~l~~~~----p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p-~~~~~~--~~~  356 (823)
                      ++++.+++..    +..+ ..++|++|++++|.+++..+...+.....+++.|+.++++.|.+  .+| .++..+  ..+
T Consensus       256 L~~~~l~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~  332 (562)
T 3a79_B          256 LQHIETTWKCSVKLFQFF-WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMN  332 (562)
T ss_dssp             EEEEEECHHHHHHHHHHH-TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCC
T ss_pred             ecCCcCcHHHHHHHHHhh-hcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCc
Confidence            6666655321    1111 12367777777777765522210001115566666666666666  334 222211  024


Q ss_pred             cceEEecCCcceeccCccccCcccccEEEcccCcCCCCchhcccccCCCCEEEccCCCCCC--cchHhhhcCCCCCEEEc
Q 045449          357 LETILMANCSISGNIPQVVGNLSNLLVLELGGNNLTGPIPVTFSQLQTLQAFDLTRNKLAG--PITDELCHLARLHSLVL  434 (823)
Q Consensus       357 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~L  434 (823)
                      |++|++++|.+....  ....+++|++|++++|++++.+|..+..+++|++|+|++|++++  .+|..|.++++|+.|+|
T Consensus       333 L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l  410 (562)
T 3a79_B          333 IKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDV  410 (562)
T ss_dssp             CSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEEC
T ss_pred             ceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEEC
Confidence            666777766664321  11456666777777777766666666666777777777777665  23455666667777777


Q ss_pred             ccCcCcccccc-cccCCCCCCeEeccCCccccccchhhhccCCCcEEeccccccccccCccccCCCCCcEEEcccCCCCC
Q 045449          435 QGNKFSGSIPS-CLGNLTSVRVLYLGLNIFTSVLSSTIWNLKDILFIDVSSNFLDGPLSLDIGNLKVVIGLDFSRNNLSG  513 (823)
Q Consensus       435 s~N~l~g~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g  513 (823)
                      ++|++++.+|. .+..+++|+.|+|++|++++.+|..+.  ++|+.|||++|+++ .+|..+..++.|+.|++++|+++ 
T Consensus       411 ~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-  486 (562)
T 3a79_B          411 SLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-  486 (562)
T ss_dssp             TTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-
T ss_pred             CCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-
Confidence            77776664443 366666677777777776665555443  56667777777666 56665556667777777777666 


Q ss_pred             CCCCcccCccCCCCCCCCCCCcccccCCcccCCCC
Q 045449          514 DIPITIGEGEIPRGGPFANLTAKSFMGNELLCGLP  548 (823)
Q Consensus       514 ~ip~~~~~g~ip~~~~~~~~~~~~~~~n~~~c~~~  548 (823)
                      .+|...       ...+..+....+.+|++.|..+
T Consensus       487 ~l~~~~-------~~~l~~L~~L~l~~N~~~c~c~  514 (562)
T 3a79_B          487 SVPDGV-------FDRLTSLQYIWLHDNPWDCTCP  514 (562)
T ss_dssp             CCCTTS-------TTTCTTCCCEECCSCCBCCCHH
T ss_pred             CCCHHH-------HhcCCCCCEEEecCCCcCCCcc
Confidence            344330       1223445556666676666544

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=1.3e-45  Score=397.08  Aligned_cols=296  Identities=31%  Similarity=0.495  Sum_probs=261.4

Q ss_pred             cchHHHHHHHHHHHHhccCCCccccccccCCCCCCcc--ceeeeeCCCC--CcEEEEEcCCCCCcc--ccCcccCCCCCC
Q 045449            5 SIISQHQQALLALKAHISYDHTNLFARNWTSSTSVCI--WIGITCDVNS--HRVIGLNISSFNLQG--TITPQLGNLSSL   78 (823)
Q Consensus         5 ~~~~~~~~aLl~~k~~~~~~~~~~~~~~W~~~~~~c~--w~gv~c~~~~--~~v~~L~L~~~~l~g--~~~~~l~~l~~L   78 (823)
                      .|.++|++||++||+++. ||. .++ +|..+.|||.  |.||+|+..+  ++|+.|+|++++++|  .+|+.++++++|
T Consensus         2 ~c~~~~~~aL~~~k~~~~-~~~-~l~-~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L   78 (313)
T 1ogq_A            2 LCNPQDKQALLQIKKDLG-NPT-TLS-SWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYL   78 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTT-CCG-GGT-TCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTC
T ss_pred             CCCHHHHHHHHHHHHhcC-Ccc-ccc-CCCCCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCC
Confidence            589999999999999984 665 566 9988889999  9999998765  899999999999999  999999999999


Q ss_pred             cEEEccC-CCCCCCCCCCCCCCCCCCEEECCCCcCcCCCchhhhcCCCCcEEecccccccCccCccccCCCCCCcccccc
Q 045449           79 QTLDLSH-NKLSGNIPSSIFNMHTLKLLDFSDNQLFGSLSSFIFNMSSMTTIDLSINRLSGELPANICKIPSTLSKCKQL  157 (823)
Q Consensus        79 ~~L~Ls~-N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~p~~~~~l~~L  157 (823)
                      ++|+|++ |++.+.+|..|+++++|++|+|++|.+++.+|..|.++++|++|+|++|++++.+|..+       ..+++|
T Consensus        79 ~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~-------~~l~~L  151 (313)
T 1ogq_A           79 NFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI-------SSLPNL  151 (313)
T ss_dssp             SEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGG-------GGCTTC
T ss_pred             CeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHH-------hcCCCC
Confidence            9999995 99999999999999999999999999999999999999999999999999998887766       889999


Q ss_pred             ceeeeccceeeccCccccccch-hhHHHHHhhcCCCcccCCcccCCcchhhhhccccccccCCccccccCCCCCcEEEcc
Q 045449          158 EELNLGFNNLSGAIPKEIGNLT-KLKEIISTITNSTVCEIPREIGNLPYLARLALATNNLVGVVPVTIFNMSALKEISLL  236 (823)
Q Consensus       158 ~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~~l~~n~~~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls  236 (823)
                      ++|+|++|++++.+|..++.++ +|++|. +..|.+.+.+|..+..++ |++|+|++|++++..|..|.++++|++|+|+
T Consensus       152 ~~L~L~~N~l~~~~p~~l~~l~~~L~~L~-L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~  229 (313)
T 1ogq_A          152 VGITFDGNRISGAIPDSYGSFSKLFTSMT-ISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLA  229 (313)
T ss_dssp             CEEECCSSCCEEECCGGGGCCCTTCCEEE-CCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECC
T ss_pred             CeEECcCCcccCcCCHHHhhhhhcCcEEE-CcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECC
Confidence            9999999999999999998887 787775 778888888888888887 8888888888888888888888888888888


Q ss_pred             CCcccccCCcccccCCCCccEEEeeccccccccCccccCCCCCCeEEeecccccccCCCccCCCcccCcccccCcc-ccC
Q 045449          237 NNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSITNSSKLSDLELGENLFSGFIPNTIGNLRNLEFGNIADNY-LTS  315 (823)
Q Consensus       237 ~N~l~g~lp~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~-l~~  315 (823)
                      +|.+++.+|. +. .+++|++|+|++|++++.+|..+..+++|++|+|++|+++|.+|.. ..+++|+.|++++|. +.|
T Consensus       230 ~N~l~~~~~~-~~-~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~  306 (313)
T 1ogq_A          230 KNSLAFDLGK-VG-LSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCG  306 (313)
T ss_dssp             SSEECCBGGG-CC-CCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEES
T ss_pred             CCceeeecCc-cc-ccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccC
Confidence            8888866665 33 4788888888888888888888888888888888888888888876 788888888888887 444

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=1.7e-44  Score=410.04  Aligned_cols=393  Identities=18%  Similarity=0.191  Sum_probs=263.7

Q ss_pred             CCcccee--eeeCCCCCcEEEEEcCCCCCccccCcccCCCCCCcEEEccCCCCCCCCCCCCCCCCCCCEEECCCCcCcCC
Q 045449           38 SVCIWIG--ITCDVNSHRVIGLNISSFNLQGTITPQLGNLSSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQLFGS  115 (823)
Q Consensus        38 ~~c~w~g--v~c~~~~~~v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~  115 (823)
                      +.|.|.+  |.|+.            ++++ .+|. +  .++|++|||++|+|++..|..|+++++|++|+|++|.+.+.
T Consensus         6 ~~c~~~~~~~~c~~------------~~l~-~lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~   69 (455)
T 3v47_A            6 SECSVIGYNAICIN------------RGLH-QVPE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLV   69 (455)
T ss_dssp             -CCEEETTEEECCS------------SCCS-SCCC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCE
T ss_pred             ceeEEEccccCcCC------------CCcc-cCCC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccce
Confidence            4577766  66653            2333 3444 2  26788888888888887788888888888888888888755


Q ss_pred             C-chhhhcCCCCcEEecccccccCccCccccCCCCCCccccccceeeeccceeeccCccccccchhhHHHHHhhcCCCcc
Q 045449          116 L-SSFIFNMSSMTTIDLSINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEIGNLTKLKEIISTITNSTVC  194 (823)
Q Consensus       116 ~-p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~~l~~n~~~~  194 (823)
                      + +..|.++++|++|+|++|++++..|..+       +++++|++|+|++|++++.+|..                    
T Consensus        70 i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-------~~l~~L~~L~L~~n~l~~~~~~~--------------------  122 (455)
T 3v47_A           70 IRNNTFRGLSSLIILKLDYNQFLQLETGAF-------NGLANLEVLTLTQCNLDGAVLSG--------------------  122 (455)
T ss_dssp             ECTTTTTTCTTCCEEECTTCTTCEECTTTT-------TTCTTCCEEECTTSCCBTHHHHS--------------------
T ss_pred             ECcccccccccCCEEeCCCCccCccChhhc-------cCcccCCEEeCCCCCCCccccCc--------------------
Confidence            5 5678888888888888888876655544       77888888888888887543321                    


Q ss_pred             cCCcccCCcchhhhhccccccccCCcccc-ccCCCCCcEEEccCCcccccCCccccc-CCCCccEEEeeccccccccCcc
Q 045449          195 EIPREIGNLPYLARLALATNNLVGVVPVT-IFNMSALKEISLLNNSLSGSLPSRIDL-SLPNVETLNLGINSFSGTIPSS  272 (823)
Q Consensus       195 ~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~L~Ls~N~l~g~lp~~~~~-~l~~L~~L~Ls~N~l~~~~p~~  272 (823)
                         ..+.++++|++|+|++|++++..|.. +.++++|++|++++|.+++..|..+.. ...+|+.|++++|.+.+..+..
T Consensus       123 ---~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~  199 (455)
T 3v47_A          123 ---NFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYW  199 (455)
T ss_dssp             ---STTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTC
T ss_pred             ---ccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhh
Confidence               22556667788888888888877766 778888888888888888666655543 1257778888888777554433


Q ss_pred             c--------cCCCCCCeEEeecccccccCCCccCCCcccCcccccCccccCCCCcccccccccCCCCceEEEeecCCCCc
Q 045449          273 I--------TNSSKLSDLELGENLFSGFIPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDG  344 (823)
Q Consensus       273 ~--------~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~  344 (823)
                      +        ..+++|++|++++|++++.+|..+..+                          ...++|+.|++++|.+.+
T Consensus       200 ~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~--------------------------~~~~~L~~L~l~~~~~~~  253 (455)
T 3v47_A          200 LGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDA--------------------------IAGTKIQSLILSNSYNMG  253 (455)
T ss_dssp             TTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHH--------------------------TTTCCEEEEECTTCTTTS
T ss_pred             ccccccccccccceeeeEecCCCcccccchhhhhcc--------------------------ccccceeeEeeccccccc
Confidence            2        244566666666666666555544332                          011344444444444332


Q ss_pred             cCCccccccccccceEEecCCcceeccCccccC--cccccEEEcccCcCCCCchhcccccCCCCEEEccCCCCCCcchHh
Q 045449          345 ILPKSIGNFSLSLETILMANCSISGNIPQVVGN--LSNLLVLELGGNNLTGPIPVTFSQLQTLQAFDLTRNKLAGPITDE  422 (823)
Q Consensus       345 ~~p~~~~~~~~~L~~L~L~~N~l~~~~p~~~~~--l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~  422 (823)
                      ...               ..+.+.+..+..+..  .++|++|++++|++++.+|..|..+++|++|+|++|++++..|..
T Consensus       254 ~~~---------------~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~  318 (455)
T 3v47_A          254 SSF---------------GHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNA  318 (455)
T ss_dssp             CCT---------------TCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTT
T ss_pred             ccc---------------chhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhH
Confidence            210               011111122222222  246677777777777666666777777777777777777666666


Q ss_pred             hhcCCCCCEEEcccCcCcccccccccCCCCCCeEeccCCccccccchhhhccCCCcEEeccccccccccCccccCCCCCc
Q 045449          423 LCHLARLHSLVLQGNKFSGSIPSCLGNLTSVRVLYLGLNIFTSVLSSTIWNLKDILFIDVSSNFLDGPLSLDIGNLKVVI  502 (823)
Q Consensus       423 ~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~  502 (823)
                      |.++++|++|+|++|.+++..|..|+++++|++|+|++|++++..|..+..+++|++|+|++|++++..+..+..++.|+
T Consensus       319 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  398 (455)
T 3v47_A          319 FWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQ  398 (455)
T ss_dssp             TTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred             hcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCccc
Confidence            77777777777777777766677777777777777777777777777777777777777777777766566667778888


Q ss_pred             EEEcccCCCCCCCCC
Q 045449          503 GLDFSRNNLSGDIPI  517 (823)
Q Consensus       503 ~L~ls~N~l~g~ip~  517 (823)
                      .|++++|+++|.+|.
T Consensus       399 ~L~l~~N~l~~~~~~  413 (455)
T 3v47_A          399 KIWLHTNPWDCSCPR  413 (455)
T ss_dssp             EEECCSSCBCCCTTT
T ss_pred             EEEccCCCcccCCCc
Confidence            888888888877763

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=1.3e-43  Score=402.72  Aligned_cols=393  Identities=18%  Similarity=0.215  Sum_probs=294.1

Q ss_pred             cEEEccCCCCCCCCCCCCCCCCCCCEEECCCCcCcCCCchhhhcCCCCcEEecccccccCccCccccCCCCCCccccccc
Q 045449           79 QTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQLFGSLSSFIFNMSSMTTIDLSINRLSGELPANICKIPSTLSKCKQLE  158 (823)
Q Consensus        79 ~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~p~~~~~l~~L~  158 (823)
                      +.++.+++.++ .+|. +  .++|++|||++|.|++..|..|+++++|++|+|++|.+.+.++..      .|.++++|+
T Consensus        13 ~~~~c~~~~l~-~lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~------~~~~l~~L~   82 (455)
T 3v47_A           13 YNAICINRGLH-QVPE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNN------TFRGLSSLI   82 (455)
T ss_dssp             TEEECCSSCCS-SCCC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTT------TTTTCTTCC
T ss_pred             cccCcCCCCcc-cCCC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcc------cccccccCC
Confidence            46788888887 5665 3  278999999999999888999999999999999999887665432      257888899


Q ss_pred             eeeeccceeeccCccccccchhhHHHHHhhcCCCcccCCcccCCcchhhhhccccccccCCcccc--ccCCCCCcEEEcc
Q 045449          159 ELNLGFNNLSGAIPKEIGNLTKLKEIISTITNSTVCEIPREIGNLPYLARLALATNNLVGVVPVT--IFNMSALKEISLL  236 (823)
Q Consensus       159 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~~l~~n~~~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~--~~~l~~L~~L~Ls  236 (823)
                      +|+|++|++++..|..                         |+++++|++|+|++|++++..|..  |.++++|++|+|+
T Consensus        83 ~L~Ls~n~l~~~~~~~-------------------------~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~  137 (455)
T 3v47_A           83 ILKLDYNQFLQLETGA-------------------------FNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLR  137 (455)
T ss_dssp             EEECTTCTTCEECTTT-------------------------TTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECC
T ss_pred             EEeCCCCccCccChhh-------------------------ccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECC
Confidence            9999888887554433                         344455667777777777654443  6666666666666


Q ss_pred             CCcccccCCcccccCCCCccEEEeeccccccccCccccCC--CCCCeEEeecccccccCCCccCCCcccCcccccCcccc
Q 045449          237 NNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSITNS--SKLSDLELGENLFSGFIPNTIGNLRNLEFGNIADNYLT  314 (823)
Q Consensus       237 ~N~l~g~lp~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l--~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~  314 (823)
                      +|.+++..|..++..+++|++|+|++|++++..|..+..+  .+|+.|++++|.+.+..+..++                
T Consensus       138 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~----------------  201 (455)
T 3v47_A          138 DNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLG----------------  201 (455)
T ss_dssp             SSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTT----------------
T ss_pred             CCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhcc----------------
Confidence            6666655555433346666666666666665555555544  3455555555555543322211                


Q ss_pred             CCCCcccccccccCCCCceEEEeecCCCCccCCccccccc--cccceEEecCCcceeccCccccCcccccEEEcccCcCC
Q 045449          315 SSTPELSFLSSLTNCKKLKVLIVTGNPLDGILPKSIGNFS--LSLETILMANCSISGNIPQVVGNLSNLLVLELGGNNLT  392 (823)
Q Consensus       315 ~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~--~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  392 (823)
                           ......+..+++|+.|++++|.+++..|..+....  .+|+.|++++|.+.+..              +..+.+.
T Consensus       202 -----~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--------------~~~~~~~  262 (455)
T 3v47_A          202 -----WEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSS--------------FGHTNFK  262 (455)
T ss_dssp             -----HHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCC--------------TTCCSSC
T ss_pred             -----ccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccc--------------cchhhhc
Confidence                 00122345668899999999999988887775431  46788888887765431              2334444


Q ss_pred             CCchhccccc--CCCCEEEccCCCCCCcchHhhhcCCCCCEEEcccCcCcccccccccCCCCCCeEeccCCccccccchh
Q 045449          393 GPIPVTFSQL--QTLQAFDLTRNKLAGPITDELCHLARLHSLVLQGNKFSGSIPSCLGNLTSVRVLYLGLNIFTSVLSST  470 (823)
Q Consensus       393 g~~p~~~~~l--~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~  470 (823)
                      +..+..+..+  ++|++|++++|++++.+|..|..+++|+.|+|++|++++..|..|.++++|++|+|++|.+++..|..
T Consensus       263 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  342 (455)
T 3v47_A          263 DPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRM  342 (455)
T ss_dssp             CCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGG
T ss_pred             cCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhH
Confidence            4444445443  68999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhccCCCcEEeccccccccccCccccCCCCCcEEEcccCCCCCCCCCcccCccCCCCCCCCCCCcccccCCcccCCCCC
Q 045449          471 IWNLKDILFIDVSSNFLDGPLSLDIGNLKVVIGLDFSRNNLSGDIPITIGEGEIPRGGPFANLTAKSFMGNELLCGLPD  549 (823)
Q Consensus       471 ~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~ip~~~~~g~ip~~~~~~~~~~~~~~~n~~~c~~~~  549 (823)
                      +..+++|+.|||++|.+++..|..+..++.|++|++++|++++..+..+        ..+..+..+.+.+|++.|..|.
T Consensus       343 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--------~~l~~L~~L~l~~N~l~~~~~~  413 (455)
T 3v47_A          343 FENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIF--------DRLTSLQKIWLHTNPWDCSCPR  413 (455)
T ss_dssp             GTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTT--------TTCTTCCEEECCSSCBCCCTTT
T ss_pred             hcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHh--------ccCCcccEEEccCCCcccCCCc
Confidence            9999999999999999999999999999999999999999995333222        2356788889999999999874

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=5.5e-44  Score=416.79  Aligned_cols=438  Identities=20%  Similarity=0.199  Sum_probs=361.0

Q ss_pred             CcEEEEEcCCCCCccccCcccCCCCCCcEEEccCCCCCCCCCCCCCCCCCCCEEECCCCcCcCCCchhhhcCCCCcEEec
Q 045449           52 HRVIGLNISSFNLQGTITPQLGNLSSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQLFGSLSSFIFNMSSMTTIDL  131 (823)
Q Consensus        52 ~~v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  131 (823)
                      .+++.|+|++|.+++..+.+|.++++|++|+|++|+|++..|..|.++++|++|||++|+|+ .+|..  .+++|++|||
T Consensus        52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L  128 (562)
T 3a79_B           52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDL  128 (562)
T ss_dssp             TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEEC
T ss_pred             CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEEC
Confidence            57899999999999888889999999999999999999999999999999999999999998 45655  8999999999


Q ss_pred             ccccccC-ccCccccCCCCCCccccccceeeeccceeeccCccccccchhh--HHHHHhhcCCC--cccCCcccCCcc--
Q 045449          132 SINRLSG-ELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEIGNLTKL--KEIISTITNST--VCEIPREIGNLP--  204 (823)
Q Consensus       132 s~N~l~~-~~p~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L--~~L~~l~~n~~--~~~ip~~l~~l~--  204 (823)
                      ++|++++ .+|..       |+++++|++|+|++|++++.   .+..+++|  ++|. +..|.+  .+..|..+..+.  
T Consensus       129 s~N~l~~l~~p~~-------~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~-L~~n~l~~~~~~~~~l~~l~~~  197 (562)
T 3a79_B          129 SFNDFDVLPVCKE-------FGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCIL-LDLVSYHIKGGETESLQIPNTT  197 (562)
T ss_dssp             CSSCCSBCCCCGG-------GGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEE-EEESSCCCCSSSCCEEEECCEE
T ss_pred             CCCCccccCchHh-------hcccCcccEEecCCCccccC---chhhhhhceeeEEE-eecccccccccCcccccccCcc
Confidence            9999985 33444       48999999999999999864   44555555  7775 888888  888888888765  


Q ss_pred             hhhhhccccccccCCccc-cccCCCCCcEEEccCCc-----ccccCCcccccCCCCccEEEeecccccccc----Ccccc
Q 045449          205 YLARLALATNNLVGVVPV-TIFNMSALKEISLLNNS-----LSGSLPSRIDLSLPNVETLNLGINSFSGTI----PSSIT  274 (823)
Q Consensus       205 ~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~Ls~N~-----l~g~lp~~~~~~l~~L~~L~Ls~N~l~~~~----p~~~~  274 (823)
                      .+ .++++.|.+.+.++. .+.++++|+.|++++|.     +.+.++ .+. .+++|+.|+|+++.+++..    +..+ 
T Consensus       198 ~l-~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~-~l~-~l~~L~~L~L~~~~l~~~~~~~~~~~~-  273 (562)
T 3a79_B          198 VL-HLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLS-ELT-RGPTLLNVTLQHIETTWKCSVKLFQFF-  273 (562)
T ss_dssp             EE-EEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHH-HHH-SCSSCEEEEEEEEEECHHHHHHHHHHH-
T ss_pred             eE-EEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHH-HHh-ccCcceEEEecCCcCcHHHHHHHHHhh-
Confidence            34 568999999887665 45678999999999995     333222 233 4889999999888776432    2222 


Q ss_pred             CCCCCCeEEeecccccccCCCcc-----CCCcccCcccccCccccCCCCcccccccccCCCCceEEEeecCCCCccCCcc
Q 045449          275 NSSKLSDLELGENLFSGFIPNTI-----GNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGILPKS  349 (823)
Q Consensus       275 ~l~~L~~L~Ls~N~l~~~~p~~~-----~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~  349 (823)
                      ..++|++|++++|.++|.+|..+     ..++.|+.++++.|.+ ..+.+  ....+....+|+.|++++|.+.....  
T Consensus       274 ~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~-~~p~~--~~~~~~~~~~L~~L~l~~n~~~~~~~--  348 (562)
T 3a79_B          274 WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF-LFSKE--ALYSVFAEMNIKMLSISDTPFIHMVC--  348 (562)
T ss_dssp             TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC-SSCHH--HHHHHHHTCCCSEEEEESSCCCCCCC--
T ss_pred             hcccccEEEEeccEeeccccchhhhcccccchheehhhccccee-ecChh--hhhhhhccCcceEEEccCCCcccccC--
Confidence            23489999999999999999888     7888888888888877 22111  11112223679999999999864421  


Q ss_pred             ccccccccceEEecCCcceeccCccccCcccccEEEcccCcCCCC--chhcccccCCCCEEEccCCCCCCcchH-hhhcC
Q 045449          350 IGNFSLSLETILMANCSISGNIPQVVGNLSNLLVLELGGNNLTGP--IPVTFSQLQTLQAFDLTRNKLAGPITD-ELCHL  426 (823)
Q Consensus       350 ~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~--~p~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~~l  426 (823)
                      ...+ ++|++|++++|++++.+|..+.++++|++|+|++|++++.  +|..+..+++|++|+|++|++++.+|. .+..+
T Consensus       349 ~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l  427 (562)
T 3a79_B          349 PPSP-SSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWA  427 (562)
T ss_dssp             CSSC-CCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCC
T ss_pred             ccCC-CCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCc
Confidence            1344 7899999999999999999999999999999999999973  467799999999999999999985665 48889


Q ss_pred             CCCCEEEcccCcCcccccccccCCCCCCeEeccCCccccccchhhhccCCCcEEeccccccccccCcc-ccCCCCCcEEE
Q 045449          427 ARLHSLVLQGNKFSGSIPSCLGNLTSVRVLYLGLNIFTSVLSSTIWNLKDILFIDVSSNFLDGPLSLD-IGNLKVVIGLD  505 (823)
Q Consensus       427 ~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~~p~~-~~~l~~L~~L~  505 (823)
                      ++|+.|+|++|++++.+|..+.  ++|+.|+|++|+++. +|..++.+++|+.|||++|+++ .+|.. +..++.|+.|+
T Consensus       428 ~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~-ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~  503 (562)
T 3a79_B          428 ESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMS-IPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIW  503 (562)
T ss_dssp             TTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCC-CCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEE
T ss_pred             ccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcc-cChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEE
Confidence            9999999999999998887765  789999999999995 7777779999999999999999 56665 99999999999


Q ss_pred             cccCCCCCCCCC
Q 045449          506 FSRNNLSGDIPI  517 (823)
Q Consensus       506 ls~N~l~g~ip~  517 (823)
                      +++|+++|.+|.
T Consensus       504 l~~N~~~c~c~~  515 (562)
T 3a79_B          504 LHDNPWDCTCPG  515 (562)
T ss_dssp             CCSCCBCCCHHH
T ss_pred             ecCCCcCCCcch
Confidence            999999988764

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=6.6e-43  Score=394.85  Aligned_cols=377  Identities=22%  Similarity=0.279  Sum_probs=205.5

Q ss_pred             CcEEEEEcCCCCCccccCcccCCCCCCcEEEccCCCCCCCCCCCCCCCCCC-------------CEEECCCCcCcCCCch
Q 045449           52 HRVIGLNISSFNLQGTITPQLGNLSSLQTLDLSHNKLSGNIPSSIFNMHTL-------------KLLDFSDNQLFGSLSS  118 (823)
Q Consensus        52 ~~v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L-------------~~L~Ls~N~l~~~~p~  118 (823)
                      .++++|++++|++ |.+|++++++++|++|+|++|+++|.+|.+++++++|             ++|++++|.+++. |.
T Consensus        11 ~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~l-p~   88 (454)
T 1jl5_A           11 TFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSL-PE   88 (454)
T ss_dssp             ------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCC-CS
T ss_pred             ccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccC-CC
Confidence            4688899999999 8899999999999999999999999999999988865             8899999988863 33


Q ss_pred             hhhcCCCCcEEecccccccCccCccccCCCCCCccccccceeeeccceeeccCccccccchhhHHHHHhhcCCCcccCCc
Q 045449          119 FIFNMSSMTTIDLSINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEIGNLTKLKEIISTITNSTVCEIPR  198 (823)
Q Consensus       119 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~~l~~n~~~~~ip~  198 (823)
                      .   .++|++|+|++|++++ +|..          +++|++|++++|++++ +|...                       
T Consensus        89 ~---~~~L~~L~l~~n~l~~-lp~~----------~~~L~~L~l~~n~l~~-l~~~~-----------------------  130 (454)
T 1jl5_A           89 L---PPHLESLVASCNSLTE-LPEL----------PQSLKSLLVDNNNLKA-LSDLP-----------------------  130 (454)
T ss_dssp             C---CTTCSEEECCSSCCSS-CCCC----------CTTCCEEECCSSCCSC-CCSCC-----------------------
T ss_pred             C---cCCCCEEEccCCcCCc-cccc----------cCCCcEEECCCCccCc-ccCCC-----------------------
Confidence            2   3688999999998885 5532          2678899999988874 22211                       


Q ss_pred             ccCCcchhhhhccccccccCCccccccCCCCCcEEEccCCcccccCCcccccCCCCccEEEeeccccccccCccccCCCC
Q 045449          199 EIGNLPYLARLALATNNLVGVVPVTIFNMSALKEISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSITNSSK  278 (823)
Q Consensus       199 ~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~lp~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  278 (823)
                           ++|++|++++|++++ +| .|.++++|++|++++|++++ +|..    .++|++|++++|++++ +| .+.++++
T Consensus       131 -----~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~----~~~L~~L~L~~n~l~~-l~-~~~~l~~  196 (454)
T 1jl5_A          131 -----PLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDL----PPSLEFIAAGNNQLEE-LP-ELQNLPF  196 (454)
T ss_dssp             -----TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCC----CTTCCEEECCSSCCSS-CC-CCTTCTT
T ss_pred             -----CCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCC----cccccEEECcCCcCCc-Cc-cccCCCC
Confidence                 345566666666664 44 36666666666666666653 4432    2356666666666664 34 4666666


Q ss_pred             CCeEEeecccccccCCCccCCCcccCcccccCccccCCCCcccccccccCCCCceEEEeecCCCCccCCccccccccccc
Q 045449          279 LSDLELGENLFSGFIPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGILPKSIGNFSLSLE  358 (823)
Q Consensus       279 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~  358 (823)
                      |++|++++|++++ +|...   ++|++|++++|.++..      + .+..+++|+.|++++|++++ +|..    +.+|+
T Consensus       197 L~~L~l~~N~l~~-l~~~~---~~L~~L~l~~n~l~~l------p-~~~~l~~L~~L~l~~N~l~~-l~~~----~~~L~  260 (454)
T 1jl5_A          197 LTAIYADNNSLKK-LPDLP---LSLESIVAGNNILEEL------P-ELQNLPFLTTIYADNNLLKT-LPDL----PPSLE  260 (454)
T ss_dssp             CCEEECCSSCCSS-CCCCC---TTCCEEECCSSCCSSC------C-CCTTCTTCCEEECCSSCCSS-CCSC----CTTCC
T ss_pred             CCEEECCCCcCCc-CCCCc---CcccEEECcCCcCCcc------c-ccCCCCCCCEEECCCCcCCc-cccc----ccccC
Confidence            6666666666664 23222   3566666666666532      2 25566666666666666664 2321    14566


Q ss_pred             eEEecCCcceeccCccccCcccccEEEcccCcCCCCchhcccccCCCCEEEccCCCCCCcchHhhhcC-CCCCEEEcccC
Q 045449          359 TILMANCSISGNIPQVVGNLSNLLVLELGGNNLTGPIPVTFSQLQTLQAFDLTRNKLAGPITDELCHL-ARLHSLVLQGN  437 (823)
Q Consensus       359 ~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l-~~L~~L~Ls~N  437 (823)
                      +|++++|++++ +|..   .++|++|++++|++++ +|..   .++|++|++++|++++. +    .+ ++|+.|++++|
T Consensus       261 ~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~-l~~~---~~~L~~L~l~~N~l~~i-~----~~~~~L~~L~Ls~N  327 (454)
T 1jl5_A          261 ALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSG-LSEL---PPNLYYLNASSNEIRSL-C----DLPPSLEELNVSNN  327 (454)
T ss_dssp             EEECCSSCCSC-CCCC---CTTCCEEECCSSCCSE-ESCC---CTTCCEEECCSSCCSEE-C----CCCTTCCEEECCSS
T ss_pred             EEECCCCcccc-cCcc---cCcCCEEECcCCccCc-ccCc---CCcCCEEECcCCcCCcc-c----CCcCcCCEEECCCC
Confidence            66666666664 3332   2556666666666664 2211   14566666666666642 1    22 35666666666


Q ss_pred             cCcccccccccCCCCCCeEeccCCccccccchhhhccCCCcEEecccccccc--ccCccccCC-------------CCCc
Q 045449          438 KFSGSIPSCLGNLTSVRVLYLGLNIFTSVLSSTIWNLKDILFIDVSSNFLDG--PLSLDIGNL-------------KVVI  502 (823)
Q Consensus       438 ~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g--~~p~~~~~l-------------~~L~  502 (823)
                      ++++ +|..   +++|+.|++++|++++ +|.   .+++|++|++++|++++  .+|.+++.+             +.|+
T Consensus       328 ~l~~-lp~~---~~~L~~L~L~~N~l~~-lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~  399 (454)
T 1jl5_A          328 KLIE-LPAL---PPRLERLIASFNHLAE-VPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLK  399 (454)
T ss_dssp             CCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC-------------
T ss_pred             cccc-cccc---CCcCCEEECCCCcccc-ccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCC
Confidence            6664 4443   3556666666666664 333   35666666666666666  566666555             7899


Q ss_pred             EEEcccCCCCC--CCCCcc
Q 045449          503 GLDFSRNNLSG--DIPITI  519 (823)
Q Consensus       503 ~L~ls~N~l~g--~ip~~~  519 (823)
                      .||+++|+++|  .||.++
T Consensus       400 ~L~ls~N~l~~~~~iP~sl  418 (454)
T 1jl5_A          400 QLHVETNPLREFPDIPESV  418 (454)
T ss_dssp             -------------------
T ss_pred             EEECCCCcCCccccchhhH
Confidence            99999999997  666554

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=6.8e-43  Score=394.74  Aligned_cols=385  Identities=24%  Similarity=0.274  Sum_probs=242.6

Q ss_pred             cEEEEEcCCCCCccccCcccCCCCCC-------------cEEEccCCCCCCCCCCCCCCCCCCCEEECCCCcCcCCCchh
Q 045449           53 RVIGLNISSFNLQGTITPQLGNLSSL-------------QTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQLFGSLSSF  119 (823)
Q Consensus        53 ~v~~L~L~~~~l~g~~~~~l~~l~~L-------------~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~  119 (823)
                      +++.|++++|.+.|.+|.+++++++|             ++|++++|++++ +|..   .++|++|+|++|.+++ +|..
T Consensus        35 ~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp~~---~~~L~~L~l~~n~l~~-lp~~  109 (454)
T 1jl5_A           35 SKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LPEL---PPHLESLVASCNSLTE-LPEL  109 (454)
T ss_dssp             CHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-CCSC---CTTCSEEECCSSCCSS-CCCC
T ss_pred             chhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-CCCC---cCCCCEEEccCCcCCc-cccc
Confidence            57789999999999999999999875             999999999996 4442   3789999999999998 6653


Q ss_pred             hhcCCCCcEEecccccccCccCccccCCCCCCccccccceeeeccceeeccCccccccchhhHHHHHhhcCCCcccCCcc
Q 045449          120 IFNMSSMTTIDLSINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEIGNLTKLKEIISTITNSTVCEIPRE  199 (823)
Q Consensus       120 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~~l~~n~~~~~ip~~  199 (823)
                         +++|++|++++|++++ +|.    +      .++|++|+|++|++++ +| +|+++++|++|. +.+|.+.+ +|..
T Consensus       110 ---~~~L~~L~l~~n~l~~-l~~----~------~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~-l~~N~l~~-lp~~  171 (454)
T 1jl5_A          110 ---PQSLKSLLVDNNNLKA-LSD----L------PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIID-VDNNSLKK-LPDL  171 (454)
T ss_dssp             ---CTTCCEEECCSSCCSC-CCS----C------CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEE-CCSSCCSC-CCCC
T ss_pred             ---cCCCcEEECCCCccCc-ccC----C------CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEE-CCCCcCcc-cCCC
Confidence               4899999999999984 221    1      1689999999999996 77 588888887774 66666554 5654


Q ss_pred             cCCcchhhhhccccccccCCccccccCCCCCcEEEccCCcccccCCcccccCCCCccEEEeeccccccccCccccCCCCC
Q 045449          200 IGNLPYLARLALATNNLVGVVPVTIFNMSALKEISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSITNSSKL  279 (823)
Q Consensus       200 l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~lp~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L  279 (823)
                      +   .+|++|++++|++++ +| .+.++++|++|++++|.+++ +|..    .++|++|++++|+++ .+|. +..+++|
T Consensus       172 ~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~----~~~L~~L~l~~n~l~-~lp~-~~~l~~L  239 (454)
T 1jl5_A          172 P---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL----PLSLESIVAGNNILE-ELPE-LQNLPFL  239 (454)
T ss_dssp             C---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC----CTTCCEEECCSSCCS-SCCC-CTTCTTC
T ss_pred             c---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC----cCcccEEECcCCcCC-cccc-cCCCCCC
Confidence            4   367777888888776 45 57777888888888888773 5542    347788888888777 5663 7777788


Q ss_pred             CeEEeecccccccCCCccCCCcccCcccccCccccCCCCcccccccccCCCCceEEEeecCCCCccCCccccccccccce
Q 045449          280 SDLELGENLFSGFIPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGILPKSIGNFSLSLET  359 (823)
Q Consensus       280 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~  359 (823)
                      ++|++++|++++ +|..   +++|+.|++++|++++.+.         ..++|+.|++++|.+++. |    ..+.+|++
T Consensus       240 ~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~l~~---------~~~~L~~L~ls~N~l~~l-~----~~~~~L~~  301 (454)
T 1jl5_A          240 TTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTDLPE---------LPQSLTFLDVSENIFSGL-S----ELPPNLYY  301 (454)
T ss_dssp             CEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSCCCC---------CCTTCCEEECCSSCCSEE-S----CCCTTCCE
T ss_pred             CEEECCCCcCCc-cccc---ccccCEEECCCCcccccCc---------ccCcCCEEECcCCccCcc-c----CcCCcCCE
Confidence            888888887775 3432   3677778888887776422         126777788888877762 1    12256777


Q ss_pred             EEecCCcceeccCccccCcccccEEEcccCcCCCCchhcccccCCCCEEEccCCCCCCcchHhhhcCCCCCEEEcccCcC
Q 045449          360 ILMANCSISGNIPQVVGNLSNLLVLELGGNNLTGPIPVTFSQLQTLQAFDLTRNKLAGPITDELCHLARLHSLVLQGNKF  439 (823)
Q Consensus       360 L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l  439 (823)
                      |++++|++++. +..   .++|++|++++|++++ +|..   +++|++|++++|++++ +|.   .+++|++|++++|++
T Consensus       302 L~l~~N~l~~i-~~~---~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~-lp~---~l~~L~~L~L~~N~l  369 (454)
T 1jl5_A          302 LNASSNEIRSL-CDL---PPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAE-VPE---LPQNLKQLHVEYNPL  369 (454)
T ss_dssp             EECCSSCCSEE-CCC---CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCC
T ss_pred             EECcCCcCCcc-cCC---cCcCCEEECCCCcccc-cccc---CCcCCEEECCCCcccc-ccc---hhhhccEEECCCCCC
Confidence            77777777752 211   1477777787777775 5543   4677777777777774 444   357777777777777


Q ss_pred             cc--cccccccCCCCCCeEeccCCccccccchhhhccCCCcEEecccccccc--ccCccccCCCCCcEEEcccCCCCCCC
Q 045449          440 SG--SIPSCLGNLTSVRVLYLGLNIFTSVLSSTIWNLKDILFIDVSSNFLDG--PLSLDIGNLKVVIGLDFSRNNLSGDI  515 (823)
Q Consensus       440 ~g--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g--~~p~~~~~l~~L~~L~ls~N~l~g~i  515 (823)
                      ++  .+|.+++.        |+.|.+.|.+|..   +++|+.||+++|++++  .+|.+      ++.|.+++|.+.+.+
T Consensus       370 ~~l~~ip~~l~~--------L~~n~~~~~i~~~---~~~L~~L~ls~N~l~~~~~iP~s------l~~L~~~~~~~~~~~  432 (454)
T 1jl5_A          370 REFPDIPESVED--------LRMNSHLAEVPEL---PQNLKQLHVETNPLREFPDIPES------VEDLRMNSERVVDPY  432 (454)
T ss_dssp             SSCCCCCTTCCE--------EECCC-------------------------------------------------------
T ss_pred             CcCCCChHHHHh--------hhhcccccccccc---cCcCCEEECCCCcCCccccchhh------HhheeCcCcccCCcc
Confidence            77  56655543        3346666666653   4789999999999998  77765      455678888888766


Q ss_pred             CCcc
Q 045449          516 PITI  519 (823)
Q Consensus       516 p~~~  519 (823)
                      |...
T Consensus       433 ~~~~  436 (454)
T 1jl5_A          433 EFAH  436 (454)
T ss_dssp             ----
T ss_pred             ccCH
Confidence            6443

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=1.6e-41  Score=402.04  Aligned_cols=443  Identities=18%  Similarity=0.159  Sum_probs=360.9

Q ss_pred             cEEEEEcCCCCCccccCcccCCCCCCcEEEccCCCCCCCCCCCCCCCCCCCEEECCCCcCcCCCchhhhcCCCCcEEecc
Q 045449           53 RVIGLNISSFNLQGTITPQLGNLSSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQLFGSLSSFIFNMSSMTTIDLS  132 (823)
Q Consensus        53 ~v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls  132 (823)
                      +++.|||++|+|++..+.+|.++++|++|+|++|+|++..+..|.++++|++|+|++|+|++..+..|+++++|++|+|+
T Consensus        77 ~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls  156 (635)
T 4g8a_A           77 ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVA  156 (635)
T ss_dssp             TCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECC
T ss_pred             CCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccc
Confidence            68999999999998888889999999999999999998888899999999999999999999888899999999999999


Q ss_pred             cccccCc-cCccccCCCCCCccccccceeeeccceeeccCccccccchhhHHHH---HhhcCCCcccCCcccCCcchhhh
Q 045449          133 INRLSGE-LPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEIGNLTKLKEII---STITNSTVCEIPREIGNLPYLAR  208 (823)
Q Consensus       133 ~N~l~~~-~p~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~---~l~~n~~~~~ip~~l~~l~~L~~  208 (823)
                      +|++++. +|.       .++.+++|++|+|++|++++..|..|..+.+++.+.   .+..|.+....+..+. ...+..
T Consensus       157 ~N~l~~~~~~~-------~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~-~~~~~~  228 (635)
T 4g8a_A          157 HNLIQSFKLPE-------YFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLHK  228 (635)
T ss_dssp             SSCCCCCCCCG-------GGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTT-TCEEEE
T ss_pred             cCccccCCCch-------hhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCccccc-chhhhh
Confidence            9999753 344       348899999999999999998888888777655321   1233444333233222 223334


Q ss_pred             hccccccccC----------------------------------------------------------CccccccCCCCC
Q 045449          209 LALATNNLVG----------------------------------------------------------VVPVTIFNMSAL  230 (823)
Q Consensus       209 L~Ls~N~l~~----------------------------------------------------------~~p~~~~~l~~L  230 (823)
                      +++.+|....                                                          ..+..+..+.++
T Consensus       229 l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l  308 (635)
T 4g8a_A          229 LTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNV  308 (635)
T ss_dssp             EEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTC
T ss_pred             hhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhccc
Confidence            4444332210                                                          011223345567


Q ss_pred             cEEEccCCcccccCCcccccCCCCccEEEeeccccccccCccccCCCCCCeEEeecccccccCCCccCCCcccCcccccC
Q 045449          231 KEISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSITNSSKLSDLELGENLFSGFIPNTIGNLRNLEFGNIAD  310 (823)
Q Consensus       231 ~~L~Ls~N~l~g~lp~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~  310 (823)
                      +.+++.+|.+.+ ++. + .....|+.|++++|.+.+..+.   .+..|+.++++.|.+...  .....+++|+.|++++
T Consensus       309 ~~l~~~~~~~~~-~~~-~-~~~~~L~~L~l~~~~~~~~~~~---~l~~L~~l~l~~n~~~~~--~~~~~l~~L~~L~ls~  380 (635)
T 4g8a_A          309 SSFSLVSVTIER-VKD-F-SYNFGWQHLELVNCKFGQFPTL---KLKSLKRLTFTSNKGGNA--FSEVDLPSLEFLDLSR  380 (635)
T ss_dssp             SEEEEESCEEEE-CGG-G-GSCCCCSEEEEESCEESSCCCC---BCTTCCEEEEESCCSCCB--CCCCBCTTCCEEECCS
T ss_pred             cccccccccccc-ccc-c-ccchhhhhhhcccccccCcCcc---cchhhhhcccccccCCCC--cccccccccccchhhc
Confidence            777777777763 332 2 2367899999999999865443   467799999999988754  3456899999999999


Q ss_pred             ccccCCCCcccccccccCCCCceEEEeecCCCCccCCccccccccccceEEecCCcceeccC-ccccCcccccEEEcccC
Q 045449          311 NYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGILPKSIGNFSLSLETILMANCSISGNIP-QVVGNLSNLLVLELGGN  389 (823)
Q Consensus       311 N~l~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~Ls~N  389 (823)
                      |.+.....   .+..+..+.+|+.++++.|.+.+. +..+..+ .+|+.++++.|++....+ ..|..+++++.++++.|
T Consensus       381 n~l~~~~~---~~~~~~~~~~L~~L~~~~~~~~~~-~~~~~~l-~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n  455 (635)
T 4g8a_A          381 NGLSFKGC---CSQSDFGTISLKYLDLSFNGVITM-SSNFLGL-EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT  455 (635)
T ss_dssp             SCCBEEEE---CCHHHHSCSCCCEEECCSCSEEEE-CSCCTTC-TTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTS
T ss_pred             cccccccc---cccchhhhhhhhhhhccccccccc-ccccccc-ccccchhhhhcccccccccccccccccccccccccc
Confidence            99875421   344566788999999999998764 4456666 799999999998877654 56889999999999999


Q ss_pred             cCCCCchhcccccCCCCEEEccCCCC-CCcchHhhhcCCCCCEEEcccCcCcccccccccCCCCCCeEeccCCccccccc
Q 045449          390 NLTGPIPVTFSQLQTLQAFDLTRNKL-AGPITDELCHLARLHSLVLQGNKFSGSIPSCLGNLTSVRVLYLGLNIFTSVLS  468 (823)
Q Consensus       390 ~l~g~~p~~~~~l~~L~~L~Ls~N~l-~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p  468 (823)
                      ++.+..+..+..+++|++|+|++|++ .+.+|..|..+++|++|+|++|+|++.+|..|.++++|++|+|++|+|++.+|
T Consensus       456 ~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~  535 (635)
T 4g8a_A          456 HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDT  535 (635)
T ss_dssp             CCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCC
T ss_pred             ccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCCh
Confidence            99999999999999999999999985 44678889999999999999999999999999999999999999999999999


Q ss_pred             hhhhccCCCcEEeccccccccccCccccCC-CCCcEEEcccCCCCCCCC
Q 045449          469 STIWNLKDILFIDVSSNFLDGPLSLDIGNL-KVVIGLDFSRNNLSGDIP  516 (823)
Q Consensus       469 ~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l-~~L~~L~ls~N~l~g~ip  516 (823)
                      ..+..+++|++|||++|+|++..|..+..+ ++|+.|+|++|+|++...
T Consensus       536 ~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~  584 (635)
T 4g8a_A          536 FPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE  584 (635)
T ss_dssp             GGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGG
T ss_pred             hHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCC
Confidence            999999999999999999999999999988 789999999999998654

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=1.1e-41  Score=385.30  Aligned_cols=353  Identities=17%  Similarity=0.188  Sum_probs=257.4

Q ss_pred             cEEEEEcCCCCCccccCcccCCCCCCcEEEccCCCCCCCCCCCCCCCCCCCEEECCCCcCcCCCchhhhcCCCCcEEecc
Q 045449           53 RVIGLNISSFNLQGTITPQLGNLSSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQLFGSLSSFIFNMSSMTTIDLS  132 (823)
Q Consensus        53 ~v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls  132 (823)
                      +++.|++++|++++. | .++.+++|++|+|++|+|++. |  ++.+++|++|+|++|.|++. +  ++++++|++|+|+
T Consensus        43 ~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~  114 (457)
T 3bz5_A           43 TLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCD  114 (457)
T ss_dssp             TCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECC
T ss_pred             CCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECC
Confidence            566777777777754 3 577777777777777777753 3  67777777777777777664 2  6677777777777


Q ss_pred             cccccCccCccccCCCCCCccccccceeeeccceeeccCccccccchhhHHHHHhhcCCCcccCCcccCCcchhhhhccc
Q 045449          133 INRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEIGNLTKLKEIISTITNSTVCEIPREIGNLPYLARLALA  212 (823)
Q Consensus       133 ~N~l~~~~p~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~~l~~n~~~~~ip~~l~~l~~L~~L~Ls  212 (823)
                      +|++++ +|         ++.+++|++|++++|++++. +                           ++++++|++|+++
T Consensus       115 ~N~l~~-l~---------~~~l~~L~~L~l~~N~l~~l-~---------------------------l~~l~~L~~L~l~  156 (457)
T 3bz5_A          115 TNKLTK-LD---------VSQNPLLTYLNCARNTLTEI-D---------------------------VSHNTQLTELDCH  156 (457)
T ss_dssp             SSCCSC-CC---------CTTCTTCCEEECTTSCCSCC-C---------------------------CTTCTTCCEEECT
T ss_pred             CCcCCe-ec---------CCCCCcCCEEECCCCcccee-c---------------------------cccCCcCCEEECC
Confidence            777764 22         36667777777777776642 1                           3345567777777


Q ss_pred             cccccCCccccccCCCCCcEEEccCCcccccCCcccccCCCCccEEEeeccccccccCccccCCCCCCeEEeeccccccc
Q 045449          213 TNNLVGVVPVTIFNMSALKEISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSITNSSKLSDLELGENLFSGF  292 (823)
Q Consensus       213 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~lp~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~  292 (823)
                      +|+..+.+  .+..+++|++|++++|++++ +|  +. .+++|++|++++|++++.   .+..+++|++|++++|++++ 
T Consensus       157 ~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~--l~-~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-  226 (457)
T 3bz5_A          157 LNKKITKL--DVTPQTQLTTLDCSFNKITE-LD--VS-QNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-  226 (457)
T ss_dssp             TCSCCCCC--CCTTCTTCCEEECCSSCCCC-CC--CT-TCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-
T ss_pred             CCCccccc--ccccCCcCCEEECCCCccce-ec--cc-cCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-
Confidence            77655554  36677788888888888874 55  33 477788888888888764   37777788888888888877 


Q ss_pred             CCCccCCCcccCcccccCccccCCCCcccccccccCCCCceEEEeecCCCCccCCccccccccccceEEecCCcceeccC
Q 045449          293 IPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGILPKSIGNFSLSLETILMANCSISGNIP  372 (823)
Q Consensus       293 ~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~p  372 (823)
                      +|  ++.+++|++|++++|++++.+        +..+++|+.|++++|               +|++|++++|.+.+.+|
T Consensus       227 ip--~~~l~~L~~L~l~~N~l~~~~--------~~~l~~L~~L~l~~n---------------~L~~L~l~~n~~~~~~~  281 (457)
T 3bz5_A          227 ID--VTPLTQLTYFDCSVNPLTELD--------VSTLSKLTTLHCIQT---------------DLLEIDLTHNTQLIYFQ  281 (457)
T ss_dssp             CC--CTTCTTCSEEECCSSCCSCCC--------CTTCTTCCEEECTTC---------------CCSCCCCTTCTTCCEEE
T ss_pred             cC--ccccCCCCEEEeeCCcCCCcC--------HHHCCCCCEEeccCC---------------CCCEEECCCCccCCccc
Confidence            34  777788888888888887752        345677777777655               35567788888877776


Q ss_pred             ccccCcccccEEEcccCcCCCCchhcccccCCCCEEEccCCCCCCcchHhhhcCCCCCEEEcccCcCcccccccccCCCC
Q 045449          373 QVVGNLSNLLVLELGGNNLTGPIPVTFSQLQTLQAFDLTRNKLAGPITDELCHLARLHSLVLQGNKFSGSIPSCLGNLTS  452 (823)
Q Consensus       373 ~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~  452 (823)
                        ++.+++|+.|++++|.+.|.+|.   ...+|+.|++++|             ++|+.|+|++|+|++. +  ++++++
T Consensus       282 --~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~~-------------~~L~~L~L~~N~l~~l-~--l~~l~~  340 (457)
T 3bz5_A          282 --AEGCRKIKELDVTHNTQLYLLDC---QAAGITELDLSQN-------------PKLVYLYLNNTELTEL-D--VSHNTK  340 (457)
T ss_dssp             --CTTCTTCCCCCCTTCTTCCEEEC---TTCCCSCCCCTTC-------------TTCCEEECTTCCCSCC-C--CTTCTT
T ss_pred             --ccccccCCEEECCCCcccceecc---CCCcceEechhhc-------------ccCCEEECCCCccccc-c--cccCCc
Confidence              46788888888888888887775   3456666666665             5789999999999984 3  889999


Q ss_pred             CCeEeccCCccccccchhhhccCCCcEEeccccccccccCccccCCCCCcEEEcccCCCCCCCCCccc
Q 045449          453 VRVLYLGLNIFTSVLSSTIWNLKDILFIDVSSNFLDGPLSLDIGNLKVVIGLDFSRNNLSGDIPITIG  520 (823)
Q Consensus       453 L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~ip~~~~  520 (823)
                      |+.|++++|++++        ++.|..|++++|.++|.     +++..|..+++++|+|+|.||..+.
T Consensus       341 L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~~~  395 (457)
T 3bz5_A          341 LKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPDLL  395 (457)
T ss_dssp             CSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTTCB
T ss_pred             CcEEECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChhHh
Confidence            9999999999987        35677788999999987     3556778889999999988887653

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=4.5e-39  Score=366.26  Aligned_cols=343  Identities=24%  Similarity=0.382  Sum_probs=182.9

Q ss_pred             cEEEEEcCCCCCccccCcccCCCCCCcEEEccCCCCCCCCCCCCCCCCCCCEEECCCCcCcCCCchhhhcCCCCcEEecc
Q 045449           53 RVIGLNISSFNLQGTITPQLGNLSSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQLFGSLSSFIFNMSSMTTIDLS  132 (823)
Q Consensus        53 ~v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls  132 (823)
                      +++.|+++++++.. +| .+..+++|++|||++|.+++..|  +.++++|++|+|++|.+++..+  ++++++|++|+|+
T Consensus        47 ~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~  120 (466)
T 1o6v_A           47 QVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLF  120 (466)
T ss_dssp             TCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECC
T ss_pred             cccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEECC
Confidence            46667777766653 33 36666777777777777765433  6677777777777777765544  6667777777777


Q ss_pred             cccccCccCccccCCCCCCccccccceeeeccceeeccCccccccchhhHHHHHhhcCCCcccCCcccCCcchhhhhccc
Q 045449          133 INRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEIGNLTKLKEIISTITNSTVCEIPREIGNLPYLARLALA  212 (823)
Q Consensus       133 ~N~l~~~~p~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~~l~~n~~~~~ip~~l~~l~~L~~L~Ls  212 (823)
                      +|++++..+         +.++++|++|+|++|.+++ ++                          .++.+++|++|+++
T Consensus       121 ~n~l~~~~~---------~~~l~~L~~L~l~~n~l~~-~~--------------------------~~~~l~~L~~L~l~  164 (466)
T 1o6v_A          121 NNQITDIDP---------LKNLTNLNRLELSSNTISD-IS--------------------------ALSGLTSLQQLSFG  164 (466)
T ss_dssp             SSCCCCCGG---------GTTCTTCSEEEEEEEEECC-CG--------------------------GGTTCTTCSEEEEE
T ss_pred             CCCCCCChH---------HcCCCCCCEEECCCCccCC-Ch--------------------------hhccCCcccEeecC
Confidence            776664311         3566677777777776653 11                          12333444555553


Q ss_pred             cccccCCccccccCCCCCcEEEccCCcccccCCcccccCCCCccEEEeeccccccccCccccCCCCCCeEEeeccccccc
Q 045449          213 TNNLVGVVPVTIFNMSALKEISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSITNSSKLSDLELGENLFSGF  292 (823)
Q Consensus       213 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~lp~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~  292 (823)
                       |.+.+..+  +.++++|++|++++|.++ .++. +. .+++|++|++++|++++..|  ++.+++|+.|++++|+++  
T Consensus       165 -~~~~~~~~--~~~l~~L~~L~l~~n~l~-~~~~-l~-~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~--  234 (466)
T 1o6v_A          165 -NQVTDLKP--LANLTTLERLDISSNKVS-DISV-LA-KLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLK--  234 (466)
T ss_dssp             -ESCCCCGG--GTTCTTCCEEECCSSCCC-CCGG-GG-GCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC--
T ss_pred             -CcccCchh--hccCCCCCEEECcCCcCC-CChh-hc-cCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcc--
Confidence             33433222  555555555555555554 2221 11 24445555555444443333  334444444444444444  


Q ss_pred             CCCccCCCcccCcccccCccccCCCCcccccccccCCCCceEEEeecCCCCccCCccccccccccceEEecCCcceeccC
Q 045449          293 IPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGILPKSIGNFSLSLETILMANCSISGNIP  372 (823)
Q Consensus       293 ~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~p  372 (823)
                                            +.       ..+..+++|+.|++++|.+++..|  +..+ ++|++|++++|.+++..+
T Consensus       235 ----------------------~~-------~~l~~l~~L~~L~l~~n~l~~~~~--~~~l-~~L~~L~l~~n~l~~~~~  282 (466)
T 1o6v_A          235 ----------------------DI-------GTLASLTNLTDLDLANNQISNLAP--LSGL-TKLTELKLGANQISNISP  282 (466)
T ss_dssp             ----------------------CC-------GGGGGCTTCSEEECCSSCCCCCGG--GTTC-TTCSEEECCSSCCCCCGG
T ss_pred             ----------------------cc-------hhhhcCCCCCEEECCCCccccchh--hhcC-CCCCEEECCCCccCcccc
Confidence                                  32       123344444444445444444322  3333 344555555554444332


Q ss_pred             ccccCcccccEEEcccCcCCCCchhcccccCCCCEEEccCCCCCCcchHhhhcCCCCCEEEcccCcCcccccccccCCCC
Q 045449          373 QVVGNLSNLLVLELGGNNLTGPIPVTFSQLQTLQAFDLTRNKLAGPITDELCHLARLHSLVLQGNKFSGSIPSCLGNLTS  452 (823)
Q Consensus       373 ~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~  452 (823)
                        +..+++|++|++++|++++..+  +..+++|++|+|++|++++..|  +..+++|+.|++++|.+++.  ..+.++++
T Consensus       283 --~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~  354 (466)
T 1o6v_A          283 --LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTN  354 (466)
T ss_dssp             --GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTT
T ss_pred             --ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCC
Confidence              4455555666666666554333  4555556666666666655444  45555566666666655543  34555555


Q ss_pred             CCeEeccCCccccccchhhhccCCCcEEecccccccc
Q 045449          453 VRVLYLGLNIFTSVLSSTIWNLKDILFIDVSSNFLDG  489 (823)
Q Consensus       453 L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g  489 (823)
                      |+.|++++|++++.+|  +..+++|+.|++++|.+++
T Consensus       355 L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          355 INWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN  389 (466)
T ss_dssp             CCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred             CCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence            5555555555555544  5555555555555555554

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=9.6e-40  Score=369.27  Aligned_cols=333  Identities=17%  Similarity=0.153  Sum_probs=268.3

Q ss_pred             CcEEEEEcCCCCCccccCcccCCCCCCcEEEccCCCCCCCCCCCCCCCCCCCEEECCCCcCcCCCchhhhcCCCCcEEec
Q 045449           52 HRVIGLNISSFNLQGTITPQLGNLSSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQLFGSLSSFIFNMSSMTTIDL  131 (823)
Q Consensus        52 ~~v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  131 (823)
                      .+++.|+|++|++++. |  ++.+++|++|+|++|+|++. |  |+.+++|++|+|++|++++. |  ++.+++|++|+|
T Consensus        64 ~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l  134 (457)
T 3bz5_A           64 TGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLTKL-D--VSQNPLLTYLNC  134 (457)
T ss_dssp             TTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCSCC-C--CTTCTTCCEEEC
T ss_pred             CCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCCee-c--CCCCCcCCEEEC
Confidence            4789999999999985 3  99999999999999999975 4  99999999999999999974 4  899999999999


Q ss_pred             ccccccCccCccccCCCCCCccccccceeeeccceeeccCccccccchhhHHHHHhhcCCCcccCCcccCCcchhhhhcc
Q 045449          132 SINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEIGNLTKLKEIISTITNSTVCEIPREIGNLPYLARLAL  211 (823)
Q Consensus       132 s~N~l~~~~p~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~~l~~n~~~~~ip~~l~~l~~L~~L~L  211 (823)
                      ++|++++. +         ++.+++|++|++++|+..+.++                           ++.+++|++|++
T Consensus       135 ~~N~l~~l-~---------l~~l~~L~~L~l~~n~~~~~~~---------------------------~~~l~~L~~L~l  177 (457)
T 3bz5_A          135 ARNTLTEI-D---------VSHNTQLTELDCHLNKKITKLD---------------------------VTPQTQLTTLDC  177 (457)
T ss_dssp             TTSCCSCC-C---------CTTCTTCCEEECTTCSCCCCCC---------------------------CTTCTTCCEEEC
T ss_pred             CCCcccee-c---------cccCCcCCEEECCCCCcccccc---------------------------cccCCcCCEEEC
Confidence            99999863 2         3789999999999997554431                           345677889999


Q ss_pred             ccccccCCccccccCCCCCcEEEccCCcccccCCcccccCCCCccEEEeeccccccccCccccCCCCCCeEEeecccccc
Q 045449          212 ATNNLVGVVPVTIFNMSALKEISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSITNSSKLSDLELGENLFSG  291 (823)
Q Consensus       212 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~lp~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  291 (823)
                      ++|++++. |  +..+++|+.|++++|.+++ ++  +. .+++|++|+|++|++++ +|  +..+++|++|++++|++++
T Consensus       178 s~n~l~~l-~--l~~l~~L~~L~l~~N~l~~-~~--l~-~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~  247 (457)
T 3bz5_A          178 SFNKITEL-D--VSQNKLLNRLNCDTNNITK-LD--LN-QNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTE  247 (457)
T ss_dssp             CSSCCCCC-C--CTTCTTCCEEECCSSCCSC-CC--CT-TCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSC
T ss_pred             CCCcccee-c--cccCCCCCEEECcCCcCCe-ec--cc-cCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCC
Confidence            99999974 4  7889999999999999985 33  33 48999999999999997 56  8889999999999999998


Q ss_pred             cCCCccCCCcccCcccccCccccCCCCcccccccccCCCCceEEEeecCCCCccCCccccccccccceEEecCCcceecc
Q 045449          292 FIPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGILPKSIGNFSLSLETILMANCSISGNI  371 (823)
Q Consensus       292 ~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~  371 (823)
                      ..   ++.+++|+.|++++|+++                   .|++++|.+.+.+|  ++.+ ++|++|++++|.+.+.+
T Consensus       248 ~~---~~~l~~L~~L~l~~n~L~-------------------~L~l~~n~~~~~~~--~~~l-~~L~~L~Ls~n~~l~~l  302 (457)
T 3bz5_A          248 LD---VSTLSKLTTLHCIQTDLL-------------------EIDLTHNTQLIYFQ--AEGC-RKIKELDVTHNTQLYLL  302 (457)
T ss_dssp             CC---CTTCTTCCEEECTTCCCS-------------------CCCCTTCTTCCEEE--CTTC-TTCCCCCCTTCTTCCEE
T ss_pred             cC---HHHCCCCCEEeccCCCCC-------------------EEECCCCccCCccc--cccc-ccCCEEECCCCccccee
Confidence            64   456677888877766543                   45677777777766  3455 67888888888887777


Q ss_pred             CccccCcccccEEEcccCcCCCCchhcccccCCCCEEEccCCCCCCcchHhhhcCCCCCEEEcccCcCcccccccccCCC
Q 045449          372 PQVVGNLSNLLVLELGGNNLTGPIPVTFSQLQTLQAFDLTRNKLAGPITDELCHLARLHSLVLQGNKFSGSIPSCLGNLT  451 (823)
Q Consensus       372 p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~  451 (823)
                      |.   ..++|+.|++++|             ++|++|++++|+|++. +  ++++++|+.|++++|+|++        ++
T Consensus       303 ~~---~~~~L~~L~l~~~-------------~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~--------l~  355 (457)
T 3bz5_A          303 DC---QAAGITELDLSQN-------------PKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD--------FS  355 (457)
T ss_dssp             EC---TTCCCSCCCCTTC-------------TTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB--------CT
T ss_pred             cc---CCCcceEechhhc-------------ccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC--------cc
Confidence            74   3455666666555             6788888888888874 3  7888889999999998886        24


Q ss_pred             CCCeEeccCCccccccchhhhccCCCcEEeccccccccccCccccC
Q 045449          452 SVRVLYLGLNIFTSVLSSTIWNLKDILFIDVSSNFLDGPLSLDIGN  497 (823)
Q Consensus       452 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~  497 (823)
                      .|..|++++|.++|.     +.+..|..+|+++|+++|.+|..+..
T Consensus       356 ~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~~~~  396 (457)
T 3bz5_A          356 SVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPDLLD  396 (457)
T ss_dssp             TGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTTCBC
T ss_pred             ccccccccCCcEEec-----ceeeecCccccccCcEEEEcChhHhc
Confidence            567778888988886     35677888899999999999876543

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=1.5e-38  Score=361.91  Aligned_cols=322  Identities=27%  Similarity=0.412  Sum_probs=235.7

Q ss_pred             CcEEEEEcCCCCCccccCcccCCCCCCcEEEccCCCCCCCCCCCCCCCCCCCEEECCCCcCcCCCchhhhcCCCCcEEec
Q 045449           52 HRVIGLNISSFNLQGTITPQLGNLSSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQLFGSLSSFIFNMSSMTTIDL  131 (823)
Q Consensus        52 ~~v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  131 (823)
                      .+++.|||++|.+++..+  +.++++|++|+|++|++++..+  ++++++|++|+|++|.+++..+  +.++++|++|+|
T Consensus        68 ~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l  141 (466)
T 1o6v_A           68 NNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLEL  141 (466)
T ss_dssp             TTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEEE
T ss_pred             cCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCChH--HcCCCCCCEEEC
Confidence            478999999999997644  9999999999999999997655  9999999999999999987654  899999999999


Q ss_pred             ccccccCccCccccCCCCCCccccccceeeeccceeeccCccccccchhhHHHHHhhcCCCcccCCcccCCcchhhhhcc
Q 045449          132 SINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEIGNLTKLKEIISTITNSTVCEIPREIGNLPYLARLAL  211 (823)
Q Consensus       132 s~N~l~~~~p~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~~l~~n~~~~~ip~~l~~l~~L~~L~L  211 (823)
                      ++|++++ ++        .+..+++|++|+++ |.+.+.                           ..+.++++|++|++
T Consensus       142 ~~n~l~~-~~--------~~~~l~~L~~L~l~-~~~~~~---------------------------~~~~~l~~L~~L~l  184 (466)
T 1o6v_A          142 SSNTISD-IS--------ALSGLTSLQQLSFG-NQVTDL---------------------------KPLANLTTLERLDI  184 (466)
T ss_dssp             EEEEECC-CG--------GGTTCTTCSEEEEE-ESCCCC---------------------------GGGTTCTTCCEEEC
T ss_pred             CCCccCC-Ch--------hhccCCcccEeecC-CcccCc---------------------------hhhccCCCCCEEEC
Confidence            9999985 22        24889999999996 444321                           12566778999999


Q ss_pred             ccccccCCccccccCCCCCcEEEccCCcccccCCcccccCCCCccEEEeeccccccccCccccCCCCCCeEEeecccccc
Q 045449          212 ATNNLVGVVPVTIFNMSALKEISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSITNSSKLSDLELGENLFSG  291 (823)
Q Consensus       212 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~lp~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~  291 (823)
                      ++|++++.  ..+..+++|++|++++|.+++..|  +. .+++|++|++++|++++.  +.+..+++|++|++++|.+++
T Consensus       185 ~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~-~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~  257 (466)
T 1o6v_A          185 SSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LG-ILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISN  257 (466)
T ss_dssp             CSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GG-GCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCC
T ss_pred             cCCcCCCC--hhhccCCCCCEEEecCCccccccc--cc-ccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCcccc
Confidence            99999865  348899999999999999996555  33 489999999999999864  468899999999999999997


Q ss_pred             cCCCccCCCcccCcccccCccccCCCCcccccccccCCCCceEEEeecCCCCccCCccccccccccceEEecCCcceecc
Q 045449          292 FIPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGILPKSIGNFSLSLETILMANCSISGNI  371 (823)
Q Consensus       292 ~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~  371 (823)
                      ..+  +..+++|+.|++++|.+++..       .+..+++|+.|++++|.+++..|  +.                    
T Consensus       258 ~~~--~~~l~~L~~L~l~~n~l~~~~-------~~~~l~~L~~L~L~~n~l~~~~~--~~--------------------  306 (466)
T 1o6v_A          258 LAP--LSGLTKLTELKLGANQISNIS-------PLAGLTALTNLELNENQLEDISP--IS--------------------  306 (466)
T ss_dssp             CGG--GTTCTTCSEEECCSSCCCCCG-------GGTTCTTCSEEECCSSCCSCCGG--GG--------------------
T ss_pred             chh--hhcCCCCCEEECCCCccCccc-------cccCCCccCeEEcCCCcccCchh--hc--------------------
Confidence            765  788888888888888887752       25667777777777777665433  33                    


Q ss_pred             CccccCcccccEEEcccCcCCCCchhcccccCCCCEEEccCCCCCCcchHhhhcCCCCCEEEcccCcCcccccccccCCC
Q 045449          372 PQVVGNLSNLLVLELGGNNLTGPIPVTFSQLQTLQAFDLTRNKLAGPITDELCHLARLHSLVLQGNKFSGSIPSCLGNLT  451 (823)
Q Consensus       372 p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~  451 (823)
                           .+++|+.|+|++|++++..|  +..+++|++|++++|++++.  ..+..+++|+.|++++|++++..|  +..++
T Consensus       307 -----~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~  375 (466)
T 1o6v_A          307 -----NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLT  375 (466)
T ss_dssp             -----GCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCT
T ss_pred             -----CCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCC
Confidence                 44444455555555444333  34445555555555555443  234445555555555555554444  44555


Q ss_pred             CCCeEeccCCcccc
Q 045449          452 SVRVLYLGLNIFTS  465 (823)
Q Consensus       452 ~L~~L~Ls~N~l~~  465 (823)
                      +|+.|++++|.+++
T Consensus       376 ~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          376 RITQLGLNDQAWTN  389 (466)
T ss_dssp             TCCEEECCCEEEEC
T ss_pred             CCCEEeccCCcccC
Confidence            55555555555554

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=3.8e-38  Score=369.63  Aligned_cols=174  Identities=18%  Similarity=0.211  Sum_probs=127.8

Q ss_pred             ccceEEecCCcceeccCccccCcccccEEEcccCcCCCCchhcccccCCCCEEEccCCCCCCcchHhhhcCCCCCEEEcc
Q 045449          356 SLETILMANCSISGNIPQVVGNLSNLLVLELGGNNLTGPIPVTFSQLQTLQAFDLTRNKLAGPITDELCHLARLHSLVLQ  435 (823)
Q Consensus       356 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls  435 (823)
                      +|++|++++|.++...+..   .++|+.|+|++|++++  +..+..+++|++|+|++|.+++.+|..|..+++|+.|+|+
T Consensus       212 ~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls  286 (597)
T 3oja_B          212 AVEELDASHNSINVVRGPV---NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYIS  286 (597)
T ss_dssp             TCSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECT
T ss_pred             hhheeeccCCccccccccc---CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECC
Confidence            3444445555444332222   2467788888888875  3567788888888888888888888888888888888888


Q ss_pred             cCcCcccccccccCCCCCCeEeccCCccccccchhhhccCCCcEEeccccccccccCccccCCCCCcEEEcccCCCCCCC
Q 045449          436 GNKFSGSIPSCLGNLTSVRVLYLGLNIFTSVLSSTIWNLKDILFIDVSSNFLDGPLSLDIGNLKVVIGLDFSRNNLSGDI  515 (823)
Q Consensus       436 ~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~i  515 (823)
                      +|.+++ +|..+..+++|+.|+|++|.+++ +|..+..+++|+.|+|++|.+++. |  +..++.|+.|++++|+++|..
T Consensus       287 ~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~~-i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~~~  361 (597)
T 3oja_B          287 NNRLVA-LNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNS  361 (597)
T ss_dssp             TSCCCE-EECSSSCCTTCCEEECCSSCCCC-CGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHH
T ss_pred             CCCCCC-CCcccccCCCCcEEECCCCCCCc-cCcccccCCCCCEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCCCChh
Confidence            888885 57777778889999999998885 677788889999999999998765 2  677889999999999988543


Q ss_pred             CCcccCccCCCCCCCCCCCcccccCCcccCCCCC
Q 045449          516 PITIGEGEIPRGGPFANLTAKSFMGNELLCGLPD  549 (823)
Q Consensus       516 p~~~~~g~ip~~~~~~~~~~~~~~~n~~~c~~~~  549 (823)
                      +..+          +..+....+.++...|+.+.
T Consensus       362 ~~~~----------~~~~~~~~~~~~~~~C~~~~  385 (597)
T 3oja_B          362 LRAL----------FRNVARPAVDDADQHCKIDY  385 (597)
T ss_dssp             HHHH----------TTTCCTTTBCCCCCCCCTTC
T ss_pred             HHHH----------HHHHhhhccccccccCCcch
Confidence            2221          33444456778888888654

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=5.1e-38  Score=358.90  Aligned_cols=329  Identities=20%  Similarity=0.165  Sum_probs=278.2

Q ss_pred             hhhhhccccccccCCccccccCCCCCcEEEccCCcccccCCcccccCCCCccEEEeeccccccccCccccCCCCCCeEEe
Q 045449          205 YLARLALATNNLVGVVPVTIFNMSALKEISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSITNSSKLSDLEL  284 (823)
Q Consensus       205 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~lp~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  284 (823)
                      +++.|+|++|++++..|..|.++++|++|+|++|.+++..|..+. .+++|++|+|++|++++..+..|.++++|++|+|
T Consensus        33 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  111 (477)
T 2id5_A           33 ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFN-NLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI  111 (477)
T ss_dssp             TCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTT-TCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEEC
T ss_pred             CCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhh-CCccCCEEECCCCcCCccCcccccCCCCCCEEEC
Confidence            577889999999888888888999999999999998866566555 4889999999999998766677888999999999


Q ss_pred             ecccccccCCCccCCCcccCcccccCccccCCCCcccccccccCCCCceEEEeecCCCCccCCccccccccccceEEecC
Q 045449          285 GENLFSGFIPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGILPKSIGNFSLSLETILMAN  364 (823)
Q Consensus       285 s~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~  364 (823)
                      ++|++++..|..|..+++|++|+|++|.+++.     .+..|.++++|+.|++++|.+++..+..+..+ ++|++|++++
T Consensus       112 s~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~-----~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l-~~L~~L~l~~  185 (477)
T 2id5_A          112 SENKIVILLDYMFQDLYNLKSLEVGDNDLVYI-----SHRAFSGLNSLEQLTLEKCNLTSIPTEALSHL-HGLIVLRLRH  185 (477)
T ss_dssp             TTSCCCEECTTTTTTCTTCCEEEECCTTCCEE-----CTTSSTTCTTCCEEEEESCCCSSCCHHHHTTC-TTCCEEEEES
T ss_pred             CCCccccCChhHccccccCCEEECCCCcccee-----ChhhccCCCCCCEEECCCCcCcccChhHhccc-CCCcEEeCCC
Confidence            99999988888899999999999999988876     34578888999999999999988777778888 7899999999


Q ss_pred             CcceeccCccccCcccccEEEcccCcCCCCchhcccccCCCCEEEccCCCCCCcchHhhhcCCCCCEEEcccCcCccccc
Q 045449          365 CSISGNIPQVVGNLSNLLVLELGGNNLTGPIPVTFSQLQTLQAFDLTRNKLAGPITDELCHLARLHSLVLQGNKFSGSIP  444 (823)
Q Consensus       365 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p  444 (823)
                      |.+++..+..|..+++|+.|++++|.+.+.+|..+....+|++|+|++|++++..+..|..+++|+.|+|++|.+++..+
T Consensus       186 n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~  265 (477)
T 2id5_A          186 LNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEG  265 (477)
T ss_dssp             CCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECT
T ss_pred             CcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccCh
Confidence            99998888899999999999999999888888877777799999999999997766788999999999999999998888


Q ss_pred             ccccCCCCCCeEeccCCccccccchhhhccCCCcEEeccccccccccCccccCCCCCcEEEcccCCCCCCCCCcccCccC
Q 045449          445 SCLGNLTSVRVLYLGLNIFTSVLSSTIWNLKDILFIDVSSNFLDGPLSLDIGNLKVVIGLDFSRNNLSGDIPITIGEGEI  524 (823)
Q Consensus       445 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~ip~~~~~g~i  524 (823)
                      ..|..+++|+.|+|++|++++..|..+..+++|+.|||++|.+++..+..+..++.|+.|++++|++++..+...-    
T Consensus       266 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~----  341 (477)
T 2id5_A          266 SMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWV----  341 (477)
T ss_dssp             TSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHHH----
T ss_pred             hhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchHhH----
Confidence            8899999999999999999999999999999999999999999987777889999999999999999876543211    


Q ss_pred             CCCCCCCCCCcccccCCcccCCCCC
Q 045449          525 PRGGPFANLTAKSFMGNELLCGLPD  549 (823)
Q Consensus       525 p~~~~~~~~~~~~~~~n~~~c~~~~  549 (823)
                           +.......+.++...|..|.
T Consensus       342 -----~~~~~~~~~~~~~~~C~~p~  361 (477)
T 2id5_A          342 -----FRRRWRLNFNRQQPTCATPE  361 (477)
T ss_dssp             -----HTTTTSSCCTTCCCBEEESG
T ss_pred             -----HhhhhccccCccCceeCCch
Confidence                 11112234556666776554

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=2.1e-37  Score=344.29  Aligned_cols=173  Identities=17%  Similarity=0.207  Sum_probs=121.6

Q ss_pred             ccceEEecCCcceeccCccccCcccccEEEcccCcCCCCchhcccccCCCCEEEccCCCCCCcchHhhhcCCCCCEEEcc
Q 045449          356 SLETILMANCSISGNIPQVVGNLSNLLVLELGGNNLTGPIPVTFSQLQTLQAFDLTRNKLAGPITDELCHLARLHSLVLQ  435 (823)
Q Consensus       356 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls  435 (823)
                      +|++|++++|.++.....   ..++|+.|++++|++++.  ..+..+++|++|+|++|.+++..|..|..+++|+.|+|+
T Consensus       206 ~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  280 (390)
T 3o6n_A          206 AVEELDASHNSINVVRGP---VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYIS  280 (390)
T ss_dssp             SCSEEECCSSCCCEEECC---CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECC
T ss_pred             cceEEECCCCeeeecccc---ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECC
Confidence            344455555554433221   135677778888877753  467778888888888888887778888888888888888


Q ss_pred             cCcCcccccccccCCCCCCeEeccCCccccccchhhhccCCCcEEeccccccccccCccccCCCCCcEEEcccCCCCCCC
Q 045449          436 GNKFSGSIPSCLGNLTSVRVLYLGLNIFTSVLSSTIWNLKDILFIDVSSNFLDGPLSLDIGNLKVVIGLDFSRNNLSGDI  515 (823)
Q Consensus       436 ~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~i  515 (823)
                      +|++++ +|..+..+++|+.|+|++|++++ +|..+..+++|+.|++++|.++.. |  +..++.|+.|++++|++++.-
T Consensus       281 ~n~l~~-~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~~  355 (390)
T 3o6n_A          281 NNRLVA-LNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNS  355 (390)
T ss_dssp             SSCCCE-EECSSSCCTTCCEEECCSSCCCC-CGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHH
T ss_pred             CCcCcc-cCcccCCCCCCCEEECCCCccee-cCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccchh
Confidence            888875 56666778888888888888885 566778888899999999988754 3  677888999999999888532


Q ss_pred             CCcccCccCCCCCCCCCCCcccccCCcccCCCC
Q 045449          516 PITIGEGEIPRGGPFANLTAKSFMGNELLCGLP  548 (823)
Q Consensus       516 p~~~~~g~ip~~~~~~~~~~~~~~~n~~~c~~~  548 (823)
                      ...+          +..+....+.+++..|..+
T Consensus       356 ~~~~----------~~~~~~~~~~~~~~~c~~~  378 (390)
T 3o6n_A          356 LRAL----------FRNVARPAVDDADQHCKID  378 (390)
T ss_dssp             HHHH----------TTTCCTTTBCCCCSCCCTT
T ss_pred             HHHH----------HHHHHhhcccccCceeccc
Confidence            2111          2233334456666667654

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=3.7e-37  Score=351.82  Aligned_cols=316  Identities=20%  Similarity=0.204  Sum_probs=231.2

Q ss_pred             CCCCCccccCcccCCCCCCcEEEccCCCCCCCCCCCCCCCCCCCEEECCCCcCcCCCchhhhcCCCCcEEecccccccCc
Q 045449           60 SSFNLQGTITPQLGNLSSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQLFGSLSSFIFNMSSMTTIDLSINRLSGE  139 (823)
Q Consensus        60 ~~~~l~g~~~~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~  139 (823)
                      ++++++ .+|..+.  +++++|||++|+|++..|..|.++++|++|+|++|.|++..|.+|.++++|++|+|++|++++.
T Consensus        19 ~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~   95 (477)
T 2id5_A           19 HRKRFV-AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLI   95 (477)
T ss_dssp             CSCCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSC
T ss_pred             CCCCcC-cCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCcc
Confidence            344454 4555543  5899999999999988899999999999999999999998899999999999999999999843


Q ss_pred             cCccccCCCCCCccccccceeeeccceeeccCccccccchhhHHHHHhhcCCCcccCCcccCCcchhhhhccccccccCC
Q 045449          140 LPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEIGNLTKLKEIISTITNSTVCEIPREIGNLPYLARLALATNNLVGV  219 (823)
Q Consensus       140 ~p~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~~l~~n~~~~~ip~~l~~l~~L~~L~Ls~N~l~~~  219 (823)
                      .+..       |.++++|++|+|++|++++..|.                         .|.++++|++|+|++|++++.
T Consensus        96 ~~~~-------~~~l~~L~~L~Ls~n~i~~~~~~-------------------------~~~~l~~L~~L~l~~n~l~~~  143 (477)
T 2id5_A           96 PLGV-------FTGLSNLTKLDISENKIVILLDY-------------------------MFQDLYNLKSLEVGDNDLVYI  143 (477)
T ss_dssp             CTTS-------STTCTTCCEEECTTSCCCEECTT-------------------------TTTTCTTCCEEEECCTTCCEE
T ss_pred             Cccc-------ccCCCCCCEEECCCCccccCChh-------------------------HccccccCCEEECCCCcccee
Confidence            3222       48899999999999998865443                         345556778888888988888


Q ss_pred             ccccccCCCCCcEEEccCCcccccCCcccccCCCCccEEEeeccccccccCccccCCCCCCeEEeecccccccCCCccCC
Q 045449          220 VPVTIFNMSALKEISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSITNSSKLSDLELGENLFSGFIPNTIGN  299 (823)
Q Consensus       220 ~p~~~~~l~~L~~L~Ls~N~l~g~lp~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~  299 (823)
                      .|..|.++++|++|+|++|.++ .+|...+..+++|+.|+|++|.+.+..+..|..+++|+.|++++|.+.+.+|..+..
T Consensus       144 ~~~~~~~l~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~  222 (477)
T 2id5_A          144 SHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLY  222 (477)
T ss_dssp             CTTSSTTCTTCCEEEEESCCCS-SCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTT
T ss_pred             ChhhccCCCCCCEEECCCCcCc-ccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCccccc
Confidence            8888888889999999999888 555554555888888888888888887788888888888888888877777766666


Q ss_pred             CcccCcccccCccccCCCCcccccccccCCCCceEEEeecCCCCccCCccccccccccceEEecCCcceeccCccccCcc
Q 045449          300 LRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGILPKSIGNFSLSLETILMANCSISGNIPQVVGNLS  379 (823)
Q Consensus       300 l~~L~~L~L~~N~l~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~  379 (823)
                      ..+|+.|+|++|.++..     ....+.++++|+.|+|++|.+++..+..|..+ .+|++|+|++|++++..|..|.+++
T Consensus       223 ~~~L~~L~l~~n~l~~~-----~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~  296 (477)
T 2id5_A          223 GLNLTSLSITHCNLTAV-----PYLAVRHLVYLRFLNLSYNPISTIEGSMLHEL-LRLQEIQLVGGQLAVVEPYAFRGLN  296 (477)
T ss_dssp             TCCCSEEEEESSCCCSC-----CHHHHTTCTTCCEEECCSSCCCEECTTSCTTC-TTCCEEECCSSCCSEECTTTBTTCT
T ss_pred             CccccEEECcCCccccc-----CHHHhcCccccCeeECCCCcCCccChhhcccc-ccCCEEECCCCccceECHHHhcCcc
Confidence            66777777777776654     12345566666666666666665555555555 4555555555555555555555555


Q ss_pred             cccEEEcccCcCCCCchhcccccCCCCEEEccCCCCCC
Q 045449          380 NLLVLELGGNNLTGPIPVTFSQLQTLQAFDLTRNKLAG  417 (823)
Q Consensus       380 ~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~  417 (823)
                      +|++|+|++|++++..+..|..+++|++|+|++|.++.
T Consensus       297 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c  334 (477)
T 2id5_A          297 YLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLAC  334 (477)
T ss_dssp             TCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEEC
T ss_pred             cCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccC
Confidence            55555555555555444455555555555555555543

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=100.00  E-value=4.8e-37  Score=332.30  Aligned_cols=279  Identities=18%  Similarity=0.252  Sum_probs=193.0

Q ss_pred             ccchHHHHHHHHHHHHhccCCCcccccccc----CCCCCCccceeeeeCC--------CCCcEEEEEcCCCCCccccCcc
Q 045449            4 KSIISQHQQALLALKAHISYDHTNLFARNW----TSSTSVCIWIGITCDV--------NSHRVIGLNISSFNLQGTITPQ   71 (823)
Q Consensus         4 ~~~~~~~~~aLl~~k~~~~~~~~~~~~~~W----~~~~~~c~w~gv~c~~--------~~~~v~~L~L~~~~l~g~~~~~   71 (823)
                      +..+++|++||++||+++..|+.+... +|    ....++|.|.|+.|+.        ...+|+.|+|++|+++ .+|+.
T Consensus        22 ~~~~~~~~~aLl~~k~~~~~~~~~~~~-~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~~   99 (328)
T 4fcg_A           22 STALRPYHDVLSQWQRHYNADRNRWHS-AWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQ   99 (328)
T ss_dssp             -CCCCCHHHHHHHHHHHHHHCCTTHHH-HHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCSC
T ss_pred             cccCchHHHHHHHHHHhccCCchhhhh-hhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcChh
Confidence            346778999999999998778877776 89    4567899999999952        3457888888888887 67777


Q ss_pred             cCCCCCCcEEEccCCCCCCCCCCCCCCCCCCCEEECCCCcCcCCCchhhhcCCCCcEEecccccccCccCccccC--CCC
Q 045449           72 LGNLSSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQLFGSLSSFIFNMSSMTTIDLSINRLSGELPANICK--IPS  149 (823)
Q Consensus        72 l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~--~p~  149 (823)
                      ++++++|++|+|++|.|+ .+|..|+.+++|++|+|++|.|+ .+|..|+++++|++|+|++|++.+.+|..+..  ++.
T Consensus       100 l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~  177 (328)
T 4fcg_A          100 AFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASG  177 (328)
T ss_dssp             GGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CC
T ss_pred             hhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchh
Confidence            888888888888888888 78888888888888888888887 66777888888888888888777777765521  233


Q ss_pred             CCccccccceeeeccceeeccCccccccchhhHHHHHhhcCCCcccCCcccCCcchhhhhccccccccCCccccccCCCC
Q 045449          150 TLSKCKQLEELNLGFNNLSGAIPKEIGNLTKLKEIISTITNSTVCEIPREIGNLPYLARLALATNNLVGVVPVTIFNMSA  229 (823)
Q Consensus       150 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~~l~~n~~~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  229 (823)
                      .|.++++|++|+|++|+++ .+|..+                         +++++|++|+|++|++++ +|..+.++++
T Consensus       178 ~~~~l~~L~~L~L~~n~l~-~lp~~l-------------------------~~l~~L~~L~L~~N~l~~-l~~~l~~l~~  230 (328)
T 4fcg_A          178 EHQGLVNLQSLRLEWTGIR-SLPASI-------------------------ANLQNLKSLKIRNSPLSA-LGPAIHHLPK  230 (328)
T ss_dssp             CEEESTTCCEEEEEEECCC-CCCGGG-------------------------GGCTTCCEEEEESSCCCC-CCGGGGGCTT
T ss_pred             hhccCCCCCEEECcCCCcC-cchHhh-------------------------cCCCCCCEEEccCCCCCc-CchhhccCCC
Confidence            3445667777777777665 444333                         233445556666666664 3445666666


Q ss_pred             CcEEEccCCcccccCCcccccCCCCccEEEeeccccccccCccccCCCCCCeEEeecccccccCCCccCCCcccCccccc
Q 045449          230 LKEISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSITNSSKLSDLELGENLFSGFIPNTIGNLRNLEFGNIA  309 (823)
Q Consensus       230 L~~L~Ls~N~l~g~lp~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~  309 (823)
                      |++|+|++|.+.+.+|..+.. +++|++|+|++|++.+.+|..+.++++|++|+|++|++.+.+|..++++++|+.+++.
T Consensus       231 L~~L~Ls~n~~~~~~p~~~~~-l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~  309 (328)
T 4fcg_A          231 LEELDLRGCTALRNYPPIFGG-RAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVP  309 (328)
T ss_dssp             CCEEECTTCTTCCBCCCCTTC-CCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECC
T ss_pred             CCEEECcCCcchhhhHHHhcC-CCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCC
Confidence            666666666666666655443 6666666666666666666666666666666666666666666666666666666655


Q ss_pred             Ccccc
Q 045449          310 DNYLT  314 (823)
Q Consensus       310 ~N~l~  314 (823)
                      .|.+.
T Consensus       310 ~~~~~  314 (328)
T 4fcg_A          310 PHLQA  314 (328)
T ss_dssp             GGGSC
T ss_pred             HHHHH
Confidence            55444

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=1e-35  Score=319.87  Aligned_cols=257  Identities=28%  Similarity=0.461  Sum_probs=199.1

Q ss_pred             CCccEEEeecccccc--ccCccccCCCCCCeEEeec-ccccccCCCccCCCcccCcccccCccccCCCCcccccccccCC
Q 045449          253 PNVETLNLGINSFSG--TIPSSITNSSKLSDLELGE-NLFSGFIPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNC  329 (823)
Q Consensus       253 ~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~l  329 (823)
                      .+++.|+|++|++++  .+|..+.++++|++|+|++ |.+.+.+|..|+++                             
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l-----------------------------  100 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKL-----------------------------  100 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGC-----------------------------
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcC-----------------------------
Confidence            467777777777777  6777777777777777774 77766666555444                             


Q ss_pred             CCceEEEeecCCCCccCCccccccccccceEEecCCcceeccCccccCcccccEEEcccCcCCCCchhcccccC-CCCEE
Q 045449          330 KKLKVLIVTGNPLDGILPKSIGNFSLSLETILMANCSISGNIPQVVGNLSNLLVLELGGNNLTGPIPVTFSQLQ-TLQAF  408 (823)
Q Consensus       330 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~-~L~~L  408 (823)
                      ++|++|+|++|.+++.+|..+..+ ++|++|++++|.+++.+|..+..+++|++|+|++|+++|.+|..+..++ +|++|
T Consensus       101 ~~L~~L~Ls~n~l~~~~p~~~~~l-~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L  179 (313)
T 1ogq_A          101 TQLHYLYITHTNVSGAIPDFLSQI-KTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSM  179 (313)
T ss_dssp             TTCSEEEEEEECCEEECCGGGGGC-TTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEE
T ss_pred             CCCCEEECcCCeeCCcCCHHHhCC-CCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEE
Confidence            455555555666655666666666 5777777777777777777777788888888888888877888887777 78888


Q ss_pred             EccCCCCCCcchHhhhcCCCCCEEEcccCcCcccccccccCCCCCCeEeccCCccccccchhhhccCCCcEEeccccccc
Q 045449          409 DLTRNKLAGPITDELCHLARLHSLVLQGNKFSGSIPSCLGNLTSVRVLYLGLNIFTSVLSSTIWNLKDILFIDVSSNFLD  488 (823)
Q Consensus       409 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~  488 (823)
                      +|++|++++.+|..+..++ |+.|+|++|.+++.+|..|..+++|+.|+|++|.+++.+|. +..+++|++|+|++|.++
T Consensus       180 ~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~  257 (313)
T 1ogq_A          180 TISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIY  257 (313)
T ss_dssp             ECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCE
T ss_pred             ECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCccc
Confidence            8888888888888888876 88888888888888888888888888888888888877666 777888899999999998


Q ss_pred             cccCccccCCCCCcEEEcccCCCCCCCCCcccCccCCCCCCCCCCCcccccCCcccCCCCCC
Q 045449          489 GPLSLDIGNLKVVIGLDFSRNNLSGDIPITIGEGEIPRGGPFANLTAKSFMGNELLCGLPDL  550 (823)
Q Consensus       489 g~~p~~~~~l~~L~~L~ls~N~l~g~ip~~~~~g~ip~~~~~~~~~~~~~~~n~~~c~~~~~  550 (823)
                      |.+|..+..++.|+.|++++|+++|.+|         ....+..+....+.+|+++||.|..
T Consensus       258 ~~~p~~l~~l~~L~~L~Ls~N~l~~~ip---------~~~~l~~L~~l~l~~N~~lc~~p~~  310 (313)
T 1ogq_A          258 GTLPQGLTQLKFLHSLNVSFNNLCGEIP---------QGGNLQRFDVSAYANNKCLCGSPLP  310 (313)
T ss_dssp             ECCCGGGGGCTTCCEEECCSSEEEEECC---------CSTTGGGSCGGGTCSSSEEESTTSS
T ss_pred             CcCChHHhcCcCCCEEECcCCcccccCC---------CCccccccChHHhcCCCCccCCCCC
Confidence            8888888889999999999999885444         4445677888899999999998754

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=9e-34  Score=309.71  Aligned_cols=306  Identities=22%  Similarity=0.345  Sum_probs=255.0

Q ss_pred             ccccccceeeeccceeeccCccccccchhhHHHHHhhcCCCcccCCcccCCcchhhhhccccccccCCccccccCCCCCc
Q 045449          152 SKCKQLEELNLGFNNLSGAIPKEIGNLTKLKEIISTITNSTVCEIPREIGNLPYLARLALATNNLVGVVPVTIFNMSALK  231 (823)
Q Consensus       152 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~~l~~n~~~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~  231 (823)
                      ..+++|++|++++|.++. +|                          .+..+++|++|++++|++++..+  +.++++|+
T Consensus        41 ~~l~~L~~L~l~~~~i~~-~~--------------------------~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~   91 (347)
T 4fmz_A           41 EELESITKLVVAGEKVAS-IQ--------------------------GIEYLTNLEYLNLNGNQITDISP--LSNLVKLT   91 (347)
T ss_dssp             HHHTTCSEEECCSSCCCC-CT--------------------------TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCC
T ss_pred             hhcccccEEEEeCCcccc-ch--------------------------hhhhcCCccEEEccCCccccchh--hhcCCcCC
Confidence            567889999999988762 22                          13445678889999999986544  88899999


Q ss_pred             EEEccCCcccccCCcccccCCCCccEEEeeccccccccCccccCCCCCCeEEeecccccccCCCccCCCcccCcccccCc
Q 045449          232 EISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSITNSSKLSDLELGENLFSGFIPNTIGNLRNLEFGNIADN  311 (823)
Q Consensus       232 ~L~Ls~N~l~g~lp~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N  311 (823)
                      +|++++|.++ .+| .+ ..+++|++|++++|++++..+  +..+++|++|++++|.....++ .+..+++|++|++++|
T Consensus        92 ~L~L~~n~i~-~~~-~~-~~l~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~  165 (347)
T 4fmz_A           92 NLYIGTNKIT-DIS-AL-QNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTES  165 (347)
T ss_dssp             EEECCSSCCC-CCG-GG-TTCTTCSEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSS
T ss_pred             EEEccCCccc-Cch-HH-cCCCcCCEEECcCCcccCchh--hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCC
Confidence            9999999988 455 33 358999999999999986433  8889999999999996665544 4889999999999999


Q ss_pred             cccCCCCcccccccccCCCCceEEEeecCCCCccCCccccccccccceEEecCCcceeccCccccCcccccEEEcccCcC
Q 045449          312 YLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGILPKSIGNFSLSLETILMANCSISGNIPQVVGNLSNLLVLELGGNNL  391 (823)
Q Consensus       312 ~l~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l  391 (823)
                      .+++..       .+..+++|+.|++++|.+.+..+  +..+ .+|++|++++|.+++..+  +..+++|++|++++|++
T Consensus       166 ~~~~~~-------~~~~l~~L~~L~l~~n~l~~~~~--~~~l-~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l  233 (347)
T 4fmz_A          166 KVKDVT-------PIANLTDLYSLSLNYNQIEDISP--LASL-TSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKI  233 (347)
T ss_dssp             CCCCCG-------GGGGCTTCSEEECTTSCCCCCGG--GGGC-TTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCC
T ss_pred             CcCCch-------hhccCCCCCEEEccCCccccccc--ccCC-CccceeecccCCCCCCch--hhcCCcCCEEEccCCcc
Confidence            988762       27888999999999999986544  6666 789999999999987655  88899999999999999


Q ss_pred             CCCchhcccccCCCCEEEccCCCCCCcchHhhhcCCCCCEEEcccCcCcccccccccCCCCCCeEeccCCccccccchhh
Q 045449          392 TGPIPVTFSQLQTLQAFDLTRNKLAGPITDELCHLARLHSLVLQGNKFSGSIPSCLGNLTSVRVLYLGLNIFTSVLSSTI  471 (823)
Q Consensus       392 ~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~  471 (823)
                      ++..+  +..+++|++|++++|.+++.  ..+..+++|+.|++++|.+++.  ..+..+++|+.|++++|.+++..|..+
T Consensus       234 ~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l  307 (347)
T 4fmz_A          234 TDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVI  307 (347)
T ss_dssp             CCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHH
T ss_pred             CCCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHh
Confidence            86544  88999999999999999864  4688899999999999999865  468899999999999999999999999


Q ss_pred             hccCCCcEEeccccccccccCccccCCCCCcEEEcccCCCC
Q 045449          472 WNLKDILFIDVSSNFLDGPLSLDIGNLKVVIGLDFSRNNLS  512 (823)
Q Consensus       472 ~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~ls~N~l~  512 (823)
                      ..+++|+.|++++|.+++..|  +..++.|+.||+++|+++
T Consensus       308 ~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          308 GGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             HTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred             hccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence            999999999999999998777  888999999999999876

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=1.5e-33  Score=308.00  Aligned_cols=307  Identities=24%  Similarity=0.374  Sum_probs=160.6

Q ss_pred             cCCCCCCcEEEccCCCCCCCCCCCCCCCCCCCEEECCCCcCcCCCchhhhcCCCCcEEecccccccCccCccccCCCCCC
Q 045449           72 LGNLSSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQLFGSLSSFIFNMSSMTTIDLSINRLSGELPANICKIPSTL  151 (823)
Q Consensus        72 l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~p~~~  151 (823)
                      +..+++|++|++++|.+.. +| .+..+++|++|+|++|.+++..+  +..+++|++|+|++|+++. +|        .+
T Consensus        40 ~~~l~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~-~~--------~~  106 (347)
T 4fmz_A           40 QEELESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITD-IS--------AL  106 (347)
T ss_dssp             HHHHTTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CG--------GG
T ss_pred             chhcccccEEEEeCCcccc-ch-hhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccC-ch--------HH
Confidence            3456778888888888763 44 37778888888888888775443  7777778888887777763 22        23


Q ss_pred             ccccccceeeeccceeeccCccccccchhhHHHHHhhcCCCcccCCcccCCcchhhhhccccccccCCccccccCCCCCc
Q 045449          152 SKCKQLEELNLGFNNLSGAIPKEIGNLTKLKEIISTITNSTVCEIPREIGNLPYLARLALATNNLVGVVPVTIFNMSALK  231 (823)
Q Consensus       152 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~~l~~n~~~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~  231 (823)
                      ..+++|++|+|++|++++. +.                          +..+++|++|++++|.....++. +..+++|+
T Consensus       107 ~~l~~L~~L~l~~n~i~~~-~~--------------------------~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~  158 (347)
T 4fmz_A          107 QNLTNLRELYLNEDNISDI-SP--------------------------LANLTKMYSLNLGANHNLSDLSP-LSNMTGLN  158 (347)
T ss_dssp             TTCTTCSEEECTTSCCCCC-GG--------------------------GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCC
T ss_pred             cCCCcCCEEECcCCcccCc-hh--------------------------hccCCceeEEECCCCCCcccccc-hhhCCCCc
Confidence            6677777777777776521 11                          22334445555555543332222 44455555


Q ss_pred             EEEccCCcccccCCcccccCCCCccEEEeeccccccccCccccCCCCCCeEEeecccccccCCCccCCCcccCcccccCc
Q 045449          232 EISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSITNSSKLSDLELGENLFSGFIPNTIGNLRNLEFGNIADN  311 (823)
Q Consensus       232 ~L~Ls~N~l~g~lp~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N  311 (823)
                      +|++++|.++                         +..+  +..+++|++|++++|.+++..+  +..+++|+.|++++|
T Consensus       159 ~L~l~~~~~~-------------------------~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n  209 (347)
T 4fmz_A          159 YLTVTESKVK-------------------------DVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVN  209 (347)
T ss_dssp             EEECCSSCCC-------------------------CCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSS
T ss_pred             EEEecCCCcC-------------------------Cchh--hccCCCCCEEEccCCccccccc--ccCCCccceeecccC
Confidence            5555555544                         2211  3334444444444444433221  333334444444444


Q ss_pred             cccCCCCcccccccccCCCCceEEEeecCCCCccCCccccccccccceEEecCCcceeccCccccCcccccEEEcccCcC
Q 045449          312 YLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGILPKSIGNFSLSLETILMANCSISGNIPQVVGNLSNLLVLELGGNNL  391 (823)
Q Consensus       312 ~l~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l  391 (823)
                      .+++..       .+..+++|+.|++++|.+++                         ..+  +..+++|++|++++|++
T Consensus       210 ~l~~~~-------~~~~~~~L~~L~l~~n~l~~-------------------------~~~--~~~l~~L~~L~l~~n~l  255 (347)
T 4fmz_A          210 QITDIT-------PVANMTRLNSLKIGNNKITD-------------------------LSP--LANLSQLTWLEIGTNQI  255 (347)
T ss_dssp             CCCCCG-------GGGGCTTCCEEECCSSCCCC-------------------------CGG--GTTCTTCCEEECCSSCC
T ss_pred             CCCCCc-------hhhcCCcCCEEEccCCccCC-------------------------Ccc--hhcCCCCCEEECCCCcc
Confidence            333321       13333333444444443332                         211  34444555555555555


Q ss_pred             CCCchhcccccCCCCEEEccCCCCCCcchHhhhcCCCCCEEEcccCcCcccccccccCCCCCCeEeccCCccccccchhh
Q 045449          392 TGPIPVTFSQLQTLQAFDLTRNKLAGPITDELCHLARLHSLVLQGNKFSGSIPSCLGNLTSVRVLYLGLNIFTSVLSSTI  471 (823)
Q Consensus       392 ~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~  471 (823)
                      ++.  ..+..+++|++|++++|++++.  ..+..+++|+.|++++|.+++..|..++.+++|+.|+|++|++++..|  +
T Consensus       256 ~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~  329 (347)
T 4fmz_A          256 SDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--L  329 (347)
T ss_dssp             CCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--G
T ss_pred             CCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--h
Confidence            432  2345555555555555555543  234555555555555555555555555555566666666666555444  5


Q ss_pred             hccCCCcEEeccccccc
Q 045449          472 WNLKDILFIDVSSNFLD  488 (823)
Q Consensus       472 ~~l~~L~~LdLs~N~l~  488 (823)
                      ..+++|+.||+++|.++
T Consensus       330 ~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          330 ASLSKMDSADFANQVIK  346 (347)
T ss_dssp             GGCTTCSEESSSCC---
T ss_pred             hhhhccceeehhhhccc
Confidence            55666666666666553

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=1.1e-33  Score=314.39  Aligned_cols=311  Identities=15%  Similarity=0.108  Sum_probs=266.1

Q ss_pred             cchhhhhccccccccCCccccccCCCCCcEEEccCCcccccCCcccccCCCCccEEEeeccccccccCccccCCCCCCeE
Q 045449          203 LPYLARLALATNNLVGVVPVTIFNMSALKEISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSITNSSKLSDL  282 (823)
Q Consensus       203 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~lp~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  282 (823)
                      ++++++|++++|.++...+..|.++++|++|+|++|.+++..+..+ ..+++|++|+|++|++++..|..|.++++|++|
T Consensus        44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  122 (390)
T 3o6n_A           44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAF-AYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL  122 (390)
T ss_dssp             GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTT-TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhc-cCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence            4567889999999987766678889999999999999985444444 459999999999999998888889999999999


Q ss_pred             EeecccccccCCCccCCCcccCcccccCccccCCCCcccccccccCCCCceEEEeecCCCCccCCccccccccccceEEe
Q 045449          283 ELGENLFSGFIPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGILPKSIGNFSLSLETILM  362 (823)
Q Consensus       283 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L  362 (823)
                      +|++|+++...+..|..+++|++|++++|.+++.     .+..+..+++|+.|++++|.+++..   +..+ ++|++|++
T Consensus       123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~-----~~~~~~~l~~L~~L~l~~n~l~~~~---~~~l-~~L~~L~l  193 (390)
T 3o6n_A          123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERI-----EDDTFQATTSLQNLQLSSNRLTHVD---LSLI-PSLFHANV  193 (390)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBC-----CTTTTSSCTTCCEEECCSSCCSBCC---GGGC-TTCSEEEC
T ss_pred             ECCCCccCcCCHHHhcCCCCCcEEECCCCccCcc-----ChhhccCCCCCCEEECCCCcCCccc---cccc-cccceeec
Confidence            9999999977667789999999999999999887     3456889999999999999998762   4455 68999999


Q ss_pred             cCCcceeccCccccCcccccEEEcccCcCCCCchhcccccCCCCEEEccCCCCCCcchHhhhcCCCCCEEEcccCcCccc
Q 045449          363 ANCSISGNIPQVVGNLSNLLVLELGGNNLTGPIPVTFSQLQTLQAFDLTRNKLAGPITDELCHLARLHSLVLQGNKFSGS  442 (823)
Q Consensus       363 ~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~  442 (823)
                      ++|.+++.     ...++|+.|++++|+++.. |..  ..++|+.|++++|++++.  ..+..+++|+.|+|++|.+++.
T Consensus       194 ~~n~l~~~-----~~~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~  263 (390)
T 3o6n_A          194 SYNLLSTL-----AIPIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKI  263 (390)
T ss_dssp             CSSCCSEE-----ECCSSCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEE
T ss_pred             cccccccc-----CCCCcceEEECCCCeeeec-ccc--ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCc
Confidence            99998854     3346899999999999854 443  357999999999999975  5789999999999999999999


Q ss_pred             ccccccCCCCCCeEeccCCccccccchhhhccCCCcEEeccccccccccCccccCCCCCcEEEcccCCCCCCCCCcccCc
Q 045449          443 IPSCLGNLTSVRVLYLGLNIFTSVLSSTIWNLKDILFIDVSSNFLDGPLSLDIGNLKVVIGLDFSRNNLSGDIPITIGEG  522 (823)
Q Consensus       443 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~ip~~~~~g  522 (823)
                      .|..|..+++|+.|+|++|++++ +|..+..+++|+.|++++|.++ .+|..+..++.|+.|++++|++++. |      
T Consensus       264 ~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~------  334 (390)
T 3o6n_A          264 MYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K------  334 (390)
T ss_dssp             ESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C------
T ss_pred             ChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C------
Confidence            99999999999999999999998 5667788999999999999998 5677889999999999999999842 2      


Q ss_pred             cCCCCCCCCCCCcccccCCcccCC
Q 045449          523 EIPRGGPFANLTAKSFMGNELLCG  546 (823)
Q Consensus       523 ~ip~~~~~~~~~~~~~~~n~~~c~  546 (823)
                          ...+..+..+.+.+|++.|.
T Consensus       335 ----~~~~~~L~~L~l~~N~~~~~  354 (390)
T 3o6n_A          335 ----LSTHHTLKNLTLSHNDWDCN  354 (390)
T ss_dssp             ----CCTTCCCSEEECCSSCEEHH
T ss_pred             ----chhhccCCEEEcCCCCccch
Confidence                23356778889999998875

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=8.6e-34  Score=332.60  Aligned_cols=311  Identities=14%  Similarity=0.104  Sum_probs=265.5

Q ss_pred             chhhhhccccccccCCccccccCCCCCcEEEccCCcccccCCcccccCCCCccEEEeeccccccccCccccCCCCCCeEE
Q 045449          204 PYLARLALATNNLVGVVPVTIFNMSALKEISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSITNSSKLSDLE  283 (823)
Q Consensus       204 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~lp~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  283 (823)
                      ++++.|++++|.++...+..|.++++|++|+|++|.+++..|..+. .+++|++|+|++|.+++..|..|+++++|++|+
T Consensus        51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  129 (597)
T 3oja_B           51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFA-YAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV  129 (597)
T ss_dssp             CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhc-CCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence            4567888999998877777788899999999999999865555554 489999999999999988888889999999999


Q ss_pred             eecccccccCCCccCCCcccCcccccCccccCCCCcccccccccCCCCceEEEeecCCCCccCCccccccccccceEEec
Q 045449          284 LGENLFSGFIPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGILPKSIGNFSLSLETILMA  363 (823)
Q Consensus       284 Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~  363 (823)
                      |++|.+++..+..|+++++|++|+|++|.+++.     .+..|.++++|+.|++++|.+++..   +..+ ++|++|+++
T Consensus       130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~-----~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l-~~L~~L~l~  200 (597)
T 3oja_B          130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERI-----EDDTFQATTSLQNLQLSSNRLTHVD---LSLI-PSLFHANVS  200 (597)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBC-----CTTTTTTCTTCCEEECTTSCCSBCC---GGGC-TTCSEEECC
T ss_pred             eeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCC-----ChhhhhcCCcCcEEECcCCCCCCcC---hhhh-hhhhhhhcc
Confidence            999999987777789999999999999999887     4457888999999999999998763   3445 689999999


Q ss_pred             CCcceeccCccccCcccccEEEcccCcCCCCchhcccccCCCCEEEccCCCCCCcchHhhhcCCCCCEEEcccCcCcccc
Q 045449          364 NCSISGNIPQVVGNLSNLLVLELGGNNLTGPIPVTFSQLQTLQAFDLTRNKLAGPITDELCHLARLHSLVLQGNKFSGSI  443 (823)
Q Consensus       364 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~  443 (823)
                      +|.+++.     ....+|+.|++++|.++.. |..+  .++|+.|+|++|.+++.  ..+..+++|+.|+|++|.+++.+
T Consensus       201 ~n~l~~l-----~~~~~L~~L~ls~n~l~~~-~~~~--~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~  270 (597)
T 3oja_B          201 YNLLSTL-----AIPIAVEELDASHNSINVV-RGPV--NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIM  270 (597)
T ss_dssp             SSCCSEE-----ECCTTCSEEECCSSCCCEE-ECSC--CSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEE
T ss_pred             cCccccc-----cCCchhheeeccCCccccc-cccc--CCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCC
Confidence            9998863     3456899999999999854 3333  36899999999999974  67899999999999999999999


Q ss_pred             cccccCCCCCCeEeccCCccccccchhhhccCCCcEEeccccccccccCccccCCCCCcEEEcccCCCCCCCCCcccCcc
Q 045449          444 PSCLGNLTSVRVLYLGLNIFTSVLSSTIWNLKDILFIDVSSNFLDGPLSLDIGNLKVVIGLDFSRNNLSGDIPITIGEGE  523 (823)
Q Consensus       444 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~ip~~~~~g~  523 (823)
                      |..|+.+++|+.|+|++|.+++ +|..+..+++|+.|+|++|.++ .+|..+..++.|+.|++++|++++. |       
T Consensus       271 ~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~-------  340 (597)
T 3oja_B          271 YHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K-------  340 (597)
T ss_dssp             SGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C-------
T ss_pred             HHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C-------
Confidence            9999999999999999999998 5777788999999999999999 6888899999999999999999843 2       


Q ss_pred             CCCCCCCCCCCcccccCCcccCCC
Q 045449          524 IPRGGPFANLTAKSFMGNELLCGL  547 (823)
Q Consensus       524 ip~~~~~~~~~~~~~~~n~~~c~~  547 (823)
                         ...+..+..+.+.+|++.|..
T Consensus       341 ---~~~~~~L~~L~l~~N~~~~~~  361 (597)
T 3oja_B          341 ---LSTHHTLKNLTLSHNDWDCNS  361 (597)
T ss_dssp             ---CCTTCCCSEEECCSSCEEHHH
T ss_pred             ---hhhcCCCCEEEeeCCCCCChh
Confidence               123567788899999998864

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=100.00  E-value=8.3e-33  Score=300.12  Aligned_cols=289  Identities=21%  Similarity=0.256  Sum_probs=234.5

Q ss_pred             chhhhhccccccccCCccccccCCCCCcEEEccCCcccccCCcccccCCCCccEEEeeccccccccCccccCCCCCCeEE
Q 045449          204 PYLARLALATNNLVGVVPVTIFNMSALKEISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSITNSSKLSDLE  283 (823)
Q Consensus       204 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~lp~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  283 (823)
                      .+++.++++++.++ .+|..+.  ++|++|+|++|.+++..|..+. .+++|++|+|++|++++..|..|.++++|++|+
T Consensus        33 c~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  108 (332)
T 2ft3_A           33 CHLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFK-GLQHLYALVLVNNKISKIHEKAFSPLRKLQKLY  108 (332)
T ss_dssp             EETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTT-TCTTCCEEECCSSCCCEECGGGSTTCTTCCEEE
T ss_pred             ccCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhh-CCCCCcEEECCCCccCccCHhHhhCcCCCCEEE
Confidence            46888899999888 4565553  6889999999998854444444 588999999999999988888899999999999


Q ss_pred             eecccccccCCCccCCCcccCcccccCccccCCCCcccccccccCCCCceEEEeecCCCC--ccCCccccccccccceEE
Q 045449          284 LGENLFSGFIPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLD--GILPKSIGNFSLSLETIL  361 (823)
Q Consensus       284 Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~--~~~p~~~~~~~~~L~~L~  361 (823)
                      |++|+++. +|..+.  ++|++|++++|.++..+     +..+.++++|+.|++++|.++  +..|..+..+  +|++|+
T Consensus       109 L~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~-----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l--~L~~L~  178 (332)
T 2ft3_A          109 ISKNHLVE-IPPNLP--SSLVELRIHDNRIRKVP-----KGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL--KLNYLR  178 (332)
T ss_dssp             CCSSCCCS-CCSSCC--TTCCEEECCSSCCCCCC-----SGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC--CCSCCB
T ss_pred             CCCCcCCc-cCcccc--ccCCEEECCCCccCccC-----HhHhCCCccCCEEECCCCccccCCCCcccccCC--ccCEEE
Confidence            99999884 454444  78999999999988763     345788899999999999986  4677777765  799999


Q ss_pred             ecCCcceeccCccccCcccccEEEcccCcCCCCchhcccccCCCCEEEccCCCCCCcchHhhhcCCCCCEEEcccCcCcc
Q 045449          362 MANCSISGNIPQVVGNLSNLLVLELGGNNLTGPIPVTFSQLQTLQAFDLTRNKLAGPITDELCHLARLHSLVLQGNKFSG  441 (823)
Q Consensus       362 L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g  441 (823)
                      +++|++++ +|..+.  ++|++|++++|++++..+..|..+++|++|+|++|++++..+..|..+++|+.|+|++|+++ 
T Consensus       179 l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-  254 (332)
T 2ft3_A          179 ISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-  254 (332)
T ss_dssp             CCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-
T ss_pred             CcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-
Confidence            99999886 455443  68899999999999888888899999999999999999888888889999999999999998 


Q ss_pred             cccccccCCCCCCeEeccCCccccccchhhhcc------CCCcEEeccccccc--cccCccccCCCCCcEEEcccCC
Q 045449          442 SIPSCLGNLTSVRVLYLGLNIFTSVLSSTIWNL------KDILFIDVSSNFLD--GPLSLDIGNLKVVIGLDFSRNN  510 (823)
Q Consensus       442 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l------~~L~~LdLs~N~l~--g~~p~~~~~l~~L~~L~ls~N~  510 (823)
                      .+|..+..+++|+.|++++|++++..+..+...      ..|+.|++++|.+.  +..|..+..++.|+.+++++|+
T Consensus       255 ~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          255 RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence            788888899999999999999998777776553      67889999999887  5667778889999999998874

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=100.00  E-value=1.3e-36  Score=345.71  Aligned_cols=290  Identities=18%  Similarity=0.155  Sum_probs=169.7

Q ss_pred             cccccCCCCCcEEEccCCcccccCCccc----ccCCCCccEEEeeccccccc----cCccccCCCCCCeEEeeccccccc
Q 045449          221 PVTIFNMSALKEISLLNNSLSGSLPSRI----DLSLPNVETLNLGINSFSGT----IPSSITNSSKLSDLELGENLFSGF  292 (823)
Q Consensus       221 p~~~~~l~~L~~L~Ls~N~l~g~lp~~~----~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~  292 (823)
                      +..+..+++|++|+|++|.+++..+..+    ....++|++|+|++|++++.    ++..+..+++|++|++++|.+++.
T Consensus       106 ~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~  185 (461)
T 1z7x_W          106 SSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEA  185 (461)
T ss_dssp             HHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred             HHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchH
Confidence            4444555555555555555543222211    11234566666666655542    244445556666666666666544


Q ss_pred             CCCccC-----CCcccCcccccCccccCCCCcccccccccCCCCceEEEeecCCCCccCC-----ccccccccccceEEe
Q 045449          293 IPNTIG-----NLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGILP-----KSIGNFSLSLETILM  362 (823)
Q Consensus       293 ~p~~~~-----~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p-----~~~~~~~~~L~~L~L  362 (823)
                      .+..+.     ..++|++|++++|.++..... .++..+..+++|+.|++++|.+++...     ..+..+ .+|++|++
T Consensus       186 ~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~-~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~-~~L~~L~L  263 (461)
T 1z7x_W          186 GVRVLCQGLKDSPCQLEALKLESCGVTSDNCR-DLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPS-SRLRTLWI  263 (461)
T ss_dssp             HHHHHHHHHHHSCCCCCEEECTTSCCBTTHHH-HHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTT-CCCCEEEC
T ss_pred             HHHHHHHHHhcCCCCceEEEccCCCCcHHHHH-HHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCC-CCceEEEC
Confidence            333332     244666666666666543110 123445566667777777776654321     111123 56777777


Q ss_pred             cCCcceec----cCccccCcccccEEEcccCcCCCCchhcccc-----cCCCCEEEccCCCCCCc----chHhhhcCCCC
Q 045449          363 ANCSISGN----IPQVVGNLSNLLVLELGGNNLTGPIPVTFSQ-----LQTLQAFDLTRNKLAGP----ITDELCHLARL  429 (823)
Q Consensus       363 ~~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~-----l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L  429 (823)
                      ++|.+++.    ++..+..+++|++|+|++|.+++..+..+..     .++|++|+|++|.+++.    ++..+..+++|
T Consensus       264 ~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L  343 (461)
T 1z7x_W          264 WECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFL  343 (461)
T ss_dssp             TTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSC
T ss_pred             cCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCc
Confidence            77777654    4556666777777778777776544443332     25778888888877765    45556667778


Q ss_pred             CEEEcccCcCcccccccccC-----CCCCCeEeccCCcccc----ccchhhhccCCCcEEeccccccccccCcccc----
Q 045449          430 HSLVLQGNKFSGSIPSCLGN-----LTSVRVLYLGLNIFTS----VLSSTIWNLKDILFIDVSSNFLDGPLSLDIG----  496 (823)
Q Consensus       430 ~~L~Ls~N~l~g~~p~~~~~-----l~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~----  496 (823)
                      ++|+|++|.+++..+..+..     .++|+.|+|++|.+++    .+|..+..+++|++||+++|.+++.-...+.    
T Consensus       344 ~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~  423 (461)
T 1z7x_W          344 LELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVR  423 (461)
T ss_dssp             CEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHT
T ss_pred             cEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhc
Confidence            88888888777665544432     5678888888888776    6777777778888888888877764221111    


Q ss_pred             -CCCCCcEEEcccCCCC
Q 045449          497 -NLKVVIGLDFSRNNLS  512 (823)
Q Consensus       497 -~l~~L~~L~ls~N~l~  512 (823)
                       ....|+.|++.++.+.
T Consensus       424 ~~~~~L~~L~~~~~~~~  440 (461)
T 1z7x_W          424 QPGCLLEQLVLYDIYWS  440 (461)
T ss_dssp             STTCCCCEEECTTCCCC
T ss_pred             cCCcchhheeecccccC
Confidence             2335666766666554

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=100.00  E-value=1.9e-32  Score=297.35  Aligned_cols=214  Identities=19%  Similarity=0.257  Sum_probs=117.8

Q ss_pred             EEEEcCCCCCccccCcccCCCCCCcEEEccCCCCCCCCCCCCCCCCCCCEEECCCCcCcCCCchhhhcCCCCcEEecccc
Q 045449           55 IGLNISSFNLQGTITPQLGNLSSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQLFGSLSSFIFNMSSMTTIDLSIN  134 (823)
Q Consensus        55 ~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N  134 (823)
                      +.+++++++++ .+|..+.  ++|++|+|++|+|++..|..|.++++|++|+|++|.|++..|..|.++++|++|+|++|
T Consensus        36 ~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  112 (332)
T 2ft3_A           36 RVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN  112 (332)
T ss_dssp             TEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS
T ss_pred             CEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC
Confidence            34555566665 4555553  57788888888887666777778888888888888877777777777777777777777


Q ss_pred             cccCccCccccCCCCCCccccccceeeeccceeeccCccccccchhhHHHHHhhcCCCcccCCcccCCcchhhhhccccc
Q 045449          135 RLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEIGNLTKLKEIISTITNSTVCEIPREIGNLPYLARLALATN  214 (823)
Q Consensus       135 ~l~~~~p~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~~l~~n~~~~~ip~~l~~l~~L~~L~Ls~N  214 (823)
                      +++ .+|..+       .  ++|++|++++|++++..+.                         .|.++++|++|++++|
T Consensus       113 ~l~-~l~~~~-------~--~~L~~L~l~~n~i~~~~~~-------------------------~~~~l~~L~~L~l~~n  157 (332)
T 2ft3_A          113 HLV-EIPPNL-------P--SSLVELRIHDNRIRKVPKG-------------------------VFSGLRNMNCIEMGGN  157 (332)
T ss_dssp             CCC-SCCSSC-------C--TTCCEEECCSSCCCCCCSG-------------------------GGSSCSSCCEEECCSC
T ss_pred             cCC-ccCccc-------c--ccCCEEECCCCccCccCHh-------------------------HhCCCccCCEEECCCC
Confidence            776 444433       2  5677777777766532221                         2333444555556665


Q ss_pred             ccc--CCccccccCCCCCcEEEccCCcccccCCcccccCCCCccEEEeeccccccccCccccCCCCCCeEEeeccccccc
Q 045449          215 NLV--GVVPVTIFNMSALKEISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSITNSSKLSDLELGENLFSGF  292 (823)
Q Consensus       215 ~l~--~~~p~~~~~l~~L~~L~Ls~N~l~g~lp~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~  292 (823)
                      .++  +..|..+..+ +|++|++++|.++ .+|..+.   ++|++|+|++|++++..|..+.++++|++|+|++|++++.
T Consensus       158 ~l~~~~~~~~~~~~l-~L~~L~l~~n~l~-~l~~~~~---~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~  232 (332)
T 2ft3_A          158 PLENSGFEPGAFDGL-KLNYLRISEAKLT-GIPKDLP---ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMI  232 (332)
T ss_dssp             CCBGGGSCTTSSCSC-CCSCCBCCSSBCS-SCCSSSC---SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCC
T ss_pred             ccccCCCCcccccCC-ccCEEECcCCCCC-ccCcccc---CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcC
Confidence            554  2444444444 5555555555554 2443321   3344444444444433333444444444444444444433


Q ss_pred             CCCccCCCcccCcccccCc
Q 045449          293 IPNTIGNLRNLEFGNIADN  311 (823)
Q Consensus       293 ~p~~~~~l~~L~~L~L~~N  311 (823)
                      .+..|..+++|++|+|++|
T Consensus       233 ~~~~~~~l~~L~~L~L~~N  251 (332)
T 2ft3_A          233 ENGSLSFLPTLRELHLDNN  251 (332)
T ss_dssp             CTTGGGGCTTCCEEECCSS
T ss_pred             ChhHhhCCCCCCEEECCCC
Confidence            3333333333333333333

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=100.00  E-value=1.1e-36  Score=346.23  Aligned_cols=398  Identities=19%  Similarity=0.150  Sum_probs=246.2

Q ss_pred             CcEEEEEcCCCCCccccCcc-cCCCCCCcEEEccCCCCCC----CCCCCCCCCCCCCEEECCCCcCcCCCchhhh-cCC-
Q 045449           52 HRVIGLNISSFNLQGTITPQ-LGNLSSLQTLDLSHNKLSG----NIPSSIFNMHTLKLLDFSDNQLFGSLSSFIF-NMS-  124 (823)
Q Consensus        52 ~~v~~L~L~~~~l~g~~~~~-l~~l~~L~~L~Ls~N~l~g----~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~-~l~-  124 (823)
                      .+++.|||++++++...... +..+++|++|+|++|+++.    .++..+..+++|++|||++|.+++..+..+. .+. 
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~   82 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   82 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence            36888999999887544333 6778889999999999874    3566777888999999999988765554443 455 


Q ss_pred             ---CCcEEecccccccCccCccccCCCCCCccccccceeeeccceeeccCccccccchhhHHHHHhhcCCCcccCCcccC
Q 045449          125 ---SMTTIDLSINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEIGNLTKLKEIISTITNSTVCEIPREIG  201 (823)
Q Consensus       125 ---~L~~L~Ls~N~l~~~~p~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~~l~~n~~~~~ip~~l~  201 (823)
                         +|++|+|++|+++..-   +..+|..+..+++|++|+|++|.+++..+..+..      .              .+.
T Consensus        83 ~~~~L~~L~L~~n~i~~~~---~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~------~--------------l~~  139 (461)
T 1z7x_W           83 PSCKIQKLSLQNCCLTGAG---CGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCE------G--------------LLD  139 (461)
T ss_dssp             TTCCCCEEECTTSCCBGGG---HHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHH------H--------------HTS
T ss_pred             CCCceeEEEccCCCCCHHH---HHHHHHHHccCCceeEEECCCCcCchHHHHHHHH------H--------------Hhc
Confidence               6999999999887321   1112333478888999999999876433222210      0              012


Q ss_pred             CcchhhhhccccccccCCc----cccccCCCCCcEEEccCCcccccCCcccc----cCCCCccEEEeeccccccc----c
Q 045449          202 NLPYLARLALATNNLVGVV----PVTIFNMSALKEISLLNNSLSGSLPSRID----LSLPNVETLNLGINSFSGT----I  269 (823)
Q Consensus       202 ~l~~L~~L~Ls~N~l~~~~----p~~~~~l~~L~~L~Ls~N~l~g~lp~~~~----~~l~~L~~L~Ls~N~l~~~----~  269 (823)
                      ..++|++|+|++|++++..    +..+..+++|++|++++|.+++..+..+.    ...++|++|+|++|.+++.    +
T Consensus       140 ~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l  219 (461)
T 1z7x_W          140 PQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDL  219 (461)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHH
T ss_pred             CCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHH
Confidence            3446788888888887643    45556677888888888877643333222    1345777777777777653    4


Q ss_pred             CccccCCCCCCeEEeecccccccC-----CCccCCCcccCcccccCccccCCCCcccccccccCCCCceEEEeecCCCCc
Q 045449          270 PSSITNSSKLSDLELGENLFSGFI-----PNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDG  344 (823)
Q Consensus       270 p~~~~~l~~L~~L~Ls~N~l~~~~-----p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~  344 (823)
                      +..+..+++|++|++++|.+++..     +..+..+++|++|++++|.++..... .++..+..+++|+.|++++|.+++
T Consensus       220 ~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~-~l~~~l~~~~~L~~L~Ls~n~i~~  298 (461)
T 1z7x_W          220 CGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCG-DLCRVLRAKESLKELSLAGNELGD  298 (461)
T ss_dssp             HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHH-HHHHHHHHCTTCCEEECTTCCCHH
T ss_pred             HHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHH-HHHHHHhhCCCcceEECCCCCCch
Confidence            666666777777777777766432     22223455555555555555432100 012233444455555555554443


Q ss_pred             cCCccccccccccceEEecCCcceeccCccccCcccccEEEcccCcCCCC----chhcccccCCCCEEEccCCCCCCcch
Q 045449          345 ILPKSIGNFSLSLETILMANCSISGNIPQVVGNLSNLLVLELGGNNLTGP----IPVTFSQLQTLQAFDLTRNKLAGPIT  420 (823)
Q Consensus       345 ~~p~~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~----~p~~~~~l~~L~~L~Ls~N~l~~~~p  420 (823)
                      ..+..+...                    .....++|++|+|++|.+++.    ++..+..+++|++|+|++|++++..+
T Consensus       299 ~~~~~l~~~--------------------l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~  358 (461)
T 1z7x_W          299 EGARLLCET--------------------LLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGV  358 (461)
T ss_dssp             HHHHHHHHH--------------------HTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHH
T ss_pred             HHHHHHHHH--------------------hccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccH
Confidence            222222111                    001124677777777777654    45556666777777777777776555


Q ss_pred             Hhhhc-----CCCCCEEEcccCcCcc----cccccccCCCCCCeEeccCCccccccchhhh-----ccCCCcEEeccccc
Q 045449          421 DELCH-----LARLHSLVLQGNKFSG----SIPSCLGNLTSVRVLYLGLNIFTSVLSSTIW-----NLKDILFIDVSSNF  486 (823)
Q Consensus       421 ~~~~~-----l~~L~~L~Ls~N~l~g----~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~-----~l~~L~~LdLs~N~  486 (823)
                      ..++.     .++|+.|+|++|.+++    .+|..+..+++|++|+|++|++++.....+.     ....|+.|++.++.
T Consensus       359 ~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~  438 (461)
T 1z7x_W          359 RELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIY  438 (461)
T ss_dssp             HHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCC
T ss_pred             HHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccc
Confidence            54443     5677777777777775    6677777777777777777777764333322     12357777777776


Q ss_pred             cccccCc
Q 045449          487 LDGPLSL  493 (823)
Q Consensus       487 l~g~~p~  493 (823)
                      +....+.
T Consensus       439 ~~~~~~~  445 (461)
T 1z7x_W          439 WSEEMED  445 (461)
T ss_dssp             CCHHHHH
T ss_pred             cCHHHHH
Confidence            6654443

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=100.00  E-value=4.7e-32  Score=293.96  Aligned_cols=291  Identities=22%  Similarity=0.238  Sum_probs=207.0

Q ss_pred             cchhhhhccccccccCCccccccCCCCCcEEEccCCcccccCCcccccCCCCccEEEeeccccccccCccccCCCCCCeE
Q 045449          203 LPYLARLALATNNLVGVVPVTIFNMSALKEISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSITNSSKLSDL  282 (823)
Q Consensus       203 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~lp~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  282 (823)
                      ..+++.++++++.++. +|..+.  +.+++|+|++|.+++ ++...+..+++|++|+|++|++++..|..|.++++|++|
T Consensus        30 ~c~l~~l~~~~~~l~~-lp~~~~--~~l~~L~L~~n~i~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  105 (330)
T 1xku_A           30 QCHLRVVQCSDLGLEK-VPKDLP--PDTALLDLQNNKITE-IKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERL  105 (330)
T ss_dssp             EEETTEEECTTSCCCS-CCCSCC--TTCCEEECCSSCCCC-BCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEE
T ss_pred             cCCCeEEEecCCCccc-cCccCC--CCCeEEECCCCcCCE-eChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEE
Confidence            3466777777777773 454443  567778888888774 443333347788888888888877777778888888888


Q ss_pred             EeecccccccCCCccCCCcccCcccccCccccCCCCcccccccccCCCCceEEEeecCCCCc--cCCccccccccccceE
Q 045449          283 ELGENLFSGFIPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDG--ILPKSIGNFSLSLETI  360 (823)
Q Consensus       283 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~--~~p~~~~~~~~~L~~L  360 (823)
                      +|++|+++. +|..+.  ++|++|++++|.+++.     .+..+.++++|+.|++++|.+..  ..+..+..+ ++|++|
T Consensus       106 ~Ls~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~-----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~~L~~L  176 (330)
T 1xku_A          106 YLSKNQLKE-LPEKMP--KTLQELRVHENEITKV-----RKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM-KKLSYI  176 (330)
T ss_dssp             ECCSSCCSB-CCSSCC--TTCCEEECCSSCCCBB-----CHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGC-TTCCEE
T ss_pred             ECCCCcCCc-cChhhc--ccccEEECCCCccccc-----CHhHhcCCccccEEECCCCcCCccCcChhhccCC-CCcCEE
Confidence            888887774 344433  6777888888877765     34457777788888888887753  566677777 678888


Q ss_pred             EecCCcceeccCccccCcccccEEEcccCcCCCCchhcccccCCCCEEEccCCCCCCcchHhhhcCCCCCEEEcccCcCc
Q 045449          361 LMANCSISGNIPQVVGNLSNLLVLELGGNNLTGPIPVTFSQLQTLQAFDLTRNKLAGPITDELCHLARLHSLVLQGNKFS  440 (823)
Q Consensus       361 ~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  440 (823)
                      ++++|.++. +|..+.  ++|++|++++|++++..|..|..+++|++|+|++|++++..+..+..+++|+.|+|++|+++
T Consensus       177 ~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  253 (330)
T 1xku_A          177 RIADTNITT-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV  253 (330)
T ss_dssp             ECCSSCCCS-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS
T ss_pred             ECCCCcccc-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc
Confidence            888887774 444433  67888888888887777777788888888888888887776767777888888888888887


Q ss_pred             ccccccccCCCCCCeEeccCCccccccchhhhc------cCCCcEEecccccccc--ccCccccCCCCCcEEEcccCC
Q 045449          441 GSIPSCLGNLTSVRVLYLGLNIFTSVLSSTIWN------LKDILFIDVSSNFLDG--PLSLDIGNLKVVIGLDFSRNN  510 (823)
Q Consensus       441 g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~------l~~L~~LdLs~N~l~g--~~p~~~~~l~~L~~L~ls~N~  510 (823)
                       .+|..+..+++|++|+|++|++++..+..|..      ...|+.|++++|.+..  ..|..+..+..++.+++++|+
T Consensus       254 -~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          254 -KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK  330 (330)
T ss_dssp             -SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred             -cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence             67777777888888888888887766666543      3667788888887763  445667777888888888774

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=100.00  E-value=7.9e-32  Score=292.15  Aligned_cols=244  Identities=21%  Similarity=0.289  Sum_probs=177.1

Q ss_pred             EEEcCCCCCccccCcccCCCCCCcEEEccCCCCCCCCCCCCCCCCCCCEEECCCCcCcCCCchhhhcCCCCcEEeccccc
Q 045449           56 GLNISSFNLQGTITPQLGNLSSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQLFGSLSSFIFNMSSMTTIDLSINR  135 (823)
Q Consensus        56 ~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~  135 (823)
                      .+++++++++ .+|..+.  ++|++|+|++|+|++..+..|.++++|++|+|++|.+++..|..|.++++|++|+|++|+
T Consensus        35 ~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~  111 (330)
T 1xku_A           35 VVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ  111 (330)
T ss_dssp             EEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC
T ss_pred             EEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCc
Confidence            3444455555 4555443  689999999999998888899999999999999999998889999999999999999999


Q ss_pred             ccCccCccccCCCCCCccccccceeeeccceeeccCccccccchhhHHHHHhhcCCCcccCCcccCCcchhhhhcccccc
Q 045449          136 LSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEIGNLTKLKEIISTITNSTVCEIPREIGNLPYLARLALATNN  215 (823)
Q Consensus       136 l~~~~p~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~~l~~n~~~~~ip~~l~~l~~L~~L~Ls~N~  215 (823)
                      ++ .+|..+       .  ++|++|++++|++++..+..                         |.++++|++|++++|+
T Consensus       112 l~-~l~~~~-------~--~~L~~L~l~~n~l~~~~~~~-------------------------~~~l~~L~~L~l~~n~  156 (330)
T 1xku_A          112 LK-ELPEKM-------P--KTLQELRVHENEITKVRKSV-------------------------FNGLNQMIVVELGTNP  156 (330)
T ss_dssp             CS-BCCSSC-------C--TTCCEEECCSSCCCBBCHHH-------------------------HTTCTTCCEEECCSSC
T ss_pred             CC-ccChhh-------c--ccccEEECCCCcccccCHhH-------------------------hcCCccccEEECCCCc
Confidence            87 455433       2  68999999999887543322                         3455667788888888


Q ss_pred             ccC--CccccccCCCCCcEEEccCCcccccCCcccccCCCCccEEEeeccccccccCccccCCCCCCeEEeecccccccC
Q 045449          216 LVG--VVPVTIFNMSALKEISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSITNSSKLSDLELGENLFSGFI  293 (823)
Q Consensus       216 l~~--~~p~~~~~l~~L~~L~Ls~N~l~g~lp~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~  293 (823)
                      ++.  ..+..+.++++|++|++++|.++ .+|..+.   ++|++|+|++|++++..|..+.++++|++|+|++|++++..
T Consensus       157 l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~  232 (330)
T 1xku_A          157 LKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP---PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVD  232 (330)
T ss_dssp             CCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSCC---TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEEC
T ss_pred             CCccCcChhhccCCCCcCEEECCCCccc-cCCcccc---ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeC
Confidence            853  66777778888888888888887 5665543   57777777777777777777777777777777777777766


Q ss_pred             CCccCCCcccCcccccCccccCCCCcccccccccCCCCceEEEeecCCCCccCC
Q 045449          294 PNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGILP  347 (823)
Q Consensus       294 p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p  347 (823)
                      +..|..+++|++|+|++|+++..      +..+..+++|++|++++|++++..+
T Consensus       233 ~~~~~~l~~L~~L~L~~N~l~~l------p~~l~~l~~L~~L~l~~N~i~~~~~  280 (330)
T 1xku_A          233 NGSLANTPHLRELHLNNNKLVKV------PGGLADHKYIQVVYLHNNNISAIGS  280 (330)
T ss_dssp             TTTGGGSTTCCEEECCSSCCSSC------CTTTTTCSSCCEEECCSSCCCCCCT
T ss_pred             hhhccCCCCCCEEECCCCcCccC------ChhhccCCCcCEEECCCCcCCccCh
Confidence            66666666666666666666532      3344555555555555555554433

>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...

Probab=99.97  E-value=8.4e-34  Score=299.50  Aligned_cols=151  Identities=30%  Similarity=0.435  Sum_probs=133.6

Q ss_pred             ccCCccceeeccC------------CeEEEEEEehHhh---HHHHHHHHHHHHHHhhcchhhHHH---------------
Q 045449          628 DRFSENNLIGIGN------------GMEVAVKVFHQQY---ERALKSFEDECEVRKRIRHRNLVK---------------  677 (823)
Q Consensus       628 ~~f~~~~~lg~g~------------~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~---------------  677 (823)
                      ++|...+.||+|+            |+.||||++.+..   ....+.+.+|++++++++|||||+               
T Consensus        32 ~dy~i~~~lG~G~fg~V~~a~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~yivm  111 (311)
T 4aw0_A           32 EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGL  111 (311)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             cccEEEEEEecccCeEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEE
Confidence            5788999999997            6779999997543   233468999999999999999998               


Q ss_pred             -------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccc
Q 045449          678 -------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQ  732 (823)
Q Consensus       678 -------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~  732 (823)
                                               +++|++.+|+|+|+++|+||||||+|||++.++.+||+|||+|+.+.........
T Consensus       112 Ey~~gG~L~~~i~~~~~l~e~~~~~~~~qi~~al~ylH~~~IiHRDlKPeNILl~~~g~vKl~DFGla~~~~~~~~~~~~  191 (311)
T 4aw0_A          112 SYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARA  191 (311)
T ss_dssp             CCCTTEEHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTSCEEECCCTTCEECCTTTTCCCB
T ss_pred             ecCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCCccCCCCHHHeEEcCCCCEEEEEcCCceecCCCCCcccc
Confidence                                     4789999999999999999999999999999999999999999987654443445


Q ss_pred             cccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCC
Q 045449          733 TQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       733 ~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      ...+||+.|||||++.+..|+.++||||+||++|+|++|..||.+.
T Consensus       192 ~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~  237 (311)
T 4aw0_A          192 NSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAG  237 (311)
T ss_dssp             CCCCSCGGGCCHHHHHHSCBCHHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             cCcccCcccCCHHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence            5678999999999999999999999999999999999999999764

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.97  E-value=2.5e-34  Score=337.54  Aligned_cols=438  Identities=14%  Similarity=0.088  Sum_probs=302.1

Q ss_pred             CCccceeeeeCCCCCcEEEEEcCCCCCccccCcccCCCCCCcEEEccCCCC---CCCCCCCCC------------CCCCC
Q 045449           38 SVCIWIGITCDVNSHRVIGLNISSFNLQGTITPQLGNLSSLQTLDLSHNKL---SGNIPSSIF------------NMHTL  102 (823)
Q Consensus        38 ~~c~w~gv~c~~~~~~v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~N~l---~g~~p~~~~------------~l~~L  102 (823)
                      -|++|.++.+..  .  ..+.+.. .....++..+..+++|++|+|+++..   .+.+|..++            .+++|
T Consensus        40 vck~W~~~~~~~--~--~~l~~~~-~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L  114 (592)
T 3ogk_B           40 VCRRWFKIDSET--R--EHVTMAL-CYTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQL  114 (592)
T ss_dssp             SCHHHHHHHHHH--C--CEEEESC-GGGSCHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTC
T ss_pred             HhHHHHHhhhcc--c--cEEEEee-ccccChHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCC
Confidence            355899996532  1  2233332 23333444567788999999988543   245665555            68999


Q ss_pred             CEEECCCCcCcCCCchhhhcC--CCCcEEecccccccCccCccccCCCCCCccccccceeeeccceeeccCccccccchh
Q 045449          103 KLLDFSDNQLFGSLSSFIFNM--SSMTTIDLSINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEIGNLTK  180 (823)
Q Consensus       103 ~~L~Ls~N~l~~~~p~~~~~l--~~L~~L~Ls~N~l~~~~p~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~  180 (823)
                      ++|+|++|.+++..+..+...  .+|++|+|++|.-.  .+..+   +....++++|++|+|++|.+++.-..++.    
T Consensus       115 ~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~--~~~~l---~~~~~~~~~L~~L~L~~~~~~~~~~~~l~----  185 (592)
T 3ogk_B          115 KSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGF--TTDGL---LSIVTHCRKIKTLLMEESSFSEKDGKWLH----  185 (592)
T ss_dssp             CEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEE--EHHHH---HHHHHHCTTCSEEECTTCEEECCCSHHHH----
T ss_pred             CeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCc--CHHHH---HHHHhhCCCCCEEECccccccCcchhHHH----
Confidence            999999999988878877764  45999999998721  11111   11125789999999999998754322211    


Q ss_pred             hHHHHHhhcCCCcccCCcccCCcchhhhhccccccccC----CccccccCCCCCcEEEccCCcccccCCcccccCCCCcc
Q 045449          181 LKEIISTITNSTVCEIPREIGNLPYLARLALATNNLVG----VVPVTIFNMSALKEISLLNNSLSGSLPSRIDLSLPNVE  256 (823)
Q Consensus       181 L~~L~~l~~n~~~~~ip~~l~~l~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~Ls~N~l~g~lp~~~~~~l~~L~  256 (823)
                        .               .+.++++|++|+++.|.+++    .++..+.++++|++|+|++|.+.+ +|..+.. +++|+
T Consensus       186 --~---------------~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~-~~~L~  246 (592)
T 3ogk_B          186 --E---------------LAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKA-AANLE  246 (592)
T ss_dssp             --H---------------HHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHH-CTTCC
T ss_pred             --H---------------HHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhh-hhHHH
Confidence              1               12345677888888888873    344455678888888888888874 6655544 88888


Q ss_pred             EEEeeccccc---cccCccccCCCCCCeEEeecccccccCCCccCCCcccCcccccCccccCCCCcccccccccCCCCce
Q 045449          257 TLNLGINSFS---GTIPSSITNSSKLSDLELGENLFSGFIPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLK  333 (823)
Q Consensus       257 ~L~Ls~N~l~---~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~l~~L~  333 (823)
                      +|+++.+...   +..+..+..+++|+.|+++++. .+.+|..+..+++|++|+|++|.+++..    ....+..+++|+
T Consensus       247 ~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~l~~~~~~~~~L~~L~Ls~~~l~~~~----~~~~~~~~~~L~  321 (592)
T 3ogk_B          247 EFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG-PNEMPILFPFAAQIRKLDLLYALLETED----HCTLIQKCPNLE  321 (592)
T ss_dssp             EEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC-TTTGGGGGGGGGGCCEEEETTCCCCHHH----HHHHHTTCTTCC
T ss_pred             hhcccccccccchHHHHHHhhccccccccCccccc-hhHHHHHHhhcCCCcEEecCCCcCCHHH----HHHHHHhCcCCC
Confidence            8888754332   3445567778888888888753 3456777788888888888888865431    223457788888


Q ss_pred             EEEeecCCCCccCCccccccccccceEEec-----------CCcceecc-CccccCcccccEEEcccCcCCCCchhcccc
Q 045449          334 VLIVTGNPLDGILPKSIGNFSLSLETILMA-----------NCSISGNI-PQVVGNLSNLLVLELGGNNLTGPIPVTFSQ  401 (823)
Q Consensus       334 ~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~-----------~N~l~~~~-p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~  401 (823)
                      .|+++++...+.++..+..+ ++|++|+++           .|.+++.. +..+..+++|++|+++.|++++..+..+..
T Consensus       322 ~L~L~~~~~~~~l~~~~~~~-~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~  400 (592)
T 3ogk_B          322 VLETRNVIGDRGLEVLAQYC-KQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGT  400 (592)
T ss_dssp             EEEEEGGGHHHHHHHHHHHC-TTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHH
T ss_pred             EEeccCccCHHHHHHHHHhC-CCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHh
Confidence            88888433333333333445 678888888           35666442 333456788888888888888777776665


Q ss_pred             -cCCCCEEEcc----CCCCCCc-----chHhhhcCCCCCEEEcccC--cCcccccccccC-CCCCCeEeccCCccccc-c
Q 045449          402 -LQTLQAFDLT----RNKLAGP-----ITDELCHLARLHSLVLQGN--KFSGSIPSCLGN-LTSVRVLYLGLNIFTSV-L  467 (823)
Q Consensus       402 -l~~L~~L~Ls----~N~l~~~-----~p~~~~~l~~L~~L~Ls~N--~l~g~~p~~~~~-l~~L~~L~Ls~N~l~~~-~  467 (823)
                       +++|+.|+++    .|++++.     ++..+.++++|+.|+|+++  .+++..+..+.. +++|+.|+|++|.+++. +
T Consensus       401 ~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~  480 (592)
T 3ogk_B          401 YLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGL  480 (592)
T ss_dssp             HCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHH
T ss_pred             hCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHH
Confidence             8888888885    7788864     4555677888888888743  366665555543 78888889988888773 4


Q ss_pred             chhhhccCCCcEEeccccccccc-cCccccCCCCCcEEEcccCCCCCC
Q 045449          468 SSTIWNLKDILFIDVSSNFLDGP-LSLDIGNLKVVIGLDFSRNNLSGD  514 (823)
Q Consensus       468 p~~~~~l~~L~~LdLs~N~l~g~-~p~~~~~l~~L~~L~ls~N~l~g~  514 (823)
                      +..+..+++|+.|++++|.+++. ++..+..++.|++|++++|++++.
T Consensus       481 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~  528 (592)
T 3ogk_B          481 MEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT  528 (592)
T ss_dssp             HHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred             HHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence            55567788888999998888765 344456788888899998888764

>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}

Probab=99.97  E-value=5.4e-33  Score=294.14  Aligned_cols=151  Identities=27%  Similarity=0.392  Sum_probs=122.2

Q ss_pred             ccCCccceeeccC---------CeEEEEEEehHh--hHHHHHHHHHHHHHHhhcchhhHHH-------------------
Q 045449          628 DRFSENNLIGIGN---------GMEVAVKVFHQQ--YERALKSFEDECEVRKRIRHRNLVK-------------------  677 (823)
Q Consensus       628 ~~f~~~~~lg~g~---------~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~-------------------  677 (823)
                      +++...+.||+|+         ...||||+++..  .....++|.+|++++++++|||||+                   
T Consensus        36 ~~l~l~~~iG~G~fG~Vy~~~~~~~vAvK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~~~~~iVmEy~~g  115 (307)
T 3omv_A           36 SEVMLSTRIGSGSFGTVYKGKWHGDVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTKDNLAIVTQWCEG  115 (307)
T ss_dssp             TSCCEEEECCCCSSSEEEEEESSSEEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSCEEEEECCSS
T ss_pred             HHeEEeeEEeeCCCcEEEEEEECCcEEEEEEEecCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEECCeEEEEEEcCCC
Confidence            4566678899987         335899998633  2455688999999999999999998                   


Q ss_pred             ---------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccc
Q 045449          678 ---------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTL  736 (823)
Q Consensus       678 ---------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~  736 (823)
                                           ++.|++.+|+|+|+++||||||||+|||+++++.+||+|||+|+..............+
T Consensus       116 GsL~~~l~~~~~~l~~~~~~~i~~qia~gL~yLH~~~IiHRDlKp~NILl~~~~~~Ki~DFGla~~~~~~~~~~~~~~~~  195 (307)
T 3omv_A          116 SSLYKHLHVQETKFQMFQLIDIARQTAQGMDYLHAKNIIHRDMKSNNIFLHEGLTVKIGDFGLATVKSRWSGSQQVEQPT  195 (307)
T ss_dssp             CBHHHHHHTSCCCCCHHHHHHHHHHHHHHHHHHHHTTCBCSCCCSSSEEEETTEEEEECCCSSCBC------------CC
T ss_pred             CCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHCCccCCccCHHHEEECCCCcEEEeeccCceecccCCcceeecccc
Confidence                                 46788999999999999999999999999999999999999999765443333345678


Q ss_pred             cCCCcCcccccCC---CccccccceehhhhhhccccCCCCCcCCC
Q 045449          737 ATIGYMAPEYGTK---GRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       737 gt~~y~aPE~~~~---~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      ||+.|||||++.+   +.|+.++|||||||++||+++|+.||.+.
T Consensus       196 GT~~ymAPE~l~~~~~~~y~~ksDVwS~Gvvl~Elltg~~Pf~~~  240 (307)
T 3omv_A          196 GSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHI  240 (307)
T ss_dssp             CCTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTC
T ss_pred             cCCCccCHHHhhccCCCCCCcHHHhHhHHHHHHHHHHCCCCCCCC
Confidence            9999999999853   46899999999999999999999999764

>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*

Probab=99.97  E-value=2.1e-33  Score=300.91  Aligned_cols=149  Identities=25%  Similarity=0.299  Sum_probs=130.8

Q ss_pred             ccCCccceeeccC------------CeEEEEEEehHhhHHHHHHHHHHHHHHhhcchhhHHH------------------
Q 045449          628 DRFSENNLIGIGN------------GMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVK------------------  677 (823)
Q Consensus       628 ~~f~~~~~lg~g~------------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~------------------  677 (823)
                      +.|+..+.||+|+            |+.||||++........+.+.+|++++++++|||||+                  
T Consensus        74 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~ivmEy~  153 (346)
T 4fih_A           74 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFL  153 (346)
T ss_dssp             GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCSSGGGGHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEECCC
T ss_pred             HhcEEeEEeecCcCeEEEEEEECCCCCEEEEEEEecCchhHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEeCC
Confidence            4577778899986            6779999997655444567899999999999999998                  


Q ss_pred             ---------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccc
Q 045449          678 ---------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTL  736 (823)
Q Consensus       678 ---------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~  736 (823)
                                           ++.|++.+|+|+|+.+||||||||+|||++.++.+||+|||+|+.+.....  .....+
T Consensus       154 ~gg~L~~~l~~~~l~e~~~~~~~~qi~~aL~ylH~~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~~--~~~~~~  231 (346)
T 4fih_A          154 EGGALTDIVTHTRMNEEQIAAVCLAVLQALSVLHAQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVP--RRKSLV  231 (346)
T ss_dssp             TTEEHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTCCEEECCCTTCEECCSSSC--CBCCCC
T ss_pred             CCCcHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCcccccCCHHHEEECCCCCEEEecCcCceecCCCCC--cccccc
Confidence                                 468999999999999999999999999999999999999999998754332  234678


Q ss_pred             cCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCC
Q 045449          737 ATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       737 gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      ||+.|||||++.+..|+.++||||+||++|+|++|..||.+.
T Consensus       232 GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~  273 (346)
T 4fih_A          232 GTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNE  273 (346)
T ss_dssp             SCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTS
T ss_pred             cCcCcCCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCc
Confidence            999999999999999999999999999999999999999764

>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*

Probab=99.97  E-value=3.1e-33  Score=296.01  Aligned_cols=151  Identities=25%  Similarity=0.340  Sum_probs=128.7

Q ss_pred             cCCccceeeccC-----------------CeEEEEEEehHhhHHHHHHHHHHHHHHhhcchhhHHH--------------
Q 045449          629 RFSENNLIGIGN-----------------GMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVK--------------  677 (823)
Q Consensus       629 ~f~~~~~lg~g~-----------------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~--------------  677 (823)
                      +|...+.||+|+                 +..||||+++.......++|.+|++++++++|||||+              
T Consensus        14 ~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~lV   93 (299)
T 4asz_A           14 NIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVEGDPLIMV   93 (299)
T ss_dssp             GEEEEEEEEC--CCCEEEEEECSCC----CEEEEEEEECSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEEEE
T ss_pred             HeEEeeEEeeCCCcEEEEEEECCcccCCCCEEEEEEEeCCCChHHHHHHHHHHHHHHhCCCCCCccEEEEEeeCCEEEEE
Confidence            455567777775                 3569999998776777789999999999999999998              


Q ss_pred             ---------------------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecc
Q 045449          678 ---------------------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFG  718 (823)
Q Consensus       678 ---------------------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfG  718 (823)
                                                             ++.|++++|+|+|+++||||||||+|||++.++.+||+|||
T Consensus        94 ~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~iiHRDlKp~NILl~~~~~~Ki~DFG  173 (299)
T 4asz_A           94 FEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYLASQHFVHRDLATRNCLVGENLLVKIGDFG  173 (299)
T ss_dssp             EECCTTCBHHHHHHHTSHHHHHC----CCCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGGCEEECCCS
T ss_pred             EEcCCCCcHHHHHHhcCcccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHhCCcccCccCHhhEEECCCCcEEECCcc
Confidence                                                   24588889999999999999999999999999999999999


Q ss_pred             cccccCCCCccccccccccCCCcCcccccCCCccccccceehhhhhhccccC-CCCCcCCCc
Q 045449          719 IAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKET-RSMTVGETC  779 (823)
Q Consensus       719 la~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~-~~~~~~~~~  779 (823)
                      +|+.....+.........||+.|||||++.++.|+.++|||||||++||+++ |+.||.+..
T Consensus       174 la~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~k~DVwS~Gvvl~Ellt~G~~Pf~~~~  235 (299)
T 4asz_A          174 MSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLS  235 (299)
T ss_dssp             CHHHHTGGGCEEETTTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSC
T ss_pred             cceecCCCCceeecCceecChhhcCHHHHcCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCC
Confidence            9997655444333445679999999999999999999999999999999998 899997753

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.97  E-value=8.7e-31  Score=286.76  Aligned_cols=278  Identities=17%  Similarity=0.168  Sum_probs=205.8

Q ss_pred             CCCcEEEccCCcccccCCcccccCCCCccEEEeeccccccccCccccCCCCCCeEEeecccccccCCCccCCCcccCccc
Q 045449          228 SALKEISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSITNSSKLSDLELGENLFSGFIPNTIGNLRNLEFGN  307 (823)
Q Consensus       228 ~~L~~L~Ls~N~l~g~lp~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  307 (823)
                      +.....++++|.++ .+|..+.   ++|++|+|++|++++..+..+.++++|++|+|++|++++..|..|.++++|++|+
T Consensus        31 ~~~~~c~~~~~~l~-~iP~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  106 (353)
T 2z80_A           31 DRNGICKGSSGSLN-SIPSGLT---EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLD  106 (353)
T ss_dssp             CTTSEEECCSTTCS-SCCTTCC---TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred             CCCeEeeCCCCCcc-ccccccc---ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEE
Confidence            33445666777776 6666543   4677777777777765555677777777777777777777777777777777777


Q ss_pred             ccCccccCCCCcccccccccCCCCceEEEeecCCCCccCC-ccccccccccceEEecCC-cceeccCccccCcccccEEE
Q 045449          308 IADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGILP-KSIGNFSLSLETILMANC-SISGNIPQVVGNLSNLLVLE  385 (823)
Q Consensus       308 L~~N~l~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p-~~~~~~~~~L~~L~L~~N-~l~~~~p~~~~~l~~L~~L~  385 (823)
                      |++|++++.     .+..+.++++|++|++++|++++..+ ..+..+ ++|++|++++| .+++..+..|.++++|++|+
T Consensus       107 Ls~n~l~~~-----~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l-~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~  180 (353)
T 2z80_A          107 LSYNYLSNL-----SSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHL-TKLQILRVGNMDTFTKIQRKDFAGLTFLEELE  180 (353)
T ss_dssp             CCSSCCSSC-----CHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTC-TTCCEEEEEESSSCCEECTTTTTTCCEEEEEE
T ss_pred             CCCCcCCcC-----CHhHhCCCccCCEEECCCCCCcccCchhhhccC-CCCcEEECCCCccccccCHHHccCCCCCCEEE
Confidence            777777765     22346677777777777777775443 356666 67888888877 46666677788888888888


Q ss_pred             cccCcCCCCchhcccccCCCCEEEccCCCCCCcchHhhhcCCCCCEEEcccCcCccccccccc---CCCCCCeEeccCCc
Q 045449          386 LGGNNLTGPIPVTFSQLQTLQAFDLTRNKLAGPITDELCHLARLHSLVLQGNKFSGSIPSCLG---NLTSVRVLYLGLNI  462 (823)
Q Consensus       386 Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~---~l~~L~~L~Ls~N~  462 (823)
                      +++|++++..|..+..+++|++|++++|+++...+..+..+++|+.|+|++|.+++..+..+.   ..+.++.++|++|.
T Consensus       181 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~  260 (353)
T 2z80_A          181 IDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVK  260 (353)
T ss_dssp             EEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCB
T ss_pred             CCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhcccccccc
Confidence            888888877788888888888888888888754444455678888888888888876655443   35667888888888


Q ss_pred             ccc----ccchhhhccCCCcEEeccccccccccCcc-ccCCCCCcEEEcccCCCCCCCC
Q 045449          463 FTS----VLSSTIWNLKDILFIDVSSNFLDGPLSLD-IGNLKVVIGLDFSRNNLSGDIP  516 (823)
Q Consensus       463 l~~----~~p~~~~~l~~L~~LdLs~N~l~g~~p~~-~~~l~~L~~L~ls~N~l~g~ip  516 (823)
                      +++    .+|..+..+++|+.||+++|.++ .+|.. ++.++.|++|++++|+++|.+|
T Consensus       261 l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~  318 (353)
T 2z80_A          261 ITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP  318 (353)
T ss_dssp             CCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             ccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence            877    36788889999999999999998 56655 5889999999999999998776

>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*

Probab=99.97  E-value=4.3e-33  Score=299.06  Aligned_cols=149  Identities=21%  Similarity=0.329  Sum_probs=127.2

Q ss_pred             ccCCccceeeccC------------CeEEEEEEehHhh--HHHHHHHHHHHHHHhhcchhhHHH----------------
Q 045449          628 DRFSENNLIGIGN------------GMEVAVKVFHQQY--ERALKSFEDECEVRKRIRHRNLVK----------------  677 (823)
Q Consensus       628 ~~f~~~~~lg~g~------------~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~----------------  677 (823)
                      ++|...+.||+|+            |+.||||++....  ....+.|.+|++++++++|||||+                
T Consensus        24 e~Y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~yiVmE  103 (350)
T 4b9d_A           24 EKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHPNIVQYRESFEENGSLYIVMD  103 (350)
T ss_dssp             CCEEEEEEC------CEEEEEETTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             cceEEeEEEecCCCeEEEEEEECCCCCEEEEEEEehHHCCHHHHHHHHHHHHHHHHCCCCCCCcEEEEEEECCEEEEEEe
Confidence            6788888999986            6779999996432  445678999999999999999998                


Q ss_pred             --------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCcccc
Q 045449          678 --------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSK  731 (823)
Q Consensus       678 --------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~  731 (823)
                                                ++.|++.+|+|+|+++||||||||+|||++.++.+||+|||+|+......  ..
T Consensus       104 y~~gg~L~~~i~~~~~~~~~e~~~~~~~~qi~~aL~ylH~~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~--~~  181 (350)
T 4b9d_A          104 YCEGGDLFKRINAQKGVLFQEDQILDWFVQICLALKHVHDRKILHRDIKSQNIFLTKDGTVQLGDFGIARVLNSTV--EL  181 (350)
T ss_dssp             CCTTCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHTTCEETTCCGGGEEECTTCCEEECSTTEESCCCHHH--HH
T ss_pred             CCCCCcHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHCCeeeccCCHHHEEECCCCCEEEcccccceeecCCc--cc
Confidence                                      46799999999999999999999999999999999999999999764321  12


Q ss_pred             ccccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCC
Q 045449          732 QTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       732 ~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      ....+||+.|||||++.+..|+.++||||+||++|+|++|+.||.+.
T Consensus       182 ~~~~~GT~~YmAPE~l~~~~y~~~~DiwSlGvilyemltG~~PF~~~  228 (350)
T 4b9d_A          182 ARACIGTPYYLSPEICENKPYNNKSDIWALGCVLYELCTLKHAFEAG  228 (350)
T ss_dssp             HHHHHSCCTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred             ccccCCCccccCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCc
Confidence            34568999999999999999999999999999999999999999764

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}

Probab=99.97  E-value=8.3e-33  Score=296.83  Aligned_cols=151  Identities=25%  Similarity=0.351  Sum_probs=120.7

Q ss_pred             cCCccceeeccC-----------------CeEEEEEEehHhhHHHHHHHHHHHHHHhhcchhhHHH--------------
Q 045449          629 RFSENNLIGIGN-----------------GMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVK--------------  677 (823)
Q Consensus       629 ~f~~~~~lg~g~-----------------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~--------------  677 (823)
                      +|...+.||+|+                 ++.||||+++.......++|.+|++++++++|||||+              
T Consensus        42 d~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~lV  121 (329)
T 4aoj_A           42 DIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRFFGVCTEGRPLLMV  121 (329)
T ss_dssp             GEEEEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEEEE
T ss_pred             HeEEEEEEccCCCcEEEEEEECCcccCCCCeEEEEEEECcCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEE
Confidence            455566778775                 3569999998777777789999999999999999998              


Q ss_pred             -----------------------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEee
Q 045449          678 -----------------------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISD  716 (823)
Q Consensus       678 -----------------------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~D  716 (823)
                                                               ++.|++.+|+|+|+++||||||||+|||++.++.+||+|
T Consensus       122 ~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~iiHRDLKp~NILl~~~~~~Ki~D  201 (329)
T 4aoj_A          122 FEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLAGLHFVHRDLATRNCLVGQGLVVKIGD  201 (329)
T ss_dssp             EECCTTCBHHHHHHTSSCC-----------CCSCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEETTTEEEECC
T ss_pred             EEcCCCCcHHHHHHhcCcccccccccccccCCCCCHHHHHHHHHHHHHHHHHHhcCCeecccccHhhEEECCCCcEEEcc
Confidence                                                     245788899999999999999999999999999999999


Q ss_pred             cccccccCCCCccccccccccCCCcCcccccCCCccccccceehhhhhhccccC-CCCCcCCCc
Q 045449          717 FGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKET-RSMTVGETC  779 (823)
Q Consensus       717 fGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~-~~~~~~~~~  779 (823)
                      ||+|+.....+........+||+.|||||++.+..|+.++|||||||++||+++ |+.||.+..
T Consensus       202 FGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~~sDvwS~Gvvl~Ellt~G~~Pf~~~~  265 (329)
T 4aoj_A          202 FGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQPWYQLS  265 (329)
T ss_dssp             CC----------------CCCCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSSC
T ss_pred             cccceeccCCCcceecCcccccccccChhhhcCCCCCccccccchHHHHHHHHcCCCCCCCCCC
Confidence            999997755444444455789999999999999999999999999999999998 899997753

>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A

Probab=99.97  E-value=1.8e-32  Score=285.33  Aligned_cols=148  Identities=25%  Similarity=0.418  Sum_probs=117.2

Q ss_pred             ccCCccceeeccC------------CeEEEEEEehHhh---HHHHHHHHHHHHHHhhcchhhHHH---------------
Q 045449          628 DRFSENNLIGIGN------------GMEVAVKVFHQQY---ERALKSFEDECEVRKRIRHRNLVK---------------  677 (823)
Q Consensus       628 ~~f~~~~~lg~g~------------~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~---------------  677 (823)
                      ++|...+.||+|+            |+.||||++....   ....+.+.+|++++++++|||||+               
T Consensus        13 g~Y~i~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~ivm   92 (275)
T 3hyh_A           13 GNYQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYDVIKSKDEIIMVI   92 (275)
T ss_dssp             -CCEEEEEEEC---CCEEEEECTTTCCEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             eCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEEeHHHcCCHHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEEEE
Confidence            6899999999986            6779999996432   233467999999999999999998               


Q ss_pred             ------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCcccccc
Q 045449          678 ------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQT  733 (823)
Q Consensus       678 ------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~  733 (823)
                                              +++|++.+|+|+|+++|+||||||+|||++.++.+||+|||+|+......   ...
T Consensus        93 Ey~~g~L~~~l~~~~~l~e~~~~~~~~qi~~al~ylH~~~IiHRDiKP~NILl~~~~~vkl~DFGla~~~~~~~---~~~  169 (275)
T 3hyh_A           93 EYAGNELFDYIVQRDKMSEQEARRFFQQIISAVEYCHRHKIVHRDLKPENLLLDEHLNVKIADFGLSNIMTDGN---FLK  169 (275)
T ss_dssp             ECCCEEHHHHHHHSCSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCTTTEEECTTCCEEECCSSCC-------------
T ss_pred             eCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCcccccCChHHeEECCCCCEEEeecCCCeecCCCC---ccC
Confidence                                    47899999999999999999999999999999999999999998764332   234


Q ss_pred             ccccCCCcCcccccCCCcc-ccccceehhhhhhccccCCCCCcCCC
Q 045449          734 QTLATIGYMAPEYGTKGRV-STRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       734 ~~~gt~~y~aPE~~~~~~~-~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      ..+||+.|||||++.+..| +.++||||+||++|+|++|+.||.+.
T Consensus       170 ~~~GT~~Y~APE~~~~~~y~~~~~DiwSlGvily~lltg~~PF~~~  215 (275)
T 3hyh_A          170 TSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYVMLCRRLPFDDE  215 (275)
T ss_dssp             -----CTTSCHHHHSSSSCCCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             CeeECcccCChhhhcCCCCCCChhhhHHHHHHHHHHHHCCCCCCCC
Confidence            5789999999999998876 57999999999999999999999764

>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}

Probab=99.97  E-value=1.5e-32  Score=301.67  Aligned_cols=149  Identities=25%  Similarity=0.299  Sum_probs=131.1

Q ss_pred             ccCCccceeeccC------------CeEEEEEEehHhhHHHHHHHHHHHHHHhhcchhhHHH------------------
Q 045449          628 DRFSENNLIGIGN------------GMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVK------------------  677 (823)
Q Consensus       628 ~~f~~~~~lg~g~------------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~------------------  677 (823)
                      +.|...+.||+|+            |+.||||++........+.+.+|++++++++|||||+                  
T Consensus       151 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~iVmEy~  230 (423)
T 4fie_A          151 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFL  230 (423)
T ss_dssp             GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESTTCSSGGGHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECC
T ss_pred             HhcEeeeEeccCcCcEEEEEEECCCCCEEEEEEEeccchhHHHHHHHHHHHHHhCCCCCCCceEEEEEECCEEEEEEeCC
Confidence            4588888999996            6779999997554444567899999999999999998                  


Q ss_pred             ---------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccc
Q 045449          678 ---------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTL  736 (823)
Q Consensus       678 ---------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~  736 (823)
                                           ++.|++.+|+|+|+.+||||||||+|||++.++.+||+|||+|+.+.....  .....+
T Consensus       231 ~gG~L~~~i~~~~l~e~~~~~~~~qil~aL~ylH~~~IiHRDiKp~NILl~~~g~vKl~DFGla~~~~~~~~--~~~~~~  308 (423)
T 4fie_A          231 EGGALTDIVTHTRMNEEQIAAVCLAVLQALSVLHAQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVP--RRKSLV  308 (423)
T ss_dssp             TTEEHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSTTTEEECTTCCEEECCCTTCEECCSSCC--CBCCCE
T ss_pred             CCCcHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHCCeecccCCHHHEEEcCCCCEEEecCccceECCCCCc--cccccc
Confidence                                 468999999999999999999999999999999999999999998654332  235678


Q ss_pred             cCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCC
Q 045449          737 ATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       737 gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      ||+.|||||++.+..|+.++||||+||++|+|++|..||.+.
T Consensus       309 GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~  350 (423)
T 4fie_A          309 GTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNE  350 (423)
T ss_dssp             ECTTTCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTS
T ss_pred             cCcCcCCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCc
Confidence            999999999999999999999999999999999999999764

>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}

Probab=99.97  E-value=7.8e-32  Score=283.12  Aligned_cols=143  Identities=28%  Similarity=0.369  Sum_probs=121.6

Q ss_pred             CccceeeccC------------CeEEEEEEehHhh--HHHHHHHHHHHHHHhhcchhhHHH-------------------
Q 045449          631 SENNLIGIGN------------GMEVAVKVFHQQY--ERALKSFEDECEVRKRIRHRNLVK-------------------  677 (823)
Q Consensus       631 ~~~~~lg~g~------------~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~-------------------  677 (823)
                      ...+.||+|+            +..||||++....  ....+.|.+|++++++++|||||+                   
T Consensus        29 ~~~~~iG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~lvm  108 (290)
T 3fpq_A           29 KFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVLVT  108 (290)
T ss_dssp             EEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEEETTEEEEEEEE
T ss_pred             EeeeEEecCcCcEEEEEEECCCCeEEEEEEEchhhCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEeeccCCCcEEEEEE
Confidence            4456799986            5679999996443  445678999999999999999998                   


Q ss_pred             -------------------------HHHHHHHHhhhcCCCC--EEeccCCCCCEEeCC-CCcEEEeecccccccCCCCcc
Q 045449          678 -------------------------IISSSLEYLHFGHSIP--IIHCDLKPSNVLLDE-DMVAHISDFGIAKLLSGEDQL  729 (823)
Q Consensus       678 -------------------------~~~~~l~~L~~~h~~~--ivHrdlk~~NiLl~~-~~~~kl~DfGla~~~~~~~~~  729 (823)
                                               ++.|++.+|+|+|+++  ||||||||+|||++. ++.+||+|||+|+.....   
T Consensus       109 Ey~~gg~L~~~l~~~~~l~~~~~~~~~~qi~~aL~ylH~~~~~IiHRDlKp~NILl~~~~g~vKl~DFGla~~~~~~---  185 (290)
T 3fpq_A          109 ELMTSGTLKTYLKRFKVMKIKVLRSWCRQILKGLQFLHTRTPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKRAS---  185 (290)
T ss_dssp             ECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHTSSSCCCCCCCCGGGEEESSTTSCEEECCTTGGGGCCTT---
T ss_pred             eCCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEecccChhheeEECCCCCEEEEeCcCCEeCCCC---
Confidence                                     3678999999999988  999999999999984 789999999999864322   


Q ss_pred             ccccccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCC
Q 045449          730 SKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       730 ~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                       .....+||+.|||||++.+ .|+.++|||||||++|+|++|+.||.+.
T Consensus       186 -~~~~~~GTp~YmAPE~~~~-~y~~~~DiwSlGvilyelltg~~Pf~~~  232 (290)
T 3fpq_A          186 -FAKAVIGTPEFMAPEMYEE-KYDESVDVYAFGMCMLEMATSEYPYSEC  232 (290)
T ss_dssp             -SBEESCSSCCCCCGGGGGT-CCCTHHHHHHHHHHHHHHHHSSCTTTTC
T ss_pred             -ccCCcccCccccCHHHcCC-CCCcHHHHHHHHHHHHHHHHCCCCCCCC
Confidence             2345689999999998864 6999999999999999999999999754

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.97  E-value=2.1e-30  Score=277.71  Aligned_cols=281  Identities=23%  Similarity=0.225  Sum_probs=193.2

Q ss_pred             hhhccccccccCCccccccCCCCCcEEEccCCcccccCCcccccCCCCccEEEeecccccc--ccCccccCCCCCCeEEe
Q 045449          207 ARLALATNNLVGVVPVTIFNMSALKEISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSG--TIPSSITNSSKLSDLEL  284 (823)
Q Consensus       207 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~lp~~~~~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~L  284 (823)
                      +.++++++.++. +|..+.  ++|++|+|++|.++ .+|..++..+++|++|+|++|+++.  ..|..+..+++|++|+|
T Consensus        10 ~~l~c~~~~l~~-ip~~~~--~~l~~L~L~~n~l~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L   85 (306)
T 2z66_A           10 TEIRCNSKGLTS-VPTGIP--SSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL   85 (306)
T ss_dssp             TEEECCSSCCSS-CCSCCC--TTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEEC
T ss_pred             CEEEcCCCCccc-CCCCCC--CCCCEEECCCCccC-ccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEEC
Confidence            356777777763 344332  57788888888877 6676655567788888888887763  33566667778888888


Q ss_pred             ecccccccCCCccCCCcccCcccccCccccCCCCcccccccccCCCCceEEEeecCCCCccCCccccccccccceEEecC
Q 045449          285 GENLFSGFIPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGILPKSIGNFSLSLETILMAN  364 (823)
Q Consensus       285 s~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~  364 (823)
                      ++|.++. +|..+..+++|++|++++|.+++...    ...+..+++|++|++++|.+++..|..+..+ ++|++|++++
T Consensus        86 s~n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~  159 (306)
T 2z66_A           86 SFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSE----FSVFLSLRNLIYLDISHTHTRVAFNGIFNGL-SSLEVLKMAG  159 (306)
T ss_dssp             CSCSEEE-EEEEEETCTTCCEEECTTSEEESSTT----TTTTTTCTTCCEEECTTSCCEECSTTTTTTC-TTCCEEECTT
T ss_pred             CCCcccc-ChhhcCCCCCCCEEECCCCccccccc----chhhhhccCCCEEECCCCcCCccchhhcccC-cCCCEEECCC
Confidence            8888774 45567777888888888887776532    1356677777777777777777777777766 5777777777


Q ss_pred             Cccee-ccCccccCcccccEEEcccCcCCCCchhcccccCCCCEEEccCCCCCCcchHhhhcCCCCCEEEcccCcCcccc
Q 045449          365 CSISG-NIPQVVGNLSNLLVLELGGNNLTGPIPVTFSQLQTLQAFDLTRNKLAGPITDELCHLARLHSLVLQGNKFSGSI  443 (823)
Q Consensus       365 N~l~~-~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~  443 (823)
                      |.+++ .+|..+..+++|++|+|++|++++..|..|..+++|++|+|++|++++..+..+..+++|+.|+|++|++++..
T Consensus       160 n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  239 (306)
T 2z66_A          160 NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSK  239 (306)
T ss_dssp             CEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCS
T ss_pred             CccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccC
Confidence            77776 56777777777777777777777666777777777777777777777666666777777777777777777777


Q ss_pred             cccccCCC-CCCeEeccCCccccccc--hhhhccCCCcEEeccccccccccCccccC
Q 045449          444 PSCLGNLT-SVRVLYLGLNIFTSVLS--STIWNLKDILFIDVSSNFLDGPLSLDIGN  497 (823)
Q Consensus       444 p~~~~~l~-~L~~L~Ls~N~l~~~~p--~~~~~l~~L~~LdLs~N~l~g~~p~~~~~  497 (823)
                      |..+..++ +|+.|+|++|.+++..+  .....+...+.+.+..+.+.+..|..+..
T Consensus       240 ~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~~~g  296 (306)
T 2z66_A          240 KQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQG  296 (306)
T ss_dssp             SSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGGGTT
T ss_pred             HHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCchhhCC
Confidence            77777763 67777777777766432  11233344444555566666666655544

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.97  E-value=8.5e-30  Score=275.41  Aligned_cols=234  Identities=20%  Similarity=0.248  Sum_probs=177.4

Q ss_pred             CCccEEEeeccccccccCccccCCCCCCeEEeecccccccCCCccCCCcccCcccccCccccCCCCcccccccccCCCCc
Q 045449          253 PNVETLNLGINSFSGTIPSSITNSSKLSDLELGENLFSGFIPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKL  332 (823)
Q Consensus       253 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~l~~L  332 (823)
                      ++++.|+|++|+++ .+|..+.++++|++|+|++|.++ .+|..++.+++|++|+|++|.++.      ++..+.++++|
T Consensus        81 ~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~~------lp~~l~~l~~L  152 (328)
T 4fcg_A           81 PGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLRA------LPASIASLNRL  152 (328)
T ss_dssp             TTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCCC------CCGGGGGCTTC
T ss_pred             cceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCcccc------CcHHHhcCcCC
Confidence            44555555555555 44555555555555555555555 455555555555555555555552      34456667777


Q ss_pred             eEEEeecCCCCccCCccccccccccceEEecCCcceeccCccccCcccccEEEcccCcCCCCchhcccccCCCCEEEccC
Q 045449          333 KVLIVTGNPLDGILPKSIGNFSLSLETILMANCSISGNIPQVVGNLSNLLVLELGGNNLTGPIPVTFSQLQTLQAFDLTR  412 (823)
Q Consensus       333 ~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~  412 (823)
                      ++|++++|++.+.+|..+...                ..+..|.++++|++|+|++|+++ .+|..+..+++|++|+|++
T Consensus       153 ~~L~L~~n~~~~~~p~~~~~~----------------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~  215 (328)
T 4fcg_A          153 RELSIRACPELTELPEPLAST----------------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRN  215 (328)
T ss_dssp             CEEEEEEETTCCCCCSCSEEE----------------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEES
T ss_pred             CEEECCCCCCccccChhHhhc----------------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccC
Confidence            777777777777777665532                22345677888999999999988 7888888899999999999


Q ss_pred             CCCCCcchHhhhcCCCCCEEEcccCcCcccccccccCCCCCCeEeccCCccccccchhhhccCCCcEEeccccccccccC
Q 045449          413 NKLAGPITDELCHLARLHSLVLQGNKFSGSIPSCLGNLTSVRVLYLGLNIFTSVLSSTIWNLKDILFIDVSSNFLDGPLS  492 (823)
Q Consensus       413 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~~p  492 (823)
                      |++++ +|..+..+++|++|+|++|++.+.+|..++.+++|+.|+|++|++.+.+|..+..+++|+.|||++|.+.+.+|
T Consensus       216 N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP  294 (328)
T 4fcg_A          216 SPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLP  294 (328)
T ss_dssp             SCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCC
T ss_pred             CCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhcc
Confidence            99985 55578889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCCCcEEEcccCCCC
Q 045449          493 LDIGNLKVVIGLDFSRNNLS  512 (823)
Q Consensus       493 ~~~~~l~~L~~L~ls~N~l~  512 (823)
                      ..+++++.|+.+++..|.+.
T Consensus       295 ~~l~~L~~L~~l~l~~~~~~  314 (328)
T 4fcg_A          295 SLIAQLPANCIILVPPHLQA  314 (328)
T ss_dssp             GGGGGSCTTCEEECCGGGSC
T ss_pred             HHHhhccCceEEeCCHHHHH
Confidence            99999999999999877665

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*

Probab=99.97  E-value=2.2e-32  Score=292.28  Aligned_cols=147  Identities=23%  Similarity=0.208  Sum_probs=122.8

Q ss_pred             hccCCccceeeccC------------CeEEEEEEehHhhHHHHHHHHHHHHHHhhcchhhHHH-----------------
Q 045449          627 TDRFSENNLIGIGN------------GMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVK-----------------  677 (823)
Q Consensus       627 t~~f~~~~~lg~g~------------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~-----------------  677 (823)
                      .+.|...+.||+|+            |+.||||+++.+.     .+.+|++++++++|||||+                 
T Consensus        57 ~~~~~~~~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~~~-----~~~~E~~il~~l~HpnIV~l~~~~~~~~~~~ivmEy  131 (336)
T 4g3f_A           57 VHWMTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEV-----FRVEELVACAGLSSPRIVPLYGAVREGPWVNIFMEL  131 (336)
T ss_dssp             TTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTT-----CCTHHHHTTTTCCCTTBCCEEEEEEETTEEEEEECC
T ss_pred             hhheEeCcEeccCCCeEEEEEEECCCCCEEEEEEECHHH-----hHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEec
Confidence            35677778899986            6779999997542     2357999999999999998                 


Q ss_pred             -----------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCC-cEEEeecccccccCCCCcc---c
Q 045449          678 -----------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDM-VAHISDFGIAKLLSGEDQL---S  730 (823)
Q Consensus       678 -----------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~-~~kl~DfGla~~~~~~~~~---~  730 (823)
                                             ++.|++.+|+|+|+++||||||||+|||++.++ ++||+|||+|+.+......   .
T Consensus       132 ~~gg~L~~~l~~~~~l~e~~~~~~~~qi~~aL~ylH~~~IiHRDlKp~NILl~~~g~~vKl~DFGla~~~~~~~~~~~~~  211 (336)
T 4g3f_A          132 LEGGSLGQLIKQMGCLPEDRALYYLGQALEGLEYLHTRRILHGDVKADNVLLSSDGSRAALCDFGHALCLQPDGLGKSLL  211 (336)
T ss_dssp             CTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHTTTEECSCCCGGGEEECTTSCCEEECCCTTCEEC----------
T ss_pred             cCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCceecccCHHHEEEeCCCCEEEEeeCCCCeEccCCCccccee
Confidence                                   468999999999999999999999999999887 6999999999986543221   1


Q ss_pred             cccccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCC
Q 045449          731 KQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       731 ~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      .....+||+.|||||++.+..|+.++||||+||++|+|++|..||.+.
T Consensus       212 ~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~Pf~~~  259 (336)
T 4g3f_A          212 TGDYIPGTETHMAPEVVMGKPCDAKVDIWSSCCMMLHMLNGCHPWTQY  259 (336)
T ss_dssp             --CCCCCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSTTT
T ss_pred             cCCccccCccccCHHHHCCCCCCcHHHHHHHHHHHHHHHHCcCCCCCC
Confidence            123467999999999999999999999999999999999999999764

>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A

Probab=99.97  E-value=2.2e-32  Score=290.75  Aligned_cols=178  Identities=20%  Similarity=0.208  Sum_probs=132.9

Q ss_pred             eEEEEEEehHhh-HHHHHHHHHHHHHHhhcchhhHHH-------------------------------------------
Q 045449          642 MEVAVKVFHQQY-ERALKSFEDECEVRKRIRHRNLVK-------------------------------------------  677 (823)
Q Consensus       642 ~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~-------------------------------------------  677 (823)
                      +.||||+++... ....++|.+|+.++++++|||||+                                           
T Consensus        57 ~~VAvK~l~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~~~~~~lV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~  136 (308)
T 4gt4_A           57 QAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNVVCLLGVVTKDQPLSMIFSYCSHGDLHEFLVMRSPHSDVGSTDDDR  136 (308)
T ss_dssp             EEEEEEECCC-CCC-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEECCSSCBHHHHHHTTCSSCCCC-----C
T ss_pred             eEEEEEEECcccChHHHHHHHHHHHHHHhCCCCCCCCcceEEEECCEEEEEEEcCCCCcHHHHHHhhCcccccccccccc
Confidence            469999997543 234578999999999999999998                                           


Q ss_pred             -------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcc
Q 045449          678 -------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAP  744 (823)
Q Consensus       678 -------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aP  744 (823)
                                   ++.|++.+|+|+|+.+||||||||+|||+++++.+||+|||+|+.....+........+||+.||||
T Consensus       137 ~~~~~l~~~~~~~i~~qia~gl~yLH~~~iiHRDLK~~NILl~~~~~~Ki~DFGlar~~~~~~~~~~~~~~~gt~~ymAP  216 (308)
T 4gt4_A          137 TVKSALEPPDFVHLVAQIAAGMEYLSSHHVVHKDLATRNVLVYDKLNVKISDLGLFREVYAADYYKLLGNSLLPIRWMAP  216 (308)
T ss_dssp             CEECCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGGCEEECCSCCBCGGGGGGCBCSSSSSCBCGGGCCH
T ss_pred             ccccCCCHHHHHHHHHHHHHHHHHHHhCCCCCCCccccceEECCCCCEEECCcccceeccCCCceeEecccccCCcccCH
Confidence                         2457888999999999999999999999999999999999999977554444444567899999999


Q ss_pred             cccCCCccccccceehhhhhhccccC-CCCCcCCCcccccccccccCCcccccccCCCcccccccccccccccccCC
Q 045449          745 EYGTKGRVSTRGDVCSFGIISGGKET-RSMTVGETCTPVRESKYEVHPATTTIMEHPLPRVGEVMDVDRGKARIQGK  820 (823)
Q Consensus       745 E~~~~~~~~~~~Dv~S~Gvv~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  820 (823)
                      |++.++.|+.++|||||||++||+++ |..||.+............ ....+.++...+.+.+++..+....+-+||
T Consensus       217 E~l~~~~~s~ksDVwSfGvvl~El~t~g~~Pf~~~~~~~~~~~i~~-~~~~~~p~~~~~~~~~li~~C~~~dP~~RP  292 (308)
T 4gt4_A          217 EAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYSNQDVVEMIRN-RQVLPCPDDCPAWVYALMIECWNEFPSRRP  292 (308)
T ss_dssp             HHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTCCHHHHHHHHHT-TCCCCCCTTCCHHHHHHHHHHTCSSGGGSC
T ss_pred             HHHhCCCCCccchhhhHHHHHHHHHhCCCCCCCCCCHHHHHHHHHc-CCCCCCcccchHHHHHHHHHHcCCChhHCc
Confidence            99999999999999999999999998 7889977532211111100 011112334445555555555555444444

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.97  E-value=1.5e-30  Score=278.91  Aligned_cols=250  Identities=19%  Similarity=0.228  Sum_probs=143.9

Q ss_pred             cEEEccCCcccccCCcccccCCCCccEEEeeccccccccCccccCCCCCCeEEeeccccccc--CCCccCCCcccCcccc
Q 045449          231 KEISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSITNSSKLSDLELGENLFSGF--IPNTIGNLRNLEFGNI  308 (823)
Q Consensus       231 ~~L~Ls~N~l~g~lp~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~--~p~~~~~l~~L~~L~L  308 (823)
                      +.++++++.++ .+|..+   .++|++|+|++|+++...+..|.++++|++|+|++|+++..  .+..+..+++|++|++
T Consensus        10 ~~l~c~~~~l~-~ip~~~---~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L   85 (306)
T 2z66_A           10 TEIRCNSKGLT-SVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL   85 (306)
T ss_dssp             TEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEEC
T ss_pred             CEEEcCCCCcc-cCCCCC---CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEEC
Confidence            46777777777 677654   34677778877777754444567777777777777777632  2445555666666666


Q ss_pred             cCccccCCCCcccccccccCCCCceEEEeecCCCCccCCccccccccccceEEecCCcceeccCccccCcccccEEEccc
Q 045449          309 ADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGILPKSIGNFSLSLETILMANCSISGNIPQVVGNLSNLLVLELGG  388 (823)
Q Consensus       309 ~~N~l~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~  388 (823)
                      ++|.++.      ++..+..+++|+.|++++|.+++..+                        ...+..+++|++|++++
T Consensus        86 s~n~i~~------l~~~~~~l~~L~~L~l~~n~l~~~~~------------------------~~~~~~l~~L~~L~l~~  135 (306)
T 2z66_A           86 SFNGVIT------MSSNFLGLEQLEHLDFQHSNLKQMSE------------------------FSVFLSLRNLIYLDISH  135 (306)
T ss_dssp             CSCSEEE------EEEEEETCTTCCEEECTTSEEESSTT------------------------TTTTTTCTTCCEEECTT
T ss_pred             CCCcccc------ChhhcCCCCCCCEEECCCCccccccc------------------------chhhhhccCCCEEECCC
Confidence            6666554      23334455555555555555544332                        03444555555555555


Q ss_pred             CcCCCCchhcccccCCCCEEEccCCCCCC-cchHhhhcCCCCCEEEcccCcCcccccccccCCCCCCeEeccCCcccccc
Q 045449          389 NNLTGPIPVTFSQLQTLQAFDLTRNKLAG-PITDELCHLARLHSLVLQGNKFSGSIPSCLGNLTSVRVLYLGLNIFTSVL  467 (823)
Q Consensus       389 N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~  467 (823)
                      |++++..+..+..+++|++|+|++|.+++ .+|..+..+++|++|+|++|.+++..|..+..+++|+.|+|++|.+++..
T Consensus       136 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  215 (306)
T 2z66_A          136 THTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLD  215 (306)
T ss_dssp             SCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCC
T ss_pred             CcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccC
Confidence            55554445555555555555555555544 34445555555555555555555555555555555555555555555555


Q ss_pred             chhhhccCCCcEEeccccccccccCccccCC-CCCcEEEcccCCCCCC
Q 045449          468 SSTIWNLKDILFIDVSSNFLDGPLSLDIGNL-KVVIGLDFSRNNLSGD  514 (823)
Q Consensus       468 p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l-~~L~~L~ls~N~l~g~  514 (823)
                      +..+..+++|+.||+++|.+++..|..+..+ +.|++|++++|++++.
T Consensus       216 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~  263 (306)
T 2z66_A          216 TFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT  263 (306)
T ss_dssp             SGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECS
T ss_pred             hhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecc
Confidence            5555555555666666666655555555555 2566666666666544

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.97  E-value=2.4e-30  Score=283.26  Aligned_cols=280  Identities=18%  Similarity=0.177  Sum_probs=236.0

Q ss_pred             chhhhhccccccccCCccccccCCCCCcEEEccCCcccccCCcccccCCCCccEEEeeccccccccCccccCCCCCCeEE
Q 045449          204 PYLARLALATNNLVGVVPVTIFNMSALKEISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSITNSSKLSDLE  283 (823)
Q Consensus       204 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~lp~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  283 (823)
                      +.....++++|+++. +|..+.  ++|++|++++|.+++ +|...+..+++|++|+|++|++++..|..|.++++|++|+
T Consensus        31 ~~~~~c~~~~~~l~~-iP~~~~--~~L~~L~l~~n~i~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  106 (353)
T 2z80_A           31 DRNGICKGSSGSLNS-IPSGLT--EAVKSLDLSNNRITY-ISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLD  106 (353)
T ss_dssp             CTTSEEECCSTTCSS-CCTTCC--TTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred             CCCeEeeCCCCCccc-cccccc--ccCcEEECCCCcCcc-cCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEE
Confidence            334457888999984 565554  489999999999984 5554445599999999999999988889999999999999


Q ss_pred             eecccccccCCCccCCCcccCcccccCccccCCCCcccccccccCCCCceEEEeecC-CCCccCCccccccccccceEEe
Q 045449          284 LGENLFSGFIPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGN-PLDGILPKSIGNFSLSLETILM  362 (823)
Q Consensus       284 Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~l~~L~~L~Ls~N-~l~~~~p~~~~~~~~~L~~L~L  362 (823)
                      |++|++++..+..|+.+++|++|++++|+++..+.    ...+.++++|+.|++++| .+.+..|..+..+ ++|++|++
T Consensus       107 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~----~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l-~~L~~L~l  181 (353)
T 2z80_A          107 LSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGE----TSLFSHLTKLQILRVGNMDTFTKIQRKDFAGL-TFLEELEI  181 (353)
T ss_dssp             CCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCS----SCSCTTCTTCCEEEEEESSSCCEECTTTTTTC-CEEEEEEE
T ss_pred             CCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCc----hhhhccCCCCcEEECCCCccccccCHHHccCC-CCCCEEEC
Confidence            99999998777779999999999999999997532    136889999999999999 5777778888888 79999999


Q ss_pred             cCCcceeccCccccCcccccEEEcccCcCCCCchhcccccCCCCEEEccCCCCCCcchHhhh---cCCCCCEEEcccCcC
Q 045449          363 ANCSISGNIPQVVGNLSNLLVLELGGNNLTGPIPVTFSQLQTLQAFDLTRNKLAGPITDELC---HLARLHSLVLQGNKF  439 (823)
Q Consensus       363 ~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~---~l~~L~~L~Ls~N~l  439 (823)
                      ++|.+++..|..+..+++|++|++++|+++...+..+..+++|++|++++|++++..+..+.   ....++.++|++|.+
T Consensus       182 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l  261 (353)
T 2z80_A          182 DASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKI  261 (353)
T ss_dssp             EETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBC
T ss_pred             CCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccc
Confidence            99999999999999999999999999999744444456789999999999999987655443   467789999999999


Q ss_pred             cc----cccccccCCCCCCeEeccCCccccccchhhhccCCCcEEeccccccccccC
Q 045449          440 SG----SIPSCLGNLTSVRVLYLGLNIFTSVLSSTIWNLKDILFIDVSSNFLDGPLS  492 (823)
Q Consensus       440 ~g----~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~~p  492 (823)
                      ++    .+|..+..+++|+.|+|++|+++...+..+..+++|++|++++|.+++..|
T Consensus       262 ~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~  318 (353)
T 2z80_A          262 TDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  318 (353)
T ss_dssp             CHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             cCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence            87    478889999999999999999996544446899999999999999998765

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.96  E-value=1.3e-29  Score=294.76  Aligned_cols=122  Identities=23%  Similarity=0.260  Sum_probs=74.9

Q ss_pred             CCccccccccCCCCCCccceeeeeC------CCCCcEEEEEcCCCCCccccCcccCCCCCCcEEEccCCCCCCCCCCCCC
Q 045449           24 DHTNLFARNWTSSTSVCIWIGITCD------VNSHRVIGLNISSFNLQGTITPQLGNLSSLQTLDLSHNKLSGNIPSSIF   97 (823)
Q Consensus        24 ~~~~~~~~~W~~~~~~c~w~gv~c~------~~~~~v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~N~l~g~~p~~~~   97 (823)
                      |+...++ +|....+||.|+|..|.      .....++.|++++++++ .+|..+.  ++|++|+|++|+|+ .+|.   
T Consensus         7 ~~~~~w~-~W~~~~~~~~~~~r~~~~~~~~~c~~~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---   78 (622)
T 3g06_A            7 EYDAVWS-AWRRAAPAEESRGRAAVVQKMRACLNNGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---   78 (622)
T ss_dssp             ---CHHH-HHHHTCCGGGHHHHHHHHHHHHHHHHHCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---
T ss_pred             HHHHHHH-HHHhcCCcchhccccccCcccccccCCCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---
Confidence            3444555 89888899999775331      11124677777777777 5666554  67777777777777 4444   


Q ss_pred             CCCCCCEEECCCCcCcCCCchhhhcCCCCcEEecccccccCccCccccCCCCCCccccccceeeeccceee
Q 045449           98 NMHTLKLLDFSDNQLFGSLSSFIFNMSSMTTIDLSINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLS  168 (823)
Q Consensus        98 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~p~~~~~l~~L~~L~Ls~N~l~  168 (823)
                      .+++|++|+|++|+|++ +|.   .+++|++|+|++|++++ +|.          .+++|++|+|++|+++
T Consensus        79 ~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-l~~----------~l~~L~~L~L~~N~l~  134 (622)
T 3g06_A           79 LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIFSNPLTH-LPA----------LPSGLCKLWIFGNQLT  134 (622)
T ss_dssp             CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEECSCCCCC-CCC----------CCTTCCEEECCSSCCS
T ss_pred             cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECcCCcCCC-CCC----------CCCCcCEEECCCCCCC
Confidence            45677777777777663 333   45666666666666653 221          2355666666666655

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*

Probab=99.96  E-value=7.8e-32  Score=285.74  Aligned_cols=147  Identities=26%  Similarity=0.370  Sum_probs=117.0

Q ss_pred             ccCCccceeeccC------------CeEEEEEEehHh-hHHHHHHHHHHHHHHhhcchhhHHH-----------------
Q 045449          628 DRFSENNLIGIGN------------GMEVAVKVFHQQ-YERALKSFEDECEVRKRIRHRNLVK-----------------  677 (823)
Q Consensus       628 ~~f~~~~~lg~g~------------~~~vavK~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~-----------------  677 (823)
                      ++|+..+.||+|+            |+.||||+++.. .+...+.|.+|++++++++|||||+                 
T Consensus         5 ~dy~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~~   84 (299)
T 4g31_A            5 TDFEPIQCLGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNAWLEKNTTEKLQPS   84 (299)
T ss_dssp             HHEEEEEEEEECC--EEEEEEETTTCCEEEEEEEEECSSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEEC--------
T ss_pred             hhCEEeeEEecCCCeEEEEEEECCCCCEEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEecCcccccccc
Confidence            4578888999986            667999998643 2445578999999999999999986                 


Q ss_pred             --------------------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeeccc
Q 045449          678 --------------------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGI  719 (823)
Q Consensus       678 --------------------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGl  719 (823)
                                                            ++.|++++|+|+|+++|+||||||+|||++.++.+||+|||+
T Consensus        85 ~~~~~l~ivmE~~~gg~L~~~l~~~~~~~~~~~~~~~~i~~qi~~al~ylH~~~IiHRDlKp~NILl~~~~~vKl~DFGl  164 (299)
T 4g31_A           85 SPKVYLYIQMQLCRKENLKDWMNGRCTIEERERSVCLHIFLQIAEAVEFLHSKGLMHRDLKPSNIFFTMDDVVKVGDFGL  164 (299)
T ss_dssp             --CEEEEEEEECCCSCCHHHHHHTCCSGGGSCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTCCEEECCCCC
T ss_pred             CCCcEEEEEEecCCCCcHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHCcCccccCcHHHeEECCCCcEEEccCcc
Confidence                                                  356899999999999999999999999999999999999999


Q ss_pred             ccccCCCCcc----------ccccccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCC
Q 045449          720 AKLLSGEDQL----------SKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGE  777 (823)
Q Consensus       720 a~~~~~~~~~----------~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~  777 (823)
                      |+........          ...+..+||+.|||||++.+..|+.++||||+||++|||++   ||..
T Consensus       165 a~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyell~---Pf~~  229 (299)
T 4g31_A          165 VTAMDQDEEEQTVLTPMPAYARHTGQVGTKLYMSPEQIHGNSYSHKVDIFSLGLILFELLY---PFST  229 (299)
T ss_dssp             C--------------------------CCCTTSCHHHHTTCCCCTHHHHHHHHHHHHHHHS---CCSS
T ss_pred             ceecCCCccccccccccccccccCCcccCccccCHHHHcCCCCCCHHHHHHHHHHHHHHcc---CCCC
Confidence            9986543221          12234689999999999999999999999999999999986   6654

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.96  E-value=1.4e-29  Score=268.50  Aligned_cols=254  Identities=20%  Similarity=0.200  Sum_probs=138.9

Q ss_pred             cEEEccCCcccccCCcccccCCCCccEEEeeccccccccCccccCCCCCCeEEeecccccccCCCccCCCcccCcccccC
Q 045449          231 KEISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSITNSSKLSDLELGENLFSGFIPNTIGNLRNLEFGNIAD  310 (823)
Q Consensus       231 ~~L~Ls~N~l~g~lp~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~  310 (823)
                      +.++.+++.++ .+|..+   .++|++|+|++|++++..+..|.++++|++|+|++|.+++..|..|..+++|++|++++
T Consensus        14 ~~~~c~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   89 (285)
T 1ozn_A           14 VTTSCPQQGLQ-AVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD   89 (285)
T ss_dssp             CEEECCSSCCS-SCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             eEEEcCcCCcc-cCCcCC---CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence            56677777776 566543   35677777777777766666777777777777777777776676677666666666666


Q ss_pred             cc-ccCCCCcccccccccCCCCceEEEeecCCCCccCCccccccccccceEEecCCcceeccCccccCcccccEEEcccC
Q 045449          311 NY-LTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGILPKSIGNFSLSLETILMANCSISGNIPQVVGNLSNLLVLELGGN  389 (823)
Q Consensus       311 N~-l~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N  389 (823)
                      |. ++..     .+..+..+++|++|++++|.+++..|.                         .|.++++|++|++++|
T Consensus        90 n~~l~~~-----~~~~~~~l~~L~~L~l~~n~l~~~~~~-------------------------~~~~l~~L~~L~l~~n  139 (285)
T 1ozn_A           90 NAQLRSV-----DPATFHGLGRLHTLHLDRCGLQELGPG-------------------------LFRGLAALQYLYLQDN  139 (285)
T ss_dssp             CTTCCCC-----CTTTTTTCTTCCEEECTTSCCCCCCTT-------------------------TTTTCTTCCEEECCSS
T ss_pred             CCCcccc-----CHHHhcCCcCCCEEECCCCcCCEECHh-------------------------HhhCCcCCCEEECCCC
Confidence            65 5544     223444555555555555555444444                         4444444445555555


Q ss_pred             cCCCCchhcccccCCCCEEEccCCCCCCcchHhhhcCCCCCEEEcccCcCcccccccccCCCCCCeEeccCCccccccch
Q 045449          390 NLTGPIPVTFSQLQTLQAFDLTRNKLAGPITDELCHLARLHSLVLQGNKFSGSIPSCLGNLTSVRVLYLGLNIFTSVLSS  469 (823)
Q Consensus       390 ~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~  469 (823)
                      ++++..+..|..+++|++|+|++|++++..+..|..+++|+.|+|++|.+++..|..|..+++|+.|+|++|.+++..+.
T Consensus       140 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  219 (285)
T 1ozn_A          140 ALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTE  219 (285)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHH
T ss_pred             cccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHH
Confidence            55444444444455555555555555544333445555555555555555555555555555555555555555554444


Q ss_pred             hhhccCCCcEEeccccccccccCccccCCCCCcEEEcccCCCCCCCCCcc
Q 045449          470 TIWNLKDILFIDVSSNFLDGPLSLDIGNLKVVIGLDFSRNNLSGDIPITI  519 (823)
Q Consensus       470 ~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~ip~~~  519 (823)
                      .+..+++|+.|++++|.+++..+.. ..+..++.++.+.|.+.+..|..+
T Consensus       220 ~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~~l  268 (285)
T 1ozn_A          220 ALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQRL  268 (285)
T ss_dssp             HHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESGGG
T ss_pred             HcccCcccCEEeccCCCccCCCCcH-HHHHHHHhcccccCccccCCchHh
Confidence            4555555555555555555433321 011223333444555555444443

>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*

Probab=99.96  E-value=1.8e-31  Score=288.75  Aligned_cols=154  Identities=25%  Similarity=0.301  Sum_probs=131.0

Q ss_pred             HhccCCccceeeccC-----------------CeEEEEEEehHhh-HHHHHHHHHHHHHHhhcch-hhHHH---------
Q 045449          626 ATDRFSENNLIGIGN-----------------GMEVAVKVFHQQY-ERALKSFEDECEVRKRIRH-RNLVK---------  677 (823)
Q Consensus       626 at~~f~~~~~lg~g~-----------------~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h-~niv~---------  677 (823)
                      ..++|...+.||+|+                 ++.||||++.... ....++|.+|++++.++.| ||||+         
T Consensus        62 ~~~~~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~~~~~~~~~~~E~~il~~l~hhpnIV~l~g~~~~~~  141 (353)
T 4ase_A           62 PRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPG  141 (353)
T ss_dssp             CGGGEEEEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECCTT
T ss_pred             cHHHeEEeeEEecCCCeEEEEEEEcCCCcccCCeEEEEEEEccccChHHHHHHHHHHHHHHHcCCCCcEEEEEEEEEecC
Confidence            346788889999997                 2459999997543 3445789999999999965 99998         


Q ss_pred             ------------------------------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCC
Q 045449          678 ------------------------------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDED  709 (823)
Q Consensus       678 ------------------------------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~  709 (823)
                                                                      ++.|++.+|+|+|+++||||||||+|||++++
T Consensus       142 ~~~~iV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~yLH~~~iiHRDLK~~NILl~~~  221 (353)
T 4ase_A          142 GPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNILLSEK  221 (353)
T ss_dssp             SCCEEEEECCTTEEHHHHHHHTGGGBCCC-------CTTCBCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGG
T ss_pred             CEEEEEEEcCCCCCHHHHHHhcccccccccccchhhccccCCHHHHHHHHHHHHHHHHhHhhCCeecCccCccceeeCCC
Confidence                                                            13478899999999999999999999999999


Q ss_pred             CcEEEeecccccccCCCCccccccccccCCCcCcccccCCCccccccceehhhhhhccccC-CCCCcCCCc
Q 045449          710 MVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKET-RSMTVGETC  779 (823)
Q Consensus       710 ~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~-~~~~~~~~~  779 (823)
                      +.+||+|||+|+..............+||+.|||||++.++.|+.++|||||||++||+++ |+.||.+..
T Consensus       222 ~~vKi~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~y~~ksDVwS~Gv~l~El~t~G~~Pf~~~~  292 (353)
T 4ase_A          222 NVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVK  292 (353)
T ss_dssp             GCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCC
T ss_pred             CCEEECcchhhhhcccCCCceeeccccccccccCHHHHhcCCCCCcccEeehHHHHHHHHhCCCCCCCCCC
Confidence            9999999999998765544444556789999999999999999999999999999999998 899997653

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.96  E-value=2.3e-30  Score=295.08  Aligned_cols=235  Identities=19%  Similarity=0.158  Sum_probs=142.9

Q ss_pred             CCCccEEEeeccccccccCccccCCCCCCeEEeecccccccCCCccCCCcccCcccccCccccCCCCcccccccccCCCC
Q 045449          252 LPNVETLNLGINSFSGTIPSSITNSSKLSDLELGENLFSGFIPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKK  331 (823)
Q Consensus       252 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~l~~  331 (823)
                      +++|++|+|++|.+++..|..|..+++|++|+|++|.+++.+|  |..+++|++|+|++|.+++.+          ..++
T Consensus        33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~----------~~~~  100 (487)
T 3oja_A           33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL----------VGPS  100 (487)
T ss_dssp             GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE----------ECTT
T ss_pred             CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC----------CCCC
Confidence            4478888888888888777888888888888888888887665  778888888888888877642          1256


Q ss_pred             ceEEEeecCCCCccCCccccccccccceEEecCCcceeccCccccCcccccEEEcccCcCCCCchhccc-ccCCCCEEEc
Q 045449          332 LKVLIVTGNPLDGILPKSIGNFSLSLETILMANCSISGNIPQVVGNLSNLLVLELGGNNLTGPIPVTFS-QLQTLQAFDL  410 (823)
Q Consensus       332 L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~-~l~~L~~L~L  410 (823)
                      |+.|++++|.+++..+..   + ++|++|+|++|.+++..|..++.+++|++|+|++|++++.+|..+. .+++|++|+|
T Consensus       101 L~~L~L~~N~l~~~~~~~---l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~L  176 (487)
T 3oja_A          101 IETLHAANNNISRVSCSR---G-QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL  176 (487)
T ss_dssp             CCEEECCSSCCCCEEECC---C-SSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEEC
T ss_pred             cCEEECcCCcCCCCCccc---c-CCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEec
Confidence            677777777776654432   2 3456666666666655555555556666666666666555555543 4555555555


Q ss_pred             cCCCCCCcchHhhhcCCCCCEEEcccCcCcccccccccCCCCCCeEeccCCccccccchhhhccCCCcEEeccccccc-c
Q 045449          411 TRNKLAGPITDELCHLARLHSLVLQGNKFSGSIPSCLGNLTSVRVLYLGLNIFTSVLSSTIWNLKDILFIDVSSNFLD-G  489 (823)
Q Consensus       411 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~-g  489 (823)
                      ++|.|++..+  +..+++|+.|+|++|.|++..| .+..+++|+.|+|++|.+++ +|..+..+++|+.|++++|.++ +
T Consensus       177 s~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~  252 (487)
T 3oja_A          177 QYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCG  252 (487)
T ss_dssp             TTSCCCEEEC--CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHH
T ss_pred             CCCccccccc--cccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCc
Confidence            5555554422  2235555555555555554322 35555555555555555554 3444555555555555555555 4


Q ss_pred             ccCccccCCCCCcEEEc
Q 045449          490 PLSLDIGNLKVVIGLDF  506 (823)
Q Consensus       490 ~~p~~~~~l~~L~~L~l  506 (823)
                      .+|..+..++.|+.+++
T Consensus       253 ~~~~~~~~l~~L~~l~~  269 (487)
T 3oja_A          253 TLRDFFSKNQRVQTVAK  269 (487)
T ss_dssp             HHHHHHTTCHHHHHHHH
T ss_pred             chHHHHHhCCCCcEEec
Confidence            44444444444444444

>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*

Probab=99.96  E-value=1.7e-32  Score=289.58  Aligned_cols=149  Identities=28%  Similarity=0.352  Sum_probs=120.1

Q ss_pred             ccCCccceeeccC---------------CeEEEEEEehHhh--HHHHHHHHHHHHHHhhcchhhHHH-------------
Q 045449          628 DRFSENNLIGIGN---------------GMEVAVKVFHQQY--ERALKSFEDECEVRKRIRHRNLVK-------------  677 (823)
Q Consensus       628 ~~f~~~~~lg~g~---------------~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~-------------  677 (823)
                      ++|+..+.||+|+               ++.||||+++...  .....++.+|++++++++|||||+             
T Consensus        24 ~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~i  103 (304)
T 3ubd_A           24 SQFELLKVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKVRDRVRTKMERDILVEVNHPFIVKLHYAFQTEGKLYL  103 (304)
T ss_dssp             GGEEEEEEEECGGGCEEEEEEECSSTTTTCEEEEEEEESEEEEEEECC------CCCCCCCCTTEECEEEEEEETTEEEE
T ss_pred             cccEEEEEEecCCCeEEEEEEEccCCCCCEEEEEEEEehHHcChHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEE
Confidence            5688888888885               4569999986432  112246889999999999999998             


Q ss_pred             ---------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccc
Q 045449          678 ---------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLS  730 (823)
Q Consensus       678 ---------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~  730 (823)
                                                 +++|++.+|+|+|+++|+||||||+|||++.++.+||+|||+|+.......  
T Consensus       104 vmEy~~gg~L~~~l~~~~~l~e~~~~~~~~qi~~aL~ylH~~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~~--  181 (304)
T 3ubd_A          104 ILDFLRGGDLFTRLSKEVMFTEEDVKFYLAELALALDHLHSLGIIYRDLKPENILLDEEGHIKLTDFGLSKESIDHEK--  181 (304)
T ss_dssp             EECCCTTCEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSSCCGGGEEECTTSCEEEESSEEEEC-----C--
T ss_pred             EEEcCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCCcCCCCCHHHeEEcCCCCEEecccccceeccCCCc--
Confidence                                       478999999999999999999999999999999999999999987543322  


Q ss_pred             cccccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCC
Q 045449          731 KQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       731 ~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      .....+||+.|||||++.+..|+.++||||+||++|+|++|..||.+.
T Consensus       182 ~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~PF~~~  229 (304)
T 3ubd_A          182 KAYSFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGTLPFQGK  229 (304)
T ss_dssp             CCCSCCCCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             cccccccCcccCCHHHhccCCCCCCCcccchHHHHHHHHhCCCCCCCc
Confidence            234578999999999999999999999999999999999999999764

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.96  E-value=1.4e-30  Score=279.89  Aligned_cols=250  Identities=17%  Similarity=0.158  Sum_probs=177.6

Q ss_pred             ccCCCCCcEEEccCCcccccCCcccccCCCCccEEEeecccc-ccccCcccc-------CCCCCCeEEeecccccccCCC
Q 045449          224 IFNMSALKEISLLNNSLSGSLPSRIDLSLPNVETLNLGINSF-SGTIPSSIT-------NSSKLSDLELGENLFSGFIPN  295 (823)
Q Consensus       224 ~~~l~~L~~L~Ls~N~l~g~lp~~~~~~l~~L~~L~Ls~N~l-~~~~p~~~~-------~l~~L~~L~Ls~N~l~~~~p~  295 (823)
                      +...++|++|++++|.+  .+|..+..   .|+.|+|++|++ .+.+|..+.       ++++|++|+|++|++++.+|.
T Consensus        39 ~~~~~~L~~l~l~~n~l--~~p~~~~~---~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  113 (312)
T 1wwl_A           39 YGGGRSLEYLLKRVDTE--ADLGQFTD---IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPP  113 (312)
T ss_dssp             EEEEEECTTHHHHCCTT--CCCHHHHH---HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCC
T ss_pred             EccCCCceeEeeccccc--ccHHHHHH---HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHH
Confidence            34455667777777776  56665544   266667777776 344555444       566677777777776666665


Q ss_pred             cc--CCCcccCcccccCccccCCCCcccccccccCCCCceEEEeecCCCCccCCcccccc----ccccceEEecCCccee
Q 045449          296 TI--GNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGILPKSIGNF----SLSLETILMANCSISG  369 (823)
Q Consensus       296 ~~--~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~----~~~L~~L~L~~N~l~~  369 (823)
                      .+  ..+++|                             ++|+|++|.+++. |..+..+    .++|++|++++|++++
T Consensus       114 ~~~~~~l~~L-----------------------------~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~  163 (312)
T 1wwl_A          114 PLLEATGPDL-----------------------------NILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLN  163 (312)
T ss_dssp             CSSSCCSCCC-----------------------------SEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCC
T ss_pred             HHHHhcCCCc-----------------------------cEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCcc
Confidence            44  444444                             4555555555544 4444443    1467777777777777


Q ss_pred             ccCccccCcccccEEEcccCcCCCC--chhcc--cccCCCCEEEccCCCCCCc--ch-HhhhcCCCCCEEEcccCcCccc
Q 045449          370 NIPQVVGNLSNLLVLELGGNNLTGP--IPVTF--SQLQTLQAFDLTRNKLAGP--IT-DELCHLARLHSLVLQGNKFSGS  442 (823)
Q Consensus       370 ~~p~~~~~l~~L~~L~Ls~N~l~g~--~p~~~--~~l~~L~~L~Ls~N~l~~~--~p-~~~~~l~~L~~L~Ls~N~l~g~  442 (823)
                      ..|..|+.+++|++|+|++|++.|.  .|..+  ..+++|++|+|++|++++.  ++ ..+.++++|+.|+|++|++++.
T Consensus       164 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~  243 (312)
T 1wwl_A          164 FSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDA  243 (312)
T ss_dssp             CCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSS
T ss_pred             chHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcc
Confidence            7777888888888888888888765  33444  7888888999999888842  22 3356778899999999999887


Q ss_pred             cc-ccccCCCCCCeEeccCCccccccchhhhccCCCcEEeccccccccccCccccCCCCCcEEEcccCCCCC
Q 045449          443 IP-SCLGNLTSVRVLYLGLNIFTSVLSSTIWNLKDILFIDVSSNFLDGPLSLDIGNLKVVIGLDFSRNNLSG  513 (823)
Q Consensus       443 ~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g  513 (823)
                      +| ..+..+++|++|+|++|+++ .+|..+.  ++|++|||++|++++. |. +..++.|+.|++++|++++
T Consensus       244 ~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          244 AGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             CCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred             cchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence            75 45667888999999999998 5677666  8899999999999877 55 8889999999999999885

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.96  E-value=1.3e-28  Score=278.83  Aligned_cols=249  Identities=20%  Similarity=0.244  Sum_probs=167.5

Q ss_pred             CCcEEEccCCcccccCCcccccCCCCccEEEeeccccccccCccccCCCCCCeEEeecccccccCCCccCCCcccCcccc
Q 045449          229 ALKEISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSITNSSKLSDLELGENLFSGFIPNTIGNLRNLEFGNI  308 (823)
Q Consensus       229 ~L~~L~Ls~N~l~g~lp~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  308 (823)
                      ....++.+++.++ .+|..+.   ++|++|+|++|+|++..|..|.++++|++|+|++|++++..|..|.++++|++|+|
T Consensus        55 ~~~~v~c~~~~l~-~iP~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L  130 (452)
T 3zyi_A           55 QFSKVVCTRRGLS-EVPQGIP---SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLEL  130 (452)
T ss_dssp             SSCEEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCcEEEECCCCcC-ccCCCCC---CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEEC
Confidence            3456778888887 6776553   57888888888888888888888888888888888888888888888888888888


Q ss_pred             cCccccCCCCcccccccccCCCCceEEEeecCCCCccCCccccccccccceEEecC-CcceeccCccccCcccccEEEcc
Q 045449          309 ADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGILPKSIGNFSLSLETILMAN-CSISGNIPQVVGNLSNLLVLELG  387 (823)
Q Consensus       309 ~~N~l~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~-N~l~~~~p~~~~~l~~L~~L~Ls  387 (823)
                      ++|+++..+     +..|.++++|++|+|++|.+++..+..|..+ ++|++|++++ |.+....+..|.++++|++|+|+
T Consensus       131 ~~n~l~~~~-----~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l-~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~  204 (452)
T 3zyi_A          131 FDNWLTVIP-----SGAFEYLSKLRELWLRNNPIESIPSYAFNRV-PSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLG  204 (452)
T ss_dssp             CSSCCSBCC-----TTTSSSCTTCCEEECCSCCCCEECTTTTTTC-TTCCEEECCCCTTCCEECTTTTTTCTTCCEEECT
T ss_pred             CCCcCCccC-----hhhhcccCCCCEEECCCCCcceeCHhHHhcC-CcccEEeCCCCCCccccChhhccCCCCCCEEECC
Confidence            888887663     3346667777777777777776555556665 5666666666 33443334456666666666666


Q ss_pred             cCcCCCCchhcccccCCCCEEEccCCCCCCcchHhhhcCCCCCEEEcccCcCcccccccccCCCCCCeEeccCCcccccc
Q 045449          388 GNNLTGPIPVTFSQLQTLQAFDLTRNKLAGPITDELCHLARLHSLVLQGNKFSGSIPSCLGNLTSVRVLYLGLNIFTSVL  467 (823)
Q Consensus       388 ~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~  467 (823)
                      +|++++ +| .+..+++|++|+|++|+|++..|..|.++++|+.|+|++|++++..|..|.++++|+.|+|++|++++..
T Consensus       205 ~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  282 (452)
T 3zyi_A          205 MCNIKD-MP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLP  282 (452)
T ss_dssp             TSCCSS-CC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             CCcccc-cc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccC
Confidence            666663 23 3555666666666666666655666666666666666666666655666666666666666666666555


Q ss_pred             chhhhccCCCcEEecccccccc
Q 045449          468 SSTIWNLKDILFIDVSSNFLDG  489 (823)
Q Consensus       468 p~~~~~l~~L~~LdLs~N~l~g  489 (823)
                      +..+..+++|+.|+|++|.+..
T Consensus       283 ~~~~~~l~~L~~L~L~~Np~~C  304 (452)
T 3zyi_A          283 HDLFTPLRYLVELHLHHNPWNC  304 (452)
T ss_dssp             TTSSTTCTTCCEEECCSSCEEC
T ss_pred             hHHhccccCCCEEEccCCCcCC
Confidence            5555555566666666665543

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.96  E-value=1.7e-30  Score=279.21  Aligned_cols=255  Identities=20%  Similarity=0.201  Sum_probs=160.2

Q ss_pred             cCCcchhhhhccccccccCCccccccCCCCCcEEEccCCcc-cccCCcccc------cCCCCccEEEeeccccccccCcc
Q 045449          200 IGNLPYLARLALATNNLVGVVPVTIFNMSALKEISLLNNSL-SGSLPSRID------LSLPNVETLNLGINSFSGTIPSS  272 (823)
Q Consensus       200 l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l-~g~lp~~~~------~~l~~L~~L~Ls~N~l~~~~p~~  272 (823)
                      ++..++|+.|++++|.+  .+|..+...  |+.|+|++|.+ .+.+|..+.      ..+++|++|+|++|++++.+|..
T Consensus        39 ~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  114 (312)
T 1wwl_A           39 YGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPP  114 (312)
T ss_dssp             EEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCC
T ss_pred             EccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHH
Confidence            45566677777777777  556555443  77777777777 345555443      13677888888888888777776


Q ss_pred             c--cCCCCCCeEEeecccccccCCCccCCCcccCcccccCccccCCCCcccccccccCCCCceEEEeecCCCCccCCccc
Q 045449          273 I--TNSSKLSDLELGENLFSGFIPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGILPKSI  350 (823)
Q Consensus       273 ~--~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~  350 (823)
                      +  ..+++|++|+|++|++++. |..++.+..                        ..+++|++|+|++|++++..|..+
T Consensus       115 ~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~------------------------~~~~~L~~L~L~~N~l~~~~~~~~  169 (312)
T 1wwl_A          115 LLEATGPDLNILNLRNVSWATR-DAWLAELQQ------------------------WLKPGLKVLSIAQAHSLNFSCEQV  169 (312)
T ss_dssp             SSSCCSCCCSEEEEESCBCSSS-SSHHHHHHT------------------------TCCTTCCEEEEESCSCCCCCTTTC
T ss_pred             HHHhcCCCccEEEccCCCCcch-hHHHHHHHH------------------------hhcCCCcEEEeeCCCCccchHHHh
Confidence            5  7778888888888888776 665554410                        001333344444444444334444


Q ss_pred             cccccccceEEecCCcceec--cCccc--cCcccccEEEcccCcCCC--Cch-hcccccCCCCEEEccCCCCCCcch-Hh
Q 045449          351 GNFSLSLETILMANCSISGN--IPQVV--GNLSNLLVLELGGNNLTG--PIP-VTFSQLQTLQAFDLTRNKLAGPIT-DE  422 (823)
Q Consensus       351 ~~~~~~L~~L~L~~N~l~~~--~p~~~--~~l~~L~~L~Ls~N~l~g--~~p-~~~~~l~~L~~L~Ls~N~l~~~~p-~~  422 (823)
                      +.+ ++|++|++++|++.+.  .|..+  ..+++|++|+|++|++++  .++ ..+..+++|++|+|++|++++.+| ..
T Consensus       170 ~~l-~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~  248 (312)
T 1wwl_A          170 RVF-PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPS  248 (312)
T ss_dssp             CCC-SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSC
T ss_pred             ccC-CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhh
Confidence            444 3444455555444433  12222  566777777777777763  122 234566777777777777776654 33


Q ss_pred             hhcCCCCCEEEcccCcCcccccccccCCCCCCeEeccCCccccccchhhhccCCCcEEecccccccc
Q 045449          423 LCHLARLHSLVLQGNKFSGSIPSCLGNLTSVRVLYLGLNIFTSVLSSTIWNLKDILFIDVSSNFLDG  489 (823)
Q Consensus       423 ~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g  489 (823)
                      +..+++|++|+|++|+|+ .+|..+.  ++|+.|+|++|++++. |. +..+++|++|++++|++++
T Consensus       249 ~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          249 CDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             CCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred             hhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence            455677777777777777 6666665  6777788888877775 44 7777788888888887765

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.96  E-value=6.6e-32  Score=316.97  Aligned_cols=407  Identities=11%  Similarity=0.014  Sum_probs=302.5

Q ss_pred             CCCCCCCCCCCCCEEECCCCcC---cCCCchh------------hhcCCCCcEEecccccccCccCccccCCCCCCcc-c
Q 045449           91 NIPSSIFNMHTLKLLDFSDNQL---FGSLSSF------------IFNMSSMTTIDLSINRLSGELPANICKIPSTLSK-C  154 (823)
Q Consensus        91 ~~p~~~~~l~~L~~L~Ls~N~l---~~~~p~~------------~~~l~~L~~L~Ls~N~l~~~~p~~~~~~p~~~~~-l  154 (823)
                      ..+..+..+++|++|+|+++..   .+.+|..            ...+++|++|+|++|.+++..+..+       .. +
T Consensus        64 ~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l-------~~~~  136 (592)
T 3ogk_B           64 TPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRL-------AKAR  136 (592)
T ss_dssp             CHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHH-------HHHH
T ss_pred             ChHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHH-------HHhc
Confidence            3444556788999999987532   1233322            2378999999999998886655555       33 3


Q ss_pred             c-ccceeeeccceeeccCccccccchhhHHHHHhhcCCCcccCCcccCCcchhhhhccccccccCC----ccccccCCCC
Q 045449          155 K-QLEELNLGFNNLSGAIPKEIGNLTKLKEIISTITNSTVCEIPREIGNLPYLARLALATNNLVGV----VPVTIFNMSA  229 (823)
Q Consensus       155 ~-~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~~l~~n~~~~~ip~~l~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~  229 (823)
                      + +|++|+|++|.-.  .+.      .+..+               ..++++|++|+|++|.+++.    ++..+.++++
T Consensus       137 ~~~L~~L~L~~~~~~--~~~------~l~~~---------------~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~  193 (592)
T 3ogk_B          137 ADDLETLKLDKCSGF--TTD------GLLSI---------------VTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTS  193 (592)
T ss_dssp             GGGCCEEEEESCEEE--EHH------HHHHH---------------HHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCC
T ss_pred             cccCcEEECcCCCCc--CHH------HHHHH---------------HhhCCCCCEEECccccccCcchhHHHHHHhcCCC
Confidence            3 4999999998721  111      11111               23467899999999998876    4445668899


Q ss_pred             CcEEEccCCccc----ccCCcccccCCCCccEEEeeccccccccCccccCCCCCCeEEeeccccc---ccCCCccCCCcc
Q 045449          230 LKEISLLNNSLS----GSLPSRIDLSLPNVETLNLGINSFSGTIPSSITNSSKLSDLELGENLFS---GFIPNTIGNLRN  302 (823)
Q Consensus       230 L~~L~Ls~N~l~----g~lp~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~---~~~p~~~~~l~~  302 (823)
                      |++|++++|.++    +.++..+. .+++|++|+|++|.+.+ +|..+.++++|+.|+++++...   +..+..+..+++
T Consensus       194 L~~L~L~~n~~~~~~~~~l~~~~~-~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~  271 (592)
T 3ogk_B          194 LEVLNFYMTEFAKISPKDLETIAR-NCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRK  271 (592)
T ss_dssp             CCEEECTTCCCSSCCHHHHHHHHH-HCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTT
T ss_pred             ccEEEeeccCCCccCHHHHHHHHh-hCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhcccc
Confidence            999999999997    23333333 48999999999999986 7788999999999999974433   344567788899


Q ss_pred             cCcccccCccccCCCCcccccccccCCCCceEEEeecCCCCccCC-ccccccccccceEEecCCcceeccCccccCcccc
Q 045449          303 LEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGILP-KSIGNFSLSLETILMANCSISGNIPQVVGNLSNL  381 (823)
Q Consensus       303 L~~L~L~~N~l~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p-~~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L  381 (823)
                      |+.|+++++....      ++..+..+++|+.|+|++|.+++... ..+..+ ++|++|+++++...+.++..+..+++|
T Consensus       272 L~~L~l~~~~~~~------l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~-~~L~~L~L~~~~~~~~l~~~~~~~~~L  344 (592)
T 3ogk_B          272 LCRLGLSYMGPNE------MPILFPFAAQIRKLDLLYALLETEDHCTLIQKC-PNLEVLETRNVIGDRGLEVLAQYCKQL  344 (592)
T ss_dssp             CCEEEETTCCTTT------GGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTC-TTCCEEEEEGGGHHHHHHHHHHHCTTC
T ss_pred             ccccCccccchhH------HHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhC-cCCCEEeccCccCHHHHHHHHHhCCCC
Confidence            9999998863332      55677889999999999999876544 334566 799999999444344455556778999


Q ss_pred             cEEEcc-----------cCcCCCC-chhcccccCCCCEEEccCCCCCCcchHhhhc-CCCCCEEEcc----cCcCccc--
Q 045449          382 LVLELG-----------GNNLTGP-IPVTFSQLQTLQAFDLTRNKLAGPITDELCH-LARLHSLVLQ----GNKFSGS--  442 (823)
Q Consensus       382 ~~L~Ls-----------~N~l~g~-~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~-l~~L~~L~Ls----~N~l~g~--  442 (823)
                      ++|+++           .|.+++. ++..+..+++|++|+++.|++++..+..+.. +++|+.|+|+    .|.+++.  
T Consensus       345 ~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~  424 (592)
T 3ogk_B          345 KRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPL  424 (592)
T ss_dssp             CEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCC
T ss_pred             CEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchH
Confidence            999999           4677754 3333566899999999999999888888766 9999999997    7788864  


Q ss_pred             ---ccccccCCCCCCeEeccCC--ccccccchhhhc-cCCCcEEecccccccc-ccCccccCCCCCcEEEcccCCCCCCC
Q 045449          443 ---IPSCLGNLTSVRVLYLGLN--IFTSVLSSTIWN-LKDILFIDVSSNFLDG-PLSLDIGNLKVVIGLDFSRNNLSGDI  515 (823)
Q Consensus       443 ---~p~~~~~l~~L~~L~Ls~N--~l~~~~p~~~~~-l~~L~~LdLs~N~l~g-~~p~~~~~l~~L~~L~ls~N~l~g~i  515 (823)
                         ++..+.++++|+.|+|+.+  .+++..+..+.. +++|+.|++++|.+++ .++..+..++.|++|++++|++++..
T Consensus       425 ~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~  504 (592)
T 3ogk_B          425 DNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERA  504 (592)
T ss_dssp             HHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHH
T ss_pred             HHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHH
Confidence               5555778999999999853  478777777655 8999999999999987 45556688999999999999987432


Q ss_pred             CCcccCccCCCCCCCCCCCcccccCCcc
Q 045449          516 PITIGEGEIPRGGPFANLTAKSFMGNEL  543 (823)
Q Consensus       516 p~~~~~g~ip~~~~~~~~~~~~~~~n~~  543 (823)
                      ...+.       ..+..+..+.+.+|..
T Consensus       505 ~~~~~-------~~l~~L~~L~ls~n~i  525 (592)
T 3ogk_B          505 IAAAV-------TKLPSLRYLWVQGYRA  525 (592)
T ss_dssp             HHHHH-------HHCSSCCEEEEESCBC
T ss_pred             HHHHH-------HhcCccCeeECcCCcC
Confidence            22111       1245566777888873

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.96  E-value=1.6e-28  Score=277.15  Aligned_cols=248  Identities=23%  Similarity=0.250  Sum_probs=164.8

Q ss_pred             CCcEEEccCCcccccCCcccccCCCCccEEEeeccccccccCccccCCCCCCeEEeecccccccCCCccCCCcccCcccc
Q 045449          229 ALKEISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSITNSSKLSDLELGENLFSGFIPNTIGNLRNLEFGNI  308 (823)
Q Consensus       229 ~L~~L~Ls~N~l~g~lp~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  308 (823)
                      ....++.+++.++ .+|..+.   ++++.|+|++|++++..+..|.++++|++|+|++|++++..+..|.++++|++|+|
T Consensus        44 ~~~~v~c~~~~l~-~iP~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L  119 (440)
T 3zyj_A           44 QFSKVICVRKNLR-EVPDGIS---TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLEL  119 (440)
T ss_dssp             TSCEEECCSCCCS-SCCSCCC---TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEEC
T ss_pred             CCCEEEeCCCCcC-cCCCCCC---CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEEC
Confidence            3557778888887 7777653   57888888888888877788888888888888888888877778888888888888


Q ss_pred             cCccccCCCCcccccccccCCCCceEEEeecCCCCccCCccccccccccceEEecCC-cceeccCccccCcccccEEEcc
Q 045449          309 ADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGILPKSIGNFSLSLETILMANC-SISGNIPQVVGNLSNLLVLELG  387 (823)
Q Consensus       309 ~~N~l~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N-~l~~~~p~~~~~l~~L~~L~Ls  387 (823)
                      ++|+++..+     +..|..+++|+.|+|++|.+++..+..|..+ ++|++|++++| .+....+..|.++++|++|+|+
T Consensus       120 ~~n~l~~~~-----~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l-~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~  193 (440)
T 3zyj_A          120 FDNRLTTIP-----NGAFVYLSKLKELWLRNNPIESIPSYAFNRI-PSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLA  193 (440)
T ss_dssp             CSSCCSSCC-----TTTSCSCSSCCEEECCSCCCCEECTTTTTTC-TTCCEEECCCCTTCCEECTTTTTTCSSCCEEECT
T ss_pred             CCCcCCeeC-----HhHhhccccCceeeCCCCcccccCHHHhhhC-cccCEeCCCCCCCcceeCcchhhcccccCeecCC
Confidence            888777652     2356667777777777777766555566665 56666666663 3333334456666666666666


Q ss_pred             cCcCCCCchhcccccCCCCEEEccCCCCCCcchHhhhcCCCCCEEEcccCcCcccccccccCCCCCCeEeccCCcccccc
Q 045449          388 GNNLTGPIPVTFSQLQTLQAFDLTRNKLAGPITDELCHLARLHSLVLQGNKFSGSIPSCLGNLTSVRVLYLGLNIFTSVL  467 (823)
Q Consensus       388 ~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~  467 (823)
                      +|+++ .+| .+..+++|++|+|++|++++..|..|.++++|+.|+|++|++++..|..|.++++|+.|+|++|++++..
T Consensus       194 ~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  271 (440)
T 3zyj_A          194 MCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLP  271 (440)
T ss_dssp             TSCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCC
T ss_pred             CCcCc-ccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccC
Confidence            66666 333 2555666666666666666555556666666666666666666555555666666666666666666555


Q ss_pred             chhhhccCCCcEEeccccccc
Q 045449          468 SSTIWNLKDILFIDVSSNFLD  488 (823)
Q Consensus       468 p~~~~~l~~L~~LdLs~N~l~  488 (823)
                      +..+..+++|+.|+|++|.+.
T Consensus       272 ~~~~~~l~~L~~L~L~~Np~~  292 (440)
T 3zyj_A          272 HDLFTPLHHLERIHLHHNPWN  292 (440)
T ss_dssp             TTTTSSCTTCCEEECCSSCEE
T ss_pred             hhHhccccCCCEEEcCCCCcc
Confidence            555555555555555555554

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.96  E-value=4.9e-29  Score=264.25  Aligned_cols=229  Identities=22%  Similarity=0.230  Sum_probs=185.6

Q ss_pred             cEEEeeccccccccCccccCCCCCCeEEeecccccccCCCccCCCcccCcccccCccccCCCCcccccccccCCCCceEE
Q 045449          256 ETLNLGINSFSGTIPSSITNSSKLSDLELGENLFSGFIPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVL  335 (823)
Q Consensus       256 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~l~~L~~L  335 (823)
                      ++++.+++.++ .+|..+  .++|++|++++|.+++..+..|..+++                             |++|
T Consensus        14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~-----------------------------L~~L   61 (285)
T 1ozn_A           14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRN-----------------------------LTIL   61 (285)
T ss_dssp             CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTT-----------------------------CCEE
T ss_pred             eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCC-----------------------------CCEE
Confidence            45666666665 344433  245666666666666555555555544                             4555


Q ss_pred             EeecCCCCccCCccccccccccceEEecCCc-ceeccCccccCcccccEEEcccCcCCCCchhcccccCCCCEEEccCCC
Q 045449          336 IVTGNPLDGILPKSIGNFSLSLETILMANCS-ISGNIPQVVGNLSNLLVLELGGNNLTGPIPVTFSQLQTLQAFDLTRNK  414 (823)
Q Consensus       336 ~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~-l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~  414 (823)
                      ++++|.+++..|..+..+ ++|++|++++|. ++...|..|..+++|++|++++|++++..|..|..+++|++|++++|+
T Consensus        62 ~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  140 (285)
T 1ozn_A           62 WLHSNVLARIDAAAFTGL-ALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA  140 (285)
T ss_dssp             ECCSSCCCEECTTTTTTC-TTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             ECCCCccceeCHhhcCCc-cCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCc
Confidence            555555555555556665 567777777775 666667888899999999999999998889999999999999999999


Q ss_pred             CCCcchHhhhcCCCCCEEEcccCcCcccccccccCCCCCCeEeccCCccccccchhhhccCCCcEEeccccccccccCcc
Q 045449          415 LAGPITDELCHLARLHSLVLQGNKFSGSIPSCLGNLTSVRVLYLGLNIFTSVLSSTIWNLKDILFIDVSSNFLDGPLSLD  494 (823)
Q Consensus       415 l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~~p~~  494 (823)
                      +++..+..|..+++|++|+|++|++++..+..|..+++|+.|+|++|.+++..|..+..+++|+.|++++|.+++..+..
T Consensus       141 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  220 (285)
T 1ozn_A          141 LQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEA  220 (285)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHH
T ss_pred             ccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHH
Confidence            99888888999999999999999999877778999999999999999999999999999999999999999999877778


Q ss_pred             ccCCCCCcEEEcccCCCCCCCCC
Q 045449          495 IGNLKVVIGLDFSRNNLSGDIPI  517 (823)
Q Consensus       495 ~~~l~~L~~L~ls~N~l~g~ip~  517 (823)
                      +..++.|+.|++++|++.+..+.
T Consensus       221 ~~~l~~L~~L~l~~N~~~c~~~~  243 (285)
T 1ozn_A          221 LAPLRALQYLRLNDNPWVCDCRA  243 (285)
T ss_dssp             HTTCTTCCEEECCSSCEECSGGG
T ss_pred             cccCcccCEEeccCCCccCCCCc
Confidence            99999999999999999976654

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.96  E-value=1.3e-30  Score=280.63  Aligned_cols=267  Identities=19%  Similarity=0.157  Sum_probs=175.3

Q ss_pred             CcEEEccCCcccccCCcccccCCCCccEEEeeccccccccCccccCCCCCCeEEeecccccccCCCccCCCcccCccccc
Q 045449          230 LKEISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSITNSSKLSDLELGENLFSGFIPNTIGNLRNLEFGNIA  309 (823)
Q Consensus       230 L~~L~Ls~N~l~g~lp~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~  309 (823)
                      ++..+++.+.+. ..+..++..+++|++|+|++|++++..|..|.++++|++|+|++|++++..+  +..+++|++|+++
T Consensus        12 l~i~~ls~~~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls   88 (317)
T 3o53_A           12 YKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN   88 (317)
T ss_dssp             EEEESCCTTTHH-HHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred             eeEeeccccchh-hhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence            344455555554 3333333345556666666666665555566666666666666666665443  5666666666666


Q ss_pred             CccccCCCCcccccccccCCCCceEEEeecCCCCccCCccccccccccceEEecCCcceeccCccccCcccccEEEcccC
Q 045449          310 DNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGILPKSIGNFSLSLETILMANCSISGNIPQVVGNLSNLLVLELGGN  389 (823)
Q Consensus       310 ~N~l~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N  389 (823)
                      +|++++..          ..++|+.|++++|.+++..+..   + ++|++|++++|++++..+..+..+++|++|+|++|
T Consensus        89 ~n~l~~l~----------~~~~L~~L~l~~n~l~~~~~~~---~-~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N  154 (317)
T 3o53_A           89 NNYVQELL----------VGPSIETLHAANNNISRVSCSR---G-QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN  154 (317)
T ss_dssp             SSEEEEEE----------ECTTCCEEECCSSCCSEEEECC---C-SSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTS
T ss_pred             CCcccccc----------CCCCcCEEECCCCccCCcCccc---c-CCCCEEECCCCCCCCccchhhhccCCCCEEECCCC
Confidence            66665431          2256666777777766654433   2 46777777777777777777777777788888888


Q ss_pred             cCCCCchhcc-cccCCCCEEEccCCCCCCcchHhhhcCCCCCEEEcccCcCcccccccccCCCCCCeEeccCCccccccc
Q 045449          390 NLTGPIPVTF-SQLQTLQAFDLTRNKLAGPITDELCHLARLHSLVLQGNKFSGSIPSCLGNLTSVRVLYLGLNIFTSVLS  468 (823)
Q Consensus       390 ~l~g~~p~~~-~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p  468 (823)
                      ++++..+..+ ..+++|++|+|++|++++. +. ...+++|+.|+|++|++++. |..+..+++|+.|+|++|++++ +|
T Consensus       155 ~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~~-l~  230 (317)
T 3o53_A          155 EIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVL-IE  230 (317)
T ss_dssp             CCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCCE-EC
T ss_pred             CCCcccHHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCcccc-hh
Confidence            7776666655 3677788888888877754 22 23477788888888888753 4447777888888888888775 56


Q ss_pred             hhhhccCCCcEEeccccccc-cccCccccCCCCCcEEEcc-cCCCCCCCCC
Q 045449          469 STIWNLKDILFIDVSSNFLD-GPLSLDIGNLKVVIGLDFS-RNNLSGDIPI  517 (823)
Q Consensus       469 ~~~~~l~~L~~LdLs~N~l~-g~~p~~~~~l~~L~~L~ls-~N~l~g~ip~  517 (823)
                      ..+..+++|+.|++++|.++ +.+|..+..++.|+.|+++ .+.++|..|.
T Consensus       231 ~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~  281 (317)
T 3o53_A          231 KALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE  281 (317)
T ss_dssp             TTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSC
T ss_pred             hHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchh
Confidence            66777788888888888887 6677777778888888887 4556654443

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.96  E-value=2.2e-28  Score=276.89  Aligned_cols=252  Identities=19%  Similarity=0.221  Sum_probs=227.5

Q ss_pred             CccEEEeeccccccccCccccCCCCCCeEEeecccccccCCCccCCCcccCcccccCccccCCCCcccccccccCCCCce
Q 045449          254 NVETLNLGINSFSGTIPSSITNSSKLSDLELGENLFSGFIPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLK  333 (823)
Q Consensus       254 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~l~~L~  333 (823)
                      ....++.+++.++ .+|..+.  +++++|+|++|++++..|..|.++++|++|+|++|.+++.     .+..|.++++|+
T Consensus        55 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~-----~~~~~~~l~~L~  126 (452)
T 3zyi_A           55 QFSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQI-----EVGAFNGLASLN  126 (452)
T ss_dssp             SSCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE-----CTTTTTTCTTCC
T ss_pred             CCcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCc-----ChhhccCcccCC
Confidence            4567889988888 5777665  5899999999999999999999999999999999999987     446789999999


Q ss_pred             EEEeecCCCCccCCccccccccccceEEecCCcceeccCccccCcccccEEEcccCcCCCCch-hcccccCCCCEEEccC
Q 045449          334 VLIVTGNPLDGILPKSIGNFSLSLETILMANCSISGNIPQVVGNLSNLLVLELGGNNLTGPIP-VTFSQLQTLQAFDLTR  412 (823)
Q Consensus       334 ~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p-~~~~~l~~L~~L~Ls~  412 (823)
                      +|+|++|.+++..+..|..+ ++|++|+|++|+++...+..|.++++|++|+|++|+..+.++ ..|.++++|++|+|++
T Consensus       127 ~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~  205 (452)
T 3zyi_A          127 TLELFDNWLTVIPSGAFEYL-SKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGM  205 (452)
T ss_dssp             EEECCSSCCSBCCTTTSSSC-TTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTT
T ss_pred             EEECCCCcCCccChhhhccc-CCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCC
Confidence            99999999998888888888 799999999999998888899999999999999954444554 5689999999999999


Q ss_pred             CCCCCcchHhhhcCCCCCEEEcccCcCcccccccccCCCCCCeEeccCCccccccchhhhccCCCcEEeccccccccccC
Q 045449          413 NKLAGPITDELCHLARLHSLVLQGNKFSGSIPSCLGNLTSVRVLYLGLNIFTSVLSSTIWNLKDILFIDVSSNFLDGPLS  492 (823)
Q Consensus       413 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~~p  492 (823)
                      |++++. | .+..+++|+.|+|++|.+++..|..|.++++|+.|+|++|++++..|..+..+++|+.|||++|+|++..+
T Consensus       206 n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  283 (452)
T 3zyi_A          206 CNIKDM-P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPH  283 (452)
T ss_dssp             SCCSSC-C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred             Cccccc-c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccCh
Confidence            999965 4 47889999999999999999999999999999999999999999999999999999999999999998888


Q ss_pred             ccccCCCCCcEEEcccCCCCCCCC
Q 045449          493 LDIGNLKVVIGLDFSRNNLSGDIP  516 (823)
Q Consensus       493 ~~~~~l~~L~~L~ls~N~l~g~ip  516 (823)
                      ..+..++.|+.|+|++|.+.+...
T Consensus       284 ~~~~~l~~L~~L~L~~Np~~CdC~  307 (452)
T 3zyi_A          284 DLFTPLRYLVELHLHHNPWNCDCD  307 (452)
T ss_dssp             TSSTTCTTCCEEECCSSCEECSTT
T ss_pred             HHhccccCCCEEEccCCCcCCCCC
Confidence            889999999999999999987654

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.96  E-value=4.2e-28  Score=273.63  Aligned_cols=251  Identities=20%  Similarity=0.226  Sum_probs=224.5

Q ss_pred             CccEEEeeccccccccCccccCCCCCCeEEeecccccccCCCccCCCcccCcccccCccccCCCCcccccccccCCCCce
Q 045449          254 NVETLNLGINSFSGTIPSSITNSSKLSDLELGENLFSGFIPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLK  333 (823)
Q Consensus       254 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~l~~L~  333 (823)
                      ....++.+++.++ .+|..+.  ++++.|+|++|++++..+..|.++++|++|+|++|.++..     .+..|.++++|+
T Consensus        44 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i-----~~~~~~~l~~L~  115 (440)
T 3zyj_A           44 QFSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTI-----EIGAFNGLANLN  115 (440)
T ss_dssp             TSCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEE-----CGGGGTTCSSCC
T ss_pred             CCCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCcc-----ChhhccCCccCC
Confidence            4568889999988 6787665  5899999999999999999999999999999999999886     456789999999


Q ss_pred             EEEeecCCCCccCCccccccccccceEEecCCcceeccCccccCcccccEEEcccCcCCCCch-hcccccCCCCEEEccC
Q 045449          334 VLIVTGNPLDGILPKSIGNFSLSLETILMANCSISGNIPQVVGNLSNLLVLELGGNNLTGPIP-VTFSQLQTLQAFDLTR  412 (823)
Q Consensus       334 ~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p-~~~~~l~~L~~L~Ls~  412 (823)
                      .|+|++|++++..+..|..+ .+|++|+|++|.++...+..|.++++|++|+|++|+..+.++ ..|.++++|++|+|++
T Consensus       116 ~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~  194 (440)
T 3zyj_A          116 TLELFDNRLTTIPNGAFVYL-SKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAM  194 (440)
T ss_dssp             EEECCSSCCSSCCTTTSCSC-SSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTT
T ss_pred             EEECCCCcCCeeCHhHhhcc-ccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCC
Confidence            99999999998877788888 799999999999998888899999999999999955444444 5789999999999999


Q ss_pred             CCCCCcchHhhhcCCCCCEEEcccCcCcccccccccCCCCCCeEeccCCccccccchhhhccCCCcEEeccccccccccC
Q 045449          413 NKLAGPITDELCHLARLHSLVLQGNKFSGSIPSCLGNLTSVRVLYLGLNIFTSVLSSTIWNLKDILFIDVSSNFLDGPLS  492 (823)
Q Consensus       413 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~~p  492 (823)
                      |+++. +| .+..+++|+.|+|++|++++..|..|.++++|+.|+|++|++++..+..|..+++|+.|||++|++++..+
T Consensus       195 n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  272 (440)
T 3zyj_A          195 CNLRE-IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPH  272 (440)
T ss_dssp             SCCSS-CC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCT
T ss_pred             CcCcc-cc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccCh
Confidence            99994 45 47889999999999999999889999999999999999999999999999999999999999999998888


Q ss_pred             ccccCCCCCcEEEcccCCCCCCC
Q 045449          493 LDIGNLKVVIGLDFSRNNLSGDI  515 (823)
Q Consensus       493 ~~~~~l~~L~~L~ls~N~l~g~i  515 (823)
                      ..+..++.|+.|+|++|.+.+..
T Consensus       273 ~~~~~l~~L~~L~L~~Np~~CdC  295 (440)
T 3zyj_A          273 DLFTPLHHLERIHLHHNPWNCNC  295 (440)
T ss_dssp             TTTSSCTTCCEEECCSSCEECSS
T ss_pred             hHhccccCCCEEEcCCCCccCCC
Confidence            88899999999999999988654

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.96  E-value=9e-30  Score=274.19  Aligned_cols=267  Identities=18%  Similarity=0.136  Sum_probs=189.8

Q ss_pred             hhccccccccCCccccccCCCCCcEEEccCCcccccCCcccccCCCCccEEEeeccccccccCccccCCCCCCeEEeecc
Q 045449          208 RLALATNNLVGVVPVTIFNMSALKEISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSITNSSKLSDLELGEN  287 (823)
Q Consensus       208 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~lp~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N  287 (823)
                      ..+++.+.+....+..+..+++|++|+|++|.+++..|..+. .+++|++|+|++|++++..|  +..+++|++|+|++|
T Consensus        14 i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n   90 (317)
T 3o53_A           14 IEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLA-PFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNN   90 (317)
T ss_dssp             EESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHT-TCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSS
T ss_pred             EeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhh-CCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCC
Confidence            334444444433344444455566666666666533333332 35666666666666654443  566666666666666


Q ss_pred             cccccCCCccCCCcccCcccccCccccCCCCcccccccccCCCCceEEEeecCCCCccCCccccccccccceEEecCCcc
Q 045449          288 LFSGFIPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGILPKSIGNFSLSLETILMANCSI  367 (823)
Q Consensus       288 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l  367 (823)
                      ++++..+     .++|++|++++|++++..        ...+++|+.|++++|.+++..|..+..+ ++|++|++++|.+
T Consensus        91 ~l~~l~~-----~~~L~~L~l~~n~l~~~~--------~~~~~~L~~L~l~~N~l~~~~~~~~~~l-~~L~~L~Ls~N~l  156 (317)
T 3o53_A           91 YVQELLV-----GPSIETLHAANNNISRVS--------CSRGQGKKNIYLANNKITMLRDLDEGCR-SRVQYLDLKLNEI  156 (317)
T ss_dssp             EEEEEEE-----CTTCCEEECCSSCCSEEE--------ECCCSSCEEEECCSSCCCSGGGBCTGGG-SSEEEEECTTSCC
T ss_pred             ccccccC-----CCCcCEEECCCCccCCcC--------ccccCCCCEEECCCCCCCCccchhhhcc-CCCCEEECCCCCC
Confidence            6664432     256666666666666542        1235667888888888887777777777 6888888888888


Q ss_pred             eeccCcccc-CcccccEEEcccCcCCCCchhcccccCCCCEEEccCCCCCCcchHhhhcCCCCCEEEcccCcCccccccc
Q 045449          368 SGNIPQVVG-NLSNLLVLELGGNNLTGPIPVTFSQLQTLQAFDLTRNKLAGPITDELCHLARLHSLVLQGNKFSGSIPSC  446 (823)
Q Consensus       368 ~~~~p~~~~-~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~  446 (823)
                      ++..+..+. .+++|++|+|++|++++. |. ...+++|++|+|++|++++. |..+..+++|+.|+|++|+++ .+|..
T Consensus       157 ~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~-~l~~~  232 (317)
T 3o53_A          157 DTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LIEKA  232 (317)
T ss_dssp             CEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-EECTT
T ss_pred             CcccHHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCccc-chhhH
Confidence            887777664 688999999999999854 33 34588999999999999965 445889999999999999999 57888


Q ss_pred             ccCCCCCCeEeccCCccc-cccchhhhccCCCcEEecc-ccccccccCccc
Q 045449          447 LGNLTSVRVLYLGLNIFT-SVLSSTIWNLKDILFIDVS-SNFLDGPLSLDI  495 (823)
Q Consensus       447 ~~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~LdLs-~N~l~g~~p~~~  495 (823)
                      +..+++|+.|+|++|.++ +.+|..+..++.|+.|+++ .+.++|..|...
T Consensus       233 ~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~~~  283 (317)
T 3o53_A          233 LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEEC  283 (317)
T ss_dssp             CCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSCCC
T ss_pred             hhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchhcc
Confidence            999999999999999999 7888999999999999999 456777766543

>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}

Probab=99.95  E-value=1.5e-29  Score=278.53  Aligned_cols=151  Identities=30%  Similarity=0.379  Sum_probs=127.8

Q ss_pred             ccCCccceeeccC------------CeEEEEEEehHhh--HHHHHHHHHHHHHHhhcchhhHHH----------------
Q 045449          628 DRFSENNLIGIGN------------GMEVAVKVFHQQY--ERALKSFEDECEVRKRIRHRNLVK----------------  677 (823)
Q Consensus       628 ~~f~~~~~lg~g~------------~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~----------------  677 (823)
                      ++|...+.||+|+            |+.||||+++...  ....+.+.+|++++++++|||||+                
T Consensus        54 ~~Y~~~~~lG~G~fG~V~~a~~~~t~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~~~~~  133 (398)
T 4b99_A           54 DEYEIIETIGNGAYGVVSSARRRLTGQQVAIKKIPNAFDVVTNAKRTLRELKILKHFKHDNIIAIKDILRPTVPYGEFKS  133 (398)
T ss_dssp             SSEEEEEEEEECSSCEEEEEEETTTCCEEEEEEETTTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSSCTTTCCC
T ss_pred             CCeEEEEEEecccCeEEEEEEECCCCCEEEEEEECccccchHHHHHHHHHHHHHHhcCCCCcceEeeeeecccccccCCE
Confidence            5788889999996            6779999996543  345578999999999999999997                


Q ss_pred             -----------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCc
Q 045449          678 -----------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQ  728 (823)
Q Consensus       678 -----------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~  728 (823)
                                                   ++.|++.+|+|+|+.+||||||||+|||++.++.+||+|||+|+.+.....
T Consensus       134 ~~ivmE~~~g~L~~~i~~~~~l~~~~~~~~~~qil~al~ylH~~~iiHRDlKP~NIl~~~~~~~Ki~DFGla~~~~~~~~  213 (398)
T 4b99_A          134 VYVVLDLMESDLHQIIHSSQPLTLEHVRYFLYQLLRGLKYMHSAQVIHRDLKPSNLLVNENCELKIGDFGMARGLCTSPA  213 (398)
T ss_dssp             EEEEEECCSEEHHHHHTSSSCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTCCEEECCCTTCBCC-----
T ss_pred             EEEEEeCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCcCcCCCcCccccccCCCCCEEEeecceeeecccCcc
Confidence                                         468999999999999999999999999999999999999999987643221


Q ss_pred             --cccccccccCCCcCcccccCCC-ccccccceehhhhhhccccCCCCCcCCC
Q 045449          729 --LSKQTQTLATIGYMAPEYGTKG-RVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       729 --~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                        .......+||+.|||||++.+. .|+.++||||+||++|+|++|..||.+.
T Consensus       214 ~~~~~~~~~~GT~~Y~APEv~~~~~~~~~~~DiWSlG~il~ell~G~~pF~g~  266 (398)
T 4b99_A          214 EHQYFMTEYVATRWYRAPELMLSLHEYTQAIDLWSVGCIFGEMLARRQLFPGK  266 (398)
T ss_dssp             --CCCCCSSCCCCTTCCHHHHTTCSCCCTHHHHHHHHHHHHHHHHTSCSSCCS
T ss_pred             ccccccccceeChHhcCHHHhcCCCCCCChhheehhHHHHHHHHHCCCCCCCC
Confidence              1233467899999999998775 4699999999999999999999999754

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.95  E-value=3e-27  Score=274.87  Aligned_cols=265  Identities=23%  Similarity=0.263  Sum_probs=218.2

Q ss_pred             hhhhhccccccccCCccccccCCCCCcEEEccCCcccccCCcccccCCCCccEEEeeccccccccCccccCCCCCCeEEe
Q 045449          205 YLARLALATNNLVGVVPVTIFNMSALKEISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSITNSSKLSDLEL  284 (823)
Q Consensus       205 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~lp~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  284 (823)
                      +++.|++++|+++ .+|..+.  ++|++|+|++|.|+ .+|.    .+++|++|+|++|+|++ +|.   .+++|++|+|
T Consensus        41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~L  108 (622)
T 3g06_A           41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTS-LPV---LPPGLLELSI  108 (622)
T ss_dssp             CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC----CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEE
T ss_pred             CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC----cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEEC
Confidence            4778999999998 5676665  78999999999998 6776    37899999999999984 665   6788999999


Q ss_pred             ecccccccCCCccCCCcccCcccccCccccCCCCcccccccccCCCCceEEEeecCCCCccCCccccccccccceEEecC
Q 045449          285 GENLFSGFIPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGILPKSIGNFSLSLETILMAN  364 (823)
Q Consensus       285 s~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~  364 (823)
                      ++|++++. |.   .+++|+.|++++|+++..+.         .+++|++|++++|.+++. |..    +.+|+.|++++
T Consensus       109 s~N~l~~l-~~---~l~~L~~L~L~~N~l~~lp~---------~l~~L~~L~Ls~N~l~~l-~~~----~~~L~~L~L~~  170 (622)
T 3g06_A          109 FSNPLTHL-PA---LPSGLCKLWIFGNQLTSLPV---------LPPGLQELSVSDNQLASL-PAL----PSELCKLWAYN  170 (622)
T ss_dssp             CSCCCCCC-CC---CCTTCCEEECCSSCCSCCCC---------CCTTCCEEECCSSCCSCC-CCC----CTTCCEEECCS
T ss_pred             cCCcCCCC-CC---CCCCcCEEECCCCCCCcCCC---------CCCCCCEEECcCCcCCCc-CCc----cCCCCEEECCC
Confidence            99999875 33   56889999999999988632         248899999999999864 432    26799999999


Q ss_pred             CcceeccCccccCcccccEEEcccCcCCCCchhcccccCCCCEEEccCCCCCCcchHhhhcCCCCCEEEcccCcCccccc
Q 045449          365 CSISGNIPQVVGNLSNLLVLELGGNNLTGPIPVTFSQLQTLQAFDLTRNKLAGPITDELCHLARLHSLVLQGNKFSGSIP  444 (823)
Q Consensus       365 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p  444 (823)
                      |.+++ +|   ..+++|+.|++++|++++ +|..   +++|+.|++++|.++. +|.   .+++|+.|+|++|+|++ +|
T Consensus       171 N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~~-l~~---~~~~L~~L~Ls~N~L~~-lp  237 (622)
T 3g06_A          171 NQLTS-LP---MLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPA---LPSGLKELIVSGNRLTS-LP  237 (622)
T ss_dssp             SCCSC-CC---CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CCC---CCTTCCEEECCSSCCSC-CC
T ss_pred             CCCCC-Cc---ccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCcccc-cCC---CCCCCCEEEccCCccCc-CC
Confidence            99986 45   457889999999999985 5543   4789999999999984 443   34789999999999996 66


Q ss_pred             ccccCCCCCCeEeccCCccccccchhhhccCCCcEEeccccccccccCccccCCCCCcEEEcccCCCCCCCCCccc
Q 045449          445 SCLGNLTSVRVLYLGLNIFTSVLSSTIWNLKDILFIDVSSNFLDGPLSLDIGNLKVVIGLDFSRNNLSGDIPITIG  520 (823)
Q Consensus       445 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~ip~~~~  520 (823)
                         ..+++|+.|+|++|.|++ +|.   .+++|+.|+|++|.|+ .+|..+.+++.|+.|+|++|+++|.+|..+.
T Consensus       238 ---~~l~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~  305 (622)
T 3g06_A          238 ---VLPSELKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALR  305 (622)
T ss_dssp             ---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHH
T ss_pred             ---CCCCcCcEEECCCCCCCc-CCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHH
Confidence               456889999999999996 444   6788999999999999 7898999999999999999999988777553

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.95  E-value=9.7e-31  Score=307.14  Aligned_cols=431  Identities=15%  Similarity=0.181  Sum_probs=279.9

Q ss_pred             CCccceeeeeCCCCCcEEEEEcCCCCCccccCcccCCCCCCcEEEccCCCCC---CCCCCCC------------CCCCCC
Q 045449           38 SVCIWIGITCDVNSHRVIGLNISSFNLQGTITPQLGNLSSLQTLDLSHNKLS---GNIPSSI------------FNMHTL  102 (823)
Q Consensus        38 ~~c~w~gv~c~~~~~~v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~N~l~---g~~p~~~------------~~l~~L  102 (823)
                      -|++|.++..    .....++++..... .....+..+++|++|+|+++...   +..|..+            ..+++|
T Consensus        33 vck~W~~~~~----~~~~~l~~~~~~~~-~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L  107 (594)
T 2p1m_B           33 VCKSWYEIER----WCRRKVFIGNCYAV-SPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWL  107 (594)
T ss_dssp             SCHHHHHHHH----HHCCEEEESSTTSS-CHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTC
T ss_pred             HHHHHHHhhh----hhceEEeecccccc-CHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCC
Confidence            3567998832    12345566543322 11233567788999999987632   1223222            357889


Q ss_pred             CEEECCCCcCcCCCchhhh-cCCCCcEEecccc-cccCc-cCccccCCCCCCccccccceeeeccceeeccCccccccch
Q 045449          103 KLLDFSDNQLFGSLSSFIF-NMSSMTTIDLSIN-RLSGE-LPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEIGNLT  179 (823)
Q Consensus       103 ~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~Ls~N-~l~~~-~p~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~  179 (823)
                      ++|+|++|.+++..+..+. .+++|++|+|++| .++.. ++. +      +.++++|++|+|++|.+++..+..+..  
T Consensus       108 ~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~-~------~~~~~~L~~L~L~~~~i~~~~~~~l~~--  178 (594)
T 2p1m_B          108 EEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAA-I------AATCRNLKELDLRESDVDDVSGHWLSH--  178 (594)
T ss_dssp             CEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHH-H------HHHCTTCCEEECTTCEEECCCGGGGGG--
T ss_pred             CeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHH-H------HHhCCCCCEEeCcCCccCCcchHHHHH--
Confidence            9999999998887777776 7899999999988 45432 222 1      257889999999999988655443321  


Q ss_pred             hhHHHHHhhcCCCcccCCcccCCcchhhhhcccccc--ccCC-ccccccCCCCCcEEEccCC-cccccCCcccccCCCCc
Q 045449          180 KLKEIISTITNSTVCEIPREIGNLPYLARLALATNN--LVGV-VPVTIFNMSALKEISLLNN-SLSGSLPSRIDLSLPNV  255 (823)
Q Consensus       180 ~L~~L~~l~~n~~~~~ip~~l~~l~~L~~L~Ls~N~--l~~~-~p~~~~~l~~L~~L~Ls~N-~l~g~lp~~~~~~l~~L  255 (823)
                                         ....+++|+.|+++.|.  ++.. ++..+.++++|++|+|++| .++ .+|..+.. +++|
T Consensus       179 -------------------~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~-~l~~~~~~-~~~L  237 (594)
T 2p1m_B          179 -------------------FPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLE-KLATLLQR-APQL  237 (594)
T ss_dssp             -------------------SCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHH-HHHHHHHH-CTTC
T ss_pred             -------------------HhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHH-HHHHHHhc-CCcc
Confidence                               22345677788888776  2211 1122235688888888887 444 35555544 7888


Q ss_pred             cEEEe-------eccccccccCccccCCCCCCeE-EeecccccccCCCccCCCcccCcccccCccccCCCCccccccccc
Q 045449          256 ETLNL-------GINSFSGTIPSSITNSSKLSDL-ELGENLFSGFIPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLT  327 (823)
Q Consensus       256 ~~L~L-------s~N~l~~~~p~~~~~l~~L~~L-~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~  327 (823)
                      ++|++       +.|.+.+ ++..+.++++|+.| .+.+... +.++..+..+++|+.|+|++|.+++..    +...+.
T Consensus       238 ~~L~l~~~~~~~~~~~~~~-l~~~l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~~~~----l~~~~~  311 (594)
T 2p1m_B          238 EELGTGGYTAEVRPDVYSG-LSVALSGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYATVQSYD----LVKLLC  311 (594)
T ss_dssp             SEEECSBCCCCCCHHHHHH-HHHHHHTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTCCCCHHH----HHHHHT
T ss_pred             eEcccccccCccchhhHHH-HHHHHhcCCCcccccCCcccch-hhHHHHHHhhCCCCEEEccCCCCCHHH----HHHHHh
Confidence            88884       4444554 34467788888887 3433322 234555556788888888888865431    223356


Q ss_pred             CCCCceEEEeecCCCCcc-CCccccccccccceEEe---------cCCcceeccCcccc-CcccccEEEcccCcCCCCch
Q 045449          328 NCKKLKVLIVTGNPLDGI-LPKSIGNFSLSLETILM---------ANCSISGNIPQVVG-NLSNLLVLELGGNNLTGPIP  396 (823)
Q Consensus       328 ~l~~L~~L~Ls~N~l~~~-~p~~~~~~~~~L~~L~L---------~~N~l~~~~p~~~~-~l~~L~~L~Ls~N~l~g~~p  396 (823)
                      .+++|+.|++++| +... ++.....+ ++|++|++         +.+.+++.....+. ++++|+.|+++.|++++..+
T Consensus       312 ~~~~L~~L~l~~~-~~~~~l~~l~~~~-~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~  389 (594)
T 2p1m_B          312 QCPKLQRLWVLDY-IEDAGLEVLASTC-KDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAAL  389 (594)
T ss_dssp             TCTTCCEEEEEGG-GHHHHHHHHHHHC-TTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHH
T ss_pred             cCCCcCEEeCcCc-cCHHHHHHHHHhC-CCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHH
Confidence            7788888888877 4322 12222234 57888887         33455544333333 47888888888888887665


Q ss_pred             hccc-ccCCCCEEEcc--C----CCCCCc-----chHhhhcCCCCCEEEcccCcCcccccccccC-CCCCCeEeccCCcc
Q 045449          397 VTFS-QLQTLQAFDLT--R----NKLAGP-----ITDELCHLARLHSLVLQGNKFSGSIPSCLGN-LTSVRVLYLGLNIF  463 (823)
Q Consensus       397 ~~~~-~l~~L~~L~Ls--~----N~l~~~-----~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~-l~~L~~L~Ls~N~l  463 (823)
                      ..+. .+++|+.|+|+  +    |.+++.     ++..+..+++|+.|+|++ .+++..+..+.. +++|+.|+|++|.+
T Consensus       390 ~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i  468 (594)
T 2p1m_B          390 ITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGD  468 (594)
T ss_dssp             HHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCS
T ss_pred             HHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCC
Confidence            5554 57888888888  4    566632     223356778888888876 666665555655 78888888888888


Q ss_pred             ccccchhh-hccCCCcEEeccccccccccCc-cccCCCCCcEEEcccCCCC
Q 045449          464 TSVLSSTI-WNLKDILFIDVSSNFLDGPLSL-DIGNLKVVIGLDFSRNNLS  512 (823)
Q Consensus       464 ~~~~p~~~-~~l~~L~~LdLs~N~l~g~~p~-~~~~l~~L~~L~ls~N~l~  512 (823)
                      ++..+..+ ..+++|+.|+|++|.+++.... ....++.|+.|++++|+++
T Consensus       469 ~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~  519 (594)
T 2p1m_B          469 SDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS  519 (594)
T ss_dssp             SHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred             cHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence            77666555 6688888888888888665443 3455788888888888774

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.95  E-value=3e-28  Score=277.56  Aligned_cols=234  Identities=20%  Similarity=0.163  Sum_probs=164.4

Q ss_pred             CCcEEEccCCcccccCCcccccCCCCccEEEeeccccccccCccccCCCCCCeEEeecccccccCCCccCCCcccCcccc
Q 045449          229 ALKEISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSITNSSKLSDLELGENLFSGFIPNTIGNLRNLEFGNI  308 (823)
Q Consensus       229 ~L~~L~Ls~N~l~g~lp~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  308 (823)
                      +|++|+|++|.+++..|..+. .+++|++|+|++|.+++..|  +..+++|++|+|++|.+++..+.     ++|++|++
T Consensus        35 ~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~-----~~L~~L~L  106 (487)
T 3oja_A           35 NVKELDLSGNPLSQISAADLA-PFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVG-----PSIETLHA  106 (487)
T ss_dssp             GCCEEECCSSCCCCCCGGGGT-TCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEEC-----TTCCEEEC
T ss_pred             CccEEEeeCCcCCCCCHHHHh-CCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCC-----CCcCEEEC
Confidence            444444444444432222222 24445555555555444333  45555555555555555543321     55666666


Q ss_pred             cCccccCCCCcccccccccCCCCceEEEeecCCCCccCCccccccccccceEEecCCcceeccCcccc-CcccccEEEcc
Q 045449          309 ADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGILPKSIGNFSLSLETILMANCSISGNIPQVVG-NLSNLLVLELG  387 (823)
Q Consensus       309 ~~N~l~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~p~~~~-~l~~L~~L~Ls  387 (823)
                      ++|.+++.+     +   ..+++|+.|+|++|.+++..|..++.+ ++|++|+|++|.+++..|..+. .+++|++|+|+
T Consensus       107 ~~N~l~~~~-----~---~~l~~L~~L~L~~N~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls  177 (487)
T 3oja_A          107 ANNNISRVS-----C---SRGQGKKNIYLANNKITMLRDLDEGCR-SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ  177 (487)
T ss_dssp             CSSCCCCEE-----E---CCCSSCEEEECCSSCCCSGGGBCGGGG-SSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECT
T ss_pred             cCCcCCCCC-----c---cccCCCCEEECCCCCCCCCCchhhcCC-CCCCEEECCCCCCCCcChHHHhhhCCcccEEecC
Confidence            666665541     1   234667788888888887777777777 6888888888888888887776 78899999999


Q ss_pred             cCcCCCCchhcccccCCCCEEEccCCCCCCcchHhhhcCCCCCEEEcccCcCcccccccccCCCCCCeEeccCCccc-cc
Q 045449          388 GNNLTGPIPVTFSQLQTLQAFDLTRNKLAGPITDELCHLARLHSLVLQGNKFSGSIPSCLGNLTSVRVLYLGLNIFT-SV  466 (823)
Q Consensus       388 ~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~-~~  466 (823)
                      +|.+++..+  +..+++|++|+|++|+|++.+| .+..+++|+.|+|++|.|++ +|..+..+++|+.|++++|.++ +.
T Consensus       178 ~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~  253 (487)
T 3oja_A          178 YNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGT  253 (487)
T ss_dssp             TSCCCEEEC--CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHH
T ss_pred             CCccccccc--cccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcc
Confidence            999986532  3458899999999999997555 48889999999999999995 7888899999999999999998 77


Q ss_pred             cchhhhccCCCcEEecc
Q 045449          467 LSSTIWNLKDILFIDVS  483 (823)
Q Consensus       467 ~p~~~~~l~~L~~LdLs  483 (823)
                      +|..+..++.|+.++++
T Consensus       254 ~~~~~~~l~~L~~l~~~  270 (487)
T 3oja_A          254 LRDFFSKNQRVQTVAKQ  270 (487)
T ss_dssp             HHHHHTTCHHHHHHHHH
T ss_pred             hHHHHHhCCCCcEEecc
Confidence            88888888888888886

>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*

Probab=99.95  E-value=3.2e-29  Score=266.97  Aligned_cols=149  Identities=28%  Similarity=0.336  Sum_probs=112.9

Q ss_pred             ccCCccceeeccC----------CeEEEEEEehHhhHHHHHHHHHHHHHHhhcchhhHHH--------------------
Q 045449          628 DRFSENNLIGIGN----------GMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVK--------------------  677 (823)
Q Consensus       628 ~~f~~~~~lg~g~----------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~--------------------  677 (823)
                      +++...+.||+|+          |+.||||++....... ..++.|+..+.+++|||||+                    
T Consensus         3 r~i~L~~~iG~G~fG~Vy~~~~~g~~VAvK~l~~~~~~~-~~~e~Ei~~~~~l~HpNIv~l~g~~~~~~~~~~~~~lV~E   81 (303)
T 3hmm_A            3 RTIVLQESIGKGRFGEVWRGKWRGEEVAVKIFSSREERS-WFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVSD   81 (303)
T ss_dssp             GGEEEEEEEEECSSSEEEEEEETTEEEEEEEECGGGHHH-HHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEEEE
T ss_pred             cEEEEEEEEeeCCCeEEEEEEECCEEEEEEEECccchhh-HHHHHHHHHHhcCCCCCCCcEEEEEEecCCCceEEEEEec
Confidence            3455667888886          6789999997654322 33456677778899999998                    


Q ss_pred             -----------------------HHHHHHHHhhhcCCC--------CEEeccCCCCCEEeCCCCcEEEeecccccccCCC
Q 045449          678 -----------------------IISSSLEYLHFGHSI--------PIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGE  726 (823)
Q Consensus       678 -----------------------~~~~~l~~L~~~h~~--------~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~  726 (823)
                                             ++.|++.+|+|+|+.        +||||||||+|||++.++.+||+|||+|+.....
T Consensus        82 y~~~gsL~~~l~~~~l~~~~~~~i~~~ia~gl~ylH~~~~~~~~~~~IiHRDlKp~NILl~~~~~~Ki~DFGla~~~~~~  161 (303)
T 3hmm_A           82 YHEHGSLFDYLNRYTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSA  161 (303)
T ss_dssp             CCTTCBHHHHHHHCCBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCCEECSCCCGGGEEECTTSCEEECCCTTCEEEETT
T ss_pred             CCCCCcHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhhhccCCCCEeeccCCcccEEECCCCCEEEEeCCCCccccCC
Confidence                                   244666666666654        9999999999999999999999999999876544


Q ss_pred             Ccc--ccccccccCCCcCcccccCCC------ccccccceehhhhhhccccCCCCCcCC
Q 045449          727 DQL--SKQTQTLATIGYMAPEYGTKG------RVSTRGDVCSFGIISGGKETRSMTVGE  777 (823)
Q Consensus       727 ~~~--~~~~~~~gt~~y~aPE~~~~~------~~~~~~Dv~S~Gvv~~~~~~~~~~~~~  777 (823)
                      ...  ......+||+.|||||++.+.      .|+.++|||||||++||+++|..|+..
T Consensus       162 ~~~~~~~~~~~~GT~~ymAPE~l~~~~~~~~~~~~~k~DVwS~Gvvl~El~tg~~~~~~  220 (303)
T 3hmm_A          162 TDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGI  220 (303)
T ss_dssp             TTEESCC-----CCGGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHHTBCBTTB
T ss_pred             CCceeeecccccccccccCHHHhcccccccCCccChhHhhhhHHHHHHHHHHCCCCCCc
Confidence            322  122346899999999998654      478899999999999999999876643

>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A

Probab=99.94  E-value=2e-28  Score=280.76  Aligned_cols=146  Identities=25%  Similarity=0.243  Sum_probs=123.4

Q ss_pred             ccCCccceeeccC------------CeEEEEEEehHhhH------HHHHHHHHHHHHHhhcchhhHHH------------
Q 045449          628 DRFSENNLIGIGN------------GMEVAVKVFHQQYE------RALKSFEDECEVRKRIRHRNLVK------------  677 (823)
Q Consensus       628 ~~f~~~~~lg~g~------------~~~vavK~~~~~~~------~~~~~~~~E~~~l~~l~h~niv~------------  677 (823)
                      ++|...+.||+|+            |+.||||++.+...      ........++++++.++|||||+            
T Consensus       189 ddf~i~k~LG~G~fG~V~la~~~~tg~~~AiK~i~K~~i~~~~~~~~~~~E~~~l~ll~~~~HP~IV~l~~~f~~~~~ly  268 (689)
T 3v5w_A          189 NDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKLS  268 (689)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEECSSEEE
T ss_pred             HHeEEEEEEecccCeEEEEEEECCCCCEEEEEEEeHHHcchhhhHHHHHHHHHHHHHHhhCCCCCEeEEEEEEEECCEEE
Confidence            5788889999997            67799999975431      12223344567777889999998            


Q ss_pred             ----------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCcc
Q 045449          678 ----------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQL  729 (823)
Q Consensus       678 ----------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~  729 (823)
                                                  +++|++.+|+|+|+.|||||||||+|||++.+|++||+|||+|+......  
T Consensus       269 lVmEy~~GGdL~~~l~~~~~l~E~~a~~y~~qIl~aL~yLH~~gIiHRDLKPeNILld~~G~vKL~DFGlA~~~~~~~--  346 (689)
T 3v5w_A          269 FILDLMNGGDLHYHLSQHGVFSEADMRFYAAEIILGLEHMHNRFVVYRDLKPANILLDEHGHVRISDLGLACDFSKKK--  346 (689)
T ss_dssp             EEECCCCSCBHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHTTTEECCCCSGGGEEECTTSCEEECCCTTCEECSSCC--
T ss_pred             EEEecCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCchHHeEEeCCCCEEecccceeeecCCCC--
Confidence                                        47899999999999999999999999999999999999999999765432  


Q ss_pred             ccccccccCCCcCcccccCC-CccccccceehhhhhhccccCCCCCcCC
Q 045449          730 SKQTQTLATIGYMAPEYGTK-GRVSTRGDVCSFGIISGGKETRSMTVGE  777 (823)
Q Consensus       730 ~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~  777 (823)
                        ..+.+||+.|||||++.+ ..|+.++||||+||++|+|++|..||.+
T Consensus       347 --~~t~~GTp~YmAPEvl~~~~~y~~~vDiWSLGvilYEmLtG~~PF~~  393 (689)
T 3v5w_A          347 --PHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQ  393 (689)
T ss_dssp             --CCSCCSCGGGCCHHHHSTTCCCCTHHHHHHHHHHHHHHHHSSCTTCG
T ss_pred             --CCCccCCcCccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCC
Confidence              345689999999999965 5799999999999999999999999965

>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*

Probab=99.94  E-value=1.1e-28  Score=268.84  Aligned_cols=151  Identities=23%  Similarity=0.236  Sum_probs=123.6

Q ss_pred             HHhccCCccceeeccC---------------CeEEEEEEehHhhHHHHHHHHHHHHHHhhc-chhhHHH-----------
Q 045449          625 RATDRFSENNLIGIGN---------------GMEVAVKVFHQQYERALKSFEDECEVRKRI-RHRNLVK-----------  677 (823)
Q Consensus       625 ~at~~f~~~~~lg~g~---------------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~-----------  677 (823)
                      +..++|...+.||+|+               ++.||||++.....  ..++.+|++++.++ +|||||+           
T Consensus        18 ~l~~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~--~~~~~~E~~~l~~~~~h~nIv~l~~~~~~~~~~   95 (361)
T 4f9c_A           18 QLSNVFKIEDKIGEGTFSSVYLATAQLQVGPEEKIALKHLIPTSH--PIRIAAELQCLTVAGGQDNVMGVKYCFRKNDHV   95 (361)
T ss_dssp             GGGGTCEEEEEEEECSSEEEEEEEEEBTTSCEEEEEEEEECTTSC--HHHHHHHHHHHHHTCSBTTBCCCSEEEEETTEE
T ss_pred             CccCcEEEEEEEecccCcEEEEEEEcccCCCCCEEEEEEEccccC--HHHHHHHHHHHHHhcCCCCCceEEEEEEECCEE
Confidence            4567899999999996               34599998865432  24688999999998 6999998           


Q ss_pred             --------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCC-CcEEEeecccccccCCCCc--
Q 045449          678 --------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDED-MVAHISDFGIAKLLSGEDQ--  728 (823)
Q Consensus       678 --------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~-~~~kl~DfGla~~~~~~~~--  728 (823)
                                                ++.|++.+|+|+|+.||+||||||+|||++.+ +.+||+|||+|+.......  
T Consensus        96 ~lvmE~~~g~~L~~~~~~l~~~~~~~~~~qll~al~ylH~~gIiHRDiKPeNiLl~~~~~~~kl~DFGla~~~~~~~~~~  175 (361)
T 4f9c_A           96 VIAMPYLEHESFLDILNSLSFQEVREYMLNLFKALKRIHQFGIVHRDVKPSNFLYNRRLKKYALVDFGLAQGTHDTKIEL  175 (361)
T ss_dssp             EEEEECCCCCCHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEETTTTEEEECCCTTCEECTTCSCGG
T ss_pred             EEEEeCCCcccHHHHHcCCCHHHHHHHHHHHHHHHHHHHHCCeEeCcCCHHHeEEeCCCCeEEECcCCCCcccCCccccc
Confidence                                      47899999999999999999999999999876 7999999999986543211  


Q ss_pred             ------------------------cccccccccCCCcCcccccCCC-ccccccceehhhhhhccccCCCCCcCC
Q 045449          729 ------------------------LSKQTQTLATIGYMAPEYGTKG-RVSTRGDVCSFGIISGGKETRSMTVGE  777 (823)
Q Consensus       729 ------------------------~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~S~Gvv~~~~~~~~~~~~~  777 (823)
                                              ....+..+||+.|||||++.+. .|+.++||||+||++|+|++|+.||..
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~y~~~~DiWSlG~il~ell~G~~Pf~~  249 (361)
T 4f9c_A          176 LKFVQSEAQQERCSQNKCSICLSRRQQVAPRAGTPGFRAPEVLTKCPNQTTAIDMWSAGVIFLSLLSGRYPFYK  249 (361)
T ss_dssp             GGGC--------------------------CCCCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHHHTCSSSSC
T ss_pred             cccccccccccccccccccccccccccccccccCccccCHHHHcCCCCCCCccchhhhHHHHHHHHHCCCCCCC
Confidence                                    0112345799999999998775 489999999999999999999999854

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.94  E-value=1.4e-26  Score=243.28  Aligned_cols=219  Identities=21%  Similarity=0.284  Sum_probs=144.1

Q ss_pred             CCCccceeeeeCCCCCcEEEEEcCCCCCccccCcccCCCCCCcEEEccCCCCCCCCCCCCCCCCCCCEEECCCCcCcCCC
Q 045449           37 TSVCIWIGITCDVNSHRVIGLNISSFNLQGTITPQLGNLSSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQLFGSL  116 (823)
Q Consensus        37 ~~~c~w~gv~c~~~~~~v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~  116 (823)
                      .++|.|.|+.|+.. ..++.+++++++++. +|..+.  ++|++|+|++|+|++..+..|.++++|++|+|++|.|+...
T Consensus         2 ~~~C~~~~~~C~c~-~~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~   77 (270)
T 2o6q_A            2 EALCKKDGGVCSCN-NNKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLP   77 (270)
T ss_dssp             CCCBGGGTCSBEEE-TTTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCC
T ss_pred             CccCCCCCCCCEeC-CCCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeC
Confidence            47899999998643 346789999999884 666554  67899999999998777778889999999999999988776


Q ss_pred             chhhhcCCCCcEEecccccccCccCccccCCCCCCccccccceeeeccceeeccCccccccchhhHHHHHhhcCCCcccC
Q 045449          117 SSFIFNMSSMTTIDLSINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEIGNLTKLKEIISTITNSTVCEI  196 (823)
Q Consensus       117 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~~l~~n~~~~~i  196 (823)
                      +..|.++++|++|+|++|++++..+..       |..+++|++|+|++|++++..+.                       
T Consensus        78 ~~~~~~l~~L~~L~l~~n~l~~~~~~~-------~~~l~~L~~L~l~~n~l~~~~~~-----------------------  127 (270)
T 2o6q_A           78 AGIFKELKNLETLWVTDNKLQALPIGV-------FDQLVNLAELRLDRNQLKSLPPR-----------------------  127 (270)
T ss_dssp             TTTTSSCTTCCEEECCSSCCCCCCTTT-------TTTCSSCCEEECCSSCCCCCCTT-----------------------
T ss_pred             hhhhcCCCCCCEEECCCCcCCcCCHhH-------cccccCCCEEECCCCccCeeCHH-----------------------
Confidence            777788888888888888887433322       36777788888887777643222                       


Q ss_pred             CcccCCcchhhhhccccccccCCccccccCCCCCcEEEccCCcccccCCcccccCCCCccEEEeeccccccccCccccCC
Q 045449          197 PREIGNLPYLARLALATNNLVGVVPVTIFNMSALKEISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSITNS  276 (823)
Q Consensus       197 p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~lp~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l  276 (823)
                        .|..+++|++|+|++|++++..+..|..++                         +|++|+|++|++++..+..|.++
T Consensus       128 --~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-------------------------~L~~L~L~~n~l~~~~~~~~~~l  180 (270)
T 2o6q_A          128 --VFDSLTKLTYLSLGYNELQSLPKGVFDKLT-------------------------SLKELRLYNNQLKRVPEGAFDKL  180 (270)
T ss_dssp             --TTTTCTTCCEEECCSSCCCCCCTTTTTTCT-------------------------TCCEEECCSSCCSCCCTTTTTTC
T ss_pred             --HhCcCcCCCEEECCCCcCCccCHhHccCCc-------------------------ccceeEecCCcCcEeChhHhccC
Confidence              223334445555555555544444444444                         44555555554444444445555


Q ss_pred             CCCCeEEeecccccccCCCccCCCcccCcccccCccccCC
Q 045449          277 SKLSDLELGENLFSGFIPNTIGNLRNLEFGNIADNYLTSS  316 (823)
Q Consensus       277 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~  316 (823)
                      ++|++|+|++|++++..+..|..+++|+.|+|++|.+...
T Consensus       181 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  220 (270)
T 2o6q_A          181 TELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCT  220 (270)
T ss_dssp             TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCS
T ss_pred             CCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCC
Confidence            5555555555555555444555555555566655555543

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.94  E-value=2.3e-29  Score=295.43  Aligned_cols=423  Identities=14%  Similarity=0.116  Sum_probs=300.6

Q ss_pred             CcEEEEEcCCCCCccc---cCc------------ccCCCCCCcEEEccCCCCCCCCCCCCC-CCCCCCEEECCCC-cCcC
Q 045449           52 HRVIGLNISSFNLQGT---ITP------------QLGNLSSLQTLDLSHNKLSGNIPSSIF-NMHTLKLLDFSDN-QLFG  114 (823)
Q Consensus        52 ~~v~~L~L~~~~l~g~---~~~------------~l~~l~~L~~L~Ls~N~l~g~~p~~~~-~l~~L~~L~Ls~N-~l~~  114 (823)
                      .+++.|+|+++.....   .|.            ....+++|++|+|++|.+++..+..+. .+++|++|+|++| .++.
T Consensus        66 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~  145 (594)
T 2p1m_B           66 PKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFST  145 (594)
T ss_dssp             TTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEH
T ss_pred             CCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCH
Confidence            4688899988753211   111            124678999999999999877666665 6899999999999 5654


Q ss_pred             C-CchhhhcCCCCcEEecccccccCccCccccCCCCCCccccccceeeeccceeeccCccccccchhhHHHHHhhcCCCc
Q 045449          115 S-LSSFIFNMSSMTTIDLSINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEIGNLTKLKEIISTITNSTV  193 (823)
Q Consensus       115 ~-~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~~l~~n~~~  193 (823)
                      . ++..+.++++|++|+|++|.+++..+..+..++   ..+++|++|+|++|.  +.+..     ..+..+         
T Consensus       146 ~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~---~~~~~L~~L~l~~~~--~~~~~-----~~l~~l---------  206 (594)
T 2p1m_B          146 DGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFP---DTYTSLVSLNISCLA--SEVSF-----SALERL---------  206 (594)
T ss_dssp             HHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSC---TTCCCCCEEECTTCC--SCCCH-----HHHHHH---------
T ss_pred             HHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHh---hcCCcCcEEEecccC--CcCCH-----HHHHHH---------
Confidence            3 455566899999999999999876666553333   467899999999997  22221     112222         


Q ss_pred             ccCCcccCCcchhhhhccccc-cccCCccccccCCCCCcEEEccCC-------cccccCCcccccCCCCccEE-Eeeccc
Q 045449          194 CEIPREIGNLPYLARLALATN-NLVGVVPVTIFNMSALKEISLLNN-------SLSGSLPSRIDLSLPNVETL-NLGINS  264 (823)
Q Consensus       194 ~~ip~~l~~l~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~Ls~N-------~l~g~lp~~~~~~l~~L~~L-~Ls~N~  264 (823)
                            +.++++|++|++++| .+.+ +|..+.++++|++|+++.+       .+++ ++..+. .+++|+.| .+....
T Consensus       207 ------~~~~~~L~~L~L~~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-l~~~l~-~~~~L~~Ls~~~~~~  277 (594)
T 2p1m_B          207 ------VTRCPNLKSLKLNRAVPLEK-LATLLQRAPQLEELGTGGYTAEVRPDVYSG-LSVALS-GCKELRCLSGFWDAV  277 (594)
T ss_dssp             ------HHHCTTCCEEECCTTSCHHH-HHHHHHHCTTCSEEECSBCCCCCCHHHHHH-HHHHHH-TCTTCCEEECCBTCC
T ss_pred             ------HHhCCCCcEEecCCCCcHHH-HHHHHhcCCcceEcccccccCccchhhHHH-HHHHHh-cCCCcccccCCcccc
Confidence                  123567889999988 4444 7778888899999985544       4442 444443 48889988 444333


Q ss_pred             cccccCccccCCCCCCeEEeecccccccCC-CccCCCcccCcccccCccccCCCCcccccccccCCCCceEEEeec----
Q 045449          265 FSGTIPSSITNSSKLSDLELGENLFSGFIP-NTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTG----  339 (823)
Q Consensus       265 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~l~~L~~L~Ls~----  339 (823)
                      . +.+|..+..+++|++|+|++|.+++... ..+..+++|+.|++++| ++..    .+......+++|+.|++++    
T Consensus       278 ~-~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~----~l~~l~~~~~~L~~L~L~~~~~~  351 (594)
T 2p1m_B          278 P-AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDA----GLEVLASTCKDLRELRVFPSEPF  351 (594)
T ss_dssp             G-GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHH----HHHHHHHHCTTCCEEEEECSCTT
T ss_pred             h-hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHH----HHHHHHHhCCCCCEEEEecCccc
Confidence            2 3456666678899999999998775432 33567899999999988 4321    1222334588999999843    


Q ss_pred             -----CCCCccCCccccc-cccccceEEecCCcceeccCcccc-CcccccEEEcc--c----CcCCCC-----chhcccc
Q 045449          340 -----NPLDGILPKSIGN-FSLSLETILMANCSISGNIPQVVG-NLSNLLVLELG--G----NNLTGP-----IPVTFSQ  401 (823)
Q Consensus       340 -----N~l~~~~p~~~~~-~~~~L~~L~L~~N~l~~~~p~~~~-~l~~L~~L~Ls--~----N~l~g~-----~p~~~~~  401 (823)
                           +.+++.....+.. + ++|++|.++.|.+++..+..+. .+++|+.|+|+  +    |++++.     ++..+..
T Consensus       352 g~~~~~~l~~~~l~~l~~~~-~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~  430 (594)
T 2p1m_B          352 VMEPNVALTEQGLVSVSMGC-PKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEH  430 (594)
T ss_dssp             CSSCSSCCCHHHHHHHHHHC-TTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHH
T ss_pred             ccccCCCCCHHHHHHHHHhc-hhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhh
Confidence                 5555433333332 4 6899999999999877666665 58999999999  4    666632     2233677


Q ss_pred             cCCCCEEEccCCCCCCcchHhhhc-CCCCCEEEcccCcCcccccccc-cCCCCCCeEeccCCccccccch-hhhccCCCc
Q 045449          402 LQTLQAFDLTRNKLAGPITDELCH-LARLHSLVLQGNKFSGSIPSCL-GNLTSVRVLYLGLNIFTSVLSS-TIWNLKDIL  478 (823)
Q Consensus       402 l~~L~~L~Ls~N~l~~~~p~~~~~-l~~L~~L~Ls~N~l~g~~p~~~-~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~  478 (823)
                      +++|+.|+|++ .+++..+..+.. +++|+.|+|++|.+++..+..+ ..+++|+.|+|++|.+++.... .+..+++|+
T Consensus       431 ~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~  509 (594)
T 2p1m_B          431 CKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMR  509 (594)
T ss_dssp             CTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSS
T ss_pred             CCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCC
Confidence            89999999987 787776666665 8999999999999987766655 6789999999999999765554 445689999


Q ss_pred             EEeccccccccccCccc-cCCCCCcEEEcccCC
Q 045449          479 FIDVSSNFLDGPLSLDI-GNLKVVIGLDFSRNN  510 (823)
Q Consensus       479 ~LdLs~N~l~g~~p~~~-~~l~~L~~L~ls~N~  510 (823)
                      .|++++|.++......+ ..++.|+...+..+.
T Consensus       510 ~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~  542 (594)
T 2p1m_B          510 SLWMSSCSVSFGACKLLGQKMPKLNVEVIDERG  542 (594)
T ss_dssp             EEEEESSCCBHHHHHHHHHHCTTEEEEEECSSS
T ss_pred             EEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCC
Confidence            99999999965544444 456777666665543

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=99.94  E-value=4.8e-28  Score=279.78  Aligned_cols=149  Identities=23%  Similarity=0.310  Sum_probs=131.5

Q ss_pred             hccCCccceeeccC------------CeEEEEEEehHhhHHHHHHHHHHHHHHhhcchhhHHH-----------------
Q 045449          627 TDRFSENNLIGIGN------------GMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVK-----------------  677 (823)
Q Consensus       627 t~~f~~~~~lg~g~------------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~-----------------  677 (823)
                      .++|...+.||+|+            |+.||||++........+.+.+|+++|++++|||||+                 
T Consensus       156 l~~Y~i~~~lG~G~fg~V~~~~~~~tg~~~AiK~i~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~~~iv~E~  235 (573)
T 3uto_A          156 LDHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTLVNLHDAFEDDNEMVMIYEF  235 (573)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHHHTCCTTBCCEEEEEECSSEEEEEEEC
T ss_pred             ccccEEEEEEeeccCeEEEEEEECCCCCEEEEEEEeccchhhHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEee
Confidence            36788889999986            6779999997666566678999999999999999998                 


Q ss_pred             ------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCC--CcEEEeecccccccCCCCcccc
Q 045449          678 ------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDED--MVAHISDFGIAKLLSGEDQLSK  731 (823)
Q Consensus       678 ------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~--~~~kl~DfGla~~~~~~~~~~~  731 (823)
                                              +++|++++|+|+|+++|+||||||+|||++.+  +.+||+|||+|+.+.....   
T Consensus       236 ~~gg~L~~~i~~~~~~l~e~~~~~~~~qi~~al~ylH~~~iiHRDlKp~Nill~~~~~~~vKl~DFG~a~~~~~~~~---  312 (573)
T 3uto_A          236 MSGGELFEKVADEHNKMSEDEAVEYMRQVCKGLCHMHENNYVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDPKQS---  312 (573)
T ss_dssp             CCCCBHHHHHTCTTSCEEHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESSSSCCCEEECCCSSCEECCTTSE---
T ss_pred             cCCCcHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHCCeeeccCChhhccccCCCCCCEEEeeccceeEccCCCc---
Confidence                                    46899999999999999999999999999854  8999999999998754432   


Q ss_pred             ccccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCC
Q 045449          732 QTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       732 ~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      ....+||+.|||||++.+..|+.++||||+||++|+|++|..||.+.
T Consensus       313 ~~~~~GT~~y~APEv~~~~~y~~~~DiWSlGvilyeml~G~~Pf~~~  359 (573)
T 3uto_A          313 VKVTTGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSGLSPFGGE  359 (573)
T ss_dssp             EEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCS
T ss_pred             eeeeEECccccCHHHhCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCc
Confidence            34568999999999999999999999999999999999999999764

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.93  E-value=1e-25  Score=237.38  Aligned_cols=229  Identities=17%  Similarity=0.191  Sum_probs=106.1

Q ss_pred             EEEccCCcccccCCcccccCCCCccEEEeeccccccccCccccCCCCCCeEEeecccccccCCCccCCCcccCcccccCc
Q 045449          232 EISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSITNSSKLSDLELGENLFSGFIPNTIGNLRNLEFGNIADN  311 (823)
Q Consensus       232 ~L~Ls~N~l~g~lp~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N  311 (823)
                      .++..+..++ .+|..+.   ++|++|+|++|++++..+..|.++++|++|+|++|++++..+..|..+++|++|+|++|
T Consensus        11 ~~~c~~~~l~-~ip~~l~---~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n   86 (276)
T 2z62_A           11 TYQCMELNFY-KIPDNLP---FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN   86 (276)
T ss_dssp             EEECTTSCCS-SCCSSSC---TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred             eEEecCCCcc-ccCCCCC---CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCC
Confidence            3444555554 4554332   34555555555555544445555555555555555555444444444444444333333


Q ss_pred             cccCCCCcccccccccCCCCceEEEeecCCCCccCCccccccccccceEEecCCcceeccCccccCcccccEEEcccCcC
Q 045449          312 YLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGILPKSIGNFSLSLETILMANCSISGNIPQVVGNLSNLLVLELGGNNL  391 (823)
Q Consensus       312 ~l~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l  391 (823)
                      .+                             ++..|..+.++ .+|++|++++|.+++..+..+..+++|++|++++|++
T Consensus        87 ~l-----------------------------~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  136 (276)
T 2z62_A           87 PI-----------------------------QSLALGAFSGL-SSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI  136 (276)
T ss_dssp             CC-----------------------------CEECTTTTTTC-TTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCC
T ss_pred             cc-----------------------------CccChhhhcCC-ccccEEECCCCCccccCchhcccCCCCCEEECcCCcc
Confidence            33                             33223333333 2333333333333333333344444444444444444


Q ss_pred             CCC-chhcccccCCCCEEEccCCCCCCcchHhhhcCCCCCEEEcccCcCcccccccccCCCCCC-eEeccCCccccccch
Q 045449          392 TGP-IPVTFSQLQTLQAFDLTRNKLAGPITDELCHLARLHSLVLQGNKFSGSIPSCLGNLTSVR-VLYLGLNIFTSVLSS  469 (823)
Q Consensus       392 ~g~-~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~-~L~Ls~N~l~~~~p~  469 (823)
                      ++. +|..|..+++|++|+|++|++++..+..+..+.+|+                     .|. .|++++|.+++..+.
T Consensus       137 ~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~---------------------~l~l~L~ls~n~l~~~~~~  195 (276)
T 2z62_A          137 QSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP---------------------LLNLSLDLSLNPMNFIQPG  195 (276)
T ss_dssp             CCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCT---------------------TCCEEEECCSSCCCEECTT
T ss_pred             ceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhcc---------------------ccceeeecCCCcccccCcc
Confidence            432 344444444444444444444444333333333333                     000 445555555443333


Q ss_pred             hhhccCCCcEEeccccccccccCccccCCCCCcEEEcccCCCCCCCC
Q 045449          470 TIWNLKDILFIDVSSNFLDGPLSLDIGNLKVVIGLDFSRNNLSGDIP  516 (823)
Q Consensus       470 ~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~ip  516 (823)
                      .+. ..+|+.|++++|.+++..+..+..++.|+.|++++|++++..|
T Consensus       196 ~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  241 (276)
T 2z62_A          196 AFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  241 (276)
T ss_dssp             SSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred             ccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence            222 2245555555555555444445556666666666666665544

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.93  E-value=1.8e-25  Score=235.50  Aligned_cols=209  Identities=23%  Similarity=0.220  Sum_probs=155.8

Q ss_pred             CceEEEeecCCCCccCCccccccccccceEEecCCcceeccCccccCcccccEEEcccCcCCCCchhcccccCCCCEEEc
Q 045449          331 KLKVLIVTGNPLDGILPKSIGNFSLSLETILMANCSISGNIPQVVGNLSNLLVLELGGNNLTGPIPVTFSQLQTLQAFDL  410 (823)
Q Consensus       331 ~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L  410 (823)
                      +|+.|++++|.+++..+..|..+ ++|++|++++|++++..+..|.++++|++|+|++|++++..+..|.++++|++|++
T Consensus        29 ~l~~L~ls~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  107 (276)
T 2z62_A           29 STKNLDLSFNPLRHLGSYSFFSF-PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (276)
T ss_dssp             TCCEEECTTCCCCEECTTTTTTC-TTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             CccEEECCCCcccccCHhHhccc-cCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence            35555555555555544455555 46666666666666666667777777777788877777666677777788888888


Q ss_pred             cCCCCCCcchHhhhcCCCCCEEEcccCcCccc-ccccccCCCCCCeEeccCCccccccchhhhccCCCc----EEecccc
Q 045449          411 TRNKLAGPITDELCHLARLHSLVLQGNKFSGS-IPSCLGNLTSVRVLYLGLNIFTSVLSSTIWNLKDIL----FIDVSSN  485 (823)
Q Consensus       411 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~-~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~----~LdLs~N  485 (823)
                      ++|++++..+..+..+++|++|++++|.+++. +|..+.++++|+.|+|++|++++..+..+..+..|+    .|++++|
T Consensus       108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n  187 (276)
T 2z62_A          108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN  187 (276)
T ss_dssp             TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred             CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence            88888776666677888888888888888763 588888888888888888888888788887777777    8999999


Q ss_pred             ccccccCccccCCCCCcEEEcccCCCCCCCCCcccCccCCCCCCCCCCCcccccCCcccCCCCC
Q 045449          486 FLDGPLSLDIGNLKVVIGLDFSRNNLSGDIPITIGEGEIPRGGPFANLTAKSFMGNELLCGLPD  549 (823)
Q Consensus       486 ~l~g~~p~~~~~l~~L~~L~ls~N~l~g~ip~~~~~g~ip~~~~~~~~~~~~~~~n~~~c~~~~  549 (823)
                      .+++..+..+.. ..|+.|++++|++++..+..+        ..+..+..+.+.+|++.|..+.
T Consensus       188 ~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~--------~~l~~L~~L~l~~N~~~c~c~~  242 (276)
T 2z62_A          188 PMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIF--------DRLTSLQKIWLHTNPWDCSCPR  242 (276)
T ss_dssp             CCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTT--------TTCCSCCEEECCSSCBCCCTTT
T ss_pred             cccccCccccCC-CcccEEECCCCceeecCHhHh--------cccccccEEEccCCcccccCCc
Confidence            999776655544 489999999999995433222        2356778889999999998664

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.93  E-value=1.6e-25  Score=235.37  Aligned_cols=228  Identities=22%  Similarity=0.270  Sum_probs=138.3

Q ss_pred             cchhhhhccccccccCCccccccCCCCCcEEEccCCcccccCCcccccCCCCccEEEeeccccccccCccccCCCCCCeE
Q 045449          203 LPYLARLALATNNLVGVVPVTIFNMSALKEISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSITNSSKLSDL  282 (823)
Q Consensus       203 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~lp~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  282 (823)
                      +..+..+++..+.+...  ..+..+++|+.|++++|.++ .++. +. .+++|++|+|++|++++.  +.+..+++|++|
T Consensus        18 ~~~l~~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~-~~~~-l~-~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L   90 (272)
T 3rfs_A           18 FAETIKANLKKKSVTDA--VTQNELNSIDQIIANNSDIK-SVQG-IQ-YLPNVRYLALGGNKLHDI--SALKELTNLTYL   90 (272)
T ss_dssp             HHHHHHHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCC-CCTT-GG-GCTTCCEEECTTSCCCCC--GGGTTCTTCCEE
T ss_pred             HHHHHHHHhcCcccccc--cccccccceeeeeeCCCCcc-cccc-cc-cCCCCcEEECCCCCCCCc--hhhcCCCCCCEE
Confidence            34566777777777654  34567788888888888887 4443 33 378888888888888753  467788888888


Q ss_pred             EeecccccccCCCccCCCcccCcccccCccccCCCCcccccccccCCCCceEEEeecCCCCccCCccccccccccceEEe
Q 045449          283 ELGENLFSGFIPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGILPKSIGNFSLSLETILM  362 (823)
Q Consensus       283 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L  362 (823)
                      +|++|.+++..+..|..+++|++|++++|++++.+     +..+.++++|++|++++|.+++..|..+            
T Consensus        91 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-----~~~~~~l~~L~~L~L~~n~l~~~~~~~~------------  153 (272)
T 3rfs_A           91 ILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLP-----DGVFDKLTNLTYLNLAHNQLQSLPKGVF------------  153 (272)
T ss_dssp             ECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCC-----TTTTTTCTTCCEEECCSSCCCCCCTTTT------------
T ss_pred             ECCCCccCccChhHhcCCcCCCEEECCCCcCCccC-----HHHhccCCCCCEEECCCCccCccCHHHh------------
Confidence            88888888777777777777777777777776652     2335555566666666665554444444            


Q ss_pred             cCCcceeccCccccCcccccEEEcccCcCCCCchhcccccCCCCEEEccCCCCCCcchHhhhcCCCCCEEEcccCcCccc
Q 045449          363 ANCSISGNIPQVVGNLSNLLVLELGGNNLTGPIPVTFSQLQTLQAFDLTRNKLAGPITDELCHLARLHSLVLQGNKFSGS  442 (823)
Q Consensus       363 ~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~  442 (823)
                                   ..+++|++|++++|++++..+..|..+++|++|+|++|++++..+..|..+++|+.|+|++|.+.+.
T Consensus       154 -------------~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~  220 (272)
T 3rfs_A          154 -------------DKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT  220 (272)
T ss_dssp             -------------TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             -------------ccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc
Confidence                         4444455555555555444444444455555555555555544444444555555555555544432


Q ss_pred             ccccccCCCCCCeEeccCCccccccchhhhcc
Q 045449          443 IPSCLGNLTSVRVLYLGLNIFTSVLSSTIWNL  474 (823)
Q Consensus       443 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l  474 (823)
                             ++.|+.|+++.|.++|.+|.+++.+
T Consensus       221 -------~~~l~~l~~~~n~~~g~ip~~~~~~  245 (272)
T 3rfs_A          221 -------CPGIRYLSEWINKHSGVVRNSAGSV  245 (272)
T ss_dssp             -------TTTTHHHHHHHHHTGGGBBCTTSCB
T ss_pred             -------CcHHHHHHHHHHhCCCcccCccccc
Confidence                   2244555555555555555555443

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.93  E-value=7.5e-26  Score=237.86  Aligned_cols=158  Identities=23%  Similarity=0.200  Sum_probs=88.9

Q ss_pred             ccceEEecCCcceeccCccccCcccccEEEcccCcCCCCchhcccccCCCCEEEccCCCCCCcchHhhhcCCCCCEEEcc
Q 045449          356 SLETILMANCSISGNIPQVVGNLSNLLVLELGGNNLTGPIPVTFSQLQTLQAFDLTRNKLAGPITDELCHLARLHSLVLQ  435 (823)
Q Consensus       356 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls  435 (823)
                      +|++|++++|.+++..+..|.++++|++|+|++|++++..+..|..+++|++|+|++|++++..+..|..+++|+.|+|+
T Consensus        86 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~  165 (272)
T 3rfs_A           86 NLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLS  165 (272)
T ss_dssp             TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECC
Confidence            34444444444443444444555555555555555555444445555555555555555555555455555556666666


Q ss_pred             cCcCcccccccccCCCCCCeEeccCCccccccchhhhccCCCcEEeccccccccccCccccCCCCCcEEEcccCCCCCCC
Q 045449          436 GNKFSGSIPSCLGNLTSVRVLYLGLNIFTSVLSSTIWNLKDILFIDVSSNFLDGPLSLDIGNLKVVIGLDFSRNNLSGDI  515 (823)
Q Consensus       436 ~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~i  515 (823)
                      +|++++..|..++.+++|+.|+|++|++++..|..+..+++|+.|++++|.+++..       +.|+.|+++.|+++|.|
T Consensus       166 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~-------~~l~~l~~~~n~~~g~i  238 (272)
T 3rfs_A          166 YNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTC-------PGIRYLSEWINKHSGVV  238 (272)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCT-------TTTHHHHHHHHHTGGGB
T ss_pred             CCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccC-------cHHHHHHHHHHhCCCcc
Confidence            66665555555555666666666666666655555566666666666666665433       34666666677777666


Q ss_pred             CCccc
Q 045449          516 PITIG  520 (823)
Q Consensus       516 p~~~~  520 (823)
                      |.+++
T Consensus       239 p~~~~  243 (272)
T 3rfs_A          239 RNSAG  243 (272)
T ss_dssp             BCTTS
T ss_pred             cCccc
Confidence            66553

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.92  E-value=3.5e-26  Score=250.91  Aligned_cols=183  Identities=15%  Similarity=0.155  Sum_probs=105.1

Q ss_pred             hccccccccCCccccccCCCCCcEEEccCCcccccCCc---ccccCCC-CccEEEeeccccccccCccccCC-----CCC
Q 045449          209 LALATNNLVGVVPVTIFNMSALKEISLLNNSLSGSLPS---RIDLSLP-NVETLNLGINSFSGTIPSSITNS-----SKL  279 (823)
Q Consensus       209 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~lp~---~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~l-----~~L  279 (823)
                      ++++.|++++.+|..+...++|++|+|++|.+++..+.   ..+..++ +|++|+|++|++++..+..+..+     ++|
T Consensus         3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L   82 (362)
T 3goz_A            3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV   82 (362)
T ss_dssp             EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred             cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence            56788888888887777777788888888888744331   2223466 78888888888877666666664     778


Q ss_pred             CeEEeecccccccCCCccCC----C-cccCcccccCccccCCCCcccccccccC-CCCceEEEeecCCCCccCCc----c
Q 045449          280 SDLELGENLFSGFIPNTIGN----L-RNLEFGNIADNYLTSSTPELSFLSSLTN-CKKLKVLIVTGNPLDGILPK----S  349 (823)
Q Consensus       280 ~~L~Ls~N~l~~~~p~~~~~----l-~~L~~L~L~~N~l~~~~~~~~~~~~l~~-l~~L~~L~Ls~N~l~~~~p~----~  349 (823)
                      ++|+|++|++++..+..+..    + ++|++|+|++|.+++..... +...+.. .++|++|+|++|.+++..+.    .
T Consensus        83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~-l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~  161 (362)
T 3goz_A           83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSE-FKQAFSNLPASITSLNLRGNDLGIKSSDELIQI  161 (362)
T ss_dssp             CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHH-HHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred             cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHH-HHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence            88888888877666554333    2 66677777777666542211 1122333 24566666666666543222    2


Q ss_pred             ccccccccceEEecCCcceeccCccccC----c-ccccEEEcccCcCC
Q 045449          350 IGNFSLSLETILMANCSISGNIPQVVGN----L-SNLLVLELGGNNLT  392 (823)
Q Consensus       350 ~~~~~~~L~~L~L~~N~l~~~~p~~~~~----l-~~L~~L~Ls~N~l~  392 (823)
                      +...+.+|++|+|++|++++..+..+..    + ++|++|||++|+++
T Consensus       162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~  209 (362)
T 3goz_A          162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLG  209 (362)
T ss_dssp             HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred             HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCC
Confidence            2222224445555555444433332221    2 34444444444444

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*

Probab=99.92  E-value=5.6e-27  Score=262.22  Aligned_cols=159  Identities=19%  Similarity=0.261  Sum_probs=133.2

Q ss_pred             CHHHHHHHhccCCccceeeccC------------CeEEEEEEehHhhHHH---HHHHHHHHHHHhhcchhhHHH------
Q 045449          619 SYHELLRATDRFSENNLIGIGN------------GMEVAVKVFHQQYERA---LKSFEDECEVRKRIRHRNLVK------  677 (823)
Q Consensus       619 ~~~~l~~at~~f~~~~~lg~g~------------~~~vavK~~~~~~~~~---~~~~~~E~~~l~~l~h~niv~------  677 (823)
                      .+.++...+++|...+.||+|+            ++.||||++.......   .+.+.+|+.++.+++||||++      
T Consensus        65 ~~~~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~  144 (437)
T 4aw2_A           65 KVKQMRLHREDFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDSKWITTLHYAFQ  144 (437)
T ss_dssp             HHHHHSCCGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTTTCCHHHHHHHHHHSCTTTBCCEEEEEE
T ss_pred             hhhcccCChhheEEEEEEEeCCCEEEEEEEEcCCCcEEEEEEEEHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEEEEEe
Confidence            4555566678999999999996            5679999997643221   234899999999999999998      


Q ss_pred             -----------------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccc
Q 045449          678 -----------------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKL  722 (823)
Q Consensus       678 -----------------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~  722 (823)
                                                         +++|++.+|+|+|+.+|+||||||+|||++.++.+||+|||+|+.
T Consensus       145 ~~~~~~lV~Ey~~gg~L~~~l~~~~~~l~e~~~~~~~~qi~~aL~~LH~~giiHrDLKp~NILl~~~g~vkL~DFGla~~  224 (437)
T 4aw2_A          145 DDNNLYLVMDYYVGGDLLTLLSKFEDRLPEEMARFYLAEMVIAIDSVHQLHYVHRDIKPDNILMDMNGHIRLADFGSCLK  224 (437)
T ss_dssp             CSSEEEEEECCCTTCBHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEE
T ss_pred             eCCEEEEEEecCCCCcHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHhCCeEecccCHHHeeEcCCCCEEEcchhhhhh
Confidence                                               467899999999999999999999999999999999999999987


Q ss_pred             cCCCCccccccccccCCCcCcccccC-----CCccccccceehhhhhhccccCCCCCcCCC
Q 045449          723 LSGEDQLSKQTQTLATIGYMAPEYGT-----KGRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       723 ~~~~~~~~~~~~~~gt~~y~aPE~~~-----~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      ...... ......+||+.|+|||++.     .+.|+.++||||+||++|+|++|..||.+.
T Consensus       225 ~~~~~~-~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~~DvwSlGvil~elltG~~Pf~~~  284 (437)
T 4aw2_A          225 LMEDGT-VQSSVAVGTPDYISPEILQAMEGGKGRYGPECDWWSLGVCMYEMLYGETPFYAE  284 (437)
T ss_dssp             CCTTSC-EECCSCCSCGGGCCHHHHHHHHTSCCEECTHHHHHHHHHHHHHHHHSSCTTCCS
T ss_pred             cccCCC-cccccccCCcCeeChHHHhhcccCCCCCCCcCeeHHHHHHHHHHHhCCCCCCCC
Confidence            654332 2234468999999999986     567899999999999999999999999764

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.91  E-value=7.6e-24  Score=222.31  Aligned_cols=184  Identities=21%  Similarity=0.194  Sum_probs=115.8

Q ss_pred             ceEEEeecCCCCccCCccccccccccceEEecCCcceeccCccccCcccccEEEcccCcCCCCchhcccccCCCCEEEcc
Q 045449          332 LKVLIVTGNPLDGILPKSIGNFSLSLETILMANCSISGNIPQVVGNLSNLLVLELGGNNLTGPIPVTFSQLQTLQAFDLT  411 (823)
Q Consensus       332 L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls  411 (823)
                      |+.|++++|.+++..+..|..+ .+|++|++++|.++...+..|.++++|++|+|++|++++..+..|..+++|++|+|+
T Consensus        39 l~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  117 (270)
T 2o6q_A           39 TKKLDLQSNKLSSLPSKAFHRL-TKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLD  117 (270)
T ss_dssp             CSEEECCSSCCSCCCTTSSSSC-TTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECC
T ss_pred             CCEEECcCCCCCeeCHHHhcCC-CCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECC
Confidence            4444444444444444444444 455555555555554444555666666666666666665555556666666666666


Q ss_pred             CCCCCCcchHhhhcCCCCCEEEcccCcCcccccccccCCCCCCeEeccCCccccccchhhhccCCCcEEecccccccccc
Q 045449          412 RNKLAGPITDELCHLARLHSLVLQGNKFSGSIPSCLGNLTSVRVLYLGLNIFTSVLSSTIWNLKDILFIDVSSNFLDGPL  491 (823)
Q Consensus       412 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~~  491 (823)
                      +|++++..+..|..+++|++|+|++|.+++..+..|..+++|+.|+|++|.+++..+..+..+++|+.|+|++|.+++..
T Consensus       118 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  197 (270)
T 2o6q_A          118 RNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVP  197 (270)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             CCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCC
Confidence            66666666666666666777777777666555555666677777777777777666666666777777777777777655


Q ss_pred             CccccCCCCCcEEEcccCCCCCCCC
Q 045449          492 SLDIGNLKVVIGLDFSRNNLSGDIP  516 (823)
Q Consensus       492 p~~~~~l~~L~~L~ls~N~l~g~ip  516 (823)
                      +..+..++.|+.|++++|.+.+..+
T Consensus       198 ~~~~~~l~~L~~L~l~~N~~~c~c~  222 (270)
T 2o6q_A          198 EGAFDSLEKLKMLQLQENPWDCTCN  222 (270)
T ss_dssp             TTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred             HHHhccccCCCEEEecCCCeeCCCc
Confidence            5556677777777777777765443

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*

Probab=99.91  E-value=7.1e-26  Score=244.14  Aligned_cols=162  Identities=24%  Similarity=0.297  Sum_probs=137.2

Q ss_pred             ccccCHHHHHHHhcc----------CCccceeeccC------------CeEEEEEEehHhhHHHHHHHHHHHHHHhhcch
Q 045449          615 IRRFSYHELLRATDR----------FSENNLIGIGN------------GMEVAVKVFHQQYERALKSFEDECEVRKRIRH  672 (823)
Q Consensus       615 ~~~~~~~~l~~at~~----------f~~~~~lg~g~------------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h  672 (823)
                      .+.++++++.++++.          |...+.||.|+            |+.||||++........+.+.+|+.++++++|
T Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~G~~g~V~~a~~~~~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h  101 (321)
T 2c30_A           22 SGVVTHEQFKAALRMVVDQGDPRLLLDSYVKIGEGSTGIVCLAREKHSGRQVAVKMMDLRKQQRRELLFNEVVIMRDYQH  101 (321)
T ss_dssp             ---CCHHHHHHHHHTTSCSSCHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCSHHHHHHHHHHHTTCCC
T ss_pred             CCcCcHHHHHHHHhhccCCCCchhhhhccEEeccCCCeEEEEEEECCCCcEEEEEEEeccchhHHHHHHHHHHHHHhCCC
Confidence            356999999999875          55667899886            67799999976554555779999999999999


Q ss_pred             hhHHH---------------------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEE
Q 045449          673 RNLVK---------------------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAH  713 (823)
Q Consensus       673 ~niv~---------------------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~k  713 (823)
                      |||++                                       ++.|++.+|+|+|+.+|+||||||+||+++.++.+|
T Consensus       102 ~niv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~l~~~~~~~i~~qi~~~L~~LH~~~ivH~Dlkp~NIll~~~~~~k  181 (321)
T 2c30_A          102 FNVVEMYKSYLVGEELWVLMEFLQGGALTDIVSQVRLNEEQIATVCEAVLQALAYLHAQGVIHRDIKSDSILLTLDGRVK  181 (321)
T ss_dssp             TTBCCEEEEEEETTEEEEEECCCCSCBHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTCCEE
T ss_pred             CCcceEEEEEEECCEEEEEEecCCCCCHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEECCCCcEE
Confidence            99998                                       367888999999999999999999999999999999


Q ss_pred             EeecccccccCCCCccccccccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCC
Q 045449          714 ISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       714 l~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      |+|||+++.......  ......||+.|+|||++.+..++.++|||||||+++++++|..||...
T Consensus       182 l~Dfg~~~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~pf~~~  244 (321)
T 2c30_A          182 LSDFGFCAQISKDVP--KRKSLVGTPYWMAPEVISRSLYATEVDIWSLGIMVIEMVDGEPPYFSD  244 (321)
T ss_dssp             ECCCTTCEECCSSSC--CBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTS
T ss_pred             EeeeeeeeecccCcc--ccccccCCccccCHhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Confidence            999999987654322  234567999999999999999999999999999999999999998654

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.91  E-value=8e-26  Score=250.44  Aligned_cols=249  Identities=19%  Similarity=0.250  Sum_probs=171.4

Q ss_pred             cCCcccccCCCCccEEEeeccccccccC----ccccCCCCCCeEEeecc---cccccCCCccCCCcccCcccccCccccC
Q 045449          243 SLPSRIDLSLPNVETLNLGINSFSGTIP----SSITNSSKLSDLELGEN---LFSGFIPNTIGNLRNLEFGNIADNYLTS  315 (823)
Q Consensus       243 ~lp~~~~~~l~~L~~L~Ls~N~l~~~~p----~~~~~l~~L~~L~Ls~N---~l~~~~p~~~~~l~~L~~L~L~~N~l~~  315 (823)
                      .++..+.. +++|++|+|++|+++...+    ..+..+++|++|+|++|   ++++.+|..+..                
T Consensus        23 ~l~~~l~~-~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~----------------   85 (386)
T 2ca6_A           23 SVFAVLLE-DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRL----------------   85 (386)
T ss_dssp             TTSHHHHH-CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHH----------------
T ss_pred             HHHHHHhc-CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHH----------------
Confidence            44444443 6677777777777765433    33556667777777764   344444443310                


Q ss_pred             CCCcccccccccCCCCceEEEeecCCCCc----cCCccccccccccceEEecCCcceeccCcccc----Cc---------
Q 045449          316 STPELSFLSSLTNCKKLKVLIVTGNPLDG----ILPKSIGNFSLSLETILMANCSISGNIPQVVG----NL---------  378 (823)
Q Consensus       316 ~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~----~~p~~~~~~~~~L~~L~L~~N~l~~~~p~~~~----~l---------  378 (823)
                            +...+..+++|++|+|++|.+++    .+|..+..+ ++|++|+|++|.+++..+..+.    .+         
T Consensus        86 ------l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~-~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~  158 (386)
T 2ca6_A           86 ------LLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKH-TPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNA  158 (386)
T ss_dssp             ------HHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHC-TTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             ------HHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhC-CCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccC
Confidence                  11123444555555555555544    244444444 4555555555555433332222    23         


Q ss_pred             ccccEEEcccCcCC-CCch---hcccccCCCCEEEccCCCCC--C---cchHhhhcCCCCCEEEcccCcCc----ccccc
Q 045449          379 SNLLVLELGGNNLT-GPIP---VTFSQLQTLQAFDLTRNKLA--G---PITDELCHLARLHSLVLQGNKFS----GSIPS  445 (823)
Q Consensus       379 ~~L~~L~Ls~N~l~-g~~p---~~~~~l~~L~~L~Ls~N~l~--~---~~p~~~~~l~~L~~L~Ls~N~l~----g~~p~  445 (823)
                      ++|++|+|++|+++ +.+|   ..+..+++|++|+|++|+++  |   ..+..+..+++|+.|+|++|.++    +.+|.
T Consensus       159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~  238 (386)
T 2ca6_A          159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI  238 (386)
T ss_dssp             CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred             CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH
Confidence            88999999999997 4455   46778889999999999998  3   34447888999999999999996    67888


Q ss_pred             cccCCCCCCeEeccCCccccc----cchhhh--ccCCCcEEecccccccc----ccCccc-cCCCCCcEEEcccCCCCCC
Q 045449          446 CLGNLTSVRVLYLGLNIFTSV----LSSTIW--NLKDILFIDVSSNFLDG----PLSLDI-GNLKVVIGLDFSRNNLSGD  514 (823)
Q Consensus       446 ~~~~l~~L~~L~Ls~N~l~~~----~p~~~~--~l~~L~~LdLs~N~l~g----~~p~~~-~~l~~L~~L~ls~N~l~g~  514 (823)
                      .+..+++|+.|+|++|.+++.    +|..+.  .+++|+.|+|++|.+++    .+|..+ .+++.|+.|++++|++++.
T Consensus       239 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~  318 (386)
T 2ca6_A          239 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE  318 (386)
T ss_dssp             HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred             HHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcc
Confidence            899999999999999999886    566663  38999999999999998    588877 6789999999999999854


Q ss_pred             C
Q 045449          515 I  515 (823)
Q Consensus       515 i  515 (823)
                      .
T Consensus       319 ~  319 (386)
T 2ca6_A          319 D  319 (386)
T ss_dssp             S
T ss_pred             h
Confidence            3

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.91  E-value=7.4e-26  Score=245.71  Aligned_cols=212  Identities=18%  Similarity=0.239  Sum_probs=142.8

Q ss_pred             CCCccceeeeeCCCCCcEEEEEcCCCCCccccCcccCCC--CCCcEEEccCCCCCCCCCCCCCCCCCCCEEECCCCcCcC
Q 045449           37 TSVCIWIGITCDVNSHRVIGLNISSFNLQGTITPQLGNL--SSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQLFG  114 (823)
Q Consensus        37 ~~~c~w~gv~c~~~~~~v~~L~L~~~~l~g~~~~~l~~l--~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~  114 (823)
                      .-|.+|.++.|+.  ..++.||++++.+.   +..+..+  +++++|++++|.+.+..+. +..+++|++|+|++|.+++
T Consensus        34 ~vc~~W~~~~~~~--~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~  107 (336)
T 2ast_B           34 GVCKRWYRLASDE--SLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEV  107 (336)
T ss_dssp             SSCHHHHHHHTCS--TTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECH
T ss_pred             HHHHHHHHHhcCc--hhheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCH
Confidence            4566899999873  35789999999887   4556677  8999999999999977665 5679999999999999987


Q ss_pred             C-CchhhhcCCCCcEEecccccccCccCccccCCCCCCccccccceeeeccc-eeecc-CccccccchhhHHHHHhhcCC
Q 045449          115 S-LSSFIFNMSSMTTIDLSINRLSGELPANICKIPSTLSKCKQLEELNLGFN-NLSGA-IPKEIGNLTKLKEIISTITNS  191 (823)
Q Consensus       115 ~-~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~p~~~~~l~~L~~L~Ls~N-~l~~~-~p~~l~~l~~L~~L~~l~~n~  191 (823)
                      . +|..+..+++|++|+|++|.+++..+..+       ..+++|++|+|++| .+++. ++                   
T Consensus       108 ~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l-------~~~~~L~~L~L~~~~~l~~~~l~-------------------  161 (336)
T 2ast_B          108 STLHGILSQCSKLQNLSLEGLRLSDPIVNTL-------AKNSNLVRLNLSGCSGFSEFALQ-------------------  161 (336)
T ss_dssp             HHHHHHHTTBCCCSEEECTTCBCCHHHHHHH-------TTCTTCSEEECTTCBSCCHHHHH-------------------
T ss_pred             HHHHHHHhhCCCCCEEeCcCcccCHHHHHHH-------hcCCCCCEEECCCCCCCCHHHHH-------------------
Confidence            6 88889999999999999999887766666       67889999999998 56531 11                   


Q ss_pred             CcccCCcccCCcchhhhhccccc-cccCC-ccccccCCC-CCcEEEccCC--ccc-ccCCcccccCCCCccEEEeeccc-
Q 045449          192 TVCEIPREIGNLPYLARLALATN-NLVGV-VPVTIFNMS-ALKEISLLNN--SLS-GSLPSRIDLSLPNVETLNLGINS-  264 (823)
Q Consensus       192 ~~~~ip~~l~~l~~L~~L~Ls~N-~l~~~-~p~~~~~l~-~L~~L~Ls~N--~l~-g~lp~~~~~~l~~L~~L~Ls~N~-  264 (823)
                            ..+.++++|++|++++| ++++. ++..+..++ +|++|++++|  .++ +.+|..+.. +++|++|+|++|. 
T Consensus       162 ------~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~-~~~L~~L~l~~~~~  234 (336)
T 2ast_B          162 ------TLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRR-CPNLVHLDLSDSVM  234 (336)
T ss_dssp             ------HHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHH-CTTCSEEECTTCTT
T ss_pred             ------HHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhh-CCCCCEEeCCCCCc
Confidence                  11223445566666666 66543 344455555 5666666655  233 233332222 4455555555554 


Q ss_pred             cccccCccccCCCCCCeEEeecc
Q 045449          265 FSGTIPSSITNSSKLSDLELGEN  287 (823)
Q Consensus       265 l~~~~p~~~~~l~~L~~L~Ls~N  287 (823)
                      +++..+..+..+++|++|++++|
T Consensus       235 l~~~~~~~l~~l~~L~~L~l~~~  257 (336)
T 2ast_B          235 LKNDCFQEFFQLNYLQHLSLSRC  257 (336)
T ss_dssp             CCGGGGGGGGGCTTCCEEECTTC
T ss_pred             CCHHHHHHHhCCCCCCEeeCCCC
Confidence            44444444444444444444444

>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...

Probab=99.91  E-value=1.1e-25  Score=243.85  Aligned_cols=149  Identities=22%  Similarity=0.280  Sum_probs=127.7

Q ss_pred             ccCCccceeeccC------------CeEEEEEEehHhh---HHHHHHHHHHHHHHhhcchhhHHH---------------
Q 045449          628 DRFSENNLIGIGN------------GMEVAVKVFHQQY---ERALKSFEDECEVRKRIRHRNLVK---------------  677 (823)
Q Consensus       628 ~~f~~~~~lg~g~------------~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~---------------  677 (823)
                      ++|...+.||+|+            |+.||||+++...   ....+.+.+|++++++++||||++               
T Consensus         5 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~l~~~~~~~~~~~lv~   84 (337)
T 1o6l_A            5 NDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCFVM   84 (337)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             HHeEEEEEEecCCCeEEEEEEECCCCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhCCCCcCcceEEEEEeCCEEEEEE
Confidence            5778888899886            6679999997653   223467899999999999999998               


Q ss_pred             -------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccc
Q 045449          678 -------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQ  732 (823)
Q Consensus       678 -------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~  732 (823)
                                               +++|++.+|+|+|+.+|+||||||+|||++.++.+||+|||+|+.......  ..
T Consensus        85 E~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~g~vkL~DFG~a~~~~~~~~--~~  162 (337)
T 1o6l_A           85 EYANGGELFFHLSRERVFTEERARFYGAEIVSALEYLHSRDVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGA--TM  162 (337)
T ss_dssp             ECCTTCBHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTSCEEECCCTTCBCSCCTTC--CB
T ss_pred             eCCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeecCcCCHHHEEECCCCCEEEeeccchhhcccCCC--cc
Confidence                                     367899999999999999999999999999999999999999986432221  23


Q ss_pred             cccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCC
Q 045449          733 TQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       733 ~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      ...+||+.|+|||++.+..|+.++||||+||++|+|++|..||.+.
T Consensus       163 ~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~  208 (337)
T 1o6l_A          163 KTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQ  208 (337)
T ss_dssp             CCCEECGGGCCGGGGSSSCBCTTHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             cccccChhhCChhhhcCCCCCchhhcccchhHHHHHhcCCCCCCCC
Confidence            4568999999999999999999999999999999999999999654

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.91  E-value=9.3e-24  Score=223.76  Aligned_cols=204  Identities=21%  Similarity=0.239  Sum_probs=142.2

Q ss_pred             ccCCCCCcEEEccCCcccccCCcccccCCCCccEEEeeccccccccCccccCCCCCCeEEeecccccccCCCccCCCccc
Q 045449          224 IFNMSALKEISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSITNSSKLSDLELGENLFSGFIPNTIGNLRNL  303 (823)
Q Consensus       224 ~~~l~~L~~L~Ls~N~l~g~lp~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L  303 (823)
                      +.++++++++++++|.++ .+|..+.   +++++|+|++|++++..|..|.++++|++|+|++|.+++..+.  +.+++|
T Consensus         6 ~~~l~~l~~l~~~~~~l~-~ip~~~~---~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L   79 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLT-ALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVL   79 (290)
T ss_dssp             EECSTTCCEEECTTSCCS-SCCSCCC---TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTC
T ss_pred             ccccCCccEEECCCCCCC-cCCCCCC---CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcC
Confidence            556677777777777777 6665543   4677777777777766667777777777777777777654332  445555


Q ss_pred             CcccccCccccCCCCcccccccccCCCCceEEEeecCCCCccCCccccccccccceEEecCCcceeccCccccCcccccE
Q 045449          304 EFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGILPKSIGNFSLSLETILMANCSISGNIPQVVGNLSNLLV  383 (823)
Q Consensus       304 ~~L~L~~N~l~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~  383 (823)
                      ++|+|++|+++.                              +|..+..+ ++|++|++++|+|++..|..|.++++|++
T Consensus        80 ~~L~Ls~N~l~~------------------------------l~~~~~~l-~~L~~L~l~~N~l~~l~~~~~~~l~~L~~  128 (290)
T 1p9a_G           80 GTLDLSHNQLQS------------------------------LPLLGQTL-PALTVLDVSFNRLTSLPLGALRGLGELQE  128 (290)
T ss_dssp             CEEECCSSCCSS------------------------------CCCCTTTC-TTCCEEECCSSCCCCCCSSTTTTCTTCCE
T ss_pred             CEEECCCCcCCc------------------------------CchhhccC-CCCCEEECCCCcCcccCHHHHcCCCCCCE
Confidence            555555555443                              34444444 45666666666666666667777777888


Q ss_pred             EEcccCcCCCCchhcccccCCCCEEEccCCCCCCcchHhhhcCCCCCEEEcccCcCcccccccccCCCCCCeEeccCCcc
Q 045449          384 LELGGNNLTGPIPVTFSQLQTLQAFDLTRNKLAGPITDELCHLARLHSLVLQGNKFSGSIPSCLGNLTSVRVLYLGLNIF  463 (823)
Q Consensus       384 L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l  463 (823)
                      |+|++|++++..+..|..+++|+.|+|++|+|++..+..|..+++|+.|+|++|+|+ .+|..+..+++|+.|+|++|.+
T Consensus       129 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~  207 (290)
T 1p9a_G          129 LYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW  207 (290)
T ss_dssp             EECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCB
T ss_pred             EECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCc
Confidence            888888887666666777888888888888888666666777888888888888887 6777777777888888888887


Q ss_pred             cc
Q 045449          464 TS  465 (823)
Q Consensus       464 ~~  465 (823)
                      ..
T Consensus       208 ~C  209 (290)
T 1p9a_G          208 LC  209 (290)
T ss_dssp             CC
T ss_pred             cC
Confidence            65

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A

Probab=99.91  E-value=1e-25  Score=243.23  Aligned_cols=149  Identities=28%  Similarity=0.393  Sum_probs=128.6

Q ss_pred             hccCCccceeeccC------------CeEEEEEEehHhh--HHHHHHHHHHHHHHhhcchhhHHH---------------
Q 045449          627 TDRFSENNLIGIGN------------GMEVAVKVFHQQY--ERALKSFEDECEVRKRIRHRNLVK---------------  677 (823)
Q Consensus       627 t~~f~~~~~lg~g~------------~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~---------------  677 (823)
                      .++|...+.||.|+            |+.||||++....  ....+++.+|++++++++||||++               
T Consensus        14 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~lv~   93 (328)
T 3fe3_A           14 IGNYRLLKTIGKGNFAKVKLARHILTGREVAIKIIDKTQLNPTSLQKLFREVRIMKILNHPNIVKLFEVIETEKTLYLIM   93 (328)
T ss_dssp             ETTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             cCCEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhhcCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCEEEEEE
Confidence            46788888999886            6779999996542  445678999999999999999998               


Q ss_pred             -------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccc
Q 045449          678 -------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQ  732 (823)
Q Consensus       678 -------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~  732 (823)
                                               ++.|++.+|+|+|+.+|+||||||+||+++.++.+||+|||+++.......   .
T Consensus        94 e~~~~~~L~~~l~~~~~l~~~~~~~~~~qi~~al~~lH~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~---~  170 (328)
T 3fe3_A           94 EYASGGEVFDYLVAHGRMKEKEARSKFRQIVSAVQYCHQKRIVHRDLKAENLLLDADMNIKIADFGFSNEFTVGGK---L  170 (328)
T ss_dssp             CCCTTCBHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTSCEEECSTTCCGGGSSSCG---G
T ss_pred             ECCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCEeccCCCHHHEEEcCCCCEEEeeccCceecCCCCc---c
Confidence                                     467899999999999999999999999999999999999999987654322   3


Q ss_pred             cccccCCCcCcccccCCCccc-cccceehhhhhhccccCCCCCcCCC
Q 045449          733 TQTLATIGYMAPEYGTKGRVS-TRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       733 ~~~~gt~~y~aPE~~~~~~~~-~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      ...+||+.|+|||++.+..+. .++||||+||++|++++|..||.+.
T Consensus       171 ~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~  217 (328)
T 3fe3_A          171 DAFCGAPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDGQ  217 (328)
T ss_dssp             GTTSSSGGGCCHHHHHTCCCCSHHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             ccccCCcceeCcccccCCCcCCchhhhhhhHHHHHHHHhCCCCCCCC
Confidence            456799999999999887764 7899999999999999999999764

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.91  E-value=1.5e-25  Score=245.99  Aligned_cols=231  Identities=17%  Similarity=0.225  Sum_probs=130.5

Q ss_pred             EEEccCCcccccCCcccccCCCCccEEEeeccccccccC----ccccCCC-CCCeEEeecccccccCCCccCCC-----c
Q 045449          232 EISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIP----SSITNSS-KLSDLELGENLFSGFIPNTIGNL-----R  301 (823)
Q Consensus       232 ~L~Ls~N~l~g~lp~~~~~~l~~L~~L~Ls~N~l~~~~p----~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~l-----~  301 (823)
                      ++.++.|.++|.+|..+.. .++|++|||++|.+++..+    ..+..++ +|++|+|++|++++..+..+..+     +
T Consensus         2 ~~~ls~n~~~~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~   80 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFTSI-PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA   80 (362)
T ss_dssp             EEECCCCTTCCHHHHHHTS-CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCT
T ss_pred             ccccccccchHHHHHHHhC-CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCC
Confidence            4677888888777765443 5558888888888876665    6667777 78888888888887766666664     7


Q ss_pred             ccCcccccCccccCCCCcccccccccCC-CCceEEEeecCCCCccCCcccccc----ccccceEEecCCcceecc----C
Q 045449          302 NLEFGNIADNYLTSSTPELSFLSSLTNC-KKLKVLIVTGNPLDGILPKSIGNF----SLSLETILMANCSISGNI----P  372 (823)
Q Consensus       302 ~L~~L~L~~N~l~~~~~~~~~~~~l~~l-~~L~~L~Ls~N~l~~~~p~~~~~~----~~~L~~L~L~~N~l~~~~----p  372 (823)
                      +|++|+|++|.+++..+.. +...+..+ ++|+.|+|++|.+++..+..+...    +.+|++|+|++|.+++..    +
T Consensus        81 ~L~~L~Ls~n~l~~~~~~~-l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~  159 (362)
T 3goz_A           81 NVTSLNLSGNFLSYKSSDE-LVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELI  159 (362)
T ss_dssp             TCCEEECCSSCGGGSCHHH-HHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHH
T ss_pred             CccEEECcCCcCChHHHHH-HHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHH
Confidence            7777777777777653211 12223444 667777777777766555443321    235566666666555322    2


Q ss_pred             ccccCcc-cccEEEcccCcCCCCchhcccc----c-CCCCEEEccCCCCCCc----chHhhhc-CCCCCEEEcccCcCcc
Q 045449          373 QVVGNLS-NLLVLELGGNNLTGPIPVTFSQ----L-QTLQAFDLTRNKLAGP----ITDELCH-LARLHSLVLQGNKFSG  441 (823)
Q Consensus       373 ~~~~~l~-~L~~L~Ls~N~l~g~~p~~~~~----l-~~L~~L~Ls~N~l~~~----~p~~~~~-l~~L~~L~Ls~N~l~g  441 (823)
                      ..+..++ +|++|+|++|++++..+..+..    . ++|++|+|++|++++.    ++..+.. .++|++|+|++|.+++
T Consensus       160 ~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~  239 (362)
T 3goz_A          160 QILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHG  239 (362)
T ss_dssp             HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCC
T ss_pred             HHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCc
Confidence            2223333 5555555555555444433322    2 3555555555555542    2333333 2355555555555554


Q ss_pred             ccc----ccccCCCCCCeEeccCCccc
Q 045449          442 SIP----SCLGNLTSVRVLYLGLNIFT  464 (823)
Q Consensus       442 ~~p----~~~~~l~~L~~L~Ls~N~l~  464 (823)
                      ..+    ..+..+++|+.|+|++|.+.
T Consensus       240 ~~~~~l~~~~~~l~~L~~L~L~~n~l~  266 (362)
T 3goz_A          240 PSLENLKLLKDSLKHLQTVYLDYDIVK  266 (362)
T ss_dssp             CCHHHHHHTTTTTTTCSEEEEEHHHHT
T ss_pred             HHHHHHHHHHhcCCCccEEEeccCCcc
Confidence            332    22344455555555555533

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.91  E-value=1.2e-23  Score=223.00  Aligned_cols=178  Identities=19%  Similarity=0.197  Sum_probs=101.4

Q ss_pred             ceEEEeecCCCCccCCccccccccccceEEecCCcceeccCccccCcccccEEEcccCcCCCCchhcccccCCCCEEEcc
Q 045449          332 LKVLIVTGNPLDGILPKSIGNFSLSLETILMANCSISGNIPQVVGNLSNLLVLELGGNNLTGPIPVTFSQLQTLQAFDLT  411 (823)
Q Consensus       332 L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls  411 (823)
                      ++.|+|++|.+++..|..|..+ .+|++|++++|.+++..+.  +.+++|++|+|++|+++ .+|..+..+++|++|+|+
T Consensus        33 l~~L~L~~N~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~--~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~  108 (290)
T 1p9a_G           33 TTILHLSENLLYTFSLATLMPY-TRLTQLNLDRAELTKLQVD--GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVS  108 (290)
T ss_dssp             CCEEECTTSCCSEEEGGGGTTC-TTCCEEECTTSCCCEEECC--SCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECC
T ss_pred             CCEEEcCCCcCCccCHHHhhcC-CCCCEEECCCCccCcccCC--CCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECC
Confidence            3444444444444444444444 3444444444444433222  45556666666666665 455555666666666666


Q ss_pred             CCCCCCcchHhhhcCCCCCEEEcccCcCcccccccccCCCCCCeEeccCCccccccchhhhccCCCcEEecccccccccc
Q 045449          412 RNKLAGPITDELCHLARLHSLVLQGNKFSGSIPSCLGNLTSVRVLYLGLNIFTSVLSSTIWNLKDILFIDVSSNFLDGPL  491 (823)
Q Consensus       412 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~~  491 (823)
                      +|+|++..+..|..+++|+.|+|++|++++..+..|..+++|+.|+|++|++++..+..+..+++|+.|+|++|+++ .+
T Consensus       109 ~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~i  187 (290)
T 1p9a_G          109 FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TI  187 (290)
T ss_dssp             SSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CC
T ss_pred             CCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-cc
Confidence            66666555555666666666666666666555555566666666666666666555555556666666666666665 45


Q ss_pred             CccccCCCCCcEEEcccCCCCCC
Q 045449          492 SLDIGNLKVVIGLDFSRNNLSGD  514 (823)
Q Consensus       492 p~~~~~l~~L~~L~ls~N~l~g~  514 (823)
                      |..+..+..|+.|++++|.+.+.
T Consensus       188 p~~~~~~~~L~~l~L~~Np~~C~  210 (290)
T 1p9a_G          188 PKGFFGSHLLPFAFLHGNPWLCN  210 (290)
T ss_dssp             CTTTTTTCCCSEEECCSCCBCCS
T ss_pred             ChhhcccccCCeEEeCCCCccCc
Confidence            55555566666666666666543

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*

Probab=99.91  E-value=1e-25  Score=240.07  Aligned_cols=150  Identities=27%  Similarity=0.382  Sum_probs=129.8

Q ss_pred             hccCCccceeeccC------------CeEEEEEEehHhhHHHHHHHHHHHHHHhhcchhhHHH-----------------
Q 045449          627 TDRFSENNLIGIGN------------GMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVK-----------------  677 (823)
Q Consensus       627 t~~f~~~~~lg~g~------------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~-----------------  677 (823)
                      .++|...+.||.|+            +..||||++........+.+.+|+.++++++||||++                 
T Consensus        19 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~   98 (297)
T 3fxz_A           19 KKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEY   98 (297)
T ss_dssp             GGTBCCCEEEEEETTEEEEEEEBTTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred             hhceeeeeeeccCCCeEEEEEEECCCCcEEEEEEeecccccHHHHHHHHHHHHhcCCCCCCCeEeEEEEECCEEEEEEEC
Confidence            35788888899886            5679999997655444577999999999999999998                 


Q ss_pred             ----------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCcccccccc
Q 045449          678 ----------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQT  735 (823)
Q Consensus       678 ----------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~  735 (823)
                                            ++.|++.+|+|+|+.+|+||||||+||+++.++.+||+|||+++.......  .....
T Consensus        99 ~~~~~L~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~--~~~~~  176 (297)
T 3fxz_A           99 LAGGSLTDVVTETCMDEGQIAAVCRECLQALEFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQS--KRSTM  176 (297)
T ss_dssp             CTTCBHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTCCEEECCCTTCEECCSTTC--CBCCC
T ss_pred             CCCCCHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHhCCceeCCCCHHHEEECCCCCEEEeeCCCceecCCccc--ccCCc
Confidence                                  367889999999999999999999999999999999999999987654332  23456


Q ss_pred             ccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCC
Q 045449          736 LATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       736 ~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      .||+.|+|||++.+..++.++||||+||++|++++|..||...
T Consensus       177 ~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~  219 (297)
T 3fxz_A          177 VGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNE  219 (297)
T ss_dssp             CSCGGGCCHHHHHCSCBCTHHHHHHHHHHHHHHHHSSCTTTTS
T ss_pred             cCCcCccChhhhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence            7999999999999999999999999999999999999999664

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe}

Probab=99.91  E-value=3.7e-25  Score=239.42  Aligned_cols=148  Identities=24%  Similarity=0.378  Sum_probs=126.6

Q ss_pred             ccCCccceeeccC------------CeEEEEEEehHhhHH---HHHHHHHHHHHHhhcchhhHHH---------------
Q 045449          628 DRFSENNLIGIGN------------GMEVAVKVFHQQYER---ALKSFEDECEVRKRIRHRNLVK---------------  677 (823)
Q Consensus       628 ~~f~~~~~lg~g~------------~~~vavK~~~~~~~~---~~~~~~~E~~~l~~l~h~niv~---------------  677 (823)
                      ++|...+.||.|+            +..||||++......   ..+.+.+|++++++++||||++               
T Consensus         9 ~~Y~i~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~lv~   88 (336)
T 3h4j_B            9 GPYIIRETLGEGSFGKVKLATHYKTQQKVALKFISRQLLKKSDMHMRVEREISYLKLLRHPHIIKLYDVITTPTDIVMVI   88 (336)
T ss_dssp             TTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCSHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             CCEEEEEEEecCCCeEEEEEEECCCCCEEEEEEEehHHccchhHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEE
Confidence            5778888888886            567999999765322   2357899999999999999998               


Q ss_pred             ------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCcccccc
Q 045449          678 ------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQT  733 (823)
Q Consensus       678 ------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~  733 (823)
                                              ++.|++.+|+|+|+.||+||||||+||+++.++.+||+|||+++.......   ..
T Consensus        89 E~~~g~l~~~l~~~~~l~~~~~~~i~~qi~~aL~~LH~~givH~Dlkp~NIll~~~~~~kl~DFG~s~~~~~~~~---~~  165 (336)
T 3h4j_B           89 EYAGGELFDYIVEKKRMTEDEGRRFFQQIICAIEYCHRHKIVHRDLKPENLLLDDNLNVKIADFGLSNIMTDGNF---LK  165 (336)
T ss_dssp             CCCCEEHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHHTCCCCCCSTTTEEECTTCCEEECCSSCTBTTTTSBT---TC
T ss_pred             ECCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeEecCCchhhEEEcCCCCEEEEEeccceeccCCcc---cc
Confidence                                    467899999999999999999999999999999999999999987654322   34


Q ss_pred             ccccCCCcCcccccCCCcc-ccccceehhhhhhccccCCCCCcCCC
Q 045449          734 QTLATIGYMAPEYGTKGRV-STRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       734 ~~~gt~~y~aPE~~~~~~~-~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      ..+||+.|+|||++.+..+ +.++||||+||++|++++|..||.+.
T Consensus       166 ~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~Pf~~~  211 (336)
T 3h4j_B          166 TSCGSPNYAAPEVINGKLYAGPEVDVWSCGIVLYVMLVGRLPFDDE  211 (336)
T ss_dssp             CCTTSTTTSCGGGSCCSGGGCHHHHHHHHHHHHHHHHHSSCSSBCS
T ss_pred             cccCCcCcCCHHHHcCCCCCCCccchhHHHHHHHHHHhCCCCCCCc
Confidence            4679999999999988776 78999999999999999999999764

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*

Probab=99.91  E-value=1.4e-25  Score=240.34  Aligned_cols=151  Identities=28%  Similarity=0.407  Sum_probs=120.0

Q ss_pred             hccCCccceeeccC----------CeEEEEEEehHhh--HHHHHHHHHHHHHHhhcchhhHHH-----------------
Q 045449          627 TDRFSENNLIGIGN----------GMEVAVKVFHQQY--ERALKSFEDECEVRKRIRHRNLVK-----------------  677 (823)
Q Consensus       627 t~~f~~~~~lg~g~----------~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~-----------------  677 (823)
                      .++|...+.||.|+          +..||||++....  ....++|.+|++++++++||||++                 
T Consensus        36 ~~~y~i~~~lG~G~~g~V~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~  115 (309)
T 3p86_A           36 WCDLNIKEKIGAGSFGTVHRAEWHGSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVLFMGAVTQPPNLSIVTEY  115 (309)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTEEEEEEEECCCCCSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSTTCCEEEEEC
T ss_pred             hhHceeeeEeecCCCeEEEEEEECCCcEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCceEEEEec
Confidence            46788888999986          6679999986443  445578999999999999999998                 


Q ss_pred             --------------------------HHHHHHHHhhhcCCCC--EEeccCCCCCEEeCCCCcEEEeecccccccCCCCcc
Q 045449          678 --------------------------IISSSLEYLHFGHSIP--IIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQL  729 (823)
Q Consensus       678 --------------------------~~~~~l~~L~~~h~~~--ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~  729 (823)
                                                ++.|++.+|+|+|+.+  |+||||||+||+++.++.+||+|||+++......  
T Consensus       116 ~~~~~L~~~l~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~~~ivH~Dikp~NIll~~~~~~kL~Dfg~a~~~~~~~--  193 (309)
T 3p86_A          116 LSRGSLYRLLHKSGAREQLDERRRLSMAYDVAKGMNYLHNRNPPIVHRNLKSPNLLVDKKYTVKVCDFGLSRLKASTF--  193 (309)
T ss_dssp             CTTCBHHHHHHSTTHHHHSCHHHHHHHHHHHHHHHHHHHTSSSCCCCTTCCGGGEEECTTCCEEECCCC-----------
T ss_pred             CCCCcHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCEECCCCChhhEEEeCCCcEEECCCCCCccccccc--
Confidence                                      3568899999999999  9999999999999999999999999998653322  


Q ss_pred             ccccccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCCc
Q 045449          730 SKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGETC  779 (823)
Q Consensus       730 ~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~~  779 (823)
                      .......||+.|+|||++.+..++.++||||+||++|++++|..||....
T Consensus       194 ~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~Pf~~~~  243 (309)
T 3p86_A          194 LSSKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELATLQQPWGNLN  243 (309)
T ss_dssp             --------CCTTSCHHHHTTCCCCTTHHHHHHHHHHHHHHHCCCTTTTSC
T ss_pred             cccccCCCCccccChhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCC
Confidence            12334679999999999999999999999999999999999999997653

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens}

Probab=99.91  E-value=2.5e-25  Score=238.70  Aligned_cols=152  Identities=26%  Similarity=0.363  Sum_probs=127.7

Q ss_pred             hccCCccceeeccC------------CeEEEEEEehHhhHHHHHHHHHHHHHHhhcchhhHHH-----------------
Q 045449          627 TDRFSENNLIGIGN------------GMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVK-----------------  677 (823)
Q Consensus       627 t~~f~~~~~lg~g~------------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~-----------------  677 (823)
                      .++|...+.||.|+            +..||+|++........+.|.+|++++++++||||++                 
T Consensus         9 ~~~~~~~~~lG~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~   88 (310)
T 3s95_A            9 PSDLIHGEVLGKGCFGQAIKVTHRETGEVMVMKELIRFDEETQRTFLKEVKVMRCLEHPNVLKFIGVLYKDKRLNFITEY   88 (310)
T ss_dssp             GGGEEEEEEEECCSSEEEEEEEETTTCCEEEEEEESCCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred             hhHeeccceecCCCCEEEEEEEECCCCcEEEEEEeccCCHHHHHHHHHHHHHHHhCCCcCcccEEEEEecCCeeEEEEEe
Confidence            35677788888886            5679999987666667789999999999999999998                 


Q ss_pred             ------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccc---
Q 045449          678 ------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLS---  730 (823)
Q Consensus       678 ------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~---  730 (823)
                                              ++.|++++|+|+|+.+|+||||||+||+++.++.+||+|||+++.........   
T Consensus        89 ~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~  168 (310)
T 3s95_A           89 IKGGTLRGIIKSMDSQYPWSQRVSFAKDIASGMAYLHSMNIIHRDLNSHNCLVRENKNVVVADFGLARLMVDEKTQPEGL  168 (310)
T ss_dssp             CTTCBHHHHHHHCCTTSCHHHHHHHHHHHHHHHHHHHHTTEECSCCSTTSEEECTTSCEEECCCTTCEECC---------
T ss_pred             cCCCcHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhCCccCCCCCcCeEEECCCCCEEEeecccceeccccccccccc
Confidence                                    35788999999999999999999999999999999999999998764332211   


Q ss_pred             ---------cccccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCC
Q 045449          731 ---------KQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       731 ---------~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                               .....+||+.|+|||++.+..++.++|||||||++|++++|..|+...
T Consensus       169 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~~~~~~  225 (310)
T 3s95_A          169 RSLKKPDRKKRYTVVGNPYWMAPEMINGRSYDEKVDVFSFGIVLCEIIGRVNADPDY  225 (310)
T ss_dssp             -----------CCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHTCCSSTTT
T ss_pred             ccccccccccccccCCCcceeCHHHhcCCCCCcHHHHHHHHHHHHHHhcCCCCCcch
Confidence                     111457999999999999999999999999999999999999887654

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.91  E-value=1.6e-25  Score=248.12  Aligned_cols=249  Identities=19%  Similarity=0.250  Sum_probs=166.7

Q ss_pred             CccccccCCCCCcEEEccCCcccccCCccc---ccCCCCccEEEeecc---ccccccCccc-------cCCCCCCeEEee
Q 045449          219 VVPVTIFNMSALKEISLLNNSLSGSLPSRI---DLSLPNVETLNLGIN---SFSGTIPSSI-------TNSSKLSDLELG  285 (823)
Q Consensus       219 ~~p~~~~~l~~L~~L~Ls~N~l~g~lp~~~---~~~l~~L~~L~Ls~N---~l~~~~p~~~-------~~l~~L~~L~Ls  285 (823)
                      .++..+..+++|++|+|++|.+++..+..+   ...+++|++|+|++|   ++++.+|..+       ..+++|++|+|+
T Consensus        23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls  102 (386)
T 2ca6_A           23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS  102 (386)
T ss_dssp             TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred             HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence            355677788999999999999986544332   224899999999995   5566667665       678888899999


Q ss_pred             cccccc----cCCCccCCCcccCcccccCccccCCCCcccccccccCC---------CCceEEEeecCCCCccCCccccc
Q 045449          286 ENLFSG----FIPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNC---------KKLKVLIVTGNPLDGILPKSIGN  352 (823)
Q Consensus       286 ~N~l~~----~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~l---------~~L~~L~Ls~N~l~~~~p~~~~~  352 (823)
                      +|.+++    .+|..+..+++|++|+|++|.++...+. .+...+..+         ++|+.|++++|+++.        
T Consensus       103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~-~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~--------  173 (386)
T 2ca6_A          103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGA-KIARALQELAVNKKAKNAPPLRSIICGRNRLEN--------  173 (386)
T ss_dssp             SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHH-HHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTG--------
T ss_pred             CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHH-HHHHHHHHHhhhhhcccCCCCcEEECCCCCCCc--------
Confidence            888887    4566667777777777777776543111 012222222         455555555555441        


Q ss_pred             cccccceEEecCCcceeccC---ccccCcccccEEEcccCcCC--C---CchhcccccCCCCEEEccCCCCC----Ccch
Q 045449          353 FSLSLETILMANCSISGNIP---QVVGNLSNLLVLELGGNNLT--G---PIPVTFSQLQTLQAFDLTRNKLA----GPIT  420 (823)
Q Consensus       353 ~~~~L~~L~L~~N~l~~~~p---~~~~~l~~L~~L~Ls~N~l~--g---~~p~~~~~l~~L~~L~Ls~N~l~----~~~p  420 (823)
                                      +.+|   ..+..+++|++|+|++|+++  |   .+|..+..+++|++|+|++|.++    +.+|
T Consensus       174 ----------------~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~  237 (386)
T 2ca6_A          174 ----------------GSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALA  237 (386)
T ss_dssp             ----------------GGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHH
T ss_pred             ----------------HHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHH
Confidence                            2222   34455666777777777766  2   23436667777777777777775    4566


Q ss_pred             HhhhcCCCCCEEEcccCcCccc----ccccc--cCCCCCCeEeccCCcccc----ccchhh-hccCCCcEEecccccccc
Q 045449          421 DELCHLARLHSLVLQGNKFSGS----IPSCL--GNLTSVRVLYLGLNIFTS----VLSSTI-WNLKDILFIDVSSNFLDG  489 (823)
Q Consensus       421 ~~~~~l~~L~~L~Ls~N~l~g~----~p~~~--~~l~~L~~L~Ls~N~l~~----~~p~~~-~~l~~L~~LdLs~N~l~g  489 (823)
                      ..+..+++|+.|+|++|.+++.    +|..+  +.+++|+.|+|++|.+++    .+|..+ .++++|++|++++|.+++
T Consensus       238 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~  317 (386)
T 2ca6_A          238 IALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  317 (386)
T ss_dssp             HHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             HHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCc
Confidence            6677777777777777777655    45555  337778888888888777    466666 557888888888888877


Q ss_pred             ccC
Q 045449          490 PLS  492 (823)
Q Consensus       490 ~~p  492 (823)
                      ..+
T Consensus       318 ~~~  320 (386)
T 2ca6_A          318 EDD  320 (386)
T ss_dssp             TSH
T ss_pred             chh
Confidence            664

>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*

Probab=99.91  E-value=1.3e-25  Score=249.20  Aligned_cols=158  Identities=20%  Similarity=0.221  Sum_probs=131.8

Q ss_pred             HHHHHHHhccCCccceeeccC------------CeEEEEEEehHhhHH---HHHHHHHHHHHHhhcchhhHHH-------
Q 045449          620 YHELLRATDRFSENNLIGIGN------------GMEVAVKVFHQQYER---ALKSFEDECEVRKRIRHRNLVK-------  677 (823)
Q Consensus       620 ~~~l~~at~~f~~~~~lg~g~------------~~~vavK~~~~~~~~---~~~~~~~E~~~l~~l~h~niv~-------  677 (823)
                      +.++....++|...+.||+|+            +..||||++......   ..+.+.+|+++++.++|||||+       
T Consensus        61 ~~~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~k~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~  140 (410)
T 3v8s_A           61 IRDLRMKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFYAFQD  140 (410)
T ss_dssp             HHHHSCCGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTCCCSTHHHHHHHHHHCCCTTBCCEEEEEEC
T ss_pred             HHhcccCccccEEEEEEEcCCCEEEEEEEECCCCcEEEEEEEehhhhhhhHHHHHHHHHHHHHHhCCCCCCCeEEEEEEE
Confidence            344555678899999999986            567999999754321   1235889999999999999998       


Q ss_pred             --------------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCC
Q 045449          678 --------------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSG  725 (823)
Q Consensus       678 --------------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~  725 (823)
                                                      +++|++.+|+|+|+.+|+||||||+|||++.++++||+|||+|+....
T Consensus       141 ~~~~~lV~E~~~gg~L~~~l~~~~~~e~~~~~~~~qi~~aL~~LH~~givHrDLKp~NILl~~~g~ikL~DFG~a~~~~~  220 (410)
T 3v8s_A          141 DRYLYMVMEYMPGGDLVNLMSNYDVPEKWARFYTAEVVLALDAIHSMGFIHRDVKPDNMLLDKSGHLKLADFGTCMKMNK  220 (410)
T ss_dssp             SSEEEEEECCCTTEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEECCT
T ss_pred             CCEEEEEEeCCCCCcHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeEeccCCHHHeeECCCCCEEEeccceeEeecc
Confidence                                            467899999999999999999999999999999999999999987654


Q ss_pred             CCccccccccccCCCcCcccccCCCc----cccccceehhhhhhccccCCCCCcCCC
Q 045449          726 EDQLSKQTQTLATIGYMAPEYGTKGR----VSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       726 ~~~~~~~~~~~gt~~y~aPE~~~~~~----~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      ... ......+||+.|+|||++.+..    |+.++||||+||++|+|++|..||.+.
T Consensus       221 ~~~-~~~~~~~gt~~Y~APE~l~~~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~  276 (410)
T 3v8s_A          221 EGM-VRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYAD  276 (410)
T ss_dssp             TSE-EECCSCCSCGGGCCHHHHHTTTTTCEEETHHHHHHHHHHHHHHHHSSCTTCCS
T ss_pred             CCc-ccccCCcCCccccCHHHhhccCCCcCCCCcceEecchHHHHHHHhCCCCCCCC
Confidence            332 2234568999999999987655    889999999999999999999999654

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*

Probab=99.90  E-value=7.7e-26  Score=243.98  Aligned_cols=162  Identities=36%  Similarity=0.516  Sum_probs=137.1

Q ss_pred             ccCHHHHHHHhccCCccceeeccC-----------CeEEEEEEehHhhHHHHHHHHHHHHHHhhcchhhHHH--------
Q 045449          617 RFSYHELLRATDRFSENNLIGIGN-----------GMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVK--------  677 (823)
Q Consensus       617 ~~~~~~l~~at~~f~~~~~lg~g~-----------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~--------  677 (823)
                      ++++.++..++++|...+.||.|+           +..||||++........+.|.+|++++++++||||++        
T Consensus        28 ~~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~  107 (321)
T 2qkw_B           28 RVPLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESSQGIEEFETEIETLSFCRHPHLVSLIGFCDER  107 (321)
T ss_dssp             --CCSCCCCCCCCCSCCCCSCBCSSSEEEEEECTTCCEEEEEECCSCCSSHHHHHHHHHHGGGSCCCTTBCCEEEECCCT
T ss_pred             eecHHHHHHHHhccCccceeecCCCeeEEEEEECCCCEEEEEEecccChHHHHHHHHHHHHHHhCCCCCEeeEEEEEcCC
Confidence            455566677889999999999886           5679999987665556678999999999999999998        


Q ss_pred             ------------------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeeccccc
Q 045449          678 ------------------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAK  721 (823)
Q Consensus       678 ------------------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~  721 (823)
                                                          ++.|++.+|+|+|+.+|+||||||+||+++.++.+||+|||+++
T Consensus       108 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~  187 (321)
T 2qkw_B          108 NEMILIYKYMENGNLKRHLYGSDLPTMSMSWEQRLEICIGAARGLHYLHTRAIIHRDVKSINILLDENFVPKITDFGISK  187 (321)
T ss_dssp             TCCEEEEECCTTCBTGGGSSSSCCCSCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCSTTEEECTTCCEEECCCTTCE
T ss_pred             CeEEEEEEcCCCCcHHHHHhccCCCccccCHHHHHHHHHHHHHHHHHhcCCCeecCCCCHHHEEECCCCCEEEeeccccc
Confidence                                                35688899999999999999999999999999999999999998


Q ss_pred             ccCCCCccccccccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCC
Q 045449          722 LLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       722 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      ...............||+.|+|||++.+..++.++|||||||++|++++|+.||.+.
T Consensus       188 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~p~~~~  244 (321)
T 2qkw_B          188 KGTELDQTHLSTVVKGTLGYIDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSAIVQS  244 (321)
T ss_dssp             ECSSSSCCCCBCCCEEETTTCCHHHHHHCBCCTHHHHHHHHHHHHHHHHCCTTCSCS
T ss_pred             ccccccccccccccCCCccccCHHHhcCCCCCcccchHhHHHHHHHHHhCCCccccc
Confidence            754333322334456999999999998889999999999999999999999998654

>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}

Probab=99.90  E-value=2.2e-25  Score=247.46  Aligned_cols=160  Identities=21%  Similarity=0.285  Sum_probs=133.6

Q ss_pred             cCHHHHHHHhccCCccceeeccC------------CeEEEEEEehHhhH---HHHHHHHHHHHHHhhcchhhHHH-----
Q 045449          618 FSYHELLRATDRFSENNLIGIGN------------GMEVAVKVFHQQYE---RALKSFEDECEVRKRIRHRNLVK-----  677 (823)
Q Consensus       618 ~~~~~l~~at~~f~~~~~lg~g~------------~~~vavK~~~~~~~---~~~~~~~~E~~~l~~l~h~niv~-----  677 (823)
                      ++++++....++|...+.||+|+            |+.||||++.....   ...+.+.+|++++.+++||||++     
T Consensus        51 ~~~~~~~~~~~~f~~~~~lG~G~fG~V~~~~~~~~~~~vAiK~l~k~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~  130 (412)
T 2vd5_A           51 VRLKEVRLQRDDFEILKVIGRGAFSEVAVVKMKQTGQVYAMKIMNKWDMLKRGEVSCFREERDVLVNGDRRWITQLHFAF  130 (412)
T ss_dssp             HHHHHHSCCGGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHHGGGCCHHHHHHHHHHSCTTTBCCEEEEE
T ss_pred             hhhhhccCChhhEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhcCCCCeeeEEEEE
Confidence            44555566678999999999986            66799999975432   22346889999999999999998     


Q ss_pred             ------------------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeeccccc
Q 045449          678 ------------------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAK  721 (823)
Q Consensus       678 ------------------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~  721 (823)
                                                          +++|++.+|+|+|+.+|+||||||+|||++.++++||+|||+|+
T Consensus       131 ~~~~~~~lVmE~~~gg~L~~~l~~~~~~l~~~~~~~~~~qi~~aL~~LH~~giiHrDLKp~NILld~~g~vkL~DFGla~  210 (412)
T 2vd5_A          131 QDENYLYLVMEYYVGGDLLTLLSKFGERIPAEMARFYLAEIVMAIDSVHRLGYVHRDIKPDNILLDRCGHIRLADFGSCL  210 (412)
T ss_dssp             ECSSEEEEEECCCCSCBHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCE
T ss_pred             eeCCEEEEEEcCCCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCeeecccCHHHeeecCCCCEEEeechhhe
Confidence                                                46789999999999999999999999999999999999999998


Q ss_pred             ccCCCCccccccccccCCCcCcccccC-------CCccccccceehhhhhhccccCCCCCcCCC
Q 045449          722 LLSGEDQLSKQTQTLATIGYMAPEYGT-------KGRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       722 ~~~~~~~~~~~~~~~gt~~y~aPE~~~-------~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      ....... ......+||+.|+|||++.       ...|+.++||||+||++|+|++|..||...
T Consensus       211 ~~~~~~~-~~~~~~~Gt~~Y~APE~l~~~~~~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~  273 (412)
T 2vd5_A          211 KLRADGT-VRSLVAVGTPDYLSPEILQAVGGGPGTGSYGPECDWWALGVFAYEMFYGQTPFYAD  273 (412)
T ss_dssp             ECCTTSC-EECSSCCSCGGGCCHHHHHHHHTCTTCSEECTHHHHHHHHHHHHHHHHSSCTTCCS
T ss_pred             eccCCCc-cccceeccccCcCCHHHHhhcccCcCCCCCChHHhhhHHhHHHHHHHhCCCCCCCC
Confidence            7654332 1223468999999999986       457899999999999999999999999664

>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*

Probab=99.90  E-value=3.9e-25  Score=250.11  Aligned_cols=149  Identities=28%  Similarity=0.322  Sum_probs=124.5

Q ss_pred             hccCCccceeeccC------------CeEEEEEEehHh--hHHHHHHHHHHHHHHhhcchhhHHH---------------
Q 045449          627 TDRFSENNLIGIGN------------GMEVAVKVFHQQ--YERALKSFEDECEVRKRIRHRNLVK---------------  677 (823)
Q Consensus       627 t~~f~~~~~lg~g~------------~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~---------------  677 (823)
                      .++|...+.||.|+            ++.||||++...  .....+++.+|+.++++++|||||+               
T Consensus        61 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~~  140 (464)
T 3ttj_A           61 LKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEFQ  140 (464)
T ss_dssp             ETTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEESGGGSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCCSTTTCC
T ss_pred             cCCeEEEEEeecCCCeEEEEEEECCCCCEEEEEEECccccChHHHHHHHHHHHHHHhCCCCCCCcEEEEEccCCccccCC
Confidence            46788889999986            567999999653  3445678999999999999999997               


Q ss_pred             ----------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCcc
Q 045449          678 ----------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQL  729 (823)
Q Consensus       678 ----------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~  729 (823)
                                                  ++.|++.+|+|+|+.+|+||||||+|||++.++.+||+|||+|+......  
T Consensus       141 ~~~lv~E~~~~~l~~~~~~~l~~~~~~~~~~qil~aL~~lH~~~iiHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~--  218 (464)
T 3ttj_A          141 DVYLVMELMDANLCQVIQMELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSF--  218 (464)
T ss_dssp             EEEEEEECCSEEHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTSCEEECCCCCC-----CC--
T ss_pred             eEEEEEeCCCCCHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHCCcccCCCChHhEEEeCCCCEEEEEEEeeeecCCCc--
Confidence                                        36789999999999999999999999999999999999999998764332  


Q ss_pred             ccccccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCC
Q 045449          730 SKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       730 ~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                       .....+||+.|+|||++.+..|+.++||||+||++|++++|+.||.+.
T Consensus       219 -~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~ell~g~~pF~g~  266 (464)
T 3ttj_A          219 -MMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGR  266 (464)
T ss_dssp             -CC----CCCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             -ccCCCcccccccCHHHHcCCCCCHHHHHHHHHHHHHHHHhCCCCCCCC
Confidence             234568999999999999999999999999999999999999999764

>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens}

Probab=99.90  E-value=3.4e-25  Score=243.63  Aligned_cols=147  Identities=30%  Similarity=0.355  Sum_probs=125.9

Q ss_pred             ccCCccceeeccC------------CeEEEEEEehHhh---HHHHHHHHHHHHHHhhcchhhHHH---------------
Q 045449          628 DRFSENNLIGIGN------------GMEVAVKVFHQQY---ERALKSFEDECEVRKRIRHRNLVK---------------  677 (823)
Q Consensus       628 ~~f~~~~~lg~g~------------~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~---------------  677 (823)
                      ++|...+.||.|+            +..||||++....   ....+.+.+|++++++++|||||+               
T Consensus        15 ~~y~i~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~~~~lv~   94 (384)
T 4fr4_A           15 DHFEILRAIGKGSFGKVCIVQKNDTKKMYAMKYMNKQKCVERNEVRNVFKELQIMQGLEHPFLVNLWYSFQDEEDMFMVV   94 (384)
T ss_dssp             GGEEEEEEEECCTTCCEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             HHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEehhhcccHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEEEE
Confidence            5788888999886            5669999997543   223467889999999999999998               


Q ss_pred             -------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccc
Q 045449          678 -------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQ  732 (823)
Q Consensus       678 -------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~  732 (823)
                                               +++|++.+|+|+|+.||+||||||+|||++.++.+||+|||+|+......   ..
T Consensus        95 e~~~gg~L~~~l~~~~~l~~~~~~~~~~qi~~aL~~LH~~givHrDlkp~NIll~~~g~vkL~DFG~a~~~~~~~---~~  171 (384)
T 4fr4_A           95 DLLLGGDLRYHLQQNVHFKEETVKLFICELVMALDYLQNQRIIHRDMKPDNILLDEHGHVHITDFNIAAMLPRET---QI  171 (384)
T ss_dssp             CCCTTEEHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEECCTTC---CB
T ss_pred             ecCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCceeccCcHHHeEECCCCCEEEeccceeeeccCCC---ce
Confidence                                     46799999999999999999999999999999999999999998765432   23


Q ss_pred             cccccCCCcCcccccCC---CccccccceehhhhhhccccCCCCCcCC
Q 045449          733 TQTLATIGYMAPEYGTK---GRVSTRGDVCSFGIISGGKETRSMTVGE  777 (823)
Q Consensus       733 ~~~~gt~~y~aPE~~~~---~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~  777 (823)
                      ...+||+.|+|||++..   ..|+.++||||+||++|++++|..||..
T Consensus       172 ~~~~gt~~Y~aPE~~~~~~~~~~~~~~DiwSlG~il~elltG~~Pf~~  219 (384)
T 4fr4_A          172 TTMAGTKPYMAPEMFSSRKGAGYSFAVDWWSLGVTAYELLRGRRPYHI  219 (384)
T ss_dssp             CCCCSCGGGCCGGGTCCCSSCCBCTTHHHHHHHHHHHHHHHSSCSSCC
T ss_pred             eccCCCccccCCeeeccCCCCCCCccceeechHHHHHHHHhCCCCCCC
Confidence            45689999999999864   4589999999999999999999999964

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*

Probab=99.90  E-value=1.5e-25  Score=242.26  Aligned_cols=163  Identities=37%  Similarity=0.534  Sum_probs=137.2

Q ss_pred             ccccccCHHHHHHHhccCCccceeeccC-----------CeEEEEEEehHhhH-HHHHHHHHHHHHHhhcchhhHHH---
Q 045449          613 QAIRRFSYHELLRATDRFSENNLIGIGN-----------GMEVAVKVFHQQYE-RALKSFEDECEVRKRIRHRNLVK---  677 (823)
Q Consensus       613 ~~~~~~~~~~l~~at~~f~~~~~lg~g~-----------~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~---  677 (823)
                      ...+.|++.++..++++|...+.||.|+           +..||||++..... .....|.+|++++++++||||++   
T Consensus        15 ~~~~~~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~   94 (326)
T 3uim_A           15 GQLKRFSLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRG   94 (326)
T ss_dssp             CCCEECCTHHHHTTTTSSCSTTEEECCSSSEEEEECCSSSCCEEEEECCC-----CCCHHHHHHHGGGTCCCTTBCCCCE
T ss_pred             CccceecHHHHHHHhhccccceeEecCCCcEEEEEEecCCCEEEEEEeccccCchHHHHHHHHHHHHHhccCCCccceEE
Confidence            4567899999999999999999999986           56699999975542 22237899999999999999998   


Q ss_pred             -----------------------------------------HHHHHHHHhhhcCCC---CEEeccCCCCCEEeCCCCcEE
Q 045449          678 -----------------------------------------IISSSLEYLHFGHSI---PIIHCDLKPSNVLLDEDMVAH  713 (823)
Q Consensus       678 -----------------------------------------~~~~~l~~L~~~h~~---~ivHrdlk~~NiLl~~~~~~k  713 (823)
                                                               ++.|++.+|+|+|+.   +|+||||||+||+++.++.+|
T Consensus        95 ~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~ivH~Dlkp~Nil~~~~~~~k  174 (326)
T 3uim_A           95 FCMTPTERLLVYPYMANGSVASCLRERPESQPPLDWPKRQRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAV  174 (326)
T ss_dssp             EECCSSCCEEEEECCTTCBHHHHHHCCSTTCCCCCHHHHHHHHHHHHHHHHHHHHSSSSCEECCCCSGGGEEECTTCCEE
T ss_pred             EEecCCceEEEEEeccCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeCCCchhhEEECCCCCEE
Confidence                                                     345677777778877   999999999999999999999


Q ss_pred             EeecccccccCCCCccccccccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcC
Q 045449          714 ISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVG  776 (823)
Q Consensus       714 l~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~  776 (823)
                      |+|||+++....... .......||+.|+|||++.+..++.++||||+||+++++++|..||.
T Consensus       175 l~Dfg~~~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~  236 (326)
T 3uim_A          175 VGDFGLAKLMDYKDT-HVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFD  236 (326)
T ss_dssp             ECCCSSCEECCSSSS-CEECCCCSCGGGCCHHHHHHSEECHHHHHHHHHHHHHHHHHCCCSBC
T ss_pred             eccCccccccCcccc-cccccccCCcCccCHHHhccCCCCccccchhHHHHHHHHHhCCCccc
Confidence            999999987643332 22344569999999999988889999999999999999999999985

>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}

Probab=99.90  E-value=2.5e-25  Score=242.64  Aligned_cols=150  Identities=24%  Similarity=0.250  Sum_probs=124.1

Q ss_pred             hccCCccceeeccC------------CeEEEEEEehHhh---HHHHHHHHHHHHHHhhc-chhhHHH-------------
Q 045449          627 TDRFSENNLIGIGN------------GMEVAVKVFHQQY---ERALKSFEDECEVRKRI-RHRNLVK-------------  677 (823)
Q Consensus       627 t~~f~~~~~lg~g~------------~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l-~h~niv~-------------  677 (823)
                      .++|...+.||+|+            +..||||++....   ....+.+.+|++++.++ +||||++             
T Consensus        22 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AvK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~~~l  101 (353)
T 3txo_A           22 IDNFEFIRVLGKGSFGKVMLARVKETGDLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLFCCFQTPDRLFF  101 (353)
T ss_dssp             -CCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHHTTHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEE
T ss_pred             hhheEEEEEEeeCCCEEEEEEEEcCCCCEEEEEEEEHHHhcchhHHHHHHHHHHHHHhccCCCceeeEEEEEEeCCEEEE
Confidence            46888889999986            5679999997653   23446788999999988 7999998             


Q ss_pred             ---------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccc
Q 045449          678 ---------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLS  730 (823)
Q Consensus       678 ---------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~  730 (823)
                                                 +++|++.+|+|+|+.+|+||||||+|||++.++++||+|||+|+......  .
T Consensus       102 v~E~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~givHrDlkp~NILl~~~g~ikL~DFG~a~~~~~~~--~  179 (353)
T 3txo_A          102 VMEFVNGGDLMFHIQKSRRFDEARARFYAAEIISALMFLHDKGIIYRDLKLDNVLLDHEGHCKLADFGMCKEGICNG--V  179 (353)
T ss_dssp             EEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTSCEEECCCTTCBCSCC-----
T ss_pred             EEeCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCCcccCCCHHHEEECCCCCEEEccccceeecccCC--c
Confidence                                       46789999999999999999999999999999999999999998643222  2


Q ss_pred             cccccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCC
Q 045449          731 KQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       731 ~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      .....+||+.|+|||++.+..|+.++||||+||++|+|++|..||...
T Consensus       180 ~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~  227 (353)
T 3txo_A          180 TTATFCGTPDYIAPEILQEMLYGPAVDWWAMGVLLYEMLCGHAPFEAE  227 (353)
T ss_dssp             ------CCGGGCCHHHHHHHHCTTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             cccccCCCcCeEChhhcCCCCcCCccCCCcchHHHHHHHhCCCCCCCC
Confidence            234568999999999999889999999999999999999999999654

>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}

Probab=99.90  E-value=6e-25  Score=249.16  Aligned_cols=144  Identities=29%  Similarity=0.379  Sum_probs=112.5

Q ss_pred             hccCCccceeeccC------------CeEEEEEEehHh--hHHHHHHHHHHHHHHhhcchhhHHH---------------
Q 045449          627 TDRFSENNLIGIGN------------GMEVAVKVFHQQ--YERALKSFEDECEVRKRIRHRNLVK---------------  677 (823)
Q Consensus       627 t~~f~~~~~lg~g~------------~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~---------------  677 (823)
                      .++|...+.||.|+            +..||||++...  .....+++.+|++++++++|||||+               
T Consensus        52 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~~  131 (458)
T 3rp9_A           52 PDRYEIRHLIGTGSYGHVCEAYDKLEKRVVAIKKILRVFEDLIDCKRILREIAILNRLNHDHVVKVLDIVIPKDVEKFDE  131 (458)
T ss_dssp             CTTEEECCC-------CEEEEEECC--CEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCCC
T ss_pred             CCCeEEeeEeeecCCeEEEEEEECCCCcEEEEEEechhhcCHHHHHHHHHHHHHHHhCCCCCCCceEEEEecCCcccCce
Confidence            36788888888875            567999998643  2445578999999999999999997               


Q ss_pred             -----------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCc
Q 045449          678 -----------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQ  728 (823)
Q Consensus       678 -----------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~  728 (823)
                                                   ++.|++.+|+|+|+.+|+||||||+|||++.++.+||+|||+|+.......
T Consensus       132 ~~lv~e~~~~~L~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~~~  211 (458)
T 3rp9_A          132 LYVVLEIADSDFKKLFRTPVYLTELHIKTLLYNLLVGVKYVHSAGILHRDLKPANCLVNQDCSVKVCDFGLARTVDYPEN  211 (458)
T ss_dssp             EEEEECCCSEEHHHHHHSSCCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTCCEEECCCTTCBCTTSCTT
T ss_pred             EEEEEeccccchhhhcccCCCCCHHHHHHHHHHHHHHHHHHHhCCcCCCCCChhhEEECCCCCEeecccccchhccCccc
Confidence                                         467899999999999999999999999999999999999999987642211


Q ss_pred             c-------------------------ccccccccCCCcCccccc-CCCccccccceehhhhhhccccC
Q 045449          729 L-------------------------SKQTQTLATIGYMAPEYG-TKGRVSTRGDVCSFGIISGGKET  770 (823)
Q Consensus       729 ~-------------------------~~~~~~~gt~~y~aPE~~-~~~~~~~~~Dv~S~Gvv~~~~~~  770 (823)
                      .                         ...+..+||+.|+|||++ ....|+.++||||+||++|+|++
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~~DiwSlG~il~ellt  279 (458)
T 3rp9_A          212 GNSQLPISPREDDMNLVTFPHTKNLKRQLTGHVVTRWYRAPELILLQENYTEAIDVWSIGCIFAELLN  279 (458)
T ss_dssp             CCCCCC---------------------------CCCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHT
T ss_pred             cccccccCccccccccccccccccccccccCCcccccccChHHhhCCCCCCcHhHHHHHHHHHHHHHH
Confidence            0                         123456789999999976 45679999999999999999998

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.90  E-value=6.2e-24  Score=220.41  Aligned_cols=193  Identities=22%  Similarity=0.263  Sum_probs=162.2

Q ss_pred             CCCccceeeeeCCCCCcEEEEEcCCCCCccccCcccCCCCCCcEEEccCCCCCCCCCCCCCCCCCCCEEECCCCcCcCCC
Q 045449           37 TSVCIWIGITCDVNSHRVIGLNISSFNLQGTITPQLGNLSSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQLFGSL  116 (823)
Q Consensus        37 ~~~c~w~gv~c~~~~~~v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~  116 (823)
                      .+||.|.|++|..   ..+.+++++++++ .+|..+.  ++|++|+|++|+|++..+..|.++++|++|+|++|.|++..
T Consensus         2 ~~Cp~~~gC~C~~---~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~   75 (251)
T 3m19_A            2 KTCETVTGCTCNE---GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLS   75 (251)
T ss_dssp             --CHHHHSSEEEG---GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCC
T ss_pred             ccCCCCCceEcCC---CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccC
Confidence            3699999999953   3457899999998 5666665  68999999999999999999999999999999999999999


Q ss_pred             chhhhcCCCCcEEecccccccCccCccccCCCCCCccccccceeeeccceeeccCccccccchhhHHHHHhhcCCCcccC
Q 045449          117 SSFIFNMSSMTTIDLSINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEIGNLTKLKEIISTITNSTVCEI  196 (823)
Q Consensus       117 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~~l~~n~~~~~i  196 (823)
                      +..|.++++|++|+|++|++++..+..       |..+++|++|+|++|++++..+.                       
T Consensus        76 ~~~~~~l~~L~~L~L~~n~l~~~~~~~-------~~~l~~L~~L~L~~N~l~~~~~~-----------------------  125 (251)
T 3m19_A           76 AGVFDDLTELGTLGLANNQLASLPLGV-------FDHLTQLDKLYLGGNQLKSLPSG-----------------------  125 (251)
T ss_dssp             TTTTTTCTTCCEEECTTSCCCCCCTTT-------TTTCTTCCEEECCSSCCCCCCTT-----------------------
T ss_pred             HhHhccCCcCCEEECCCCcccccChhH-------hcccCCCCEEEcCCCcCCCcChh-----------------------
Confidence            999999999999999999998554443       48899999999999999854332                       


Q ss_pred             CcccCCcchhhhhccccccccCCccccccCCCCCcEEEccCCcccccCCcccccCCCCccEEEeeccccccc
Q 045449          197 PREIGNLPYLARLALATNNLVGVVPVTIFNMSALKEISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGT  268 (823)
Q Consensus       197 p~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~lp~~~~~~l~~L~~L~Ls~N~l~~~  268 (823)
                        .|..+++|++|+|++|+|++..+..|.++++|++|+|++|.++ .+|...+..+++|++|+|++|.+.+.
T Consensus       126 --~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          126 --VFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             --TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             --HhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCC-ccCHHHHhCCCCCCEEEeeCCceeCC
Confidence              3455667888999999999888878999999999999999998 45544445589999999999999865

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.90  E-value=6.6e-24  Score=227.55  Aligned_cols=205  Identities=18%  Similarity=0.142  Sum_probs=123.2

Q ss_pred             CCCCeEEeecccccccCCCcc--CCCcccCcccccCccccCCCCcccccccccCCCCceEEEeecCCCCccCCccccccc
Q 045449          277 SKLSDLELGENLFSGFIPNTI--GNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGILPKSIGNFS  354 (823)
Q Consensus       277 ~~L~~L~Ls~N~l~~~~p~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~  354 (823)
                      ++|++|++++|.+++..|..+  ..+++|++|+|++|.+++..+... ...+..+++|++|+|++|.++           
T Consensus        91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~-~~~~~~~~~L~~L~Ls~n~l~-----------  158 (310)
T 4glp_A           91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLA-ELQQWLKPGLKVLSIAQAHSP-----------  158 (310)
T ss_dssp             SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHH-HHHTTBCSCCCEEEEECCSSC-----------
T ss_pred             CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhH-HHHhhhccCCCEEEeeCCCcc-----------
Confidence            446666666666666666555  556666666666666554322110 012234445555555555544           


Q ss_pred             cccceEEecCCcceeccCccccCcccccEEEcccCcCCCC--ch--hcccccCCCCEEEccCCCCCCcchH----hhhcC
Q 045449          355 LSLETILMANCSISGNIPQVVGNLSNLLVLELGGNNLTGP--IP--VTFSQLQTLQAFDLTRNKLAGPITD----ELCHL  426 (823)
Q Consensus       355 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~--~p--~~~~~l~~L~~L~Ls~N~l~~~~p~----~~~~l  426 (823)
                                    +..|..|+.+++|++|||++|++.+.  ++  ..+..+++|++|+|++|+++. ++.    .+.++
T Consensus       159 --------------~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l  223 (310)
T 4glp_A          159 --------------AFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAAG  223 (310)
T ss_dssp             --------------CCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHT
T ss_pred             --------------hhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcC
Confidence                          44445555556666666666665542  11  223566677777777777752 222    24566


Q ss_pred             CCCCEEEcccCcCcccccccccCC---CCCCeEeccCCccccccchhhhccCCCcEEeccccccccccCccccCCCCCcE
Q 045449          427 ARLHSLVLQGNKFSGSIPSCLGNL---TSVRVLYLGLNIFTSVLSSTIWNLKDILFIDVSSNFLDGPLSLDIGNLKVVIG  503 (823)
Q Consensus       427 ~~L~~L~Ls~N~l~g~~p~~~~~l---~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~  503 (823)
                      ++|++|||++|++++.+|..+..+   ++|++|+|++|+++. +|..+.  ++|+.|||++|++++. |. +..++.|+.
T Consensus       224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~-lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~  298 (310)
T 4glp_A          224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQ-VPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDN  298 (310)
T ss_dssp             CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCS-CCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSC
T ss_pred             CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCc-hhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccE
Confidence            777777777777777667666665   577777777777773 555553  6778888888887763 22 466777888


Q ss_pred             EEcccCCCCC
Q 045449          504 LDFSRNNLSG  513 (823)
Q Consensus       504 L~ls~N~l~g  513 (823)
                      |++++|+++.
T Consensus       299 L~L~~N~l~~  308 (310)
T 4glp_A          299 LTLDGNPFLV  308 (310)
T ss_dssp             EECSSTTTSC
T ss_pred             EECcCCCCCC
Confidence            8888888763

>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7

Probab=99.90  E-value=1.5e-24  Score=233.19  Aligned_cols=146  Identities=27%  Similarity=0.332  Sum_probs=126.6

Q ss_pred             ccCCccceeeccC------------CeEEEEEEehHhhH---HHHHHHHHHHHHHhhcchhhHHH---------------
Q 045449          628 DRFSENNLIGIGN------------GMEVAVKVFHQQYE---RALKSFEDECEVRKRIRHRNLVK---------------  677 (823)
Q Consensus       628 ~~f~~~~~lg~g~------------~~~vavK~~~~~~~---~~~~~~~~E~~~l~~l~h~niv~---------------  677 (823)
                      ++|...+.||+|+            |+.||||++.....   ...+.+.+|+.++++++||||++               
T Consensus         6 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~~~lv~   85 (318)
T 1fot_A            6 QDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQDAQQIFMIM   85 (318)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCBTTBCCEEEEEECSSEEEEEE
T ss_pred             HHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhhCCCCCCceEeEEEEeCCEEEEEE
Confidence            5677888888885            66799999976532   23467889999999999999998               


Q ss_pred             -------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccc
Q 045449          678 -------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQ  732 (823)
Q Consensus       678 -------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~  732 (823)
                                               +++|++.+|+|+|+.+|+||||||+||+++.++.+||+|||+++.....     .
T Consensus        86 e~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~g~~kL~Dfg~a~~~~~~-----~  160 (318)
T 1fot_A           86 DYIEGGELFSLLRKSQRFPNPVAKFYAAEVCLALEYLHSKDIIYRDLKPENILLDKNGHIKITDFGFAKYVPDV-----T  160 (318)
T ss_dssp             CCCCSCBHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHHTTTEECCCCCGGGEEECTTSCEEECCCSSCEECSSC-----B
T ss_pred             eCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCChheEEEcCCCCEEEeecCcceecCCc-----c
Confidence                                     3678999999999999999999999999999999999999999875432     2


Q ss_pred             cccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCC
Q 045449          733 TQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       733 ~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      ...+||+.|+|||++.+..++.++||||+||++|++++|..||.+.
T Consensus       161 ~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~  206 (318)
T 1fot_A          161 YTLCGTPDYIAPEVVSTKPYNKSIDWWSFGILIYEMLAGYTPFYDS  206 (318)
T ss_dssp             CCCCSCTTTCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCS
T ss_pred             ccccCCccccCHhHhcCCCCCcccchhhhHHHHHHHHhCCCCCCCC
Confidence            3467999999999999999999999999999999999999998654

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}

Probab=99.90  E-value=4.9e-25  Score=234.98  Aligned_cols=149  Identities=27%  Similarity=0.388  Sum_probs=122.3

Q ss_pred             ccCCccceeeccC------------CeEEEEEEehHhhH--------------------------HHHHHHHHHHHHHhh
Q 045449          628 DRFSENNLIGIGN------------GMEVAVKVFHQQYE--------------------------RALKSFEDECEVRKR  669 (823)
Q Consensus       628 ~~f~~~~~lg~g~------------~~~vavK~~~~~~~--------------------------~~~~~~~~E~~~l~~  669 (823)
                      ++|...+.||.|+            +..||||++.....                          ...+.+.+|++++++
T Consensus        13 ~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~   92 (298)
T 2zv2_A           13 NQYTLKDEIGKGSYGVVKLAYNENDNTYYAMKVLSKKKLIRQAGFPRRPPPRGTRPAPGGCIQPRGPIEQVYQEIAILKK   92 (298)
T ss_dssp             TTEEEEEEEEC--CCEEEEEEETTTTEEEEEEEEECC-------------------------------CHHHHHHHHHHT
T ss_pred             cceEEEeEEeecCCEEEEEEEECCCCcEEEEEEeehhhhhhhcccccccccccccccccccccccchHHHHHHHHHHHHh
Confidence            5788888898885            57799999864321                          123578999999999


Q ss_pred             cchhhHHH-----------------------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCC
Q 045449          670 IRHRNLVK-----------------------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDE  708 (823)
Q Consensus       670 l~h~niv~-----------------------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~  708 (823)
                      ++||||++                                         ++.|++++|+|+|+.+|+||||||+||+++.
T Consensus        93 l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dlkp~Nil~~~  172 (298)
T 2zv2_A           93 LDHPNVVKLVEVLDDPNEDHLYMVFELVNQGPVMEVPTLKPLSEDQARFYFQDLIKGIEYLHYQKIIHRDIKPSNLLVGE  172 (298)
T ss_dssp             CCCTTBCCEEEEEECSSSSEEEEEEECCTTCBSCCSSCSSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECT
T ss_pred             CCCCCCCeEEEEEEcCCCCEEEEEEecCCCCcHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHEEECC
Confidence            99999998                                         4678999999999999999999999999999


Q ss_pred             CCcEEEeecccccccCCCCccccccccccCCCcCcccccCCCc---cccccceehhhhhhccccCCCCCcCCC
Q 045449          709 DMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGR---VSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       709 ~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~---~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      ++.+||+|||+++.......  ......||+.|+|||++.+..   ++.++||||+||++|++++|..||.+.
T Consensus       173 ~~~~kl~Dfg~~~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~  243 (298)
T 2zv2_A          173 DGHIKIADFGVSNEFKGSDA--LLSNTVGTPAFMAPESLSETRKIFSGKALDVWAMGVTLYCFVFGQCPFMDE  243 (298)
T ss_dssp             TSCEEECCCTTCEECSSSSC--EECCCCSCGGGCCGGGCCTTCCCEESHHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             CCCEEEecCCCccccccccc--cccCCcCCccccChhhhccCCCCCCCchhhhHhHHHHHHHHHHCCCCCCCc
Confidence            99999999999987654322  233467999999999987655   478899999999999999999999764

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A

Probab=99.90  E-value=6.6e-25  Score=241.28  Aligned_cols=152  Identities=28%  Similarity=0.369  Sum_probs=127.2

Q ss_pred             ccCCccceeeccC-------------------CeEEEEEEehHhh-HHHHHHHHHHHHHHhhc-chhhHHH---------
Q 045449          628 DRFSENNLIGIGN-------------------GMEVAVKVFHQQY-ERALKSFEDECEVRKRI-RHRNLVK---------  677 (823)
Q Consensus       628 ~~f~~~~~lg~g~-------------------~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l-~h~niv~---------  677 (823)
                      ++|...+.||+|+                   +..||||+++... ....+++.+|+++++++ +||||++         
T Consensus        81 ~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~~  160 (370)
T 2psq_A           81 DKLTLGKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQDG  160 (370)
T ss_dssp             GGEEEEEEESCCSSSEEEEEEEETCSTTCTTCEEEEEEEECCTTCBHHHHHHHHHHHHHHHHSCCCTTBCCEEEEECSSS
T ss_pred             HHCEeeeEEeeCCCeeEEEEEEecccCcCcCcceeEEEEEecCCcCHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEccCC
Confidence            5677778888875                   1248999997543 45567899999999999 8999998         


Q ss_pred             -----------------------------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCC
Q 045449          678 -----------------------------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDM  710 (823)
Q Consensus       678 -----------------------------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~  710 (823)
                                                                     ++.|++.+|+|+|+.+|+||||||+|||++.++
T Consensus       161 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~~  240 (370)
T 2psq_A          161 PLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQKCIHRDLAARNVLVTENN  240 (370)
T ss_dssp             SCEEEEECCTTCBHHHHHHHTCCC-----------CCCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECTTC
T ss_pred             CEEEEEEcCCCCCHHHHHHhhCCccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhCCeeccccchhhEEECCCC
Confidence                                                           134788899999999999999999999999999


Q ss_pred             cEEEeecccccccCCCCccccccccccCCCcCcccccCCCccccccceehhhhhhccccC-CCCCcCCCc
Q 045449          711 VAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKET-RSMTVGETC  779 (823)
Q Consensus       711 ~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~-~~~~~~~~~  779 (823)
                      .+||+|||+|+...............+|+.|+|||++.+..|+.++|||||||++|++++ |..||.+..
T Consensus       241 ~~kl~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DvwslG~il~ellt~g~~p~~~~~  310 (370)
T 2psq_A          241 VMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIP  310 (370)
T ss_dssp             CEEECCCSSCEETTCCCTTCTTTTTTSCGGGCCHHHHHTCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCC
T ss_pred             CEEEccccCCcccCcccceecccCCCcccceECHhHhcCCCCCcHHHHHHHHHHHHHHHcCCCCCCCCCC
Confidence            999999999987654443333344567899999999999999999999999999999998 899987653

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*

Probab=99.90  E-value=1.3e-24  Score=232.73  Aligned_cols=165  Identities=33%  Similarity=0.465  Sum_probs=139.7

Q ss_pred             cccccCHHHHHHHhccCCcc------ceeeccC----------CeEEEEEEehHhh----HHHHHHHHHHHHHHhhcchh
Q 045449          614 AIRRFSYHELLRATDRFSEN------NLIGIGN----------GMEVAVKVFHQQY----ERALKSFEDECEVRKRIRHR  673 (823)
Q Consensus       614 ~~~~~~~~~l~~at~~f~~~------~~lg~g~----------~~~vavK~~~~~~----~~~~~~~~~E~~~l~~l~h~  673 (823)
                      ....|++.++.+++++|...      +.||.|+          +..||||++....    ....+.|.+|++++++++||
T Consensus        11 ~~~~~~~~~l~~~~~~f~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~   90 (307)
T 2nru_A           11 RFHSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYVNNTTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQHE   90 (307)
T ss_dssp             CCEECCHHHHHHHTTTTCCSBTTTTCCEEEECSSEEEEEEESSSCEEEEEEECCCTTSCTTTHHHHHHHHHHHHHHCCCT
T ss_pred             CCCcccHHHHHHHHcccccccccccCCccccCCCeEEEEEEECCceEEEEEEecccCcchHHHHHHHHHHHHHHHhcCCC
Confidence            45789999999999999988      8899986          5679999986422    34457899999999999999


Q ss_pred             hHHH-------------------------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCC
Q 045449          674 NLVK-------------------------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDM  710 (823)
Q Consensus       674 niv~-------------------------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~  710 (823)
                      ||++                                           ++.|++.+|+|+|+.+|+||||||+||+++.++
T Consensus        91 ~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~i~H~dlkp~Nili~~~~  170 (307)
T 2nru_A           91 NLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGTPPLSWHMRCKIAQGAANGINFLHENHHIHRDIKSANILLDEAF  170 (307)
T ss_dssp             TBCCEEEEECSSSSCEEEEECCTTCBHHHHHHTGGGCCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECTTC
T ss_pred             CeEEEEEEEecCCceEEEEEecCCCcHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhcCCeecCCCCHHHEEEcCCC
Confidence            9998                                           356888999999999999999999999999999


Q ss_pred             cEEEeecccccccCCCCccccccccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCCc
Q 045449          711 VAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGETC  779 (823)
Q Consensus       711 ~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~~  779 (823)
                      .+||+|||+++...............||+.|+|||++.+ .++.++||||+||+++++++|..||....
T Consensus       171 ~~kl~Dfg~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~-~~~~~~Dv~slG~il~~l~~g~~p~~~~~  238 (307)
T 2nru_A          171 TAKISDFGLARASEKFAQTVMTSRIVGTTAYMAPEALRG-EITPKSDIYSFGVVLLEIITGLPAVDEHR  238 (307)
T ss_dssp             CEEECCCTTCEECCSCSSCEECSSCCSCGGGCCHHHHTT-EECTHHHHHHHHHHHHHHHHCCCSBCTTB
T ss_pred             cEEEeecccccccccccccccccccCCCcCcCChHHhcC-CCCccchhHHHHHHHHHHHHCCCCcccCc
Confidence            999999999987654333223344679999999998764 58999999999999999999999987643

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.90  E-value=6.7e-24  Score=227.49  Aligned_cols=201  Identities=16%  Similarity=0.161  Sum_probs=166.0

Q ss_pred             CCCceEEEeecCCCCccCCccc--cccccccceEEecCCcceeccC----ccccCcccccEEEcccCcCCCCchhccccc
Q 045449          329 CKKLKVLIVTGNPLDGILPKSI--GNFSLSLETILMANCSISGNIP----QVVGNLSNLLVLELGGNNLTGPIPVTFSQL  402 (823)
Q Consensus       329 l~~L~~L~Ls~N~l~~~~p~~~--~~~~~~L~~L~L~~N~l~~~~p----~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l  402 (823)
                      +++|++|++++|.+++..|..+  ..+ .+|++|++++|.+++..+    ..+..+++|++|+|++|++++..|..|..+
T Consensus        90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~-~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l  168 (310)
T 4glp_A           90 YSRLKELTLEDLKITGTMPPLPLEATG-LALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAF  168 (310)
T ss_dssp             HSCCCEEEEESCCCBSCCCCCSSSCCC-BCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCC
T ss_pred             cCceeEEEeeCCEeccchhhhhhhccC-CCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccC
Confidence            4568888888888888888777  666 688889999988887655    345679999999999999998888999999


Q ss_pred             CCCCEEEccCCCCCCc--ch--HhhhcCCCCCEEEcccCcCcccccc----cccCCCCCCeEeccCCccccccchhhhcc
Q 045449          403 QTLQAFDLTRNKLAGP--IT--DELCHLARLHSLVLQGNKFSGSIPS----CLGNLTSVRVLYLGLNIFTSVLSSTIWNL  474 (823)
Q Consensus       403 ~~L~~L~Ls~N~l~~~--~p--~~~~~l~~L~~L~Ls~N~l~g~~p~----~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l  474 (823)
                      ++|++|+|++|++.+.  ++  ..+..+++|++|+|++|+++. +|.    .++.+++|++|+|++|++++.+|..+..+
T Consensus       169 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~  247 (310)
T 4glp_A          169 PALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRC  247 (310)
T ss_dssp             TTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSC
T ss_pred             CCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhc
Confidence            9999999999999763  22  224689999999999999973 333    35788999999999999999988888777


Q ss_pred             ---CCCcEEeccccccccccCccccCCCCCcEEEcccCCCCCCCCCcccCccCCCCCCCCCCCcccccCCccc
Q 045449          475 ---KDILFIDVSSNFLDGPLSLDIGNLKVVIGLDFSRNNLSGDIPITIGEGEIPRGGPFANLTAKSFMGNELL  544 (823)
Q Consensus       475 ---~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~ip~~~~~g~ip~~~~~~~~~~~~~~~n~~~  544 (823)
                         ++|++|+|++|.++ .+|..+.  +.|+.|||++|++++.          |....+..+..+.+.+|+..
T Consensus       248 ~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~----------~~~~~l~~L~~L~L~~N~l~  307 (310)
T 4glp_A          248 MWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA----------PQPDELPEVDNLTLDGNPFL  307 (310)
T ss_dssp             CCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC----------CCTTSCCCCSCEECSSTTTS
T ss_pred             cCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC----------chhhhCCCccEEECcCCCCC
Confidence               69999999999999 7787774  8999999999999952          22234567778889999764

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp}

Probab=99.90  E-value=3.8e-25  Score=235.38  Aligned_cols=151  Identities=28%  Similarity=0.470  Sum_probs=122.7

Q ss_pred             ccCCccceeeccC------------CeEEEEEEehH---hhHHHHHHHHHHHHHHhhcchhhHHH---------------
Q 045449          628 DRFSENNLIGIGN------------GMEVAVKVFHQ---QYERALKSFEDECEVRKRIRHRNLVK---------------  677 (823)
Q Consensus       628 ~~f~~~~~lg~g~------------~~~vavK~~~~---~~~~~~~~~~~E~~~l~~l~h~niv~---------------  677 (823)
                      ++|...+.||.|+            +..||||++..   ......+.|.+|+.++++++||||++               
T Consensus        11 ~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv~   90 (294)
T 4eqm_A           11 ERYKIVDKLGGGGMSTVYLAEDTILNIKVAIKAIFIPPREKEETLKRFEREVHNSSQLSHQNIVSMIDVDEEDDCYYLVM   90 (294)
T ss_dssp             TTEEEEEEEEEETTEEEEEEEETTTCSEEEEEEEECCSSCCHHHHHHHHHHHHHHTTCCBTTBCCEEEEEECSSEEEEEE
T ss_pred             ccEEEEEEEccCCCEEEEEEEECCCCCeEEEEEeccCccccHHHHHHHHHHHHHHhcCCCCCCceEEEeeeeCCeEEEEE
Confidence            5677788888875            56799998843   22455678999999999999999998               


Q ss_pred             -------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccc
Q 045449          678 -------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQ  732 (823)
Q Consensus       678 -------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~  732 (823)
                                               ++.|++.+|+|+|+.+|+||||||+||+++.++.+||+|||+++....... ...
T Consensus        91 e~~~g~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~-~~~  169 (294)
T 4eqm_A           91 EYIEGPTLSEYIESHGPLSVDTAINFTNQILDGIKHAHDMRIVHRDIKPQNILIDSNKTLKIFDFGIAKALSETSL-TQT  169 (294)
T ss_dssp             ECCCSCBHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTSCEEECCCSSSTTC---------
T ss_pred             eCCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCCEEEEeCCCccccccccc-ccc
Confidence                                     357889999999999999999999999999999999999999987643322 223


Q ss_pred             cccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCCc
Q 045449          733 TQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGETC  779 (823)
Q Consensus       733 ~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~~  779 (823)
                      ....||+.|+|||++.+..++.++||||+||++|++++|..||.+..
T Consensus       170 ~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~g~~pf~~~~  216 (294)
T 4eqm_A          170 NHVLGTVQYFSPEQAKGEATDECTDIYSIGIVLYEMLVGEPPFNGET  216 (294)
T ss_dssp             -----CCSSCCHHHHHTCCCCTTHHHHHHHHHHHHHHHSSCSSCSSC
T ss_pred             CccccCccccCHhHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCC
Confidence            34579999999999999999999999999999999999999997643

>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}

Probab=99.90  E-value=5.2e-25  Score=243.01  Aligned_cols=149  Identities=22%  Similarity=0.225  Sum_probs=126.4

Q ss_pred             hccCCccceeeccC------------CeEEEEEEehHhh---HHHHHHHHHHHHHHhhc-chhhHHH-------------
Q 045449          627 TDRFSENNLIGIGN------------GMEVAVKVFHQQY---ERALKSFEDECEVRKRI-RHRNLVK-------------  677 (823)
Q Consensus       627 t~~f~~~~~lg~g~------------~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l-~h~niv~-------------  677 (823)
                      .++|...+.||+|+            ++.||||+++...   ....+.+.+|..++.++ +|||||+             
T Consensus        51 ~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AvK~~~k~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~~~l  130 (396)
T 4dc2_A           51 LQDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMRVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFF  130 (396)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGTC----CCHHHHHHHHHHHHTTCTTBCCEEEEEECSSEEEE
T ss_pred             hhHcEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhcCCCCCcCeeEEEEEECCEEEE
Confidence            36788889999986            5679999997653   33345688999999887 8999998             


Q ss_pred             ---------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccc
Q 045449          678 ---------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLS  730 (823)
Q Consensus       678 ---------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~  730 (823)
                                                 +++|++.+|+|+|+.+|+||||||+|||++.++.+||+|||+|+......  .
T Consensus       131 V~E~~~gg~L~~~l~~~~~l~~~~~~~~~~qi~~aL~~LH~~givHrDLKp~NILl~~~g~ikL~DFGla~~~~~~~--~  208 (396)
T 4dc2_A          131 VIEYVNGGDLMFHMQRQRKLPEEHARFYSAEISLALNYLHERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPG--D  208 (396)
T ss_dssp             EEECCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTSCEEECCCTTCBCCCCTT--C
T ss_pred             EEEcCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCEEeccCCHHHEEECCCCCEEEeecceeeecccCC--C
Confidence                                       46789999999999999999999999999999999999999998633222  1


Q ss_pred             cccccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCC
Q 045449          731 KQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGE  777 (823)
Q Consensus       731 ~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~  777 (823)
                      .....+||+.|+|||++.+..|+.++||||+||++|+|++|..||..
T Consensus       209 ~~~~~~gt~~Y~aPE~l~~~~~~~~~DiwslGvllyell~G~~Pf~~  255 (396)
T 4dc2_A          209 TTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDI  255 (396)
T ss_dssp             CBCCCCBCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSTT
T ss_pred             ccccccCCcccCCchhhcCCCCChHHHHHHHHHHHHHHHhCCCCCcc
Confidence            23457899999999999999999999999999999999999999953

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*

Probab=99.90  E-value=3.2e-25  Score=239.16  Aligned_cols=152  Identities=26%  Similarity=0.371  Sum_probs=125.4

Q ss_pred             hccCCccceeeccC------------CeEEEEEEehHhh-HHHHHHHHHHHHHHhhcchhhHHH----------------
Q 045449          627 TDRFSENNLIGIGN------------GMEVAVKVFHQQY-ERALKSFEDECEVRKRIRHRNLVK----------------  677 (823)
Q Consensus       627 t~~f~~~~~lg~g~------------~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~----------------  677 (823)
                      .++|...+.||+|+            ++.||||++.... ....+.+.+|+.++++++||||++                
T Consensus         6 ~~~y~i~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~e   85 (323)
T 3tki_A            6 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLFLE   85 (323)
T ss_dssp             TTCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC-------CHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEE
T ss_pred             hhhceeeeEEecCCCEEEEEEEECCCCcEEEEEEEEcccccchHHHHHHHHHHHHhCCCCCCCeEEEEEecCCeEEEEEE
Confidence            35788888899886            5679999986433 333467899999999999999998                


Q ss_pred             ------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCcccccc
Q 045449          678 ------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQT  733 (823)
Q Consensus       678 ------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~  733 (823)
                                              ++.|++.+|+|+|+.+|+||||||+||+++.++.+||+|||+++............
T Consensus        86 ~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~aL~~LH~~givH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~  165 (323)
T 3tki_A           86 YCSGGELFDRIEPDIGMPEPDAQRFFHQLMAGVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLN  165 (323)
T ss_dssp             CCTTEEGGGGSBTTTBCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCCTTCEECEETTEECCBC
T ss_pred             cCCCCcHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHCCccccccchHHEEEeCCCCEEEEEeeccceeccCCcccccC
Confidence                                    46789999999999999999999999999999999999999998764333323334


Q ss_pred             ccccCCCcCcccccCCCcc-ccccceehhhhhhccccCCCCCcCCC
Q 045449          734 QTLATIGYMAPEYGTKGRV-STRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       734 ~~~gt~~y~aPE~~~~~~~-~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      ..+||+.|+|||++.+..+ +.++||||+||++|++++|..||...
T Consensus       166 ~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~  211 (323)
T 3tki_A          166 KMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQP  211 (323)
T ss_dssp             SCCSCGGGSCHHHHHCSSBCHHHHHHHHHHHHHHHHHHSSCSCSSS
T ss_pred             CCccCcCccCcHHhccCCCCCCcccHHHHHHHHHHHHhCCCCCCCC
Confidence            5689999999999887775 78899999999999999999999754

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...

Probab=99.90  E-value=2.7e-25  Score=240.35  Aligned_cols=152  Identities=24%  Similarity=0.312  Sum_probs=121.5

Q ss_pred             ccCCccceeeccC------------C----eEEEEEEehHhh-HHHHHHHHHHHHHHhhcchhhHHH-------------
Q 045449          628 DRFSENNLIGIGN------------G----MEVAVKVFHQQY-ERALKSFEDECEVRKRIRHRNLVK-------------  677 (823)
Q Consensus       628 ~~f~~~~~lg~g~------------~----~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~-------------  677 (823)
                      ++|...+.||.|+            +    ..||+|.+.... ....++|.+|++++++++||||++             
T Consensus        15 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~v   94 (327)
T 3poz_A           15 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTSTVQLI   94 (327)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEECC----CCEEEEEEEC-------CHHHHHHHHHHHHHCCBTTBCCEEEEEESSSEEEE
T ss_pred             HHcccceEEeeCCCeEEEEEEEcCCCceEEEEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEeEEEEEEecCCeEEE
Confidence            5677788888886            1    236888886443 344578999999999999999997             


Q ss_pred             ---------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccc
Q 045449          678 ---------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLS  730 (823)
Q Consensus       678 ---------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~  730 (823)
                                                 ++.|++.+|+|+|+.+|+||||||+|||++.++.+||+|||+|+.........
T Consensus        95 ~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~ivH~Dikp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~  174 (327)
T 3poz_A           95 TQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEY  174 (327)
T ss_dssp             EECCTTCBHHHHHHHSTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEEETTEEEECCTTHHHHHTTTCC--
T ss_pred             EEecCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhhCCeeCCCCChheEEECCCCCEEEccCcceeEccCCcccc
Confidence                                       35788999999999999999999999999999999999999999875544433


Q ss_pred             cccccccCCCcCcccccCCCccccccceehhhhhhccccC-CCCCcCCCc
Q 045449          731 KQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKET-RSMTVGETC  779 (823)
Q Consensus       731 ~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~-~~~~~~~~~  779 (823)
                      ......||+.|+|||++.+..++.++|||||||++|++++ |..||....
T Consensus       175 ~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~  224 (327)
T 3poz_A          175 HAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIP  224 (327)
T ss_dssp             -----CCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCC
T ss_pred             cccCCCccccccChHHhccCCCCchhhhhhhHHHHHHHHhcCCCCccCCC
Confidence            3344567889999999999999999999999999999999 999997653

>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A*

Probab=99.90  E-value=1.4e-24  Score=236.20  Aligned_cols=148  Identities=23%  Similarity=0.231  Sum_probs=127.2

Q ss_pred             ccCCccceeeccC------------CeEEEEEEehHhh---HHHHHHHHHHHHHHhhc-chhhHHH--------------
Q 045449          628 DRFSENNLIGIGN------------GMEVAVKVFHQQY---ERALKSFEDECEVRKRI-RHRNLVK--------------  677 (823)
Q Consensus       628 ~~f~~~~~lg~g~------------~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l-~h~niv~--------------  677 (823)
                      ++|...+.||+|+            ++.||||++....   ....+.+.+|+.++.++ +||||++              
T Consensus         9 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~~~lv   88 (345)
T 3a8x_A            9 QDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFFV   88 (345)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGSCSHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEE
T ss_pred             hheEEEEEEEecCCeEEEEEEECCCCCEEEEEEEEhHHhcchHHHHHHHHHHHHHHhcCCCCccCeEEEEEEeCCEEEEE
Confidence            5678888899886            6779999997543   44557789999999988 8999998              


Q ss_pred             --------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCcccc
Q 045449          678 --------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSK  731 (823)
Q Consensus       678 --------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~  731 (823)
                                                +++|++.+|+|+|+.+|+||||||+|||++.++.+||+|||+|+.......  .
T Consensus        89 ~e~~~gg~L~~~l~~~~~l~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~g~~kL~DFG~a~~~~~~~~--~  166 (345)
T 3a8x_A           89 IEYVNGGDLMFHMQRQRKLPEEHARFYSAEISLALNYLHERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPGD--T  166 (345)
T ss_dssp             ECCCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTSCEEECCGGGCBCSCCTTC--C
T ss_pred             EeCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCceecCCCHHHEEECCCCCEEEEeccccccccCCCC--c
Confidence                                      467899999999999999999999999999999999999999986432221  2


Q ss_pred             ccccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCC
Q 045449          732 QTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGE  777 (823)
Q Consensus       732 ~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~  777 (823)
                      ....+||+.|+|||++.+..|+.++||||+||++|++++|..||..
T Consensus       167 ~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~  212 (345)
T 3a8x_A          167 TSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDI  212 (345)
T ss_dssp             BCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTT
T ss_pred             ccccCCCccccCccccCCCCCChHHhHHHHHHHHHHHHhCCCCcCC
Confidence            3456899999999999999999999999999999999999999964

>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II}

Probab=99.89  E-value=1.2e-24  Score=241.25  Aligned_cols=153  Identities=24%  Similarity=0.320  Sum_probs=120.9

Q ss_pred             HhccCCccceeeccC------------CeEEEEEEehHh--hHHHHHHHHHHHHHHhhcc-hhhHHH-------------
Q 045449          626 ATDRFSENNLIGIGN------------GMEVAVKVFHQQ--YERALKSFEDECEVRKRIR-HRNLVK-------------  677 (823)
Q Consensus       626 at~~f~~~~~lg~g~------------~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~-h~niv~-------------  677 (823)
                      ..++|...+.||.|+            |..||||++...  .....+++.+|+.++.++. ||||++             
T Consensus         7 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~l~~~~~~~~~~~~   86 (388)
T 3oz6_A            7 VLRKYELVKKLGKGAYGIVWKSIDRRTGEVVAVKKIFDAFQNSTDAQRTFREIMILTELSGHENIVNLLNVLRADNDRDV   86 (388)
T ss_dssp             HHTTEEEEEC-------CEEEEEETTTCCEEEEEEECC--CCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECTTSSCE
T ss_pred             ccCceEEEEEeeeCCCeEEEEEEECCCCCEEEEEEecccccChHHHHHHHHHHHHHHhccCCCCCCeeeeEEecCCCCEE
Confidence            456788888888875            677999998543  2445577889999999997 999998             


Q ss_pred             ---------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCC---
Q 045449          678 ---------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGED---  727 (823)
Q Consensus       678 ---------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~---  727 (823)
                                                 ++.|++.+|+|+|+.||+||||||+|||++.++.+||+|||+|+......   
T Consensus        87 ~lv~e~~~~~L~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~~~  166 (388)
T 3oz6_A           87 YLVFDYMETDLHAVIRANILEPVHKQYVVYQLIKVIKYLHSGGLLHRDMKPSNILLNAECHVKVADFGLSRSFVNIRRVT  166 (388)
T ss_dssp             EEEEECCSEEHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTCEESSSCCCCC
T ss_pred             EEEecccCcCHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhCCEEeCCCCHHHeEEcCCCCEEecCCccccccccccccc
Confidence                                       35789999999999999999999999999999999999999998753211   


Q ss_pred             ----------------ccccccccccCCCcCcccccCC-CccccccceehhhhhhccccCCCCCcCCC
Q 045449          728 ----------------QLSKQTQTLATIGYMAPEYGTK-GRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       728 ----------------~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                                      .....+..+||+.|+|||++.+ ..|+.++||||+||+++++++|..||.+.
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~  234 (388)
T 3oz6_A          167 NNIPLSINENTENFDDDQPILTDYVATRWYRAPEILLGSTKYTKGIDMWSLGCILGEILCGKPIFPGS  234 (388)
T ss_dssp             CCGGGCCC---------------CCCGGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred             ccccccccccccccccccccccCCcccCCcCCHHHhcCCCCCCChhhHHHHHHHHHHHHhCCCCCCCC
Confidence                            0112344689999999999876 67899999999999999999999999664

>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*

Probab=99.89  E-value=8.6e-25  Score=237.45  Aligned_cols=152  Identities=25%  Similarity=0.256  Sum_probs=128.4

Q ss_pred             HHhccCCccceeeccC------------CeEEEEEEehHhh---HHHHHHHHHHHHHHhhc-chhhHHH-----------
Q 045449          625 RATDRFSENNLIGIGN------------GMEVAVKVFHQQY---ERALKSFEDECEVRKRI-RHRNLVK-----------  677 (823)
Q Consensus       625 ~at~~f~~~~~lg~g~------------~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l-~h~niv~-----------  677 (823)
                      ...++|...+.||+|+            ++.||||+++...   ....+.+..|.+++.++ +||||++           
T Consensus        14 ~~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~iv~l~~~~~~~~~~   93 (345)
T 1xjd_A           14 LKIEDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQTKENL   93 (345)
T ss_dssp             --CTTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEEECSSEE
T ss_pred             CChHHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhHHhhhhhhHHHHHHHHHHHHhcCCCCCCCcEEEEEEeCCEE
Confidence            3457899999999986            6679999997653   22346788899999887 9999998           


Q ss_pred             -----------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCc
Q 045449          678 -----------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQ  728 (823)
Q Consensus       678 -----------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~  728 (823)
                                                   +++|++.+|+|+|+.+|+||||||+|||++.++.+||+|||+|+.......
T Consensus        94 ~lv~E~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~g~vkL~DFG~a~~~~~~~~  173 (345)
T 1xjd_A           94 FFVMEYLNGGDLMYHIQSCHKFDLSRATFYAAEIILGLQFLHSKGIVYRDLKLDNILLDKDGHIKIADFGMCKENMLGDA  173 (345)
T ss_dssp             EEEEECCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTSCEEECCCTTCBCCCCTTC
T ss_pred             EEEEeCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeEeCCCChhhEEECCCCCEEEeEChhhhhcccCCC
Confidence                                         467899999999999999999999999999999999999999986432221


Q ss_pred             cccccccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCC
Q 045449          729 LSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       729 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                        .....+||+.|+|||++.+..|+.++||||+||++|++++|..||.+.
T Consensus       174 --~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~  221 (345)
T 1xjd_A          174 --KTNTFCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQSPFHGQ  221 (345)
T ss_dssp             --CBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             --cccCCCCCcccCChhhhcCCCCCChhhhHHHHHHHHHHhcCCCCCCCC
Confidence              234568999999999999999999999999999999999999999654

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.89  E-value=1.6e-24  Score=235.23  Aligned_cols=253  Identities=13%  Similarity=0.146  Sum_probs=167.0

Q ss_pred             CCcEEEccCCcccccCCcccccCC--CCccEEEeeccccccccCccccCCCCCCeEEeeccccccc-CCCccCCCcccCc
Q 045449          229 ALKEISLLNNSLSGSLPSRIDLSL--PNVETLNLGINSFSGTIPSSITNSSKLSDLELGENLFSGF-IPNTIGNLRNLEF  305 (823)
Q Consensus       229 ~L~~L~Ls~N~l~g~lp~~~~~~l--~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~  305 (823)
                      .++.+++++|.+.   |..+.. +  ++++.|++++|.+.+..+. +..+++|++|+|++|.+++. +|..+..+++|++
T Consensus        48 ~~~~l~l~~~~~~---~~~~~~-~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~  122 (336)
T 2ast_B           48 LWQTLDLTGKNLH---PDVTGR-LLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN  122 (336)
T ss_dssp             TSSEEECTTCBCC---HHHHHH-HHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred             hheeeccccccCC---HHHHHh-hhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence            3677788777765   222222 3  5677777777777665544 44566677777776666544 4555555555555


Q ss_pred             ccccCccccCCCCcccccccccCCCCceEEEeecCCCCccCCccccccccccceEEecCC-cceec-cCccccCcccccE
Q 045449          306 GNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGILPKSIGNFSLSLETILMANC-SISGN-IPQVVGNLSNLLV  383 (823)
Q Consensus       306 L~L~~N~l~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N-~l~~~-~p~~~~~l~~L~~  383 (823)
                      |+|++|.+                             ++..|..+..+ ++|++|++++| .+++. ++..+.++++|++
T Consensus       123 L~L~~~~l-----------------------------~~~~~~~l~~~-~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~  172 (336)
T 2ast_B          123 LSLEGLRL-----------------------------SDPIVNTLAKN-SNLVRLNLSGCSGFSEFALQTLLSSCSRLDE  172 (336)
T ss_dssp             EECTTCBC-----------------------------CHHHHHHHTTC-TTCSEEECTTCBSCCHHHHHHHHHHCTTCCE
T ss_pred             EeCcCccc-----------------------------CHHHHHHHhcC-CCCCEEECCCCCCCCHHHHHHHHhcCCCCCE
Confidence            55555544                             44444444444 45555555555 45442 4555667778888


Q ss_pred             EEcccC-cCCCC-chhcccccC-CCCEEEccCC--CCC-CcchHhhhcCCCCCEEEcccCc-CcccccccccCCCCCCeE
Q 045449          384 LELGGN-NLTGP-IPVTFSQLQ-TLQAFDLTRN--KLA-GPITDELCHLARLHSLVLQGNK-FSGSIPSCLGNLTSVRVL  456 (823)
Q Consensus       384 L~Ls~N-~l~g~-~p~~~~~l~-~L~~L~Ls~N--~l~-~~~p~~~~~l~~L~~L~Ls~N~-l~g~~p~~~~~l~~L~~L  456 (823)
                      |++++| .+++. ++..+..++ +|++|+|++|  .++ +.+|..+..+++|+.|+|++|. +++..+..+..+++|+.|
T Consensus       173 L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L  252 (336)
T 2ast_B          173 LNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHL  252 (336)
T ss_dssp             EECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEE
T ss_pred             EcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEe
Confidence            888888 77754 566677788 8888888888  555 4567777788888888888888 777777788888888888


Q ss_pred             eccCCc-cccccchhhhccCCCcEEeccccccccccCccccCC-CCCcEEEcccCCCCCCCCCccc
Q 045449          457 YLGLNI-FTSVLSSTIWNLKDILFIDVSSNFLDGPLSLDIGNL-KVVIGLDFSRNNLSGDIPITIG  520 (823)
Q Consensus       457 ~Ls~N~-l~~~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l-~~L~~L~ls~N~l~g~ip~~~~  520 (823)
                      ++++|. ++......+..+++|+.|++++| ++.   ..+..+ ..+..|++++|+++|.+|..++
T Consensus       253 ~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~---~~~~~l~~~l~~L~l~~n~l~~~~~~~~~  314 (336)
T 2ast_B          253 SLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPD---GTLQLLKEALPHLQINCSHFTTIARPTIG  314 (336)
T ss_dssp             ECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCT---TCHHHHHHHSTTSEESCCCSCCTTCSSCS
T ss_pred             eCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCH---HHHHHHHhhCcceEEecccCccccCCccc
Confidence            888884 33332336778888999999988 332   233333 2366677899999988777664

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}

Probab=99.89  E-value=1e-24  Score=244.87  Aligned_cols=151  Identities=26%  Similarity=0.373  Sum_probs=128.1

Q ss_pred             HhccCCccceeeccC------------CeEEEEEEehHhh--HHHHHHHHHHHHHHhhcchhhHHH--------------
Q 045449          626 ATDRFSENNLIGIGN------------GMEVAVKVFHQQY--ERALKSFEDECEVRKRIRHRNLVK--------------  677 (823)
Q Consensus       626 at~~f~~~~~lg~g~------------~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~--------------  677 (823)
                      ..++|...+.||.|+            |..||+|++....  ....+.+.+|++++++++||||++              
T Consensus         9 ~~~~Y~i~~~LG~G~fg~V~~~~~~~~~~~~a~K~i~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~lv   88 (444)
T 3soa_A            9 FTEEYQLFEELGKGAFSVVRRCVKVLAGQEYAAMIINTKKLSARDHQKLEREARICRLLKHPNIVRLHDSISEEGHHYLI   88 (444)
T ss_dssp             HHHHEEEEEEEEEC--CEEEEEEETTTTEEEEEEEEESCSCHHHHHHHHHHHHHHHHHCCBTTBCCEEEEEECSSEEEEE
T ss_pred             ccCCeEEEEEeccCCCeEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCcCCCeEEEEEEECCEEEEE
Confidence            356788889999886            5679999986432  344578999999999999999998              


Q ss_pred             --------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeC---CCCcEEEeecccccccCCCCc
Q 045449          678 --------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLD---EDMVAHISDFGIAKLLSGEDQ  728 (823)
Q Consensus       678 --------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~---~~~~~kl~DfGla~~~~~~~~  728 (823)
                                                ++.|++++|+|+|+.+|+||||||+|||++   .++.+||+|||+|+.......
T Consensus        89 ~E~~~gg~L~~~i~~~~~~~e~~~~~i~~qil~aL~~lH~~givHrDlKp~NIll~~~~~~~~vkL~DFG~a~~~~~~~~  168 (444)
T 3soa_A           89 FDLVTGGELFEDIVAREYYSEADASHCIQQILEAVLHCHQMGVVHRNLKPENLLLASKLKGAAVKLADFGLAIEVEGEQQ  168 (444)
T ss_dssp             ECCCBCCBHHHHHHHCSCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCSSTTEEESBSSTTCCEEECCCSSCBCCCTTCC
T ss_pred             EEeCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCCHHHEEEeccCCCCcEEEccCceeEEecCCCc
Confidence                                      467899999999999999999999999998   467899999999987654322


Q ss_pred             cccccccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCC
Q 045449          729 LSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       729 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                        .....+||+.|+|||++.+..|+.++||||+||++|++++|..||.+.
T Consensus       169 --~~~~~~gt~~Y~APE~l~~~~~~~~~DIwSlGvilyell~G~~Pf~~~  216 (444)
T 3soa_A          169 --AWFGFAGTPGYLSPEVLRKDPYGKPVDLWACGVILYILLVGYPPFWDE  216 (444)
T ss_dssp             --BCCCSCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred             --eeecccCCcccCCHHHhcCCCCCCccccHHHHHHHHHHHhCCCCCCCc
Confidence              234567999999999999989999999999999999999999998654

>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...

Probab=99.89  E-value=6.7e-25  Score=239.02  Aligned_cols=146  Identities=23%  Similarity=0.313  Sum_probs=127.1

Q ss_pred             ccCCccceeeccC------------CeEEEEEEehHhhH---HHHHHHHHHHHHHhhcchhhHHH---------------
Q 045449          628 DRFSENNLIGIGN------------GMEVAVKVFHQQYE---RALKSFEDECEVRKRIRHRNLVK---------------  677 (823)
Q Consensus       628 ~~f~~~~~lg~g~------------~~~vavK~~~~~~~---~~~~~~~~E~~~l~~l~h~niv~---------------  677 (823)
                      ++|...+.||.|+            |..||||++.....   ...+.+.+|++++++++||||++               
T Consensus        41 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~  120 (350)
T 1rdq_E           41 DQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVM  120 (350)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             HHCEEEEEeecCcCcEEEEEEECCCCCEEEEEEEEhHHhccHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEcCCEEEEEE
Confidence            5788888888885            56799999975532   23467899999999999999998               


Q ss_pred             -------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccc
Q 045449          678 -------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQ  732 (823)
Q Consensus       678 -------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~  732 (823)
                                               +++|++.+|+|+|+.+|+||||||+|||++.++.+||+|||+++.....     .
T Consensus       121 e~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~g~~kL~DFg~a~~~~~~-----~  195 (350)
T 1rdq_E          121 EYVAGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGR-----T  195 (350)
T ss_dssp             ECCTTCBHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEECSSC-----B
T ss_pred             cCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCcccccCccceEEECCCCCEEEcccccceeccCC-----c
Confidence                                     4678999999999999999999999999999999999999999876432     2


Q ss_pred             cccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCC
Q 045449          733 TQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       733 ~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      ...+||+.|+|||++.+..++.++||||+||++|++++|..||...
T Consensus       196 ~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~  241 (350)
T 1rdq_E          196 WTLCGTPEALAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFAD  241 (350)
T ss_dssp             CCCEECGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             ccccCCccccCHHHhcCCCCCCcCCEecccHhHhHHhhCCCCCCCC
Confidence            3467999999999999999999999999999999999999999764

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B

Probab=99.89  E-value=8.7e-25  Score=239.50  Aligned_cols=150  Identities=27%  Similarity=0.427  Sum_probs=128.0

Q ss_pred             HhccCCccceeeccC------------CeEEEEEEehHhh--HHHHHHHHHHHHHHhhcchhhHHH--------------
Q 045449          626 ATDRFSENNLIGIGN------------GMEVAVKVFHQQY--ERALKSFEDECEVRKRIRHRNLVK--------------  677 (823)
Q Consensus       626 at~~f~~~~~lg~g~------------~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~--------------  677 (823)
                      ..++|...+.||.|+            +..||||++....  ....+.+.+|++++++++||||++              
T Consensus        27 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~lv  106 (362)
T 2bdw_A           27 FSDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLV  106 (362)
T ss_dssp             HHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred             cccCeEEeeEEecCCCeEEEEEEECCCCCEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEE
Confidence            456788889999886            6679999996442  345578999999999999999998              


Q ss_pred             --------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCC---CcEEEeecccccccCCCCc
Q 045449          678 --------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDED---MVAHISDFGIAKLLSGEDQ  728 (823)
Q Consensus       678 --------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~---~~~kl~DfGla~~~~~~~~  728 (823)
                                                ++.|++++|+|+|+.+|+||||||+||+++.+   +.+||+|||+++.......
T Consensus       107 ~e~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~al~~lH~~~ivH~Dlkp~NIll~~~~~~~~~kl~DfG~a~~~~~~~~  186 (362)
T 2bdw_A          107 FDLVTGGELFEDIVAREFYSEADASHCIQQILESIAYCHSNGIVHRNLKPENLLLASKAKGAAVKLADFGLAIEVNDSEA  186 (362)
T ss_dssp             ECCCCSCBHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCSGGGEEESCSSTTCCEEECCCTTCBCCTTCCS
T ss_pred             EecCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeEeccCchHHEEEecCCCCCCEEEeecCcceEecCCcc
Confidence                                      36789999999999999999999999999864   4699999999987653322


Q ss_pred             cccccccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCC
Q 045449          729 LSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       729 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                         ....+||+.|+|||++.+..|+.++||||+||++|++++|..||.+.
T Consensus       187 ---~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~Pf~~~  233 (362)
T 2bdw_A          187 ---WHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDE  233 (362)
T ss_dssp             ---CCCSCSCTTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             ---cccCCCCccccCHHHHccCCCCchhhHHHHHHHHHHHHHCCCCCCCC
Confidence               23467999999999999989999999999999999999999998664

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}

Probab=99.89  E-value=9.7e-25  Score=239.80  Aligned_cols=149  Identities=17%  Similarity=0.128  Sum_probs=123.7

Q ss_pred             HhccCCccceeeccC-----------------CeEEEEEEehHhhHHHHHHHHHHHHHHhhcc---hhhHHH--------
Q 045449          626 ATDRFSENNLIGIGN-----------------GMEVAVKVFHQQYERALKSFEDECEVRKRIR---HRNLVK--------  677 (823)
Q Consensus       626 at~~f~~~~~lg~g~-----------------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~---h~niv~--------  677 (823)
                      ..++|...+.||+|+                 +..||||++.....   .++.+|++++.+++   |+||++        
T Consensus        63 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~---~~~~~e~~~~~~l~~~~~~~iv~~~~~~~~~  139 (365)
T 3e7e_A           63 GSKLVYVHHLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKPANP---WEFYIGTQLMERLKPSMQHMFMKFYSAHLFQ  139 (365)
T ss_dssp             SSSEEEEEEEEEECSSEEEEEEEC-------CCCCEEEEEESSCCH---HHHHHHHHHHHHSCGGGGGGBCCEEEEEECS
T ss_pred             CCEEEEEEEEeeccCCEEEEEEEecCCcccccCcEEEEEEeCCCCh---hHHHHHHHHHHHhhhhhhhhhhhhheeeecC
Confidence            346788888888876                 34589999876543   46777888888776   899887        


Q ss_pred             -------------------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCC-----------C
Q 045449          678 -------------------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDE-----------D  709 (823)
Q Consensus       678 -------------------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~-----------~  709 (823)
                                                           ++.|++.+|+|+|+.+|+||||||+|||++.           +
T Consensus       140 ~~~~lv~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~L~~lH~~~ivHrDiKp~NIll~~~~~~~~~~~~~~  219 (365)
T 3e7e_A          140 NGSVLVGELYSYGTLLNAINLYKNTPEKVMPQGLVISFAMRMLYMIEQVHDCEIIHGDIKPDNFILGNGFLEQDDEDDLS  219 (365)
T ss_dssp             SCEEEEECCCCSCBHHHHHHHHHTSTTCSCCHHHHHHHHHHHHHHHHHHHTTTEECCCCSGGGEEECGGGTCC------C
T ss_pred             CCcEEEEeccCCCcHHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHhhCCeecCCCCHHHEEecccccCcccccccc
Confidence                                                 3578899999999999999999999999998           8


Q ss_pred             CcEEEeecccccccCCCCccccccccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCC
Q 045449          710 MVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGE  777 (823)
Q Consensus       710 ~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~  777 (823)
                      +.+||+|||+|+.+............+||+.|+|||++.+..|+.++|||||||++|++++|+.||..
T Consensus       220 ~~~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~  287 (365)
T 3e7e_A          220 AGLALIDLGQSIDMKLFPKGTIFTAKCETSGFQCVEMLSNKPWNYQIDYFGVAATVYCMLFGTYMKVK  287 (365)
T ss_dssp             TTEEECCCTTCEEGGGSCTTEEECCSSCTTSCCCHHHHTTCCBSTHHHHHHHHHHHHHHHHSSCCCEE
T ss_pred             CCEEEeeCchhhhhhccCCCceeeeecCCCCCCChHHhcCCCCCccccHHHHHHHHHHHHhCCCcccc
Confidence            99999999999765433222334567899999999999999999999999999999999999999854

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A

Probab=99.89  E-value=9.7e-25  Score=238.30  Aligned_cols=151  Identities=25%  Similarity=0.325  Sum_probs=127.1

Q ss_pred             hccCCccceeeccC------------CeEEEEEEehHhhHH-----HHHHHHHHHHHHhhcchhhHHH------------
Q 045449          627 TDRFSENNLIGIGN------------GMEVAVKVFHQQYER-----ALKSFEDECEVRKRIRHRNLVK------------  677 (823)
Q Consensus       627 t~~f~~~~~lg~g~------------~~~vavK~~~~~~~~-----~~~~~~~E~~~l~~l~h~niv~------------  677 (823)
                      .++|...+.||+|+            ++.||||++......     ..+.+.+|++++++++||||++            
T Consensus        23 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~  102 (351)
T 3c0i_A           23 EDVYELCEVIGKGPFSVVRRCINRETGQQFAVKIVDVAKFTSSPGLSTEDLKREASICHMLKHPHIVELLETYSSDGMLY  102 (351)
T ss_dssp             HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHTSSSCCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEE
T ss_pred             ccceEEeeEEeeCCCEEEEEEEECCCCCEEEEEEEEhhhccccccchHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEE
Confidence            35688888999886            677999999654321     2467999999999999999998            


Q ss_pred             --------------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCC---cEEEeecccccc
Q 045449          678 --------------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDM---VAHISDFGIAKL  722 (823)
Q Consensus       678 --------------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~---~~kl~DfGla~~  722 (823)
                                                      ++.|++++|+|+|+.+|+||||||+||+++.++   .+||+|||+++.
T Consensus       103 lv~e~~~g~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~~ivHrDlkp~NIl~~~~~~~~~vkl~Dfg~a~~  182 (351)
T 3c0i_A          103 MVFEFMDGADLCFEIVKRADAGFVYSEAVASHYMRQILEALRYCHDNNIIHRDVKPHCVLLASKENSAPVKLGGFGVAIQ  182 (351)
T ss_dssp             EEEECCSSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECSSSTTCCEEECCCTTCEE
T ss_pred             EEEeCCCCCCHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHCCceeccCChHHeEEecCCCCCcEEEecCcceeE
Confidence                                            356889999999999999999999999998654   499999999987


Q ss_pred             cCCCCccccccccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCCc
Q 045449          723 LSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGETC  779 (823)
Q Consensus       723 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~~  779 (823)
                      ......  .....+||+.|+|||++.+..|+.++||||+||++|++++|..||.+..
T Consensus       183 ~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~  237 (351)
T 3c0i_A          183 LGESGL--VAGGRVGTPHFMAPEVVKREPYGKPVDVWGCGVILFILLSGCLPFYGTK  237 (351)
T ss_dssp             CCTTSC--BCCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCSSH
T ss_pred             ecCCCe--eecCCcCCcCccCHHHHcCCCCCchHhhHHHHHHHHHHHHCCCCCCCcH
Confidence            654322  2334679999999999999999999999999999999999999997653

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}

Probab=99.89  E-value=5.7e-25  Score=239.44  Aligned_cols=152  Identities=25%  Similarity=0.369  Sum_probs=119.6

Q ss_pred             ccCCccceeeccC-----------CeEEEEEEehHh--hHHHHHHHHHHHHHHhhcch--hhHHH---------------
Q 045449          628 DRFSENNLIGIGN-----------GMEVAVKVFHQQ--YERALKSFEDECEVRKRIRH--RNLVK---------------  677 (823)
Q Consensus       628 ~~f~~~~~lg~g~-----------~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h--~niv~---------------  677 (823)
                      ++|...+.||.|+           +..||||++...  .....+.|.+|++++.+++|  +||++               
T Consensus         9 ~~y~i~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~~~~~lv~   88 (343)
T 3dbq_A            9 RIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMVM   88 (343)
T ss_dssp             CEEEEEEEESCCSSEEEEEEECTTSCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEE
T ss_pred             CEEEEEEEEecCCCeEEEEEEeCCCCEEEEEEeeccccchHHHHHHHHHHHHHHhhhhcCCceEEEeeeEeeCCEEEEEE
Confidence            4677778888876           566999998643  34556789999999999977  89987               


Q ss_pred             ------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCcccccc
Q 045449          678 ------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQT  733 (823)
Q Consensus       678 ------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~  733 (823)
                                              ++.|++.+|+|+|+.+|+||||||+|||++ ++.+||+|||+++............
T Consensus        89 e~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~al~~lH~~~iiHrDikp~NIll~-~~~~kl~DFG~a~~~~~~~~~~~~~  167 (343)
T 3dbq_A           89 ECGNIDLNSWLKKKKSIDPWERKSYWKNMLEAVHTIHQHGIVHSDLKPANFLIV-DGMLKLIDFGIANQMQPDTTSVVKD  167 (343)
T ss_dssp             CCCSEEHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEEE-TTEEEECCCSSSCCC----------
T ss_pred             eCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCcceEEEE-CCcEEEeecccccccCcccccccCC
Confidence                                    467899999999999999999999999997 5789999999998765443332334


Q ss_pred             ccccCCCcCcccccCC-----------CccccccceehhhhhhccccCCCCCcCCCcc
Q 045449          734 QTLATIGYMAPEYGTK-----------GRVSTRGDVCSFGIISGGKETRSMTVGETCT  780 (823)
Q Consensus       734 ~~~gt~~y~aPE~~~~-----------~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~~~  780 (823)
                      ..+||+.|+|||++.+           ..++.++|||||||+++++++|..||.+...
T Consensus       168 ~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~  225 (343)
T 3dbq_A          168 SQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIIN  225 (343)
T ss_dssp             --CCCCSSCCHHHHHHCC-----------CCHHHHHHHHHHHHHHHHHSSCTTTTCCS
T ss_pred             CCcCCcCcCCHHHHhhccccccccccccCCCchhhHHHHHHHHHHHHhCCCcchhhhh
Confidence            5679999999999854           6789999999999999999999999977543

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*

Probab=99.89  E-value=1.6e-24  Score=233.65  Aligned_cols=151  Identities=25%  Similarity=0.287  Sum_probs=126.2

Q ss_pred             hccCCccceeeccC----------CeEEEEEEehHhhHHHHHHHHHHHHHHhhcchhhHHH-------------------
Q 045449          627 TDRFSENNLIGIGN----------GMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVK-------------------  677 (823)
Q Consensus       627 t~~f~~~~~lg~g~----------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~-------------------  677 (823)
                      .++|...+.||.|+          +..||||++..... ....+.+|+.++++++||||++                   
T Consensus        23 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~lv~  101 (322)
T 3soc_A           23 SMPLQLLEVKARGRFGCVWKAQLLNEYVAVKIFPIQDK-QSWQNEYEVYSLPGMKHENILQFIGAEKRGTSVDVDLWLIT  101 (322)
T ss_dssp             TEEEEEEEEEECSTTCEEEEEEETTEEEEEEEECGGGH-HHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEEE
T ss_pred             hhhchhhheecccCceEEEEEEECCCEEEEEEeecCch-HHHHHHHHHHHHhcCCCCCchhhcceeccCCCCCceEEEEE
Confidence            36788888999886          56799999976543 3356677999999999999998                   


Q ss_pred             ------------------------HHHHHHHHhhhcCCC----------CEEeccCCCCCEEeCCCCcEEEeeccccccc
Q 045449          678 ------------------------IISSSLEYLHFGHSI----------PIIHCDLKPSNVLLDEDMVAHISDFGIAKLL  723 (823)
Q Consensus       678 ------------------------~~~~~l~~L~~~h~~----------~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~  723 (823)
                                              ++.|++.+|+|+|+.          +|+||||||+||+++.++.+||+|||+|+..
T Consensus       102 e~~~~g~L~~~l~~~~~~~~~~~~i~~qi~~al~~LH~~~~~l~~~~~~~ivH~Dlkp~Nill~~~~~~kL~DFg~a~~~  181 (322)
T 3soc_A          102 AFHEKGSLSDFLKANVVSWNELCHIAETMARGLAYLHEDIPGLKDGHKPAISHRDIKSKNVLLKNNLTACIADFGLALKF  181 (322)
T ss_dssp             ECCTTCBHHHHHHHCCBCHHHHHHHHHHHHHHHHHHTCCEEEETTEEECEEECSCCSGGGEEECTTCCEEECCCTTCEEE
T ss_pred             ecCCCCCHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhccccccccCCCEEeCCCChHhEEECCCCeEEEccCCccccc
Confidence                                    356788888889988          9999999999999999999999999999877


Q ss_pred             CCCCccccccccccCCCcCcccccCC-----CccccccceehhhhhhccccCCCCCcCCC
Q 045449          724 SGEDQLSKQTQTLATIGYMAPEYGTK-----GRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       724 ~~~~~~~~~~~~~gt~~y~aPE~~~~-----~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      .............||+.|+|||++.+     ..++.++|||||||++|++++|..||.+.
T Consensus       182 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~il~el~tg~~pf~~~  241 (322)
T 3soc_A          182 EAGKSAGDTHGQVGTRRYMAPEVLEGAINFQRDAFLRIDMYAMGLVLWELASRCTAADGP  241 (322)
T ss_dssp             CTTSCCCCCTTCCCCGGGCCHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHTTBTTSSSC
T ss_pred             ccccCccccccCccCccccCHhhcccccccCcCCCccchhHHHHHHHHHHHhCCCCCCCC
Confidence            65444333445679999999999876     45778899999999999999999998764

>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*

Probab=99.89  E-value=7.1e-25  Score=238.90  Aligned_cols=150  Identities=23%  Similarity=0.178  Sum_probs=127.8

Q ss_pred             hccCCccceeeccC------------CeEEEEEEehHhhH---HHHHHHHHHHHHHhhc-chhhHHH-------------
Q 045449          627 TDRFSENNLIGIGN------------GMEVAVKVFHQQYE---RALKSFEDECEVRKRI-RHRNLVK-------------  677 (823)
Q Consensus       627 t~~f~~~~~lg~g~------------~~~vavK~~~~~~~---~~~~~~~~E~~~l~~l-~h~niv~-------------  677 (823)
                      .++|...+.||+|+            ++.||||++.....   ...+.+..|.+++.++ +||+|++             
T Consensus        19 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~~~l   98 (353)
T 2i0e_A           19 LTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLYF   98 (353)
T ss_dssp             CTTEEEEEEEEEETTEEEEEEEETTEEEEEEEEEEEHHHHHHTTCHHHHHHHHHHHTCTTCCTTBCCEEEEEECSSEEEE
T ss_pred             hHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhcchHHHHHHHHHHHHHhcCCCCEEeeEEEEEEcCCEEEE
Confidence            46788889999986            45699999976532   2346788999999988 8999997             


Q ss_pred             ---------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccc
Q 045449          678 ---------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLS  730 (823)
Q Consensus       678 ---------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~  730 (823)
                                                 +++|++.+|+|+|+.||+||||||+|||++.++++||+|||+|+.......  
T Consensus        99 v~E~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~givHrDlkp~NIll~~~g~vkL~DFG~a~~~~~~~~--  176 (353)
T 2i0e_A           99 VMEYVNGGDLMYHIQQVGRFKEPHAVFYAAEIAIGLFFLQSKGIIYRDLKLDNVMLDSEGHIKIADFGMCKENIWDGV--  176 (353)
T ss_dssp             EEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTSCEEECCCTTCBCCCCTTC--
T ss_pred             EEeCCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCEEeccCCHHHEEEcCCCcEEEEeCCcccccccCCc--
Confidence                                       467899999999999999999999999999999999999999986432221  


Q ss_pred             cccccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCC
Q 045449          731 KQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       731 ~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      .....+||+.|+|||++.+..++.++||||+||++|+|++|..||.+.
T Consensus       177 ~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~  224 (353)
T 2i0e_A          177 TTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGE  224 (353)
T ss_dssp             CBCCCCSCGGGCCHHHHTTCCBSTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             ccccccCCccccChhhhcCCCcCCcccccchHHHHHHHHcCCCCCCCC
Confidence            234568999999999999999999999999999999999999999764

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A

Probab=99.89  E-value=2.3e-24  Score=229.08  Aligned_cols=147  Identities=25%  Similarity=0.311  Sum_probs=123.5

Q ss_pred             ccCCccceeeccC------------CeEEEEEEehHhh--HHHHHHHHHHHHHHhhcchhhHHH----------------
Q 045449          628 DRFSENNLIGIGN------------GMEVAVKVFHQQY--ERALKSFEDECEVRKRIRHRNLVK----------------  677 (823)
Q Consensus       628 ~~f~~~~~lg~g~------------~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~----------------  677 (823)
                      ++|...+.||.|+            ++.||||++....  ....+.+.+|++++++++||||++                
T Consensus         2 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e   81 (292)
T 3o0g_A            2 QKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLVFE   81 (292)
T ss_dssp             CSEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEESSCSSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             CCceeeeEecCCCCeEEEEEEECCCCceEEEEeeeccCCcCCcchHHHHHHHHHhcCCCCCEeeEEeEEEeCCEEEEEEe
Confidence            4677778888875            5679999986432  334467889999999999999998                


Q ss_pred             ------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCcccccc
Q 045449          678 ------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQT  733 (823)
Q Consensus       678 ------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~  733 (823)
                                              ++.|++.+|+|+|+.+|+||||||+||+++.++.+||+|||+++......  ....
T Consensus        82 ~~~~~l~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lH~~~ivH~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~--~~~~  159 (292)
T 3o0g_A           82 FCDQDLKKYFDSCNGDLDPEIVKSFLFQLLKGLGFCHSRNVLHRDLKPQNLLINRNGELKLANFGLARAFGIPV--RCYS  159 (292)
T ss_dssp             CCSEEHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEECCSCC--SCCC
T ss_pred             cCCCCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCCEEEeecccceecCCcc--cccc
Confidence                                    36789999999999999999999999999999999999999998764322  2234


Q ss_pred             ccccCCCcCcccccCCCc-cccccceehhhhhhccccCCCCCcC
Q 045449          734 QTLATIGYMAPEYGTKGR-VSTRGDVCSFGIISGGKETRSMTVG  776 (823)
Q Consensus       734 ~~~gt~~y~aPE~~~~~~-~~~~~Dv~S~Gvv~~~~~~~~~~~~  776 (823)
                      ...||+.|+|||++.+.. ++.++||||+||++++++++..|+.
T Consensus       160 ~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~~~~p~~  203 (292)
T 3o0g_A          160 AEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLF  203 (292)
T ss_dssp             SCCSCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHTTTSCCSC
T ss_pred             CCccccCCcChHHHcCCCCcCchHHHHHHHHHHHHHHHcCCCCc
Confidence            467899999999987766 7999999999999999999888853

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B

Probab=99.89  E-value=1.4e-24  Score=248.02  Aligned_cols=149  Identities=26%  Similarity=0.291  Sum_probs=128.5

Q ss_pred             ccCCccceeeccC------------CeEEEEEEehHhhH---HHHHHHHHHHHHHhhcchhhHHH---------------
Q 045449          628 DRFSENNLIGIGN------------GMEVAVKVFHQQYE---RALKSFEDECEVRKRIRHRNLVK---------------  677 (823)
Q Consensus       628 ~~f~~~~~lg~g~------------~~~vavK~~~~~~~---~~~~~~~~E~~~l~~l~h~niv~---------------  677 (823)
                      ++|...+.||+|+            |+.||||++.....   ...+.+.+|++++++++||||++               
T Consensus       185 ~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~~l~lVm  264 (543)
T 3c4z_A          185 DWFLDFRVLGRGGFGEVFACQMKATGKLYACKKLNKKRLKKRKGYQGAMVEKKILAKVHSRFIVSLAYAFETKTDLCLVM  264 (543)
T ss_dssp             GGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             hheEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEEhHHhhhhHHHHHHHHHHHHHHhcCCCCEeeEEEEEeeCCEEEEEE
Confidence            5677778899886            67799999976542   23467899999999999999998               


Q ss_pred             -----------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCc
Q 045449          678 -----------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQ  728 (823)
Q Consensus       678 -----------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~  728 (823)
                                                   +++|++.+|+|+|+.+|+||||||+|||++.++.+||+|||+++.......
T Consensus       265 E~~~gg~L~~~l~~~~~~~~~l~e~~~~~~~~qi~~aL~~LH~~gIvHrDLKP~NILl~~~g~vkL~DFGla~~~~~~~~  344 (543)
T 3c4z_A          265 TIMNGGDIRYHIYNVDEDNPGFQEPRAIFYTAQIVSGLEHLHQRNIIYRDLKPENVLLDDDGNVRISDLGLAVELKAGQT  344 (543)
T ss_dssp             CCCTTCBHHHHHHTSSTTSCSCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTSCEEECCCTTCEECCTTCC
T ss_pred             EeccCCCHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHHcCCcccCCChHHEEEeCCCCEEEeecceeeeccCCCc
Confidence                                         367899999999999999999999999999999999999999987654322


Q ss_pred             cccccccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCC
Q 045449          729 LSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       729 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                        .....+||+.|+|||++.+..|+.++||||+||++|+|++|..||...
T Consensus       345 --~~~~~~GT~~Y~APE~l~~~~~~~~~DiwSlGvilyelltG~~PF~~~  392 (543)
T 3c4z_A          345 --KTKGYAGTPGFMAPELLLGEEYDFSVDYFALGVTLYEMIAARGPFRAR  392 (543)
T ss_dssp             --CBCCCCSCTTTSCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCT
T ss_pred             --ccccccCCccccChhhhcCCCCChHHhcCcchHHHHHHHhCCCCCCCC
Confidence              223458999999999999999999999999999999999999999764

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*

Probab=99.89  E-value=2.4e-24  Score=231.13  Aligned_cols=150  Identities=26%  Similarity=0.332  Sum_probs=124.2

Q ss_pred             hccCCccceeeccC-----------CeEEEEEEehHhh--HHHHHHHHHHHHHHhhcchhhHHH----------------
Q 045449          627 TDRFSENNLIGIGN-----------GMEVAVKVFHQQY--ERALKSFEDECEVRKRIRHRNLVK----------------  677 (823)
Q Consensus       627 t~~f~~~~~lg~g~-----------~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~----------------  677 (823)
                      .++|...+.||.|+           +..||||++....  ....+.+.+|++++++++||||++                
T Consensus        20 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e   99 (311)
T 3niz_A           20 MEKYQKLEKVGEGTYGVVYKAKDSQGRIVALKRIRLDAEDEGIPSTAIREISLLKELHHPNIVSLIDVIHSERCLTLVFE   99 (311)
T ss_dssp             SCEEEEEEEEEECSSCEEEEEEETTSCEEEEEEEC------CHHHHHHHHHHHHHHCCCTTBCCEEEEECCSSCEEEEEE
T ss_pred             HhhhHhhhhccCCCCeEEEEEEECCCCEEEEEEEecccccchhhHHHHHHHHHHHHcCCCCEeeeeeEEccCCEEEEEEc
Confidence            46788888899886           5679999987543  223467899999999999999998                


Q ss_pred             ------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCcccccc
Q 045449          678 ------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQT  733 (823)
Q Consensus       678 ------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~  733 (823)
                                              ++.|++.+|+|+|+.+|+||||||+||+++.++.+||+|||+++.......  ...
T Consensus       100 ~~~~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~~~~--~~~  177 (311)
T 3niz_A          100 FMEKDLKKVLDENKTGLQDSQIKIYLYQLLRGVAHCHQHRILHRDLKPQNLLINSDGALKLADFGLARAFGIPVR--SYT  177 (311)
T ss_dssp             CCSEEHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTCEETTSCCC-----
T ss_pred             CCCCCHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCchHhEEECCCCCEEEccCcCceecCCCcc--ccc
Confidence                                    367899999999999999999999999999999999999999987643222  234


Q ss_pred             ccccCCCcCcccccCC-CccccccceehhhhhhccccCCCCCcCCC
Q 045449          734 QTLATIGYMAPEYGTK-GRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       734 ~~~gt~~y~aPE~~~~-~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      ...||+.|+|||++.+ ..++.++||||+||+++++++|..||.+.
T Consensus       178 ~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~  223 (311)
T 3niz_A          178 HEVVTLWYRAPDVLMGSKKYSTSVDIWSIGCIFAEMITGKPLFPGV  223 (311)
T ss_dssp             CCCCCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred             CCcccCCcCCHHHhcCCCCCCchHHhHHHHHHHHHHHhCCCCCCCC
Confidence            4578999999999876 56899999999999999999999999764

>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}

Probab=99.89  E-value=7.9e-25  Score=240.03  Aligned_cols=161  Identities=27%  Similarity=0.346  Sum_probs=136.7

Q ss_pred             cccccccCHHHHHHHhccCCccceeeccC------------CeEEEEEEehHhhHHHHHHHHHHHHHHhhcc-----hhh
Q 045449          612 PQAIRRFSYHELLRATDRFSENNLIGIGN------------GMEVAVKVFHQQYERALKSFEDECEVRKRIR-----HRN  674 (823)
Q Consensus       612 ~~~~~~~~~~~l~~at~~f~~~~~lg~g~------------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-----h~n  674 (823)
                      ......+++.+.....++|...+.||.|+            +..||||++... ....+.+..|+++++++.     |||
T Consensus        19 ~~~~~~~~~~~g~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~-~~~~~~~~~e~~~l~~l~~~~~~h~~   97 (360)
T 3llt_A           19 DDEIVHFSWKKGMLLNNAFLVIRKMGDGTFGRVLLCQHIDNKKYYAVKVVRNI-KKYTRSAKIEADILKKIQNDDINNNN   97 (360)
T ss_dssp             -CGGGSCCCCTTCEETTTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECSC-HHHHHHHHHHHHHHHHTCCCSTTGGG
T ss_pred             CccceeeeeecceEecCEEEEEEEEcccCCeEEEEEEECCCCeEEEEEEeccc-hhhhhhhHHHHHHHHHhcccCCCCCC
Confidence            34566777777777889999999999986            567999999743 334467888999999996     999


Q ss_pred             HHH-----------------------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCC-----
Q 045449          675 LVK-----------------------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDE-----  708 (823)
Q Consensus       675 iv~-----------------------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~-----  708 (823)
                      |++                                         ++.|++.+|+|+|+.+|+||||||+|||++.     
T Consensus        98 iv~~~~~~~~~~~~~lv~e~~~~~L~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~~~~~  177 (360)
T 3llt_A           98 IVKYHGKFMYYDHMCLIFEPLGPSLYEIITRNNYNGFHIEDIKLYCIEILKALNYLRKMSLTHTDLKPENILLDDPYFEK  177 (360)
T ss_dssp             BCCEEEEEEETTEEEEEECCCCCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEESCTTCCE
T ss_pred             eecccceeeECCeeEEEEcCCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHCCeeeCCCCcccEEEccccccc
Confidence            998                                         3678999999999999999999999999975     


Q ss_pred             --------------------CCcEEEeecccccccCCCCccccccccccCCCcCcccccCCCccccccceehhhhhhccc
Q 045449          709 --------------------DMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGK  768 (823)
Q Consensus       709 --------------------~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~  768 (823)
                                          ++.+||+|||+|+.....     .....||+.|+|||++.+..++.++||||+||++|++
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~kl~DFG~a~~~~~~-----~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el  252 (360)
T 3llt_A          178 SLITVRRVTDGKKIQIYRTKSTGIKLIDFGCATFKSDY-----HGSIINTRQYRAPEVILNLGWDVSSDMWSFGCVLAEL  252 (360)
T ss_dssp             EEEEEECTTTCCEEEEEEESCCCEEECCCTTCEETTSC-----CCSCCSCGGGCCHHHHTTCCCCTTHHHHHHHHHHHHH
T ss_pred             cccchhcccccccccccccCCCCEEEEeccCceecCCC-----CcCccCcccccCcHHHcCCCCCCccchHHHHHHHHHH
Confidence                                789999999999865432     2345799999999999999999999999999999999


Q ss_pred             cCCCCCcCCC
Q 045449          769 ETRSMTVGET  778 (823)
Q Consensus       769 ~~~~~~~~~~  778 (823)
                      ++|..||...
T Consensus       253 l~g~~pf~~~  262 (360)
T 3llt_A          253 YTGSLLFRTH  262 (360)
T ss_dssp             HHSSCSCCCS
T ss_pred             HHCCCCCCCC
Confidence            9999999654

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.89  E-value=1.2e-22  Score=210.74  Aligned_cols=182  Identities=21%  Similarity=0.245  Sum_probs=153.2

Q ss_pred             CceEEEeecCCCCccCCccccccccccceEEecCCcceeccCccccCcccccEEEcccCcCCCCchhcccccCCCCEEEc
Q 045449          331 KLKVLIVTGNPLDGILPKSIGNFSLSLETILMANCSISGNIPQVVGNLSNLLVLELGGNNLTGPIPVTFSQLQTLQAFDL  410 (823)
Q Consensus       331 ~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L  410 (823)
                      ..+.++++++.++. +|..+.   .++++|+|++|++++..+..|.++++|++|+|++|++++..|..|..+++|++|+|
T Consensus        15 ~~~~l~~~~~~l~~-~p~~~~---~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L   90 (251)
T 3m19_A           15 GKKEVDCQGKSLDS-VPSGIP---ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL   90 (251)
T ss_dssp             GGTEEECTTCCCSS-CCSCCC---TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCeEEecCCCCccc-cCCCCC---CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence            45667777777773 455443   57888888888888888888888899999999999998888888888899999999


Q ss_pred             cCCCCCCcchHhhhcCCCCCEEEcccCcCcccccccccCCCCCCeEeccCCccccccchhhhccCCCcEEeccccccccc
Q 045449          411 TRNKLAGPITDELCHLARLHSLVLQGNKFSGSIPSCLGNLTSVRVLYLGLNIFTSVLSSTIWNLKDILFIDVSSNFLDGP  490 (823)
Q Consensus       411 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~  490 (823)
                      ++|++++..+..|..+++|++|+|++|+|++..+..|..+++|+.|+|++|++++..+..+..+++|+.|||++|++++.
T Consensus        91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  170 (251)
T 3m19_A           91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV  170 (251)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred             CCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCcc
Confidence            99999888778888889999999999999877777788889999999999999988777888899999999999999988


Q ss_pred             cCccccCCCCCcEEEcccCCCCCCCC
Q 045449          491 LSLDIGNLKVVIGLDFSRNNLSGDIP  516 (823)
Q Consensus       491 ~p~~~~~l~~L~~L~ls~N~l~g~ip  516 (823)
                      .+..+..++.|+.|++++|++++..+
T Consensus       171 ~~~~~~~l~~L~~L~l~~N~~~c~~~  196 (251)
T 3m19_A          171 PHGAFDRLGKLQTITLFGNQFDCSRC  196 (251)
T ss_dssp             CTTTTTTCTTCCEEECCSCCBCTTST
T ss_pred             CHHHHhCCCCCCEEEeeCCceeCCcc
Confidence            78788889999999999999987633

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}

Probab=99.89  E-value=1.2e-24  Score=235.03  Aligned_cols=152  Identities=24%  Similarity=0.392  Sum_probs=123.3

Q ss_pred             ccCCccceeeccC---------------CeEEEEEEehHh-hHHHHHHHHHHHHHHhhcchhhHHH--------------
Q 045449          628 DRFSENNLIGIGN---------------GMEVAVKVFHQQ-YERALKSFEDECEVRKRIRHRNLVK--------------  677 (823)
Q Consensus       628 ~~f~~~~~lg~g~---------------~~~vavK~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~--------------  677 (823)
                      ++|...+.||.|+               +..||||++... .....+.|.+|++++++++||||++              
T Consensus        49 ~~y~i~~~lG~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv  128 (325)
T 3kul_A           49 SRIHIEKIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYTERQRRDFLSEASIMGQFDHPNIIRLEGVVTRGRLAMIV  128 (325)
T ss_dssp             GGEEEEEEEEETTTEEEEEEEECCTTSCCEEEEEEEECTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECGGGCCEEE
T ss_pred             hHeEEeeEEEeCCCcEEEEEEEecCCCCCceEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCccEEE
Confidence            4566678899886               234999999754 3455678999999999999999998              


Q ss_pred             ---------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCcc-
Q 045449          678 ---------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQL-  729 (823)
Q Consensus       678 ---------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~-  729 (823)
                                                 ++.|++.+|+|+|+.+|+||||||+||+++.++.+||+|||+++........ 
T Consensus       129 ~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~  208 (325)
T 3kul_A          129 TEYMENGSLDTFLRTHDGQFTIMQLVGMLRGVGAGMRYLSDLGYVHRDLAARNVLVDSNLVCKVSDFGLSRVLEDDPDAA  208 (325)
T ss_dssp             EECCTTCBHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCCSSCEECC----CC
T ss_pred             eeCCCCCcHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHCCeeCCCCCcceEEECCCCCEEECCCCcccccccCccce
Confidence                                       3578889999999999999999999999999999999999999876543221 


Q ss_pred             ccccccccCCCcCcccccCCCccccccceehhhhhhccccC-CCCCcCCCc
Q 045449          730 SKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKET-RSMTVGETC  779 (823)
Q Consensus       730 ~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~-~~~~~~~~~  779 (823)
                      .......+|+.|+|||++.+..++.++|||||||++|++++ |..||.+..
T Consensus       209 ~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~  259 (325)
T 3kul_A          209 YTTTGGKIPIRWTAPEAIAFRTFSSASDVWSFGVVMWEVLAYGERPYWNMT  259 (325)
T ss_dssp             EECC---CCGGGSCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTSC
T ss_pred             eeccCCCCcccccCHhHhcCCCCCcHHHHHHHHHHHHHHHcCCCCCcccCC
Confidence            12233456788999999988899999999999999999998 999986653

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.89  E-value=4.2e-23  Score=212.45  Aligned_cols=86  Identities=19%  Similarity=0.207  Sum_probs=46.8

Q ss_pred             CCccEEEeeccccccccCccccCCCCCCeEEeeccc-ccccCCCccCCCcccCcccccC-ccccCCCCcccccccccCCC
Q 045449          253 PNVETLNLGINSFSGTIPSSITNSSKLSDLELGENL-FSGFIPNTIGNLRNLEFGNIAD-NYLTSSTPELSFLSSLTNCK  330 (823)
Q Consensus       253 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~~~l~~l~  330 (823)
                      ++|++|+|++|++++..+..|.++++|++|++++|+ ++++.+..|..+++|++|++++ |.++...     +..|.+++
T Consensus        31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~-----~~~f~~l~  105 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYID-----PDALKELP  105 (239)
T ss_dssp             TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEEC-----TTSEECCT
T ss_pred             CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcC-----HHHhCCCC
Confidence            366666666666665555566666666666666665 6555555555555555555554 5544431     12344444


Q ss_pred             CceEEEeecCCCC
Q 045449          331 KLKVLIVTGNPLD  343 (823)
Q Consensus       331 ~L~~L~Ls~N~l~  343 (823)
                      +|+.|++++|.++
T Consensus       106 ~L~~L~l~~n~l~  118 (239)
T 2xwt_C          106 LLKFLGIFNTGLK  118 (239)
T ss_dssp             TCCEEEEEEECCC
T ss_pred             CCCEEeCCCCCCc
Confidence            4444444444444

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.89  E-value=4.9e-23  Score=211.97  Aligned_cols=87  Identities=22%  Similarity=0.329  Sum_probs=56.0

Q ss_pred             CCcEEEccCCcccccCCcccccCCCCccEEEeeccc-cccccCccccCCCCCCeEEeec-ccccccCCCccCCCcccCcc
Q 045449          229 ALKEISLLNNSLSGSLPSRIDLSLPNVETLNLGINS-FSGTIPSSITNSSKLSDLELGE-NLFSGFIPNTIGNLRNLEFG  306 (823)
Q Consensus       229 ~L~~L~Ls~N~l~g~lp~~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L  306 (823)
                      +|++|++++|+++ .+|...+..+++|++|++++|+ +++..+..|.++++|++|++++ |++++..+..|..+++|++|
T Consensus        32 ~l~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L  110 (239)
T 2xwt_C           32 STQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL  110 (239)
T ss_dssp             TCCEEEEESCCCS-EECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred             cccEEEEeCCcce-EECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence            6667777777766 3444333346667777777775 6655555666666777777776 66666666666666777777


Q ss_pred             cccCccccCC
Q 045449          307 NIADNYLTSS  316 (823)
Q Consensus       307 ~L~~N~l~~~  316 (823)
                      ++++|.+++.
T Consensus       111 ~l~~n~l~~l  120 (239)
T 2xwt_C          111 GIFNTGLKMF  120 (239)
T ss_dssp             EEEEECCCSC
T ss_pred             eCCCCCCccc
Confidence            7777766653

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*

Probab=99.89  E-value=1.2e-24  Score=237.04  Aligned_cols=145  Identities=28%  Similarity=0.379  Sum_probs=123.6

Q ss_pred             ccCCccceeeccC------------CeEEEEEEehHh---hHHHHHHHHHHHHHHhhcchhhHHH---------------
Q 045449          628 DRFSENNLIGIGN------------GMEVAVKVFHQQ---YERALKSFEDECEVRKRIRHRNLVK---------------  677 (823)
Q Consensus       628 ~~f~~~~~lg~g~------------~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~---------------  677 (823)
                      ++|...+.||.|+            +..||||++...   .....++|.+|++++++++||||++               
T Consensus        54 ~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~  133 (348)
T 1u5q_A           54 KLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLVM  133 (348)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEESCSSCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred             hheeeeeEEccCCCEEEEEEEEccCCeEEEEEEEccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCeEEEEE
Confidence            4577778888876            667999998632   2445578999999999999999998               


Q ss_pred             -------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccc
Q 045449          678 -------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQ  732 (823)
Q Consensus       678 -------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~  732 (823)
                                               ++.|++.+|+|+|+.+|+||||||+||+++.++.+||+|||+++.....      
T Consensus       134 e~~~g~l~~~l~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~------  207 (348)
T 1u5q_A          134 EYCLGSASDLLEVHKKPLQEVEIAAVTHGALQGLAYLHSHNMIHRDVKAGNILLSEPGLVKLGDFGSASIMAPA------  207 (348)
T ss_dssp             ECCSEEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCSGGGEEEETTTEEEECCCTTCBSSSSB------
T ss_pred             ecCCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeeeCCCCHHHEEECCCCCEEEeeccCceecCCC------
Confidence                                     3568899999999999999999999999999999999999999875422      


Q ss_pred             cccccCCCcCcccccC---CCccccccceehhhhhhccccCCCCCcCCC
Q 045449          733 TQTLATIGYMAPEYGT---KGRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       733 ~~~~gt~~y~aPE~~~---~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      ....||+.|+|||++.   .+.++.++|||||||+++++++|..||...
T Consensus       208 ~~~~gt~~y~aPE~~~~~~~~~~~~~~DiwslG~il~ell~g~~p~~~~  256 (348)
T 1u5q_A          208 NSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNM  256 (348)
T ss_dssp             CCCCSCGGGCCHHHHHTTSSCCBCTHHHHHHHHHHHHHHHHSSCTTTTS
T ss_pred             CcccCCcceeCHhhhccccCCCCCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence            2357999999999874   567899999999999999999999998654

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*

Probab=99.89  E-value=5.7e-25  Score=242.61  Aligned_cols=153  Identities=26%  Similarity=0.321  Sum_probs=126.2

Q ss_pred             hccCCccceeeccC------------CeEEEEEEehHhh-HHHHHHHHHHHHHHhhcchhhHHH----------------
Q 045449          627 TDRFSENNLIGIGN------------GMEVAVKVFHQQY-ERALKSFEDECEVRKRIRHRNLVK----------------  677 (823)
Q Consensus       627 t~~f~~~~~lg~g~------------~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~----------------  677 (823)
                      .++|...+.||.|+            +..||||+++... ....++|.+|++++++++||||++                
T Consensus       113 ~~~~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e  192 (377)
T 3cbl_A          113 HEDLVLGEQIGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQPIYIVME  192 (377)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEECCTTSCHHHHTTTTHHHHHHTTCCCTTBCCEEEEECSSSSCEEEEE
T ss_pred             hHHeEEeeEeccCCCCeEEEEEEecCCeEEEEEEccccCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEecCCCcEEEEE
Confidence            35677778888885            5679999987543 344568999999999999999998                


Q ss_pred             -------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccc
Q 045449          678 -------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQ  732 (823)
Q Consensus       678 -------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~  732 (823)
                                               ++.|++++|+|+|+.+|+||||||+|||++.++.+||+|||+++...........
T Consensus       193 ~~~~g~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~ivHrDlkp~Nil~~~~~~~kl~DfG~s~~~~~~~~~~~~  272 (377)
T 3cbl_A          193 LVQGGDFLTFLRTEGARLRVKTLLQMVGDAAAGMEYLESKCCIHRDLAARNCLVTEKNVLKISDFGMSREEADGVYAASG  272 (377)
T ss_dssp             CCTTCBHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCGGGCEECTTSEEECCS
T ss_pred             cCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCcCCcccCHHHEEEcCCCcEEECcCCCceecCCCceeecC
Confidence                                     3578889999999999999999999999999999999999999875433221111


Q ss_pred             cccccCCCcCcccccCCCccccccceehhhhhhccccC-CCCCcCCCc
Q 045449          733 TQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKET-RSMTVGETC  779 (823)
Q Consensus       733 ~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~-~~~~~~~~~  779 (823)
                      ....+++.|+|||++.++.++.++|||||||++|++++ |..||....
T Consensus       273 ~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~el~t~g~~p~~~~~  320 (377)
T 3cbl_A          273 GLRQVPVKWTAPEALNYGRYSSESDVWSFGILLWETFSLGASPYPNLS  320 (377)
T ss_dssp             SCCEEEGGGSCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCSSTTSC
T ss_pred             CCCCCCcCcCCHhHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCC
Confidence            22345778999999988899999999999999999998 899987654

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*

Probab=99.89  E-value=1.2e-24  Score=240.83  Aligned_cols=151  Identities=25%  Similarity=0.363  Sum_probs=121.2

Q ss_pred             ccCCccceeeccC-----------CeEEEEEEehHh--hHHHHHHHHHHHHHHhhcc--hhhHHH---------------
Q 045449          628 DRFSENNLIGIGN-----------GMEVAVKVFHQQ--YERALKSFEDECEVRKRIR--HRNLVK---------------  677 (823)
Q Consensus       628 ~~f~~~~~lg~g~-----------~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~--h~niv~---------------  677 (823)
                      ++|...+.||.|+           +..||||++...  .....+.|.+|++++.+++  ||||++               
T Consensus        56 ~~y~~~~~LG~G~fg~Vy~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l~~l~~~~~~iv~~~~~~~~~~~~~lv~  135 (390)
T 2zmd_A           56 RIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMVM  135 (390)
T ss_dssp             EEEEEEEEEECCSSEEEEEEECTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEE
T ss_pred             CceEEEEEEccCCCeEEEEEEcCCCCEEEEEEEecccccHHHHHHHHHHHHHHHHcccCCCeEEEEEEEEecCCEEEEEE
Confidence            4588888999886           566999998643  2455678999999999996  499987               


Q ss_pred             ------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCcccccc
Q 045449          678 ------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQT  733 (823)
Q Consensus       678 ------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~  733 (823)
                                              ++.|++.+|+|+|+.+|+||||||+|||++ ++.+||+|||+++............
T Consensus       136 E~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~aL~~lH~~~ivHrDlkp~NIll~-~~~~kl~DFG~a~~~~~~~~~~~~~  214 (390)
T 2zmd_A          136 ECGNIDLNSWLKKKKSIDPWERKSYWKNMLEAVHTIHQHGIVHSDLKPANFLIV-DGMLKLIDFGIANQMQPDTTSVVKD  214 (390)
T ss_dssp             ECCSEEHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHHTTTCCCCCCCGGGEEES-SSCEEECCCSSSCCC---------C
T ss_pred             ecCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeeecCCCHHHEEEE-CCeEEEEecCccccccCCCccccCC
Confidence                                    367899999999999999999999999996 5789999999998765433322334


Q ss_pred             ccccCCCcCcccccCC-----------CccccccceehhhhhhccccCCCCCcCCCc
Q 045449          734 QTLATIGYMAPEYGTK-----------GRVSTRGDVCSFGIISGGKETRSMTVGETC  779 (823)
Q Consensus       734 ~~~gt~~y~aPE~~~~-----------~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~~  779 (823)
                      ..+||+.|+|||++.+           ..|+.++|||||||++|++++|..||.+..
T Consensus       215 ~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwSlGvil~ell~G~~Pf~~~~  271 (390)
T 2zmd_A          215 SQVGAVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQII  271 (390)
T ss_dssp             CSCCCGGGCCHHHHHCC------------CCHHHHHHHHHHHHHHHHHSSCTTTTCC
T ss_pred             CCCcCCCccChHHhhhccccccccccccCCCChhhHHHHHHHHHHHHHCCCcchhhh
Confidence            5679999999999864           468999999999999999999999997653

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*

Probab=99.89  E-value=1.7e-24  Score=236.75  Aligned_cols=149  Identities=23%  Similarity=0.373  Sum_probs=127.1

Q ss_pred             hccCCccceeeccC------------CeEEEEEEehHhhHH------HHHHHHHHHHHHhhcchhhHHH-----------
Q 045449          627 TDRFSENNLIGIGN------------GMEVAVKVFHQQYER------ALKSFEDECEVRKRIRHRNLVK-----------  677 (823)
Q Consensus       627 t~~f~~~~~lg~g~------------~~~vavK~~~~~~~~------~~~~~~~E~~~l~~l~h~niv~-----------  677 (823)
                      .++|...+.||.|+            |..||||++......      ..+.+.+|++++++++||||++           
T Consensus        11 ~~~y~~~~~LG~G~fg~V~~~~~~~~~~~~avK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~   90 (361)
T 2yab_A           11 EDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVCREEIEREVSILRQVLHPNIITLHDVYENRTDV   90 (361)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEE
T ss_pred             hhceEEeeEEeeCcCEEEEEEEECCCCCEEEEEEEEccccccccchhHHHHHHHHHHHHHhCCCcCCCcEEEEEEeCCEE
Confidence            46788888999886            667999998654311      2467999999999999999998           


Q ss_pred             -----------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCC----cEEEeecccccccC
Q 045449          678 -----------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDM----VAHISDFGIAKLLS  724 (823)
Q Consensus       678 -----------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~----~~kl~DfGla~~~~  724 (823)
                                                   ++.|++.+|+|+|+.||+||||||+||+++.++    .+||+|||+++...
T Consensus        91 ~lv~e~~~gg~L~~~l~~~~~l~~~~~~~i~~qi~~aL~~LH~~givHrDlkp~NIll~~~~~~~~~vkl~DFG~a~~~~  170 (361)
T 2yab_A           91 VLILELVSGGELFDFLAQKESLSEEEATSFIKQILDGVNYLHTKKIAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHEIE  170 (361)
T ss_dssp             EEEEECCCSCBHHHHHTTCSCCBHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEESCTTSSSCCEEECCCSSCEECC
T ss_pred             EEEEEcCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEEeCCCCCccCEEEEecCCceEcC
Confidence                                         467899999999999999999999999998776    79999999998765


Q ss_pred             CCCccccccccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCC
Q 045449          725 GEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       725 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      ....   ....+||+.|+|||++.+..|+.++||||+||++|++++|..||.+.
T Consensus       171 ~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~~ll~g~~Pf~~~  221 (361)
T 2yab_A          171 DGVE---FKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGD  221 (361)
T ss_dssp             TTCC---CCCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCS
T ss_pred             CCCc---cccCCCCccEECchHHcCCCCCccccHHHHHHHHHHHHhCCCCCCCC
Confidence            4322   34467999999999999889999999999999999999999999654

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*

Probab=99.89  E-value=2e-24  Score=247.31  Aligned_cols=149  Identities=23%  Similarity=0.291  Sum_probs=128.5

Q ss_pred             hccCCccceeeccC------------CeEEEEEEehHhhH---HHHHHHHHHHHHHhhcchhhHHH--------------
Q 045449          627 TDRFSENNLIGIGN------------GMEVAVKVFHQQYE---RALKSFEDECEVRKRIRHRNLVK--------------  677 (823)
Q Consensus       627 t~~f~~~~~lg~g~------------~~~vavK~~~~~~~---~~~~~~~~E~~~l~~l~h~niv~--------------  677 (823)
                      .++|...+.||+|+            |..||||++.....   ...+.+.+|++++++++|||||+              
T Consensus       183 ~~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAvK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~~l~lV  262 (576)
T 2acx_A          183 KNTFRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVSLAYAYETKDALCLV  262 (576)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred             ccceEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhHhhhhhHHHHHHHHHHHHHHHcCCCCEeeEEEEEeeCCEEEEE
Confidence            35688888899886            66799999975432   23457889999999999999998              


Q ss_pred             ----------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCcc
Q 045449          678 ----------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQL  729 (823)
Q Consensus       678 ----------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~  729 (823)
                                                  +++|++.+|+|+|+.+|+||||||+|||++.++.+||+|||+|+....... 
T Consensus       263 mEy~~gg~L~~~l~~~~~~~l~e~~~~~i~~qIl~aL~yLH~~gIvHrDLKPeNILld~~g~vKL~DFGla~~~~~~~~-  341 (576)
T 2acx_A          263 LTLMNGGDLKFHIYHMGQAGFPEARAVFYAAEICCGLEDLHRERIVYRDLKPENILLDDHGHIRISDLGLAVHVPEGQT-  341 (576)
T ss_dssp             ECCCCSCBHHHHHHSSSSCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTSCEEECCCTTCEECCTTCC-
T ss_pred             EEcCCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHCCEeccCCchheEEEeCCCCeEEEecccceecccCcc-
Confidence                                        367899999999999999999999999999999999999999987654322 


Q ss_pred             ccccccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCC
Q 045449          730 SKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       730 ~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                        ....+||+.|+|||++.+..|+.++||||+||++|+|++|..||...
T Consensus       342 --~~~~~GT~~Y~APEvl~~~~~~~~~DiwSLGvilyeLltG~~PF~~~  388 (576)
T 2acx_A          342 --IKGRVGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIAGQSPFQQR  388 (576)
T ss_dssp             --EECCCSCGGGCCHHHHTTCEESSHHHHHHHHHHHHHHHHSSCSSSCS
T ss_pred             --ccccCCCccccCHHHHcCCCCCccchHHHHHHHHHHHHhCCCCCccc
Confidence              23458999999999999989999999999999999999999999764

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A*

Probab=99.89  E-value=6.2e-25  Score=235.74  Aligned_cols=153  Identities=26%  Similarity=0.461  Sum_probs=121.9

Q ss_pred             hccCCccceeeccC------------CeEEEEEEehHh---hHHHHHHHHHHHHHHhhcchhhHHH--------------
Q 045449          627 TDRFSENNLIGIGN------------GMEVAVKVFHQQ---YERALKSFEDECEVRKRIRHRNLVK--------------  677 (823)
Q Consensus       627 t~~f~~~~~lg~g~------------~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~--------------  677 (823)
                      .++|...+.||.|+            ++.||||++...   .....+.|.+|++++++++||||++              
T Consensus        11 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~   90 (311)
T 3ork_A           11 SDRYELGEILGFGGMSEVHLARDLRDHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAGPL   90 (311)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECTTTTTSHHHHHHHHHHHTTCCCCCCTTBCCEEEEEEEEETTEEE
T ss_pred             cCcEEEEEEEccCCCEEEEEEEECCCCceEEEEEeCccccCCHHHHHHHHHHHHHHHcCCCCCcceEEEeeeccCCCCcc
Confidence            36788888899886            677999999754   2455578999999999999999998              


Q ss_pred             ------------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCC
Q 045449          678 ------------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGED  727 (823)
Q Consensus       678 ------------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~  727 (823)
                                                    ++.|++.+|+|+|+.+|+||||||+||+++.++.+||+|||+++......
T Consensus        91 ~~lv~e~~~g~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~a~~~~~~~  170 (311)
T 3ork_A           91 PYIVMEYVDGVTLRDIVHTEGPMTPKRAIEVIADACQALNFSHQNGIIHRDVKPANIMISATNAVKVMDFGIARAIADSG  170 (311)
T ss_dssp             EEEEEECCCEEEHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEEETTSCEEECCCSCC-------
T ss_pred             cEEEEecCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCCCcCCCCHHHEEEcCCCCEEEeeccCcccccccc
Confidence                                          36788999999999999999999999999999999999999998764332


Q ss_pred             c-cccccccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCCc
Q 045449          728 Q-LSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGETC  779 (823)
Q Consensus       728 ~-~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~~  779 (823)
                      . ........||+.|+|||++.+..++.++||||+||++|++++|..||.+..
T Consensus       171 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~g~~pf~~~~  223 (311)
T 3ork_A          171 NSVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDS  223 (311)
T ss_dssp             -----------CCTTCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSS
T ss_pred             cccccccccCcCcccCCHHHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCC
Confidence            2 122334579999999999999899999999999999999999999997643

>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*

Probab=99.89  E-value=3.9e-24  Score=240.28  Aligned_cols=150  Identities=27%  Similarity=0.340  Sum_probs=121.7

Q ss_pred             hccCCccceeeccC------------CeEEEEEEehHh--hHHHHHHHHHHHHHHhhcchhhHHH---------------
Q 045449          627 TDRFSENNLIGIGN------------GMEVAVKVFHQQ--YERALKSFEDECEVRKRIRHRNLVK---------------  677 (823)
Q Consensus       627 t~~f~~~~~lg~g~------------~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~---------------  677 (823)
                      .++|...+.||.|+            +..||||++...  .....+++.+|++++++++||||++               
T Consensus        25 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~  104 (432)
T 3n9x_A           25 PDNYIIKHLIGRGSYGYVYLAYDKNTEKNVAIKKVNRMFEDLIDCKRILREITILNRLKSDYIIRLYDLIIPDDLLKFDE  104 (432)
T ss_dssp             CTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSTTTSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCCC
T ss_pred             cCCEEEEEEEeecCCEEEEEEEECCCCcEEEEEEeCchhcChHHHHHHHHHHHHHHHcCCCCcceEEEEEecCCCCcCCe
Confidence            46888889999886            567999999643  2445578999999999999999997               


Q ss_pred             -----------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCc
Q 045449          678 -----------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQ  728 (823)
Q Consensus       678 -----------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~  728 (823)
                                                   ++.|++.+|+|+|+.+|+||||||+|||++.++.+||+|||+|+.......
T Consensus       105 ~~lv~e~~~~~L~~~~~~~~~l~~~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~~kL~DFGla~~~~~~~~  184 (432)
T 3n9x_A          105 LYIVLEIADSDLKKLFKTPIFLTEEHIKTILYNLLLGENFIHESGIIHRDLKPANCLLNQDCSVKVCDFGLARTINSEKD  184 (432)
T ss_dssp             EEEEEECCSEEHHHHHHSSCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTCEEC-----
T ss_pred             EEEEEecCCcCHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHeEECCCCCEEEccCCCccccccccc
Confidence                                         467999999999999999999999999999999999999999997643321


Q ss_pred             c--------------------ccccccccCCCcCccccc-CCCccccccceehhhhhhccccCCCCCcC
Q 045449          729 L--------------------SKQTQTLATIGYMAPEYG-TKGRVSTRGDVCSFGIISGGKETRSMTVG  776 (823)
Q Consensus       729 ~--------------------~~~~~~~gt~~y~aPE~~-~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~  776 (823)
                      .                    ...+..+||+.|+|||++ ....|+.++||||+||++|++++|..|+.
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~~~~~~~~~~~~DiwSlG~il~ell~g~~p~~  253 (432)
T 3n9x_A          185 TNIVNDLEENEEPGPHNKNLKKQLTSHVVTRWYRAPELILLQENYTKSIDIWSTGCIFAELLNMLQSHI  253 (432)
T ss_dssp             --------------------------CCCCCTTCCHHHHTTCSCCCTHHHHHHHHHHHHHHHTTCTTTC
T ss_pred             ccccccccccccccccccchhccccCCCCCccccCHHHHhcCCCCCcccccchHHHHHHHHHhcccccc
Confidence            1                    123557899999999985 55669999999999999999998655553

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7

Probab=99.89  E-value=2.8e-24  Score=237.04  Aligned_cols=149  Identities=22%  Similarity=0.330  Sum_probs=128.3

Q ss_pred             hccCCccceeeccC------------CeEEEEEEehHhhHHHHHHHHHHHHHHhhcchhhHHH-----------------
Q 045449          627 TDRFSENNLIGIGN------------GMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVK-----------------  677 (823)
Q Consensus       627 t~~f~~~~~lg~g~------------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~-----------------  677 (823)
                      .++|...+.||.|+            +..||+|++..........+.+|++++++++||||++                 
T Consensus        50 ~~~y~i~~~LG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~lv~E~  129 (387)
T 1kob_A           50 YDYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPKLINLHDAFEDKYEMVLILEF  129 (387)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCSTTBCCEEEEEECSSEEEEEEEC
T ss_pred             ccceEEEEEEecCCCEEEEEEEECCCCCEEEEEEecccchhhHHHHHHHHHHHHhCCCcCCCeEEEEEEeCCEEEEEEEc
Confidence            46788888999886            5679999997665555578999999999999999998                 


Q ss_pred             ------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCC--CCcEEEeecccccccCCCCcccc
Q 045449          678 ------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDE--DMVAHISDFGIAKLLSGEDQLSK  731 (823)
Q Consensus       678 ------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~--~~~~kl~DfGla~~~~~~~~~~~  731 (823)
                                              ++.|++.+|+|+|+.+|+||||||+|||++.  ++.+||+|||+|+.......   
T Consensus       130 ~~gg~L~~~l~~~~~~l~~~~~~~i~~qi~~aL~~LH~~givHrDlkp~NIll~~~~~~~vkL~DFG~a~~~~~~~~---  206 (387)
T 1kob_A          130 LSGGELFDRIAAEDYKMSEAEVINYMRQACEGLKHMHEHSIVHLDIKPENIMCETKKASSVKIIDFGLATKLNPDEI---  206 (387)
T ss_dssp             CCCCBHHHHTTCTTCCBCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESSTTCCCEEECCCTTCEECCTTSC---
T ss_pred             CCCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhCCeeecccchHHeEEecCCCCceEEEecccceecCCCcc---
Confidence                                    4678999999999999999999999999974  57899999999987654322   


Q ss_pred             ccccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCC
Q 045449          732 QTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       732 ~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      .....||+.|+|||++.+..++.++||||+||++|++++|..||.+.
T Consensus       207 ~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~Pf~~~  253 (387)
T 1kob_A          207 VKVTTATAEFAAPEIVDREPVGFYTDMWAIGVLGYVLLSGLSPFAGE  253 (387)
T ss_dssp             EEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCS
T ss_pred             eeeeccCCCccCchhccCCCCCCcccEeeHhHHHHHHHhCCCCCCCC
Confidence            23457999999999999999999999999999999999999999764

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7

Probab=99.89  E-value=2.2e-24  Score=232.36  Aligned_cols=148  Identities=23%  Similarity=0.275  Sum_probs=127.1

Q ss_pred             hccCCccceeeccC------------CeEEEEEEehHhhHHHHHHHHHHHHHHhhcchhhHHH-----------------
Q 045449          627 TDRFSENNLIGIGN------------GMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVK-----------------  677 (823)
Q Consensus       627 t~~f~~~~~lg~g~------------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~-----------------  677 (823)
                      .++|...+.||.|+            +..||+|++.... ...+.+.+|++++++++||||++                 
T Consensus         4 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~-~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~e~   82 (321)
T 1tki_A            4 YEKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKG-TDQVLVKKEISILNIARHRNILHLHESFESMEELVMIFEF   82 (321)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCT-HHHHHHHHHHHHHHHSCCTTBCCEEEEEEETTEEEEEECC
T ss_pred             hhceEeeeEEecCCCeEEEEEEECCCCcEEEEEEEecCc-ccHHHHHHHHHHHHhCCCCCCCeEeEEEecCCEEEEEEEe
Confidence            46788888899886            5679999986543 33467899999999999999998                 


Q ss_pred             ------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCC--CCcEEEeecccccccCCCCcccc
Q 045449          678 ------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDE--DMVAHISDFGIAKLLSGEDQLSK  731 (823)
Q Consensus       678 ------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~--~~~~kl~DfGla~~~~~~~~~~~  731 (823)
                                              ++.|++.+|+|+|+.+|+||||||+||+++.  ++.+||+|||+++.......   
T Consensus        83 ~~g~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH~~givH~Dlkp~NIl~~~~~~~~~kl~Dfg~a~~~~~~~~---  159 (321)
T 1tki_A           83 ISGLDIFERINTSAFELNEREIVSYVHQVCEALQFLHSHNIGHFDIRPENIIYQTRRSSTIKIIEFGQARQLKPGDN---  159 (321)
T ss_dssp             CCCCBHHHHHTSSSCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESSSSCCCEEECCCTTCEECCTTCE---
T ss_pred             CCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCCCcCCCCHHHEEEccCCCCCEEEEECCCCeECCCCCc---
Confidence                                    4678999999999999999999999999986  78999999999987654332   


Q ss_pred             ccccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCC
Q 045449          732 QTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       732 ~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      .....||+.|+|||++.+..++.++||||+||++|++++|..||.+.
T Consensus       160 ~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~  206 (321)
T 1tki_A          160 FRLLFTAPEYYAPEVHQHDVVSTATDMWSLGTLVYVLLSGINPFLAE  206 (321)
T ss_dssp             EEEEESCGGGSCHHHHTTCEECHHHHHHHHHHHHHHHHHSSCTTCCS
T ss_pred             cccccCChhhcCcHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCcCC
Confidence            23457999999999999888999999999999999999999999664

>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*

Probab=99.89  E-value=1.1e-24  Score=238.98  Aligned_cols=150  Identities=26%  Similarity=0.279  Sum_probs=118.4

Q ss_pred             hccCCccceeeccC------------CeEEEEEEehHhh---HHHHHHHHHHHHH-HhhcchhhHHH-------------
Q 045449          627 TDRFSENNLIGIGN------------GMEVAVKVFHQQY---ERALKSFEDECEV-RKRIRHRNLVK-------------  677 (823)
Q Consensus       627 t~~f~~~~~lg~g~------------~~~vavK~~~~~~---~~~~~~~~~E~~~-l~~l~h~niv~-------------  677 (823)
                      .++|...+.||+|+            +..||||++....   ....+.+.+|..+ ++.++||||++             
T Consensus        37 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~e~~~ll~~~~hp~Iv~l~~~~~~~~~~~l  116 (373)
T 2r5t_A           37 PSDFHFLKVIGKGSFGKVLLARHKAEEVFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSFQTADKLYF  116 (373)
T ss_dssp             GGGEEEEEEEECCTTCEEEEEEETTTCCEEEEEEEEGGGBC-------------CCBCCCCCTTBCCEEEEEECSSEEEE
T ss_pred             hhheEEEEEEeeCCCeEEEEEEEcCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHHhCCCCCCCCEEEEEEeCCEEEE
Confidence            35788888999886            5669999997553   3344567778877 57789999998             


Q ss_pred             ---------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccc
Q 045449          678 ---------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLS  730 (823)
Q Consensus       678 ---------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~  730 (823)
                                                 +++|++.+|+|+|+.+|+||||||+|||++.++++||+|||+++.......  
T Consensus       117 v~E~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~givHrDlkp~NIll~~~g~ikL~DFG~a~~~~~~~~--  194 (373)
T 2r5t_A          117 VLDYINGGELFYHLQRERCFLEPRARFYAAEIASALGYLHSLNIVYRDLKPENILLDSQGHIVLTDFGLCKENIEHNS--  194 (373)
T ss_dssp             EEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTSCEEECCCCBCGGGBCCCC--
T ss_pred             EEeCCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCceecCCCHHHEEECCCCCEEEeeCccccccccCCC--
Confidence                                       467899999999999999999999999999999999999999986433221  


Q ss_pred             cccccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCC
Q 045449          731 KQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       731 ~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      .....+||+.|+|||++.+..|+.++||||+||++|+|++|..||.+.
T Consensus       195 ~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~  242 (373)
T 2r5t_A          195 TTSTFCGTPEYLAPEVLHKQPYDRTVDWWCLGAVLYEMLYGLPPFYSR  242 (373)
T ss_dssp             CCCSBSCCCCCCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCS
T ss_pred             ccccccCCccccCHHHhCCCCCCchhhhHHHHHHHHHHHcCCCCCCCC
Confidence            234568999999999999999999999999999999999999999654

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}

Probab=99.89  E-value=2.7e-24  Score=236.44  Aligned_cols=144  Identities=24%  Similarity=0.357  Sum_probs=121.8

Q ss_pred             cceeeccC------------CeEEEEEEehHhhHHHHHHHHHHHHHHhhcchhhHHH-----------------------
Q 045449          633 NNLIGIGN------------GMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVK-----------------------  677 (823)
Q Consensus       633 ~~~lg~g~------------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~-----------------------  677 (823)
                      .+.||.|+            |..||||++........+.|.+|++++++++||||++                       
T Consensus        94 ~~~lG~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~E~~~~~~L  173 (373)
T 2x4f_A           94 TEILGGGRFGQVHKCEETATGLKLAAKIIKTRGMKDKEEVKNEISVMNQLDHANLIQLYDAFESKNDIVLVMEYVDGGEL  173 (373)
T ss_dssp             EEECC-----CEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEECCTTCEE
T ss_pred             ceEEecCcCEEEEEEEEcCCCcEEEEEEEcccccccHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEeCCCCCcH
Confidence            45677764            6679999998765556678999999999999999998                       


Q ss_pred             ------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEe--CCCCcEEEeecccccccCCCCcccccccccc
Q 045449          678 ------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLL--DEDMVAHISDFGIAKLLSGEDQLSKQTQTLA  737 (823)
Q Consensus       678 ------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl--~~~~~~kl~DfGla~~~~~~~~~~~~~~~~g  737 (823)
                                        ++.|++.+|+|+|+.+|+||||||+|||+  +.++.+||+|||+++.......   ....+|
T Consensus       174 ~~~l~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~~~kl~DFG~a~~~~~~~~---~~~~~g  250 (373)
T 2x4f_A          174 FDRIIDESYNLTELDTILFMKQICEGIRHMHQMYILHLDLKPENILCVNRDAKQIKIIDFGLARRYKPREK---LKVNFG  250 (373)
T ss_dssp             HHHHHHTGGGCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEEEETTTTEEEECCCSSCEECCTTCB---CCCCCS
T ss_pred             HHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCcccccCCHHHEEEecCCCCcEEEEeCCCceecCCccc---cccccC
Confidence                              35789999999999999999999999999  5678999999999987654332   234579


Q ss_pred             CCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCCc
Q 045449          738 TIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGETC  779 (823)
Q Consensus       738 t~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~~  779 (823)
                      |+.|+|||++.+..++.++|||||||+++++++|..||.+..
T Consensus       251 t~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~  292 (373)
T 2x4f_A          251 TPEFLAPEVVNYDFVSFPTDMWSVGVIAYMLLSGLSPFLGDN  292 (373)
T ss_dssp             SCTTCCHHHHTTCBCCHHHHHHHHHHHHHHHHHSSCTTCCSS
T ss_pred             CCcEeChhhccCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCC
Confidence            999999999998899999999999999999999999997643

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*

Probab=99.88  E-value=1.2e-24  Score=238.37  Aligned_cols=163  Identities=23%  Similarity=0.288  Sum_probs=134.3

Q ss_pred             ccCHHHHHHHhccCCccceeeccC-----------------CeEEEEEEehHhh-HHHHHHHHHHHHHHhhc-chhhHHH
Q 045449          617 RFSYHELLRATDRFSENNLIGIGN-----------------GMEVAVKVFHQQY-ERALKSFEDECEVRKRI-RHRNLVK  677 (823)
Q Consensus       617 ~~~~~~l~~at~~f~~~~~lg~g~-----------------~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l-~h~niv~  677 (823)
                      .+...+..-..++|...+.||.|+                 ++.||||++.... ....+.|.+|++++.++ +||||++
T Consensus        11 ~~~~~~~~~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpniv~   90 (359)
T 3vhe_A           11 PYDASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVN   90 (359)
T ss_dssp             CCCHHHHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCC
T ss_pred             CCCcccccccccceeeceeecCCCCceEEEEEeccccccccceEEEEEEecCcCCHHHHHHHHHHHHHHHhhcCCcceee
Confidence            345556666678999999999986                 2569999997543 44557899999999999 8899998


Q ss_pred             H-------------------------------------------------------------------------------
Q 045449          678 I-------------------------------------------------------------------------------  678 (823)
Q Consensus       678 ~-------------------------------------------------------------------------------  678 (823)
                      +                                                                               
T Consensus        91 ~~~~~~~~~~~~~iv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (359)
T 3vhe_A           91 LLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKTKGARFRQGKDYVGAIPVDLKRRLDSITSSQSSASSGFVEE  170 (359)
T ss_dssp             EEEEECSTTSCCEEEEECCTTEEHHHHHHTTTTSBCSCC-----------------------------------------
T ss_pred             eeeeeecCCCceEEEEEecCCCcHHHHHHhccccccccccccchhhcccccccccchhhhccccccCccccccccccccc
Confidence            1                                                                               


Q ss_pred             ----------------------------HHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccc
Q 045449          679 ----------------------------ISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLS  730 (823)
Q Consensus       679 ----------------------------~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~  730 (823)
                                                  +.|++.+|+|+|+.+|+||||||+||+++.++.+||+|||+++.........
T Consensus       171 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ql~~aL~~LH~~~ivH~Dikp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~  250 (359)
T 3vhe_A          171 KSLSDVEEEEAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYV  250 (359)
T ss_dssp             -------------CTTTTCBCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGGCEEECCCGGGSCTTSCTTCE
T ss_pred             cccchhhhcccccchhccccCHHHHHHHHHHHHHHHHHHHHCCcccCCCChhhEEEcCCCcEEEEeccceeeecccccch
Confidence                                        1377889999999999999999999999999999999999998765443333


Q ss_pred             cccccccCCCcCcccccCCCccccccceehhhhhhccccC-CCCCcCCCc
Q 045449          731 KQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKET-RSMTVGETC  779 (823)
Q Consensus       731 ~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~-~~~~~~~~~  779 (823)
                      ......||+.|+|||++.+..++.++|||||||++|++++ |..||.+..
T Consensus       251 ~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~  300 (359)
T 3vhe_A          251 RKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVK  300 (359)
T ss_dssp             EC--CEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCC
T ss_pred             hccccCCCceeEChhhhcCCCCCchhhhhhHHHHHHHHHhcCCCCCCccc
Confidence            3445678999999999988899999999999999999998 999997643

>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*

Probab=99.88  E-value=2.7e-24  Score=232.44  Aligned_cols=149  Identities=23%  Similarity=0.291  Sum_probs=116.0

Q ss_pred             ccCCccceeeccC---------------CeEEEEEEehHhh----HHHHHHHHHHHHHHhhcchhhHHH-----------
Q 045449          628 DRFSENNLIGIGN---------------GMEVAVKVFHQQY----ERALKSFEDECEVRKRIRHRNLVK-----------  677 (823)
Q Consensus       628 ~~f~~~~~lg~g~---------------~~~vavK~~~~~~----~~~~~~~~~E~~~l~~l~h~niv~-----------  677 (823)
                      ++|...+.||.|+               +..||||+++...    ......+.+|++++++++||||++           
T Consensus        17 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~   96 (327)
T 3a62_A           17 ECFELLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEEVKHPFIVDLIYAFQTGGKL   96 (327)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEECSSTTTTCEEEEEEECCC--------------HHHHHHHCCCTTBCCEEEEEECSSCE
T ss_pred             HHeEEEEEEEeCCCEEEEEEEEeccCCCCcEEEEEEEEHHHhhhhhhHHHHHHHHHHHHHhCCCCCccceeEEEEcCCEE
Confidence            5677778888775               5669999987542    234467889999999999999998           


Q ss_pred             -----------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCc
Q 045449          678 -----------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQ  728 (823)
Q Consensus       678 -----------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~  728 (823)
                                                   +++|++.+|+|+|+.+|+||||||+||+++.++.+||+|||+++.......
T Consensus        97 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~al~~lH~~~ivH~Dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~  176 (327)
T 3a62_A           97 YLILEYLSGGELFMQLEREGIFMEDTACFYLAEISMALGHLHQKGIIYRDLKPENIMLNHQGHVKLTDFGLCKESIHDGT  176 (327)
T ss_dssp             EEEEECCTTEEHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCTTTEEECTTSCEEECCCSCC--------
T ss_pred             EEEEeCCCCCcHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCEEcccCCHHHeEECCCCcEEEEeCCcccccccCCc
Confidence                                         367899999999999999999999999999999999999999986433221


Q ss_pred             cccccccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCC
Q 045449          729 LSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       729 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                        .....+||+.|+|||++.+..++.++||||+||++|++++|..||...
T Consensus       177 --~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~  224 (327)
T 3a62_A          177 --VTHTFCGTIEYMAPEILMRSGHNRAVDWWSLGALMYDMLTGAPPFTGE  224 (327)
T ss_dssp             ----CTTSSCCTTSCHHHHTTSCCCTHHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred             --cccccCCCcCccCHhhCcCCCCCCcccchhHHHHHHHHHHCCCCCCCC
Confidence              233467999999999999989999999999999999999999999764

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}

Probab=99.88  E-value=5.4e-24  Score=240.52  Aligned_cols=148  Identities=27%  Similarity=0.433  Sum_probs=126.5

Q ss_pred             ccCCccceeeccC------------CeEEEEEEehHhhH---HHHHHHHHHHHHHhhcchhhHHH---------------
Q 045449          628 DRFSENNLIGIGN------------GMEVAVKVFHQQYE---RALKSFEDECEVRKRIRHRNLVK---------------  677 (823)
Q Consensus       628 ~~f~~~~~lg~g~------------~~~vavK~~~~~~~---~~~~~~~~E~~~l~~l~h~niv~---------------  677 (823)
                      ++|...+.||.|+            |+.||||++.....   ...+.+.+|++++++++||||++               
T Consensus        16 ~~Y~l~~~LG~G~fg~V~~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~~~~~~~~~~~lv~   95 (476)
T 2y94_A           16 GHYILGDTLGVGTFGKVKVGKHELTGHKVAVKILNRQKIRSLDVVGKIRREIQNLKLFRHPHIIKLYQVISTPSDIFMVM   95 (476)
T ss_dssp             TTEEEEEEEECCSSSCEEEEEETTTCCEEEEEEEEHHHHHHTTTHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             cCEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEE
Confidence            5677778888875            67799999976532   23467999999999999999998               


Q ss_pred             -------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccc
Q 045449          678 -------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQ  732 (823)
Q Consensus       678 -------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~  732 (823)
                                               ++.|++.+|+|+|+.+|+||||||+||+++.++.+||+|||+++.......   .
T Consensus        96 E~~~gg~L~~~l~~~~~l~~~~~~~i~~qi~~aL~~LH~~givHrDLkp~NIll~~~~~vkL~DFG~a~~~~~~~~---~  172 (476)
T 2y94_A           96 EYVSGGELFDYICKNGRLDEKESRRLFQQILSGVDYCHRHMVVHRDLKPENVLLDAHMNAKIADFGLSNMMSDGEF---L  172 (476)
T ss_dssp             ECCSSEEHHHHTTSSSSCCHHHHHHHHHHHHHHHHHHHTTTEECSCCSGGGEEECTTCCEEECCCSSCEECCTTCC---B
T ss_pred             eCCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCCCcccccHHHEEEecCCCeEEEeccchhhcccccc---c
Confidence                                     467999999999999999999999999999999999999999987654322   2


Q ss_pred             cccccCCCcCcccccCCCcc-ccccceehhhhhhccccCCCCCcCCC
Q 045449          733 TQTLATIGYMAPEYGTKGRV-STRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       733 ~~~~gt~~y~aPE~~~~~~~-~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      ...+||+.|+|||++.+..+ +.++||||+||++|++++|..||.+.
T Consensus       173 ~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlGvil~elltG~~Pf~~~  219 (476)
T 2y94_A          173 RTSCGSPNYAAPEVISGRLYAGPEVDIWSSGVILYALLCGTLPFDDD  219 (476)
T ss_dssp             CCCCSCSTTCCHHHHTTCCBCSHHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             cccCCCcCeEChhhccCCCCCCCcceehhhHHHHHHHhhCCCCCCCC
Confidence            34679999999999988776 78999999999999999999999764

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*

Probab=99.88  E-value=4.5e-24  Score=236.62  Aligned_cols=152  Identities=19%  Similarity=0.288  Sum_probs=126.7

Q ss_pred             hccCCccceeecc--C------------CeEEEEEEehHhh--HHHHHHHHHHHHHHhhcchhhHHH-------------
Q 045449          627 TDRFSENNLIGIG--N------------GMEVAVKVFHQQY--ERALKSFEDECEVRKRIRHRNLVK-------------  677 (823)
Q Consensus       627 t~~f~~~~~lg~g--~------------~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~-------------  677 (823)
                      .++|...+.||.|  +            +..||||++....  ....+.+.+|++++++++|||||+             
T Consensus        24 ~~~y~~~~~lG~G~~~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~l  103 (389)
T 3gni_B           24 GGCYELLTVIGKGFEDLMTVNLARYKPTGEYVTVRRINLEACSNEMVTFLQGELHVSKLFNHPNIVPYRATFIADNELWV  103 (389)
T ss_dssp             GGGEEEEEEEEEETTTTEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEE
T ss_pred             CCcEEEEecccCCcCCceEEEEEEEcCCCCEEEEEEecccccChHHHHHHHHHHHHHHhCCCCCCCcEeEEEEECCEEEE
Confidence            4678888899988  4            6679999997553  455678999999999999999998             


Q ss_pred             -----------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCc
Q 045449          678 -----------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQ  728 (823)
Q Consensus       678 -----------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~  728 (823)
                                                   ++.|++.+|+|+|+.+|+||||||+|||++.++.+||+|||.+........
T Consensus       104 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~ivHrDlkp~NIll~~~~~~kl~dfg~~~~~~~~~~  183 (389)
T 3gni_B          104 VTSFMAYGSAKDLICTHFMDGMNELAIAYILQGVLKALDYIHHMGYVHRSVKASHILISVDGKVYLSGLRSNLSMISHGQ  183 (389)
T ss_dssp             EEECCTTCBHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTCCEEECCGGGCEECEETTE
T ss_pred             EEEccCCCCHHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCCEEEcccccceeeccccc
Confidence                                         356889999999999999999999999999999999999999875432111


Q ss_pred             -----cccccccccCCCcCcccccCC--CccccccceehhhhhhccccCCCCCcCCC
Q 045449          729 -----LSKQTQTLATIGYMAPEYGTK--GRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       729 -----~~~~~~~~gt~~y~aPE~~~~--~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                           .......+||+.|+|||++.+  ..|+.++||||+||++|++++|..||.+.
T Consensus       184 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~  240 (389)
T 3gni_B          184 RQRVVHDFPKYSVKVLPWLSPEVLQQNLQGYDAKSDIYSVGITACELANGHVPFKDM  240 (389)
T ss_dssp             ECSCBCCCCTTCTTTGGGSCHHHHSTTSSCBCTHHHHHHHHHHHHHHHHSSCTTTTC
T ss_pred             cccccccccccccccccccCHHHHhccCCCCCcHhHHHHHHHHHHHHHHCCCCCCCC
Confidence                 111223478999999999887  57999999999999999999999999763

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}

Probab=99.88  E-value=1e-24  Score=239.62  Aligned_cols=152  Identities=23%  Similarity=0.284  Sum_probs=123.6

Q ss_pred             ccCCccceeeccC-----------------CeEEEEEEehHh-hHHHHHHHHHHHHHHhhcchhhHHH------------
Q 045449          628 DRFSENNLIGIGN-----------------GMEVAVKVFHQQ-YERALKSFEDECEVRKRIRHRNLVK------------  677 (823)
Q Consensus       628 ~~f~~~~~lg~g~-----------------~~~vavK~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~------------  677 (823)
                      ++|...+.||.|+                 +..||||++... ......+|.+|+.++++++||||++            
T Consensus        71 ~~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~  150 (367)
T 3l9p_A           71 KNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQSLPRF  150 (367)
T ss_dssp             GGEEEEEECCCCSSSCEEEEEECC-----CCEEEEEEECCSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCE
T ss_pred             hHeEEeeEeeeCCCEEEEEEEEccCCCCCcceeEEEEecccccChhhHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCCE
Confidence            4566667777775                 346999998643 2445568999999999999999998            


Q ss_pred             -----------------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCC---cEEEeeccc
Q 045449          678 -----------------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDM---VAHISDFGI  719 (823)
Q Consensus       678 -----------------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~---~~kl~DfGl  719 (823)
                                                         ++.|++.+|+|+|+.+|+||||||+|||++.++   .+||+|||+
T Consensus       151 lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~~~~~~~kL~DFG~  230 (367)
T 3l9p_A          151 ILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEENHFIHRDIAARNCLLTCPGPGRVAKIGDFGM  230 (367)
T ss_dssp             EEEECCTTEEHHHHHHHHSCCSSSCCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEESCSSTTCCEEECCCHH
T ss_pred             EEEEeCCCCCHHHHHHhhccccCccccccHHHHHHHHHHHHHHHHHHHhCCeeCCCCChhhEEEecCCCCceEEECCCcc
Confidence                                               356888999999999999999999999999554   599999999


Q ss_pred             ccccCCCCccccccccccCCCcCcccccCCCccccccceehhhhhhccccC-CCCCcCCCc
Q 045449          720 AKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKET-RSMTVGETC  779 (823)
Q Consensus       720 a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~-~~~~~~~~~  779 (823)
                      |+...............||+.|+|||++.+..++.++|||||||+++++++ |..||....
T Consensus       231 a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DvwslG~il~ellt~g~~pf~~~~  291 (367)
T 3l9p_A          231 ARDIYRAGYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKS  291 (367)
T ss_dssp             HHHHHHHSSCTTCCGGGSCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCC
T ss_pred             ccccccccccccCCCcCCcccEECHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCC
Confidence            986543322223344578999999999988899999999999999999998 889987643

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...

Probab=99.88  E-value=2.3e-24  Score=228.63  Aligned_cols=152  Identities=30%  Similarity=0.397  Sum_probs=117.4

Q ss_pred             hccCCccceeeccC---------CeEEEEEEehHhh--HHHHHHHHHHHHHHhhcchhhHHH------------------
Q 045449          627 TDRFSENNLIGIGN---------GMEVAVKVFHQQY--ERALKSFEDECEVRKRIRHRNLVK------------------  677 (823)
Q Consensus       627 t~~f~~~~~lg~g~---------~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~------------------  677 (823)
                      .++|...+.||.|+         ...||||++....  ....+.|.+|++++++++||||++                  
T Consensus        23 ~~~y~~~~~lG~G~~g~Vy~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~lv~e~~~  102 (289)
T 3og7_A           23 DGQITVGQRIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTAPQLAIVTQWCE  102 (289)
T ss_dssp             TTSCEEEEEEEECSSEEEEEEESSSEEEEEEESCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSCEEEEECCC
T ss_pred             ccceeeeeEecCCCCeEEEEEEEcCceEEEEEeccCCCHHHHHHHHHHHHHHHhCCCCcEEEEEeeccCCccEEEEEecC
Confidence            35788889999987         3348999986432  455678999999999999999997                  


Q ss_pred             ----------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCcccccccc
Q 045449          678 ----------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQT  735 (823)
Q Consensus       678 ----------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~  735 (823)
                                            ++.|++.+|+|+|+.+|+||||||+||+++.++.+||+|||+++..............
T Consensus       103 ~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~L~~lH~~~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~  182 (289)
T 3og7_A          103 GSSLYHHLHASETKFEMKKLIDIARQTARGMDYLHAKSIIHRDLKSNNIFLHEDNTVKIGDFGLATEKSRWSGSHQFEQL  182 (289)
T ss_dssp             EEEHHHHHTTC---CCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEETTTEEEECCCC-----------------
T ss_pred             CCcHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhCCcccccCccceEEECCCCCEEEccceecccccccccccccccc
Confidence                                  3578899999999999999999999999999999999999999865433222233446


Q ss_pred             ccCCCcCcccccC---CCccccccceehhhhhhccccCCCCCcCCC
Q 045449          736 LATIGYMAPEYGT---KGRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       736 ~gt~~y~aPE~~~---~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      .||+.|+|||++.   +..++.++||||+||+++++++|..||...
T Consensus       183 ~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~  228 (289)
T 3og7_A          183 SGSILWMAPEVIRMQDSNPYSFQSDVYAFGIVLYELMTGQLPYSNI  228 (289)
T ss_dssp             -CCCTTCCHHHHC----CCSCHHHHHHHHHHHHHHHHHSSCTTSSC
T ss_pred             CCCccccCchhhcccCCCCCCcccchHHHHHHHHHHHHCCCCcccc
Confidence            7999999999886   566889999999999999999999999764

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*

Probab=99.88  E-value=1.1e-24  Score=246.04  Aligned_cols=150  Identities=23%  Similarity=0.269  Sum_probs=118.5

Q ss_pred             hccCCccceeeccC------------CeEEEEEEehHhh---HHHHHHHHHHHHHHhhcchhhHHH--------------
Q 045449          627 TDRFSENNLIGIGN------------GMEVAVKVFHQQY---ERALKSFEDECEVRKRIRHRNLVK--------------  677 (823)
Q Consensus       627 t~~f~~~~~lg~g~------------~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~--------------  677 (823)
                      .++|...+.||.|+            |..||||++....   ......+.+|++++++++||||++              
T Consensus       147 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~lv  226 (446)
T 4ejn_A          147 MNEFEYLKLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTALKYSFQTHDRLCFV  226 (446)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHC-------------CCCCCSCTTSCCEEEEEEETTEEEEE
T ss_pred             hHHcEEeEEEeeCcCEEEEEEEEcCCCCEEEEEEEEhhhhhhhHHHHHHHHHHHHHHhCCCCeEeeEEEEEeeCCEEEEE
Confidence            46788889999986            5679999997653   334467889999999999999998              


Q ss_pred             --------------------------HHHHHHHHhhhcCC-CCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccc
Q 045449          678 --------------------------IISSSLEYLHFGHS-IPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLS  730 (823)
Q Consensus       678 --------------------------~~~~~l~~L~~~h~-~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~  730 (823)
                                                ++.|++.+|+|+|+ .+|+||||||+|||++.++.+||+|||+|+.......  
T Consensus       227 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~~giiHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~--  304 (446)
T 4ejn_A          227 MEYANGGELFFHLSRERVFSEDRARFYGAEIVSALDYLHSEKNVVYRDLKLENLMLDKDGHIKITDFGLCKEGIKDGA--  304 (446)
T ss_dssp             ECCCSSCBHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHTCCCCCCCCGGGEEECSSSCEEECCCCCCCTTCC-----
T ss_pred             EeeCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhcCCEEECCCCHHHEEECCCCCEEEccCCCceeccCCCc--
Confidence                                      35788999999998 9999999999999999999999999999986433222  


Q ss_pred             cccccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCC
Q 045449          731 KQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       731 ~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      .....+||+.|+|||++.+..|+.++||||+||+++++++|..||...
T Consensus       305 ~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~  352 (446)
T 4ejn_A          305 TMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQ  352 (446)
T ss_dssp             --CCSSSCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             ccccccCCccccCHhhcCCCCCCCccchhhhHHHHHHHhhCCCCCCCC
Confidence            234568999999999999999999999999999999999999999664

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}

Probab=99.88  E-value=2.3e-24  Score=232.58  Aligned_cols=154  Identities=21%  Similarity=0.331  Sum_probs=115.8

Q ss_pred             HhccCCccceeeccC------------C---eEEEEEEehHhh--HHHHHHHHHHHHHHhhcchhhHHH-----------
Q 045449          626 ATDRFSENNLIGIGN------------G---MEVAVKVFHQQY--ERALKSFEDECEVRKRIRHRNLVK-----------  677 (823)
Q Consensus       626 at~~f~~~~~lg~g~------------~---~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~-----------  677 (823)
                      ..++|...+.||.|+            +   ..||||++....  ....++|.+|++++++++||||++           
T Consensus        21 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~  100 (323)
T 3qup_A           21 PEQQFTLGRMLGKGEFGSVREAQLKQEDGSFVKVAVKMLKADIIASSDIEEFLREAACMKEFDHPHVAKLVGVSLRSRAK  100 (323)
T ss_dssp             C---CEEEEEEEEETTEEEEEEEC-------CEEEEEEC------CHHHHHHHHHHHHHTTCCCTTBCCCCEEEECC---
T ss_pred             ChhHeEEeceecccCCeEEEEEEEcccCCcceeEEEEEecccccCHHHHHHHHHHHHHHHHCCCCceehhhceeeccccc
Confidence            356788889999886            1   268999997542  344678999999999999999987           


Q ss_pred             -----------------------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEee
Q 045449          678 -----------------------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISD  716 (823)
Q Consensus       678 -----------------------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~D  716 (823)
                                                               ++.|++.+|+|+|+.+|+||||||+||+++.++.+||+|
T Consensus       101 ~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH~~~ivH~Dikp~NIli~~~~~~kl~D  180 (323)
T 3qup_A          101 GRLPIPMVILPFMKHGDLHAFLLASRIGENPFNLPLQTLVRFMVDIACGMEYLSSRNFIHRDLAARNCMLAEDMTVCVAD  180 (323)
T ss_dssp             ----CEEEEEECCTTCBHHHHHHHHHC---CCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECTTSCEEECC
T ss_pred             cCCCccEEEEEeccCCcHHHHHHhhhccccccccCHHHHHHHHHHHHHHHHHHHcCCcccCCCCcceEEEcCCCCEEEee
Confidence                                                     356888999999999999999999999999999999999


Q ss_pred             cccccccCCCCccccccccccCCCcCcccccCCCccccccceehhhhhhccccC-CCCCcCCCc
Q 045449          717 FGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKET-RSMTVGETC  779 (823)
Q Consensus       717 fGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~-~~~~~~~~~  779 (823)
                      ||+|+...............+|+.|+|||++.+..++.++||||+||+++++++ |..||.+..
T Consensus       181 fg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~  244 (323)
T 3qup_A          181 FGLSRKIYSGDYYRQGCASKLPVKWLALESLADNLYTVHSDVWAFGVTMWEIMTRGQTPYAGIE  244 (323)
T ss_dssp             CCC-----------------CCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCC
T ss_pred             ccccccccccccccccccccCcccccCchhhcCCCCCCccchhhHHHHHHHHHhCCCCCccccC
Confidence            999987654443333344567889999999998899999999999999999999 888887643

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens}

Probab=99.88  E-value=2e-24  Score=233.35  Aligned_cols=149  Identities=24%  Similarity=0.372  Sum_probs=126.4

Q ss_pred             hccCCccceeeccC------------CeEEEEEEehHhhH------HHHHHHHHHHHHHhhcchhhHHH-----------
Q 045449          627 TDRFSENNLIGIGN------------GMEVAVKVFHQQYE------RALKSFEDECEVRKRIRHRNLVK-----------  677 (823)
Q Consensus       627 t~~f~~~~~lg~g~------------~~~vavK~~~~~~~------~~~~~~~~E~~~l~~l~h~niv~-----------  677 (823)
                      .++|...+.||.|+            +..||||++.....      ...+.+.+|++++++++||||++           
T Consensus        10 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~   89 (326)
T 2y0a_A           10 DDYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENKTDV   89 (326)
T ss_dssp             HHHEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEBCCSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEE
T ss_pred             ccceEeceEEeeCCCeEEEEEEECCCCcEEEEEEEEccccccccchhhHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEE
Confidence            35677888899886            66799999864321      13467999999999999999998           


Q ss_pred             -----------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCC----cEEEeecccccccC
Q 045449          678 -----------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDM----VAHISDFGIAKLLS  724 (823)
Q Consensus       678 -----------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~----~~kl~DfGla~~~~  724 (823)
                                                   ++.|++.+|+|+|+.+|+||||||+||+++.++    .+||+|||+++...
T Consensus        90 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~al~~lH~~~ivH~Dlkp~NIll~~~~~~~~~~kl~Dfg~a~~~~  169 (326)
T 2y0a_A           90 ILILELVAGGELFDFLAEKESLTEEEATEFLKQILNGVYYLHSLQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKID  169 (326)
T ss_dssp             EEEEECCCSCBHHHHHTTSSCCBHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESCSSSSSCCEEECCCTTCEECC
T ss_pred             EEEEEcCCCCCHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHCCeEcCCCCHHHEEEecCCCCCCCEEEEECCCCeECC
Confidence                                         467899999999999999999999999998877    89999999998765


Q ss_pred             CCCccccccccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCC
Q 045449          725 GEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       725 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      ....   .....||+.|+|||++.+..++.++||||+||++|++++|..||.+.
T Consensus       170 ~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~  220 (326)
T 2y0a_A          170 FGNE---FKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGD  220 (326)
T ss_dssp             TTSC---CCCCCSCTTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCS
T ss_pred             CCCc---cccccCCcCcCCceeecCCCCCcHHHHHHHHHHHHHHHHCcCCCCCC
Confidence            3322   23457999999999999889999999999999999999999999654

>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*

Probab=99.88  E-value=6.4e-25  Score=237.75  Aligned_cols=149  Identities=22%  Similarity=0.227  Sum_probs=124.5

Q ss_pred             ccCCccceeeccC------------CeEEEEEEehHhhHHHHHHHHHHHHHHhhc-chhhHHH-----------------
Q 045449          628 DRFSENNLIGIGN------------GMEVAVKVFHQQYERALKSFEDECEVRKRI-RHRNLVK-----------------  677 (823)
Q Consensus       628 ~~f~~~~~lg~g~------------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~-----------------  677 (823)
                      ++|...+.||.|+            +..||||++.....  .+.+.+|+++++++ +||||++                 
T Consensus         9 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~~~~lv~e~   86 (330)
T 2izr_A            9 PNFRVGKKIGCGNFGELRLGKNLYTNEYVAIKLEPMKSR--APQLHLEYRFYKQLGSGDGIPQVYYFGPCGKYNAMVLEL   86 (330)
T ss_dssp             TTEEEEEECCC-CTTSEEEEEETTTTEEEEEEEEETTCS--SCCHHHHHHHHHHHCSCTTSCCEEEEEEETTEEEEEEEC
T ss_pred             CCeEEEEEeeccCCceEEEEEECCCCcEEEEEEeccccc--hHHHHHHHHHHHHhhCCCCCCEEEEEEecCCccEEEEEe
Confidence            5677777788775            67799999865432  24688999999999 9999997                 


Q ss_pred             -----------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCc-----EEEeecccccccCCCCcc
Q 045449          678 -----------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMV-----AHISDFGIAKLLSGEDQL  729 (823)
Q Consensus       678 -----------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~-----~kl~DfGla~~~~~~~~~  729 (823)
                                             ++.|++.+|+|+|+.+|+||||||+|||++.++.     +||+|||+|+........
T Consensus        87 ~~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~iiHrDlkp~Nill~~~~~~~~~~~kl~DFg~a~~~~~~~~~  166 (330)
T 2izr_A           87 LGPSLEDLFDLCDRTFSLKTVLMIAIQLISRMEYVHSKNLIYRDVKPENFLIGRPGNKTQQVIHIIDFALAKEYIDPETK  166 (330)
T ss_dssp             CCCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECCGGGTCTTSEEECCCTTCEESBCTTTC
T ss_pred             CCCCHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHeeeccCCCCCCceEEEEEcccceeeecCCCC
Confidence                                   4678999999999999999999999999998887     999999999876443221


Q ss_pred             c-----cccccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCC
Q 045449          730 S-----KQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       730 ~-----~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      .     ......||+.|+|||++.+..++.++|||||||++|++++|..||.+.
T Consensus       167 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~Pf~~~  220 (330)
T 2izr_A          167 KHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGL  220 (330)
T ss_dssp             CBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTTTC
T ss_pred             ccccccccCCcCCCccccChHHHcCCCCCchhHHHHHHHHHHHHhcCCCCcccc
Confidence            1     124567999999999999999999999999999999999999999764

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.88  E-value=1.8e-22  Score=215.91  Aligned_cols=212  Identities=21%  Similarity=0.375  Sum_probs=130.0

Q ss_pred             chhhhhccccccccCCccccccCCCCCcEEEccCCcccccCCcccccCCCCccEEEeeccccccccCccccCCCCCCeEE
Q 045449          204 PYLARLALATNNLVGVVPVTIFNMSALKEISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSITNSSKLSDLE  283 (823)
Q Consensus       204 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~lp~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  283 (823)
                      ..+..+.+..+.++..+  .+.++++|++|++++|.++ .+| .+. .+++|++|+|++|++++..+  +..+++|++|+
T Consensus        19 ~~~~~~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~-~l~-~~~-~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~   91 (308)
T 1h6u_A           19 ANAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVT-TIE-GVQ-YLNNLIGLELKDNQITDLAP--LKNLTKITELE   91 (308)
T ss_dssp             HHHHHHHTTCSSTTSEE--CHHHHHTCCEEECTTSCCC-CCT-TGG-GCTTCCEEECCSSCCCCCGG--GTTCCSCCEEE
T ss_pred             HHHHHHHhCCCCcCcee--cHHHcCCcCEEEeeCCCcc-Cch-hhh-ccCCCCEEEccCCcCCCChh--HccCCCCCEEE
Confidence            34455566666666543  3456778888888888887 565 333 37888888888888875444  77888888888


Q ss_pred             eecccccccCCCccCCCcccCcccccCccccCCCCcccccccccCCCCceEEEeecCCCCccCCccccccccccceEEec
Q 045449          284 LGENLFSGFIPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGILPKSIGNFSLSLETILMA  363 (823)
Q Consensus       284 Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~  363 (823)
                      |++|++++.  +.+..+++|++|++++|.+++.       ..+..+++|+.|++++|.+++..+  +..+ ++|++|+++
T Consensus        92 L~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~-------~~l~~l~~L~~L~l~~n~l~~~~~--l~~l-~~L~~L~l~  159 (308)
T 1h6u_A           92 LSGNPLKNV--SAIAGLQSIKTLDLTSTQITDV-------TPLAGLSNLQVLYLDLNQITNISP--LAGL-TNLQYLSIG  159 (308)
T ss_dssp             CCSCCCSCC--GGGTTCTTCCEEECTTSCCCCC-------GGGTTCTTCCEEECCSSCCCCCGG--GGGC-TTCCEEECC
T ss_pred             ccCCcCCCc--hhhcCCCCCCEEECCCCCCCCc-------hhhcCCCCCCEEECCCCccCcCcc--ccCC-CCccEEEcc
Confidence            888888764  3577777777777777777764       136666777777777776665432  4444 455555555


Q ss_pred             CCcceeccCccccCcccccEEEcccCcCCCCchhcccccCCCCEEEccCCCCCCcchHhhhcCCCCCEEEcccCcCc
Q 045449          364 NCSISGNIPQVVGNLSNLLVLELGGNNLTGPIPVTFSQLQTLQAFDLTRNKLAGPITDELCHLARLHSLVLQGNKFS  440 (823)
Q Consensus       364 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~  440 (823)
                      +|++++..+  +..+++|+.|++++|++++..+  +..+++|++|+|++|++++..+  +..+++|+.|+|++|.++
T Consensus       160 ~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~  230 (308)
T 1h6u_A          160 NAQVSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTIT  230 (308)
T ss_dssp             SSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEE
T ss_pred             CCcCCCChh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeee
Confidence            555554322  4555555555555555553322  4455555555555555554332  445555555555555554

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*

Probab=99.88  E-value=1.6e-24  Score=234.90  Aligned_cols=152  Identities=24%  Similarity=0.310  Sum_probs=126.7

Q ss_pred             hccCCccceeeccC-----------------CeEEEEEEehHhh-HHHHHHHHHHHHHHhhc-chhhHHH----------
Q 045449          627 TDRFSENNLIGIGN-----------------GMEVAVKVFHQQY-ERALKSFEDECEVRKRI-RHRNLVK----------  677 (823)
Q Consensus       627 t~~f~~~~~lg~g~-----------------~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l-~h~niv~----------  677 (823)
                      .++|...+.||.|+                 ...||||++.... ....+.+.+|+++++++ +||||++          
T Consensus        45 ~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~  124 (333)
T 2i1m_A           45 RNNLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKIMSHLGQHENIVNLLGACTHGGP  124 (333)
T ss_dssp             TTSEEEEEEEEECSSEEEEEEEETTCSSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSS
T ss_pred             HHHceeeeEeccCCCcceEEEEecCCCcccchhHHHHHhcccccChHHHHHHHHHHHHHHhhcCCCCeeeEEEEEecCCc
Confidence            46788889999986                 1259999987543 34557899999999999 8999998          


Q ss_pred             --------------------------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEE
Q 045449          678 --------------------------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAH  713 (823)
Q Consensus       678 --------------------------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~k  713 (823)
                                                                  ++.|++.+|+|+|+.+|+||||||+||+++.++.+|
T Consensus       125 ~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dlkp~NIl~~~~~~~k  204 (333)
T 2i1m_A          125 VLVITEYCCYGDLLNFLRRKSRVLETDPAFAIANSTASTRDLLHFSSQVAQGMAFLASKNCIHRDVAARNVLLTNGHVAK  204 (333)
T ss_dssp             CEEEEECCTTEEHHHHHHHHHHHHSCC-------CCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGCEEEGGGEEE
T ss_pred             eEEEEecCCCCcHHHHHHHhcccccccccccccccccCHHHHHHHHHHHHHHHHHHhcCCcccCCcccceEEECCCCeEE
Confidence                                                        124788899999999999999999999999999999


Q ss_pred             EeecccccccCCCCccccccccccCCCcCcccccCCCccccccceehhhhhhccccC-CCCCcCCC
Q 045449          714 ISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKET-RSMTVGET  778 (823)
Q Consensus       714 l~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~-~~~~~~~~  778 (823)
                      |+|||+++...............||+.|+|||++.+..++.++|||||||+++++++ |..||.+.
T Consensus       205 l~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~  270 (333)
T 2i1m_A          205 IGDFGLARDIMNDSNYIVKGNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGLNPYPGI  270 (333)
T ss_dssp             BCCCGGGCCGGGCTTSEECSSCEECGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTC
T ss_pred             ECccccccccccccceeecCCCCCCccccCHHHhccCCCChHHHHHHHHHHHHHHHcCCCCCCccc
Confidence            999999987644333223344567889999999988899999999999999999998 88888764

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ...

Probab=99.88  E-value=1.6e-24  Score=230.59  Aligned_cols=151  Identities=29%  Similarity=0.393  Sum_probs=122.2

Q ss_pred             ccCCccceeeccC----------------CeEEEEEEehHhhHHHHHHHHHHHHHHhhcchhhHHH--------------
Q 045449          628 DRFSENNLIGIGN----------------GMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVK--------------  677 (823)
Q Consensus       628 ~~f~~~~~lg~g~----------------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~--------------  677 (823)
                      ++|...+.||.|+                +..||||++........+.|.+|++++++++||||++              
T Consensus        10 ~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~   89 (295)
T 3ugc_A           10 RHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLK   89 (295)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEECTTCSSCCEEEEEEEESCCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECHHHHTSCE
T ss_pred             HHhhhhheeeccCCEEEEEEEEecccCCCCcEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCCCceE
Confidence            4566667777764                4679999998766677788999999999999999997              


Q ss_pred             -----------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCc
Q 045449          678 -----------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQ  728 (823)
Q Consensus       678 -----------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~  728 (823)
                                                   ++.|++.+|+|+|+.+|+||||||+||+++.++.+||+|||+++.......
T Consensus        90 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~  169 (295)
T 3ugc_A           90 LIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGTKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKE  169 (295)
T ss_dssp             EEEECCTTCBHHHHHHHCGGGCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEEETTEEEECCCCSCC-------
T ss_pred             EEEEeCCCCCHHHHHHhcccccCHHHHHHHHHHHHHHHHHHhcCCcccCCCCHhhEEEcCCCeEEEccCcccccccCCcc
Confidence                                         356889999999999999999999999999999999999999987654322


Q ss_pred             c-ccccccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCC
Q 045449          729 L-SKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       729 ~-~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      . .......+|..|+|||++.+..++.++|||||||+++++++|..|+...
T Consensus       170 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~~~~~~  220 (295)
T 3ugc_A          170 FFKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSP  220 (295)
T ss_dssp             ------CTTCGGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTTCTTCSH
T ss_pred             eeeeccCCCCccceeCcHHhcCCCCChHHHHHHHHHHHHHHHhcccccCCC
Confidence            1 1223345778899999999889999999999999999999998887654

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*

Probab=99.88  E-value=1.4e-24  Score=234.48  Aligned_cols=152  Identities=21%  Similarity=0.302  Sum_probs=122.2

Q ss_pred             ccCCccceeeccC------------Ce----EEEEEEehHhh-HHHHHHHHHHHHHHhhcchhhHHH-------------
Q 045449          628 DRFSENNLIGIGN------------GM----EVAVKVFHQQY-ERALKSFEDECEVRKRIRHRNLVK-------------  677 (823)
Q Consensus       628 ~~f~~~~~lg~g~------------~~----~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~-------------  677 (823)
                      ++|...+.||.|+            +.    .||+|++.... ....+.+.+|+.++++++||||++             
T Consensus        13 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~v   92 (325)
T 3kex_A           13 TELRKLKVLGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKSGRQSFQAVTDHMLAIGSLDHAHIVRLLGLCPGSSLQLV   92 (325)
T ss_dssp             TTEEEEEEEECCSSCEEEEEEECCTTCSCCEEEEEEEECCTTSCSCBCSCCHHHHHHHTCCCTTBCCEEEEECBSSEEEE
T ss_pred             hHceeeeeeeecCCceEEEEEEcCCCceEEEEEEEEeccccccHHHHHHHHHHHHHHhcCCCCCcCeEEEEEcCCccEEE
Confidence            4566777888876            12    27888775332 222356789999999999999998             


Q ss_pred             ---------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccc
Q 045449          678 ---------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLS  730 (823)
Q Consensus       678 ---------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~  730 (823)
                                                 ++.|++.+|+|+|+.+|+||||||+|||++.++.+||+|||+++.........
T Consensus        93 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dikp~Nil~~~~~~~kl~Dfg~a~~~~~~~~~~  172 (325)
T 3kex_A           93 TQYLPLGSLLDHVRQHRGALGPQLLLNWGVQIAKGMYYLEEHGMVHRNLAARNVLLKSPSQVQVADFGVADLLPPDDKQL  172 (325)
T ss_dssp             EECCTTCBSHHHHHSSGGGSCTTHHHHHHHHHHHHHHHHHHTTCCCSCCSSTTEEESSSSCEEECSCSGGGGSCCCTTCC
T ss_pred             EEeCCCCCHHHHHHHccccCCHHHHHHHHHHHHHHHHHHHhCCCCCCccchheEEECCCCeEEECCCCcccccCcccccc
Confidence                                       35789999999999999999999999999999999999999999876544433


Q ss_pred             cccccccCCCcCcccccCCCccccccceehhhhhhccccC-CCCCcCCCc
Q 045449          731 KQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKET-RSMTVGETC  779 (823)
Q Consensus       731 ~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~-~~~~~~~~~  779 (823)
                      ......||+.|+|||++.++.++.++||||+||++|++++ |..||.+..
T Consensus       173 ~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~  222 (325)
T 3kex_A          173 LYSEAKTPIKWMALESIHFGKYTHQSDVWSYGVTVWELMTFGAEPYAGLR  222 (325)
T ss_dssp             C-----CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSC
T ss_pred             cccCCCCcccccChHHhccCCCChhhHhHHhHHHHHHHHhCCCCCccccC
Confidence            3445678889999999998899999999999999999999 999997643

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A

Probab=99.88  E-value=4.4e-24  Score=235.59  Aligned_cols=146  Identities=15%  Similarity=0.248  Sum_probs=119.0

Q ss_pred             hccCCccceeeccC------------CeEEEEEEehHh---hHHHHHHHHHHH---HHHhhcchhhHHHH----------
Q 045449          627 TDRFSENNLIGIGN------------GMEVAVKVFHQQ---YERALKSFEDEC---EVRKRIRHRNLVKI----------  678 (823)
Q Consensus       627 t~~f~~~~~lg~g~------------~~~vavK~~~~~---~~~~~~~~~~E~---~~l~~l~h~niv~~----------  678 (823)
                      .++|...+.||.|+            |..||||++...   .....+.|.+|+   +.+++++|||||++          
T Consensus        72 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~hpniv~~~~~~~~~~~~  151 (377)
T 3byv_A           72 PRTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDL  151 (377)
T ss_dssp             CEEEEEEEEEEEETTEEEEEEEC-CCCCEEEEEEEEECC-CCTTHHHHHHHHHHGGGGSTTCCSHHHHHHHHCBCCCSEE
T ss_pred             CceEEEcceeecCCCEEEEEEEECCCCcEEEEEEEeeccccchHHHHHHHHHHHHHHhccccCCHHHHHHHhhhhhhhhh
Confidence            35677778899885            667999998632   234557899999   55666689999752          


Q ss_pred             ------------------------------------------------------------HHHHHHHhhhcCCCCEEecc
Q 045449          679 ------------------------------------------------------------ISSSLEYLHFGHSIPIIHCD  698 (823)
Q Consensus       679 ------------------------------------------------------------~~~~l~~L~~~h~~~ivHrd  698 (823)
                                                                                  +.|++.+|+|+|+.+|+|||
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~i~~~~lv~E~~~g~L~~~l~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrD  231 (377)
T 3byv_A          152 VKDPQKKKMIRVRLDERDMWVLSRFFLYPRMQSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHHYGLVHTY  231 (377)
T ss_dssp             EECTTSCSEEEC------CEEESEEEEEECCSEEHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHHHHHHHHHHTTEECSC
T ss_pred             hhccCCccccccccCCCceEEEEEEEEEeccCCCHHHHHHhccccccccccccHHHHHHHHHHHHHHHHHHHhCCeecCC
Confidence                                                                        35778899999999999999


Q ss_pred             CCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccCCC-----------ccccccceehhhhhhcc
Q 045449          699 LKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKG-----------RVSTRGDVCSFGIISGG  767 (823)
Q Consensus       699 lk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-----------~~~~~~Dv~S~Gvv~~~  767 (823)
                      |||+|||++.++.+||+|||+|+....     .....+| +.|+|||++.+.           .++.++|||||||++|+
T Consensus       232 ikp~NIll~~~~~~kL~DFG~a~~~~~-----~~~~~~g-~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DvwSlG~il~e  305 (377)
T 3byv_A          232 LRPVDIVLDQRGGVFLTGFEHLVRDGA-----RVVSSVS-RGFEPPELEARRATISYHRDRRTLMTFSFDAWALGLVIYW  305 (377)
T ss_dssp             CCGGGEEECTTCCEEECCGGGCEETTC-----EEECCCC-TTCCCHHHHHHHTSTHHHHCCEEECCHHHHHHHHHHHHHH
T ss_pred             CCHHHEEEcCCCCEEEEechhheecCC-----cccCCCC-cCccChhhhcccccccccccccccCChhhhHHHHHHHHHH
Confidence            999999999999999999999986432     2234567 999999999887           89999999999999999


Q ss_pred             ccCCCCCcCCC
Q 045449          768 KETRSMTVGET  778 (823)
Q Consensus       768 ~~~~~~~~~~~  778 (823)
                      +++|..||.+.
T Consensus       306 lltg~~Pf~~~  316 (377)
T 3byv_A          306 IWCADLPITKD  316 (377)
T ss_dssp             HHHSSCCC---
T ss_pred             HHHCCCCCccc
Confidence            99999999664

>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7

Probab=99.88  E-value=7.5e-24  Score=232.60  Aligned_cols=147  Identities=30%  Similarity=0.372  Sum_probs=122.3

Q ss_pred             hccCCccceeeccC------------CeEEEEEEehHh--hHHHHHHHHHHHHHHhhcchhhHHH---------------
Q 045449          627 TDRFSENNLIGIGN------------GMEVAVKVFHQQ--YERALKSFEDECEVRKRIRHRNLVK---------------  677 (823)
Q Consensus       627 t~~f~~~~~lg~g~------------~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~---------------  677 (823)
                      .++|...+.||.|+            |..||||++...  .....+++.+|++++++++||||++               
T Consensus        24 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~~  103 (367)
T 1cm8_A           24 RAVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLDDFT  103 (367)
T ss_dssp             BSSEEEEEEC------CEEEEEETTTCCEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSSTTTCC
T ss_pred             cceEEEeEEeeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCcCCCCceeeEecCCccccCc
Confidence            35677777788775            677999998543  2445578999999999999999987               


Q ss_pred             -----------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCc
Q 045449          678 -----------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQ  728 (823)
Q Consensus       678 -----------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~  728 (823)
                                                   ++.|++.+|+|+|+.+|+||||||+||+++.++.+||+|||+|+.....  
T Consensus       104 ~~~lv~e~~~~~L~~~~~~~~l~~~~~~~~~~qi~~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~--  181 (367)
T 1cm8_A          104 DFYLVMPFMGTDLGKLMKHEKLGEDRIQFLVYQMLKGLRYIHAAGIIHRDLKPGNLAVNEDCELKILDFGLARQADSE--  181 (367)
T ss_dssp             CCEEEEECCSEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTCEECCSS--
T ss_pred             eEEEEEecCCCCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCccccCcCHHHEEEcCCCCEEEEeeecccccccc--
Confidence                                         3568999999999999999999999999999999999999999875432  


Q ss_pred             cccccccccCCCcCcccccCC-CccccccceehhhhhhccccCCCCCcCCC
Q 045449          729 LSKQTQTLATIGYMAPEYGTK-GRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       729 ~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                         ....+||+.|+|||++.+ ..++.++||||+||+++++++|+.||.+.
T Consensus       182 ---~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~  229 (367)
T 1cm8_A          182 ---MTGYVVTRWYRAPEVILNWMRYTQTVDIWSVGCIMAEMITGKTLFKGS  229 (367)
T ss_dssp             ---CCSSCSCGGGCCTHHHHTTTCCCTTHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             ---cCcCcCCCCcCCHHHHhCCCCCChhhhHHHHHHHHHHHHhCCCCCCCC
Confidence               234678999999998876 67999999999999999999999999764

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A*

Probab=99.88  E-value=4.1e-24  Score=229.99  Aligned_cols=150  Identities=27%  Similarity=0.346  Sum_probs=114.2

Q ss_pred             hccCCccceeeccC------------CeEEEEEEehHhh-HHHHHHHHHHHHHHhhcchhhHHH----------------
Q 045449          627 TDRFSENNLIGIGN------------GMEVAVKVFHQQY-ERALKSFEDECEVRKRIRHRNLVK----------------  677 (823)
Q Consensus       627 t~~f~~~~~lg~g~------------~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~----------------  677 (823)
                      .++|...+.||.|+            |..||||++.... ....+.+.+|++++++++||||++                
T Consensus         4 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e   83 (317)
T 2pmi_A            4 SSQFKQLEKLGNGTYATVYKGLNKTTGVYVALKEVKLDSEEGTPSTAIREISLMKELKHENIVRLYDVIHTENKLTLVFE   83 (317)
T ss_dssp             ---------------CEEEEEECSSSCCEEEEEEEECCSTTCSCHHHHHHHHHHTTCCBTTBCCEEEEECCTTEEEEEEE
T ss_pred             ccceeEeeEECCCCCEEEEEEEECCCCcEEEEEEeecccccccHHHHHHHHHHHHhcCCCCcceEEEEEEECCeEEEEEE
Confidence            34666667777764            6779999986433 223357889999999999999998                


Q ss_pred             -----------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCc
Q 045449          678 -----------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQ  728 (823)
Q Consensus       678 -----------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~  728 (823)
                                                   ++.|++++|+|+|+.+|+||||||+||+++.++.+||+|||+++.......
T Consensus        84 ~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~lH~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~  163 (317)
T 2pmi_A           84 FMDNDLKKYMDSRTVGNTPRGLELNLVKYFQWQLLQGLAFCHENKILHRDLKPQNLLINKRGQLKLGDFGLARAFGIPVN  163 (317)
T ss_dssp             CCCCBHHHHHHHHHSSSCCCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCSSCEETTSCCC
T ss_pred             ecCCCHHHHHHhccccccccCCCHHHHHHHHHHHHHHHHHHHHCCeeeCCCChHHeEEcCCCCEEECcCccceecCCCcc
Confidence                                         245889999999999999999999999999999999999999987643221


Q ss_pred             cccccccccCCCcCcccccCCC-ccccccceehhhhhhccccCCCCCcCCC
Q 045449          729 LSKQTQTLATIGYMAPEYGTKG-RVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       729 ~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                        ......||+.|+|||++.+. .++.++||||+||++|++++|..||.+.
T Consensus       164 --~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~  212 (317)
T 2pmi_A          164 --TFSSEVVTLWYRAPDVLMGSRTYSTSIDIWSCGCILAEMITGKPLFPGT  212 (317)
T ss_dssp             --CCCCCCSCCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred             --cCCCCcccccccCchHhhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence              22345789999999998764 6899999999999999999999999764

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}

Probab=99.88  E-value=5.4e-24  Score=228.04  Aligned_cols=150  Identities=30%  Similarity=0.368  Sum_probs=122.9

Q ss_pred             HhccCCccceeeccC------------CeEEEEEEehHhh-----HHHHHHHHHHHHHHhhcc---hhhHHH--------
Q 045449          626 ATDRFSENNLIGIGN------------GMEVAVKVFHQQY-----ERALKSFEDECEVRKRIR---HRNLVK--------  677 (823)
Q Consensus       626 at~~f~~~~~lg~g~------------~~~vavK~~~~~~-----~~~~~~~~~E~~~l~~l~---h~niv~--------  677 (823)
                      .+++|...+.||.|+            ++.||||++....     ......+.+|++++++++   ||||++        
T Consensus         7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~niv~~~~~~~~~   86 (308)
T 3g33_A            7 ATSRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGGGGGGGLPISTVREVALLRRLEAFEHPNVVRLMDVCATS   86 (308)
T ss_dssp             ---CCEEEEEECCSSSCCEEEEECTTTCCEEEEEEEEEECCCTTSSCCCHHHHHHHHHHHHHHHHCCTTBCCEEEEEEEC
T ss_pred             cccceEEEEEEecCCCeEEEEEEECCCCcEEEEEEEecccccccccccchhHHHHHHHHHHHhhcCCCCeEEeeeeeecc
Confidence            367899899999886            5679999986322     111245667887777775   999997        


Q ss_pred             --------------------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeeccc
Q 045449          678 --------------------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGI  719 (823)
Q Consensus       678 --------------------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGl  719 (823)
                                                            ++.|++.+|+|+|+.+|+||||||+||+++.++.+||+|||+
T Consensus        87 ~~~~~~~~~lv~e~~~~~L~~~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~~ivH~Dlkp~Nil~~~~~~~kl~Dfg~  166 (308)
T 3g33_A           87 RTDREIKVTLVFEHVDQDLRTYLDKAPPPGLPAETIKDLMRQFLRGLDFLHANCIVHRDLKPENILVTSGGTVKLADFGL  166 (308)
T ss_dssp             CSSSEEEEEEEEECCCCBHHHHHHTCCTTCSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCTTTEEECTTSCEEECSCSC
T ss_pred             CCCCceeEEEEehhhhcCHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEEcCCCCEEEeeCcc
Confidence                                                  367899999999999999999999999999999999999999


Q ss_pred             ccccCCCCccccccccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCC
Q 045449          720 AKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       720 a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      |+......   ......||+.|+|||++.+..++.++||||+||++|++++|..||.+.
T Consensus       167 a~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~  222 (308)
T 3g33_A          167 ARIYSYQM---ALTPVVVTLWYRAPEVLLQSTYATPVDMWSVGCIFAEMFRRKPLFCGN  222 (308)
T ss_dssp             TTTSTTCC---CSGGGGCCCSSCCHHHHHTSCCCSTHHHHHHHHHHHHTTTSSCSCCCS
T ss_pred             ccccCCCc---ccCCccccccccCchHHcCCCCCchHHHHHHHHHHHHHHhCCCCCCCC
Confidence            98764332   234567999999999999999999999999999999999999999664

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens}

Probab=99.88  E-value=1.5e-24  Score=234.47  Aligned_cols=152  Identities=24%  Similarity=0.302  Sum_probs=117.2

Q ss_pred             ccCCccceeeccC------------Ce----EEEEEEehHhh-HHHHHHHHHHHHHHhhcchhhHHH-------------
Q 045449          628 DRFSENNLIGIGN------------GM----EVAVKVFHQQY-ERALKSFEDECEVRKRIRHRNLVK-------------  677 (823)
Q Consensus       628 ~~f~~~~~lg~g~------------~~----~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~-------------  677 (823)
                      ++|...+.||.|+            +.    .||+|.+.... ....+.+.+|+.++++++||||++             
T Consensus        15 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~iK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~v   94 (327)
T 3lzb_A           15 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTSTVQLI   94 (327)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEECCTTCSCCEEEEEEEECCCSSCCCHHHHHHHHHHHTTCCBTTBCCCCEEEESSSEEEE
T ss_pred             hHceEEEEeeeCCCeEEEEEEEcCCCceEEEEEEEEeeccccCHHHHHHHHHHHHHHHhCCCCCeeEEEEEEecCCceEE
Confidence            5678888899886            11    25777775322 234468999999999999999998             


Q ss_pred             ---------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccc
Q 045449          678 ---------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLS  730 (823)
Q Consensus       678 ---------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~  730 (823)
                                                 ++.|++.+|+|+|+.+|+||||||+||+++.++.+||+|||+++.........
T Consensus        95 ~~~~~~g~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dikp~NIl~~~~~~~kL~DfG~a~~~~~~~~~~  174 (327)
T 3lzb_A           95 TQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEY  174 (327)
T ss_dssp             ECCCSSCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEEETTEEEECCTTC-----------
T ss_pred             EEecCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhhCCCcCCCCCHHHEEEcCCCCEEEccCcceeEccCccccc
Confidence                                       35788999999999999999999999999999999999999998765443333


Q ss_pred             cccccccCCCcCcccccCCCccccccceehhhhhhccccC-CCCCcCCCc
Q 045449          731 KQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKET-RSMTVGETC  779 (823)
Q Consensus       731 ~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~-~~~~~~~~~  779 (823)
                      ......||+.|+|||++.+..++.++||||+||++|++++ |..||....
T Consensus       175 ~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~  224 (327)
T 3lzb_A          175 HAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIP  224 (327)
T ss_dssp             -----CCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCC
T ss_pred             cccCCCccccccCHHHHcCCCCChHHHHHHHHHHHHHHHHCCCCCCCCCC
Confidence            3344567889999999999999999999999999999999 999997653

>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...

Probab=99.88  E-value=3.8e-24  Score=234.92  Aligned_cols=158  Identities=26%  Similarity=0.335  Sum_probs=129.8

Q ss_pred             HHHHHHhccCCccceeeccC------------CeEEEEEEehHhh-HHHHHHHHHHHHHHhhcchhhHHH----------
Q 045449          621 HELLRATDRFSENNLIGIGN------------GMEVAVKVFHQQY-ERALKSFEDECEVRKRIRHRNLVK----------  677 (823)
Q Consensus       621 ~~l~~at~~f~~~~~lg~g~------------~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~----------  677 (823)
                      .++....++|...+.||.|+            +..||||++.... ....+.+.+|++++.+++||||++          
T Consensus        20 g~~~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~   99 (364)
T 3qyz_A           20 GQVFDVGPRYTNLSYIGEGAYGMVCSAYDNLNKVRVAIKKISPFEHQTYCQRTLREIKILLRFRHENIIGINDIIRAPTI   99 (364)
T ss_dssp             -CBCCCTTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCTTCHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSST
T ss_pred             cEeccccccEEEEEEeecCCCeEEEEEEECCCCeEEEEEEeccccCcHHHHHHHHHHHHHHhcCCCCCccceeEEecCCc
Confidence            44444567899999999986            5679999986432 445578999999999999999986          


Q ss_pred             ---------------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccC
Q 045449          678 ---------------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLS  724 (823)
Q Consensus       678 ---------------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~  724 (823)
                                                       ++.|++.+|+|+|+.+|+||||||+||+++.++.+||+|||+++...
T Consensus       100 ~~~~~~~iv~e~~~~~L~~~l~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~  179 (364)
T 3qyz_A          100 EQMKDVYIVQDLMETDLYKLLKTQHLSNDHICYFLYQILRGLKYIHSANVLHRDLKPSNLLLNTTCDLKICDFGLARVAD  179 (364)
T ss_dssp             TTCCCEEEEEECCSEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTCEECC
T ss_pred             cccceEEEEEcccCcCHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCChHhEEECCCCCEEEEeCcceEecC
Confidence                                             36789999999999999999999999999999999999999998764


Q ss_pred             CCCccc-cccccccCCCcCcccccCC-CccccccceehhhhhhccccCCCCCcCCC
Q 045449          725 GEDQLS-KQTQTLATIGYMAPEYGTK-GRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       725 ~~~~~~-~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      ...... .....+||+.|+|||++.+ ..++.++||||+||+++++++|..||.+.
T Consensus       180 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~  235 (364)
T 3qyz_A          180 PDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGK  235 (364)
T ss_dssp             GGGCBCCTTCCCCSCGGGCCHHHHHTBCSCSTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             CCCCccccccccccccCCCCCHHhcCCCCCCcchhHHHHHHHHHHHHHCCCCCCCC
Confidence            332211 1234589999999998654 45899999999999999999999999664

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*

Probab=99.88  E-value=6.1e-24  Score=228.10  Aligned_cols=153  Identities=24%  Similarity=0.311  Sum_probs=127.6

Q ss_pred             hccCCccceeeccC-----------------CeEEEEEEehHhh-HHHHHHHHHHHHHHhhcchhhHHH-----------
Q 045449          627 TDRFSENNLIGIGN-----------------GMEVAVKVFHQQY-ERALKSFEDECEVRKRIRHRNLVK-----------  677 (823)
Q Consensus       627 t~~f~~~~~lg~g~-----------------~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~-----------  677 (823)
                      .++|...+.||.|+                 +..||||++.... ....+.+.+|++++++++||||++           
T Consensus        22 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~  101 (314)
T 2ivs_A           22 RKNLVLGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPSELRDLLSEFNVLKQVNHPHVIKLYGACSQDGPL  101 (314)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEEETGGGCSSEEEEEEEECCTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSC
T ss_pred             hhheeeeeeecccCCeeEEEEEEeccCcccCcceEEEEeccCCCCHHHHHHHHHHHHHHhhCCCCceeeEEEEEecCCce
Confidence            45677777888775                 2569999997543 455678999999999999999997           


Q ss_pred             -----------------------------------------------------HHHHHHHHhhhcCCCCEEeccCCCCCE
Q 045449          678 -----------------------------------------------------IISSSLEYLHFGHSIPIIHCDLKPSNV  704 (823)
Q Consensus       678 -----------------------------------------------------~~~~~l~~L~~~h~~~ivHrdlk~~Ni  704 (823)
                                                                           ++.|++++|+|+|+.+|+||||||+||
T Consensus       102 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~dikp~NI  181 (314)
T 2ivs_A          102 LLIVEYAKYGSLRGFLRESRKVGPGYLGSGGSRNSSSLDHPDERALTMGDLISFAWQISQGMQYLAEMKLVHRDLAARNI  181 (314)
T ss_dssp             EEEEECCTTCBHHHHHHHTTTSTTEEC----------------CEECHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGE
T ss_pred             EEEEeecCCCCHHHHHHHHhhccCCcccccccccccccccccccCcCHHHHHHHHHHHHHHHHHHHHCCCcccccchheE
Confidence                                                                 134788899999999999999999999


Q ss_pred             EeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccCCCccccccceehhhhhhccccC-CCCCcCCCc
Q 045449          705 LLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKET-RSMTVGETC  779 (823)
Q Consensus       705 Ll~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~-~~~~~~~~~  779 (823)
                      +++.++.+||+|||+++...............+|+.|+|||++.+..++.++||||+||+++++++ |..||.+..
T Consensus       182 li~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~  257 (314)
T 2ivs_A          182 LVAEGRKMKISDFGLSRDVYEEDSYVKRSQGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIVTLGGNPYPGIP  257 (314)
T ss_dssp             EEETTTEEEECCCTTCEECTTTSCEECSSCCCSCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCC
T ss_pred             EEcCCCCEEEccccccccccccccceeccCCCCcccccChhhhcCCCcCchhhHHHHHHHHHHHHhCCCCCCCCCC
Confidence            999999999999999987655443333344567899999999988889999999999999999999 999987653

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*

Probab=99.88  E-value=8e-24  Score=225.74  Aligned_cols=142  Identities=30%  Similarity=0.404  Sum_probs=115.7

Q ss_pred             hccCCccceeeccC----------CeEEEEEEehHhhHHHHHHHHHHHHHHhh--cchhhHHH-----------------
Q 045449          627 TDRFSENNLIGIGN----------GMEVAVKVFHQQYERALKSFEDECEVRKR--IRHRNLVK-----------------  677 (823)
Q Consensus       627 t~~f~~~~~lg~g~----------~~~vavK~~~~~~~~~~~~~~~E~~~l~~--l~h~niv~-----------------  677 (823)
                      .++|...+.||.|+          +..||||++.....   +.+.+|.+++..  ++||||++                 
T Consensus         7 ~~~y~~~~~lg~G~~g~V~~~~~~~~~vavK~~~~~~~---~~~~~e~~~~~~~~l~h~niv~~~~~~~~~~~~~~~~~l   83 (301)
T 3q4u_A            7 ARDITLLECVGKGRYGEVWRGSWQGENVAVKIFSSRDE---KSWFRETELYNTVMLRHENILGFIASDMTSRHSSTQLWL   83 (301)
T ss_dssp             GGGCEEEEEEEECSSEEEEEEEETTEEEEEEEECGGGH---HHHHHHHHHHHHTCCCCTTBCCEEEEEEEEETTEEEEEE
T ss_pred             cCcEEEEEeeccCCCcEEEEEEECCEEEEEEEeccccc---hhhHHHHHHHHHhhccCcCeeeEEEeeccccCCCceeEE
Confidence            46788888999886          67799999976533   456667777666  79999998                 


Q ss_pred             --------------------------HHHHHHHHhhhcC--------CCCEEeccCCCCCEEeCCCCcEEEeeccccccc
Q 045449          678 --------------------------IISSSLEYLHFGH--------SIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLL  723 (823)
Q Consensus       678 --------------------------~~~~~l~~L~~~h--------~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~  723 (823)
                                                ++.|++.+|+|+|        +.+|+||||||+|||++.++.+||+|||+|+..
T Consensus        84 v~e~~~~g~L~~~l~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dlkp~Nill~~~~~~kl~Dfg~a~~~  163 (301)
T 3q4u_A           84 ITHYHEMGSLYDYLQLTTLDTVSCLRIVLSIASGLAHLHIEIFGTQGKPAIAHRDLKSKNILVKKNGQCCIADLGLAVMH  163 (301)
T ss_dssp             EECCCTTCBHHHHHTTCCBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBCEEECSCCCGGGEEECTTSCEEECCCTTCEEE
T ss_pred             ehhhccCCCHHHHHhhcccCHHHHHHHHHHHHHHHHHHHHhhhhccCCCCeecCCCChHhEEEcCCCCEEEeeCCCeeec
Confidence                                      3568888888889        999999999999999999999999999999876


Q ss_pred             CCCCccc--cccccccCCCcCcccccCCC------ccccccceehhhhhhccccCC
Q 045449          724 SGEDQLS--KQTQTLATIGYMAPEYGTKG------RVSTRGDVCSFGIISGGKETR  771 (823)
Q Consensus       724 ~~~~~~~--~~~~~~gt~~y~aPE~~~~~------~~~~~~Dv~S~Gvv~~~~~~~  771 (823)
                      .......  ......||+.|+|||++.+.      .++.++|||||||++|++++|
T Consensus       164 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DvwslG~il~el~tg  219 (301)
T 3q4u_A          164 SQSTNQLDVGNNPRVGTKRYMAPEVLDETIQVDCFDSYKRVDIWAFGLVLWEVARR  219 (301)
T ss_dssp             ETTTTEEECCCCCCCCCGGGCCHHHHTTCCCTTCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             ccccccccccccccccccceeChhhhcCcCCCCcccCCchhhHHHHHHHHHHHHhh
Confidence            5433211  12335799999999998876      567899999999999999999

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}

Probab=99.88  E-value=9.1e-25  Score=234.40  Aligned_cols=146  Identities=23%  Similarity=0.275  Sum_probs=116.9

Q ss_pred             ccCCccceeeccC------------CeEEEEEEehHhh--HHHHHHHHHHHHHHhhc-chhhHHH---------------
Q 045449          628 DRFSENNLIGIGN------------GMEVAVKVFHQQY--ERALKSFEDECEVRKRI-RHRNLVK---------------  677 (823)
Q Consensus       628 ~~f~~~~~lg~g~------------~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l-~h~niv~---------------  677 (823)
                      ++|+..+.||.|+            ++.||||++....  ......+..|+..+.++ +||||++               
T Consensus        57 ~~y~~~~~LG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~~~~~~~h~~iv~l~~~~~~~~~~~lv~  136 (311)
T 3p1a_A           57 QSFQRLSRLGHGSYGEVFKVRSKEDGRLYAVKRSMSPFRGPKDRARKLAEVGSHEKVGQHPCCVRLEQAWEEGGILYLQT  136 (311)
T ss_dssp             HHEEEEEEEEEETTEEEEEEEETTTSCEEEEEEESSSCCSHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred             hheeeeheeccCCCeEEEEEEECCCCeEEEEEEecccccChHHHHHHHHHHHHHHHhcCCCcEEEEEEEEEeCCEEEEEE
Confidence            6788889999986            6679999885422  33334566666666665 8999987               


Q ss_pred             -------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccc
Q 045449          678 -------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQ  732 (823)
Q Consensus       678 -------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~  732 (823)
                                               ++.|++.+|+|+|+.+|+||||||+|||++.++.+||+|||+++......   ..
T Consensus       137 e~~~~~L~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~Dikp~NIll~~~~~~kl~DFG~a~~~~~~~---~~  213 (311)
T 3p1a_A          137 ELCGPSLQQHCEAWGASLPEAQVWGYLRDTLLALAHLHSQGLVHLDVKPANIFLGPRGRCKLGDFGLLVELGTAG---AG  213 (311)
T ss_dssp             ECCCCBHHHHHHHHCSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECGGGCEEECCCTTCEECC--------
T ss_pred             eccCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCEecCCCCHHHEEECCCCCEEEccceeeeecccCC---CC
Confidence                                     46788999999999999999999999999999999999999998764332   22


Q ss_pred             cccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCC
Q 045449          733 TQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGE  777 (823)
Q Consensus       733 ~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~  777 (823)
                      ....||+.|+|||++.+ .++.++|||||||+++++++|..++..
T Consensus       214 ~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~el~~g~~~~~~  257 (311)
T 3p1a_A          214 EVQEGDPRYMAPELLQG-SYGTAADVFSLGLTILEVACNMELPHG  257 (311)
T ss_dssp             -CCCCCGGGCCGGGGGT-CCSTHHHHHHHHHHHHHHHHTCCCCSS
T ss_pred             cccCCCccccCHhHhcC-CCCchhhHHHHHHHHHHHHhCCCCCCC
Confidence            34569999999998875 799999999999999999999766543

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*

Probab=99.88  E-value=4.4e-24  Score=225.56  Aligned_cols=152  Identities=22%  Similarity=0.297  Sum_probs=115.4

Q ss_pred             hccCCccceeeccC---------------CeEEEEEEehHhh-HHHHHHHHHHHHHHhhcchhhHHH-------------
Q 045449          627 TDRFSENNLIGIGN---------------GMEVAVKVFHQQY-ERALKSFEDECEVRKRIRHRNLVK-------------  677 (823)
Q Consensus       627 t~~f~~~~~lg~g~---------------~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~-------------  677 (823)
                      .++|...+.||.|+               +..||||++.... ....+.|.+|+.++++++||||++             
T Consensus        14 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~lv   93 (281)
T 1mp8_A           14 RERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVITENPVWII   93 (281)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTTTSHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSCEEE
T ss_pred             hHHeEEEeEeeecCCeeEEEEEEecCCCCceEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCccceEEEEEccCccEEE
Confidence            35677778888875               2358999987532 455678999999999999999998             


Q ss_pred             ---------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccc
Q 045449          678 ---------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLS  730 (823)
Q Consensus       678 ---------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~  730 (823)
                                                 ++.|++.+|+|+|+.+|+||||||+||+++.++.+||+|||+++....... .
T Consensus        94 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~-~  172 (281)
T 1mp8_A           94 MELCTLGELRSFLQVRKYSLDLASLILYAYQLSTALAYLESKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTY-Y  172 (281)
T ss_dssp             EECCTTEEHHHHHHHTTTTSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEEETTEEEECC--------------
T ss_pred             EecCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCeecccccHHHEEECCCCCEEECccccccccCcccc-c
Confidence                                       356889999999999999999999999999999999999999987644322 1


Q ss_pred             cccccccCCCcCcccccCCCccccccceehhhhhhccccC-CCCCcCCCc
Q 045449          731 KQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKET-RSMTVGETC  779 (823)
Q Consensus       731 ~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~-~~~~~~~~~  779 (823)
                      ......+|+.|+|||++.+..++.++||||+||+++++++ |..||.+..
T Consensus       173 ~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~ell~~g~~pf~~~~  222 (281)
T 1mp8_A          173 KASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVK  222 (281)
T ss_dssp             ------CCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCTTTTCC
T ss_pred             ccccCCCcccccChhhcccCCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence            2233457889999999988899999999999999999986 888987653

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=99.88  E-value=7.9e-24  Score=249.94  Aligned_cols=150  Identities=23%  Similarity=0.189  Sum_probs=127.7

Q ss_pred             hccCCccceeeccC------------CeEEEEEEehHhh---HHHHHHHHHHHHHHhhc-chhhHHH-------------
Q 045449          627 TDRFSENNLIGIGN------------GMEVAVKVFHQQY---ERALKSFEDECEVRKRI-RHRNLVK-------------  677 (823)
Q Consensus       627 t~~f~~~~~lg~g~------------~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l-~h~niv~-------------  677 (823)
                      .++|...+.||+|+            ++.||||++....   ....+.+..|.+++..+ +||+|++             
T Consensus       340 ~~~f~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~l~~~~~~~~~~~l  419 (674)
T 3pfq_A          340 LTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLYF  419 (674)
T ss_dssp             CTTEEEEEESSBTTTBCEEEEEESSSCCEEEEEEEEHHHHHHTTTTHHHHHHHHHHTCTTCCTTBCCEEEECBCSSEEEE
T ss_pred             ccceEEEEEEccCCCEEEEEEEECCCCcEEEEEEEeccccccHHHHHHHHHHHHHHHhccCCCeEEEEEEEEEeCCEEEE
Confidence            46788888999886            5669999997543   22346788999999987 7899887             


Q ss_pred             ---------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccc
Q 045449          678 ---------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLS  730 (823)
Q Consensus       678 ---------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~  730 (823)
                                                 +++|++.+|+|+|+.+|+||||||+|||++.++++||+|||+|+.......  
T Consensus       420 V~E~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~gIiHrDLKp~NILl~~~g~ikL~DFGla~~~~~~~~--  497 (674)
T 3pfq_A          420 VMEYVNGGDLMYHIQQVGRFKEPHAVFYAAEIAIGLFFLQSKGIIYRDLKLDNVMLDSEGHIKIADFGMCKENIWDGV--  497 (674)
T ss_dssp             EEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTSEECCCCCSTTEEECSSSCEEECCCTTCEECCCTTC--
T ss_pred             EEeCcCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeEeccCChhhEEEcCCCcEEEeecceeeccccCCc--
Confidence                                       468999999999999999999999999999999999999999986433222  


Q ss_pred             cccccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCC
Q 045449          731 KQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       731 ~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      .....+||+.|+|||++.+..|+.++|||||||++|||++|..||.+.
T Consensus       498 ~~~~~~GT~~Y~APE~l~~~~~~~~~DvwSlGvilyelltG~~Pf~~~  545 (674)
T 3pfq_A          498 TTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGE  545 (674)
T ss_dssp             CBCCCCSCSSSCCHHHHTCCCBSTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             ccccccCCCcccCHhhhcCCCCCccceEechHHHHHHHHcCCCCCCCC
Confidence            234578999999999999999999999999999999999999999764

>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...

Probab=99.88  E-value=8.8e-24  Score=232.60  Aligned_cols=149  Identities=28%  Similarity=0.317  Sum_probs=118.9

Q ss_pred             hccCCccceeeccC------------CeEEEEEEehHh--hHHHHHHHHHHHHHHhhcchhhHHH---------------
Q 045449          627 TDRFSENNLIGIGN------------GMEVAVKVFHQQ--YERALKSFEDECEVRKRIRHRNLVK---------------  677 (823)
Q Consensus       627 t~~f~~~~~lg~g~------------~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~---------------  677 (823)
                      .++|...+.||.|+            +..||||++...  .....+.+.+|+.++++++||||++               
T Consensus        24 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~  103 (371)
T 2xrw_A           24 LKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEFQ  103 (371)
T ss_dssp             ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSCCSTTTCC
T ss_pred             hhheeEeeeeEecCCEEEEEEEECCCCceEEEEEeccccCChHHHHHHHHHHHHHHhcCCCCccceEEeecccccccccc
Confidence            36788888899886            567999998643  2445578999999999999999986               


Q ss_pred             ----------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCcc
Q 045449          678 ----------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQL  729 (823)
Q Consensus       678 ----------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~  729 (823)
                                                  ++.|++.+|+|+|+.+|+||||||+||+++.++.+||+|||+|+......  
T Consensus       104 ~~~lv~e~~~~~l~~~~~~~~~~~~~~~i~~qi~~al~~lH~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~a~~~~~~~--  181 (371)
T 2xrw_A          104 DVYIVMELMDANLCQVIQMELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSF--  181 (371)
T ss_dssp             EEEEEEECCSEEHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTSCEEECCCCC----------
T ss_pred             ceEEEEEcCCCCHHHHHhhccCHHHHHHHHHHHHHHHHHHHHCCeecccCCHHHEEEcCCCCEEEEEeeccccccccc--
Confidence                                        36789999999999999999999999999999999999999998754322  


Q ss_pred             ccccccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCC
Q 045449          730 SKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       730 ~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                       .....+||+.|+|||++.+..++.++||||+||+++++++|..||.+.
T Consensus       182 -~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~  229 (371)
T 2xrw_A          182 -MMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVLFPGT  229 (371)
T ss_dssp             ---------CTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             -ccCCceecCCccCHHHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCC
Confidence             223467999999999999989999999999999999999999999764

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0

Probab=99.88  E-value=4e-24  Score=224.42  Aligned_cols=148  Identities=26%  Similarity=0.394  Sum_probs=115.9

Q ss_pred             ccCCccceeeccC----------CeEEEEEEehHhhH----HHHHHHHHHHHHHhhcchhhHHH----------------
Q 045449          628 DRFSENNLIGIGN----------GMEVAVKVFHQQYE----RALKSFEDECEVRKRIRHRNLVK----------------  677 (823)
Q Consensus       628 ~~f~~~~~lg~g~----------~~~vavK~~~~~~~----~~~~~~~~E~~~l~~l~h~niv~----------------  677 (823)
                      ++|...+.||.|+          +..||||++.....    ...+.+.+|++++++++||||++                
T Consensus         7 ~~~~~~~~lg~G~~g~V~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   86 (271)
T 3dtc_A            7 AELTLEEIIGIGGFGKVYRAFWIGDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPNIIALRGVCLKEPNLCLVME   86 (271)
T ss_dssp             TSEEEEEEEEEETTEEEEEEEETTEEEEEEEC----------CHHHHHHHHHHHHHCCCTTBCCEEEEECCC--CEEEEE
T ss_pred             hheeeeeeeccCCCeEEEEEEEcCCeEEEEEEecCCcccHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEecCCceEEEEE
Confidence            5677788899886          57799999875432    23468999999999999999998                


Q ss_pred             -----------------------HHHHHHHHhhhcCCCC---EEeccCCCCCEEeCC--------CCcEEEeeccccccc
Q 045449          678 -----------------------IISSSLEYLHFGHSIP---IIHCDLKPSNVLLDE--------DMVAHISDFGIAKLL  723 (823)
Q Consensus       678 -----------------------~~~~~l~~L~~~h~~~---ivHrdlk~~NiLl~~--------~~~~kl~DfGla~~~  723 (823)
                                             ++.|++.+|+|+|+.+   |+||||||+||+++.        ++.+||+|||+++..
T Consensus        87 ~~~~~~L~~~~~~~~~~~~~~~~i~~~l~~~l~~lH~~~~~~i~H~dikp~Nil~~~~~~~~~~~~~~~kl~Dfg~~~~~  166 (271)
T 3dtc_A           87 FARGGPLNRVLSGKRIPPDILVNWAVQIARGMNYLHDEAIVPIIHRDLKSSNILILQKVENGDLSNKILKITDFGLAREW  166 (271)
T ss_dssp             CCTTEEHHHHHTSSCCCHHHHHHHHHHHHHHHHHHHHSSSSCCCCSCCSGGGEEESSCCSSSCCSSCCEEECCCCC----
T ss_pred             cCCCCCHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhCCCCceeecCCchHHEEEecccccccccCcceEEccCCccccc
Confidence                                   3578889999999998   999999999999986        678999999999865


Q ss_pred             CCCCccccccccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCCc
Q 045449          724 SGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGETC  779 (823)
Q Consensus       724 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~~  779 (823)
                      ....    .....||+.|+|||++.+..++.++||||+||+++++++|..||.+..
T Consensus       167 ~~~~----~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~  218 (271)
T 3dtc_A          167 HRTT----KMSAAGAYAWMAPEVIRASMFSKGSDVWSYGVLLWELLTGEVPFRGID  218 (271)
T ss_dssp             -------------CCGGGSCHHHHHHCCCSHHHHHHHHHHHHHHHHHCCCTTTTSC
T ss_pred             cccc----ccCCCCccceeCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCC
Confidence            4332    224579999999999988889999999999999999999999997754

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7

Probab=99.88  E-value=4.2e-24  Score=232.68  Aligned_cols=153  Identities=22%  Similarity=0.323  Sum_probs=125.3

Q ss_pred             hccCCccceeeccC-----------------CeEEEEEEehHhh-HHHHHHHHHHHHHHhhc-chhhHHH----------
Q 045449          627 TDRFSENNLIGIGN-----------------GMEVAVKVFHQQY-ERALKSFEDECEVRKRI-RHRNLVK----------  677 (823)
Q Consensus       627 t~~f~~~~~lg~g~-----------------~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l-~h~niv~----------  677 (823)
                      .++|...+.||.|+                 +..||||++.... ....+.+.+|++++.++ +||||++          
T Consensus        44 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~  123 (344)
T 1rjb_A           44 RENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHENIVNLLGACTLSGP  123 (344)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSS
T ss_pred             HHHceeeeeecCCCCceeEEeeeeccccCCcceEEEEEecccccCHHHHHHHHHHHHHHHhhcCCCCeeeEEEEEeeCCc
Confidence            46788888999886                 2359999997543 33457899999999999 8999997          


Q ss_pred             -----------------------------------------------------HHHHHHHHhhhcCCCCEEeccCCCCCE
Q 045449          678 -----------------------------------------------------IISSSLEYLHFGHSIPIIHCDLKPSNV  704 (823)
Q Consensus       678 -----------------------------------------------------~~~~~l~~L~~~h~~~ivHrdlk~~Ni  704 (823)
                                                                           ++.|++++|+|+|+.+|+||||||+||
T Consensus       124 ~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~Dikp~NI  203 (344)
T 1rjb_A          124 IYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEFKSCVHRDLAARNV  203 (344)
T ss_dssp             CEEEEECCTTCBHHHHHHTTTTCC---------------------CCHHHHHHHHHHHHHHHHHHHHTTEEETTCSGGGE
T ss_pred             cEEEEecCCCCcHHHHHhhccccccccccchhhhcccccccccccCCHHHHHHHHHHHHHHHHHHHhCCcccCCCChhhE
Confidence                                                                 134788899999999999999999999


Q ss_pred             EeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccCCCccccccceehhhhhhccccC-CCCCcCCCc
Q 045449          705 LLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKET-RSMTVGETC  779 (823)
Q Consensus       705 Ll~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~-~~~~~~~~~  779 (823)
                      +++.++.+||+|||+++...............||+.|+|||++.+..++.++|||||||+++++++ |..||.+..
T Consensus       204 ll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~  279 (344)
T 1rjb_A          204 LVTHGKVVKICDFGLARDIMSDSNYVVRGNARLPVKWMAPESLFEGIYTIKSDVWSYGILLWEIFSLGVNPYPGIP  279 (344)
T ss_dssp             EEETTTEEEECCCGGGSCGGGCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCC
T ss_pred             EEcCCCcEEeCCCccCcccccCccceeccCccCccCccCHHHhccCCCChhHhHHHHHHHHHHHHcCCCCCcccCC
Confidence            999999999999999987654433333345568899999999988899999999999999999998 999987653

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A

Probab=99.88  E-value=2.5e-24  Score=228.26  Aligned_cols=149  Identities=26%  Similarity=0.368  Sum_probs=120.4

Q ss_pred             ccCCccceeeccC-----------CeEEEEEEehHhh--HHHHHHHHHHHHHHhhcchhhHHH-----------------
Q 045449          628 DRFSENNLIGIGN-----------GMEVAVKVFHQQY--ERALKSFEDECEVRKRIRHRNLVK-----------------  677 (823)
Q Consensus       628 ~~f~~~~~lg~g~-----------~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~-----------------  677 (823)
                      ++|...+.||.|+           +..||||++....  ....+.+.+|++++++++||||++                 
T Consensus         2 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~   81 (288)
T 1ob3_A            2 EKYHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVIHTKKRLVLVFEH   81 (288)
T ss_dssp             CSEEEEEEEEEETTEEEEEEEETTSCEEEEEEECCSSGGGCCCHHHHHHHHGGGGCCCTTBCCEEEEEECSSCEEEEEEC
T ss_pred             ccchhhhhcccCCCEEEEEEEcCCCCEEEEEEEeccccccccchhHHHHHHHHHhcCCCCEeeeeeEEccCCeEEEEEEe
Confidence            4567777888775           5679999986432  222367889999999999999998                 


Q ss_pred             -----------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccc
Q 045449          678 -----------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQ  734 (823)
Q Consensus       678 -----------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~  734 (823)
                                             ++.|++++|+|+|+.+|+||||||+||+++.++.+||+|||+++.......  ....
T Consensus        82 ~~~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~--~~~~  159 (288)
T 1ob3_A           82 LDQDLKKLLDVCEGGLESVTAKSFLLQLLNGIAYCHDRRVLHRDLKPQNLLINREGELKIADFGLARAFGIPVR--KYTH  159 (288)
T ss_dssp             CSEEHHHHHHTSTTCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTSCEEECCTTHHHHHCC---------
T ss_pred             cCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEEcCCCCEEEeECccccccCcccc--cccc
Confidence                                   367899999999999999999999999999999999999999987643221  2234


Q ss_pred             cccCCCcCcccccCCC-ccccccceehhhhhhccccCCCCCcCCC
Q 045449          735 TLATIGYMAPEYGTKG-RVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       735 ~~gt~~y~aPE~~~~~-~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      ..||+.|+|||++.+. .++.++||||+||+++++++|..||.+.
T Consensus       160 ~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~  204 (288)
T 1ob3_A          160 EIVTLWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMVNGTPLFPGV  204 (288)
T ss_dssp             --CCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred             ccccccccCchheeCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence            5789999999998764 5899999999999999999999999764

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*

Probab=99.88  E-value=1.2e-23  Score=222.40  Aligned_cols=149  Identities=27%  Similarity=0.431  Sum_probs=126.6

Q ss_pred             hccCCccceeeccC------------CeEEEEEEehHhh--HHHHHHHHHHHHHHhhcchhhHHH---------------
Q 045449          627 TDRFSENNLIGIGN------------GMEVAVKVFHQQY--ERALKSFEDECEVRKRIRHRNLVK---------------  677 (823)
Q Consensus       627 t~~f~~~~~lg~g~------------~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~---------------  677 (823)
                      .++|...+.||.|+            +..||||++....  ....+.+.+|++++++++||||++               
T Consensus         5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~   84 (284)
T 3kk8_A            5 SDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLVF   84 (284)
T ss_dssp             TTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             hhhhhhhhhhcCcCCeEEEEEEEcCCCceEEEEEeecccCCHHHHHHHHHHHHHHHHcCCCCcCeEEEEEEcCCEEEEEE
Confidence            46788888898875            6679999986543  445578999999999999999998               


Q ss_pred             -------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCc---EEEeecccccccCCCCcc
Q 045449          678 -------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMV---AHISDFGIAKLLSGEDQL  729 (823)
Q Consensus       678 -------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~---~kl~DfGla~~~~~~~~~  729 (823)
                                               ++.|++.+|.|+|+.+|+||||||+||+++.++.   +||+|||+++....... 
T Consensus        85 e~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dikp~Nil~~~~~~~~~~kl~Dfg~~~~~~~~~~-  163 (284)
T 3kk8_A           85 DLVTGGELFEDIVAREFYSEADASHCIQQILESIAYCHSNGIVHRNLKPENLLLASKAKGAAVKLADFGLAIEVNDSEA-  163 (284)
T ss_dssp             CCCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEESSSSTTCCEEECCCTTCEECCSSCB-
T ss_pred             ecCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCcCcCCCCHHHEEEecCCCCCcEEEeeceeeEEcccCcc-
Confidence                                     3678899999999999999999999999986554   99999999987653322 


Q ss_pred             ccccccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCC
Q 045449          730 SKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       730 ~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                        .....||+.|+|||++.+..++.++||||+||+++++++|..||.+.
T Consensus       164 --~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~  210 (284)
T 3kk8_A          164 --WHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDE  210 (284)
T ss_dssp             --CCCSCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             --ccCCCCCcCCcCchhhcCCCCCcccchHHHHHHHHHHHHCCCCCCCC
Confidence              23467999999999999999999999999999999999999998664

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}

Probab=99.88  E-value=4e-24  Score=233.12  Aligned_cols=148  Identities=28%  Similarity=0.343  Sum_probs=111.1

Q ss_pred             HhccCCccceeeccC------------CeEEEEEEehHhhHHHHHHHHHHHHHHhhcchhhHHH----------------
Q 045449          626 ATDRFSENNLIGIGN------------GMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVK----------------  677 (823)
Q Consensus       626 at~~f~~~~~lg~g~------------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~----------------  677 (823)
                      ..++|...+.||+|+            +..||||++....  ..+.+.+|++++++++||||++                
T Consensus        51 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~~--~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e  128 (349)
T 2w4o_A           51 LSDFFEVESELGRGATSIVYRCKQKGTQKPYALKVLKKTV--DKKIVRTEIGVLLRLSHPNIIKLKEIFETPTEISLVLE  128 (349)
T ss_dssp             GGGTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEC------------CHHHHHCCCTTBCCEEEEEECSSEEEEEEC
T ss_pred             ccCcEEEeeEEeeCCCEEEEEEEECCCCcEEEEEEeccch--hHHHHHHHHHHHHhCCCCCCcceeeeEecCCeEEEEEE
Confidence            356788889999886            5679999997553  3367889999999999999998                


Q ss_pred             ------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCC---CCcEEEeecccccccCCCCccc
Q 045449          678 ------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDE---DMVAHISDFGIAKLLSGEDQLS  730 (823)
Q Consensus       678 ------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~---~~~~kl~DfGla~~~~~~~~~~  730 (823)
                                              ++.|++.+|+|+|+.+|+||||||+||+++.   ++.+||+|||+++......   
T Consensus       129 ~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~~L~~LH~~~ivH~Dikp~NIll~~~~~~~~~kl~Dfg~a~~~~~~~---  205 (349)
T 2w4o_A          129 LVTGGELFDRIVEKGYYSERDAADAVKQILEAVAYLHENGIVHRDLKPENLLYATPAPDAPLKIADFGLSKIVEHQV---  205 (349)
T ss_dssp             CCCSCBHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEESSSSTTCCEEECCCC------------
T ss_pred             eCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeEecCCCcccEEEecCCCCCCEEEccCccccccCccc---
Confidence                                    3678899999999999999999999999975   7899999999998764322   


Q ss_pred             cccccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCC
Q 045449          731 KQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       731 ~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      ......||+.|+|||++.+..++.++|||||||++|++++|..||.+.
T Consensus       206 ~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~  253 (349)
T 2w4o_A          206 LMKTVCGTPGYCAPEILRGCAYGPEVDMWSVGIITYILLCGFEPFYDE  253 (349)
T ss_dssp             -------CGGGSCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCT
T ss_pred             ccccccCCCCccCHHHhcCCCCCcccchHHHHHHHHHHHhCCCCCCCC
Confidence            223467999999999999989999999999999999999999998654

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}

Probab=99.88  E-value=2.2e-24  Score=233.81  Aligned_cols=151  Identities=24%  Similarity=0.289  Sum_probs=127.2

Q ss_pred             HhccCCccceeeccC------------CeEEEEEEehHhhH--------HHHHHHHHHHHHHhhcchhhHHH--------
Q 045449          626 ATDRFSENNLIGIGN------------GMEVAVKVFHQQYE--------RALKSFEDECEVRKRIRHRNLVK--------  677 (823)
Q Consensus       626 at~~f~~~~~lg~g~------------~~~vavK~~~~~~~--------~~~~~~~~E~~~l~~l~h~niv~--------  677 (823)
                      ..++|...+.||.|+            +..||||++.....        ...+.+.+|++++++++||||++        
T Consensus        22 ~~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~Iv~~~~~~~~~  101 (335)
T 3dls_A           22 YSQKYSTMSPLGSGAFGFVWTAVDKEKNKEVVVKFIKKEKVLEDCWIEDPKLGKVTLEIAILSRVEHANIIKVLDIFENQ  101 (335)
T ss_dssp             HHHHEEEEEECSSSSSCSEEEEEETTTTEEEEEEEEESTTSCTTSEEEETTTEEEEHHHHHHTTCCCTTBCCEEEEEECS
T ss_pred             cccceEEEeEEEecCCEEEEEEEECCCCcEEEEEEEehhhcccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEeeC
Confidence            356788888899886            66799999875421        12346788999999999999998        


Q ss_pred             ---------------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccC
Q 045449          678 ---------------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLS  724 (823)
Q Consensus       678 ---------------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~  724 (823)
                                                       ++.|++.+|+|+|+.+|+||||||+||+++.++.+||+|||+++...
T Consensus       102 ~~~~lv~e~~~~g~~l~~~~~~~~~l~~~~~~~i~~qi~~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kL~Dfg~a~~~~  181 (335)
T 3dls_A          102 GFFQLVMEKHGSGLDLFAFIDRHPRLDEPLASYIFRQLVSAVGYLRLKDIIHRDIKDENIVIAEDFTIKLIDFGSAAYLE  181 (335)
T ss_dssp             SEEEEEEECCTTSCBHHHHHHTCCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTSCEEECCCTTCEECC
T ss_pred             CEEEEEEEeCCCCccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeEEeccCHHHEEEcCCCcEEEeecccceECC
Confidence                                             46788999999999999999999999999999999999999998765


Q ss_pred             CCCccccccccccCCCcCcccccCCCcc-ccccceehhhhhhccccCCCCCcCCCc
Q 045449          725 GEDQLSKQTQTLATIGYMAPEYGTKGRV-STRGDVCSFGIISGGKETRSMTVGETC  779 (823)
Q Consensus       725 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~S~Gvv~~~~~~~~~~~~~~~  779 (823)
                      ....   ....+||+.|+|||++.+..+ +.++||||+||++|++++|..||.+..
T Consensus       182 ~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~  234 (335)
T 3dls_A          182 RGKL---FYTFCGTIEYCAPEVLMGNPYRGPELEMWSLGVTLYTLVFEENPFCELE  234 (335)
T ss_dssp             TTCC---BCEECSCGGGCCHHHHTTCCBCSHHHHHHHHHHHHHHHHHSSCSCSSGG
T ss_pred             CCCc---eeccCCCccccChhhhcCCCCCCCcccchhHHHHHHHHHhCCCchhhHH
Confidence            4322   234679999999999988877 889999999999999999999997643

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...

Probab=99.88  E-value=3.9e-24  Score=235.36  Aligned_cols=151  Identities=21%  Similarity=0.416  Sum_probs=113.5

Q ss_pred             ccCCccceeeccC---------------CeEEEEEEehHhh-HHHHHHHHHHHHHHhhcchhhHHH--------------
Q 045449          628 DRFSENNLIGIGN---------------GMEVAVKVFHQQY-ERALKSFEDECEVRKRIRHRNLVK--------------  677 (823)
Q Consensus       628 ~~f~~~~~lg~g~---------------~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~--------------  677 (823)
                      ++|...+.||.|+               +..||||+++... ....++|.+|++++++++||||++              
T Consensus        45 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv  124 (373)
T 2qol_A           45 TNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIV  124 (373)
T ss_dssp             GGCCCCEEEEECSSSEEEEC-CBCTTSCBCCEEEEECCTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSCEEE
T ss_pred             hhceeeeEEeeCCCeEEEEEEEecCCCCceeEEEEEecCccCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCceEEE
Confidence            4677778888875               2349999997543 445678999999999999999998              


Q ss_pred             ---------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccc
Q 045449          678 ---------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLS  730 (823)
Q Consensus       678 ---------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~  730 (823)
                                                 ++.|++++|+|+|+.+|+||||||+||+++.++.+||+|||+++.........
T Consensus       125 ~e~~~~~sL~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~  204 (373)
T 2qol_A          125 TEYMENGSLDSFLRKHDAQFTVIQLVGMLRGIASGMKYLSDMGYVHRDLAARNILINSNLVCKVSDFGLGRVLEDDPEAA  204 (373)
T ss_dssp             EECCTTCBHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTCCEEECCC-------------
T ss_pred             EeCCCCCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHCCeeCCCCCcceEEEcCCCCEEECcCccccccccCCccc
Confidence                                       35788899999999999999999999999999999999999998765432211


Q ss_pred             -cccccccCCCcCcccccCCCccccccceehhhhhhccccC-CCCCcCCC
Q 045449          731 -KQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKET-RSMTVGET  778 (823)
Q Consensus       731 -~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~-~~~~~~~~  778 (823)
                       ......+|+.|+|||++.+..++.++|||||||++|++++ |..||.+.
T Consensus       205 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~SlG~il~ellt~g~~P~~~~  254 (373)
T 2qol_A          205 YTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGERPYWEM  254 (373)
T ss_dssp             ---------CTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTC-CTTTTC
T ss_pred             eeccCCCcCCCccChhhhccCCcCchhcHHHHHHHHHHHHhCCCCCCCCC
Confidence             1122345788999999998899999999999999999887 99998664

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B

Probab=99.88  E-value=2.7e-24  Score=243.19  Aligned_cols=150  Identities=27%  Similarity=0.410  Sum_probs=126.5

Q ss_pred             hccCCccceeeccC-----------CeEEEEEEehHhhHHHHHHHHHHHHHHhhcchhhHHH------------------
Q 045449          627 TDRFSENNLIGIGN-----------GMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVK------------------  677 (823)
Q Consensus       627 t~~f~~~~~lg~g~-----------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~------------------  677 (823)
                      .++|...+.||.|+           +..||||+++... ...+.|.+|++++++++|||||+                  
T Consensus       187 ~~~~~~~~~lG~G~fg~V~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~h~~iv~l~~~~~~~~~~lv~e~~~  265 (454)
T 1qcf_A          187 RESLKLEKKLGAGQFGEVWMATYNKHTKVAVKTMKPGS-MSVEAFLAEANVMKTLQHDKLVKLHAVVTKEPIYIITEFMA  265 (454)
T ss_dssp             GGGEEEEEEEECCSSEEEEEEEETTTEEEEEEEECTTS-BCHHHHHHHHHHHTTCCCTTBCCEEEEECSSSCEEEECCCT
T ss_pred             hHHeEEEEEcccCCceEEEEEEECCccEEEEEEecCCC-ccHHHHHHHHHHHhhCCCCCEeeEEEEEeCCccEEEEeecC
Confidence            46777788888886           4669999997543 23578999999999999999998                  


Q ss_pred             -----------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccc
Q 045449          678 -----------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQ  734 (823)
Q Consensus       678 -----------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~  734 (823)
                                             ++.|++.+|+|+|+.+|+||||||+|||++.++.+||+|||+++...... ......
T Consensus       266 ~g~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~ivHrDlkp~Nill~~~~~~kl~DFG~a~~~~~~~-~~~~~~  344 (454)
T 1qcf_A          266 KGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIEQRNYIHRDLRAANILVSASLVCKIADFGLARVIEDNE-YTAREG  344 (454)
T ss_dssp             TCBHHHHHHSHHHHTCCHHHHHHHHHHHHHHHHHHHHTTCCCSSCSGGGEEECTTCCEEECSTTGGGGBCCHH-HHTTCS
T ss_pred             CCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHhCCccCCCCCHHHEEECCCCcEEEeeCCCceEcCCCc-eeccCC
Confidence                                   35788999999999999999999999999999999999999998764322 122233


Q ss_pred             cccCCCcCcccccCCCccccccceehhhhhhccccC-CCCCcCCC
Q 045449          735 TLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKET-RSMTVGET  778 (823)
Q Consensus       735 ~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~-~~~~~~~~  778 (823)
                      ..+|+.|+|||++..+.++.++|||||||+++++++ |..||.+.
T Consensus       345 ~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~t~g~~P~~~~  389 (454)
T 1qcf_A          345 AKFPIKWTAPEAINFGSFTIKSDVWSFGILLMEIVTYGRIPYPGM  389 (454)
T ss_dssp             SSSCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTC
T ss_pred             CcccccccCHHHhccCCCCcHHHHHhHHHHHHHHHhCCCCCCCCC
Confidence            456789999999988899999999999999999998 99999764

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*

Probab=99.88  E-value=2e-23  Score=229.83  Aligned_cols=146  Identities=12%  Similarity=0.146  Sum_probs=114.7

Q ss_pred             ccCCccceeeccC------------CeEEEEEEehHhh---HHHHHHHHHHHHHHhhc--chhhHHH-------------
Q 045449          628 DRFSENNLIGIGN------------GMEVAVKVFHQQY---ERALKSFEDECEVRKRI--RHRNLVK-------------  677 (823)
Q Consensus       628 ~~f~~~~~lg~g~------------~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l--~h~niv~-------------  677 (823)
                      ..|...+.||.|+            +..||||++....   ....+.+.+|++++..+  +||||++             
T Consensus        62 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~~~~l~~~hp~iv~~~~~~~~p~d~~~  141 (371)
T 3q60_A           62 RKLKLVEPLRVGDRSVVFLVRDVERLEDFALKVFTMGAENSRSELERLHEATFAAARLLGESPEEARDRRRLLLPSDAVA  141 (371)
T ss_dssp             EEEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECCSTTHHHHHHHHHHHHHHHHHHHC----------CBCCCCEEEE
T ss_pred             eeeeeeeeccCCCCEEEEEEEECCCCceeEEEEEEecccccccHHHHHHHHHHHHHHhcccChhhhhhceeEEeeehhee
Confidence            4577788899886            6779999997532   34556788886655555  5999653             


Q ss_pred             ---------------------------------------------------------HHHHHHHHhhhcCCCCEEeccCC
Q 045449          678 ---------------------------------------------------------IISSSLEYLHFGHSIPIIHCDLK  700 (823)
Q Consensus       678 ---------------------------------------------------------~~~~~l~~L~~~h~~~ivHrdlk  700 (823)
                                                                               ++.|++.+|+|+|+.+|+|||||
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~L~~~l~~~~~~~~~~~~~~~~vk~~i~~qi~~aL~~LH~~~ivHrDik  221 (371)
T 3q60_A          142 VQSQPPFAQLSPGQDDYAVANYLLLMPAASVDLELLFSTLDFVYVFRGDEGILALHILTAQLIRLAANLQSKGLVHGHFT  221 (371)
T ss_dssp             ETTSCSSSBCSCC---CCEEEEEEEECCCSEEHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHHHHHTTEEETTCS
T ss_pred             cCCCCCeeeccCCcccceeeeEEEEecCCCCCHHHHHHHhccccchhhhhhhhhHHHHHHHHHHHHHHHHHCCCccCcCC
Confidence                                                                     12688899999999999999999


Q ss_pred             CCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccCC--CccccccceehhhhhhccccCCCCCcCCC
Q 045449          701 PSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTK--GRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       701 ~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~--~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      |+|||++.++.+||+|||+|+.....     .....||+.|+|||++.+  ..++.++|||||||++|++++|..||.+.
T Consensus       222 p~NIll~~~~~~kL~DFG~a~~~~~~-----~~~~~~t~~y~aPE~~~~~~~~~~~~~DiwSlG~il~elltg~~Pf~~~  296 (371)
T 3q60_A          222 PDNLFIMPDGRLMLGDVSALWKVGTR-----GPASSVPVTYAPREFLNASTATFTHALNAWQLGLSIYRVWCLFLPFGLV  296 (371)
T ss_dssp             GGGEEECTTSCEEECCGGGEEETTCE-----EEGGGSCGGGCCHHHHTCSEEECCHHHHHHHHHHHHHHHHHSSCSTTBC
T ss_pred             HHHEEECCCCCEEEEecceeeecCCC-----ccCccCCcCCcChhhccCCCCCcCccccHHHHHHHHHHHHhCCCCCCCc
Confidence            99999999999999999999875422     113567799999999987  67999999999999999999999999775

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.88  E-value=3.8e-22  Score=213.44  Aligned_cols=208  Identities=23%  Similarity=0.331  Sum_probs=122.0

Q ss_pred             EEeeccccccccCccccCCCCCCeEEeecccccccCCCccCCCcccCcccccCccccCCCCcccccccccCCCCceEEEe
Q 045449          258 LNLGINSFSGTIPSSITNSSKLSDLELGENLFSGFIPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIV  337 (823)
Q Consensus       258 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~l~~L~~L~L  337 (823)
                      +.+..+.+...+  .+.++++|++|++++|.++.. | .+..+++|++|++++|.+++..      . +..+++|++|++
T Consensus        24 ~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~~~~------~-~~~l~~L~~L~L   92 (308)
T 1h6u_A           24 IAAGKSNVTDTV--TQADLDGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQITDLA------P-LKNLTKITELEL   92 (308)
T ss_dssp             HHTTCSSTTSEE--CHHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCG------G-GTTCCSCCEEEC
T ss_pred             HHhCCCCcCcee--cHHHcCCcCEEEeeCCCccCc-h-hhhccCCCCEEEccCCcCCCCh------h-HccCCCCCEEEc
Confidence            344455554332  245677888888888888753 3 5777888888888888877651      2 667777777777


Q ss_pred             ecCCCCccCCccccccccccceEEecCCcceeccCccccCcccccEEEcccCcCCCCchhcccccCCCCEEEccCCCCCC
Q 045449          338 TGNPLDGILPKSIGNFSLSLETILMANCSISGNIPQVVGNLSNLLVLELGGNNLTGPIPVTFSQLQTLQAFDLTRNKLAG  417 (823)
Q Consensus       338 s~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~  417 (823)
                      ++|.+++. | .+..+ .+|++|++++|++++..  .+..+++|++|++++|++++..+  +..+++|++|+|++|++++
T Consensus        93 ~~n~l~~~-~-~~~~l-~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~  165 (308)
T 1h6u_A           93 SGNPLKNV-S-AIAGL-QSIKTLDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSD  165 (308)
T ss_dssp             CSCCCSCC-G-GGTTC-TTCCEEECTTSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC
T ss_pred             cCCcCCCc-h-hhcCC-CCCCEEECCCCCCCCch--hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCC
Confidence            77777653 2 35554 45666666666665432  15555566666666666554332  5555555556665555554


Q ss_pred             cchHhhhcCCCCCEEEcccCcCcccccccccCCCCCCeEeccCCccccccchhhhccCCCcEEecccccccc
Q 045449          418 PITDELCHLARLHSLVLQGNKFSGSIPSCLGNLTSVRVLYLGLNIFTSVLSSTIWNLKDILFIDVSSNFLDG  489 (823)
Q Consensus       418 ~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g  489 (823)
                      ..+  +..+++|+.|+|++|.+++..+  +..+++|+.|+|++|++++..+  +..+++|+.|++++|.+++
T Consensus       166 ~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          166 LTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             CGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred             Chh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence            332  5555555555555555554332  4555555555555555555432  4555555555555555543

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A

Probab=99.88  E-value=7.5e-24  Score=239.13  Aligned_cols=146  Identities=31%  Similarity=0.399  Sum_probs=123.7

Q ss_pred             hccCCccceeeccC----------CeEEEEEEehHhhHHHHHHHHHHHHHHhhcchhhHHH-------------------
Q 045449          627 TDRFSENNLIGIGN----------GMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVK-------------------  677 (823)
Q Consensus       627 t~~f~~~~~lg~g~----------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~-------------------  677 (823)
                      .++|...+.||.|+          +..||||+++...  ..+.|.+|++++++++||||++                   
T Consensus       192 ~~~~~~~~~lG~G~fg~V~~~~~~~~~vavK~~~~~~--~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~iv~e~~  269 (450)
T 1k9a_A          192 MKELKLLQTIGKGEFGDVMLGDYRGNKVAVKCIKNDA--TAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYM  269 (450)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTEEEEEEEESSCT--TSHHHHHHHHHHHTCCCTTBCCEEEEEECTTSCEEEEEECC
T ss_pred             hHHeEEEeeecCcCCeeEEEEEecCCeEEEEEeCCch--HHHHHHHHHHHHHhccCCCEEEEEEEEEcCCCceEEEEEec
Confidence            35677778899886          6779999997653  3468999999999999999998                   


Q ss_pred             ------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCcccccc
Q 045449          678 ------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQT  733 (823)
Q Consensus       678 ------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~  733 (823)
                                              ++.|++++|+|+|+.+|+||||||+|||++.++.+||+|||+++.....     ..
T Consensus       270 ~~g~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~-----~~  344 (450)
T 1k9a_A          270 AKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGNNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASST-----QD  344 (450)
T ss_dssp             TTCBHHHHHHHHCTTTCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECTTSCEEECCCTTCEECC---------
T ss_pred             CCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCCHhhEEECCCCCEEEeeCCCccccccc-----cc
Confidence                                    3578899999999999999999999999999999999999999864322     12


Q ss_pred             ccccCCCcCcccccCCCccccccceehhhhhhccccC-CCCCcCCCc
Q 045449          734 QTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKET-RSMTVGETC  779 (823)
Q Consensus       734 ~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~-~~~~~~~~~  779 (823)
                      ...+++.|+|||++.+..++.++|||||||++|++++ |..||.+..
T Consensus       345 ~~~~~~~y~aPE~~~~~~~~~~sDvwslG~~l~el~t~g~~P~~~~~  391 (450)
T 1k9a_A          345 TGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIP  391 (450)
T ss_dssp             --CCCTTTSCHHHHHSSCCCHHHHHHHHHHHHHHHHTTTCCSSTTSC
T ss_pred             CCCCCcceeCHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCC
Confidence            2357899999999999999999999999999999998 999987653

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}

Probab=99.88  E-value=7.2e-24  Score=234.25  Aligned_cols=152  Identities=30%  Similarity=0.363  Sum_probs=127.7

Q ss_pred             hccCCccceeeccC-------------------CeEEEEEEehHhh-HHHHHHHHHHHHHHhhc-chhhHHH--------
Q 045449          627 TDRFSENNLIGIGN-------------------GMEVAVKVFHQQY-ERALKSFEDECEVRKRI-RHRNLVK--------  677 (823)
Q Consensus       627 t~~f~~~~~lg~g~-------------------~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l-~h~niv~--------  677 (823)
                      .++|...+.||+|+                   +..||||++.... ....+++.+|+++++++ +||||++        
T Consensus        68 ~~~y~i~~~LG~G~~g~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~  147 (382)
T 3tt0_A           68 RDRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQD  147 (382)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEEETSSTTCTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSS
T ss_pred             hhheEeeeEEecCCCeEEEEEEEccccccccccceEEEEEeeccccCHHHHHHHHHHHHHHHHhcCCchhhhheeeeccC
Confidence            35777778888886                   1359999997543 45567899999999999 9999998        


Q ss_pred             ------------------------------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCC
Q 045449          678 ------------------------------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDED  709 (823)
Q Consensus       678 ------------------------------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~  709 (823)
                                                                      ++.|++.+|.|+|+.+|+||||||+||+++.+
T Consensus       148 ~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~  227 (382)
T 3tt0_A          148 GPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLASKKCIHRDLAARNVLVTED  227 (382)
T ss_dssp             SSCEEEEECCTTCBHHHHHHHTCCSSSSSCCCCCSSCCCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTT
T ss_pred             CceEEEEEecCCCcHHHHHHHhcccccccccccccccccccCHHHHHHHHHHHHHHHHHHHhCCEecCCCCcceEEEcCC
Confidence                                                            24578889999999999999999999999999


Q ss_pred             CcEEEeecccccccCCCCccccccccccCCCcCcccccCCCccccccceehhhhhhccccC-CCCCcCCC
Q 045449          710 MVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKET-RSMTVGET  778 (823)
Q Consensus       710 ~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~-~~~~~~~~  778 (823)
                      +.+||+|||+|+...............||+.|+|||++.+..++.++|||||||+++++++ |..||.+.
T Consensus       228 ~~~kL~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~ellt~g~~p~~~~  297 (382)
T 3tt0_A          228 NVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGV  297 (382)
T ss_dssp             CCEEECSCSCCCCSSCCCTTCCCTTCCCGGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCSSTTC
T ss_pred             CcEEEcccCcccccccccccccccCCCCCcceeCHHHhcCCCCCchhHHHHHHHHHHHHHhCCCCCCCCC
Confidence            9999999999987654443333445568899999999999999999999999999999998 99998764

>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...

Probab=99.88  E-value=8.6e-24  Score=231.95  Aligned_cols=147  Identities=33%  Similarity=0.391  Sum_probs=114.0

Q ss_pred             hccCCccceeeccC------------CeEEEEEEehHh--hHHHHHHHHHHHHHHhhcchhhHHH---------------
Q 045449          627 TDRFSENNLIGIGN------------GMEVAVKVFHQQ--YERALKSFEDECEVRKRIRHRNLVK---------------  677 (823)
Q Consensus       627 t~~f~~~~~lg~g~------------~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~---------------  677 (823)
                      .++|...+.||.|+            |..||||++...  .....+.+.+|++++++++||||++               
T Consensus        28 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~~  107 (367)
T 2fst_X           28 PERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFN  107 (367)
T ss_dssp             ETTEEEEEECC----CCEEEEEETTTTEEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGCC
T ss_pred             CCceEEeeEEeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCccccCC
Confidence            36777777888775            677999998643  2345578899999999999999987               


Q ss_pred             -----------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCc
Q 045449          678 -----------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQ  728 (823)
Q Consensus       678 -----------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~  728 (823)
                                                   ++.|++.+|+|+|+.||+||||||+||+++.++.+||+|||+++.....  
T Consensus       108 ~~~lv~e~~~~~L~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~givH~Dlkp~NIll~~~~~~kL~DFG~a~~~~~~--  185 (367)
T 2fst_X          108 DVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTADE--  185 (367)
T ss_dssp             CCEEEEECCCEECC-----CCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTCCEEECC------------
T ss_pred             eEEEEecccCCCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeeeCCCCHhhEEECCCCCEEEeecccccccccc--
Confidence                                         3678999999999999999999999999999999999999999875422  


Q ss_pred             cccccccccCCCcCcccccCC-CccccccceehhhhhhccccCCCCCcCCC
Q 045449          729 LSKQTQTLATIGYMAPEYGTK-GRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       729 ~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                         ....+||+.|+|||++.+ ..++.++||||+||+++++++|+.||.+.
T Consensus       186 ---~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~  233 (367)
T 2fst_X          186 ---MTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGT  233 (367)
T ss_dssp             --------CCCTTCCHHHHTTCCSCCTTHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred             ---CCCcCcCcCccChHHHcCCcCCCchhhHHHHHHHHHHHHhCCCCCCCC
Confidence               234679999999999876 67899999999999999999999999764

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*

Probab=99.88  E-value=5.6e-24  Score=225.36  Aligned_cols=147  Identities=22%  Similarity=0.305  Sum_probs=121.0

Q ss_pred             ccCCccceeeccC------------CeEEEEEEehHhh----HHH---HHHHHHHHHHHhhcchhhHHH-----------
Q 045449          628 DRFSENNLIGIGN------------GMEVAVKVFHQQY----ERA---LKSFEDECEVRKRIRHRNLVK-----------  677 (823)
Q Consensus       628 ~~f~~~~~lg~g~------------~~~vavK~~~~~~----~~~---~~~~~~E~~~l~~l~h~niv~-----------  677 (823)
                      ++|...+.||.|+            +..||||++....    ...   .+.|.+|++++++++||||++           
T Consensus        19 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~l   98 (287)
T 4f0f_A           19 NEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPNIVKLYGLMHNPPRM   98 (287)
T ss_dssp             TTEEEEEECCCCSSSCEEEEEETTTCCEEEEEECCCCTTTCCHHHHCCSHHHHHHHHHHTTCCCTTBCCEEEEETTTTEE
T ss_pred             ccceehhccccCCceeEEEEEEcCCceEEEEEEeeccccccchhHHHHHHHHHHHHHHHHhCCCCCchhhheeecCCCeE
Confidence            5677777888775            5679999985322    111   268999999999999999998           


Q ss_pred             ----------------------------HHHHHHHHhhhcCCCC--EEeccCCCCCEEeCCCCc-----EEEeecccccc
Q 045449          678 ----------------------------IISSSLEYLHFGHSIP--IIHCDLKPSNVLLDEDMV-----AHISDFGIAKL  722 (823)
Q Consensus       678 ----------------------------~~~~~l~~L~~~h~~~--ivHrdlk~~NiLl~~~~~-----~kl~DfGla~~  722 (823)
                                                  ++.|++.+|+|+|+.+  |+||||||+||+++.++.     +||+|||+++.
T Consensus        99 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~~~ivH~dikp~Nil~~~~~~~~~~~~kl~Dfg~~~~  178 (287)
T 4f0f_A           99 VMEFVPCGDLYHRLLDKAHPIKWSVKLRLMLDIALGIEYMQNQNPPIVHRDLRSPNIFLQSLDENAPVCAKVADFGLSQQ  178 (287)
T ss_dssp             EEECCTTCBHHHHHHCTTSCCCHHHHHHHHHHHHHHHHHHHTSSSCCBCSCCSGGGEEESCCCTTCSCCEEECCCTTCBC
T ss_pred             EEEecCCCCHHHHHhcccCCccHHHHHHHHHHHHHHHHHHHhCCCCeecCCCCcceEEEeccCCCCceeEEeCCCCcccc
Confidence                                        4678899999999999  999999999999987765     99999999985


Q ss_pred             cCCCCccccccccccCCCcCccccc--CCCccccccceehhhhhhccccCCCCCcCCCc
Q 045449          723 LSGEDQLSKQTQTLATIGYMAPEYG--TKGRVSTRGDVCSFGIISGGKETRSMTVGETC  779 (823)
Q Consensus       723 ~~~~~~~~~~~~~~gt~~y~aPE~~--~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~~  779 (823)
                      ...     ......||+.|+|||++  ....++.++||||+||++|++++|..||....
T Consensus       179 ~~~-----~~~~~~g~~~y~aPE~~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~  232 (287)
T 4f0f_A          179 SVH-----SVSGLLGNFQWMAPETIGAEEESYTEKADTYSFAMILYTILTGEGPFDEYS  232 (287)
T ss_dssp             CSS-----CEECCCCCCTTSCGGGSSCSSCEECHHHHHHHHHHHHHHHHHSSCTTTTCC
T ss_pred             ccc-----cccccCCCccccCchhhccCCCCcCchhhHHHHHHHHHHHHcCCCCCcccc
Confidence            432     12346799999999998  44567899999999999999999999997643

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens}

Probab=99.88  E-value=9.8e-24  Score=227.25  Aligned_cols=147  Identities=25%  Similarity=0.391  Sum_probs=124.7

Q ss_pred             ccCCccceeeccC------------CeEEEEEEehHhh-HHHHHHHHHHHHHHhhcchhhHHH-----------------
Q 045449          628 DRFSENNLIGIGN------------GMEVAVKVFHQQY-ERALKSFEDECEVRKRIRHRNLVK-----------------  677 (823)
Q Consensus       628 ~~f~~~~~lg~g~------------~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~-----------------  677 (823)
                      ++|...+.||+|+            +..||||++.... ....+.+.+|++++++++||||++                 
T Consensus         9 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~   88 (319)
T 4euu_A            9 HLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKVLIM   88 (319)
T ss_dssp             EEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCEEEEE
T ss_pred             CCEEEEEEecCCCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHHHhcCCCCcceEEEEeecCCCceEEEEE
Confidence            5677888899886            6679999997543 233567889999999999999998                 


Q ss_pred             ----------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEe----CCCCcEEEeecccccccCC
Q 045449          678 ----------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLL----DEDMVAHISDFGIAKLLSG  725 (823)
Q Consensus       678 ----------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl----~~~~~~kl~DfGla~~~~~  725 (823)
                                                  ++.|++.+|+|+|+.+|+||||||+||++    +.++.+||+|||+++....
T Consensus        89 e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~ivH~Dlkp~NIll~~~~~~~~~~kL~Dfg~a~~~~~  168 (319)
T 4euu_A           89 EFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLRENGIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAARELED  168 (319)
T ss_dssp             ECCTTCBHHHHHHSGGGTTCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEEECTTSCEEEEECCCTTCEECCT
T ss_pred             eCCCCCCHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHHCCEecCCCCHHHEEEeccCCCCceEEEccCCCceecCC
Confidence                                        35788999999999999999999999999    7888999999999987654


Q ss_pred             CCccccccccccCCCcCcccccC--------CCccccccceehhhhhhccccCCCCCcCC
Q 045449          726 EDQLSKQTQTLATIGYMAPEYGT--------KGRVSTRGDVCSFGIISGGKETRSMTVGE  777 (823)
Q Consensus       726 ~~~~~~~~~~~gt~~y~aPE~~~--------~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~  777 (823)
                      ...   .....||+.|+|||++.        +..++.++|||||||++|++++|..||..
T Consensus       169 ~~~---~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~  225 (319)
T 4euu_A          169 DEQ---FVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRP  225 (319)
T ss_dssp             TCC---BCCCCSCGGGCCHHHHHHHTSCCCCCCCBCTTHHHHHHHHHHHHHHHSSCSEEC
T ss_pred             CCc---eeecccCCCccCHHHhhhccccccccCCCCcHHHHHHHHHHHHHHHhCCCCCCC
Confidence            332   23457999999999875        46789999999999999999999999964

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}

Probab=99.87  E-value=8.6e-24  Score=228.72  Aligned_cols=151  Identities=26%  Similarity=0.345  Sum_probs=123.3

Q ss_pred             hccCCccceeeccC------------CeEEEEEEehHhh-HHHHHHHHHHHHHHhhcchhhHHH----------------
Q 045449          627 TDRFSENNLIGIGN------------GMEVAVKVFHQQY-ERALKSFEDECEVRKRIRHRNLVK----------------  677 (823)
Q Consensus       627 t~~f~~~~~lg~g~------------~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~----------------  677 (823)
                      .++|...+.||.|+            +..||||++.... ....+.+.+|++++++++||||++                
T Consensus         5 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~   84 (332)
T 3qd2_B            5 LTDFEPIQCMGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNAWLETPPEKWQEE   84 (332)
T ss_dssp             HHHEEEEEEEECC-CSEEEEEEETTTCCEEEEEEEECCSTTTHHHHHHHHHHHHTSCCCTTBCCEEEEEEECCSCHHHHH
T ss_pred             hhcCceeeEecCCCCeEEEEEEEcCCCcEEEEEEeecCCchhHHHHHHHHHHHHHhCCCCCEeeEEEEEEEeccchhhhh
Confidence            46788888899885            6679999986332 334578999999999999999873                


Q ss_pred             --------------------------------------------------------------------------------
Q 045449          678 --------------------------------------------------------------------------------  677 (823)
Q Consensus       678 --------------------------------------------------------------------------------  677 (823)
                                                                                                      
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~  164 (332)
T 3qd2_B           85 MDEIWLKDESTDWPLSSPSPMDAPSVKIRRMDPFSTKNTVGQLQPSSPKVYLYIQMQLCRKENLKDWMNRRCSLEDREHG  164 (332)
T ss_dssp             HHC--------------------------------------------CCCEEEEEEECCCSSCHHHHHHTCCSGGGSCHH
T ss_pred             hhhhhhccccccccccCCCcccccccceeeccccCcccccccccCCCCCceEEEEEEecCCCCHHHHHhcccCccchhhH
Confidence                                                                                            


Q ss_pred             ----HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCcc----------ccccccccCCCcCc
Q 045449          678 ----IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQL----------SKQTQTLATIGYMA  743 (823)
Q Consensus       678 ----~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~----------~~~~~~~gt~~y~a  743 (823)
                          ++.|++.+|+|+|+.+|+||||||+||+++.++.+||+|||+++........          ......+||+.|+|
T Consensus       165 ~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~a  244 (332)
T 3qd2_B          165 VCLHIFIQIAEAVEFLHSKGLMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYATHTGQVGTKLYMS  244 (332)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTCEECSCC--------------CCCSCC-CGGGSC
T ss_pred             HHHHHHHHHHHHHHHHHhCCeeecCCCcccEEEeCCCCEEEeecCcccccccchhhccccccccccccccccCCCcCccC
Confidence                3568889999999999999999999999999999999999999876543211          12234579999999


Q ss_pred             ccccCCCccccccceehhhhhhccccCCCCCcCC
Q 045449          744 PEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGE  777 (823)
Q Consensus       744 PE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~  777 (823)
                      ||++.+..++.++||||+||++++++++..++.+
T Consensus       245 PE~~~~~~~~~~~Di~slG~il~el~~~~~~~~~  278 (332)
T 3qd2_B          245 PEQIHGNNYSHKVDIFSLGLILFELLYSFSTQME  278 (332)
T ss_dssp             HHHHHCCCCCTHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred             hHHhcCCCCcchhhHHHHHHHHHHHHHcCCChhH
Confidence            9999998999999999999999999998776543

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...

Probab=99.87  E-value=6.8e-24  Score=237.25  Aligned_cols=144  Identities=28%  Similarity=0.366  Sum_probs=120.1

Q ss_pred             ccCCccceeeccC------------CeEEEEEEehHhhHHHHHHHHHHHHHHhhcchhhHHH------------------
Q 045449          628 DRFSENNLIGIGN------------GMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVK------------------  677 (823)
Q Consensus       628 ~~f~~~~~lg~g~------------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~------------------  677 (823)
                      .+|...+.||+|+            |..||||++....    +.+.+|++++++++|||||+                  
T Consensus        54 ~~y~~~~~lG~G~fg~Vy~~~~~~~~~~vaiK~~~~~~----~~~~~E~~il~~l~hpniv~l~~~~~~~~~~~~~~~~~  129 (420)
T 1j1b_A           54 VSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDK----RFKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLN  129 (420)
T ss_dssp             EEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECCT----TSCCHHHHHHHTCCCTTBCCEEEEEEEEETTTTEEEEE
T ss_pred             ceEEeeeEEeeCCCEEEEEEEECCCCcEEEEEEecccc----hhHHHHHHHHHHcCCCCccceeeEEeccCCCCcceeEE
Confidence            3577778899886            6679999986542    23457999999999999987                  


Q ss_pred             -------------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCC-CcEEEeecccccccCC
Q 045449          678 -------------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDED-MVAHISDFGIAKLLSG  725 (823)
Q Consensus       678 -------------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~-~~~kl~DfGla~~~~~  725 (823)
                                                     ++.|++.+|+|+|+.+|+||||||+|||++.+ +.+||+|||+|+....
T Consensus       130 lv~e~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~NILl~~~~~~~kl~DFG~a~~~~~  209 (420)
T 1j1b_A          130 LVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSFGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVR  209 (420)
T ss_dssp             EEEECCCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHTTTEECSCCSGGGEEEETTTTEEEECCCTTCEECCT
T ss_pred             eehhcccccHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCChhhEEEeCCCCeEEeccchhhhhccc
Confidence                                           25688999999999999999999999999955 6789999999987644


Q ss_pred             CCccccccccccCCCcCcccccCCC-ccccccceehhhhhhccccCCCCCcCCC
Q 045449          726 EDQLSKQTQTLATIGYMAPEYGTKG-RVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       726 ~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      ...   ....+||+.|+|||++.+. .|+.++||||+||++|+|++|+.||.+.
T Consensus       210 ~~~---~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~G~~pf~~~  260 (420)
T 1j1b_A          210 GEP---NVSYICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGD  260 (420)
T ss_dssp             TCC---CCSCCSCTTSCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             CCC---ceeeeeCCCcCCHHHHcCCCCCCchhhhHHHHHHHHHHHhCCCCCCCC
Confidence            322   2346799999999998764 7899999999999999999999999764

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7

Probab=99.87  E-value=9.6e-24  Score=224.79  Aligned_cols=147  Identities=21%  Similarity=0.319  Sum_probs=120.4

Q ss_pred             CCccceeeccC---------------CeEEEEEEehHhh-HHHHHHHHHHHHHHhhcchhhHHH----------------
Q 045449          630 FSENNLIGIGN---------------GMEVAVKVFHQQY-ERALKSFEDECEVRKRIRHRNLVK----------------  677 (823)
Q Consensus       630 f~~~~~lg~g~---------------~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~----------------  677 (823)
                      |...+.||.|+               +..||||++.... ....+.|.+|++++++++||||++                
T Consensus        23 ~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~v~  102 (298)
T 3pls_A           23 THSDRVIGKGHFGVVYHGEYIDQAQNRIQCAIKSLSRITEMQQVEAFLREGLLMRGLNHPNVLALIGIMLPPEGLPHVLL  102 (298)
T ss_dssp             EEEEEEEEEETTEEEEEEEEECSSSCEEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSSCCEEEE
T ss_pred             EccCceeccCCCceEEEEEEecCCCceeeeeeeeccccccHHHHHHHHHHHHHHHhCCCCCeeeEEEEEecCCCCcEEEE
Confidence            44457788876               1258999987533 455678999999999999999998                


Q ss_pred             --------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCc--c
Q 045449          678 --------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQ--L  729 (823)
Q Consensus       678 --------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~--~  729 (823)
                                                ++.|++.+|+|+|+.+|+||||||+||+++.++.+||+|||+++.......  .
T Consensus       103 e~~~~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~  182 (298)
T 3pls_A          103 PYMCHGDLLQFIRSPQRNPTVKDLISFGLQVARGMEYLAEQKFVHRDLAARNCMLDESFTVKVADFGLARDILDREYYSV  182 (298)
T ss_dssp             CCCTTCBHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECTTCCEEECCTTSSCTTTTGGGGCS
T ss_pred             ecccCCCHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCcceEEEcCCCcEEeCcCCCcccccCCccccc
Confidence                                      356889999999999999999999999999999999999999986543321  1


Q ss_pred             ccccccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcC
Q 045449          730 SKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVG  776 (823)
Q Consensus       730 ~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~  776 (823)
                      .......+|+.|+|||.+.+..++.++||||+||+++++++|..|+.
T Consensus       183 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~~~~  229 (298)
T 3pls_A          183 QQHRHARLPVKWTALESLQTYRFTTKSDVWSFGVLLWELLTRGAPPY  229 (298)
T ss_dssp             CCSSCTTCGGGGSCHHHHTTCCCCHHHHHHHHHHHHHHHHHTSCCTT
T ss_pred             ccCcCCCCCccccChhhhccCCCChhhchhhHHHHHHHHhhCCCCCC
Confidence            12234568899999999999999999999999999999999665543

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*

Probab=99.87  E-value=5.5e-24  Score=228.39  Aligned_cols=152  Identities=25%  Similarity=0.300  Sum_probs=126.5

Q ss_pred             ccCCccceeeccC-----------------CeEEEEEEehHhh-HHHHHHHHHHHHHHhhc-chhhHHH-----------
Q 045449          628 DRFSENNLIGIGN-----------------GMEVAVKVFHQQY-ERALKSFEDECEVRKRI-RHRNLVK-----------  677 (823)
Q Consensus       628 ~~f~~~~~lg~g~-----------------~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l-~h~niv~-----------  677 (823)
                      ++|...+.||.|+                 +..||||++.... ....+.+.+|+++++++ +||||++           
T Consensus        23 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~~~  102 (313)
T 1t46_A           23 NRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGGPT  102 (313)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSC
T ss_pred             hhhhHHHhhCccCCcceEEEEEeeccccchhhhhHHHhcCcchhHHHHHHHHHHHHHHhhcccCCCeeeEEEEEecCCCc
Confidence            5677778888775                 2469999997543 34457899999999999 9999997           


Q ss_pred             -----------------------------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCC
Q 045449          678 -----------------------------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDM  710 (823)
Q Consensus       678 -----------------------------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~  710 (823)
                                                                     ++.|++.+|+|+|+.+|+||||||+||+++.++
T Consensus       103 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~~  182 (313)
T 1t46_A          103 LVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLASKNCIHRDLAARNILLTHGR  182 (313)
T ss_dssp             EEEEECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEETTT
T ss_pred             EEEEecCCCCCHHHHHHhcccccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHCCeecCCCccceEEEcCCC
Confidence                                                           134778899999999999999999999999999


Q ss_pred             cEEEeecccccccCCCCccccccccccCCCcCcccccCCCccccccceehhhhhhccccC-CCCCcCCCc
Q 045449          711 VAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKET-RSMTVGETC  779 (823)
Q Consensus       711 ~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~-~~~~~~~~~  779 (823)
                      .+||+|||+++...............||+.|+|||++.+..++.++||||+||+++++++ |..||.+..
T Consensus       183 ~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~  252 (313)
T 1t46_A          183 ITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMP  252 (313)
T ss_dssp             EEEECCCGGGSCTTSCTTSEECSSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCC
T ss_pred             CEEEccccccccccccccceeccCCCCcceeeChHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCCCccc
Confidence            999999999987655443333344567889999999988899999999999999999998 999987653

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...

Probab=99.87  E-value=4.3e-24  Score=229.56  Aligned_cols=161  Identities=24%  Similarity=0.292  Sum_probs=132.9

Q ss_pred             cCHHHHHHHhccCCccceeeccC-----------------CeEEEEEEehHhh-HHHHHHHHHHHHHHhhc-chhhHHH-
Q 045449          618 FSYHELLRATDRFSENNLIGIGN-----------------GMEVAVKVFHQQY-ERALKSFEDECEVRKRI-RHRNLVK-  677 (823)
Q Consensus       618 ~~~~~l~~at~~f~~~~~lg~g~-----------------~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l-~h~niv~-  677 (823)
                      +...+..-..++|...+.||.|+                 +..||||++.... ....+.+.+|++++.++ +||||++ 
T Consensus        17 ~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~   96 (316)
T 2xir_A           17 YDASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNL   96 (316)
T ss_dssp             CCHHHHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCE
T ss_pred             ccccceecchhheeeeeEEcCCCceeEEEEEEecCCccccceEEEEEecccCCCcHHHHHHHHHHHHHHhcccCCCeeeE
Confidence            44445555567888889999886                 2568999987543 34557899999999999 7999997 


Q ss_pred             --------------------------------------------------------HHHHHHHHhhhcCCCCEEeccCCC
Q 045449          678 --------------------------------------------------------IISSSLEYLHFGHSIPIIHCDLKP  701 (823)
Q Consensus       678 --------------------------------------------------------~~~~~l~~L~~~h~~~ivHrdlk~  701 (823)
                                                                              ++.|++.+|+|+|+.+|+||||||
T Consensus        97 ~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~i~H~dikp  176 (316)
T 2xir_A           97 LGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRKCIHRDLAA  176 (316)
T ss_dssp             EEEECCTTSCCEEEEECCTTEEHHHHHHTCTTSEECC-------CTTCEEHHHHHHHHHHHHHHHHHHHHTTCCCSCCSG
T ss_pred             EEEEecCCCceEEEEEcCCCCcHHHHHHhcccccccccccchhhhccccCHHHHHHHHHHHHHHHHHHHhCCcccccCcc
Confidence                                                                    135788999999999999999999


Q ss_pred             CCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccCCCccccccceehhhhhhccccC-CCCCcCCC
Q 045449          702 SNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKET-RSMTVGET  778 (823)
Q Consensus       702 ~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~-~~~~~~~~  778 (823)
                      +||+++.++.+||+|||+++...............||+.|+|||++.+..++.++||||+||+++++++ |..||.+.
T Consensus       177 ~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~  254 (316)
T 2xir_A          177 RNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGV  254 (316)
T ss_dssp             GGEEECGGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTC
T ss_pred             ceEEECCCCCEEECCCccccccccCccceeccCCCcceeecCchhhccccccchhHHHHHHHHHHHHHhCCCCCCccc
Confidence            999999999999999999987654433333345678999999999988899999999999999999998 99998664

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A*

Probab=99.87  E-value=7.1e-24  Score=222.20  Aligned_cols=151  Identities=25%  Similarity=0.337  Sum_probs=125.9

Q ss_pred             hccCCccceeeccC-----------CeEEEEEEehHhhHHHHHHHHHHHHHHhhcchhhHHH------------------
Q 045449          627 TDRFSENNLIGIGN-----------GMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVK------------------  677 (823)
Q Consensus       627 t~~f~~~~~lg~g~-----------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~------------------  677 (823)
                      .++|...+.||.|+           +..||||++..... ..+++.+|++++.+++||||++                  
T Consensus         7 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~   85 (268)
T 3sxs_A            7 REEITLLKELGSGQFGVVKLGKWKGQYDVAVKMIKEGSM-SEDEFFQEAQTMMKLSHPKLVKFYGVCSKEYPIYIVTEYI   85 (268)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECBTTB-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSEEEEEECC
T ss_pred             hhheeeeeeeccCCCceEEEEEecCceeEEEEEeccCCC-cHHHHHHHHHHHHhCCCCCEeeEEEEEccCCceEEEEEcc
Confidence            35677778888876           45699999975432 2367999999999999999998                  


Q ss_pred             -----------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccc
Q 045449          678 -----------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQ  734 (823)
Q Consensus       678 -----------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~  734 (823)
                                             ++.|++++|+|+|+.+|+||||||+||+++.++.+||+|||+++....... .....
T Consensus        86 ~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dikp~Nil~~~~~~~~l~Dfg~~~~~~~~~~-~~~~~  164 (268)
T 3sxs_A           86 SNGCLLNYLRSHGKGLEPSQLLEMCYDVCEGMAFLESHQFIHRDLAARNCLVDRDLCVKVSDFGMTRYVLDDQY-VSSVG  164 (268)
T ss_dssp             TTCBHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHHTTEEESSCSGGGEEECTTCCEEECCTTCEEECCTTCE-EECCS
T ss_pred             CCCcHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCcCcceEEECCCCCEEEccCccceecchhhh-hcccC
Confidence                                   357889999999999999999999999999999999999999987654332 22334


Q ss_pred             cccCCCcCcccccCCCccccccceehhhhhhccccC-CCCCcCCCc
Q 045449          735 TLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKET-RSMTVGETC  779 (823)
Q Consensus       735 ~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~-~~~~~~~~~  779 (823)
                      ..+|+.|+|||++.+..++.++||||+||+++++++ |..||....
T Consensus       165 ~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~  210 (268)
T 3sxs_A          165 TKFPVKWSAPEVFHYFKYSSKSDVWAFGILMWEVFSLGKMPYDLYT  210 (268)
T ss_dssp             CCCCGGGCCHHHHHHSEEETTHHHHHHHHHHHHHHTTTCCTTTTSC
T ss_pred             CCcCcccCCHHHHhccCCchhhhhHHHHHHHHHHHcCCCCCccccC
Confidence            557788999999988899999999999999999998 999987643

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}

Probab=99.87  E-value=9.6e-24  Score=229.91  Aligned_cols=158  Identities=22%  Similarity=0.333  Sum_probs=126.5

Q ss_pred             HHHHHhccCCccceeeccC------------CeEEEEEEehHhh-----HHHHHHHHHHHHHHhhcchhhHHH-------
Q 045449          622 ELLRATDRFSENNLIGIGN------------GMEVAVKVFHQQY-----ERALKSFEDECEVRKRIRHRNLVK-------  677 (823)
Q Consensus       622 ~l~~at~~f~~~~~lg~g~------------~~~vavK~~~~~~-----~~~~~~~~~E~~~l~~l~h~niv~-------  677 (823)
                      ++....++|...+.||.|+            +..||||++....     ....+.+.+|++++++++||||++       
T Consensus        20 ~~~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~   99 (345)
T 3hko_A           20 SLLELQKKYHLKGAIGQGSYGVVRVAIENQTRAIRAIKIMNKNKIRQINPKDVERIKTEVRLMKKLHHPNIARLYEVYED   99 (345)
T ss_dssp             CHHHHHHHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHC---CHHHHHHHHHHHHHHCCCTTBCCEEEEEEC
T ss_pred             hhhhhhhheeecceeeecCCeEEEEEEECCCCceEEEeehhhhhhcccCHHHHHHHHHHHHHHHhCCCCCcceeehhhcc
Confidence            3456678899999999986            5568999997543     234578999999999999999986       


Q ss_pred             -------------------------------------------------------------------------HHHHHHH
Q 045449          678 -------------------------------------------------------------------------IISSSLE  684 (823)
Q Consensus       678 -------------------------------------------------------------------------~~~~~l~  684 (823)
                                                                                               ++.|+++
T Consensus       100 ~~~~~lv~e~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~  179 (345)
T 3hko_A          100 EQYICLVMELCHGGHLLDKLNVFIDDSTGKCAMDVVKTQICPCPECNEEAINGSIHGFRESLDFVQREKLISNIMRQIFS  179 (345)
T ss_dssp             SSEEEEEEECCCSCBHHHHEEEEEETTTTEEEEEEECCCCCCSHHHHHHHHHSCC--CEEECCHHHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEEeCCCCCcHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHH
Confidence                                                                                     2357888


Q ss_pred             HhhhcCCCCEEeccCCCCCEEeCCCC--cEEEeecccccccCCCCc--cccccccccCCCcCcccccCC--Cccccccce
Q 045449          685 YLHFGHSIPIIHCDLKPSNVLLDEDM--VAHISDFGIAKLLSGEDQ--LSKQTQTLATIGYMAPEYGTK--GRVSTRGDV  758 (823)
Q Consensus       685 ~L~~~h~~~ivHrdlk~~NiLl~~~~--~~kl~DfGla~~~~~~~~--~~~~~~~~gt~~y~aPE~~~~--~~~~~~~Dv  758 (823)
                      +|+|+|+.+|+||||||+||+++.++  .+||+|||+++.......  ........||+.|+|||++.+  ..++.++||
T Consensus       180 ~l~~LH~~~ivH~Dlkp~NIll~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~Di  259 (345)
T 3hko_A          180 ALHYLHNQGICHRDIKPENFLFSTNKSFEIKLVDFGLSKEFYKLNNGEYYGMTTKAGTPYFVAPEVLNTTNESYGPKCDA  259 (345)
T ss_dssp             HHHHHHHTTEECCCCCGGGEEESCSSSCCEEECCCTTCEEGGGTTCC--------CCCGGGCCHHHHTCSSSCCCTHHHH
T ss_pred             HHHHHHHCCccccCCChhhEEEecCCCceEEEeeccccccccccCccccccccccCCCccccCchhhccCCCCCCcHHHH
Confidence            99999999999999999999998766  899999999986533211  112345679999999999865  678999999


Q ss_pred             ehhhhhhccccCCCCCcCCCc
Q 045449          759 CSFGIISGGKETRSMTVGETC  779 (823)
Q Consensus       759 ~S~Gvv~~~~~~~~~~~~~~~  779 (823)
                      |||||+++++++|..||.+..
T Consensus       260 wslG~il~el~~g~~pf~~~~  280 (345)
T 3hko_A          260 WSAGVLLHLLLMGAVPFPGVN  280 (345)
T ss_dssp             HHHHHHHHHHHHSSCSSCCSS
T ss_pred             HHHHHHHHHHHHCCCCCCCCC
Confidence            999999999999999997653

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}

Probab=99.87  E-value=9.3e-24  Score=228.96  Aligned_cols=151  Identities=25%  Similarity=0.284  Sum_probs=111.7

Q ss_pred             ccCCccceeeccC------------CeEEEEEEehHhhHHHHHHHHHHHHHHhhcc-hhhHHH-----------------
Q 045449          628 DRFSENNLIGIGN------------GMEVAVKVFHQQYERALKSFEDECEVRKRIR-HRNLVK-----------------  677 (823)
Q Consensus       628 ~~f~~~~~lg~g~------------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~-----------------  677 (823)
                      .+|...+.||.|+            +..||||++........+.+.+|+.++.++. ||||++                 
T Consensus        28 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~~h~~iv~~~~~~~~~~~~~~~~~~  107 (337)
T 3ll6_A           28 LRLRVRRVLAEGGFAFVYEAQDVGSGREYALKRLLSNEEEKNRAIIQEVCFMKKLSGHPNIVQFCSAASIGKEESDTGQA  107 (337)
T ss_dssp             EEEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEESSHHHHHHHHHHHHHHHHHTTSTTBCCEEEEEEECTTTSTTSSE
T ss_pred             ceEEEEEEEccCCceEEEEEEECCCCcEEEEEEecCCchHHHHHHHHHHHHHHHhccCCChhhccccccccccccccCCc
Confidence            5788888899886            5679999987666666678999999999996 999986                 


Q ss_pred             ---------------------------------HHHHHHHHhhhcCCCC--EEeccCCCCCEEeCCCCcEEEeecccccc
Q 045449          678 ---------------------------------IISSSLEYLHFGHSIP--IIHCDLKPSNVLLDEDMVAHISDFGIAKL  722 (823)
Q Consensus       678 ---------------------------------~~~~~l~~L~~~h~~~--ivHrdlk~~NiLl~~~~~~kl~DfGla~~  722 (823)
                                                       ++.|++.+|+|+|+.+  |+||||||+||+++.++.+||+|||+++.
T Consensus       108 ~~~lv~e~~~g~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~~~~  187 (337)
T 3ll6_A          108 EFLLLTELCKGQLVEFLKKMESRGPLSCDTVLKIFYQTCRAVQHMHRQKPPIIHRDLKVENLLLSNQGTIKLCDFGSATT  187 (337)
T ss_dssp             EEEEEEECCSEEHHHHHHHHHTTCSCCHHHHHHHHHHHHHHHHHHHTSSSCCBCCCCCGGGCEECTTSCEEBCCCTTCBC
T ss_pred             eEEEEEEecCCCHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhCCCCEEEccCCcccEEECCCCCEEEecCcccee
Confidence                                             3568889999999999  99999999999999999999999999987


Q ss_pred             cCCCCccc----------cccccccCCCcCccccc---CCCccccccceehhhhhhccccCCCCCcCCC
Q 045449          723 LSGEDQLS----------KQTQTLATIGYMAPEYG---TKGRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       723 ~~~~~~~~----------~~~~~~gt~~y~aPE~~---~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      ........          ......||+.|+|||++   .+..++.++|||||||+++++++|..||.+.
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~  256 (337)
T 3ll6_A          188 ISHYPDYSWSAQRRALVEEEITRNTTPMYRTPEIIDLYSNFPIGEKQDIWALGCILYLLCFRQHPFEDG  256 (337)
T ss_dssp             CSSCC-------------------------------CCTTSCSSHHHHHHHHHHHHHHHHHSSCCC---
T ss_pred             ccccCcccccccccccchhhccccCCCCcCChhhhhccccCCCChHHhHHHHHHHHHHHHhCCCCCcch
Confidence            65332211          11245689999999998   5667899999999999999999999998653

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ...

Probab=99.87  E-value=1.1e-23  Score=222.12  Aligned_cols=150  Identities=24%  Similarity=0.358  Sum_probs=124.4

Q ss_pred             HhccCCccceeeccC------------CeEEEEEEehHhhH---HHHHHHHHHHHHHhhcchhhHHH-------------
Q 045449          626 ATDRFSENNLIGIGN------------GMEVAVKVFHQQYE---RALKSFEDECEVRKRIRHRNLVK-------------  677 (823)
Q Consensus       626 at~~f~~~~~lg~g~------------~~~vavK~~~~~~~---~~~~~~~~E~~~l~~l~h~niv~-------------  677 (823)
                      +.++|...+.||.|+            +..||||++.....   ...+.+.+|++++++++||||++             
T Consensus         7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l   86 (279)
T 3fdn_A            7 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDATRVYL   86 (279)
T ss_dssp             CGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEE
T ss_pred             ecccEEEeeEEecCCCeEEEEEEEccCCcEEEEEEEeccccchhhHHHHHHHHHHHHHcCCCCCCcchhheEecCCEEEE
Confidence            356788888999886            55699999865432   22467899999999999999998             


Q ss_pred             ---------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccc
Q 045449          678 ---------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLS  730 (823)
Q Consensus       678 ---------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~  730 (823)
                                                 ++.|++.+|+|+|+.+|+||||||+||+++.++.+||+|||++.......   
T Consensus        87 v~e~~~~~~l~~~l~~~~~~~~~~~~~~~~qi~~~l~~LH~~~i~H~dlkp~Nili~~~~~~~l~Dfg~~~~~~~~~---  163 (279)
T 3fdn_A           87 ILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSR---  163 (279)
T ss_dssp             EECCCTTEEHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHTTTCEECCCCGGGEEECTTSCEEECSCCEESCC-------
T ss_pred             EEecCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCEecccCChHhEEEcCCCCEEEEeccccccCCccc---
Confidence                                       36788999999999999999999999999999999999999986543321   


Q ss_pred             cccccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCCc
Q 045449          731 KQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGETC  779 (823)
Q Consensus       731 ~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~~  779 (823)
                       .....||+.|+|||++.+..++.++||||+||+++++++|..||....
T Consensus       164 -~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~  211 (279)
T 3fdn_A          164 -RTDLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANT  211 (279)
T ss_dssp             -----CCCCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCTTCCSS
T ss_pred             -ccccCCCCCccCHhHhccCCCCccchhHhHHHHHHHHHHCCCCCCCCc
Confidence             234579999999999999899999999999999999999999997643

>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*

Probab=99.87  E-value=5.9e-24  Score=226.43  Aligned_cols=149  Identities=19%  Similarity=0.201  Sum_probs=123.6

Q ss_pred             ccCCccceeeccC------------CeEEEEEEehHhhHHHHHHHHHHHHHHhhc-chhhHHH-----------------
Q 045449          628 DRFSENNLIGIGN------------GMEVAVKVFHQQYERALKSFEDECEVRKRI-RHRNLVK-----------------  677 (823)
Q Consensus       628 ~~f~~~~~lg~g~------------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~-----------------  677 (823)
                      ++|...+.||.|+            +..||||++....  ..+.+.+|++++.++ +|+++++                 
T Consensus        10 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~lv~e~   87 (298)
T 1csn_A           10 VHYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRS--DAPQLRDEYRTYKLLAGCTGIPNVYYFGQEGLHNVLVIDL   87 (298)
T ss_dssp             TTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEECCT--TSCCHHHHHHHHHHTTTCTTCCCEEEEEEETTEEEEEEEC
T ss_pred             cceEEEEEEeecCCEEEEEEEECCCCcEEEEEEeccCC--ccHHHHHHHHHHHHHhcCCCCCeEEeecCCCceeEEEEEe
Confidence            4677778888875            6779999986442  224688899999999 7888876                 


Q ss_pred             -----------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCc-----EEEeecccccccCCCCcc
Q 045449          678 -----------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMV-----AHISDFGIAKLLSGEDQL  729 (823)
Q Consensus       678 -----------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~-----~kl~DfGla~~~~~~~~~  729 (823)
                                             ++.|++++|+|+|+.+|+||||||+||+++.++.     +||+|||+++........
T Consensus        88 ~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~Dlkp~NIl~~~~~~~~~~~~kl~Dfg~~~~~~~~~~~  167 (298)
T 1csn_A           88 LGPSLEDLLDLCGRKFSVKTVAMAAKQMLARVQSIHEKSLVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVKFYRDPVTK  167 (298)
T ss_dssp             CCCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHTTTEECCCCCGGGEEECCSSSTTTTCEEECCCTTCEESBCTTTC
T ss_pred             cCCCHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHEEeccCCCCCCCeEEEEECcccccccccccc
Confidence                                   4678999999999999999999999999987765     999999999876543221


Q ss_pred             -----ccccccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCC
Q 045449          730 -----SKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       730 -----~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                           .......||+.|+|||++.+..++.++|||||||+++++++|..||...
T Consensus       168 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~  221 (298)
T 1csn_A          168 QHIPYREKKNLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGL  221 (298)
T ss_dssp             CBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSC
T ss_pred             ccccccCccCCCCCcccCCchhhcCCCCChHHHHHHHHHHHHHHHcCCCCcchh
Confidence                 1234567999999999999999999999999999999999999999774

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A

Probab=99.87  E-value=6.1e-24  Score=242.69  Aligned_cols=150  Identities=24%  Similarity=0.393  Sum_probs=125.4

Q ss_pred             ccCCccceeeccC------------CeEEEEEEehHhhHHHHHHHHHHHHHHhhcchhhHHH------------------
Q 045449          628 DRFSENNLIGIGN------------GMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVK------------------  677 (823)
Q Consensus       628 ~~f~~~~~lg~g~------------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~------------------  677 (823)
                      ++|...+.||.|+            +..||||+++.... ..++|.+|++++++++|||||+                  
T Consensus       220 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~lv~E~~  298 (495)
T 1opk_A          220 TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTM-EVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFM  298 (495)
T ss_dssp             GGEEEEEESGGGTTSSEEEEEEGGGTEEEEEEECCSSSS-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEECC
T ss_pred             HHceeeeEecCCCCeEEEEEEEcCCCeEEEEEEecCccc-chHHHHHHHHHHHhcCCCCEeeEEEEEecCCcEEEEEEcc
Confidence            4566677788775            56799999975432 3468999999999999999998                  


Q ss_pred             ------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCcccccc
Q 045449          678 ------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQT  733 (823)
Q Consensus       678 ------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~  733 (823)
                                              ++.|++.+|+|+|+.+|+||||||+|||++.++.+||+|||+++...... .....
T Consensus       299 ~~g~L~~~l~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~-~~~~~  377 (495)
T 1opk_A          299 TYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKNFIHRNLAARNCLVGENHLVKVADFGLSRLMTGDT-YTAHA  377 (495)
T ss_dssp             TTCBHHHHHHHSCTTTSCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECGGGCEEECCTTCEECCTTCC-EECCT
T ss_pred             CCCCHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCChhhEEECCCCcEEEeecccceeccCCc-eeecC
Confidence                                    35688999999999999999999999999999999999999998765332 22233


Q ss_pred             ccccCCCcCcccccCCCccccccceehhhhhhccccC-CCCCcCCCc
Q 045449          734 QTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKET-RSMTVGETC  779 (823)
Q Consensus       734 ~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~-~~~~~~~~~  779 (823)
                      ...+++.|+|||++.+..++.++|||||||++|++++ |..||.+..
T Consensus       378 ~~~~~~~y~aPE~~~~~~~~~~sDvwSlG~~l~el~t~g~~p~~~~~  424 (495)
T 1opk_A          378 GAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGID  424 (495)
T ss_dssp             TCCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCC
T ss_pred             CCcCCcceeCHhHHhcCCCCcHHhHHhHHHHHHHHHhCCCCCCCCCC
Confidence            4456789999999998899999999999999999998 888887643

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A*

Probab=99.87  E-value=8.8e-24  Score=222.63  Aligned_cols=149  Identities=22%  Similarity=0.336  Sum_probs=126.6

Q ss_pred             hccCCccceeeccC------------CeEEEEEEehHhhHHHHHHHHHHHHHHhhcchhhHHH-----------------
Q 045449          627 TDRFSENNLIGIGN------------GMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVK-----------------  677 (823)
Q Consensus       627 t~~f~~~~~lg~g~------------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~-----------------  677 (823)
                      .++|...+.||.|+            +..||+|++........+.+.+|++++++++||||++                 
T Consensus         8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   87 (277)
T 3f3z_A            8 NQYYTLENTIGRGSWGEVKIAVQKGTRIRRAAKKIPKYFVEDVDRFKQEIEIMKSLDHPNIIRLYETFEDNTDIYLVMEL   87 (277)
T ss_dssp             HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEEEC
T ss_pred             hhhEEeeeEEeecCCEEEEEEEeCCCCcEEEEEeehhhccchHHHHHHHHHHHHhCCCCCEeeEEEEEecCCeEEEEEec
Confidence            46788888899886            4568999997665555678999999999999999998                 


Q ss_pred             -----------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEe---CCCCcEEEeecccccccCCCCcccc
Q 045449          678 -----------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLL---DEDMVAHISDFGIAKLLSGEDQLSK  731 (823)
Q Consensus       678 -----------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl---~~~~~~kl~DfGla~~~~~~~~~~~  731 (823)
                                             ++.|++.+|.|+|+.+|+||||||+||++   +.++.+||+|||+++.......   
T Consensus        88 ~~~~~L~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~~~~~l~Dfg~~~~~~~~~~---  164 (277)
T 3f3z_A           88 CTGGELFERVVHKRVFRESDAARIMKDVLSAVAYCHKLNVAHRDLKPENFLFLTDSPDSPLKLIDFGLAARFKPGKM---  164 (277)
T ss_dssp             CCSCBHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEESSSSTTCCEEECCCTTCEECCTTSC---
T ss_pred             cCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCccCCCCCHHHEEEecCCCCCcEEEEecccceeccCccc---
Confidence                                   46788999999999999999999999999   7788999999999987654322   


Q ss_pred             ccccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCCc
Q 045449          732 QTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGETC  779 (823)
Q Consensus       732 ~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~~  779 (823)
                      .....||+.|+|||++.+ .++.++||||+||+++++++|..||....
T Consensus       165 ~~~~~~t~~y~aPE~~~~-~~~~~~Di~slG~~l~~l~~g~~p~~~~~  211 (277)
T 3f3z_A          165 MRTKVGTPYYVSPQVLEG-LYGPECDEWSAGVMMYVLLCGYPPFSAPT  211 (277)
T ss_dssp             BCCCCSCTTTCCHHHHTT-CBCTTHHHHHHHHHHHHHHHSSCSSCCSS
T ss_pred             hhccCCCCCccChHHhcc-cCCchhhehhHHHHHHHHHHCCCCCCCCC
Confidence            234579999999998865 48999999999999999999999997643

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ...

Probab=99.87  E-value=1.3e-23  Score=221.22  Aligned_cols=152  Identities=26%  Similarity=0.371  Sum_probs=127.1

Q ss_pred             hccCCccceeeccC------------CeEEEEEEehHhh-HHHHHHHHHHHHHHhhcchhhHHH----------------
Q 045449          627 TDRFSENNLIGIGN------------GMEVAVKVFHQQY-ERALKSFEDECEVRKRIRHRNLVK----------------  677 (823)
Q Consensus       627 t~~f~~~~~lg~g~------------~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~----------------  677 (823)
                      .++|...+.||.|+            +..||||++.... ....+.+.+|++++++++||||++                
T Consensus         6 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   85 (276)
T 2yex_A            6 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLFLE   85 (276)
T ss_dssp             HHHEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGCTTHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             ecceEEEEEeecCCCcEEEEEEECCCCcEEEEEEeeeccchhhhHHHHHHHHHHHhcCCCCceeeeeEEEcCCEEEEEEE
Confidence            45677778888875            5679999986443 344578999999999999999998                


Q ss_pred             ------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCcccccc
Q 045449          678 ------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQT  733 (823)
Q Consensus       678 ------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~  733 (823)
                                              ++.|++++|+|+|+.+|+||||||+||+++.++.+||+|||.++............
T Consensus        86 ~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~  165 (276)
T 2yex_A           86 YCSGGELFDRIEPDIGMPEPDAQRFFHQLMAGVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLN  165 (276)
T ss_dssp             CCTTEEGGGGSBTTTBCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCCTTCEECEETTEECCBC
T ss_pred             ecCCCcHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCChHHEEEccCCCEEEeeCCCccccCCCcchhccc
Confidence                                    46789999999999999999999999999999999999999998754332222234


Q ss_pred             ccccCCCcCcccccCCCcc-ccccceehhhhhhccccCCCCCcCCC
Q 045449          734 QTLATIGYMAPEYGTKGRV-STRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       734 ~~~gt~~y~aPE~~~~~~~-~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      ...||+.|+|||++.+..+ +.++||||+||+++++++|..||...
T Consensus       166 ~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~  211 (276)
T 2yex_A          166 KMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQP  211 (276)
T ss_dssp             CCCSCGGGCCGGGGTCSSBCHHHHHHHHHHHHHHHHHHSSCCCSCS
T ss_pred             CCccccCccChHHHhcCCCCCCcchHHHHHHHHHHHHhCCCCCCCC
Confidence            5679999999999987765 78999999999999999999999764

>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=99.87  E-value=3.9e-24  Score=224.37  Aligned_cols=150  Identities=25%  Similarity=0.361  Sum_probs=125.2

Q ss_pred             ccCCccceeeccC-----------CeEEEEEEehHhhHHHHHHHHHHHHHHhhcchhhHHH-------------------
Q 045449          628 DRFSENNLIGIGN-----------GMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVK-------------------  677 (823)
Q Consensus       628 ~~f~~~~~lg~g~-----------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~-------------------  677 (823)
                      ++|...+.||.|+           +..||||++..... ..+++.+|++++++++||||++                   
T Consensus        10 ~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~   88 (269)
T 4hcu_A           10 SELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAM-SEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVFEFME   88 (269)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTEEEEEEEECTTSB-CHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEEEECCT
T ss_pred             hhceeeheecCCCccEEEEEEecCCCeEEEEEeccccc-CHHHHHHHHHHHHhCCCCCEeeEEEEEecCCceEEEEEeCC
Confidence            4677778888886           46699999975432 2357999999999999999998                   


Q ss_pred             ----------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCcccccccc
Q 045449          678 ----------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQT  735 (823)
Q Consensus       678 ----------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~  735 (823)
                                            ++.|++++|+|+|+.+|+||||||+||+++.++.+||+|||+++....... ......
T Consensus        89 ~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~-~~~~~~  167 (269)
T 4hcu_A           89 HGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLEEACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQY-TSSTGT  167 (269)
T ss_dssp             TCBHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECGGGCEEECCTTGGGGBCCHHH-HSTTST
T ss_pred             CCcHHHHHHhcCcccCHHHHHHHHHHHHHHHHHHHhCCeecCCcchheEEEcCCCCEEecccccccccccccc-ccccCc
Confidence                                  357889999999999999999999999999999999999999987643322 223345


Q ss_pred             ccCCCcCcccccCCCccccccceehhhhhhccccC-CCCCcCCCc
Q 045449          736 LATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKET-RSMTVGETC  779 (823)
Q Consensus       736 ~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~-~~~~~~~~~  779 (823)
                      .+|+.|+|||++.+..++.++||||+||+++++++ |..||....
T Consensus       168 ~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~~g~~p~~~~~  212 (269)
T 4hcu_A          168 KFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRS  212 (269)
T ss_dssp             TCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCC
T ss_pred             ccccccCCHHHhcCCCCCchhhhHHHHHHHHHHhcCCCCCCCCCC
Confidence            67889999999988899999999999999999999 899987643

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}

Probab=99.87  E-value=2e-23  Score=223.67  Aligned_cols=152  Identities=24%  Similarity=0.309  Sum_probs=117.6

Q ss_pred             hccCCccceeeccC------------CeEEEEEEehHhh---HHHHHHHHHHHHHHhhcchhhHHH--------------
Q 045449          627 TDRFSENNLIGIGN------------GMEVAVKVFHQQY---ERALKSFEDECEVRKRIRHRNLVK--------------  677 (823)
Q Consensus       627 t~~f~~~~~lg~g~------------~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~--------------  677 (823)
                      .++|...+.||.|+            +..||||++....   ....+.+.+|++++++++||||++              
T Consensus        33 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv  112 (309)
T 2h34_A           33 FGPYRLRRLVGRGGMGDVYEAEDTVRERIVALKLMSETLSSDPVFRTRMQREARTAGRLQEPHVVPIHDFGEIDGQLYVD  112 (309)
T ss_dssp             -CCEEEEEEEEECSSSEEEEEEETTTTEEEEEEECGGGGGGSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEE
T ss_pred             eccEEEEEEEcCCCCeeEEEEEEcCCCeEEEEEecCcccccCHHHHHHHHHHHHHHhhcCCCCeeEEEEEEeeCCeEEEE
Confidence            46788888888875            5679999997543   345578999999999999999998              


Q ss_pred             --------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCcccc
Q 045449          678 --------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSK  731 (823)
Q Consensus       678 --------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~  731 (823)
                                                ++.|++.+|+|+|+.+|+||||||+||+++.++.+||+|||+++....... ..
T Consensus       113 ~e~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~-~~  191 (309)
T 2h34_A          113 MRLINGVDLAAMLRRQGPLAPPRAVAIVRQIGSALDAAHAAGATHRDVKPENILVSADDFAYLVDFGIASATTDEKL-TQ  191 (309)
T ss_dssp             EECCCCEEHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTSCEEECSCCC------------
T ss_pred             EEecCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCcCCcCCCChHHEEEcCCCCEEEecCccCcccccccc-cc
Confidence                                      367889999999999999999999999999999999999999987643321 22


Q ss_pred             ccccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCCc
Q 045449          732 QTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGETC  779 (823)
Q Consensus       732 ~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~~  779 (823)
                      .....||+.|+|||++.+..++.++|||||||+++++++|..||....
T Consensus       192 ~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~  239 (309)
T 2h34_A          192 LGNTVGTLYYMAPERFSESHATYRADIYALTCVLYECLTGSPPYQGDQ  239 (309)
T ss_dssp             -----CCGGGCCGGGTCC----CCCHHHHHHHHHHHHHHSSCSSCSCH
T ss_pred             ccccCCCcCccCHHHHcCCCCCchHhHHHHHHHHHHHHHCCCCCCCch
Confidence            334579999999999999899999999999999999999999997654

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7

Probab=99.87  E-value=7.7e-24  Score=230.43  Aligned_cols=154  Identities=23%  Similarity=0.295  Sum_probs=126.8

Q ss_pred             HhccCCccceeeccC-----------------CeEEEEEEehHhh-HHHHHHHHHHHHHHhhcchhhHHH----------
Q 045449          626 ATDRFSENNLIGIGN-----------------GMEVAVKVFHQQY-ERALKSFEDECEVRKRIRHRNLVK----------  677 (823)
Q Consensus       626 at~~f~~~~~lg~g~-----------------~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~----------  677 (823)
                      ..++|...+.||.|+                 +..||||+++... ....+.|.+|++++++++||||++          
T Consensus        45 ~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~  124 (343)
T 1luf_A           45 PRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDNPNIVKLLGVCAVGKP  124 (343)
T ss_dssp             CGGGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSS
T ss_pred             cHHHCeeeeeeeecCCeeEEEEEecCcCCCCCceeEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEccCCc
Confidence            356788888888876                 1679999997543 445678999999999999999997          


Q ss_pred             ------------------------------------------------------HHHHHHHHhhhcCCCCEEeccCCCCC
Q 045449          678 ------------------------------------------------------IISSSLEYLHFGHSIPIIHCDLKPSN  703 (823)
Q Consensus       678 ------------------------------------------------------~~~~~l~~L~~~h~~~ivHrdlk~~N  703 (823)
                                                                            ++.|++++|+|+|+.+|+||||||+|
T Consensus       125 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~~l~~LH~~~ivH~Dlkp~N  204 (343)
T 1luf_A          125 MCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSERKFVHRDLATRN  204 (343)
T ss_dssp             CEEEEECCTTCBHHHHHHHTCC----------------------CCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGG
T ss_pred             eEEEEecCCCCcHHHHHHHhCcccccccccccccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCcce
Confidence                                                                  13477889999999999999999999


Q ss_pred             EEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccCCCccccccceehhhhhhccccC-CCCCcCCCc
Q 045449          704 VLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKET-RSMTVGETC  779 (823)
Q Consensus       704 iLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~-~~~~~~~~~  779 (823)
                      |+++.++.+||+|||+++...............||+.|+|||++.+..++.++|||||||++|++++ |..||.+..
T Consensus       205 Il~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~  281 (343)
T 1luf_A          205 CLVGENMVVKIADFGLSRNIYSADYYKADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGLQPYYGMA  281 (343)
T ss_dssp             EEECGGGCEEECCCSCHHHHTGGGCBC----CCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSC
T ss_pred             EEECCCCeEEEeecCCCcccccCccccccCCCcccceecChhhhccCCcCcccccHHHHHHHHHHHhcCCCcCCCCC
Confidence            9999999999999999987644332223344568999999999988899999999999999999998 888987653

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*

Probab=99.87  E-value=1.8e-23  Score=224.56  Aligned_cols=154  Identities=20%  Similarity=0.318  Sum_probs=117.7

Q ss_pred             HhccCCccceeeccC---------------CeEEEEEEehHh--hHHHHHHHHHHHHHHhhcchhhHHH-----------
Q 045449          626 ATDRFSENNLIGIGN---------------GMEVAVKVFHQQ--YERALKSFEDECEVRKRIRHRNLVK-----------  677 (823)
Q Consensus       626 at~~f~~~~~lg~g~---------------~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~-----------  677 (823)
                      ..++|...+.||.|+               +..||||++...  .....+.|.+|++++++++||||++           
T Consensus        32 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~  111 (313)
T 3brb_A           32 DRNLLILGKILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQREIEEFLSEAACMKDFSHPNVIRLLGVCIEMSSQ  111 (313)
T ss_dssp             CGGGEEEEEEEEC-CCCCEEEEEEECTTSCEEEEEEEEC---CCCHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEC----
T ss_pred             CHHHeeeccceeecCCeEEEEEEEeccCCceeEEEEEEEeccccchhHHHHHHHHHHHHhcCCCCCeeeeeEEEeecccc
Confidence            456777778888876               235999998754  2445678999999999999999987           


Q ss_pred             ----------------------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeec
Q 045449          678 ----------------------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDF  717 (823)
Q Consensus       678 ----------------------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~Df  717 (823)
                                                              ++.|++++|+|+|+.+|+||||||+||+++.++.+||+||
T Consensus       112 ~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~dikp~NIli~~~~~~kl~Df  191 (313)
T 3brb_A          112 GIPKPMVILPFMKYGDLHTYLLYSRLETGPKHIPLQTLLKFMVDIALGMEYLSNRNFLHRDLAARNCMLRDDMTVCVADF  191 (313)
T ss_dssp             ---CEEEEEECCTTCBHHHHHHHTTBTTSCCCCCHHHHHHHHHHHHHHHHHHHTTTCCCCCCSGGGEEECTTSCEEECSC
T ss_pred             CCcccEEEEecccCCCHHHHHHHhhhhcCCccCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCcceEEEcCCCcEEEeec
Confidence                                                    3568889999999999999999999999999999999999


Q ss_pred             ccccccCCCCccccccccccCCCcCcccccCCCccccccceehhhhhhccccC-CCCCcCCCc
Q 045449          718 GIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKET-RSMTVGETC  779 (823)
Q Consensus       718 Gla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~-~~~~~~~~~  779 (823)
                      |+++...............+++.|+|||++.+..++.++|||||||+++++++ |..||....
T Consensus       192 g~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~  254 (313)
T 3brb_A          192 GLSKKIYSGDYYRQGRIAKMPVKWIAIESLADRVYTSKSDVWAFGVTMWEIATRGMTPYPGVQ  254 (313)
T ss_dssp             SCC----------------CCGGGSCHHHHHSSCCCHHHHHHHHHHHHHHHHTTSCCSSTTCC
T ss_pred             CcceecccccccCcccccCCCccccCchhhcCCCccchhhhHHHHHHHHHHHhcCCCCCccCC
Confidence            99987654433223334567889999999998899999999999999999999 888886643

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens}

Probab=99.87  E-value=2.7e-23  Score=219.08  Aligned_cols=150  Identities=26%  Similarity=0.419  Sum_probs=105.9

Q ss_pred             hccCCccceeeccC------------CeEEEEEEehHhhH---HHHHHHHHHHHHHhhcchhhHHH--------------
Q 045449          627 TDRFSENNLIGIGN------------GMEVAVKVFHQQYE---RALKSFEDECEVRKRIRHRNLVK--------------  677 (823)
Q Consensus       627 t~~f~~~~~lg~g~------------~~~vavK~~~~~~~---~~~~~~~~E~~~l~~l~h~niv~--------------  677 (823)
                      .++|...+.||.|+            +..||||++.....   ...+.+.+|++++++++||||++              
T Consensus        10 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv   89 (278)
T 3cok_A           10 IEDFKVGNLLGKGSFAGVYRAESIHTGLEVAIKMIDKKAMYKAGMVQRVQNEVKIHCQLKHPSILELYNYFEDSNYVYLV   89 (278)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTBCCTTBCCEEEEEECSSEEEEE
T ss_pred             cccceeeeeecCCCceEEEEEEEccCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHhCCCCCeEeEEEEEccCCeEEEE
Confidence            35677778888875            56799999975532   22467999999999999999998              


Q ss_pred             ---------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccc
Q 045449          678 ---------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLS  730 (823)
Q Consensus       678 ---------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~  730 (823)
                                                 ++.|++++|+|+|+.+|+||||||+||+++.++.+||+|||+++.......  
T Consensus        90 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~Nili~~~~~~kl~dfg~~~~~~~~~~--  167 (278)
T 3cok_A           90 LEMCHNGEMNRYLKNRVKPFSENEARHFMHQIITGMLYLHSHGILHRDLTLSNLLLTRNMNIKIADFGLATQLKMPHE--  167 (278)
T ss_dssp             EECCTTEEHHHHHHTCSSCCCHHHHHHHHHHHHHHHHHHHHTTEECSSCCGGGEEECTTCCEEECCCTTCEECC------
T ss_pred             EecCCCCcHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEEcCCCCEEEEeecceeeccCCCC--
Confidence                                       367889999999999999999999999999999999999999987643221  


Q ss_pred             cccccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCC
Q 045449          731 KQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       731 ~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      ......||+.|+|||++.+..++.++||||+||+++++++|..||...
T Consensus       168 ~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~  215 (278)
T 3cok_A          168 KHYTLCGTPNYISPEIATRSAHGLESDVWSLGCMFYTLLIGRPPFDTD  215 (278)
T ss_dssp             ------------------------CTHHHHHHHHHHHHHHSSCSSCCC
T ss_pred             cceeccCCCCcCCcchhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCh
Confidence            123457899999999999888999999999999999999999998654

>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7

Probab=99.87  E-value=1.4e-23  Score=228.65  Aligned_cols=152  Identities=26%  Similarity=0.335  Sum_probs=120.2

Q ss_pred             HHhccCCccceeeccC------------CeEEEEEEehHhhH-----HHHHHHHHHHHHHhhcchhhHHH----------
Q 045449          625 RATDRFSENNLIGIGN------------GMEVAVKVFHQQYE-----RALKSFEDECEVRKRIRHRNLVK----------  677 (823)
Q Consensus       625 ~at~~f~~~~~lg~g~------------~~~vavK~~~~~~~-----~~~~~~~~E~~~l~~l~h~niv~----------  677 (823)
                      ...++|...+.||.|+            |..||||++.....     ...+.+.+|++++++++||||++          
T Consensus         7 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~   86 (346)
T 1ua2_A            7 SRAKRYEKLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGHKSN   86 (346)
T ss_dssp             ------CEEEEEEEETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEECCTTC
T ss_pred             HHhcccEEEeEEeecCCEEEEEEEECCCCcEEEEEEEecCCcchhhhhhhHHHHHHHHHHhhCCCCCCCeEEEEEeeCCc
Confidence            3457888889999886            56799999975432     12347889999999999999998          


Q ss_pred             ------------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCC
Q 045449          678 ------------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGED  727 (823)
Q Consensus       678 ------------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~  727 (823)
                                                    ++.|++++|+|+|+.+|+||||||+||+++.++.+||+|||+++......
T Consensus        87 ~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dlkp~Nil~~~~~~~kl~Dfg~a~~~~~~~  166 (346)
T 1ua2_A           87 ISLVFDFMETDLEVIIKDNSLVLTPSHIKAYMLMTLQGLEYLHQHWILHRDLKPNNLLLDENGVLKLADFGLAKSFGSPN  166 (346)
T ss_dssp             CEEEEECCSEEHHHHHTTCCSSCCSSHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTCCEEECCCGGGSTTTSCC
T ss_pred             eEEEEEcCCCCHHHHHHhcCcCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCHHHEEEcCCCCEEEEecccceeccCCc
Confidence                                          46788999999999999999999999999999999999999998764332


Q ss_pred             ccccccccccCCCcCcccccCCC-ccccccceehhhhhhccccCCCCCcCCC
Q 045449          728 QLSKQTQTLATIGYMAPEYGTKG-RVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       728 ~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      .  ......||+.|+|||++.+. .++.++||||+||++|++++|..||.+.
T Consensus       167 ~--~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~~~~~~  216 (346)
T 1ua2_A          167 R--AYTHQVVTRWYRAPELLFGARMYGVGVDMWAVGCILAELLLRVPFLPGD  216 (346)
T ss_dssp             C--CCCCSCCCCTTCCHHHHTTCSCCCHHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             c--cCCcccccccccCchHhhCCCCCCchhhhHhHHHHHHHHHHCCCCCCCC
Confidence            2  23456799999999998654 4899999999999999999999888654

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A

Probab=99.87  E-value=1.1e-23  Score=235.59  Aligned_cols=151  Identities=26%  Similarity=0.349  Sum_probs=118.0

Q ss_pred             HHhccCCccceeeccC------------CeEEEEEEehHhh--------HHHHHHHHHHHHHHhhcchhhHHH-------
Q 045449          625 RATDRFSENNLIGIGN------------GMEVAVKVFHQQY--------ERALKSFEDECEVRKRIRHRNLVK-------  677 (823)
Q Consensus       625 ~at~~f~~~~~lg~g~------------~~~vavK~~~~~~--------~~~~~~~~~E~~~l~~l~h~niv~-------  677 (823)
                      ...++|...+.||.|+            +..||||++....        ......+.+|++++++++||||++       
T Consensus       132 ~~~~~y~~~~~LG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~l~~~~~~  211 (419)
T 3i6u_A          132 ALRDEYIMSKTLGSGACGEVKLAFERKTCKKVAIRIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFDA  211 (419)
T ss_dssp             HHHTTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGGTTC--------CCHHHHHHHHHHCCCTTBCCCCEEEES
T ss_pred             hhhccEEEEeEEeeCCCeEEEEEEECCCCcEEEEEEEEechhcccccccchhHHHHHHHHHHHHhCCCCCEeeEEEEEec
Confidence            3457899999999986            5679999986542        122346889999999999999998       


Q ss_pred             --------------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCC---CcEEEeecccccc
Q 045449          678 --------------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDED---MVAHISDFGIAKL  722 (823)
Q Consensus       678 --------------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~---~~~kl~DfGla~~  722 (823)
                                                      ++.|++.+|+|+|+.+|+||||||+|||++.+   ..+||+|||+|+.
T Consensus       212 ~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~i~~qi~~~l~~LH~~~ivHrDlkp~NIll~~~~~~~~~kl~DFG~a~~  291 (419)
T 3i6u_A          212 EDYYIVLELMEGGELFDKVVGNKRLKEATCKLYFYQMLLAVQYLHENGIIHRDLKPENVLLSSQEEDCLIKITDFGHSKI  291 (419)
T ss_dssp             SEEEEEEECCTTCBGGGGTSSSCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEESSSSSSCCEEECCSSTTTS
T ss_pred             CceEEEEEcCCCCcHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCChHhEEEecCCCcceEEEeeccccee
Confidence                                            46789999999999999999999999999654   4699999999987


Q ss_pred             cCCCCccccccccccCCCcCcccccCC---CccccccceehhhhhhccccCCCCCcCCC
Q 045449          723 LSGEDQLSKQTQTLATIGYMAPEYGTK---GRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       723 ~~~~~~~~~~~~~~gt~~y~aPE~~~~---~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      .....   .....+||+.|+|||++.+   ..|+.++||||+||++|++++|..||.+.
T Consensus       292 ~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~~~~DiwslG~il~~lltg~~pf~~~  347 (419)
T 3i6u_A          292 LGETS---LMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEH  347 (419)
T ss_dssp             CC--------------CTTCCTTTTC----CTTHHHHHHHHHHHHHHHHHHSSCSSCCC
T ss_pred             cCCCc---cccccCCCCCccCceeeecCCCCCCCchhhhHhHHHHHHHHHHCCCCCCCC
Confidence            64322   2344679999999999753   56889999999999999999999999764

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.87  E-value=4.9e-22  Score=216.76  Aligned_cols=241  Identities=16%  Similarity=0.141  Sum_probs=156.7

Q ss_pred             hhhccccccccCCccccccCCCCCcEEEccCCcccccCCcccccCCCCccEEEeeccccccccC-ccccCCCCCCe-EEe
Q 045449          207 ARLALATNNLVGVVPVTIFNMSALKEISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIP-SSITNSSKLSD-LEL  284 (823)
Q Consensus       207 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~lp~~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~-L~L  284 (823)
                      +.++.++++++ .+|..+  .+++++|+|++|+|+ .+|...+.++++|++|+|++|++.+.+| .+|.+++++.. +++
T Consensus        12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~   87 (350)
T 4ay9_X           12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   87 (350)
T ss_dssp             TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCS-EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred             CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCC-CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence            45677778887 455544  256788888888887 6776666668888888888888766555 45677777664 566


Q ss_pred             ecccccccCCCccCCCcccCcccccCccccCCCCcccccccccCCCCceEEEeec-CCCCccCCccccccccccceEEec
Q 045449          285 GENLFSGFIPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTG-NPLDGILPKSIGNFSLSLETILMA  363 (823)
Q Consensus       285 s~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~l~~L~~L~Ls~-N~l~~~~p~~~~~~~~~L~~L~L~  363 (823)
                      +.|+++.+.|..|..+++|++|++++|.++..++     ..+....++..|++.+ |++....+..|..+...+++|+|+
T Consensus        88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~-----~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~  162 (350)
T 4ay9_X           88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPD-----VHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLN  162 (350)
T ss_dssp             EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCC-----CTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECC
T ss_pred             cCCcccccCchhhhhccccccccccccccccCCc-----hhhcccchhhhhhhccccccccccccchhhcchhhhhhccc
Confidence            6788887777888888888888888888877632     2344556677777755 456655555666654567777777


Q ss_pred             CCcceeccCccccCcccccEEEccc-CcCCCCchhcccccCCCCEEEccCCCCCCcchHhhhcCCCCCEEEcccCcCccc
Q 045449          364 NCSISGNIPQVVGNLSNLLVLELGG-NNLTGPIPVTFSQLQTLQAFDLTRNKLAGPITDELCHLARLHSLVLQGNKFSGS  442 (823)
Q Consensus       364 ~N~l~~~~p~~~~~l~~L~~L~Ls~-N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~  442 (823)
                      +|+|+...+..| ...+|+.|++++ |.++...+..|..+++|++|||++|+|+...+..   +.+|+.|.+.++.--..
T Consensus       163 ~N~i~~i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l~~  238 (350)
T 4ay9_X          163 KNGIQEIHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG---LENLKKLRARSTYNLKK  238 (350)
T ss_dssp             SSCCCEECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS---CTTCCEEECTTCTTCCC
T ss_pred             cccccCCChhhc-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh---hccchHhhhccCCCcCc
Confidence            777775444444 345677777764 4455333345677777777777777777443333   33445555444432234


Q ss_pred             ccccccCCCCCCeEeccCC
Q 045449          443 IPSCLGNLTSVRVLYLGLN  461 (823)
Q Consensus       443 ~p~~~~~l~~L~~L~Ls~N  461 (823)
                      +| .+.++++|+.++++++
T Consensus       239 lP-~l~~l~~L~~l~l~~~  256 (350)
T 4ay9_X          239 LP-TLEKLVALMEASLTYP  256 (350)
T ss_dssp             CC-CTTTCCSCCEEECSCH
T ss_pred             CC-CchhCcChhhCcCCCC
Confidence            55 3666677777776654

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.87  E-value=8.4e-23  Score=234.57  Aligned_cols=207  Identities=23%  Similarity=0.336  Sum_probs=163.3

Q ss_pred             ccCCCCCCc-----cceee-eeCCCCCcEEEEEcCCCCCccccCcccCCCCCCcEEEccCCCCCCCCCCCCCCCCCCCEE
Q 045449           32 NWTSSTSVC-----IWIGI-TCDVNSHRVIGLNISSFNLQGTITPQLGNLSSLQTLDLSHNKLSGNIPSSIFNMHTLKLL  105 (823)
Q Consensus        32 ~W~~~~~~c-----~w~gv-~c~~~~~~v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L  105 (823)
                      +|..+.++|     .|.|+ .|..  .+++.|+|++|++++ +|+.+.  ++|++|+|++|+|+ .+|   ..+++|++|
T Consensus        35 ~W~~~~~~~~~~~~~~~~l~~C~~--~~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~L  105 (571)
T 3cvr_A           35 KWEKQALPGENRNEAVSLLKECLI--NQFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPASLEYL  105 (571)
T ss_dssp             HHHTTCCTTCCHHHHHHHHHHHHH--TTCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCCEE
T ss_pred             HHhccCCccccccchhhhcccccc--CCccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCCCCEE
Confidence            787777788     79999 7863  479999999999997 777664  78999999999999 677   457899999


Q ss_pred             ECCCCcCcCCCchhhhcCCCCcEEecccccccCccCccccCCCCCCccccccceeeeccceeeccCccccccchhhHHHH
Q 045449          106 DFSDNQLFGSLSSFIFNMSSMTTIDLSINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEIGNLTKLKEII  185 (823)
Q Consensus       106 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~  185 (823)
                      +|++|.|++ +|. +.+  +|++|+|++|+|++ +|.          .+++|++|+|++|+|++ +|.            
T Consensus       106 ~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~----------~l~~L~~L~Ls~N~l~~-lp~------------  157 (571)
T 3cvr_A          106 DACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE----------LPALLEYINADNNQLTM-LPE------------  157 (571)
T ss_dssp             ECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC----------CCTTCCEEECCSSCCSC-CCC------------
T ss_pred             EccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC----------cCccccEEeCCCCccCc-CCC------------
Confidence            999999987 666 655  89999999999985 443          36789999999999874 443            


Q ss_pred             HhhcCCCcccCCcccCCcchhhhhccccccccCCccccccCCCCCcEEEccCCcccccCCcccccCCCCc-------cEE
Q 045449          186 STITNSTVCEIPREIGNLPYLARLALATNNLVGVVPVTIFNMSALKEISLLNNSLSGSLPSRIDLSLPNV-------ETL  258 (823)
Q Consensus       186 ~l~~n~~~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~lp~~~~~~l~~L-------~~L  258 (823)
                                      .+++|++|+|++|+|++ +|. |.  ++|++|+|++|.|+ .+|. +..   +|       ++|
T Consensus       158 ----------------~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~---~L~~~~~~L~~L  212 (571)
T 3cvr_A          158 ----------------LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV---RNHHSEETEIFF  212 (571)
T ss_dssp             ----------------CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC-----------CCEEE
T ss_pred             ----------------cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH---hhhcccccceEE
Confidence                            23467788888998887 565 55  78889999999888 7777 432   55       888


Q ss_pred             EeeccccccccCccccCCCCCCeEEeecccccccCCCccCCCc
Q 045449          259 NLGINSFSGTIPSSITNSSKLSDLELGENLFSGFIPNTIGNLR  301 (823)
Q Consensus       259 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~  301 (823)
                      +|++|+|+ .+|..+..+++|+.|+|++|.+++.+|..+..++
T Consensus       213 ~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~  254 (571)
T 3cvr_A          213 RCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQT  254 (571)
T ss_dssp             ECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred             ecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence            88888887 5777777788888888888888887777666544

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*

Probab=99.87  E-value=9.2e-24  Score=223.02  Aligned_cols=151  Identities=23%  Similarity=0.292  Sum_probs=123.0

Q ss_pred             hccCCccceeeccC---------------CeEEEEEEehHh-hHHHHHHHHHHHHHHhhcchhhHHH-------------
Q 045449          627 TDRFSENNLIGIGN---------------GMEVAVKVFHQQ-YERALKSFEDECEVRKRIRHRNLVK-------------  677 (823)
Q Consensus       627 t~~f~~~~~lg~g~---------------~~~vavK~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~-------------  677 (823)
                      .++|...+.||+|+               +..||||++... .....+.|.+|++++++++||||++             
T Consensus        11 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~v   90 (281)
T 3cc6_A           11 REDVVLNRILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEAVIMKNLDHPHIVKLIGIIEEEPTWII   90 (281)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEEECTTCCEEEEEEEECCTTSCHHHHHHHHHHHHHHHHHCCTTBCCEEEEECSSSCEEE
T ss_pred             ccceEEEEEEEecCCeeEEEeEEcCCCCCcceEEEEecccccCchHHHHHHHHHHHHHhCCCCCcceEEEEEcCCCCEEE
Confidence            46777778888875               224999998754 2445678999999999999999998             


Q ss_pred             ---------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccc
Q 045449          678 ---------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLS  730 (823)
Q Consensus       678 ---------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~  730 (823)
                                                 ++.|++.+|+|+|+.+|+||||||+||+++.++.+||+|||+++....... .
T Consensus        91 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~-~  169 (281)
T 3cc6_A           91 MELYPYGELGHYLERNKNSLKVLTLVLYSLQICKAMAYLESINCVHRDIAVRNILVASPECVKLGDFGLSRYIEDEDY-Y  169 (281)
T ss_dssp             EECCTTCBHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCSGGGEEEEETTEEEECCCCGGGCC-------
T ss_pred             EecCCCCCHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHCCcccCCCccceEEECCCCcEEeCccCCCcccccccc-c
Confidence                                       356889999999999999999999999999999999999999987654322 1


Q ss_pred             cccccccCCCcCcccccCCCccccccceehhhhhhccccC-CCCCcCCC
Q 045449          731 KQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKET-RSMTVGET  778 (823)
Q Consensus       731 ~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~-~~~~~~~~  778 (823)
                      ......+|+.|+|||++.+..++.++|||||||+++++++ |..||...
T Consensus       170 ~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~llt~g~~p~~~~  218 (281)
T 3cc6_A          170 KASVTRLPIKWMSPESINFRRFTTASDVWMFAVCMWEILSFGKQPFFWL  218 (281)
T ss_dssp             ---CCCCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTS
T ss_pred             ccccCCCCcceeCchhhccCCCCchhccHHHHHHHHHHHhCCCCCcccC
Confidence            2234467889999999988889999999999999999997 99998654

>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A

Probab=99.87  E-value=1e-23  Score=224.35  Aligned_cols=153  Identities=23%  Similarity=0.260  Sum_probs=123.1

Q ss_pred             HHhccCCccceeeccC------------CeEEEEEEehHhhHHHHHHHHHHHHHHhhcchhhHHH---------------
Q 045449          625 RATDRFSENNLIGIGN------------GMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVK---------------  677 (823)
Q Consensus       625 ~at~~f~~~~~lg~g~------------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~---------------  677 (823)
                      ...++|...+.||.|+            +..||||++....  ..+++.+|++++++++|++++.               
T Consensus         6 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~lv   83 (296)
T 4hgt_A            6 RVGNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKT--KHPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMV   83 (296)
T ss_dssp             -----CEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEC-----CCCHHHHHHHHHHHTTSTTCCCEEEEEEETTEEEEE
T ss_pred             ccCCceEEeeeecCCCCeEEEEEEEcCCCceEEEEeecccc--cchHHHHHHHHHHHhcCCCCCCeeeeecCCCCceEEE
Confidence            3457888899999886            5679999865442  2246889999999999888775               


Q ss_pred             --------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEe---CCCCcEEEeecccccccCCCCc
Q 045449          678 --------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLL---DEDMVAHISDFGIAKLLSGEDQ  728 (823)
Q Consensus       678 --------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl---~~~~~~kl~DfGla~~~~~~~~  728 (823)
                                                ++.|++.+|+|+|+.+|+||||||+||++   +.++.+||+|||+++.......
T Consensus        84 ~e~~~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~ivH~Dlkp~NIl~~~~~~~~~~kL~Dfg~a~~~~~~~~  163 (296)
T 4hgt_A           84 MELLGPSLEDLFNFCSRKFSLKTVLLLADQMISRIEYIHSKNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDART  163 (296)
T ss_dssp             EECCCCBHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECCGGGTTCEEECCCTTCEECBCTTT
T ss_pred             EEccCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeeeeccCCCCeEEEecCccceeccCccc
Confidence                                      46789999999999999999999999999   7889999999999987654322


Q ss_pred             c-----ccccccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCCc
Q 045449          729 L-----SKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGETC  779 (823)
Q Consensus       729 ~-----~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~~  779 (823)
                      .     .......||+.|+|||++.+..++.++||||+||+++++++|+.||.+..
T Consensus       164 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~  219 (296)
T 4hgt_A          164 HQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLK  219 (296)
T ss_dssp             CCBCCCCCSCCCCSCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCC
T ss_pred             CccCCCCcccccCCCccccchHHhcCCCCCchhHHHHHHHHHHHHhcCCCCCcccc
Confidence            1     12234679999999999999999999999999999999999999997643

>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A*

Probab=99.87  E-value=3.1e-23  Score=227.53  Aligned_cols=159  Identities=23%  Similarity=0.289  Sum_probs=127.2

Q ss_pred             ccCHHHHHHHhccCCccceeeccC-----------CeEEEEEEehHh-----------hHHHHHHHHHHHHHHhhcchhh
Q 045449          617 RFSYHELLRATDRFSENNLIGIGN-----------GMEVAVKVFHQQ-----------YERALKSFEDECEVRKRIRHRN  674 (823)
Q Consensus       617 ~~~~~~l~~at~~f~~~~~lg~g~-----------~~~vavK~~~~~-----------~~~~~~~~~~E~~~l~~l~h~n  674 (823)
                      +....++....++|...+.||.|+           |..||||++...           .....+.+.+|++++++++|||
T Consensus        11 ~~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~   90 (362)
T 3pg1_A           11 RDLIAELHAMQSPYTVQRFISSGSYGAVCAGVDSEGIPVAIKRVFNTVSDGRTVNILSDSFLCKRVLREIRLLNHFHHPN   90 (362)
T ss_dssp             HHHHHHHHHTTCSCEEEEEEEEETTEEEEEEECTTSCEEEEEEECEECCTTSCEEGGGSHHHHHHHHHHHHHHHHCCCTT
T ss_pred             HHHHHHHHHhccceEEeEEeccCCCEEEEEEECCCCCeEEEEeccccCCccchhhhhhhhhHHHHHHHHHHHHHhCCCcC
Confidence            345678888899999999999986           567999988432           2334578999999999999999


Q ss_pred             HHH---------------------------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCC
Q 045449          675 LVK---------------------------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDED  709 (823)
Q Consensus       675 iv~---------------------------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~  709 (823)
                      |++                                             ++.|++.+|+|+|+.+|+||||||+||+++.+
T Consensus        91 iv~~~~~~~~~~~~~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dlkp~NIl~~~~  170 (362)
T 3pg1_A           91 ILGLRDIFVHFEEPAMHKLYLVTELMRTDLAQVIHDQRIVISPQHIQYFMYHILLGLHVLHEAGVVHRDLHPGNILLADN  170 (362)
T ss_dssp             BCCCSEEEEECCTTTCCEEEEEEECCSEEHHHHHHCTTSCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTT
T ss_pred             ccceeeeEEeccCCCcceEEEEEccCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHCcCEecCCChHHEEEcCC
Confidence            997                                             36789999999999999999999999999999


Q ss_pred             CcEEEeecccccccCCCCccccccccccCCCcCcccccCC-CccccccceehhhhhhccccCCCCCcCCC
Q 045449          710 MVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTK-GRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       710 ~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      +.+||+|||+++......   ......||+.|+|||++.+ ..++.++||||+||+++++++|..||.+.
T Consensus       171 ~~~kl~Dfg~~~~~~~~~---~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~  237 (362)
T 3pg1_A          171 NDITICDFNLAREDTADA---NKTHYVTHRWYRAPELVMQFKGFTKLVDMWSAGCVMAEMFNRKALFRGS  237 (362)
T ss_dssp             CCEEECCTTC------------------CGGGCCHHHHTTCTTCCTHHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred             CCEEEEecCccccccccc---ccceecccceecCcHHhcCCCCCCcHhHHHhHHHHHHHHHhCCCCCCCC
Confidence            999999999998644322   2234578999999998876 67899999999999999999999999764

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens}

Probab=99.87  E-value=1.8e-23  Score=223.89  Aligned_cols=144  Identities=31%  Similarity=0.373  Sum_probs=113.0

Q ss_pred             ccCCccceeeccC----------CeEEEEEEehHhhHHHHHHHHHHHHHHhhcchhhHHH--------------------
Q 045449          628 DRFSENNLIGIGN----------GMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVK--------------------  677 (823)
Q Consensus       628 ~~f~~~~~lg~g~----------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~--------------------  677 (823)
                      ++|...+.||+|+          +..||||++....  ..+.|.+|++++++++||||++                    
T Consensus         8 ~~~~~~~~lg~G~~g~V~~~~~~~~~vavK~~~~~~--~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~lv~e~~~~~~   85 (307)
T 2eva_A            8 KEIEVEEVVGRGAFGVVCKAKWRAKDVAIKQIESES--ERKAFIVELRQLSRVNHPNIVKLYGACLNPVCLVMEYAEGGS   85 (307)
T ss_dssp             GGEEEEEEEECCSSSEEEEEEETTEEEEEEECSSTT--HHHHHHHHHHHHHHCCCTTBCCEEEBCTTTTEEEEECCTTCB
T ss_pred             hHeeeeeEeecCCCceEEEEEECCeeEEEEEecChh--HHHHHHHHHHHHhcCCCCCcCeEEEEEcCCcEEEEEcCCCCC
Confidence            4677778888886          5679999996543  3468999999999999999998                    


Q ss_pred             ---------------------HHHHHHHHhhhcCC---CCEEeccCCCCCEEeCCCCc-EEEeecccccccCCCCccccc
Q 045449          678 ---------------------IISSSLEYLHFGHS---IPIIHCDLKPSNVLLDEDMV-AHISDFGIAKLLSGEDQLSKQ  732 (823)
Q Consensus       678 ---------------------~~~~~l~~L~~~h~---~~ivHrdlk~~NiLl~~~~~-~kl~DfGla~~~~~~~~~~~~  732 (823)
                                           ++.|++++|+|+|+   .+|+||||||+||+++.++. +||+|||+++.....     .
T Consensus        86 L~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~~kl~Dfg~~~~~~~~-----~  160 (307)
T 2eva_A           86 LYNVLHGAEPLPYYTAAHAMSWCLQCSQGVAYLHSMQPKALIHRDLKPPNLLLVAGGTVLKICDFGTACDIQTH-----M  160 (307)
T ss_dssp             HHHHHHCSSSEECCCHHHHHHHHHHHHHHHHHHHTCSSSCCCCCCCSGGGEEEETTTTEEEECCCCC-------------
T ss_pred             HHHHHhccCCCCccCHHHHHHHHHHHHHHHHHHHhCCCCCeecCCCChhHEEEeCCCCEEEEcccccccccccc-----c
Confidence                                 23455666666666   89999999999999988775 799999999865322     2


Q ss_pred             cccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCC
Q 045449          733 TQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       733 ~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      ....||+.|+|||++.+..++.++|||||||+++++++|+.||...
T Consensus       161 ~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~  206 (307)
T 2eva_A          161 TNNKGSAAWMAPEVFEGSNYSEKCDVFSWGIILWEVITRRKPFDEI  206 (307)
T ss_dssp             ----CCTTSSCHHHHTCCCCCTHHHHHHHHHHHHHHHHTCCTTTTT
T ss_pred             ccCCCCCceEChhhhCCCCCCcHHHHHHHHHHHHHHHHCCCCchhh
Confidence            2346999999999999989999999999999999999999999754

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...

Probab=99.87  E-value=1.8e-23  Score=222.70  Aligned_cols=150  Identities=24%  Similarity=0.321  Sum_probs=120.5

Q ss_pred             ccCCccceeeccC---------------CeEEEEEEehHhh-HHHHHHHHHHHHHHhhcchhhHHH--------------
Q 045449          628 DRFSENNLIGIGN---------------GMEVAVKVFHQQY-ERALKSFEDECEVRKRIRHRNLVK--------------  677 (823)
Q Consensus       628 ~~f~~~~~lg~g~---------------~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~--------------  677 (823)
                      .+|...+.||.|+               ...||||++.... ....+.|.+|++++++++||||++              
T Consensus        25 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~  104 (298)
T 3f66_A           25 LIVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLV  104 (298)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEEC-----CEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSSCCEE
T ss_pred             eehhhcceeeecCCceEEEEEEecCCCceeEEEEEecccCCCHHHHHHHHHHHHHHHhCCCCCEeeeeeEEEcCCCceEE
Confidence            3566677888876               2247999887533 445578999999999999999998              


Q ss_pred             ----------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCcc
Q 045449          678 ----------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQL  729 (823)
Q Consensus       678 ----------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~  729 (823)
                                                  ++.|++.+|+|+|+.+|+||||||+||+++.++.+||+|||+++........
T Consensus       105 v~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~i~H~dikp~Nil~~~~~~~kl~Dfg~a~~~~~~~~~  184 (298)
T 3f66_A          105 VLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKYLASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYY  184 (298)
T ss_dssp             EEECCTTCBHHHHHHCTTCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECTTCCEEECSCGGGCCCSCGGGC
T ss_pred             EEeCCCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhCCccCCCCchheEEECCCCCEEECcccccccccccchh
Confidence                                        3568899999999999999999999999999999999999999876443221


Q ss_pred             --ccccccccCCCcCcccccCCCccccccceehhhhhhccccCC-CCCcCC
Q 045449          730 --SKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETR-SMTVGE  777 (823)
Q Consensus       730 --~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~-~~~~~~  777 (823)
                        .......||+.|+|||.+.+..++.++||||+||+++++++| ..||..
T Consensus       185 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~  235 (298)
T 3f66_A          185 SVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPD  235 (298)
T ss_dssp             BC-----CCBCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTT
T ss_pred             ccccccCCCCCccccChHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCCcc
Confidence              122345678899999999888999999999999999999994 455544

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A

Probab=99.87  E-value=8.1e-24  Score=223.66  Aligned_cols=151  Identities=20%  Similarity=0.353  Sum_probs=123.3

Q ss_pred             hccCCccceeeccC-----------CeEEEEEEehHhhHHHHHHHHHHHHHHhhcchhhHHH------------------
Q 045449          627 TDRFSENNLIGIGN-----------GMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVK------------------  677 (823)
Q Consensus       627 t~~f~~~~~lg~g~-----------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~------------------  677 (823)
                      .++|...+.||.|+           +..||||++..... ..+++.+|++++.+++||||++                  
T Consensus        23 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~  101 (283)
T 3gen_A           23 PKDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSM-SEDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFIITEYM  101 (283)
T ss_dssp             GGGEEEEEECC---CEEEEEEEETTTEEEEEEEECTTSB-CHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEEECCC
T ss_pred             HHHHHhHhhcCCCCCceEEEEEEcCCCeEEEEEecCCCC-CHHHHHHHHHHHhcCCCCCEeeEEEEEecCCCeEEEEecc
Confidence            45677778888875           45699999975532 2367899999999999999998                  


Q ss_pred             -----------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccc
Q 045449          678 -----------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQ  734 (823)
Q Consensus       678 -----------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~  734 (823)
                                             ++.|++.+|+|+|+.+|+||||||+||+++.++.+||+|||+++....... .....
T Consensus       102 ~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~~~~~-~~~~~  180 (283)
T 3gen_A          102 ANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLESKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEY-TSSVG  180 (283)
T ss_dssp             TTCBHHHHHHCGGGCCCHHHHHHHHHHHHHHHHHHHHTTCCCSSCSGGGEEECTTSCEEECSTTGGGGBCCHHH-HSTTS
T ss_pred             CCCcHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHCCccCCCCccceEEEcCCCCEEEcccccccccccccc-ccccC
Confidence                                   367889999999999999999999999999999999999999987643322 22334


Q ss_pred             cccCCCcCcccccCCCccccccceehhhhhhccccC-CCCCcCCCc
Q 045449          735 TLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKET-RSMTVGETC  779 (823)
Q Consensus       735 ~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~-~~~~~~~~~  779 (823)
                      ..+|+.|+|||++.+..++.++||||+||+++++++ |..||....
T Consensus       181 ~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~~l~t~g~~p~~~~~  226 (283)
T 3gen_A          181 SKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFT  226 (283)
T ss_dssp             TTSCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTTCCTTTTSC
T ss_pred             CccCcccCCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCccccC
Confidence            457888999999998899999999999999999998 999987643

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...

Probab=99.87  E-value=1.2e-23  Score=226.79  Aligned_cols=158  Identities=23%  Similarity=0.347  Sum_probs=129.6

Q ss_pred             HHHHHHhccCCccceeeccC-----------------CeEEEEEEehHhh-HHHHHHHHHHHHHHhhcchhhHHH-----
Q 045449          621 HELLRATDRFSENNLIGIGN-----------------GMEVAVKVFHQQY-ERALKSFEDECEVRKRIRHRNLVK-----  677 (823)
Q Consensus       621 ~~l~~at~~f~~~~~lg~g~-----------------~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~-----  677 (823)
                      ++...+.++|...+.||.|+                 +..||||++.... ......|.+|++++++++||||++     
T Consensus        18 ~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~   97 (322)
T 1p4o_A           18 DEWEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGVV   97 (322)
T ss_dssp             CTTBCCGGGEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTSCHHHHHHHHHHHHHGGGCCCTTBCCEEEEE
T ss_pred             hhhcchhhheeeeeEeccCCceEEEeeeecCccCCCCceEEEEEecccccCHHHHHHHHHHHHHHHhcCCCCEeeeEEEE
Confidence            33444567888888999886                 2358999987543 344567999999999999999998     


Q ss_pred             ---------------------------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcE
Q 045449          678 ---------------------------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVA  712 (823)
Q Consensus       678 ---------------------------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~  712 (823)
                                                                   ++.|++.+|+|+|+.+|+||||||+||+++.++.+
T Consensus        98 ~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dikp~NIli~~~~~~  177 (322)
T 1p4o_A           98 SQGQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLNANKFVHRDLAARNCMVAEDFTV  177 (322)
T ss_dssp             CSSSSCEEEEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHHHTTCBCSCCSGGGEEECTTCCE
T ss_pred             ccCCccEEEEEeCCCCcHHHHHHHhchhhccCCCCCCcCHHHHHHHHHHHHHHHHHHHHCCCccCCCccceEEEcCCCeE
Confidence                                                         24578889999999999999999999999999999


Q ss_pred             EEeecccccccCCCCccccccccccCCCcCcccccCCCccccccceehhhhhhccccC-CCCCcCCC
Q 045449          713 HISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKET-RSMTVGET  778 (823)
Q Consensus       713 kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~-~~~~~~~~  778 (823)
                      ||+|||+++...............||+.|+|||++.+..++.++||||+||+++++++ |..||...
T Consensus       178 kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~  244 (322)
T 1p4o_A          178 KIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGL  244 (322)
T ss_dssp             EECCTTCCCGGGGGGCEEGGGSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTSCCTTTTS
T ss_pred             EECcCccccccccccccccccCCCCCCCccChhhhccCCCCchhhHHHHHHHHHHHHhcCCCccccC
Confidence            9999999987654333233344567899999999988889999999999999999998 88888764

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens}

Probab=99.87  E-value=2.8e-23  Score=222.71  Aligned_cols=149  Identities=28%  Similarity=0.379  Sum_probs=119.8

Q ss_pred             ccCCccceeeccC------------CeEEEEEEehHhh--HHHHHHHHHHHHHHhhcchhhHHH----------------
Q 045449          628 DRFSENNLIGIGN------------GMEVAVKVFHQQY--ERALKSFEDECEVRKRIRHRNLVK----------------  677 (823)
Q Consensus       628 ~~f~~~~~lg~g~------------~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~----------------  677 (823)
                      ++|...+.||.|+            |..||||++....  ....+.+.+|++++++++||||++                
T Consensus         3 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   82 (311)
T 4agu_A            3 EKYEKIGKIGEGSYGVVFKCRNRDTGQIVAIKKFLESEDDPVIKKIALREIRMLKQLKHPNLVNLLEVFRRKRRLHLVFE   82 (311)
T ss_dssp             CCEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECCCCC-HHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             ccceEeeEEeecCCeEEEEEEeCCCCcEEEEEEeeccccchHHHHHHHHHHHHHHhCCCCCccchhheeecCCeEEEEEE
Confidence            5677788888886            5679999885432  344577899999999999999998                


Q ss_pred             ------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCcccccc
Q 045449          678 ------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQT  733 (823)
Q Consensus       678 ------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~  733 (823)
                                              ++.|++.+|+|+|+.+|+||||||+||+++.++.+||+|||+++.......  ...
T Consensus        83 ~~~~~~l~~~~~~~~~~~~~~~~~i~~~l~~~l~~lH~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~--~~~  160 (311)
T 4agu_A           83 YCDHTVLHELDRYQRGVPEHLVKSITWQTLQAVNFCHKHNCIHRDVKPENILITKHSVIKLCDFGFARLLTGPSD--YYD  160 (311)
T ss_dssp             CCSEEHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEECC---------
T ss_pred             eCCCchHHHHHhhhcCCCHHHHHHHHHHHHHHHHHHHHCCCcCCCCChhhEEEcCCCCEEEeeCCCchhccCccc--ccC
Confidence                                    356889999999999999999999999999999999999999987653322  223


Q ss_pred             ccccCCCcCcccccCC-CccccccceehhhhhhccccCCCCCcCCC
Q 045449          734 QTLATIGYMAPEYGTK-GRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       734 ~~~gt~~y~aPE~~~~-~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      ...||+.|+|||++.+ ..++.++||||+||+++++++|..||.+.
T Consensus       161 ~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~  206 (311)
T 4agu_A          161 DEVATRWYRSPELLVGDTQYGPPVDVWAIGCVFAELLSGVPLWPGK  206 (311)
T ss_dssp             -----GGGCCHHHHHTCSCCCTHHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred             CCcCCccccChHHHhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCC
Confidence            4578999999998875 56899999999999999999999998664

>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*

Probab=99.87  E-value=2.5e-23  Score=231.07  Aligned_cols=146  Identities=27%  Similarity=0.309  Sum_probs=124.3

Q ss_pred             hccCCccceeeccC------------CeEEEEEEehHhhHHHHHHHHHHHHHHhhcc--------hhhHHH---------
Q 045449          627 TDRFSENNLIGIGN------------GMEVAVKVFHQQYERALKSFEDECEVRKRIR--------HRNLVK---------  677 (823)
Q Consensus       627 t~~f~~~~~lg~g~------------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~--------h~niv~---------  677 (823)
                      .++|...+.||.|+            ++.||||++... ....+.+.+|++++++++        |+||++         
T Consensus        36 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~-~~~~~~~~~E~~~l~~l~~~~~~~~~~~~iv~~~~~~~~~~  114 (397)
T 1wak_A           36 NGRYHVIRKLGWGHFSTVWLSWDIQGKKFVAMKVVKSA-EHYTETALDEIRLLKSVRNSDPNDPNREMVVQLLDDFKISG  114 (397)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSC-HHHHHHHHHHHHHHHHHHHSCTTCGGGGGBCCEEEEEEEEE
T ss_pred             CCeEEEEEEeeecCCeeEEEEEecCCCeEEEEEEEecC-CcchHHHHHHHHHHHHHhhcCCCCCCcceeeeeecceeecC
Confidence            36788889999886            677999999754 344578899999999996        677776         


Q ss_pred             ------------------------------------HHHHHHHHhhhcCCC-CEEeccCCCCCEEeCCCC----------
Q 045449          678 ------------------------------------IISSSLEYLHFGHSI-PIIHCDLKPSNVLLDEDM----------  710 (823)
Q Consensus       678 ------------------------------------~~~~~l~~L~~~h~~-~ivHrdlk~~NiLl~~~~----------  710 (823)
                                                          ++.|++.+|+|+|+. +|+||||||+|||++.++          
T Consensus       115 ~~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH~~~givHrDikp~NIll~~~~~~~~~~~~~~  194 (397)
T 1wak_A          115 VNGTHICMVFEVLGHHLLKWIIKSNYQGLPLPCVKKIIQQVLQGLDYLHTKCRIIHTDIKPENILLSVNEQYIRRLAAEA  194 (397)
T ss_dssp             TTEEEEEEEECCCCCBHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHTTCEECCCCSGGGEEECCCHHHHHHHHHHH
T ss_pred             CCCceEEEEEeccCccHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHeeEeccchhhhhhhhhh
Confidence                                                467899999999998 999999999999999775          


Q ss_pred             ---------------------------------------cEEEeecccccccCCCCccccccccccCCCcCcccccCCCc
Q 045449          711 ---------------------------------------VAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGR  751 (823)
Q Consensus       711 ---------------------------------------~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~  751 (823)
                                                             .+||+|||+|+.....     ....+||+.|+|||++.+..
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~DfG~a~~~~~~-----~~~~~gt~~y~aPE~~~~~~  269 (397)
T 1wak_A          195 TEWQRSGAPPPSGSAVSTAPATAGNFLVNPLEPKNAEKLKVKIADLGNACWVHKH-----FTEDIQTRQYRSLEVLIGSG  269 (397)
T ss_dssp             C---------------------CCTTSCCTTSGGGGGGCCEEECCGGGCEETTBC-----SCSCCSCGGGCCHHHHHTSC
T ss_pred             HHHhhcCCCCCCCCccccCCcccccccccccccccccccceEecccccccccccc-----CccCCCCCcccCChhhcCCC
Confidence                                                   7999999999876432     23457999999999999989


Q ss_pred             cccccceehhhhhhccccCCCCCcCCC
Q 045449          752 VSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       752 ~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      ++.++|||||||++|++++|..||...
T Consensus       270 ~~~~~DiwslG~il~elltg~~pf~~~  296 (397)
T 1wak_A          270 YNTPADIWSTACMAFELATGDYLFEPH  296 (397)
T ss_dssp             CCTHHHHHHHHHHHHHHHHSSCSCCCC
T ss_pred             CCcHHHHHHHHHHHHHHhhCCCCCCCC
Confidence            999999999999999999999999653

>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A

Probab=99.87  E-value=6.2e-24  Score=233.23  Aligned_cols=153  Identities=20%  Similarity=0.178  Sum_probs=121.1

Q ss_pred             HhccCCccceeeccC-----------------CeEEEEEEehHhhHHH-----------HHHHHHHHHHHhhcchhhHHH
Q 045449          626 ATDRFSENNLIGIGN-----------------GMEVAVKVFHQQYERA-----------LKSFEDECEVRKRIRHRNLVK  677 (823)
Q Consensus       626 at~~f~~~~~lg~g~-----------------~~~vavK~~~~~~~~~-----------~~~~~~E~~~l~~l~h~niv~  677 (823)
                      ..++|...+.||.|+                 +..||||++.......           ...+..|+..+.+++||||++
T Consensus        33 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~~iv~  112 (364)
T 3op5_A           33 AAAAWKVGLPIGQGGFGCIYLADMNSSESVGSDAPCVVKVEPSDNGPLFTELKFYQRAAKPEQIQKWIRTRKLKYLGVPK  112 (364)
T ss_dssp             TCCEEEEEEECCCC-CCEEEEEEECCSSCCCTTCSEEEEEEETTCHHHHHHHHHHHHHCCHHHHHHHHHHTTCSCCCSCC
T ss_pred             CCCeEEEEEEEecCCCeEEEEeeecCccccccccceEEEEeeccchhHHHHHHHHHhhhhhHHHHHHHHHhhccCCCCCe
Confidence            346788888899886                 2568999986443211           123456667778888998876


Q ss_pred             --------------------------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeC--CCCc
Q 045449          678 --------------------------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLD--EDMV  711 (823)
Q Consensus       678 --------------------------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~--~~~~  711 (823)
                                                                  ++.|++.+|+|+|+.+|+||||||+|||++  .++.
T Consensus       113 ~~~~~~~~~~~~~~~~lv~e~~g~~L~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~iiHrDlkp~Nill~~~~~~~  192 (364)
T 3op5_A          113 YWGSGLHDKNGKSYRFMIMDRFGSDLQKIYEANAKRFSRKTVLQLSLRILDILEYIHEHEYVHGDIKASNLLLNYKNPDQ  192 (364)
T ss_dssp             EEEEEEEEETTEEEEEEEEECEEEEHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEEESSCTTC
T ss_pred             EEeeeeeccCCcceEEEEEeCCCCCHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCeEEecCCHHHEEEecCCCCe
Confidence                                                        467889999999999999999999999998  8899


Q ss_pred             EEEeecccccccCCCCccc-----cccccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCC
Q 045449          712 AHISDFGIAKLLSGEDQLS-----KQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       712 ~kl~DfGla~~~~~~~~~~-----~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      +||+|||+|+.+.......     ......||+.|+|||++.+..++.++|||||||++|++++|..||.+.
T Consensus       193 ~kl~DFG~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~Pf~~~  264 (364)
T 3op5_A          193 VYLVDYGLAYRYCPEGVHKAYAADPKRCHDGTIEFTSIDAHNGVAPSRRGDLEILGYCMIQWLTGHLPWEDN  264 (364)
T ss_dssp             EEECCCTTCEESSGGGCCCCSSCCSSCCCCCCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSCCTTGGG
T ss_pred             EEEEECCcceecccCCcccccccCcccccCCCCCccCHHHhCCCCCCchhhHHHHHHHHHHHHhCCCCcccc
Confidence            9999999998764332111     113345999999999999999999999999999999999999999853

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A*

Probab=99.87  E-value=1.8e-23  Score=228.33  Aligned_cols=152  Identities=26%  Similarity=0.334  Sum_probs=124.9

Q ss_pred             hccCCccceeeccC------------CeEEEEEEehHhh--HHHHHHHHHHHHHHhhcchhhHHH---------------
Q 045449          627 TDRFSENNLIGIGN------------GMEVAVKVFHQQY--ERALKSFEDECEVRKRIRHRNLVK---------------  677 (823)
Q Consensus       627 t~~f~~~~~lg~g~------------~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~---------------  677 (823)
                      .++|...+.||.|+            |+.||||++....  ......+.+|++++++++||||++               
T Consensus        16 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~   95 (351)
T 3mi9_A           16 VSKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKASPYNRC   95 (351)
T ss_dssp             GGGEEEEEECSSCSTTSEEEEEETTTCCEEEEEECCCSSCSSSSCHHHHHHHHHHHHCCCTTBCCEEEEEEEC-------
T ss_pred             ccceeEEEEEecCCCcEEEEEEECCCCCEEEEEEEecccccccchHHHHHHHHHHHhccCCCcccHhheeeccccccccC
Confidence            35777788888875            6679999885432  222357889999999999999986               


Q ss_pred             ---------------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccC
Q 045449          678 ---------------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLS  724 (823)
Q Consensus       678 ---------------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~  724 (823)
                                                       ++.|++.+|+|+|+.||+||||||+||+++.++.+||+|||+|+...
T Consensus        96 ~~~~~lv~e~~~~~l~~~l~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~a~~~~  175 (351)
T 3mi9_A           96 KGSIYLVFDFCEHDLAGLLSNVLVKFTLSEIKRVMQMLLNGLYYIHRNKILHRDMKAANVLITRDGVLKLADFGLARAFS  175 (351)
T ss_dssp             -CEEEEEEECCSEEHHHHHHCTTSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEECC
T ss_pred             CceEEEEEeccCCCHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHCCeeCCCCCHHHEEEcCCCCEEEccchhccccc
Confidence                                             36788999999999999999999999999999999999999998764


Q ss_pred             CCCc--cccccccccCCCcCcccccCC-CccccccceehhhhhhccccCCCCCcCCC
Q 045449          725 GEDQ--LSKQTQTLATIGYMAPEYGTK-GRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       725 ~~~~--~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      ....  ........||+.|+|||++.+ ..++.++||||+||+++++++|..||.+.
T Consensus       176 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~  232 (351)
T 3mi9_A          176 LAKNSQPNRYTNRVVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGN  232 (351)
T ss_dssp             CCSSSSCCCCCSSCSCGGGCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred             ccccccccccCCcccccCccCchhhcCCCCCCcHhHHHHHHHHHHHHHhCCCCCCCC
Confidence            3221  122345678999999998876 45899999999999999999999998764

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*

Probab=99.87  E-value=2.8e-23  Score=224.95  Aligned_cols=149  Identities=28%  Similarity=0.388  Sum_probs=119.7

Q ss_pred             ccCCccceeeccC------------CeEEEEEEehHhh--HHHHHHHHHHHHHHhhcchhhHHH----------------
Q 045449          628 DRFSENNLIGIGN------------GMEVAVKVFHQQY--ERALKSFEDECEVRKRIRHRNLVK----------------  677 (823)
Q Consensus       628 ~~f~~~~~lg~g~------------~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~----------------  677 (823)
                      ++|...+.||.|+            +..||||++....  ....+.+.+|++++++++||||++                
T Consensus        25 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e  104 (331)
T 4aaa_A           25 EKYENLGLVGEGSYGMVMKCRNKDTGRIVAIKKFLESDDDKMVKKIAMREIKLLKQLRHENLVNLLEVCKKKKRWYLVFE  104 (331)
T ss_dssp             GGEEEEEEGGGGTTSSEEEEEETTTCCEEEEEEEESCSSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             hhheeeeEEeecCCEEEEEEEECCCCceEEEEEEecCCCchHHHHHHHHHHHHHhhCCCCCEeeEEEEeecCCEEEEEEe
Confidence            5677777888775            6679999885332  344567889999999999999998                


Q ss_pred             ------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCcccccc
Q 045449          678 ------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQT  733 (823)
Q Consensus       678 ------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~  733 (823)
                                              ++.|++.+|.|+|+.+|+||||||+||+++.++.+||+|||+++.......  ...
T Consensus       105 ~~~~~~l~~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~--~~~  182 (331)
T 4aaa_A          105 FVDHTILDDLELFPNGLDYQVVQKYLFQIINGIGFCHSHNIIHRDIKPENILVSQSGVVKLCDFGFARTLAAPGE--VYD  182 (331)
T ss_dssp             CCSEEHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTSCEEECCCTTC-------------
T ss_pred             cCCcchHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHCCEEccCcChheEEEcCCCcEEEEeCCCceeecCCcc--ccC
Confidence                                    367889999999999999999999999999999999999999987543322  223


Q ss_pred             ccccCCCcCcccccCCC-ccccccceehhhhhhccccCCCCCcCCC
Q 045449          734 QTLATIGYMAPEYGTKG-RVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       734 ~~~gt~~y~aPE~~~~~-~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      ...||+.|+|||++.+. .++.++||||+||++|++++|..||...
T Consensus       183 ~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~  228 (331)
T 4aaa_A          183 DEVATRWYRAPELLVGDVKYGKAVDVWAIGCLVTEMFMGEPLFPGD  228 (331)
T ss_dssp             -CCCCCTTCCHHHHTTCTTCCTHHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred             CCcCCccccCcccccCCCCcchHHHHHHHHHHHHHHHhCCCCCCCC
Confidence            45799999999998775 6899999999999999999999998664

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A

Probab=99.87  E-value=1.7e-23  Score=225.67  Aligned_cols=149  Identities=23%  Similarity=0.360  Sum_probs=126.5

Q ss_pred             hccCCccceeeccC------------CeEEEEEEehHhhH------HHHHHHHHHHHHHhhcchhhHHH-----------
Q 045449          627 TDRFSENNLIGIGN------------GMEVAVKVFHQQYE------RALKSFEDECEVRKRIRHRNLVK-----------  677 (823)
Q Consensus       627 t~~f~~~~~lg~g~------------~~~vavK~~~~~~~------~~~~~~~~E~~~l~~l~h~niv~-----------  677 (823)
                      .++|...+.||.|+            |..||||++.....      ...+.+.+|++++++++||||++           
T Consensus        11 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~   90 (321)
T 2a2a_A           11 EDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIEREVSILRQVLHHNVITLHDVYENRTDV   90 (321)
T ss_dssp             HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSSSCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEE
T ss_pred             hccEEEeeEeeecCCEEEEEEEECCCCeEEEEEEEecccccccccchhHHHHHHHHHHHHhCCCCCcceEEEEEecCCEE
Confidence            45688888899886            56799999864321      12467999999999999999998           


Q ss_pred             -----------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCC----cEEEeecccccccC
Q 045449          678 -----------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDM----VAHISDFGIAKLLS  724 (823)
Q Consensus       678 -----------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~----~~kl~DfGla~~~~  724 (823)
                                                   ++.|++.+|+|+|+.+|+||||||+||+++.++    .+||+|||+++...
T Consensus        91 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~aL~~lH~~~ivH~dikp~NIl~~~~~~~~~~~kl~Dfg~~~~~~  170 (321)
T 2a2a_A           91 VLILELVSGGELFDFLAQKESLSEEEATSFIKQILDGVNYLHTKKIAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHEIE  170 (321)
T ss_dssp             EEEECCCCSCBHHHHHHTCSCEEHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEESCTTSSSCCEEECCCTTCEECC
T ss_pred             EEEEEcCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCChHHEEEecCCCCcCCEEEccCccceecC
Confidence                                         467889999999999999999999999999887    79999999998765


Q ss_pred             CCCccccccccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCC
Q 045449          725 GEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       725 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      ....   .....||+.|+|||++.+..++.++||||+||+++++++|..||.+.
T Consensus       171 ~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~  221 (321)
T 2a2a_A          171 DGVE---FKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGD  221 (321)
T ss_dssp             TTCC---CCCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCS
T ss_pred             cccc---ccccCCCCCccCcccccCCCCCCccccHHHHHHHHHHHHCCCCCCCC
Confidence            4322   23457999999999999889999999999999999999999999664

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens}

Probab=99.87  E-value=3.9e-23  Score=220.91  Aligned_cols=152  Identities=22%  Similarity=0.309  Sum_probs=126.6

Q ss_pred             hccCCccceeeccC------------CeEEEEEEehHhhH----HHHHHHHHHHHHHhhcchhhHHH-------------
Q 045449          627 TDRFSENNLIGIGN------------GMEVAVKVFHQQYE----RALKSFEDECEVRKRIRHRNLVK-------------  677 (823)
Q Consensus       627 t~~f~~~~~lg~g~------------~~~vavK~~~~~~~----~~~~~~~~E~~~l~~l~h~niv~-------------  677 (823)
                      .++|...+.||.|+            +..||||++.....    ...+.+.+|++++++++||||++             
T Consensus         4 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~   83 (305)
T 2wtk_C            4 IGKYLMGDLLGEGSYGKVKEVLDSETLCRRAVKILKKKKLRRIPNGEANVKKEIQLLRRLRHKNVIQLVDVLYNEEKQKM   83 (305)
T ss_dssp             -CCBCCCCEEEECSSCEEEEEEBTTTCCEEEEEEECHHHHHHSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEECC---CE
T ss_pred             ccceeEeeEEecCCCeEEEEEEECCCCcEEEEEEeccccccccchhHHHHHHHHHHHHhcCCCCeeEEEEEEEcCCCCeE
Confidence            46788888999886            56799999976532    34578999999999999999998             


Q ss_pred             ------------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCC
Q 045449          678 ------------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGED  727 (823)
Q Consensus       678 ------------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~  727 (823)
                                                    ++.|++.+|+|+|+.+|+||||||+||+++.++.+||+|||+++......
T Consensus        84 ~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~~~i~H~dlkp~NIl~~~~~~~kl~dfg~~~~~~~~~  163 (305)
T 2wtk_C           84 YMVMEYCVCGMQEMLDSVPEKRFPVCQAHGYFCQLIDGLEYLHSQGIVHKDIKPGNLLLTTGGTLKISALGVAEALHPFA  163 (305)
T ss_dssp             EEEEECCSEEHHHHHHHSTTCSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCCTTCEECCTTC
T ss_pred             EEEehhccCCHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHHHCCeeecCCCcccEEEcCCCcEEeeccccccccCccc
Confidence                                          35688999999999999999999999999999999999999998765332


Q ss_pred             ccccccccccCCCcCcccccCCCc--cccccceehhhhhhccccCCCCCcCCC
Q 045449          728 QLSKQTQTLATIGYMAPEYGTKGR--VSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       728 ~~~~~~~~~gt~~y~aPE~~~~~~--~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      .........||+.|+|||++.+..  ++.++||||+||+++++.+|..||...
T Consensus       164 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~  216 (305)
T 2wtk_C          164 ADDTCRTSQGSPAFQPPEIANGLDTFSGFKVDIWSAGVTLYNITTGLYPFEGD  216 (305)
T ss_dssp             SSCEECCCCSCGGGCCHHHHTCCSCEESHHHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred             cccccccCCCCCCCcChhhccCcccCCcchhhHHHHHHHHHHHHhCCCCCCCc
Confidence            222334567999999999987643  478999999999999999999998764

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A*

Probab=99.87  E-value=3.6e-23  Score=220.01  Aligned_cols=149  Identities=23%  Similarity=0.320  Sum_probs=127.4

Q ss_pred             ccCCccceeeccC------------CeEEEEEEehHhh---HHHHHHHHHHHHHHhhcchhhHHH---------------
Q 045449          628 DRFSENNLIGIGN------------GMEVAVKVFHQQY---ERALKSFEDECEVRKRIRHRNLVK---------------  677 (823)
Q Consensus       628 ~~f~~~~~lg~g~------------~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~---------------  677 (823)
                      ++|...+.||+|+            +..||+|++....   ....+.+.+|++++++++||||++               
T Consensus        15 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~   94 (294)
T 2rku_A           15 RRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDNDFVFVVL   94 (294)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             cceEEEEEEeecCCEEEEEEEECCCCceEEEEEechhhccCHHHHHHHHHHHHHHHhCCCCCEeeeeeeeccCCEEEEEE
Confidence            5677788888886            5679999986542   445678999999999999999998               


Q ss_pred             -------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccc
Q 045449          678 -------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQ  732 (823)
Q Consensus       678 -------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~  732 (823)
                                               ++.|++++|+|+|+.+|+||||||+||+++.++.+||+|||+++.......  ..
T Consensus        95 e~~~~~~L~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~--~~  172 (294)
T 2rku_A           95 ELCRRRSLLELHKRRKALTEPEARYYLRQIVLGCQYLHRNRVIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYDGE--RK  172 (294)
T ss_dssp             ECCTTCBHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTCEECCSTTC--CB
T ss_pred             ecCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCChHhEEEcCCCCEEEEeccCceecccCcc--cc
Confidence                                     367889999999999999999999999999999999999999987643222  22


Q ss_pred             cccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCC
Q 045449          733 TQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       733 ~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      ....||+.|+|||++.+..++.++||||+||+++++++|..||...
T Consensus       173 ~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~  218 (294)
T 2rku_A          173 KVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETS  218 (294)
T ss_dssp             CCCCSCCSSCCHHHHTTSCBCTHHHHHHHHHHHHHHHHSSCTTCCS
T ss_pred             ccccCCCCcCCcchhccCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Confidence            3457999999999999888999999999999999999999998764

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C

Probab=99.86  E-value=4.5e-23  Score=228.99  Aligned_cols=143  Identities=26%  Similarity=0.344  Sum_probs=112.6

Q ss_pred             ccCCcc-ceeeccC------------CeEEEEEEehHhhHHHHHHHHHHHHHHhh-cchhhHHH----------------
Q 045449          628 DRFSEN-NLIGIGN------------GMEVAVKVFHQQYERALKSFEDECEVRKR-IRHRNLVK----------------  677 (823)
Q Consensus       628 ~~f~~~-~~lg~g~------------~~~vavK~~~~~~~~~~~~~~~E~~~l~~-l~h~niv~----------------  677 (823)
                      ++|... ++||.|+            +..||||++...     ..+.+|++++.+ .+||||++                
T Consensus        61 ~~y~~~~~~LG~G~~g~V~~~~~~~~~~~vAiK~~~~~-----~~~~~E~~~~~~~~~hp~iv~l~~~~~~~~~~~~~~~  135 (400)
T 1nxk_A           61 DDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDC-----PKARREVELHWRASQCPHIVRIVDVYENLYAGRKCLL  135 (400)
T ss_dssp             GTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECS-----HHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEE
T ss_pred             ccceeccceeeeccCeEEEEEEECCCCCEEEEEEeCcc-----hhHHHHHHHHHHhcCCCCcceEeEEEeecccCCcEEE
Confidence            344443 5788875            567999999643     356788888754 48999987                


Q ss_pred             ------------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCC---CCcEEEeecccccccC
Q 045449          678 ------------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDE---DMVAHISDFGIAKLLS  724 (823)
Q Consensus       678 ------------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~---~~~~kl~DfGla~~~~  724 (823)
                                                    ++.|++.+|+|+|+.+|+||||||+|||++.   ++.+||+|||+++...
T Consensus       136 lv~E~~~gg~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDlkp~Nill~~~~~~~~~kl~DFG~a~~~~  215 (400)
T 1nxk_A          136 IVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHSINIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETT  215 (400)
T ss_dssp             EEEECCCSEEHHHHHHCC---CCBHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESSSSTTCCEEECCCTTCEECC
T ss_pred             EEEEeCCCCcHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHCCccccCcCcceEEEecCCCCccEEEEecccccccC
Confidence                                          3678899999999999999999999999997   7899999999998754


Q ss_pred             CCCccccccccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCC
Q 045449          725 GEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       725 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      ...   .....+||+.|+|||++.+..|+.++|||||||++|++++|..||...
T Consensus       216 ~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~  266 (400)
T 1nxk_A          216 SHN---SLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSN  266 (400)
T ss_dssp             --------------CTTCCGGGSCCCCSSSHHHHHHHHHHHHHHHHSSCSCCCC
T ss_pred             CCC---ccccCCCCCCccCHhhcCCCCCCCcccHHHHHHHHHHHHhCCCCCCCC
Confidence            322   234567999999999999999999999999999999999999999654

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*

Probab=99.86  E-value=1.2e-23  Score=223.30  Aligned_cols=152  Identities=24%  Similarity=0.290  Sum_probs=116.8

Q ss_pred             ccCCccceeeccC---------------CeEEEEEEehHhh---HHHHHHHHHHHHHHhhcchhhHHH------------
Q 045449          628 DRFSENNLIGIGN---------------GMEVAVKVFHQQY---ERALKSFEDECEVRKRIRHRNLVK------------  677 (823)
Q Consensus       628 ~~f~~~~~lg~g~---------------~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~------------  677 (823)
                      ++|...+.||.|+               +..||||+++...   ....+.|.+|++++++++||||++            
T Consensus        18 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~   97 (291)
T 1u46_A           18 KDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLTPPMKM   97 (291)
T ss_dssp             GGEEEEEECC----CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSCEE
T ss_pred             hHeeeeeeecCCCceeEEEEEeccCCCceeEEEEEEEccCccCCHHHHHHHHHHHHHHHhCCCCCcccEEEEEccCCcee
Confidence            4566666666654               2258999987542   345578999999999999999998            


Q ss_pred             ----------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCcc
Q 045449          678 ----------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQL  729 (823)
Q Consensus       678 ----------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~  729 (823)
                                                  ++.|++++|+|+|+.+|+||||||+||+++.++.+||+|||+++........
T Consensus        98 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~~~~~~  177 (291)
T 1u46_A           98 VTELAPLGSLLDRLRKHQGHFLLGTLSRYAVQVAEGMGYLESKRFIHRDLAARNLLLATRDLVKIGDFGLMRALPQNDDH  177 (291)
T ss_dssp             EEECCTTCBHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEEEETTEEEECCCTTCEECCC-CCE
T ss_pred             eEecccCCCHHHHHHhccCCcCHHHHHHHHHHHHHHHHHHHhCCcccCCCchheEEEcCCCCEEEccccccccccccccc
Confidence                                        3568899999999999999999999999999999999999999876543321


Q ss_pred             -ccccccccCCCcCcccccCCCccccccceehhhhhhccccC-CCCCcCCCc
Q 045449          730 -SKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKET-RSMTVGETC  779 (823)
Q Consensus       730 -~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~-~~~~~~~~~  779 (823)
                       .......+|+.|+|||++.+..++.++||||+||+++++++ |..||....
T Consensus       178 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~  229 (291)
T 1u46_A          178 YVMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGLN  229 (291)
T ss_dssp             EEC-----CCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCTTTTCC
T ss_pred             hhhhccCCCCceeeCchhhcCCCCCchhhHHHHHHHHHHHHhCCCCCcccCC
Confidence             12234567889999999988889999999999999999999 999987643

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.86  E-value=3.3e-21  Score=210.19  Aligned_cols=241  Identities=15%  Similarity=0.113  Sum_probs=156.8

Q ss_pred             cEEEccCCcccccCCcccccCCCCccEEEeeccccccccCccccCCCCCCeEEeecccccccCC-CccCCCcccCc-ccc
Q 045449          231 KEISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSITNSSKLSDLELGENLFSGFIP-NTIGNLRNLEF-GNI  308 (823)
Q Consensus       231 ~~L~Ls~N~l~g~lp~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~-L~L  308 (823)
                      ++++.++|+++ .+|..+   .+++++|+|++|+|+...+.+|.++++|++|+|++|++.+.+| .+|.++++|.. +.+
T Consensus        12 ~~v~C~~~~Lt-~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~   87 (350)
T 4ay9_X           12 RVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   87 (350)
T ss_dssp             TEEEEESTTCC-SCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred             CEEEecCCCCC-ccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence            45777777777 677655   3467778888888775555667777888888888887765444 46777777654 556


Q ss_pred             cCccccCCCCcccccccccCCCCceEEEeecCCCCccCCccccccccccceEEecC-CcceeccCccccCcc-cccEEEc
Q 045449          309 ADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGILPKSIGNFSLSLETILMAN-CSISGNIPQVVGNLS-NLLVLEL  386 (823)
Q Consensus       309 ~~N~l~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~-N~l~~~~p~~~~~l~-~L~~L~L  386 (823)
                      +.|+++..     .+..|.++++|++|++++|.+++..+..+... ..+..+++.+ |++....+..|..+. .++.|+|
T Consensus        88 ~~N~l~~l-----~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~-~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L  161 (350)
T 4ay9_X           88 KANNLLYI-----NPEAFQNLPNLQYLLISNTGIKHLPDVHKIHS-LQKVLLDIQDNINIHTIERNSFVGLSFESVILWL  161 (350)
T ss_dssp             EETTCCEE-----CTTSBCCCTTCCEEEEEEECCSSCCCCTTCCB-SSCEEEEEESCTTCCEECTTSSTTSBSSCEEEEC
T ss_pred             cCCccccc-----CchhhhhccccccccccccccccCCchhhccc-chhhhhhhccccccccccccchhhcchhhhhhcc
Confidence            66777765     33467777778888888888776666555554 4666777754 566666666666654 5777788


Q ss_pred             ccCcCCCCchhcccccCCCCEEEccC-CCCCCcchHhhhcCCCCCEEEcccCcCcccccccccCCCCCCeEeccCC-ccc
Q 045449          387 GGNNLTGPIPVTFSQLQTLQAFDLTR-NKLAGPITDELCHLARLHSLVLQGNKFSGSIPSCLGNLTSVRVLYLGLN-IFT  464 (823)
Q Consensus       387 s~N~l~g~~p~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N-~l~  464 (823)
                      ++|+|+. +|.......+|+.|++++ |.++...+..|.++++|+.|||++|+|+...+..|.+   |+.|.+.++ +++
T Consensus       162 ~~N~i~~-i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~---L~~L~~l~~~~l~  237 (350)
T 4ay9_X          162 NKNGIQE-IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLEN---LKKLRARSTYNLK  237 (350)
T ss_dssp             CSSCCCE-ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCTT---CCEEECTTCTTCC
T ss_pred             ccccccC-CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhcc---chHhhhccCCCcC
Confidence            8888773 444444456777777764 5555444455777777888888888877444444444   344443333 333


Q ss_pred             cccchhhhccCCCcEEecccccc
Q 045449          465 SVLSSTIWNLKDILFIDVSSNFL  487 (823)
Q Consensus       465 ~~~p~~~~~l~~L~~LdLs~N~l  487 (823)
                       .+| .+..+++|+.++++++.-
T Consensus       238 -~lP-~l~~l~~L~~l~l~~~~~  258 (350)
T 4ay9_X          238 -KLP-TLEKLVALMEASLTYPSH  258 (350)
T ss_dssp             -CCC-CTTTCCSCCEEECSCHHH
T ss_pred             -cCC-CchhCcChhhCcCCCCcc
Confidence             344 366777777777776543

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*

Probab=99.86  E-value=3.1e-23  Score=224.91  Aligned_cols=150  Identities=23%  Similarity=0.317  Sum_probs=127.9

Q ss_pred             hccCCccceeeccC------------CeEEEEEEehHhh---HHHHHHHHHHHHHHhhcchhhHHH--------------
Q 045449          627 TDRFSENNLIGIGN------------GMEVAVKVFHQQY---ERALKSFEDECEVRKRIRHRNLVK--------------  677 (823)
Q Consensus       627 t~~f~~~~~lg~g~------------~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~--------------  677 (823)
                      .++|...+.||+|+            +..||+|++....   ....+.+.+|++++++++||||++              
T Consensus        40 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv  119 (335)
T 2owb_A           40 RRRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDNDFVFVV  119 (335)
T ss_dssp             TEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             CCceEEEEEEeeCCCeEEEEEEECCCCCEEEEEEechhhhcCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCeEEEE
Confidence            35777788888885            5679999986542   445678999999999999999998              


Q ss_pred             --------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCcccc
Q 045449          678 --------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSK  731 (823)
Q Consensus       678 --------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~  731 (823)
                                                ++.|++++|+|+|+.+|+||||||+||+++.++.+||+|||+++.......  .
T Consensus       120 ~e~~~~~~L~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~--~  197 (335)
T 2owb_A          120 LELCRRRSLLELHKRRKALTEPEARYYLRQIVLGCQYLHRNRVIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYDGE--R  197 (335)
T ss_dssp             ECCCTTCBHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECTTCCEEECCCTTCEECCSTTC--C
T ss_pred             EecCCCCCHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCCEecCCCchhEEEcCCCCEEEeeccCceecccCcc--c
Confidence                                      367889999999999999999999999999999999999999987643222  2


Q ss_pred             ccccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCC
Q 045449          732 QTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       732 ~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      .....||+.|+|||++.+..++.++|||||||++|++++|..||...
T Consensus       198 ~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~  244 (335)
T 2owb_A          198 KKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETS  244 (335)
T ss_dssp             BCCCCSCCSSCCHHHHHTSCBCTHHHHHHHHHHHHHHHHSSCTTCCS
T ss_pred             ccccCCCccccCHHHhccCCCCchhhHHHHHHHHHHHHHCcCCCCCC
Confidence            23457999999999998888999999999999999999999998764

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*

Probab=99.86  E-value=1.4e-23  Score=226.96  Aligned_cols=151  Identities=26%  Similarity=0.316  Sum_probs=127.2

Q ss_pred             ccCCccceeeccC----------------CeEEEEEEehHhhHHHHHHHHHHHHHHhhcchhhHHH--------------
Q 045449          628 DRFSENNLIGIGN----------------GMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVK--------------  677 (823)
Q Consensus       628 ~~f~~~~~lg~g~----------------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~--------------  677 (823)
                      ++|...+.||.|+                +..||||++........+.|.+|++++++++||||++              
T Consensus        23 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~  102 (327)
T 3lxl_A           23 RHLKYISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQREIQILKALHSDFIVKYRGVSYGPGRQSLR  102 (327)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEECTTSSSCSEEEEEEEESSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSSCEEE
T ss_pred             hhhhhhhhccCCCCeEEEEEEeccCCCCcceEEEEEEeccCCHHHHHHHHHHHHHHHhcCCCceeEEEEEEecCCCceEE
Confidence            4566667777664                4669999998776666788999999999999999998              


Q ss_pred             -----------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCc
Q 045449          678 -----------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQ  728 (823)
Q Consensus       678 -----------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~  728 (823)
                                                   ++.|++.+|+|+|+.+|+||||||+||+++.++.+||+|||+++.......
T Consensus       103 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~~~~~~~~~~  182 (327)
T 3lxl_A          103 LVMEYLPSGCLRDFLQRHRARLDASRLLLYSSQICKGMEYLGSRRCVHRDLAARNILVESEAHVKIADFGLAKLLPLDKD  182 (327)
T ss_dssp             EEEECCTTCBHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEEETTEEEECCGGGCEECCTTCS
T ss_pred             EEEeecCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhCCccCCCCChhhEEECCCCCEEEcccccceecccCCc
Confidence                                         356889999999999999999999999999999999999999987654332


Q ss_pred             c-ccccccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCC
Q 045449          729 L-SKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       729 ~-~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      . .......||+.|+|||++.+..++.++||||+||+++++++|..||...
T Consensus       183 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~g~~p~~~~  233 (327)
T 3lxl_A          183 YYVVREPGQSPIFWYAPESLSDNIFSRQSDVWSFGVVLYELFTYCDKSCSP  233 (327)
T ss_dssp             EEECSSCCCSCGGGSCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSH
T ss_pred             cceeeccCCccccccCHHHhccCCCChHHhHHHHHHHHHHHHhCCCCCccc
Confidence            1 1223456888999999998888999999999999999999999888654

>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A

Probab=99.86  E-value=4.6e-23  Score=226.86  Aligned_cols=147  Identities=28%  Similarity=0.345  Sum_probs=123.0

Q ss_pred             hccCCccceeeccC------------CeEEEEEEehHh--hHHHHHHHHHHHHHHhhcchhhHHH---------------
Q 045449          627 TDRFSENNLIGIGN------------GMEVAVKVFHQQ--YERALKSFEDECEVRKRIRHRNLVK---------------  677 (823)
Q Consensus       627 t~~f~~~~~lg~g~------------~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~---------------  677 (823)
                      .++|...+.||.|+            |..||||++...  .....+.+.+|++++++++||||++               
T Consensus        41 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~  120 (371)
T 4exu_A           41 PKTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNFY  120 (371)
T ss_dssp             ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSSTTCC
T ss_pred             cccEEEEeEEecCCCeEEEEEEECCCCCEEEEEEecccccchhHHHHHHHHHHHHHhcCCCCchhhhhheeccCCcccce
Confidence            46778888899886            677999999753  2445678999999999999999997               


Q ss_pred             ----------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCcc
Q 045449          678 ----------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQL  729 (823)
Q Consensus       678 ----------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~  729 (823)
                                                  ++.|++.+|+|+|+.+|+||||||+||+++.++.+||+|||+++.....   
T Consensus       121 ~~~lv~e~~~~~l~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dikp~NIll~~~~~~kL~Dfg~a~~~~~~---  197 (371)
T 4exu_A          121 DFYLVMPFMQTDLQKIMGMEFSEEKIQYLVYQMLKGLKYIHSAGVVHRDLKPGNLAVNEDCELKILDFGLARHADAE---  197 (371)
T ss_dssp             CCEEEEECCCEEHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTCCEEECSTTCC---------
T ss_pred             eEEEEEccccccHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHCCCcCCCcCHHHeEECCCCCEEEEecCcccccccC---
Confidence                                        3578999999999999999999999999999999999999999865432   


Q ss_pred             ccccccccCCCcCcccccCC-CccccccceehhhhhhccccCCCCCcCCC
Q 045449          730 SKQTQTLATIGYMAPEYGTK-GRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       730 ~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                        ....+||+.|+|||++.+ ..++.++||||+||+++++++|..||.+.
T Consensus       198 --~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~  245 (371)
T 4exu_A          198 --MTGYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKTLFKGK  245 (371)
T ss_dssp             ----CTTCCCTTSCHHHHSCCSCCCTTHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred             --cCCcccCccccCHHHhcCCCCCCcHHhHHHHHHHHHHHHhCCCCCCCC
Confidence              234578999999999877 67899999999999999999999999764

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7

Probab=99.86  E-value=9.2e-24  Score=232.15  Aligned_cols=149  Identities=24%  Similarity=0.318  Sum_probs=111.8

Q ss_pred             CCccceeeccC---------------CeEEEEEEehHhh-HHHHHHHHHHHHHHhhcchhhHHH----------------
Q 045449          630 FSENNLIGIGN---------------GMEVAVKVFHQQY-ERALKSFEDECEVRKRIRHRNLVK----------------  677 (823)
Q Consensus       630 f~~~~~lg~g~---------------~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~----------------  677 (823)
                      |...+.||+|+               +..||||++.... ....++|.+|+.++++++||||++                
T Consensus        91 ~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~~lv~  170 (373)
T 3c1x_A           91 VHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVL  170 (373)
T ss_dssp             EEEEEEEECCSSSEEEEEEEEETTTEEEEEEEEECCSCSCSHHHHHHHHHHTTSTTCCCTTBCCCCEEECCCSSCCEEEE
T ss_pred             eecCcEeeeCCCeEEEEEEEECCCCcEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEEcCCCCeEEEE
Confidence            45567888886               1247999886432 345678999999999999999998                


Q ss_pred             --------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCcc--
Q 045449          678 --------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQL--  729 (823)
Q Consensus       678 --------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~--  729 (823)
                                                ++.|++++|+|+|+.+|+||||||+||+++.++.+||+|||+++........  
T Consensus       171 e~~~~g~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~~~~kL~DFG~a~~~~~~~~~~~  250 (373)
T 3c1x_A          171 PYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKFLASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSV  250 (373)
T ss_dssp             ECCTTCBHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTCCEEECCC--------------
T ss_pred             ECCCCCCHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHHHCCEecCccchheEEECCCCCEEEeeccccccccccccccc
Confidence                                      3568899999999999999999999999999999999999999876433211  


Q ss_pred             ccccccccCCCcCcccccCCCccccccceehhhhhhccccC-CCCCcCCC
Q 045449          730 SKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKET-RSMTVGET  778 (823)
Q Consensus       730 ~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~-~~~~~~~~  778 (823)
                      .......+|+.|+|||++.+..++.++|||||||++|++++ +..||.+.
T Consensus       251 ~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlG~il~ellt~~~~p~~~~  300 (373)
T 3c1x_A          251 HNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDV  300 (373)
T ss_dssp             -------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTS
T ss_pred             cccCCCCCcccccChHHhcCCCCCcHHHHHHHHHHHHHHHhCcCCCCCCC
Confidence            11234567889999999998899999999999999999999 56666553

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A

Probab=99.86  E-value=1.5e-23  Score=229.75  Aligned_cols=148  Identities=28%  Similarity=0.345  Sum_probs=114.2

Q ss_pred             hccCCccceeeccC------------CeEEEEEEehHhhHHHHHHHHHHHHHHhhcchhhHHH-----------------
Q 045449          627 TDRFSENNLIGIGN------------GMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVK-----------------  677 (823)
Q Consensus       627 t~~f~~~~~lg~g~------------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~-----------------  677 (823)
                      .++|...+.||.|+            ++.||||++..... ..+.+.+|+.++++++||||++                 
T Consensus        19 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~   97 (361)
T 3uc3_A           19 SDRYDFVKDIGSGNFGVARLMRDKLTKELVAVKYIERGAA-IDENVQREIINHRSLRHPNIVRFKEVILTPTHLAIIMEY   97 (361)
T ss_dssp             TTTEEEEEEESSSTTSSEEEEEETTTCCEEEEEEEESSTT-SCHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEEC
T ss_pred             CCcEEEEEEeccCCCEEEEEEEECCCCcEEEEEEEecCcc-ccHHHHHHHHHHHhCCCCCCCcEEEEEeeCCEEEEEEEe
Confidence            46788888888886            56799999965432 2356889999999999999998                 


Q ss_pred             -----------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCc--EEEeecccccccCCCCccccc
Q 045449          678 -----------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMV--AHISDFGIAKLLSGEDQLSKQ  732 (823)
Q Consensus       678 -----------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~--~kl~DfGla~~~~~~~~~~~~  732 (823)
                                             ++.|++.+|+|+|+.+|+||||||+||+++.++.  +||+|||+|+......   ..
T Consensus        98 ~~~~~L~~~l~~~~~~~~~~~~~i~~ql~~~L~~LH~~~ivH~Dlkp~Nill~~~~~~~~kl~Dfg~a~~~~~~~---~~  174 (361)
T 3uc3_A           98 ASGGELYERICNAGRFSEDEARFFFQQLLSGVSYCHSMQICHRDLKLENTLLDGSPAPRLKICDFGYSKSSVLHS---QP  174 (361)
T ss_dssp             CCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTCCSCCCCGGGEEECSSSSCCEEECCCCCC------------
T ss_pred             CCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEEcCCCCceEEEeecCccccccccC---CC
Confidence                                   4678999999999999999999999999987665  9999999998543222   22


Q ss_pred             cccccCCCcCcccccCCCccccc-cceehhhhhhccccCCCCCcCCC
Q 045449          733 TQTLATIGYMAPEYGTKGRVSTR-GDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       733 ~~~~gt~~y~aPE~~~~~~~~~~-~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      ...+||+.|+|||++.+..+..+ +||||+||++|++++|..||...
T Consensus       175 ~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~  221 (361)
T 3uc3_A          175 KSTVGTPAYIAPEVLLRQEYDGKIADVWSCGVTLYVMLVGAYPFEDP  221 (361)
T ss_dssp             ------CTTSCHHHHHCSSCCHHHHHHHHHHHHHHHHHHSSCSCC--
T ss_pred             CCCcCCCCcCChhhhcCCCCCCCeeeeehhHHHHHHHHhCCCCCCCC
Confidence            34579999999999988877655 89999999999999999999764

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*

Probab=99.86  E-value=1.5e-23  Score=226.89  Aligned_cols=153  Identities=27%  Similarity=0.350  Sum_probs=117.1

Q ss_pred             HHHhccCCccceeeccC------------CeEEEEEEehHhh--HHHHHHHHHHHHHHhhcchhhHHH------------
Q 045449          624 LRATDRFSENNLIGIGN------------GMEVAVKVFHQQY--ERALKSFEDECEVRKRIRHRNLVK------------  677 (823)
Q Consensus       624 ~~at~~f~~~~~lg~g~------------~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~------------  677 (823)
                      ....++|...+.||.|+            +..||||++....  ....+.+.+|++++++++||||++            
T Consensus        30 ~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~  109 (329)
T 3gbz_A           30 ATSIDRYRRITKLGEGTYGEVYKAIDTVTNETVAIKRIRLEHEEEGVPGTAIREVSLLKELQHRNIIELKSVIHHNHRLH  109 (329)
T ss_dssp             --CGGGEEEEEEEEECSSSEEEEEEETTTTEEEEEEECCCCC--------CHHHHHHGGGCCCTTBCCEEEEEEETTEEE
T ss_pred             ccchhhEEEEEEEEecCCeEEEEEEECCCCceEEEEEEcccccccccchhHHHHHHHHHHcCCCCcceEEEEEecCCEEE
Confidence            34457888889999886            6679999996443  333467889999999999999998            


Q ss_pred             ---------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEe-----CCCCcEEEeecccccccCC
Q 045449          678 ---------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLL-----DEDMVAHISDFGIAKLLSG  725 (823)
Q Consensus       678 ---------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl-----~~~~~~kl~DfGla~~~~~  725 (823)
                                                 ++.|++.+|+|+|+.+|+||||||+||++     +.++.+||+|||+|+....
T Consensus       110 lv~e~~~~~L~~~~~~~~~~~~~~~~~i~~ql~~~l~~LH~~~ivH~Dlkp~NIll~~~~~~~~~~~kl~Dfg~a~~~~~  189 (329)
T 3gbz_A          110 LIFEYAENDLKKYMDKNPDVSMRVIKSFLYQLINGVNFCHSRRCLHRDLKPQNLLLSVSDASETPVLKIGDFGLARAFGI  189 (329)
T ss_dssp             EEEECCSEEHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEEC-----CCEEEECCTTHHHHHC-
T ss_pred             EEEecCCCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhCCEECCCCCHHHEEEecCCCCccceEEECcCCCccccCC
Confidence                                       46789999999999999999999999999     4556699999999987643


Q ss_pred             CCccccccccccCCCcCcccccCCC-ccccccceehhhhhhccccCCCCCcCCC
Q 045449          726 EDQLSKQTQTLATIGYMAPEYGTKG-RVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       726 ~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      ...  .....+||+.|+|||++.+. .++.++||||+||+++++++|..||...
T Consensus       190 ~~~--~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~  241 (329)
T 3gbz_A          190 PIR--QFTHEIITLWYRPPEILLGSRHYSTSVDIWSIACIWAEMLMKTPLFPGD  241 (329)
T ss_dssp             ------------CCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             ccc--ccCCCcCCccccCHHHhcCCCCCCcHHHHHHHHHHHHHHHHCCCCcCCC
Confidence            322  23445789999999998775 4899999999999999999999998664

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...

Probab=99.86  E-value=7.9e-23  Score=216.20  Aligned_cols=147  Identities=22%  Similarity=0.344  Sum_probs=125.5

Q ss_pred             ccCCccceeeccC------------CeEEEEEEehHhhH---HHHHHHHHHHHHHhhcchhhHHH---------------
Q 045449          628 DRFSENNLIGIGN------------GMEVAVKVFHQQYE---RALKSFEDECEVRKRIRHRNLVK---------------  677 (823)
Q Consensus       628 ~~f~~~~~lg~g~------------~~~vavK~~~~~~~---~~~~~~~~E~~~l~~l~h~niv~---------------  677 (823)
                      ++|...+.||.|+            +..||||++.....   ...+.+.+|++++++++||||++               
T Consensus        14 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~   93 (284)
T 2vgo_A           14 DDFDIGRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHLRHPNILRMYNYFHDRKRIYLML   93 (284)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             hhceeeheecCCCCeEEEEEEEcCCCcEEEEEEEcccccchHHHHHHHHHHHHHHhcCCCCCEeeEEEEEEcCCEEEEEE
Confidence            5677788888875            56799999965432   22467999999999999999998               


Q ss_pred             -------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccc
Q 045449          678 -------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQ  732 (823)
Q Consensus       678 -------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~  732 (823)
                                               ++.|++++|+|+|+.+|+||||||+||+++.++.+||+|||++.......    .
T Consensus        94 e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~kl~Dfg~~~~~~~~~----~  169 (284)
T 2vgo_A           94 EFAPRGELYKELQKHGRFDEQRSATFMEELADALHYCHERKVIHRDIKPENLLMGYKGELKIADFGWSVHAPSLR----R  169 (284)
T ss_dssp             CCCTTEEHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHTTTEECCCCSGGGEEECTTCCEEECCCTTCEECSSSC----B
T ss_pred             EeCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCceecCCCHHHEEEcCCCCEEEecccccccCcccc----c
Confidence                                     35788999999999999999999999999999999999999997654322    2


Q ss_pred             cccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCC
Q 045449          733 TQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       733 ~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      ....||+.|+|||++.+..++.++||||+||+++++++|..||...
T Consensus       170 ~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~  215 (284)
T 2vgo_A          170 RTMCGTLDYLPPEMIEGKTHDEKVDLWCAGVLCYEFLVGMPPFDSP  215 (284)
T ss_dssp             CCCCSCGGGCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCS
T ss_pred             ccccCCCCcCCHHHhccCCCCcccchhhHHHHHHHHHHCCCCCCCC
Confidence            3457999999999999989999999999999999999999999764

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...

Probab=99.86  E-value=1.2e-23  Score=237.72  Aligned_cols=150  Identities=25%  Similarity=0.442  Sum_probs=120.0

Q ss_pred             hccCCccceeeccC-----------CeEEEEEEehHhhHHHHHHHHHHHHHHhhcchhhHHH------------------
Q 045449          627 TDRFSENNLIGIGN-----------GMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVK------------------  677 (823)
Q Consensus       627 t~~f~~~~~lg~g~-----------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~------------------  677 (823)
                      .++|...+.||.|+           +..||||+++.... ..++|.+|++++++++||||++                  
T Consensus       183 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~iv~e~~~  261 (452)
T 1fmk_A          183 RESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTM-SPEAFLQEAQVMKKLRHEKLVQLYAVVSEEPIYIVTEYMS  261 (452)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEETTTEEEEEEECCTTSS-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSCEEEECCCT
T ss_pred             hhHceeeeeecCCCCeEEEEEEECCCceEEEEEeccCCC-CHHHHHHHHHHHHhCCCCCEeeEEEEEcCCceEEEehhhc
Confidence            35677778888886           35699999975432 2367999999999999999998                  


Q ss_pred             -----------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccc
Q 045449          678 -----------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQ  734 (823)
Q Consensus       678 -----------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~  734 (823)
                                             ++.|++++|+|+|+.+|+||||||+|||++.++.+||+|||+++....... .....
T Consensus       262 ~gsL~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~~~-~~~~~  340 (452)
T 1fmk_A          262 KGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEY-TARQG  340 (452)
T ss_dssp             TCBHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGGCEEECCCCTTC-------------
T ss_pred             CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCChhhEEECCCCCEEECCCccceecCCCce-ecccC
Confidence                                   356889999999999999999999999999999999999999987643221 22233


Q ss_pred             cccCCCcCcccccCCCccccccceehhhhhhccccC-CCCCcCCC
Q 045449          735 TLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKET-RSMTVGET  778 (823)
Q Consensus       735 ~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~-~~~~~~~~  778 (823)
                      ..+|+.|+|||++.++.++.++|||||||+++++++ |..||.+.
T Consensus       341 ~~~~~~y~aPE~~~~~~~~~~sDvwslG~~l~el~t~g~~P~~~~  385 (452)
T 1fmk_A          341 AKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGM  385 (452)
T ss_dssp             --CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTC
T ss_pred             CcccccccCHhHHhcCCCCccccHHhHHHHHHHHHhCCCCCCCCC
Confidence            457889999999988899999999999999999999 89998764

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A*

Probab=99.86  E-value=1.4e-23  Score=222.50  Aligned_cols=142  Identities=22%  Similarity=0.273  Sum_probs=119.5

Q ss_pred             ccCCccceeeccC------------C-------eEEEEEEehHhhHHHHHHHHHHHHHHhhcchhhHHH-----------
Q 045449          628 DRFSENNLIGIGN------------G-------MEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVK-----------  677 (823)
Q Consensus       628 ~~f~~~~~lg~g~------------~-------~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~-----------  677 (823)
                      ++|...+.||.|+            +       ..||+|++........+.|.+|++++++++||||++           
T Consensus         8 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~   87 (289)
T 4fvq_A            8 EDLIFNESLGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAHRNYSESFFEAASMMSKLSHKHLVLNYGVCVCGDEN   87 (289)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEEEEECGGGCEEEEEEEEEEECGGGGGGHHHHHHHHHHHHTSCCTTBCCEEEEECCTTCC
T ss_pred             hHeeeeeeeccCCCceEEEEEEecccccccccchhhhhhhcccccHHHHHHHHHHHHHHHhCCCCCEeEEEEEEEeCCCC
Confidence            4677778888876            1       459999997766666688999999999999999998           


Q ss_pred             ------------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCc--------EEEeeccc
Q 045449          678 ------------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMV--------AHISDFGI  719 (823)
Q Consensus       678 ------------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~--------~kl~DfGl  719 (823)
                                                    ++.|++.+|+|+|+.+|+||||||+||+++.++.        +||+|||+
T Consensus        88 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~ivH~Dlkp~NIll~~~~~~~~~~~~~~kl~Dfg~  167 (289)
T 4fvq_A           88 ILVQEFVKFGSLDTYLKKNKNCINILWKLEVAKQLAAAMHFLEENTLIHGNVCAKNILLIREEDRKTGNPPFIKLSDPGI  167 (289)
T ss_dssp             EEEEECCTTCBHHHHHHHTGGGCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEEEECCBGGGTBCCEEEECCCCS
T ss_pred             EEEEECCCCCCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHhhCCeECCCcCcceEEEecCCcccccccceeeeccCcc
Confidence                                          3578899999999999999999999999988776        99999999


Q ss_pred             ccccCCCCccccccccccCCCcCcccccCC-CccccccceehhhhhhccccCCCCCc
Q 045449          720 AKLLSGEDQLSKQTQTLATIGYMAPEYGTK-GRVSTRGDVCSFGIISGGKETRSMTV  775 (823)
Q Consensus       720 a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~S~Gvv~~~~~~~~~~~  775 (823)
                      ++.....      ....||+.|+|||++.+ ..++.++||||+||+++++++|..++
T Consensus       168 ~~~~~~~------~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~~~  218 (289)
T 4fvq_A          168 SITVLPK------DILQERIPWVPPECIENPKNLNLATDKWSFGTTLWEICSGGDKP  218 (289)
T ss_dssp             CTTTSCH------HHHHHTTTTSCHHHHHCGGGCCHHHHHHHHHHHHHHHHTTTCCT
T ss_pred             cccccCc------cccCCcCcccCHHHhCCCCCCCchhHHHHHHHHHHHHHcCCCCC
Confidence            9765322      23458999999999887 67899999999999999999965444

>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens}

Probab=99.86  E-value=1e-23  Score=227.67  Aligned_cols=149  Identities=25%  Similarity=0.305  Sum_probs=116.9

Q ss_pred             ccCCccceeeccC------------CeEEEEEEehHhhHH-HHHHHHHHHHHHhhcchhhHHH-----------------
Q 045449          628 DRFSENNLIGIGN------------GMEVAVKVFHQQYER-ALKSFEDECEVRKRIRHRNLVK-----------------  677 (823)
Q Consensus       628 ~~f~~~~~lg~g~------------~~~vavK~~~~~~~~-~~~~~~~E~~~l~~l~h~niv~-----------------  677 (823)
                      ++|...+.||.|+            +..||||++...... ....+.+|++++++++||||++                 
T Consensus         2 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~   81 (324)
T 3mtl_A            2 ETYIKLDKLGEGTYATVYKGKSKLTDNLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIIHTEKSLTLVFEY   81 (324)
T ss_dssp             CSEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECC------CCCCCCCHHHHSCCCCTTBCCEEEEEECSSCEEEEEEC
T ss_pred             CceEEEEEEcCCCCEEEEEEEECCCCcEEEEEEEecccccccchhHHHHHHHHHhcCCCCCCeeeeEEeeCCEEEEEecc
Confidence            4677778888886            567999998754322 2235678999999999999998                 


Q ss_pred             -----------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccc
Q 045449          678 -----------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQ  734 (823)
Q Consensus       678 -----------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~  734 (823)
                                             ++.|++.+|+|+|+.+|+||||||+||+++.++.+||+|||+++.......  ....
T Consensus        82 ~~~~l~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~~~~--~~~~  159 (324)
T 3mtl_A           82 LDKDLKQYLDDCGNIINMHNVKLFLFQLLRGLAYCHRQKVLHRDLKPQNLLINERGELKLADFGLARAKSIPTK--TYDN  159 (324)
T ss_dssp             CSEEHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTTEEESSCCGGGEEECTTCCEEECSSSEEECC-----------
T ss_pred             cccCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCccCCCcCHHHEEECCCCCEEEccCcccccccCCcc--cccc
Confidence                                   357899999999999999999999999999999999999999986543221  2334


Q ss_pred             cccCCCcCcccccCC-CccccccceehhhhhhccccCCCCCcCCC
Q 045449          735 TLATIGYMAPEYGTK-GRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       735 ~~gt~~y~aPE~~~~-~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      ..||+.|+|||++.+ ..++.++||||+||+++++++|..||.+.
T Consensus       160 ~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~  204 (324)
T 3mtl_A          160 EVVTLWYRPPDILLGSTDYSTQIDMWGVGCIFYEMATGRPLFPGS  204 (324)
T ss_dssp             ---CGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred             ccCcccccChhhhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence            578999999999876 56899999999999999999999999764

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...

Probab=99.86  E-value=1.8e-23  Score=221.62  Aligned_cols=152  Identities=24%  Similarity=0.390  Sum_probs=127.7

Q ss_pred             HhccCCccceeeccC------------CeEEEEEEehHhhHHHHHHHHHHHHHHhhcchhhHHH----------------
Q 045449          626 ATDRFSENNLIGIGN------------GMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVK----------------  677 (823)
Q Consensus       626 at~~f~~~~~lg~g~------------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~----------------  677 (823)
                      ..++|...+.||.|+            +..||||++.... ...+.|.+|++++++++||||++                
T Consensus        11 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e   89 (288)
T 3kfa_A           11 ERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDT-MEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITE   89 (288)
T ss_dssp             CGGGEEEEEESGGGTTCSEEEEEEGGGTEEEEEEEECSCS-THHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSEEEEEE
T ss_pred             cccceeEEeecCCCCceeEEEeEecCCCEEEEEEecCcCH-HHHHHHHHHHHHHHhCCCCCEeeEEEEEccCCCEEEEEE
Confidence            346777778888875            5679999997543 23478999999999999999998                


Q ss_pred             --------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCcccc
Q 045449          678 --------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSK  731 (823)
Q Consensus       678 --------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~  731 (823)
                                                ++.|++.+|+|+|+.+|+||||||+||+++.++.+||+|||+++....... ..
T Consensus        90 ~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~i~H~dikp~Nil~~~~~~~~l~Dfg~~~~~~~~~~-~~  168 (288)
T 3kfa_A           90 FMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTY-TA  168 (288)
T ss_dssp             CCTTEEHHHHHHHCCTTTSCHHHHHHHHHHHHHHHHHHHHHTCCCSCCSGGGEEECGGGCEEECCCCGGGTSCSSSS-EE
T ss_pred             cCCCCcHHHHHHhcccCCccHhHHHHHHHHHHHHHHHHHHCCccCCCCCcceEEEcCCCCEEEccCccceeccCCcc-cc
Confidence                                      356889999999999999999999999999999999999999987654332 22


Q ss_pred             ccccccCCCcCcccccCCCccccccceehhhhhhccccC-CCCCcCCCc
Q 045449          732 QTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKET-RSMTVGETC  779 (823)
Q Consensus       732 ~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~-~~~~~~~~~  779 (823)
                      .....+|+.|+|||++.+..++.++||||+||+++++++ |..||....
T Consensus       169 ~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~~g~~p~~~~~  217 (288)
T 3kfa_A          169 HAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGID  217 (288)
T ss_dssp             ETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCC
T ss_pred             ccCCccccCcCChhhhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCC
Confidence            344567889999999988899999999999999999999 888887643

>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A

Probab=99.86  E-value=2e-23  Score=222.13  Aligned_cols=150  Identities=23%  Similarity=0.263  Sum_probs=124.8

Q ss_pred             hccCCccceeeccC------------CeEEEEEEehHhhHHHHHHHHHHHHHHhhcchhhHHH-----------------
Q 045449          627 TDRFSENNLIGIGN------------GMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVK-----------------  677 (823)
Q Consensus       627 t~~f~~~~~lg~g~------------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~-----------------  677 (823)
                      .++|...+.||.|+            ++.||||++.....  .+++.+|++++++++|++++.                 
T Consensus         8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~lv~e   85 (296)
T 3uzp_A            8 GNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTK--HPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVME   85 (296)
T ss_dssp             TTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEEESCSS--CCHHHHHHHHHHHHTTSTTCCCEEEEEEETTEEEEEEE
T ss_pred             ccEEEEEEEEccCCCeEEEEEEEcCCCcEEEEEEecCCcc--hhHHHHHHHHHHHhhcCCCCCccccccCCCCceEEEEE
Confidence            46788888888875            67799999864432  246889999999999887665                 


Q ss_pred             ------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeC---CCCcEEEeecccccccCCCCcc-
Q 045449          678 ------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLD---EDMVAHISDFGIAKLLSGEDQL-  729 (823)
Q Consensus       678 ------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~---~~~~~kl~DfGla~~~~~~~~~-  729 (823)
                                              ++.|++.+|+|+|+.+|+||||||+||+++   .++.+||+|||+++........ 
T Consensus        86 ~~~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~dlkp~NIl~~~~~~~~~~kl~Dfg~~~~~~~~~~~~  165 (296)
T 3uzp_A           86 LLGPSLEDLFNFCSRKFSLKTVLLLADQMISRIEYIHSKNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDARTHQ  165 (296)
T ss_dssp             CCCCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECCGGGTTCEEECCCTTCEECBCTTTCC
T ss_pred             ecCCCHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHhCCeeeCCCCHHHeEEecCCCCCeEEEeeCCCccccccccccc
Confidence                                    467899999999999999999999999994   7889999999999876543321 


Q ss_pred             ----ccccccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCC
Q 045449          730 ----SKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       730 ----~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                          .......||+.|+|||++.+..++.++|||||||+++++++|+.||...
T Consensus       166 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~  218 (296)
T 3uzp_A          166 HIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGL  218 (296)
T ss_dssp             BCCCCCSCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSC
T ss_pred             ccccccccccccccccCChhhhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCc
Confidence                1124567999999999999999999999999999999999999999764

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...

Probab=99.86  E-value=3.4e-23  Score=224.51  Aligned_cols=151  Identities=28%  Similarity=0.381  Sum_probs=126.0

Q ss_pred             ccCCccceeeccC-------------------CeEEEEEEehHhh-HHHHHHHHHHHHHHhhc-chhhHHH---------
Q 045449          628 DRFSENNLIGIGN-------------------GMEVAVKVFHQQY-ERALKSFEDECEVRKRI-RHRNLVK---------  677 (823)
Q Consensus       628 ~~f~~~~~lg~g~-------------------~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l-~h~niv~---------  677 (823)
                      ++|...+.||.|+                   +..||||++.... ....+.+.+|+++++++ +||||++         
T Consensus        35 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~  114 (334)
T 2pvf_A           35 DKLTLGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQDG  114 (334)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTCSTTCC---CEEEEEECCTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS
T ss_pred             hHeEEeeEEeecCceeEEEeEeccccccccccceEEEEeeeccCCcHHHHHHHHHHHHHHHHhhcCCCEeeEEEEEccCC
Confidence            5777778888875                   2358999997543 45567899999999999 8999997         


Q ss_pred             -----------------------------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCC
Q 045449          678 -----------------------------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDM  710 (823)
Q Consensus       678 -----------------------------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~  710 (823)
                                                                     ++.|++++|+|+|+.+|+||||||+||+++.++
T Consensus       115 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~  194 (334)
T 2pvf_A          115 PLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQKCIHRDLAARNVLVTENN  194 (334)
T ss_dssp             CCEEEEECCTTCBHHHHHHTTSCTTCCSCC--------CCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTC
T ss_pred             ceEEEEECCCCCcHHHHHHHhccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCccceEEEcCCC
Confidence                                                           135788899999999999999999999999999


Q ss_pred             cEEEeecccccccCCCCccccccccccCCCcCcccccCCCccccccceehhhhhhccccC-CCCCcCCC
Q 045449          711 VAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKET-RSMTVGET  778 (823)
Q Consensus       711 ~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~-~~~~~~~~  778 (823)
                      .+||+|||+++...............+|+.|+|||++.+..++.++||||+||+++++++ |..||.+.
T Consensus       195 ~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~  263 (334)
T 2pvf_A          195 VMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGI  263 (334)
T ss_dssp             CEEECCCTTCEECTTTSSEECCSCCCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTC
T ss_pred             CEEEccccccccccccccccccCCCCcccceeChHHhcCCCcChHHHHHHHHHHHHHHHhCCCCCcCcC
Confidence            999999999987654433333344567889999999988889999999999999999998 99998764

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A

Probab=99.86  E-value=4.8e-23  Score=222.31  Aligned_cols=141  Identities=26%  Similarity=0.380  Sum_probs=100.9

Q ss_pred             cceeeccC------------CeEEEEEEehHhhHHHHHHHHHHHHHHhhcc-hhhHHH----------------------
Q 045449          633 NNLIGIGN------------GMEVAVKVFHQQYERALKSFEDECEVRKRIR-HRNLVK----------------------  677 (823)
Q Consensus       633 ~~~lg~g~------------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~----------------------  677 (823)
                      .+.||+|+            ++.||||++....   ...+.+|++++.++. ||||++                      
T Consensus        16 ~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~---~~~~~~e~~~l~~l~~h~niv~~~~~~~~~~~~~lv~e~~~~~~   92 (325)
T 3kn6_A           16 DKPLGEGSFSICRKCVHKKSNQAFAVKIISKRM---EANTQKEITALKLCEGHPNIVKLHEVFHDQLHTFLVMELLNGGE   92 (325)
T ss_dssp             SCCSEEETTEEEEEEEETTTCCEEEEEEEEGGG---HHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEECCCCSCB
T ss_pred             CCccccCCCeEEEEEEECCCCCEEEEEEEChhh---hhhHHHHHHHHHHhcCCCCeeEEEEEEEcCCEEEEEEEccCCCc
Confidence            35677775            6779999997653   256788999999997 999998                      


Q ss_pred             ------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCC---cEEEeecccccccCCCCccccccccc
Q 045449          678 ------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDM---VAHISDFGIAKLLSGEDQLSKQTQTL  736 (823)
Q Consensus       678 ------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~---~~kl~DfGla~~~~~~~~~~~~~~~~  736 (823)
                                        ++.|++.+|+|+|+.+|+||||||+||+++.++   .+||+|||+++.......  .....+
T Consensus        93 L~~~l~~~~~~~~~~~~~i~~qi~~~l~~LH~~~ivH~Dlkp~NIll~~~~~~~~~kl~Dfg~a~~~~~~~~--~~~~~~  170 (325)
T 3kn6_A           93 LFERIKKKKHFSETEASYIMRKLVSAVSHMHDVGVVHRDLKPENLLFTDENDNLEIKIIDFGFARLKPPDNQ--PLKTPC  170 (325)
T ss_dssp             HHHHHHHCSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEEEC----CEEEECCCTTCEECCC-----------
T ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCHHHEEEecCCCcccEEEeccccceecCCCCC--cccccC
Confidence                              467899999999999999999999999997655   899999999987543322  234467


Q ss_pred             cCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCC
Q 045449          737 ATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       737 gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      ||+.|+|||++.+..++.++||||+||++|++++|..||...
T Consensus       171 ~t~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~  212 (325)
T 3kn6_A          171 FTLHYAAPELLNQNGYDESCDLWSLGVILYTMLSGQVPFQSH  212 (325)
T ss_dssp             -------------CCCCHHHHHHHHHHHHHHHHHSSCTTC--
T ss_pred             CCcCccCHHHhcCCCCCCccchHHHHHHHHHHHhCCCCCCCC
Confidence            899999999999999999999999999999999999999753

>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*

Probab=99.86  E-value=5.1e-23  Score=224.91  Aligned_cols=152  Identities=28%  Similarity=0.338  Sum_probs=124.5

Q ss_pred             hccCCccceeeccC------------CeEEEEEEehHh-hHHHHHHHHHHHHHHhhcchhhHHH----------------
Q 045449          627 TDRFSENNLIGIGN------------GMEVAVKVFHQQ-YERALKSFEDECEVRKRIRHRNLVK----------------  677 (823)
Q Consensus       627 t~~f~~~~~lg~g~------------~~~vavK~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~----------------  677 (823)
                      .++|...+.||.|+            |..||||++... ......++.+|++++++++||||++                
T Consensus        10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~   89 (353)
T 2b9h_A           10 SSDFQLKSLLGEGAYGVVCSATHKPTGEIVAIKKIEPFDKPLFALRTLREIKILKHFKHENIITIFNIQRPDSFENFNEV   89 (353)
T ss_dssp             CTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCSTTCCCE
T ss_pred             ccceEEeeEEcCCCCeEEEEEEECCCCcEEEEEeecccccchHHHHHHHHHHHHHhCcCCCcCCeeeeecccccCccceE
Confidence            46788888899886            677999998643 2445568899999999999999986                


Q ss_pred             ---------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCcc-
Q 045449          678 ---------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQL-  729 (823)
Q Consensus       678 ---------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~-  729 (823)
                                                 ++.|++.+|+|+|+.+|+||||||+||+++.++.+||+|||+++........ 
T Consensus        90 ~lv~e~~~~~L~~~~~~~~~~~~~~~~~~~qi~~~L~~LH~~~ivH~Dlkp~Nil~~~~~~~kl~Dfg~a~~~~~~~~~~  169 (353)
T 2b9h_A           90 YIIQELMQTDLHRVISTQMLSDDHIQYFIYQTLRAVKVLHGSNVIHRDLKPSNLLINSNCDLKVCDFGLARIIDESAADN  169 (353)
T ss_dssp             EEEECCCSEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECTTCCEEECCCTTCEECC------
T ss_pred             EEEEeccCccHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeEEcCCCcEEEEecccccccccccccc
Confidence                                       3678899999999999999999999999999999999999999876432211 


Q ss_pred             -------ccccccccCCCcCcccccCC-CccccccceehhhhhhccccCCCCCcCCC
Q 045449          730 -------SKQTQTLATIGYMAPEYGTK-GRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       730 -------~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                             ......+||+.|+|||++.+ ..++.++||||+||+++++++|..||.+.
T Consensus       170 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~  226 (353)
T 2b9h_A          170 SEPTGQQSGMVEFVATRWYRAPEVMLTSAKYSRAMDVWSCGCILAELFLRRPIFPGR  226 (353)
T ss_dssp             ----------CCCCCCGGGCCHHHHHSCCCCCHHHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred             cCccccccchhhccccccccCCeeeccCCCccchhhHHHHHHHHHHHHhCCCCCCCC
Confidence                   01223578999999998654 67899999999999999999999998764

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A

Probab=99.86  E-value=9.7e-23  Score=216.22  Aligned_cols=144  Identities=28%  Similarity=0.364  Sum_probs=120.8

Q ss_pred             CCccceeeccC------------CeEEEEEEehHhh--HHHHHHHHHHHHHHhhcchhhHHH------------------
Q 045449          630 FSENNLIGIGN------------GMEVAVKVFHQQY--ERALKSFEDECEVRKRIRHRNLVK------------------  677 (823)
Q Consensus       630 f~~~~~lg~g~------------~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~------------------  677 (823)
                      |...+.||.|+            +..||+|++....  ....+.+.+|++++++++||||++                  
T Consensus        28 ~~~~~~lg~G~~g~Vy~~~~~~~~~~va~k~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~lv  107 (290)
T 1t4h_A           28 LKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVLV  107 (290)
T ss_dssp             EEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEESSSCEEEEEE
T ss_pred             EEeeeeccCCCCeEEEEeEecCCceEEEEEEecchhhCHHHHHHHHHHHHHHHhCCCCCeeeeeeeeccccCCCceEEEE
Confidence            55566788876            5569999986543  455678999999999999999997                  


Q ss_pred             --------------------------HHHHHHHHhhhcCCCC--EEeccCCCCCEEeC-CCCcEEEeecccccccCCCCc
Q 045449          678 --------------------------IISSSLEYLHFGHSIP--IIHCDLKPSNVLLD-EDMVAHISDFGIAKLLSGEDQ  728 (823)
Q Consensus       678 --------------------------~~~~~l~~L~~~h~~~--ivHrdlk~~NiLl~-~~~~~kl~DfGla~~~~~~~~  728 (823)
                                                ++.|++.+|+|+|+.+  |+||||||+||+++ .++.+||+|||+++...... 
T Consensus       108 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~i~H~dikp~Nil~~~~~~~~kl~Dfg~~~~~~~~~-  186 (290)
T 1t4h_A          108 TELMTSGTLKTYLKRFKVMKIKVLRSWCRQILKGLQFLHTRTPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKRASF-  186 (290)
T ss_dssp             EECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHTSSSCCCCSCCCGGGEEESSTTSCEEECCTTGGGGCCTTS-
T ss_pred             EEecCCCCHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHcCCCCEEECCCCHHHEEEECCCCCEEEeeCCCcccccccc-
Confidence                                      3578899999999999  99999999999998 78999999999997654322 


Q ss_pred             cccccccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCC
Q 045449          729 LSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       729 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                         .....||+.|+|||++. +.++.++||||+||+++++++|..||.+.
T Consensus       187 ---~~~~~~t~~y~aPE~~~-~~~~~~~Di~slG~~l~~l~~g~~pf~~~  232 (290)
T 1t4h_A          187 ---AKAVIGTPEFMAPEMYE-EKYDESVDVYAFGMCMLEMATSEYPYSEC  232 (290)
T ss_dssp             ---BEESCSSCCCCCGGGGG-TCCCTHHHHHHHHHHHHHHHHSSCTTTTC
T ss_pred             ---cccccCCcCcCCHHHHh-ccCCCcchHHHHHHHHHHHHhCCCCCCCc
Confidence               23457999999999876 46899999999999999999999999764

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=99.86  E-value=3.7e-23  Score=219.11  Aligned_cols=139  Identities=23%  Similarity=0.339  Sum_probs=117.4

Q ss_pred             CeEEEEEEehHhh-HHHHHHHHHHHHHHhhcchhhHHH----------------------------------------HH
Q 045449          641 GMEVAVKVFHQQY-ERALKSFEDECEVRKRIRHRNLVK----------------------------------------II  679 (823)
Q Consensus       641 ~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~----------------------------------------~~  679 (823)
                      +..||||++.... ....+.+.+|++++++++||||++                                        ++
T Consensus        37 ~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~  116 (287)
T 1u59_A           37 QIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQAEALMLVMEMAGGGPLHKFLVGKREEIPVSNVAELL  116 (287)
T ss_dssp             CEEEEEEEECSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEESSSEEEEEECCTTEEHHHHHTTCTTTSCHHHHHHHH
T ss_pred             cceEEEEecCCccchhHHHHHHHHHHHHHhCCCCCEeEEEEEecCCCcEEEEEeCCCCCHHHHHHhCCccCCHHHHHHHH
Confidence            4569999997542 455678999999999999999998                                        36


Q ss_pred             HHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCcc-ccccccccCCCcCcccccCCCccccccce
Q 045449          680 SSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQL-SKQTQTLATIGYMAPEYGTKGRVSTRGDV  758 (823)
Q Consensus       680 ~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv  758 (823)
                      .|++.+|+|+|+.+|+||||||+||+++.++.+||+|||+++........ .......||+.|+|||++.+..++.++||
T Consensus       117 ~qi~~~l~~lH~~~i~H~dlkp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di  196 (287)
T 1u59_A          117 HQVSMGMKYLEEKNFVHRDLAARNVLLVNRHYAKISDFGLSKALGADDSYYTARSAGKWPLKWYAPECINFRKFSSRSDV  196 (287)
T ss_dssp             HHHHHHHHHHHHTTEECCCCSGGGEEEEETTEEEECCCTTCEECTTCSCEECCCCSSCCCGGGCCHHHHHHCEECHHHHH
T ss_pred             HHHHHHHHHHHHCCEeeCCCchheEEEcCCCCEEECcccceeeeccCcceeeccccccccccccCHHHhccCCCCchhhH
Confidence            78899999999999999999999999999999999999999876543321 12233457899999999988889999999


Q ss_pred             ehhhhhhccccC-CCCCcCCCc
Q 045449          759 CSFGIISGGKET-RSMTVGETC  779 (823)
Q Consensus       759 ~S~Gvv~~~~~~-~~~~~~~~~  779 (823)
                      ||+||+++++++ |..||....
T Consensus       197 ~slG~il~ellt~g~~p~~~~~  218 (287)
T 1u59_A          197 WSYGVTMWEALSYGQKPYKKMK  218 (287)
T ss_dssp             HHHHHHHHHHHTTSCCTTTTCC
T ss_pred             HHHHHHHHHHHcCCCCCcccCC
Confidence            999999999998 999997643

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...

Probab=99.86  E-value=3.1e-23  Score=218.72  Aligned_cols=149  Identities=26%  Similarity=0.411  Sum_probs=125.1

Q ss_pred             ccCCccceeeccC-----------CeEEEEEEehHhhHHHHHHHHHHHHHHhhcchhhHHH-------------------
Q 045449          628 DRFSENNLIGIGN-----------GMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVK-------------------  677 (823)
Q Consensus       628 ~~f~~~~~lg~g~-----------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~-------------------  677 (823)
                      ++|...+.||.|+           +..||||++..... ..+.|.+|++++++++||||++                   
T Consensus        13 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~v~e~~~~   91 (279)
T 1qpc_A           13 ETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGSM-SPDAFLAEANLMKQLQHQRLVRLYAVVTQEPIYIITEYMEN   91 (279)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTSS-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSCEEEEECCTT
T ss_pred             HhhhheeeecCCCCeEEEEEEEcCCcEEEEEEecCCcc-cHHHHHHHHHHHHhCCCcCcceEEEEEcCCCcEEEEecCCC
Confidence            5677778888875           45799999875432 2467999999999999999998                   


Q ss_pred             ----------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCcccccccc
Q 045449          678 ----------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQT  735 (823)
Q Consensus       678 ----------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~  735 (823)
                                            ++.|++++|+|+|+.+|+||||||+||+++.++.+||+|||+++....... ......
T Consensus        92 ~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~-~~~~~~  170 (279)
T 1qpc_A           92 GSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEY-TAREGA  170 (279)
T ss_dssp             CBHHHHTTSHHHHTCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTSCEEECCCTTCEECSSSCE-ECCTTC
T ss_pred             CCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHhhEEEcCCCCEEECCCcccccccCccc-ccccCC
Confidence                                  367889999999999999999999999999999999999999987654322 222344


Q ss_pred             ccCCCcCcccccCCCccccccceehhhhhhccccC-CCCCcCCC
Q 045449          736 LATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKET-RSMTVGET  778 (823)
Q Consensus       736 ~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~-~~~~~~~~  778 (823)
                      .+++.|+|||++.++.++.++||||+||+++++++ |..||.+.
T Consensus       171 ~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~  214 (279)
T 1qpc_A          171 KFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGM  214 (279)
T ss_dssp             CCCTTTSCHHHHHHCEECHHHHHHHHHHHHHHHHTTTCCSSTTC
T ss_pred             CCccCccChhhhccCCCCchhhhHHHHHHHHHHHhCCCCCCccc
Confidence            57889999999988889999999999999999999 88898764

>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*

Probab=99.86  E-value=4.9e-23  Score=230.88  Aligned_cols=146  Identities=27%  Similarity=0.324  Sum_probs=122.6

Q ss_pred             hccCCccceeeccC------------CeEEEEEEehHhhHHHHHHHHHHHHHHhhcc------hhhHHH-----------
Q 045449          627 TDRFSENNLIGIGN------------GMEVAVKVFHQQYERALKSFEDECEVRKRIR------HRNLVK-----------  677 (823)
Q Consensus       627 t~~f~~~~~lg~g~------------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~------h~niv~-----------  677 (823)
                      ..+|...+.||.|+            +..||||++.... ...+.+.+|++++..++      |+||++           
T Consensus        96 ~~ry~~~~~LG~G~fg~V~~a~~~~~~~~vAvK~~~~~~-~~~~~~~~E~~~l~~l~~~~~~~~~~iv~~~~~~~~~~~~  174 (429)
T 3kvw_A           96 AYRYEVLKVIGKGSFGQVVKAYDHKVHQHVALKMVRNEK-RFHRQAAEEIRILEHLRKQDKDNTMNVIHMLENFTFRNHI  174 (429)
T ss_dssp             TTTEEEEEEEEESSSEEEEEEEETTTTEEEEEEEECSCH-HHHHHHHHHHHHHHHHHTTCTTSCSCBCCEEEEEEETTEE
T ss_pred             cCcEEEEEEcccCccEEEEEEEECCCCcEEEEEEECCcc-chHHHHHHHHHHHHHHhhccccCCcCEEEEEeecccCCeE
Confidence            35688889999986            5779999997543 34467888998888874      457765           


Q ss_pred             ------------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCc--EEEeecccccccCC
Q 045449          678 ------------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMV--AHISDFGIAKLLSG  725 (823)
Q Consensus       678 ------------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~--~kl~DfGla~~~~~  725 (823)
                                                    ++.|++.+|+|+|+.+|+||||||+|||++.++.  +||+|||+|+....
T Consensus       175 ~lv~e~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlKp~NILl~~~~~~~vkL~DFG~a~~~~~  254 (429)
T 3kvw_A          175 CMTFELLSMNLYELIKKNKFQGFSLPLVRKFAHSILQCLDALHKNRIIHCDLKPENILLKQQGRSGIKVIDFGSSCYEHQ  254 (429)
T ss_dssp             EEEECCCCCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHHTEECSCCSGGGEEESSTTSCCEEECCCTTCEETTC
T ss_pred             EEEEeccCCCHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeEEccCCCcceEEeecccceecCC
Confidence                                          4678899999999999999999999999998877  99999999976432


Q ss_pred             CCccccccccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCC
Q 045449          726 EDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       726 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      .     ....+||+.|+|||++.+..|+.++|||||||++|++++|..||.+.
T Consensus       255 ~-----~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltG~~pf~~~  302 (429)
T 3kvw_A          255 R-----VYTYIQSRFYRAPEVILGARYGMPIDMWSLGCILAELLTGYPLLPGE  302 (429)
T ss_dssp             C-----CCSSCSCGGGCCHHHHHTBCCCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             c-----ccccCCCCCccChHHHhCCCCCchHHHHhHHHHHHHHHhCCCCCCCC
Confidence            2     23467999999999999999999999999999999999999998664

>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}

Probab=99.86  E-value=7.8e-23  Score=223.51  Aligned_cols=147  Identities=28%  Similarity=0.345  Sum_probs=122.5

Q ss_pred             hccCCccceeeccC------------CeEEEEEEehHh--hHHHHHHHHHHHHHHhhcchhhHHH---------------
Q 045449          627 TDRFSENNLIGIGN------------GMEVAVKVFHQQ--YERALKSFEDECEVRKRIRHRNLVK---------------  677 (823)
Q Consensus       627 t~~f~~~~~lg~g~------------~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~---------------  677 (823)
                      .++|...+.||.|+            |..||||++...  .....+.+.+|+.++++++||||++               
T Consensus        23 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~  102 (353)
T 3coi_A           23 PKTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNFY  102 (353)
T ss_dssp             ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEESSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGCC
T ss_pred             CceEEEeeeEecCCCeEEEEEEECCCCCEEEEEEecccccchHHHHHHHHHHHHHHhcCCCCcccHhheEecccccccce
Confidence            35677788888886            677999998643  2445578999999999999999997               


Q ss_pred             ----------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCcc
Q 045449          678 ----------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQL  729 (823)
Q Consensus       678 ----------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~  729 (823)
                                                  ++.|++.+|+|+|+.+|+||||||+||+++.++.+||+|||+++.....   
T Consensus       103 ~~~lv~e~~~~~l~~~~~~~~~~~~~~~i~~qi~~al~~LH~~~ivH~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~---  179 (353)
T 3coi_A          103 DFYLVMPFMQTDLQKIMGLKFSEEKIQYLVYQMLKGLKYIHSAGVVHRDLKPGNLAVNEDCELKILDFGLARHADAE---  179 (353)
T ss_dssp             CCEEEEECCSEEGGGTTTSCCCHHHHHHHHHHHHHHHHHHHHTTCCCSSCCGGGEEECTTCCEEECSTTCTTC-------
T ss_pred             eEEEEeccccCCHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEeECCCCcEEEeecccccCCCCC---
Confidence                                        3678999999999999999999999999999999999999999865322   


Q ss_pred             ccccccccCCCcCcccccCC-CccccccceehhhhhhccccCCCCCcCCC
Q 045449          730 SKQTQTLATIGYMAPEYGTK-GRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       730 ~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                        .....||+.|+|||++.+ ..++.++||||+||+++++++|..||.+.
T Consensus       180 --~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~  227 (353)
T 3coi_A          180 --MTGYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKTLFKGK  227 (353)
T ss_dssp             ------CCSBCCSCHHHHSCCSCCCTTHHHHHHHHHHHHHHHSSCSSBSS
T ss_pred             --ccccccCcCcCCHHHHhCcCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Confidence              234578999999998876 67899999999999999999999998764

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A

Probab=99.86  E-value=1.1e-22  Score=223.31  Aligned_cols=155  Identities=28%  Similarity=0.394  Sum_probs=129.2

Q ss_pred             HHHHHHhccCCccceeeccC------------CeEEEEEEehHhh--------HHHHHHHHHHHHHHhhc-chhhHHH--
Q 045449          621 HELLRATDRFSENNLIGIGN------------GMEVAVKVFHQQY--------ERALKSFEDECEVRKRI-RHRNLVK--  677 (823)
Q Consensus       621 ~~l~~at~~f~~~~~lg~g~------------~~~vavK~~~~~~--------~~~~~~~~~E~~~l~~l-~h~niv~--  677 (823)
                      .......++|...+.||.|+            |..||||++....        ....+.+.+|++++.++ +||||++  
T Consensus        87 ~~~~~~~~~y~~~~~lg~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~  166 (365)
T 2y7j_A           87 AAAKEFYQKYDPKDVIGRGVSSVVRRCVHRATGHEFAVKIMEVTAERLSPEQLEEVREATRRETHILRQVAGHPHIITLI  166 (365)
T ss_dssp             HHHHHHHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEETTSSCCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEE
T ss_pred             hhhhhhhhhcccceEEecCCCEEEEEEEECCCCcEEEEEEEEccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeEEE
Confidence            33445567888889999885            6789999985432        33456789999999999 7999998  


Q ss_pred             --------------------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeeccc
Q 045449          678 --------------------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGI  719 (823)
Q Consensus       678 --------------------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGl  719 (823)
                                                            ++.|++.+|+|+|+.||+||||||+||+++.++.+||+|||+
T Consensus       167 ~~~~~~~~~~lv~e~~~g~~L~~~l~~~~~l~~~~~~~i~~qi~~~L~~LH~~gi~H~Dlkp~NIl~~~~~~ikl~DfG~  246 (365)
T 2y7j_A          167 DSYESSSFMFLVFDLMRKGELFDYLTEKVALSEKETRSIMRSLLEAVSFLHANNIVHRDLKPENILLDDNMQIRLSDFGF  246 (365)
T ss_dssp             EEEEBSSEEEEEECCCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCCTT
T ss_pred             EEEeeCCEEEEEEEeCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEECCCCCEEEEecCc
Confidence                                                  467889999999999999999999999999999999999999


Q ss_pred             ccccCCCCccccccccccCCCcCcccccCC------CccccccceehhhhhhccccCCCCCcCCC
Q 045449          720 AKLLSGEDQLSKQTQTLATIGYMAPEYGTK------GRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       720 a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~------~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      ++.......   .....||+.|+|||++.+      ..++.++|||||||++|++++|..||...
T Consensus       247 ~~~~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~  308 (365)
T 2y7j_A          247 SCHLEPGEK---LRELCGTPGYLAPEILKCSMDETHPGYGKEVDLWACGVILFTLLAGSPPFWHR  308 (365)
T ss_dssp             CEECCTTCC---BCCCCSCGGGCCHHHHHHTTCTTSCCBCTTHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             ccccCCCcc---cccCCCCCCccChhhccccccccCcCCCchhhHHhHHHHHHHHHHCCCCCCCC
Confidence            987654332   234679999999998753      35889999999999999999999999764

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A

Probab=99.86  E-value=8.4e-24  Score=229.70  Aligned_cols=146  Identities=27%  Similarity=0.413  Sum_probs=121.8

Q ss_pred             HhccCCccceeeccC------------CeEEEEEEehHhhHHHHHHHHHHHHHHhhc-chhhHHH---------------
Q 045449          626 ATDRFSENNLIGIGN------------GMEVAVKVFHQQYERALKSFEDECEVRKRI-RHRNLVK---------------  677 (823)
Q Consensus       626 at~~f~~~~~lg~g~------------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~---------------  677 (823)
                      ..++|...+.||.|+            +..||||++....    ..+.+|++++.++ +||||++               
T Consensus        20 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~----~~~~~E~~~l~~~~~hp~iv~~~~~~~~~~~~~lv~   95 (342)
T 2qr7_A           20 FTDGYEVKEDIGVGSYSVCKRCIHKATNMEFAVKIIDKSK----RDPTEEIEILLRYGQHPNIITLKDVYDDGKYVYVVT   95 (342)
T ss_dssp             HHHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTT----CCCHHHHHHHHHHTTSTTBCCEEEEEECSSEEEEEE
T ss_pred             ccccEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEccc----CChHHHHHHHHHhcCCCCcCeEEEEEEcCCEEEEEE
Confidence            356788889999886            6679999997543    2356788888888 7999998               


Q ss_pred             -------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCC----CcEEEeecccccccCCCCc
Q 045449          678 -------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDED----MVAHISDFGIAKLLSGEDQ  728 (823)
Q Consensus       678 -------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~----~~~kl~DfGla~~~~~~~~  728 (823)
                                               ++.|++++|+|+|+.||+||||||+||++..+    +.+||+|||+++.......
T Consensus        96 E~~~gg~L~~~i~~~~~~~~~~~~~~~~qi~~al~~lH~~givHrDlkp~NIl~~~~~~~~~~~kl~Dfg~a~~~~~~~~  175 (342)
T 2qr7_A           96 ELMKGGELLDKILRQKFFSEREASAVLFTITKTVEYLHAQGVVHRDLKPSNILYVDESGNPESIRICDFGFAKQLRAENG  175 (342)
T ss_dssp             CCCCSCBHHHHHHTCTTCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEESSSSCSGGGEEECCCTTCEECBCTTC
T ss_pred             eCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCcEeccCCHHHEEEecCCCCcCeEEEEECCCcccCcCCCC
Confidence                                     46789999999999999999999999998532    3599999999987654322


Q ss_pred             cccccccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCC
Q 045449          729 LSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGE  777 (823)
Q Consensus       729 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~  777 (823)
                        .....+||+.|+|||++.+..|+.++||||+||++|++++|..||..
T Consensus       176 --~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~  222 (342)
T 2qr7_A          176 --LLMTPCYTANFVAPEVLERQGYDAACDIWSLGVLLYTMLTGYTPFAN  222 (342)
T ss_dssp             --CBCCSSCCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSSCS
T ss_pred             --ceeccCCCccccCHHHhcCCCCCCccCeeeHhHHHHHHhcCCCCCCC
Confidence              23456799999999999888899999999999999999999999975

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A*

Probab=99.86  E-value=3e-23  Score=217.49  Aligned_cols=145  Identities=22%  Similarity=0.313  Sum_probs=122.0

Q ss_pred             ccCCccceeeccC----------CeEEEEEEehHhh--HHHHHHHHHHHHHHhhcchhhHHH------------------
Q 045449          628 DRFSENNLIGIGN----------GMEVAVKVFHQQY--ERALKSFEDECEVRKRIRHRNLVK------------------  677 (823)
Q Consensus       628 ~~f~~~~~lg~g~----------~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~------------------  677 (823)
                      ++|...+.||.|+          +..||||++....  ....+.|.+|++++++++||||++                  
T Consensus        10 ~~y~~~~~lg~G~~g~V~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~e   89 (271)
T 3kmu_A           10 KQLNFLTKLNENHSGELWKGRWQGNDIVVKVLKVRDWSTRKSRDFNEECPRLRIFSHPNVLPVLGACQSPPAPHPTLITH   89 (271)
T ss_dssp             GGCEEEEEEEEETTEEEEEEEETTEEEEEEEECCTTCCHHHHHHHHHHGGGGCCCSCTTEECEEEEECTTTSSSCEEEEE
T ss_pred             HHhHHHHHhcCCCcceEEEEEECCeeEEEEEecccccCHHHHHHHHHHHHHHHhcCCCchhheEEEEccCCCCCeEeeec
Confidence            5677778888886          6679999997542  445578999999999999999998                  


Q ss_pred             --------------------------HHHHHHHHhhhcCCCC--EEeccCCCCCEEeCCCCcEEEeecccccccCCCCcc
Q 045449          678 --------------------------IISSSLEYLHFGHSIP--IIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQL  729 (823)
Q Consensus       678 --------------------------~~~~~l~~L~~~h~~~--ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~  729 (823)
                                                ++.|++.+|+|+|+.+  |+||||||+||+++.++.++++|||++.....    
T Consensus        90 ~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~~~i~H~dikp~Nil~~~~~~~~l~~~~~~~~~~~----  165 (271)
T 3kmu_A           90 WMPYGSLYNVLHEGTNFVVDQSQAVKFALDMARGMAFLHTLEPLIPRHALNSRSVMIDEDMTARISMADVKFSFQS----  165 (271)
T ss_dssp             CCTTCBHHHHHHSCSSCCCCHHHHHHHHHHHHHHHHHHTTSSSCCTTCCCSGGGEEECTTSCEEEEGGGSCCTTSC----
T ss_pred             ccCCCcHHHHHhhcccCCCCHHHHHHHHHHHHHHHHHHhcCCCceecCCCccceEEEcCCcceeEEeccceeeecc----
Confidence                                      3678899999999999  99999999999999999999999998765322    


Q ss_pred             ccccccccCCCcCcccccCCCcccc---ccceehhhhhhccccCCCCCcCCCc
Q 045449          730 SKQTQTLATIGYMAPEYGTKGRVST---RGDVCSFGIISGGKETRSMTVGETC  779 (823)
Q Consensus       730 ~~~~~~~gt~~y~aPE~~~~~~~~~---~~Dv~S~Gvv~~~~~~~~~~~~~~~  779 (823)
                         ....||+.|+|||++.+..++.   ++||||+||++|++++|..||.+..
T Consensus       166 ---~~~~~t~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~  215 (271)
T 3kmu_A          166 ---PGRMYAPAWVAPEALQKKPEDTNRRSADMWSFAVLLWELVTREVPFADLS  215 (271)
T ss_dssp             ---TTCBSCGGGSCHHHHHSCGGGSCHHHHHHHHHHHHHHHHHHCSCTTTTSC
T ss_pred             ---cCccCCccccChhhhccCCCCCCCchhhHHHHHHHHHHHHhCCCCccccC
Confidence               2356899999999988765544   7999999999999999999997653

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=99.86  E-value=4.3e-23  Score=223.56  Aligned_cols=150  Identities=23%  Similarity=0.414  Sum_probs=116.0

Q ss_pred             cCCccceeeccC----------------CeEEEEEEehHhh-HHHHHHHHHHHHHHhhcchhhHHH--------------
Q 045449          629 RFSENNLIGIGN----------------GMEVAVKVFHQQY-ERALKSFEDECEVRKRIRHRNLVK--------------  677 (823)
Q Consensus       629 ~f~~~~~lg~g~----------------~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~--------------  677 (823)
                      +|...+.||.|+                +..||||++.... ......|.+|++++++++||||++              
T Consensus        45 ~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv  124 (333)
T 1mqb_A           45 CVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNIIRLEGVISKYKPMMII  124 (333)
T ss_dssp             TEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEE
T ss_pred             HhhcccEEecCCCeEEEEEEEecCCCCccccEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCCcEEE
Confidence            344467889886                1239999997543 444568999999999999999998              


Q ss_pred             ---------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCcc-
Q 045449          678 ---------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQL-  729 (823)
Q Consensus       678 ---------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~-  729 (823)
                                                 ++.|++++|+|+|+.+|+||||||+||+++.++.+||+|||+++........ 
T Consensus       125 ~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~  204 (333)
T 1mqb_A          125 TEYMENGALDKFLREKDGEFSVLQLVGMLRGIAAGMKYLANMNYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEAT  204 (333)
T ss_dssp             EECCTTEEHHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTCCEEECCCCC-----------
T ss_pred             EeCCCCCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCChheEEECCCCcEEECCCCcchhhccccccc
Confidence                                       3578899999999999999999999999999999999999999876533221 


Q ss_pred             ccccccccCCCcCcccccCCCccccccceehhhhhhccccC-CCCCcCCC
Q 045449          730 SKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKET-RSMTVGET  778 (823)
Q Consensus       730 ~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~-~~~~~~~~  778 (823)
                      .......+|+.|+|||++.+..++.++|||||||+++++++ |..||.+.
T Consensus       205 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~pf~~~  254 (333)
T 1mqb_A          205 YTTSGGKIPIRWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGERPYWEL  254 (333)
T ss_dssp             ------CCCGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTC
T ss_pred             cccCCCCccccccCchhcccCCCCchhhhHHHHHHHHHHHcCCCCCcccC
Confidence            11223456889999999988899999999999999999998 99998654

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A

Probab=99.86  E-value=2.6e-23  Score=222.21  Aligned_cols=148  Identities=30%  Similarity=0.385  Sum_probs=123.2

Q ss_pred             hccCCccceeeccC------------CeEEEEEEehHhhHHHHHHHHHHHHHHhhcchhhHHH-----------------
Q 045449          627 TDRFSENNLIGIGN------------GMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVK-----------------  677 (823)
Q Consensus       627 t~~f~~~~~lg~g~------------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~-----------------  677 (823)
                      .++|...+.||.|+            |+.||||++........+.+.+|++++++++||||++                 
T Consensus         8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   87 (304)
T 2jam_A            8 RKTFIFMEVLGSGAFSEVFLVKQRLTGKLFALKCIKKSPAFRDSSLENEIAVLKKIKHENIVTLEDIYESTTHYYLVMQL   87 (304)
T ss_dssp             HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECC------HHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEECC
T ss_pred             hccceeeeeccCCCCceEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHhCCCCCeeehhhhcccCCEEEEEEEc
Confidence            35677788888875            6679999997655444567999999999999999998                 


Q ss_pred             -----------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEe---CCCCcEEEeecccccccCCCCcccc
Q 045449          678 -----------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLL---DEDMVAHISDFGIAKLLSGEDQLSK  731 (823)
Q Consensus       678 -----------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl---~~~~~~kl~DfGla~~~~~~~~~~~  731 (823)
                                             ++.|++.+|+|+|+.+|+||||||+||++   +.++.+||+|||+++.....    .
T Consensus        88 ~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dikp~NIl~~~~~~~~~~kl~Dfg~~~~~~~~----~  163 (304)
T 2jam_A           88 VSGGELFDRILERGVYTEKDASLVIQQVLSAVKYLHENGIVHRDLKPENLLYLTPEENSKIMITDFGLSKMEQNG----I  163 (304)
T ss_dssp             CCSCBHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTTCCCCSCCGGGCEESSSSTTCCEEBCSCSTTCCCCCB----T
T ss_pred             CCCccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCCHHHEEEecCCCCCCEEEccCCcceecCCC----c
Confidence                                   35788999999999999999999999999   77889999999999764322    1


Q ss_pred             ccccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCC
Q 045449          732 QTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       732 ~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      .....||+.|+|||++.+..++.++||||+||+++++++|..||.+.
T Consensus       164 ~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~  210 (304)
T 2jam_A          164 MSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVITYILLCGYPPFYEE  210 (304)
T ss_dssp             THHHHSCCCBCCTTTBSSCSCCHHHHHHHHHHHHHHHHHSSCTTTTS
T ss_pred             cccccCCCCccChHHhccCCCCchhhHHHHHHHHHHHHHCCCCCCCC
Confidence            23456999999999999999999999999999999999999998764

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}

Probab=99.86  E-value=2.3e-23  Score=231.34  Aligned_cols=147  Identities=25%  Similarity=0.393  Sum_probs=124.3

Q ss_pred             ccCCccceeeccC------------CeEEEEEEehHhh-HHHHHHHHHHHHHHhhcchhhHHH-----------------
Q 045449          628 DRFSENNLIGIGN------------GMEVAVKVFHQQY-ERALKSFEDECEVRKRIRHRNLVK-----------------  677 (823)
Q Consensus       628 ~~f~~~~~lg~g~------------~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~-----------------  677 (823)
                      ++|...+.||.|+            +..||||++.... ....+.+.+|++++++++||||++                 
T Consensus         9 ~~y~i~~~LG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~lv~   88 (396)
T 4eut_A            9 HLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKVLIM   88 (396)
T ss_dssp             EEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCEEEEE
T ss_pred             CceEEEEEEEcCCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHHHhcCCCCCCeEEEeeccCCCCeeEEEE
Confidence            5677888899886            6679999997543 233467889999999999999998                 


Q ss_pred             ----------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEe----CCCCcEEEeecccccccCC
Q 045449          678 ----------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLL----DEDMVAHISDFGIAKLLSG  725 (823)
Q Consensus       678 ----------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl----~~~~~~kl~DfGla~~~~~  725 (823)
                                                  ++.|++.+|+|+|+.+|+||||||+||++    +.++.+||+|||+|+....
T Consensus        89 e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~~~~~kL~DFG~a~~~~~  168 (396)
T 4eut_A           89 EFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLRENGIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAARELED  168 (396)
T ss_dssp             CCCTTEEHHHHTTSGGGTTCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEEEECTTSCEEEEECCGGGCEECCC
T ss_pred             ecCCCCCHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHHHCCEEECCcCHHHEEEeecCCCceeEEEecCCCceEccC
Confidence                                        35788999999999999999999999999    7788899999999987654


Q ss_pred             CCccccccccccCCCcCcccccCC--------CccccccceehhhhhhccccCCCCCcCC
Q 045449          726 EDQLSKQTQTLATIGYMAPEYGTK--------GRVSTRGDVCSFGIISGGKETRSMTVGE  777 (823)
Q Consensus       726 ~~~~~~~~~~~gt~~y~aPE~~~~--------~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~  777 (823)
                      ...   .....||+.|+|||++.+        ..++.++|||||||++|++++|..||..
T Consensus       169 ~~~---~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwSlG~il~el~tg~~Pf~~  225 (396)
T 4eut_A          169 DEQ---FVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRP  225 (396)
T ss_dssp             GGG---SSCSSSCCTTCCHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHHHHSSCSEEC
T ss_pred             CCc---cccccCCccccCHHHhhccccccccccCCCcHHHHHHHHHHHHHHHHCCCCCCC
Confidence            322   234679999999998765        5688999999999999999999999964

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*

Probab=99.86  E-value=3.3e-23  Score=218.38  Aligned_cols=146  Identities=30%  Similarity=0.395  Sum_probs=118.0

Q ss_pred             hccCCccceeeccC----------CeEEEEEEehHhhHHHHHHHHHHHHHHhhcchhhHHH-------------------
Q 045449          627 TDRFSENNLIGIGN----------GMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVK-------------------  677 (823)
Q Consensus       627 t~~f~~~~~lg~g~----------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~-------------------  677 (823)
                      .++|...+.||.|+          |..||||++....  ..+.|.+|++++++++||||++                   
T Consensus        20 ~~~y~~~~~lg~G~~g~V~~~~~~~~~vavK~~~~~~--~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~lv~e~~   97 (278)
T 1byg_A           20 MKELKLLQTIGKGEFGDVMLGDYRGNKVAVKCIKNDA--TAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYM   97 (278)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEETTEEEEEEECCCCC----HHHHHTHHHHTTCCCTTBCCEEEEECCC--CCEEEECCC
T ss_pred             hhhceEEeEEecCCCceEEEEEEcCCEEEEEEecchh--HHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCCceEEEEecC
Confidence            35777788888886          6779999997543  3467999999999999999998                   


Q ss_pred             ------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCcccccc
Q 045449          678 ------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQT  733 (823)
Q Consensus       678 ------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~  733 (823)
                                              ++.|++++|+|+|+.+|+||||||+||+++.++.+||+|||+++......     .
T Consensus        98 ~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~~l~Dfg~~~~~~~~~-----~  172 (278)
T 1byg_A           98 AKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGNNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQ-----D  172 (278)
T ss_dssp             TTEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECTTSCEEECCCCC--------------
T ss_pred             CCCCHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHhCCccccCCCcceEEEeCCCcEEEeeccccccccccc-----c
Confidence                                    35688889999999999999999999999999999999999998654321     2


Q ss_pred             ccccCCCcCcccccCCCccccccceehhhhhhccccC-CCCCcCCCc
Q 045449          734 QTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKET-RSMTVGETC  779 (823)
Q Consensus       734 ~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~-~~~~~~~~~  779 (823)
                      ...+++.|+|||++.+..++.++||||+||+++++++ |..||....
T Consensus       173 ~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~~  219 (278)
T 1byg_A          173 TGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIP  219 (278)
T ss_dssp             ---CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSC
T ss_pred             CCCccccccCHHHhCCCCCCchhcHHHHHHHHHHHHhCCCCCCCCCC
Confidence            3457899999999988889999999999999999997 999987653

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*

Probab=99.86  E-value=5.1e-23  Score=235.00  Aligned_cols=148  Identities=28%  Similarity=0.408  Sum_probs=123.6

Q ss_pred             hccCCccceeeccC------------CeEEEEEEehHhhH--HHHHHHHHHHHHHhhcchhhHHH---------------
Q 045449          627 TDRFSENNLIGIGN------------GMEVAVKVFHQQYE--RALKSFEDECEVRKRIRHRNLVK---------------  677 (823)
Q Consensus       627 t~~f~~~~~lg~g~------------~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~niv~---------------  677 (823)
                      .++|...+.||.|+            +..||||++.....  ...+.+.+|++++++++||||++               
T Consensus        21 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~  100 (486)
T 3mwu_A           21 AERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILEDSSSFYIVG  100 (486)
T ss_dssp             HHHEEEEEEEECCSSSEEEEEEETTTCCEEEEEEEEHHHHBCSCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             hcceEEeEEEeecCCEEEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHHHhCCCCCcCeEEEEEEcCCEEEEEE
Confidence            46788889999886            56799999965432  23467899999999999999998               


Q ss_pred             -------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeC---CCCcEEEeecccccccCCCCcc
Q 045449          678 -------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLD---EDMVAHISDFGIAKLLSGEDQL  729 (823)
Q Consensus       678 -------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~---~~~~~kl~DfGla~~~~~~~~~  729 (823)
                                               ++.|++.+|+|+|+.+|+||||||+|||++   .++.+||+|||+|+......  
T Consensus       101 e~~~~~~L~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~~~~--  178 (486)
T 3mwu_A          101 ELYTGGELFDEIIKRKRFSEHDAARIIKQVFSGITYMHKHNIVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQQNT--  178 (486)
T ss_dssp             CCCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEESSSSTTCCEEECSCSCTTTBCCC---
T ss_pred             EcCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeEeccCchHHEEEecCCCCCCEEEEECCcCeECCCCC--
Confidence                                     467899999999999999999999999995   45689999999998764432  


Q ss_pred             ccccccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCC
Q 045449          730 SKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       730 ~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                       .....+||+.|+|||++.+ .|+.++||||+||++|++++|..||.+.
T Consensus       179 -~~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~~ll~g~~pf~~~  225 (486)
T 3mwu_A          179 -KMKDRIGTAYYIAPEVLRG-TYDEKCDVWSAGVILYILLSGTPPFYGK  225 (486)
T ss_dssp             ----CCTTGGGGCCGGGGGS-CCCHHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             -ccCCCcCCCCCCCHHHhCC-CCCchhhHHHHHHHHHHHHhCCCCCCCC
Confidence             2334679999999999865 5999999999999999999999999764

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*

Probab=99.86  E-value=1.2e-23  Score=240.09  Aligned_cols=149  Identities=30%  Similarity=0.437  Sum_probs=125.6

Q ss_pred             hccCCccceeeccC------------CeEEEEEEehHhh---HHHHHHHHHHHHHHhhcchhhHHH--------------
Q 045449          627 TDRFSENNLIGIGN------------GMEVAVKVFHQQY---ERALKSFEDECEVRKRIRHRNLVK--------------  677 (823)
Q Consensus       627 t~~f~~~~~lg~g~------------~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~--------------  677 (823)
                      .++|...+.||.|+            +..||||++....   ....+.+.+|++++++++||||++              
T Consensus        25 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv  104 (484)
T 3nyv_A           25 SDRYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLKQLDHPNIMKLYEFFEDKGYFYLV  104 (484)
T ss_dssp             HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCBSSCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             cCceEEeeEEecCCCEEEEEEEECCCCCEEEEEEEEhhhcccchHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEEE
Confidence            35788888899886            6679999986432   233467999999999999999998              


Q ss_pred             --------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEe---CCCCcEEEeecccccccCCCCc
Q 045449          678 --------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLL---DEDMVAHISDFGIAKLLSGEDQ  728 (823)
Q Consensus       678 --------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl---~~~~~~kl~DfGla~~~~~~~~  728 (823)
                                                ++.|++.+|+|+|+.+|+||||||+|||+   +.++.+||+|||+|+.......
T Consensus       105 ~e~~~~~~L~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~~~~~  184 (484)
T 3nyv_A          105 GEVYTGGELFDEIISRKRFSEVDAARIIRQVLSGITYMHKNKIVHRDLKPENLLLESKSKDANIRIIDFGLSTHFEASKK  184 (484)
T ss_dssp             ECCCCSCBHHHHHHTCSCCBHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEESSSSTTCCEEECCTTHHHHBCCCCS
T ss_pred             EecCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeeeCCCCHHHEEEecCCCCCcEEEEeeeeeEEcccccc
Confidence                                      46789999999999999999999999999   4678999999999987654332


Q ss_pred             cccccccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCCc
Q 045449          729 LSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGETC  779 (823)
Q Consensus       729 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~~  779 (823)
                         ....+||+.|+|||++.+ .|+.++||||+||++|++++|..||.+..
T Consensus       185 ---~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~~ll~g~~pf~~~~  231 (484)
T 3nyv_A          185 ---MKDKIGTAYYIAPEVLHG-TYDEKCDVWSTGVILYILLSGCPPFNGAN  231 (484)
T ss_dssp             ---HHHHTTGGGTCCHHHHHT-CCCTHHHHHHHHHHHHHHHHSSCSSCCSS
T ss_pred             ---cccCCCCccccCceeecC-CCCCcceeHHHHHHHHHHHHCCCCCCCCC
Confidence               234579999999999865 69999999999999999999999997653

>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*

Probab=99.86  E-value=2.2e-23  Score=244.41  Aligned_cols=138  Identities=24%  Similarity=0.318  Sum_probs=112.9

Q ss_pred             eEEEEEEehHhh--HHHHHHHHHHHHHHhhcchhhHHH---------------------------------------HHH
Q 045449          642 MEVAVKVFHQQY--ERALKSFEDECEVRKRIRHRNLVK---------------------------------------IIS  680 (823)
Q Consensus       642 ~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~---------------------------------------~~~  680 (823)
                      ..||||+++...  ....++|.+|++++++++|||||+                                       ++.
T Consensus       397 ~~vAvK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~lv~E~~~~g~L~~~l~~~~~l~~~~~~~i~~  476 (635)
T 4fl3_A          397 KTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICEAESWMLVMEMAELGPLNKYLQQNRHVKDKNIIELVH  476 (635)
T ss_dssp             EEEEEEEECGGGGCGGGHHHHHHHHHHHHHCCCTTBCCEEEEEESSSEEEEEECCTTEEHHHHHHHCTTCCHHHHHHHHH
T ss_pred             eEEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCEEEEEEccCCCCHHHHHhhCCCCCHHHHHHHHH
Confidence            569999997543  234578999999999999999998                                       467


Q ss_pred             HHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCc-cccccccccCCCcCcccccCCCcccccccee
Q 045449          681 SSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQ-LSKQTQTLATIGYMAPEYGTKGRVSTRGDVC  759 (823)
Q Consensus       681 ~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~-~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~  759 (823)
                      |++.+|+|+|+.+|+||||||+|||++.++.+||+|||+|+....... ........+|+.|+|||++.+..++.++|||
T Consensus       477 qi~~~L~yLH~~~iiHrDLkp~NILl~~~~~~kL~DFGla~~~~~~~~~~~~~~~~~~t~~y~APE~~~~~~~~~~sDvw  556 (635)
T 4fl3_A          477 QVSMGMKYLEESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQTHGKWPVKWYAPECINYYKFSSKSDVW  556 (635)
T ss_dssp             HHHHHHHHHHHTTCCCSCCSGGGEEEEETTEEEECCTTHHHHTTC-------------CGGGSCHHHHHHCCCCHHHHHH
T ss_pred             HHHHHHHHHHHCCEeCCCCChHhEEEeCCCCEEEEEcCCccccccCccccccccCCCCceeeeChhhhcCCCCCcHHHHH
Confidence            899999999999999999999999999999999999999987654332 1222334578899999999988999999999


Q ss_pred             hhhhhhccccC-CCCCcCCCc
Q 045449          760 SFGIISGGKET-RSMTVGETC  779 (823)
Q Consensus       760 S~Gvv~~~~~~-~~~~~~~~~  779 (823)
                      ||||++|++++ |..||.+..
T Consensus       557 SlGv~l~ellt~G~~Pf~~~~  577 (635)
T 4fl3_A          557 SFGVLMWEAFSYGQKPYRGMK  577 (635)
T ss_dssp             HHHHHHHHHHTTTCCSSTTCC
T ss_pred             HHHHHHHHHHhCCCCCCCCCC
Confidence            99999999998 999997753

>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...

Probab=99.86  E-value=7e-23  Score=221.57  Aligned_cols=144  Identities=22%  Similarity=0.339  Sum_probs=122.7

Q ss_pred             ccCCccceeeccC------------CeEEEEEEehHhhHHHHHHHHHHHHHHhhcc-hhhHHH-----------------
Q 045449          628 DRFSENNLIGIGN------------GMEVAVKVFHQQYERALKSFEDECEVRKRIR-HRNLVK-----------------  677 (823)
Q Consensus       628 ~~f~~~~~lg~g~------------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~-----------------  677 (823)
                      ++|...+.||.|+            +..||||++....   .+.+.+|++++++++ ||||++                 
T Consensus        36 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~---~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~~~~~~lv~  112 (330)
T 3nsz_A           36 DDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPVK---KKKIKREIKILENLRGGPNIITLADIVKDPVSRTPALVF  112 (330)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECSCC---HHHHHHHHHHHHHHTTSTTBCCEEEEEECTTTCCEEEEE
T ss_pred             CceEEEEEecccCCeEEEEEEECCCCcEEEEEEecccc---hHHHHHHHHHHHHcCCCCCEEEeeeeeccCCCCceEEEE
Confidence            5677888899886            5679999997543   257899999999997 999997                 


Q ss_pred             ----------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCC-cEEEeecccccccCCCCccccccc
Q 045449          678 ----------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDM-VAHISDFGIAKLLSGEDQLSKQTQ  734 (823)
Q Consensus       678 ----------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~-~~kl~DfGla~~~~~~~~~~~~~~  734 (823)
                                            ++.|++.+|+|+|+.+|+||||||+||+++.++ .+||+|||+|+.......   ...
T Consensus       113 e~~~~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dikp~Nil~~~~~~~~kl~Dfg~a~~~~~~~~---~~~  189 (330)
T 3nsz_A          113 EHVNNTDFKQLYQTLTDYDIRFYMYEILKALDYCHSMGIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPGQE---YNV  189 (330)
T ss_dssp             ECCCCCCHHHHGGGCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEETTTTEEEECCCTTCEECCTTCC---CCS
T ss_pred             eccCchhHHHHHHhCCHHHHHHHHHHHHHHHHHHHhCCeeeCCCCHHHEEEcCCCCEEEEEeCCCceEcCCCCc---ccc
Confidence                                  467899999999999999999999999999776 899999999987654332   234


Q ss_pred             cccCCCcCcccccCC-CccccccceehhhhhhccccCCCCCcCC
Q 045449          735 TLATIGYMAPEYGTK-GRVSTRGDVCSFGIISGGKETRSMTVGE  777 (823)
Q Consensus       735 ~~gt~~y~aPE~~~~-~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~  777 (823)
                      ..||+.|+|||++.+ ..++.++||||+||+++++++|..||..
T Consensus       190 ~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~p~~~  233 (330)
T 3nsz_A          190 RVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFH  233 (330)
T ss_dssp             CCSCGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHTCSSSSC
T ss_pred             ccccccccChhhhcCCCcCCchhhHHHHHHHHHHHHhCCCCccc
Confidence            578999999999877 6689999999999999999999999844

>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group}

Probab=99.86  E-value=2.7e-23  Score=235.29  Aligned_cols=151  Identities=21%  Similarity=0.241  Sum_probs=123.7

Q ss_pred             hccCCccceeeccC------------CeEEEEEEehHhhHHHHHHHHHHHHHHhhcchhhHHH-----------------
Q 045449          627 TDRFSENNLIGIGN------------GMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVK-----------------  677 (823)
Q Consensus       627 t~~f~~~~~lg~g~------------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~-----------------  677 (823)
                      .++|...+.||.|+            +..||||++.....  .+++.+|++++..++|++.+.                 
T Consensus         6 ~~~y~i~~~LG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~--~~~~~~E~~il~~L~~~~~i~~i~~~~~~~~~~~lvme   83 (483)
T 3sv0_A            6 GNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTK--HPQLLYESKIYRILQGGTGIPNVRWFGVEGDYNVLVMD   83 (483)
T ss_dssp             TTTEECCCCCEECSSCEEEEEEETTTCCEEEEEEEETTCS--SCCHHHHHHHHHHTTTSTTCCCEEEEEEETTEEEEEEE
T ss_pred             CCcEEEEEEEeeCCCEEEEEEEECCCCcEEEEEEeccccc--cHHHHHHHHHHHHhcCCCCCCeEEEEEeeCCEEEEEEE
Confidence            35788888888875            56799998764432  245888999999998754443                 


Q ss_pred             ------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEe---CCCCcEEEeecccccccCCCCcc-
Q 045449          678 ------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLL---DEDMVAHISDFGIAKLLSGEDQL-  729 (823)
Q Consensus       678 ------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl---~~~~~~kl~DfGla~~~~~~~~~-  729 (823)
                                              ++.|++.+|+|+|+.+|+||||||+|||+   +.++.+||+|||+++........ 
T Consensus        84 ~~g~sL~~ll~~~~~~l~~~~~~~i~~qi~~aL~yLH~~gIvHrDIKP~NILl~~~~~~~~vkL~DFGla~~~~~~~~~~  163 (483)
T 3sv0_A           84 LLGPSLEDLFNFCSRKLSLKTVLMLADQMINRVEFVHSKSFLHRDIKPDNFLMGLGRRANQVYIIDFGLAKKYRDTSTHQ  163 (483)
T ss_dssp             CCCCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECCGGGTTCEEECCCTTCEECBCTTTCC
T ss_pred             CCCCCHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHCCEeecccCcceEEEecCCCCCeEEEEeCCcceeccCCcccc
Confidence                                    46789999999999999999999999999   57889999999999876543321 


Q ss_pred             ----ccccccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCCc
Q 045449          730 ----SKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGETC  779 (823)
Q Consensus       730 ----~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~~  779 (823)
                          .......||+.|+|||++.+..++.++|||||||++|++++|..||.+..
T Consensus       164 ~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDvwSlGvil~elltG~~Pf~~~~  217 (483)
T 3sv0_A          164 HIPYRENKNLTGTARYASVNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLK  217 (483)
T ss_dssp             BCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCC
T ss_pred             ccccccccccCCCccccCHHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCcccc
Confidence                12235679999999999999999999999999999999999999998753

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}

Probab=99.86  E-value=2.6e-23  Score=220.04  Aligned_cols=148  Identities=30%  Similarity=0.453  Sum_probs=119.5

Q ss_pred             ccCCccceeeccC------------CeEEEEEEehHhh-HHHHHHHHHHHHHHhhcchhhHHH-----------------
Q 045449          628 DRFSENNLIGIGN------------GMEVAVKVFHQQY-ERALKSFEDECEVRKRIRHRNLVK-----------------  677 (823)
Q Consensus       628 ~~f~~~~~lg~g~------------~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~-----------------  677 (823)
                      ++|...+.||.|+            +..||||++.... ....+.+.+|++++++++||||++                 
T Consensus        22 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~  101 (285)
T 3is5_A           22 DLFIFKRKLGSGAFGDVHLVEERSSGLERVIKTINKDRSQVPMEQIEAEIEVLKSLDHPNIIKIFEVFEDYHNMYIVMET  101 (285)
T ss_dssp             HHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCCSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEECC
T ss_pred             hheeecceeccCCCeEEEEEEEccCCceEEEEEeeccccchhHHHHHHHHHHHHhCCCchHHhHHHheecCCeEEEEEEe
Confidence            5677788899886            5678999987554 223478999999999999999998                 


Q ss_pred             ---------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEe---CCCCcEEEeecccccccCCCC
Q 045449          678 ---------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLL---DEDMVAHISDFGIAKLLSGED  727 (823)
Q Consensus       678 ---------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl---~~~~~~kl~DfGla~~~~~~~  727 (823)
                                                 ++.|++.+|+|+|+.+|+||||||+||++   +.++.+||+|||+++......
T Consensus       102 ~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~ivH~dikp~NIl~~~~~~~~~~kl~Dfg~a~~~~~~~  181 (285)
T 3is5_A          102 CEGGELLERIVSAQARGKALSEGYVAELMKQMMNALAYFHSQHVVHKDLKPENILFQDTSPHSPIKIIDFGLAELFKSDE  181 (285)
T ss_dssp             CSCCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCSGGGEEESSSSTTCCEEECCCCCCCC-----
T ss_pred             CCCCcHHHHHHhhhhcccCCCHHHHHHHHHHHHHHHHHHHhCCEEECCCCHHHEEEecCCCCCCEEEEeeecceecCCcc
Confidence                                       35688899999999999999999999999   456789999999998764332


Q ss_pred             ccccccccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCCc
Q 045449          728 QLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGETC  779 (823)
Q Consensus       728 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~~  779 (823)
                      .   .....||+.|+|||++. +.++.++||||+||+++++++|..||.+..
T Consensus       182 ~---~~~~~~t~~y~aPE~~~-~~~~~~~Di~slG~il~~ll~g~~pf~~~~  229 (285)
T 3is5_A          182 H---STNAAGTALYMAPEVFK-RDVTFKCDIWSAGVVMYFLLTGCLPFTGTS  229 (285)
T ss_dssp             --------CTTGGGCCHHHHT-TCCCHHHHHHHHHHHHHHHHHSSCSSCCSS
T ss_pred             c---CcCcccccCcCChHHhc-cCCCcccCeehHHHHHHHHHhCCCCCCCCC
Confidence            2   23457999999999875 568999999999999999999999997653

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*

Probab=99.86  E-value=6.2e-23  Score=219.21  Aligned_cols=150  Identities=27%  Similarity=0.361  Sum_probs=127.4

Q ss_pred             hccCCccceeeccC------------CeEEEEEEehHhh-HHHHHHHHHHHHHHhhcchhhHHH----------------
Q 045449          627 TDRFSENNLIGIGN------------GMEVAVKVFHQQY-ERALKSFEDECEVRKRIRHRNLVK----------------  677 (823)
Q Consensus       627 t~~f~~~~~lg~g~------------~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~----------------  677 (823)
                      .+.|...+.||.|+            +..||||++.... ....+.+.+|+.++++++||||++                
T Consensus        21 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e  100 (303)
T 3a7i_A           21 EELFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKDTKLWIIME  100 (303)
T ss_dssp             GGTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEETTTCSTTHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             HHHHHHhhhhcccCCeEEEEEEECCCCcEEEEEEecccccHHHHHHHHHHHHHHHhCCCCCEeEEEEEEecCCeEEEEEE
Confidence            35677778888875            5679999986443 334578999999999999999998                


Q ss_pred             -----------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccc
Q 045449          678 -----------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQ  734 (823)
Q Consensus       678 -----------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~  734 (823)
                                             ++.|++.+|+|+|+.+|+||||||+||+++.++.+||+|||+++.......  ....
T Consensus       101 ~~~~~~L~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~kl~Dfg~~~~~~~~~~--~~~~  178 (303)
T 3a7i_A          101 YLGGGSALDLLEPGPLDETQIATILREILKGLDYLHSEKKIHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQI--KRNT  178 (303)
T ss_dssp             CCTTEEHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEECBTTBC--CBCC
T ss_pred             eCCCCcHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCCccCCCChheEEECCCCCEEEeecccceecCcccc--ccCc
Confidence                                   467889999999999999999999999999999999999999987653321  2234


Q ss_pred             cccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCC
Q 045449          735 TLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       735 ~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      ..||+.|+|||++.+..++.++|||||||+++++++|..||...
T Consensus       179 ~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~  222 (303)
T 3a7i_A          179 FVGTPFWMAPEVIKQSAYDSKADIWSLGITAIELARGEPPHSEL  222 (303)
T ss_dssp             CCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTS
T ss_pred             cCCCcCccCHHHHhcCCCCchhhhHHHHHHHHHHccCCCCCCCc
Confidence            57999999999999999999999999999999999999998764

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*

Probab=99.86  E-value=2.1e-23  Score=221.56  Aligned_cols=153  Identities=24%  Similarity=0.317  Sum_probs=122.7

Q ss_pred             hccCCccc-eeeccC--------------CeEEEEEEehHhh--HHHHHHHHHHHHHHhhcchhhHHH------------
Q 045449          627 TDRFSENN-LIGIGN--------------GMEVAVKVFHQQY--ERALKSFEDECEVRKRIRHRNLVK------------  677 (823)
Q Consensus       627 t~~f~~~~-~lg~g~--------------~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~------------  677 (823)
                      .++|...+ .||.|+              +..||||++....  ....++|.+|++++++++||||++            
T Consensus        15 ~~~y~~~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~l   94 (291)
T 1xbb_A           15 RKLLTLEDKELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICEAESWML   94 (291)
T ss_dssp             GGGEEEEEEEEEECSSEEEEEEEEECSSSEEEEEEEEEC-----CHHHHHHHHHHHHHHTCCCTTBCCEEEEEESSSEEE
T ss_pred             chhhhhccCccccccCeeeEeeeecCCCceeeEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEEECCCCcEE
Confidence            34566555 788775              3569999987543  234578999999999999999998            


Q ss_pred             ---------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCcc-
Q 045449          678 ---------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQL-  729 (823)
Q Consensus       678 ---------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~-  729 (823)
                                                 ++.|++.+|+|+|+.+|+||||||+||+++.++.+||+|||+++........ 
T Consensus        95 v~e~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~~l~~LH~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~  174 (291)
T 1xbb_A           95 VMEMAELGPLNKYLQQNRHVKDKNIIELVHQVSMGMKYLEESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYY  174 (291)
T ss_dssp             EEECCTTEEHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEEETTEEEECCCTTCEECCTTCSEE
T ss_pred             EEEeCCCCCHHHHHHhCcCCCHHHHHHHHHHHHHHHHHHHhCCeEcCCCCcceEEEeCCCcEEEccCCcceeeccCCCcc
Confidence                                       3678899999999999999999999999999999999999999876543321 


Q ss_pred             ccccccccCCCcCcccccCCCccccccceehhhhhhccccC-CCCCcCCCc
Q 045449          730 SKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKET-RSMTVGETC  779 (823)
Q Consensus       730 ~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~-~~~~~~~~~  779 (823)
                      .......+|+.|+|||++.+..++.++||||+||+++++++ |..||.+..
T Consensus       175 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~  225 (291)
T 1xbb_A          175 KAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMK  225 (291)
T ss_dssp             EC----CCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCCSSTTCC
T ss_pred             cccccCCCCceeeChHHhccCCCChhhhHHHHHHHHHHHHhcCCCCCCCCC
Confidence            11223456789999999988889999999999999999998 999997653

>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}

Probab=99.86  E-value=2.9e-23  Score=226.77  Aligned_cols=146  Identities=13%  Similarity=0.154  Sum_probs=121.4

Q ss_pred             ccCCccceeeccC--------------------CeEEEEEEehHhhHHHHHHHHHHHHHHhhcchhhHHH----------
Q 045449          628 DRFSENNLIGIGN--------------------GMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVK----------  677 (823)
Q Consensus       628 ~~f~~~~~lg~g~--------------------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~----------  677 (823)
                      ++|...+.||.|+                    +..||||++...     +.+.+|++++++++||||++          
T Consensus        42 ~~y~~~~~lg~G~~g~Vy~~~~~~t~~~~~~~~~~~vavK~~~~~-----~~~~~E~~~l~~l~h~niv~~~~~~~~~~~  116 (352)
T 2jii_A           42 RQWKLKSFQTRDNQGILYEAAPTSTLTCDSGPQKQKFSLKLDAKD-----GRLFNEQNFFQRAAKPLQVNKWKKLYSTPL  116 (352)
T ss_dssp             CEEEEEEEEEEETTEEEEEEEECC-----------CEEEEEEETT-----STHHHHHHHHHHHCCHHHHHHHHHHTTCTT
T ss_pred             CeEEEEEEecCCCCeEEEEEeecCCccccccccCceEEEEEeccc-----chHHHHHHHHHHhcccchhhhhhhhccCCc
Confidence            5677777777764                    356999998754     46889999999999999996          


Q ss_pred             -----------------------------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCC
Q 045449          678 -----------------------------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDM  710 (823)
Q Consensus       678 -----------------------------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~  710 (823)
                                                                     ++.|++.+|+|+|+.+|+||||||+||+++.++
T Consensus       117 ~~i~~~~~~~~~~~~~~~lv~e~~~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~~L~~LH~~~ivH~Dikp~NIl~~~~~  196 (352)
T 2jii_A          117 LAIPTCMGFGVHQDKYRFLVLPSLGRSLQSALDVSPKHVLSERSVLQVACRLLDALEFLHENEYVHGNVTAENIFVDPED  196 (352)
T ss_dssp             CSCCCCCEEEEETTTEEEEEEECCCEEHHHHHHHSGGGCCCHHHHHHHHHHHHHHHHHHHHTTCBCSCCCGGGEEEETTE
T ss_pred             cCccchhhccccCCcEEEEEecCCCcCHHHHHHhCCcCCCCHHHHHHHHHHHHHHHHHHHhCCccCCCCCHHHEEEcCCC
Confidence                                                           256888999999999999999999999999988


Q ss_pred             --cEEEeecccccccCCCCcc-----ccccccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCC
Q 045449          711 --VAHISDFGIAKLLSGEDQL-----SKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       711 --~~kl~DfGla~~~~~~~~~-----~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                        .+||+|||+++........     .......||+.|+|||++.+..++.++|||||||++|++++|..||...
T Consensus       197 ~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~  271 (352)
T 2jii_A          197 QSQVTLAGYGFAFRYCPSGKHVAYVEGSRSPHEGDLEFISMDLHKGCGPSRRSDLQSLGYCMLKWLYGFLPWTNC  271 (352)
T ss_dssp             EEEEEECCGGGCBCSSGGGCCCCCCTTSSCTTCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSCCTTGGG
T ss_pred             CceEEEecCcceeeccCCCccccccccccccccCCccccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCcccC
Confidence              9999999999876433211     1123457999999999999989999999999999999999999999764

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*

Probab=99.86  E-value=5e-23  Score=235.47  Aligned_cols=149  Identities=28%  Similarity=0.423  Sum_probs=122.6

Q ss_pred             hccCCccceeeccC------------CeEEEEEEehHhh--HHHHHHHHHHHHHHhhcchhhHHH---------------
Q 045449          627 TDRFSENNLIGIGN------------GMEVAVKVFHQQY--ERALKSFEDECEVRKRIRHRNLVK---------------  677 (823)
Q Consensus       627 t~~f~~~~~lg~g~------------~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~---------------  677 (823)
                      .++|...+.||.|+            +..||||++....  ....+.+.+|++++++++|||||+               
T Consensus        36 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~  115 (494)
T 3lij_A           36 SEMYQRVKKLGSGAYGEVLLCRDKVTHVERAIKIIRKTSVSTSSNSKLLEEVAVLKLLDHPNIMKLYDFFEDKRNYYLVM  115 (494)
T ss_dssp             HHHEEEEEEEECC---EEEEEEETTTCCEEEEEEEEC-----CTTHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             hcCeEEeeEEecCCCEEEEEEEECCCCcEEEEEEEeccccCchHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEE
Confidence            45677888899886            5668999987543  223467899999999999999998               


Q ss_pred             -------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCC---CCcEEEeecccccccCCCCcc
Q 045449          678 -------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDE---DMVAHISDFGIAKLLSGEDQL  729 (823)
Q Consensus       678 -------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~---~~~~kl~DfGla~~~~~~~~~  729 (823)
                                               ++.|++.+|+|+|+.+|+||||||+|||++.   ++.+||+|||+|+......  
T Consensus       116 e~~~~g~L~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~Dlkp~Nil~~~~~~~~~~kl~DfG~a~~~~~~~--  193 (494)
T 3lij_A          116 ECYKGGELFDEIIHRMKFNEVDAAVIIKQVLSGVTYLHKHNIVHRDLKPENLLLESKEKDALIKIVDFGLSAVFENQK--  193 (494)
T ss_dssp             ECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEESCSSTTCCEEECCCTTCEECBTTB--
T ss_pred             ecCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCceeccCChhhEEEeCCCCCCcEEEEECCCCeECCCCc--
Confidence                                     3678899999999999999999999999975   4569999999998765432  


Q ss_pred             ccccccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCCc
Q 045449          730 SKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGETC  779 (823)
Q Consensus       730 ~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~~  779 (823)
                       .....+||+.|+|||++. +.|+.++||||+||++|++++|..||.+..
T Consensus       194 -~~~~~~gt~~y~aPE~l~-~~~~~~~DiwslG~il~~ll~g~~pf~~~~  241 (494)
T 3lij_A          194 -KMKERLGTAYYIAPEVLR-KKYDEKCDVWSIGVILFILLAGYPPFGGQT  241 (494)
T ss_dssp             -CBCCCCSCTTTCCHHHHT-TCBCTHHHHHHHHHHHHHHHHSSCSSCCSS
T ss_pred             -cccccCCCcCeeCHHHHc-ccCCCchhHHHHHHHHHHHHhCCCCCCCCC
Confidence             234567999999999876 569999999999999999999999997643

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}

Probab=99.86  E-value=3.8e-23  Score=219.79  Aligned_cols=148  Identities=29%  Similarity=0.414  Sum_probs=119.7

Q ss_pred             cCCccceeeccC------------CeEEEEEEehHhhHHHHHHHHHHHHHHhhcchhhHHH-------------------
Q 045449          629 RFSENNLIGIGN------------GMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVK-------------------  677 (823)
Q Consensus       629 ~f~~~~~lg~g~------------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~-------------------  677 (823)
                      +|....+||.|+            +..||||++........+.+.+|+.++++++||||++                   
T Consensus        23 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~  102 (295)
T 2clq_A           23 ENGDRVVLGKGTYGIVYAGRDLSNQVRIAIKEIPERDSRYSQPLHEEIALHKHLKHKNIVQYLGSFSENGFIKIFMEQVP  102 (295)
T ss_dssp             TTSSBCEEEECSSSEEEEEEETTTCCEEEEEEEECCCC---HHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEECCS
T ss_pred             CCCCcEEEeecCcEEEEEEEECCCCeEEEEEEccCCchHHHHHHHHHHHHHHhCCCCCEeeEeeEEEeCCcEEEEEEeCC
Confidence            344455788775            5679999997665555678999999999999999998                   


Q ss_pred             ------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCC-CCcEEEeecccccccCCCCccccc
Q 045449          678 ------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDE-DMVAHISDFGIAKLLSGEDQLSKQ  732 (823)
Q Consensus       678 ------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~-~~~~kl~DfGla~~~~~~~~~~~~  732 (823)
                                              ++.|++.+|+|+|+.+|+||||||+||+++. ++.+||+|||+++.......  ..
T Consensus       103 ~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~~kl~Dfg~~~~~~~~~~--~~  180 (295)
T 2clq_A          103 GGSLSALLRSKWGPLKDNEQTIGFYTKQILEGLKYLHDNQIVHRDIKGDNVLINTYSGVLKISDFGTSKRLAGINP--CT  180 (295)
T ss_dssp             EEEHHHHHHHTTCCCTTCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEETTTCCEEECCTTTCEESCC-------
T ss_pred             CCCHHHHHHhhccCCCccHHHHHHHHHHHHHHHHHHHhCCEEccCCChhhEEEECCCCCEEEeecccccccCCCCC--cc
Confidence                                    2468899999999999999999999999987 89999999999987643221  12


Q ss_pred             cccccCCCcCcccccCCCc--cccccceehhhhhhccccCCCCCcCCC
Q 045449          733 TQTLATIGYMAPEYGTKGR--VSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       733 ~~~~gt~~y~aPE~~~~~~--~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      ....||+.|+|||++.+..  ++.++|||||||+++++++|..||.+.
T Consensus       181 ~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~  228 (295)
T 2clq_A          181 ETFTGTLQYMAPEIIDKGPRGYGKAADIWSLGCTIIEMATGKPPFYEL  228 (295)
T ss_dssp             CCCCCCGGGCCHHHHHHGGGGCSHHHHHHHHHHHHHHHHHTSCTTGGG
T ss_pred             cccCCCccccChhhhcCCCCCCCcHHHHHHHHHHHHHHHHCCCCccCC
Confidence            3457999999999987654  789999999999999999999998654

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}

Probab=99.86  E-value=4e-23  Score=229.10  Aligned_cols=144  Identities=28%  Similarity=0.355  Sum_probs=119.6

Q ss_pred             ccCCccceeeccC-----------CeEEEEEEehHhhHHHHHHHHHHHHHHhhcchhhHHH-------------------
Q 045449          628 DRFSENNLIGIGN-----------GMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVK-------------------  677 (823)
Q Consensus       628 ~~f~~~~~lg~g~-----------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~-------------------  677 (823)
                      .+|...+.||.|+           +..||||++....    +...+|++++++++||||++                   
T Consensus        40 ~~Y~~~~~lG~G~~g~V~~a~~~~~~~~aikk~~~~~----~~~~~E~~il~~l~h~niv~l~~~~~~~~~~~~~~~~~l  115 (394)
T 4e7w_A           40 IAYTNCKVIGNGSFGVVFQAKLVESDEVAIKKVLQDK----RFKNRELQIMRIVKHPNVVDLKAFFYSNGDKKDEVFLNL  115 (394)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEETTTEEEEEEEEECCT----TSCCHHHHHHHTCCCTTBCCEEEEEEEESSSSSCEEEEE
T ss_pred             ceEEEeEEEeeCCCeEEEEEEECCCCeEEEEEEecCc----chHHHHHHHHHhCCCCCcceEEEEEEecCCCCCceEEEE
Confidence            4678888999886           3448888775432    22347999999999999997                   


Q ss_pred             ------------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeC-CCCcEEEeecccccccCCC
Q 045449          678 ------------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLD-EDMVAHISDFGIAKLLSGE  726 (823)
Q Consensus       678 ------------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~-~~~~~kl~DfGla~~~~~~  726 (823)
                                                    ++.|++.+|+|+|+.+|+||||||+|||++ .++.+||+|||+|+.....
T Consensus       116 v~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~Nill~~~~~~~kL~DFG~a~~~~~~  195 (394)
T 4e7w_A          116 VLEYVPETVYRASRHYAKLKQTMPMLLIKLYMYQLLRSLAYIHSIGICHRDIKPQNLLLDPPSGVLKLIDFGSAKILIAG  195 (394)
T ss_dssp             EEECCSEEHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEETTTTEEEECCCTTCEECCTT
T ss_pred             EeeccCccHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHCCccCCCCCHHHEEEcCCCCcEEEeeCCCcccccCC
Confidence                                          356889999999999999999999999999 7899999999999876443


Q ss_pred             CccccccccccCCCcCcccccCCC-ccccccceehhhhhhccccCCCCCcCCC
Q 045449          727 DQLSKQTQTLATIGYMAPEYGTKG-RVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       727 ~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      ..   ....+||+.|+|||++.+. .|+.++||||+||++|++++|..||.+.
T Consensus       196 ~~---~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~  245 (394)
T 4e7w_A          196 EP---NVSYICSRYYRAPELIFGATNYTTNIDIWSTGCVMAELMQGQPLFPGE  245 (394)
T ss_dssp             CC---CCSSCSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             CC---CcccccCcCccCHHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence            32   2346789999999998765 5899999999999999999999999764

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A

Probab=99.85  E-value=4.7e-23  Score=218.52  Aligned_cols=148  Identities=26%  Similarity=0.281  Sum_probs=109.8

Q ss_pred             hccCCccceeeccC------------CeEEEEEEehHhh--HHHHHHHHHHHHHHhhcchhhHHH---------------
Q 045449          627 TDRFSENNLIGIGN------------GMEVAVKVFHQQY--ERALKSFEDECEVRKRIRHRNLVK---------------  677 (823)
Q Consensus       627 t~~f~~~~~lg~g~------------~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~---------------  677 (823)
                      .++|...+.||.|+            ++.||||++....  ....+.+.+|...++.++||||++               
T Consensus         6 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~iv~~~~~~~~~~~~~lv~   85 (290)
T 3fme_A            6 ADDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNSQEQKRLLMDLDISMRTVDCPFTVTFYGALFREGDVWICM   85 (290)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEC---CHHHHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSSEEEEE
T ss_pred             HHhhhhHHhcCCCCCeEEEEEEecCCCeEEEEEEeecccCcHHHHHHHHHHHHHHHhCCCCeEEEEeeeeeccCCEEEEE
Confidence            36778888888886            6679999997542  233344555666688889999998               


Q ss_pred             ----------------------------HHHHHHHHhhhcCCC-CEEeccCCCCCEEeCCCCcEEEeecccccccCCCCc
Q 045449          678 ----------------------------IISSSLEYLHFGHSI-PIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQ  728 (823)
Q Consensus       678 ----------------------------~~~~~l~~L~~~h~~-~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~  728 (823)
                                                  ++.|++.+|+|+|+. +|+||||||+||+++.++.+||+|||+++.......
T Consensus        86 e~~~~~l~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~  165 (290)
T 3fme_A           86 ELMDTSLDKFYKQVIDKGQTIPEDILGKIAVSIVKALEHLHSKLSVIHRDVKPSNVLINALGQVKMCDFGISGYLVDDVA  165 (290)
T ss_dssp             ECCSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHSCCCCCCCSGGGCEECTTCCEEBCCC-----------
T ss_pred             ehhccchHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhhcCCeecCCCCHHHEEECCCCCEEEeecCCccccccccc
Confidence                                        357889999999997 999999999999999999999999999987643322


Q ss_pred             cccccccccCCCcCccccc----CCCccccccceehhhhhhccccCCCCCcCC
Q 045449          729 LSKQTQTLATIGYMAPEYG----TKGRVSTRGDVCSFGIISGGKETRSMTVGE  777 (823)
Q Consensus       729 ~~~~~~~~gt~~y~aPE~~----~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~  777 (823)
                         .....||+.|+|||++    .+..++.++||||+||+++++++|..||..
T Consensus       166 ---~~~~~~t~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~  215 (290)
T 3fme_A          166 ---KDIDAGCKPYMAPERINPELNQKGYSVKSDIWSLGITMIELAILRFPYDS  215 (290)
T ss_dssp             -------CCCCCCSCHHHHSCCTTC--CCHHHHHHHHHHHHHHHHHTSCSSCC
T ss_pred             ---ccccCCCccccChhhcChhhcCcCCCcHHHHHHHHHHHHHHHHCCCCccc
Confidence               2334699999999995    556789999999999999999999999975

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}

Probab=99.85  E-value=2.6e-23  Score=243.22  Aligned_cols=138  Identities=22%  Similarity=0.337  Sum_probs=111.8

Q ss_pred             eEEEEEEehHhh-HHHHHHHHHHHHHHhhcchhhHHH----------------------------------------HHH
Q 045449          642 MEVAVKVFHQQY-ERALKSFEDECEVRKRIRHRNLVK----------------------------------------IIS  680 (823)
Q Consensus       642 ~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~----------------------------------------~~~  680 (823)
                      ..||||+++... ....++|.+|++++++++|||||+                                        ++.
T Consensus       364 ~~vAvK~~~~~~~~~~~~~~~~E~~il~~l~hpniv~l~~~~~~~~~~lv~E~~~~g~L~~~l~~~~~~l~~~~~~~i~~  443 (613)
T 2ozo_A          364 IDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQAEALMLVMEMAGGGPLHKFLVGKREEIPVSNVAELLH  443 (613)
T ss_dssp             EEEEEEECCCCCSSTTHHHHHHHHHHHTTCCCTTBCCEEEEEESSSEEEEEECCTTCBHHHHHTTCTTTSCHHHHHHHHH
T ss_pred             EEEEEEEcCCCCChHHHHHHHHHHHHHHhCCCCCEeeEEEEeccCCeEEEEEeCCCCcHHHHHhhccCCCCHHHHHHHHH
Confidence            459999997543 234578999999999999999998                                        367


Q ss_pred             HHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCcc-ccccccccCCCcCcccccCCCcccccccee
Q 045449          681 SSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQL-SKQTQTLATIGYMAPEYGTKGRVSTRGDVC  759 (823)
Q Consensus       681 ~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~  759 (823)
                      |++.+|+|+|+.+|+||||||+|||++.++.+||+|||+|+........ .......+|+.|+|||++.+..++.++|||
T Consensus       444 qi~~~L~~LH~~~iiHrDlkp~NILl~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~y~APE~~~~~~~~~~sDvw  523 (613)
T 2ozo_A          444 QVSMGMKYLEEKNFVHRNLAARNVLLVNRHYAKISDFGLSKALGADDSYYTARSAGKWPLKWYAPECINFRKFSSRSDVW  523 (613)
T ss_dssp             HHHHHHHHHHHTTCCCSCCSGGGEEEEETTEEEECCCSTTTTCC--------------CCTTSCHHHHHHCCCCHHHHHH
T ss_pred             HHHHHHHHHHHCCEEcCcCCHHHEEEcCCCcEEEeeccCcccccCCCceeeeccCCCCccceeCHhhhcCCCCCcHHHHH
Confidence            8899999999999999999999999999999999999999876433221 112233467899999999988999999999


Q ss_pred             hhhhhhccccC-CCCCcCCCc
Q 045449          760 SFGIISGGKET-RSMTVGETC  779 (823)
Q Consensus       760 S~Gvv~~~~~~-~~~~~~~~~  779 (823)
                      ||||++|++++ |..||.+..
T Consensus       524 SlGv~l~ellt~G~~Pf~~~~  544 (613)
T 2ozo_A          524 SYGVTMWEALSYGQKPYKKMK  544 (613)
T ss_dssp             HHHHHHHHHHTTSCCTTTTCC
T ss_pred             HHHHHHHHHHHCCCCCCCCCC
Confidence            99999999997 999997653

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7

Probab=99.85  E-value=2.8e-23  Score=239.38  Aligned_cols=150  Identities=25%  Similarity=0.446  Sum_probs=125.5

Q ss_pred             hccCCccceeeccC-----------CeEEEEEEehHhhHHHHHHHHHHHHHHhhcchhhHHH------------------
Q 045449          627 TDRFSENNLIGIGN-----------GMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVK------------------  677 (823)
Q Consensus       627 t~~f~~~~~lg~g~-----------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~------------------  677 (823)
                      .++|...+.||+|+           +..||||+++.... ..++|.+|++++++++||||++                  
T Consensus       266 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~lv~e~~~  344 (535)
T 2h8h_A          266 RESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTM-SPEAFLQEAQVMKKLRHEKLVQLYAVVSEEPIYIVTEYMS  344 (535)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTEEEEEEEECTTSS-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSCEEEECCCT
T ss_pred             hhhhhhheecccCCCeEEEEEEECCCceEEEEEeCCCCC-CHHHHHHHHHHHHhCCCCCEeeEEEEEeeccceEeeehhc
Confidence            45677778899886           35699999975432 2367999999999999999998                  


Q ss_pred             -----------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccc
Q 045449          678 -----------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQ  734 (823)
Q Consensus       678 -----------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~  734 (823)
                                             ++.|++++|+|+|+.+|+||||||+|||++.++.+||+|||+++...... ......
T Consensus       345 ~gsL~~~l~~~~~~~l~~~~~~~i~~qi~~~L~~LH~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~-~~~~~~  423 (535)
T 2h8h_A          345 KGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNE-YTARQG  423 (535)
T ss_dssp             TEEHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGGCEEECCTTSTTTCCCHH-HHTTCS
T ss_pred             CCcHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCCHhhEEEcCCCcEEEcccccceecCCCc-eecccC
Confidence                                   35688999999999999999999999999999999999999998764321 112233


Q ss_pred             cccCCCcCcccccCCCccccccceehhhhhhccccC-CCCCcCCC
Q 045449          735 TLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKET-RSMTVGET  778 (823)
Q Consensus       735 ~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~-~~~~~~~~  778 (823)
                      ..++..|+|||++.++.++.++|||||||++|++++ |..||.+.
T Consensus       424 ~~~~~~y~aPE~~~~~~~~~~sDvwSlGv~l~el~t~g~~P~~~~  468 (535)
T 2h8h_A          424 AKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGM  468 (535)
T ss_dssp             TTSCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHTTTTCCSSTTC
T ss_pred             CcCcccccCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCC
Confidence            457889999999988899999999999999999999 89998764

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*

Probab=99.85  E-value=5.5e-23  Score=221.23  Aligned_cols=148  Identities=25%  Similarity=0.341  Sum_probs=123.3

Q ss_pred             CccceeeccC----------------CeEEEEEEehHhh-HHHHHHHHHHHHHHhhcchhhHHH----------------
Q 045449          631 SENNLIGIGN----------------GMEVAVKVFHQQY-ERALKSFEDECEVRKRIRHRNLVK----------------  677 (823)
Q Consensus       631 ~~~~~lg~g~----------------~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~----------------  677 (823)
                      ...+.||.|+                ++.||||++.... ....+.|.+|++++++++||||++                
T Consensus        34 ~~~~~lG~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv  113 (318)
T 3lxp_A           34 KKIRDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALKADAGPQHRSGWKQEIDILRTLYHEHIIKYKGCCEDAGAASLQLV  113 (318)
T ss_dssp             EEEEEEEECSSEEEEEEEECSCC--CCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTTTEEEEE
T ss_pred             hhhheecCCCCeEEEEEEEccCCCCCCcEEEEEEeccccChHHHHHHHHHHHHHHhCCCcchhhEEEEEecCCCceEEEE
Confidence            5566777765                4569999997543 445678999999999999999998                


Q ss_pred             -------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCcc-cc
Q 045449          678 -------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQL-SK  731 (823)
Q Consensus       678 -------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~-~~  731 (823)
                                               ++.|++.+|.|+|+.+|+||||||+||+++.++.+||+|||+++........ ..
T Consensus       114 ~e~~~~~~L~~~l~~~~~~~~~~~~i~~~l~~~l~~LH~~~ivH~Dikp~Nil~~~~~~~kl~Dfg~a~~~~~~~~~~~~  193 (318)
T 3lxp_A          114 MEYVPLGSLRDYLPRHSIGLAQLLLFAQQICEGMAYLHAQHYIHRDLAARNVLLDNDRLVKIGDFGLAKAVPEGHEYYRV  193 (318)
T ss_dssp             ECCCTTCBHHHHGGGSCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCGGGCEECCTTCSEEEC
T ss_pred             EecccCCcHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhCCccCCCCchheEEEcCCCCEEECCcccccccccccccccc
Confidence                                     3678899999999999999999999999999999999999999877543321 12


Q ss_pred             ccccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCC
Q 045449          732 QTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       732 ~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      .....||+.|+|||++.+..++.++||||+||+++++++|..||...
T Consensus       194 ~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~g~~p~~~~  240 (318)
T 3lxp_A          194 REDGDSPVFWYAPECLKEYKFYYASDVWSFGVTLYELLTHCDSSQSP  240 (318)
T ss_dssp             ---CCCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSH
T ss_pred             ccCCCCCceeeChHHhcCCCCCcHHHHHHHHHHHHHHHhCCCccccc
Confidence            33456888999999999889999999999999999999999998654

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*

Probab=99.85  E-value=3.9e-23  Score=220.60  Aligned_cols=150  Identities=23%  Similarity=0.328  Sum_probs=122.2

Q ss_pred             ccCCccceeeccC----------------CeEEEEEEehHhh-HHHHHHHHHHHHHHhhcchhhHHH-------------
Q 045449          628 DRFSENNLIGIGN----------------GMEVAVKVFHQQY-ERALKSFEDECEVRKRIRHRNLVK-------------  677 (823)
Q Consensus       628 ~~f~~~~~lg~g~----------------~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~-------------  677 (823)
                      ++|...+.||.|+                +..||||++.... ....+.+.+|++++++++||||++             
T Consensus        21 ~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~  100 (302)
T 4e5w_A           21 RFLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKYKGICTEDGGNGI  100 (302)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEECTTSSSCSEEEEEEEEC-----CCHHHHHHHHHHHHTCCCTTBCCEEEEEEC---CCE
T ss_pred             hhhhhhhccCCCCceEEEEEEEccccCccCeEEEEEEecccccchhHHHHHHHHHHHHhCCCCCeeeeeeEEecCCCceE
Confidence            3456666777664                5679999997543 233478999999999999999998             


Q ss_pred             ------------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCC
Q 045449          678 ------------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGED  727 (823)
Q Consensus       678 ------------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~  727 (823)
                                                    ++.|++.+|+|+|+.+|+||||||+||+++.++.+||+|||+++......
T Consensus       101 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~  180 (302)
T 4e5w_A          101 KLIMEFLPSGSLKEYLPKNKNKINLKQQLKYAVQICKGMDYLGSRQYVHRDLAARNVLVESEHQVKIGDFGLTKAIETDK  180 (302)
T ss_dssp             EEEEECCTTCBHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEEETTEEEECCCTTCEECCTTC
T ss_pred             EEEEEeCCCCcHHHHHHhccccCCHHHHHHHHHHHHHHHHHhhcCCcccCCCchheEEEcCCCCEEECcccccccccCCC
Confidence                                          35688999999999999999999999999999999999999998765443


Q ss_pred             cc-ccccccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCC
Q 045449          728 QL-SKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGE  777 (823)
Q Consensus       728 ~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~  777 (823)
                      .. .......||..|+|||++.+..++.++||||+||+++++++|..|+..
T Consensus       181 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~  231 (302)
T 4e5w_A          181 EYYTVKDDRDSPVFWYAPECLMQSKFYIASDVWSFGVTLHELLTYCDSDSS  231 (302)
T ss_dssp             CEEECCCCTTCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGS
T ss_pred             cceeccCCCCCCccccCCeeecCCCCCcchhHHHHHHHHHHHHHccCCCcc
Confidence            21 223345688899999999888999999999999999999999887644

>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}

Probab=99.85  E-value=6.5e-23  Score=224.71  Aligned_cols=154  Identities=27%  Similarity=0.325  Sum_probs=120.6

Q ss_pred             HHHHHHhccCCccceeeccC------------CeEEEEEEehHhhHHHHHHHHHHHHHHhhcchhhHHH-----------
Q 045449          621 HELLRATDRFSENNLIGIGN------------GMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVK-----------  677 (823)
Q Consensus       621 ~~l~~at~~f~~~~~lg~g~------------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~-----------  677 (823)
                      .+.....++|...+.||.|+            +..||||++.... .....+.+|++.+++++||||++           
T Consensus        16 ~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~-~~~~~~~~~~~~l~~l~h~niv~~~~~~~~~~~~   94 (360)
T 3e3p_A           16 ERSRKEMDRFQVERMAGQGTFGTVQLGKEKSTGMSVAIKKVIQDP-RFRNRELQIMQDLAVLHHPNIVQLQSYFYTLGER   94 (360)
T ss_dssp             HHHHHHHTTEEEC----------CEEEEETTTCCEEEEEEEECCT-TCCCHHHHHHHHHHHHCCTTBCCEEEEEEEECSS
T ss_pred             hhchhhccceEEEEEEecCCCeEEEEEEECCCCCEEEEEEEecCc-cccHHHHHHHHHHHhcCCCCcccHHHhhhccccc
Confidence            55667788999999999886            6679999885432 22245677888889999999987           


Q ss_pred             ---------------------------------------HHHHHHHHhhhcC--CCCEEeccCCCCCEEeCC-CCcEEEe
Q 045449          678 ---------------------------------------IISSSLEYLHFGH--SIPIIHCDLKPSNVLLDE-DMVAHIS  715 (823)
Q Consensus       678 ---------------------------------------~~~~~l~~L~~~h--~~~ivHrdlk~~NiLl~~-~~~~kl~  715 (823)
                                                             ++.|++.+|+|+|  +.+|+||||||+|||++. ++.+||+
T Consensus        95 ~~~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~~~ivH~Dlkp~NIll~~~~~~~kl~  174 (360)
T 3e3p_A           95 DRRDIYLNVVMEYVPDTLHRCCRNYYRRQVAPPPILIKVFLFQLIRSIGCLHLPSVNVCHRDIKPHNVLVNEADGTLKLC  174 (360)
T ss_dssp             CTTCEEEEEEEECCSCBHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHTSTTTCCBCSCCCGGGEEEETTTTEEEEC
T ss_pred             cccceeEEEEeecccccHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHhCCCCCeecCcCCHHHEEEeCCCCcEEEe
Confidence                                                   2457788888888  999999999999999996 8999999


Q ss_pred             ecccccccCCCCccccccccccCCCcCcccccCCCc-cccccceehhhhhhccccCCCCCcCCC
Q 045449          716 DFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGR-VSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       716 DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~-~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      |||+++.......   .....||+.|+|||++.+.. ++.++|||||||++|++++|..||.+.
T Consensus       175 Dfg~a~~~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~  235 (360)
T 3e3p_A          175 DFGSAKKLSPSEP---NVAYICSRYYRAPELIFGNQHYTTAVDIWSVGCIFAEMMLGEPIFRGD  235 (360)
T ss_dssp             CCTTCBCCCTTSC---CCSTTSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             eCCCceecCCCCC---cccccCCcceeCHHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCcCCC
Confidence            9999987654332   23457899999999986654 899999999999999999999999764

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}

Probab=99.85  E-value=1e-23  Score=227.76  Aligned_cols=161  Identities=25%  Similarity=0.339  Sum_probs=122.8

Q ss_pred             ccccCHHHHHHHhccCCccceeeccC------------CeEEEEEEehHhhHHHHHHHHHHHHHHhhc-chhhHHH----
Q 045449          615 IRRFSYHELLRATDRFSENNLIGIGN------------GMEVAVKVFHQQYERALKSFEDECEVRKRI-RHRNLVK----  677 (823)
Q Consensus       615 ~~~~~~~~l~~at~~f~~~~~lg~g~------------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~----  677 (823)
                      .+.+++.++....++|...+.||.|+            +..||||++.... ...+.+.+|+++++++ +||||++    
T Consensus        11 ~~~~~~~~l~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~-~~~~~~~~e~~~l~~l~~h~~i~~~~~~   89 (326)
T 2x7f_A           11 LDEIDLSALRDPAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTG-DEEEEIKQEINMLKKYSHHRNIATYYGA   89 (326)
T ss_dssp             -----CCCCCCCTTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCS-STTHHHHHHHHHHHHHCCSTTBCCEEEE
T ss_pred             chhccchhccCCCCcEEEEEEeccCCCEEEEEEEECCCCCeEEEEEEecCc-ccHHHHHHHHHHHHhccCCCCeeeeeeE
Confidence            34455566666788999999999886            5679999986432 2236788999999999 8999987    


Q ss_pred             --------------------------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEE
Q 045449          678 --------------------------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAH  713 (823)
Q Consensus       678 --------------------------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~k  713 (823)
                                                                  ++.|++.+|+|+|+.+|+||||||+||+++.++.+|
T Consensus        90 ~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~dlkp~NIl~~~~~~~k  169 (326)
T 2x7f_A           90 FIKKNPPGMDDQLWLVMEFCGAGSVTDLIKNTKGNTLKEEWIAYICREILRGLSHLHQHKVIHRDIKGQNVLLTENAEVK  169 (326)
T ss_dssp             EEECC--CCCCEEEEEEECCTTEEHHHHHHHSGGGCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCSGGGEEECTTCCEE
T ss_pred             EeeccCccccceEEEEEEcCCCCcHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCcHHHEEEcCCCCEE
Confidence                                                        356889999999999999999999999999999999


Q ss_pred             EeecccccccCCCCccccccccccCCCcCcccccC-----CCccccccceehhhhhhccccCCCCCcCCC
Q 045449          714 ISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGT-----KGRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       714 l~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~-----~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      |+|||+++.......  ......||+.|+|||++.     ...++.++|||||||+++++++|..||.+.
T Consensus       170 l~Dfg~~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~  237 (326)
T 2x7f_A          170 LVDFGVSAQLDRTVG--RRNTFIGTPYWMAPEVIACDENPDATYDFKSDLWSLGITAIEMAEGAPPLCDM  237 (326)
T ss_dssp             ECCCTTTC---------------CCGGGCCHHHHC--------CCTTHHHHHHHHHHHHHHHSSCTTTTS
T ss_pred             EeeCcCceecCcCcc--ccccccCCccccChhhhccccccCcCCCccchHHHHHHHHHHHHhCCCCCCCC
Confidence            999999987543211  223457999999999986     566899999999999999999999998764

>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II}

Probab=99.85  E-value=6.9e-23  Score=226.52  Aligned_cols=148  Identities=26%  Similarity=0.347  Sum_probs=121.0

Q ss_pred             HHHhccCCccceeeccC------------CeEEEEEEehHhhHHHHHHHHHHHHHHhhcchhhHHH--------------
Q 045449          624 LRATDRFSENNLIGIGN------------GMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVK--------------  677 (823)
Q Consensus       624 ~~at~~f~~~~~lg~g~------------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~--------------  677 (823)
                      ....++|...+.||.|+            |..||||++....    +...+|++++++++|||||+              
T Consensus         3 ~~~~~~y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~~~~~~----~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~~~   78 (383)
T 3eb0_A            3 ETSSKKYSLGKTLGTGSFGIVCEVFDIESGKRFALKKVLQDP----RYKNRELDIMKVLDHVNIIKLVDYFYTTGDEEPK   78 (383)
T ss_dssp             ---CTTEEEEEEEECC-CEEEEEEEETTTCCEEEEEEEECCT----TSCCHHHHHHTTCCCTTBCCEEEEEEEC------
T ss_pred             ccccceEEEEEEEEeccCEEEEEEEECCCCCEEEEEEEecCc----chHHHHHHHHHHcCCCCccchhheeeecCccccc
Confidence            34567888899999986            5679999886442    23457999999999999863              


Q ss_pred             -------------------------------------------------------------------HHHHHHHHhhhcC
Q 045449          678 -------------------------------------------------------------------IISSSLEYLHFGH  690 (823)
Q Consensus       678 -------------------------------------------------------------------~~~~~l~~L~~~h  690 (823)
                                                                                         ++.|++.+|+|+|
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH  158 (383)
T 3eb0_A           79 PPQPPDDHNKLGGKNNGVNNHHKSVIVNPSQNKYLNVIMEYVPDTLHKVLKSFIRSGRSIPMNLISIYIYQLFRAVGFIH  158 (383)
T ss_dssp             -------------------------------CCEEEEEECCCSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccccCCCceEEEEEEecCCccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence                                                                               2468899999999


Q ss_pred             CCCEEeccCCCCCEEeC-CCCcEEEeecccccccCCCCccccccccccCCCcCcccccCCC-ccccccceehhhhhhccc
Q 045449          691 SIPIIHCDLKPSNVLLD-EDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKG-RVSTRGDVCSFGIISGGK  768 (823)
Q Consensus       691 ~~~ivHrdlk~~NiLl~-~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~S~Gvv~~~~  768 (823)
                      +.||+||||||+||+++ .++.+||+|||+|+.......   .....||+.|+|||++.+. .++.++||||+||+++++
T Consensus       159 ~~gi~H~Dikp~Nil~~~~~~~~kl~Dfg~a~~~~~~~~---~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el  235 (383)
T 3eb0_A          159 SLGICHRDIKPQNLLVNSKDNTLKLCDFGSAKKLIPSEP---SVAYICSRFYRAPELMLGATEYTPSIDLWSIGCVFGEL  235 (383)
T ss_dssp             TTTEECSCCCGGGEEEETTTTEEEECCCTTCEECCTTSC---CCCCCCCSSCCCHHHHTTCSSCCTHHHHHHHHHHHHHH
T ss_pred             HCcCccCccCHHHEEEcCCCCcEEEEECCCCcccCCCCC---CcCcccCCCccCHHHhcCCCCCCcchhhhhHHHHHHHH
Confidence            99999999999999997 688999999999987644332   2345789999999988765 489999999999999999


Q ss_pred             cCCCCCcCCC
Q 045449          769 ETRSMTVGET  778 (823)
Q Consensus       769 ~~~~~~~~~~  778 (823)
                      ++|..||.+.
T Consensus       236 l~g~~pf~~~  245 (383)
T 3eb0_A          236 ILGKPLFSGE  245 (383)
T ss_dssp             HHSSCSSCCS
T ss_pred             HhCCCCCCCC
Confidence            9999999764

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}

Probab=99.85  E-value=1.1e-22  Score=233.32  Aligned_cols=149  Identities=26%  Similarity=0.367  Sum_probs=123.3

Q ss_pred             hccCCccceeeccC------------CeEEEEEEehHhhH-------------HHHHHHHHHHHHHhhcchhhHHH----
Q 045449          627 TDRFSENNLIGIGN------------GMEVAVKVFHQQYE-------------RALKSFEDECEVRKRIRHRNLVK----  677 (823)
Q Consensus       627 t~~f~~~~~lg~g~------------~~~vavK~~~~~~~-------------~~~~~~~~E~~~l~~l~h~niv~----  677 (823)
                      .++|...+.||.|+            +..||||++.....             ...+.+.+|++++++++||||++    
T Consensus        35 ~~~Y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~  114 (504)
T 3q5i_A           35 GESYFKVRKLGSGAYGEVLLCKEKNGHSEKAIKVIKKSQFDKGRYSDDNKNIEKFHEEIYNEISLLKSLDHPNIIKLFDV  114 (504)
T ss_dssp             GGTEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEC----------------CTHHHHHHHHHHHHTCCCTTBCCEEEE
T ss_pred             ccceEEEeEecccCCeEEEEEEECCCCcEEEEEEEEhhhcccccccccchhhHHHHHHHHHHHHHHHhCCCCCCCeEEEE
Confidence            57788889999886            56799999864321             23467899999999999999998    


Q ss_pred             ------------------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCC---cEEEeecc
Q 045449          678 ------------------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDM---VAHISDFG  718 (823)
Q Consensus       678 ------------------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~---~~kl~DfG  718 (823)
                                                          ++.|++.+|+|+|+.+|+||||||+||+++.++   .+||+|||
T Consensus       115 ~~~~~~~~lv~e~~~gg~L~~~l~~~~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg  194 (504)
T 3q5i_A          115 FEDKKYFYLVTEFYEGGELFEQIINRHKFDECDAANIMKQILSGICYLHKHNIVHRDIKPENILLENKNSLLNIKIVDFG  194 (504)
T ss_dssp             EECSSEEEEEEECCTTCBHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEESSTTCCSSEEECCCT
T ss_pred             EEcCCEEEEEEecCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeEeCCCcHHHEEEecCCCCccEEEEECC
Confidence                                                467899999999999999999999999998765   69999999


Q ss_pred             cccccCCCCccccccccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCCc
Q 045449          719 IAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGETC  779 (823)
Q Consensus       719 la~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~~  779 (823)
                      +|+.......   ....+||+.|+|||++. +.|+.++||||+||++|++++|..||.+..
T Consensus       195 ~a~~~~~~~~---~~~~~gt~~y~aPE~~~-~~~~~~~DiwslG~il~~ll~g~~pf~~~~  251 (504)
T 3q5i_A          195 LSSFFSKDYK---LRDRLGTAYYIAPEVLK-KKYNEKCDVWSCGVIMYILLCGYPPFGGQN  251 (504)
T ss_dssp             TCEECCTTSC---BCCCCSCTTTCCHHHHT-TCBCTHHHHHHHHHHHHHHHHSSCSSCCSS
T ss_pred             CCEEcCCCCc---cccccCCcCCCCHHHhc-cCCCchHHHHHHHHHHHHHHhCCCCCCCCC
Confidence            9987654322   34467999999999976 569999999999999999999999997653

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}

Probab=99.85  E-value=4.9e-23  Score=229.52  Aligned_cols=136  Identities=24%  Similarity=0.301  Sum_probs=106.4

Q ss_pred             CeEEEEEEehHhhHHHHHHHHHHHHHHhhcchhhHHH-------------------------------------------
Q 045449          641 GMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVK-------------------------------------------  677 (823)
Q Consensus       641 ~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~-------------------------------------------  677 (823)
                      +..||||++....  ..+.+.+|++++++++|||||+                                           
T Consensus        48 ~~~vaiK~~~~~~--~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~l  125 (405)
T 3rgf_A           48 DKDYALKQIEGTG--ISMSACREIALLRELKHPNVISLQKVFLSHADRKVWLLFDYAEHDLWHIIKFHRASKANKKPVQL  125 (405)
T ss_dssp             CCCEEEEECSSSS--CCHHHHHHHHHHHHCCCTTBCCCCEEEEETTTTEEEEEEECCSEEHHHHHHHHHHHC-------C
T ss_pred             CeEEEEEEECCCC--CCHHHHHHHHHHHhcCCCCeeeEeeEEecCCCCeEEEEEeCCCCCHHHHHHHhccccccccccCC
Confidence            4569999986442  1246889999999999999997                                           


Q ss_pred             -------HHHHHHHHhhhcCCCCEEeccCCCCCEEe----CCCCcEEEeecccccccCCCCc-cccccccccCCCcCccc
Q 045449          678 -------IISSSLEYLHFGHSIPIIHCDLKPSNVLL----DEDMVAHISDFGIAKLLSGEDQ-LSKQTQTLATIGYMAPE  745 (823)
Q Consensus       678 -------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl----~~~~~~kl~DfGla~~~~~~~~-~~~~~~~~gt~~y~aPE  745 (823)
                             ++.|++.+|+|+|+.+|+||||||+|||+    +.++.+||+|||+|+....... .......+||+.|+|||
T Consensus       126 ~~~~~~~i~~qi~~al~~LH~~~ivH~Dlkp~NIll~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE  205 (405)
T 3rgf_A          126 PRGMVKSLLYQILDGIHYLHANWVLHRDLKPANILVMGEGPERGRVKIADMGFARLFNSPLKPLADLDPVVVTFWYRAPE  205 (405)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECCSSTTTTCEEECCTTCCC----------------CCCTTCCHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHhCCEeCCCcCHHHeEEecCCCCCCcEEEEECCCceecCCCCcccccCCCceecCcccCch
Confidence                   24588999999999999999999999999    6778999999999987643221 12234567999999999


Q ss_pred             ccCCC-ccccccceehhhhhhccccCCCCCcCCC
Q 045449          746 YGTKG-RVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       746 ~~~~~-~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      ++.+. .++.++||||+||++|++++|..||...
T Consensus       206 ~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~  239 (405)
T 3rgf_A          206 LLLGARHYTKAIDIWAIGCIFAELLTSEPIFHCR  239 (405)
T ss_dssp             HHTTCCSCCHHHHHHHHHHHHHHHHHSSCTTCCC
T ss_pred             hhcCCCcccchhhhHHHHHHHHHHHhCCCCCCCc
Confidence            98874 4899999999999999999999999654

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.85  E-value=2.3e-21  Score=194.89  Aligned_cols=177  Identities=22%  Similarity=0.220  Sum_probs=144.6

Q ss_pred             eEEEeecCCCCccCCccccccccccceEEecCCcceeccCccccCcccccEEEcccCcCCCCchhcccccCCCCEEEccC
Q 045449          333 KVLIVTGNPLDGILPKSIGNFSLSLETILMANCSISGNIPQVVGNLSNLLVLELGGNNLTGPIPVTFSQLQTLQAFDLTR  412 (823)
Q Consensus       333 ~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~  412 (823)
                      +.++.+++.++. +|..+   +.+|++|++++|++++..+..|..+++|++|++++|++++..+..|..+++|++|+|++
T Consensus        10 ~~v~c~~~~l~~-~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~   85 (208)
T 2o6s_A           10 TTVECYSQGRTS-VPTGI---PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST   85 (208)
T ss_dssp             TEEECCSSCCSS-CCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CEEEecCCCccC-CCCCC---CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCC
Confidence            355666666653 34333   25788888888888877777788889999999999999876667788889999999999


Q ss_pred             CCCCCcchHhhhcCCCCCEEEcccCcCcccccccccCCCCCCeEeccCCccccccchhhhccCCCcEEeccccccccccC
Q 045449          413 NKLAGPITDELCHLARLHSLVLQGNKFSGSIPSCLGNLTSVRVLYLGLNIFTSVLSSTIWNLKDILFIDVSSNFLDGPLS  492 (823)
Q Consensus       413 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~~p  492 (823)
                      |++++..+..|..+++|++|+|++|++++..+..|..+++|+.|+|++|++++..+..+..+++|+.|++++|.+.+.  
T Consensus        86 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~--  163 (208)
T 2o6s_A           86 NQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT--  163 (208)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCC--
T ss_pred             CcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecC--
Confidence            999877777788889999999999999877777788899999999999999987777788899999999999988754  


Q ss_pred             ccccCCCCCcEEEcccCCCCCCCCCccc
Q 045449          493 LDIGNLKVVIGLDFSRNNLSGDIPITIG  520 (823)
Q Consensus       493 ~~~~~l~~L~~L~ls~N~l~g~ip~~~~  520 (823)
                           ++.|++|+++.|+++|.||..++
T Consensus       164 -----~~~l~~L~~~~n~~~g~ip~~~~  186 (208)
T 2o6s_A          164 -----CPGIRYLSEWINKHSGVVRNSAG  186 (208)
T ss_dssp             -----TTTTHHHHHHHHHCTTTBBCTTS
T ss_pred             -----CCCHHHHHHHHHhCCceeeccCc
Confidence                 45788899999999988888774

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}

Probab=99.85  E-value=1.2e-22  Score=226.65  Aligned_cols=146  Identities=15%  Similarity=0.199  Sum_probs=117.8

Q ss_pred             hccCCccceeeccC------------CeEEEEEEehHhh---HHHHHHHHHHHHHHhhcch-hh----------------
Q 045449          627 TDRFSENNLIGIGN------------GMEVAVKVFHQQY---ERALKSFEDECEVRKRIRH-RN----------------  674 (823)
Q Consensus       627 t~~f~~~~~lg~g~------------~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h-~n----------------  674 (823)
                      +..|...++||+|+            |..||||++....   ....+.|.+|+.+++.++| +|                
T Consensus        77 ~~~~~~~~~LG~G~fG~Vy~a~~~~~g~~vAvK~~~~~~~~~~~~~~~~~~E~~~~~~l~~~~~~~~~~~~~~~~~~~~~  156 (413)
T 3dzo_A           77 PRTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDL  156 (413)
T ss_dssp             CEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEECCSCC----CCHHHHHHHHGGGGSTTCCSHHHHHHHTCBCCCCEE
T ss_pred             ceeEEEecccccCCCEEEEEEEecCCCCceEEEEEecCCCccHHHHHHHHHHHHHHHhhccCCCHHHHHHhcccccchhh
Confidence            44577778899886            6779999987322   2335678999999988876 11                


Q ss_pred             --------------------------------------------------------HHHHHHHHHHHhhhcCCCCEEecc
Q 045449          675 --------------------------------------------------------LVKIISSSLEYLHFGHSIPIIHCD  698 (823)
Q Consensus       675 --------------------------------------------------------iv~~~~~~l~~L~~~h~~~ivHrd  698 (823)
                                                                              +..++.|++++|+|+|+.+|+|||
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~iiHrD  236 (413)
T 3dzo_A          157 VKDPQKKKMIRVRLDERDMWVLSRFFLYPRMQSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHHYGLVHTY  236 (413)
T ss_dssp             EECCC---------------CCSEEEEEECCSEEHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHHTTEECSC
T ss_pred             cccCCCCccccccCCCccccccceEEEeehhcCCHHHHHHHhhcccccCCCCCHHHHHHHHHHHHHHHHHHHhCCcccCC
Confidence                                                                    111347899999999999999999


Q ss_pred             CCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCccccc----------CCCccccccceehhhhhhccc
Q 045449          699 LKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYG----------TKGRVSTRGDVCSFGIISGGK  768 (823)
Q Consensus       699 lk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~----------~~~~~~~~~Dv~S~Gvv~~~~  768 (823)
                      |||+|||++.++.+||+|||+++.....     ....+| +.|+|||++          .+..|+.++|||||||++|++
T Consensus       237 iKp~NILl~~~~~~kL~DFG~a~~~~~~-----~~~~~g-~~y~aPE~~~~~~~~~~~~~~~~~~~~~DvwSlGvil~el  310 (413)
T 3dzo_A          237 LRPVDIVLDQRGGVFLTGFEHLVRDGAS-----AVSPIG-RGFAPPETTAERMLPFGQHHPTLMTFAFDTWTLGLAIYWI  310 (413)
T ss_dssp             CCGGGEEECTTCCEEECCGGGCEETTEE-----ECCCCC-TTTCCHHHHHHHTSTTGGGCCEEECHHHHHHHHHHHHHHH
T ss_pred             cccceEEEecCCeEEEEeccceeecCCc-----cccCCC-CceeCchhhhccccccccccCcCCCchhhHHHHHHHHHHH
Confidence            9999999999999999999999865322     334567 999999998          566689999999999999999


Q ss_pred             cCCCCCcCCC
Q 045449          769 ETRSMTVGET  778 (823)
Q Consensus       769 ~~~~~~~~~~  778 (823)
                      ++|+.||...
T Consensus       311 ltg~~Pf~~~  320 (413)
T 3dzo_A          311 WCADLPNTDD  320 (413)
T ss_dssp             HHSSCCCCTT
T ss_pred             HHCCCCCCCc
Confidence            9999999764

>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens}

Probab=99.85  E-value=9.3e-23  Score=219.36  Aligned_cols=152  Identities=26%  Similarity=0.381  Sum_probs=121.6

Q ss_pred             ccCCccceeeccC------------CeEEEEEEehHhhHHHHHHHHHHHHHHhhcchhhHHH------------------
Q 045449          628 DRFSENNLIGIGN------------GMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVK------------------  677 (823)
Q Consensus       628 ~~f~~~~~lg~g~------------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~------------------  677 (823)
                      ++|...+.||.|+            ++.||||++........+++.+|++++++++||||++                  
T Consensus        11 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~~   90 (320)
T 2i6l_A           11 SRYMDLKPLGCGGNGLVFSAVDNDCDKRVAIKKIVLTDPQSVKHALREIKIIRRLDHDNIVKVFEILGPSGSQLTDDVGS   90 (320)
T ss_dssp             TTEEEEEECC-----CEEEEEETTTTEEEEEEEEECCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEECTTSCBCCC----
T ss_pred             CceeEEEEeccCCCeEEEEEEECCCCeEEEEEEEecCChHHHHHHHHHHHHHHhcCCCCeeEEEEecccccccccccccc
Confidence            5667777777774            6789999997666666788999999999999999875                  


Q ss_pred             ----------------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeC-CCCcEEEeecccccc
Q 045449          678 ----------------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLD-EDMVAHISDFGIAKL  722 (823)
Q Consensus       678 ----------------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~-~~~~~kl~DfGla~~  722 (823)
                                                        ++.|++++|+|+|+.+|+||||||+||+++ +++.+||+|||+++.
T Consensus        91 ~~~~~~~~lv~e~~~~~L~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~~kl~Dfg~~~~  170 (320)
T 2i6l_A           91 LTELNSVYIVQEYMETDLANVLEQGPLLEEHARLFMYQLLRGLKYIHSANVLHRDLKPANLFINTEDLVLKIGDFGLARI  170 (320)
T ss_dssp             CCSCSEEEEEEECCSEEHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCSGGGEEEETTTTEEEECCCTTCBC
T ss_pred             ccccCceeEEeeccCCCHHHHhhcCCccHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHEEEcCCCCeEEEccCccccc
Confidence                                              356889999999999999999999999997 567999999999987


Q ss_pred             cCCCCc-cccccccccCCCcCcccccCC-CccccccceehhhhhhccccCCCCCcCCCc
Q 045449          723 LSGEDQ-LSKQTQTLATIGYMAPEYGTK-GRVSTRGDVCSFGIISGGKETRSMTVGETC  779 (823)
Q Consensus       723 ~~~~~~-~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~~  779 (823)
                      ...... ........||+.|+|||++.+ ..++.++|||||||+++++++|..||....
T Consensus       171 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~  229 (320)
T 2i6l_A          171 MDPHYSHKGHLSEGLVTKWYRSPRLLLSPNNYTKAIDMWAAGCIFAEMLTGKTLFAGAH  229 (320)
T ss_dssp             C--------CCCGGGSCCTTCCHHHHHCTTCCCHHHHHHHHHHHHHHHHHSSCSSCCSS
T ss_pred             cCCCcccccccccccccccccCcHHhcCcccCCchhhhHhHHHHHHHHHhCCCCCCCCC
Confidence            643211 112234568999999998765 678999999999999999999999997643

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*

Probab=99.85  E-value=5.8e-23  Score=220.50  Aligned_cols=159  Identities=23%  Similarity=0.355  Sum_probs=121.8

Q ss_pred             HHHHHHHhccCCccceeeccC-----------CeEEEEEEehHh--hHHHHHHHHHHHHHHhhcch--hhHHH-------
Q 045449          620 YHELLRATDRFSENNLIGIGN-----------GMEVAVKVFHQQ--YERALKSFEDECEVRKRIRH--RNLVK-------  677 (823)
Q Consensus       620 ~~~l~~at~~f~~~~~lg~g~-----------~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h--~niv~-------  677 (823)
                      +..+.-..++|...+.||.|+           +..||||++...  .....+.+.+|++++.+++|  +||++       
T Consensus        20 ~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~   99 (313)
T 3cek_A           20 FQSMSVKGRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEIT   99 (313)
T ss_dssp             CCEEEETTEEEEEEEEEECCSSEEEEEEECTTCCEEEEEEEECSSCCHHHHHHHHHHHHHHHHHGGGCTTBCCEEEEEEC
T ss_pred             eeeeeeccceEEEEEEecCCCCEEEEEEEcCCCcEEEEEEeccccccccchHHHHHHHHHHHhccccCCceEEEEEEeec
Confidence            333334456788888888876           567999998643  24556789999999999975  89987       


Q ss_pred             --------------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCC
Q 045449          678 --------------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSG  725 (823)
Q Consensus       678 --------------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~  725 (823)
                                                      ++.|++++|+|+|+.+|+||||||+||++++ +.+||+|||+++....
T Consensus       100 ~~~~~lv~e~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~dlkp~NIl~~~-~~~kL~Dfg~~~~~~~  178 (313)
T 3cek_A          100 DQYIYMVMECGNIDLNSWLKKKKSIDPWERKSYWKNMLEAVHTIHQHGIVHSDLKPANFLIVD-GMLKLIDFGIANQMQP  178 (313)
T ss_dssp             SSEEEEEECCCSEEHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEEET-TEEEECCCSSSCC---
T ss_pred             CCEEEEEEecCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCceecCCCcccEEEEC-CeEEEeeccccccccC
Confidence                                            4678999999999999999999999999964 8999999999987654


Q ss_pred             CCccccccccccCCCcCcccccCC-----------CccccccceehhhhhhccccCCCCCcCCCc
Q 045449          726 EDQLSKQTQTLATIGYMAPEYGTK-----------GRVSTRGDVCSFGIISGGKETRSMTVGETC  779 (823)
Q Consensus       726 ~~~~~~~~~~~gt~~y~aPE~~~~-----------~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~~  779 (823)
                      ...........||+.|+|||++.+           ..++.++|||||||+++++++|..||.+..
T Consensus       179 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~  243 (313)
T 3cek_A          179 DTTSVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQII  243 (313)
T ss_dssp             -----------CCGGGCCHHHHTTCC----------CCCHHHHHHHHHHHHHHHHHSSCTTTTCC
T ss_pred             ccccccccCCCCCCCcCCHHHHhhcccccccccccccCCchHHHHHHHHHHHHHHhCCCchhhHH
Confidence            332222334579999999999865           468899999999999999999999997653

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.85  E-value=3.5e-21  Score=193.59  Aligned_cols=163  Identities=20%  Similarity=0.238  Sum_probs=131.3

Q ss_pred             CCceEEEeecCCCCccCCccccccccccceEEecCCcceeccCccccCcccccEEEcccCcCCCCchhcccccCCCCEEE
Q 045449          330 KKLKVLIVTGNPLDGILPKSIGNFSLSLETILMANCSISGNIPQVVGNLSNLLVLELGGNNLTGPIPVTFSQLQTLQAFD  409 (823)
Q Consensus       330 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~  409 (823)
                      ++|++|++++|.+++..+..+..+ .+|++|++++|++++..+..|..+++|++|+|++|++++..+..|..+++|++|+
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  106 (208)
T 2o6s_A           28 AQTTYLDLETNSLKSLPNGVFDEL-TSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELA  106 (208)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTC-TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCcEEEcCCCccCcCChhhhccc-ccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEE
Confidence            356666666666666555556666 5777778877777776667778888888888888888876667788888899999


Q ss_pred             ccCCCCCCcchHhhhcCCCCCEEEcccCcCcccccccccCCCCCCeEeccCCccccccchhhhccCCCcEEecccccccc
Q 045449          410 LTRNKLAGPITDELCHLARLHSLVLQGNKFSGSIPSCLGNLTSVRVLYLGLNIFTSVLSSTIWNLKDILFIDVSSNFLDG  489 (823)
Q Consensus       410 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g  489 (823)
                      |++|++++..+..|..+++|+.|+|++|++++..+..+..+++|+.|+|++|.+++.       ++.|++|+++.|.++|
T Consensus       107 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~L~~~~n~~~g  179 (208)
T 2o6s_A          107 LNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSG  179 (208)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCC-------TTTTHHHHHHHHHCTT
T ss_pred             cCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecC-------CCCHHHHHHHHHhCCc
Confidence            999998877777788888999999999999877777788889999999999988763       5578899999999999


Q ss_pred             ccCccccCCCC
Q 045449          490 PLSLDIGNLKV  500 (823)
Q Consensus       490 ~~p~~~~~l~~  500 (823)
                      .+|.++++++.
T Consensus       180 ~ip~~~~~l~~  190 (208)
T 2o6s_A          180 VVRNSAGSVAP  190 (208)
T ss_dssp             TBBCTTSSBCT
T ss_pred             eeeccCccccC
Confidence            99998887765

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=99.85  E-value=3.3e-23  Score=216.83  Aligned_cols=149  Identities=25%  Similarity=0.367  Sum_probs=124.0

Q ss_pred             ccCCccceeeccC-----------CeEEEEEEehHhhHHHHHHHHHHHHHHhhcchhhHHH-------------------
Q 045449          628 DRFSENNLIGIGN-----------GMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVK-------------------  677 (823)
Q Consensus       628 ~~f~~~~~lg~g~-----------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~-------------------  677 (823)
                      ++|...+.||.|+           +..||||++..... ..+.+.+|++++++++||||++                   
T Consensus         8 ~~y~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~~-~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~   86 (267)
T 3t9t_A            8 SELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGAM-SEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVTEFME   86 (267)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTTB-CHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSCEEEECCCT
T ss_pred             hheeeeeEecCCCceeEEEEEecCCCeEEEEEccccCC-CHHHHHHHHHHHHhCCCCCEeeEEEEEccCCCeEEEEeCCC
Confidence            4666677788775           46799999976532 2367999999999999999998                   


Q ss_pred             ----------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCcccccccc
Q 045449          678 ----------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQT  735 (823)
Q Consensus       678 ----------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~  735 (823)
                                            ++.|++++|+|+|+.+++||||||+||+++.++.+||+|||+++...... .......
T Consensus        87 ~~~L~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~Nili~~~~~~kl~dfg~~~~~~~~~-~~~~~~~  165 (267)
T 3t9t_A           87 HGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLEEACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQ-YTSSTGT  165 (267)
T ss_dssp             TCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTTCCCSSCCGGGEEECGGGCEEECCTTGGGGBCCHH-HHSTTST
T ss_pred             CCcHHHHHhhCcccCCHHHHHHHHHHHHHHHHHHHhCCcccCCCchheEEECCCCCEEEccccccccccccc-ccccccc
Confidence                                  35788999999999999999999999999999999999999998764322 1222345


Q ss_pred             ccCCCcCcccccCCCccccccceehhhhhhccccC-CCCCcCCC
Q 045449          736 LATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKET-RSMTVGET  778 (823)
Q Consensus       736 ~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~-~~~~~~~~  778 (823)
                      .+|+.|+|||++.+..++.++||||+|++++++++ |..||...
T Consensus       166 ~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~  209 (267)
T 3t9t_A          166 KFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENR  209 (267)
T ss_dssp             TCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTC
T ss_pred             cccccccChhhhcCCCccchhchhhhHHHHHHHhccCCCCCCCC
Confidence            67889999999988889999999999999999999 88888764

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ...

Probab=99.85  E-value=6e-23  Score=216.91  Aligned_cols=149  Identities=26%  Similarity=0.393  Sum_probs=122.2

Q ss_pred             ccCCccceeeccC------------CeEEEEEEehHhhH------HHHHHHHHHHHHHhhcchhhHHH------------
Q 045449          628 DRFSENNLIGIGN------------GMEVAVKVFHQQYE------RALKSFEDECEVRKRIRHRNLVK------------  677 (823)
Q Consensus       628 ~~f~~~~~lg~g~------------~~~vavK~~~~~~~------~~~~~~~~E~~~l~~l~h~niv~------------  677 (823)
                      ++|...+.||.|+            +..||||++.....      ...+.|.+|++++++++||||++            
T Consensus         5 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~   84 (283)
T 3bhy_A            5 DHYEMGEELGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILREIRHPNIITLHDIFENKTDVV   84 (283)
T ss_dssp             HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEE
T ss_pred             hhhhhHHhhcccCceEEEEEEEcCCCCeeehHHhhhccccccccchHHHHHHHHHHHHHhCCCCCeeehhheecCCCeEE
Confidence            4677778888875            66799999864321      12468999999999999999998            


Q ss_pred             ----------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCC----cEEEeecccccccCC
Q 045449          678 ----------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDM----VAHISDFGIAKLLSG  725 (823)
Q Consensus       678 ----------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~----~~kl~DfGla~~~~~  725 (823)
                                                  ++.|++.+|+|+|+.+|+||||||+||+++.++    .+||+|||+++....
T Consensus        85 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~~~~~kl~dfg~~~~~~~  164 (283)
T 3bhy_A           85 LILELVSGGELFDFLAEKESLTEDEATQFLKQILDGVHYLHSKRIAHFDLKPENIMLLDKNVPNPRIKLIDFGIAHKIEA  164 (283)
T ss_dssp             EEEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEESCSSSSSCCEEECCCTTCEECC-
T ss_pred             EEEeecCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCccCCCCChHHEEEecCCCCCCceEEEecccceeccC
Confidence                                        367889999999999999999999999998876    899999999987643


Q ss_pred             CCccccccccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCCc
Q 045449          726 EDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGETC  779 (823)
Q Consensus       726 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~~  779 (823)
                      ...   .....||+.|+|||++.+..++.++||||+||+++++++|..||....
T Consensus       165 ~~~---~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~  215 (283)
T 3bhy_A          165 GNE---FKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGET  215 (283)
T ss_dssp             ----------CCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCSS
T ss_pred             CCc---ccccCCCcCccCcceecCCCCCcchhhhhHHHHHHHHHHCCCCCCCcc
Confidence            322   234569999999999998899999999999999999999999987643

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*

Probab=99.85  E-value=1.6e-22  Score=227.17  Aligned_cols=146  Identities=26%  Similarity=0.367  Sum_probs=113.0

Q ss_pred             CCccceeeccC-----------CeEEEEEEehHhhHHHHHHHHHHHHHHhhc-chhhHHH--------------------
Q 045449          630 FSENNLIGIGN-----------GMEVAVKVFHQQYERALKSFEDECEVRKRI-RHRNLVK--------------------  677 (823)
Q Consensus       630 f~~~~~lg~g~-----------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~--------------------  677 (823)
                      |...+.||.|+           |+.||||++.....   +.+.+|++++.++ +|||||+                    
T Consensus        17 ~~~~~~LG~G~~g~V~~~~~~~g~~vAvK~~~~~~~---~~~~~E~~~l~~l~~HpnIv~~~~~~~~~~~~~lv~E~~~g   93 (434)
T 2rio_A           17 VVSEKILGYGSSGTVVFQGSFQGRPVAVKRMLIDFC---DIALMEIKLLTESDDHPNVIRYYCSETTDRFLYIALELCNL   93 (434)
T ss_dssp             EEEEEEEEECSTTCEEEEEESSSSEEEEEEEEGGGH---HHHHHHHHHHHHHTTSTTBCCEEEEEECSSEEEEEECCCSE
T ss_pred             eeccCeEeeCCCeEEEEEEEECCeEEEEEEEcHHHH---HHHHHHHHHHHhccCCCCcCeEEEEEecCCeEEEEEecCCC
Confidence            34456677775           66799999876532   4678999999887 8999998                    


Q ss_pred             --------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCC-------------CcEEEeecc
Q 045449          678 --------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDED-------------MVAHISDFG  718 (823)
Q Consensus       678 --------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~-------------~~~kl~DfG  718 (823)
                                                ++.|++.+|+|+|+.+|+||||||+|||++.+             +.+||+|||
T Consensus        94 sL~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDLkp~NILl~~~~~~~~~~~~~~~~~~~kL~DFG  173 (434)
T 2rio_A           94 NLQDLVESKNVSDENLKLQKEYNPISLLRQIASGVAHLHSLKIIHRDLKPQNILVSTSSRFTADQQTGAENLRILISDFG  173 (434)
T ss_dssp             EHHHHHHTC------------CCHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEECCHHHHSCCTTCCCSCEEEECCCT
T ss_pred             CHHHHHhccCCCchhhhhccchhHHHHHHHHHHHHHHHHHCCccccCCChHhEEEecCcccccccccCCCceEEEEcccc
Confidence                                      25688899999999999999999999999654             489999999


Q ss_pred             cccccCCCCcc--ccccccccCCCcCcccccCC-------CccccccceehhhhhhccccC-CCCCcCCC
Q 045449          719 IAKLLSGEDQL--SKQTQTLATIGYMAPEYGTK-------GRVSTRGDVCSFGIISGGKET-RSMTVGET  778 (823)
Q Consensus       719 la~~~~~~~~~--~~~~~~~gt~~y~aPE~~~~-------~~~~~~~Dv~S~Gvv~~~~~~-~~~~~~~~  778 (823)
                      +|+........  ......+||+.|+|||++.+       ..++.++||||+||+++++++ |..||.+.
T Consensus       174 ~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~DiwSlG~il~ellt~g~~Pf~~~  243 (434)
T 2rio_A          174 LCKKLDSGQSSFRTNLNNPSGTSGWRAPELLEESNNLQTKRRLTRSIDIFSMGCVFYYILSKGKHPFGDK  243 (434)
T ss_dssp             TCEECCC--------------CCTTSCHHHHSCCCTTSCCCCCCTHHHHHHHHHHHHHHHTTSCCTTCST
T ss_pred             cceecCCCCccceeeecCCCCCCCccCHHHhccccccccccCcchhhhhHhHHHHHHHHHhCCCCCCCCc
Confidence            99986543221  11234579999999999865       568999999999999999998 89998654

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A

Probab=99.85  E-value=4e-23  Score=222.01  Aligned_cols=151  Identities=25%  Similarity=0.303  Sum_probs=116.0

Q ss_pred             ccCCc-cceeeccC------------CeEEEEEEehHhhHHHHHHHHHHHHHHhhc-chhhHHH----------------
Q 045449          628 DRFSE-NNLIGIGN------------GMEVAVKVFHQQYERALKSFEDECEVRKRI-RHRNLVK----------------  677 (823)
Q Consensus       628 ~~f~~-~~~lg~g~------------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~----------------  677 (823)
                      ++|.. .+.||+|+            +..||||++........+.+.+|++++.++ +||||++                
T Consensus        12 ~~y~i~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~h~~i~~~~~~~~~~~~~~lv~e   91 (316)
T 2ac3_A           12 DVYQLQEDVLGEGAHARVQTCINLITSQEYAVKIIEKQPGHIRSRVFREVEMLYQCQGHRNVLELIEFFEEEDRFYLVFE   91 (316)
T ss_dssp             TSCEECCCCCCCCSSEEEEEEECSSSCCEEEEEEEECCSSCCHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             eeEEecCceecCCceEEEEEEEEcCCCcEEEEEEEeeCcchhHHHHHHHHHHHHHhcCCCCeeeEEEEEeeCCEEEEEEE
Confidence            34544 35677765            567999999755444456889999999985 7999998                


Q ss_pred             ------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCc---EEEeecccccccCCCCc--
Q 045449          678 ------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMV---AHISDFGIAKLLSGEDQ--  728 (823)
Q Consensus       678 ------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~---~kl~DfGla~~~~~~~~--  728 (823)
                                              ++.|++.+|+|+|+.+|+||||||+||+++.++.   +||+|||+++.......  
T Consensus        92 ~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~dlkp~Nil~~~~~~~~~~kl~Dfg~~~~~~~~~~~~  171 (316)
T 2ac3_A           92 KMRGGSILSHIHKRRHFNELEASVVVQDVASALDFLHNKGIAHRDLKPENILCEHPNQVSPVKICDFDLGSGIKLNGDCS  171 (316)
T ss_dssp             CCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEESCSSSSCSEEECCTTCCC---------
T ss_pred             cCCCCcHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhCCceeCCCCHHHEEEccCCCcCceEEEEccCccccccCCccc
Confidence                                    3678999999999999999999999999987765   99999999986542211  


Q ss_pred             ---cccccccccCCCcCcccccCC-----CccccccceehhhhhhccccCCCCCcCCC
Q 045449          729 ---LSKQTQTLATIGYMAPEYGTK-----GRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       729 ---~~~~~~~~gt~~y~aPE~~~~-----~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                         .......+||+.|+|||++.+     ..++.++||||+||++|++++|..||.+.
T Consensus       172 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~  229 (316)
T 2ac3_A          172 PISTPELLTPCGSAEYMAPEVVEAFSEEASIYDKRCDLWSLGVILYILLSGYPPFVGR  229 (316)
T ss_dssp             ----------CCSGGGCCHHHHHHTSHHHHHHTTTHHHHHHHHHHHHHHHSSCSCCCC
T ss_pred             cccccccccccCCcCccChHHhhcccccccCCCcccccHhHHHHHHHHHHCCCCCccc
Confidence               111224569999999999865     56899999999999999999999999764

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*

Probab=99.85  E-value=5.1e-23  Score=222.47  Aligned_cols=151  Identities=23%  Similarity=0.292  Sum_probs=119.3

Q ss_pred             ccCCccceeeccC-----------------CeEEEEEEehHh-hHHHHHHHHHHHHHHhhcchhhHHH------------
Q 045449          628 DRFSENNLIGIGN-----------------GMEVAVKVFHQQ-YERALKSFEDECEVRKRIRHRNLVK------------  677 (823)
Q Consensus       628 ~~f~~~~~lg~g~-----------------~~~vavK~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~------------  677 (823)
                      ++|...+.||.|+                 +..||||++... ......+|.+|+.++++++||||++            
T Consensus        30 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~  109 (327)
T 2yfx_A           30 KNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQSLPRF  109 (327)
T ss_dssp             GGCEEEEECC--CSSCEEEEEC--------CCEEEEEECCSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCE
T ss_pred             hheEEEEEEcCCCCeeEEEEEEcCCCCCCccceEEEEEeccccchhhHHHHHHHHHHHhhCCCCCCCeEEEEEcCCCCcE
Confidence            4566666677664                 346999998643 2445578999999999999999998            


Q ss_pred             -----------------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCC---CCcEEEeeccc
Q 045449          678 -----------------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDE---DMVAHISDFGI  719 (823)
Q Consensus       678 -----------------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~---~~~~kl~DfGl  719 (823)
                                                         ++.|++++|+|+|+.+|+||||||+||+++.   +..+||+|||+
T Consensus       110 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH~~~i~H~dlkp~NIli~~~~~~~~~kl~Dfg~  189 (327)
T 2yfx_A          110 ILMELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEENHFIHRDIAARNCLLTCPGPGRVAKIGDFGM  189 (327)
T ss_dssp             EEEECCTTEEHHHHHHHTSCCSSSTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEESCSSTTCCEEECCCHH
T ss_pred             EEEecCCCCcHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHHHhhCCeecCcCCHhHEEEecCCCcceEEECcccc
Confidence                                               3468889999999999999999999999984   45699999999


Q ss_pred             ccccCCCCccccccccccCCCcCcccccCCCccccccceehhhhhhccccC-CCCCcCCC
Q 045449          720 AKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKET-RSMTVGET  778 (823)
Q Consensus       720 a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~-~~~~~~~~  778 (823)
                      ++...............||+.|+|||++.+..++.++|||||||+++++++ |..||...
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~  249 (327)
T 2yfx_A          190 ARDIYRASYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSK  249 (327)
T ss_dssp             HHHHHC------CCGGGSCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTC
T ss_pred             ccccccccccccCCCcCCCcceeCHhHhcCCCCCchhhHHHHHHHHHHHHcCCCCCCCCc
Confidence            986544333223344568999999999988899999999999999999998 88888764

>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7

Probab=99.85  E-value=1.3e-23  Score=229.82  Aligned_cols=149  Identities=24%  Similarity=0.316  Sum_probs=120.4

Q ss_pred             ccCCccceeeccC---------------CeEEEEEEehHhh----HHHHHHHHHHHHHHhhc-chhhHHH----------
Q 045449          628 DRFSENNLIGIGN---------------GMEVAVKVFHQQY----ERALKSFEDECEVRKRI-RHRNLVK----------  677 (823)
Q Consensus       628 ~~f~~~~~lg~g~---------------~~~vavK~~~~~~----~~~~~~~~~E~~~l~~l-~h~niv~----------  677 (823)
                      ++|...+.||.|+               +..||||+++...    ....+.+.+|++++.++ +||||++          
T Consensus        54 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~  133 (355)
T 1vzo_A           54 ENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTETK  133 (355)
T ss_dssp             GGEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEEEETTE
T ss_pred             cceEEEEEeccCCCEEEEEEEEcccCCCCeEEEEEEEeHHHhhhhhhHHHHHHHHHHHHHHccCCCceeEEEEEEeeCce
Confidence            5677778888775               4669999986432    12335678899999999 6999998          


Q ss_pred             ------------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCC
Q 045449          678 ------------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGED  727 (823)
Q Consensus       678 ------------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~  727 (823)
                                                    ++.|++.+|+|+|+.+|+||||||+|||++.++.+||+|||+++......
T Consensus       134 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~kl~DfG~a~~~~~~~  213 (355)
T 1vzo_A          134 LHLILDYINGGELFTHLSQRERFTEHEVQIYVGEIVLALEHLHKLGIIYRDIKLENILLDSNGHVVLTDFGLSKEFVADE  213 (355)
T ss_dssp             EEEEECCCCSCBHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTSCEEESCSSEEEECCGGG
T ss_pred             EEEEeecCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCcEEEeeCCCCeecccCC
Confidence                                          35689999999999999999999999999999999999999998754322


Q ss_pred             ccccccccccCCCcCcccccCC--CccccccceehhhhhhccccCCCCCcCC
Q 045449          728 QLSKQTQTLATIGYMAPEYGTK--GRVSTRGDVCSFGIISGGKETRSMTVGE  777 (823)
Q Consensus       728 ~~~~~~~~~gt~~y~aPE~~~~--~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~  777 (823)
                      . ......+||+.|+|||++.+  ..++.++|||||||++|++++|..||..
T Consensus       214 ~-~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DvwslG~il~ell~g~~pf~~  264 (355)
T 1vzo_A          214 T-ERAYDFCGTIEYMAPDIVRGGDSGHDKAVDWWSLGVLMYELLTGASPFTV  264 (355)
T ss_dssp             G-GGGCGGGSCCTTCCHHHHTTCC---CTHHHHHHHHHHHHHHHHSSCTTSC
T ss_pred             C-CcccCcccCcCccChhhhcCCCCCCCchhhHHHHHHHHHHHHHCCCCCcc
Confidence            2 22334679999999999875  3478999999999999999999999864

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.85  E-value=3.3e-21  Score=221.36  Aligned_cols=188  Identities=23%  Similarity=0.334  Sum_probs=110.0

Q ss_pred             CCcEEEccCCcccccCCcccccCCCCccEEEeeccccccccCccccCCCCCCeEEeecccccccCCCccCCCcccCcccc
Q 045449          229 ALKEISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSITNSSKLSDLELGENLFSGFIPNTIGNLRNLEFGNI  308 (823)
Q Consensus       229 ~L~~L~Ls~N~l~g~lp~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  308 (823)
                      +|+.|+|++|.|++ +|..++   ++|++|+|++|+|+ .+|   ..+++|++|+|++|+|++ +|. +..  +|++|+|
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l~---~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~L  127 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNLP---PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDV  127 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCCC---TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEEC
T ss_pred             CccEEEeCCCCCCc-cCHhHc---CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEEC
Confidence            78888888888874 776653   67888888888887 566   346777888888887776 455 444  6666666


Q ss_pred             cCccccCCCCcccccccccCCCCceEEEeecCCCCccCCccccccccccceEEecCCcceeccCccccCcccccEEEccc
Q 045449          309 ADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGILPKSIGNFSLSLETILMANCSISGNIPQVVGNLSNLLVLELGG  388 (823)
Q Consensus       309 ~~N~l~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~  388 (823)
                      ++|++++++      .   .+++|+.|+|++|.|++ +|.                            .+++|++|+|++
T Consensus       128 s~N~l~~lp------~---~l~~L~~L~Ls~N~l~~-lp~----------------------------~l~~L~~L~Ls~  169 (571)
T 3cvr_A          128 DNNQLTMLP------E---LPALLEYINADNNQLTM-LPE----------------------------LPTSLEVLSVRN  169 (571)
T ss_dssp             CSSCCSCCC------C---CCTTCCEEECCSSCCSC-CCC----------------------------CCTTCCEEECCS
T ss_pred             CCCcCCCCC------C---cCccccEEeCCCCccCc-CCC----------------------------cCCCcCEEECCC
Confidence            666666531      1   34455555555555543 222                            234455555555


Q ss_pred             CcCCCCchhcccccCCCCEEEccCCCCCCcchHhhhcCCCC-------CEEEcccCcCcccccccccCCCCCCeEeccCC
Q 045449          389 NNLTGPIPVTFSQLQTLQAFDLTRNKLAGPITDELCHLARL-------HSLVLQGNKFSGSIPSCLGNLTSVRVLYLGLN  461 (823)
Q Consensus       389 N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L-------~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N  461 (823)
                      |+|++ +|. |.  ++|++|+|++|+|+ .+|. |..  +|       +.|+|++|+|+ .+|..+..+++|+.|+|++|
T Consensus       170 N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N  240 (571)
T 3cvr_A          170 NQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDN  240 (571)
T ss_dssp             SCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSS
T ss_pred             CCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCC
Confidence            55543 333 33  45555555555555 3333 322  34       66666666666 45555555666666666666


Q ss_pred             ccccccchhhhccC
Q 045449          462 IFTSVLSSTIWNLK  475 (823)
Q Consensus       462 ~l~~~~p~~~~~l~  475 (823)
                      .+++.+|..+..+.
T Consensus       241 ~l~~~~p~~l~~l~  254 (571)
T 3cvr_A          241 PLSSRIRESLSQQT  254 (571)
T ss_dssp             SCCHHHHHHHHHHH
T ss_pred             cCCCcCHHHHHHhh
Confidence            66666666655543

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}

Probab=99.85  E-value=1.5e-22  Score=219.60  Aligned_cols=148  Identities=30%  Similarity=0.368  Sum_probs=115.5

Q ss_pred             hccCCccceeeccC----------CeEEEEEEehHhhHHHHHHHHHHHHH--HhhcchhhHHH-----------------
Q 045449          627 TDRFSENNLIGIGN----------GMEVAVKVFHQQYERALKSFEDECEV--RKRIRHRNLVK-----------------  677 (823)
Q Consensus       627 t~~f~~~~~lg~g~----------~~~vavK~~~~~~~~~~~~~~~E~~~--l~~l~h~niv~-----------------  677 (823)
                      .++|...+.||.|+          +..||||++.....   +.+..|.++  +..++||||++                 
T Consensus        12 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~vavK~~~~~~~---~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~~   88 (336)
T 3g2f_A           12 LDNLKLLELIGRGRYGAVYKGSLDERPVAVKVFSFANR---QNFINEKNIYRVPLMEHDNIARFIVGDERVTADGRMEYL   88 (336)
T ss_dssp             TTSEEEEEEEEECSSEEEEEEEETTEEEEEEEEEGGGH---HHHHHHHHHHTSTTCCCTTBCCEEEEEEEECTTSCEEEE
T ss_pred             hHHhheeeecccCCCeEEEEEEECCeEEEEEEeeccch---hhHHHHHHHHHHHhccCcchhhheecccccccCCCceEE
Confidence            35777788888886          67799999975543   234444444  55689999987                 


Q ss_pred             ---------------------------HHHHHHHHhhhcCCC---------CEEeccCCCCCEEeCCCCcEEEeeccccc
Q 045449          678 ---------------------------IISSSLEYLHFGHSI---------PIIHCDLKPSNVLLDEDMVAHISDFGIAK  721 (823)
Q Consensus       678 ---------------------------~~~~~l~~L~~~h~~---------~ivHrdlk~~NiLl~~~~~~kl~DfGla~  721 (823)
                                                 ++.|++.+|.|+|+.         +|+||||||+|||++.++.+||+|||+|+
T Consensus        89 lv~e~~~~g~L~~~l~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~~~~~~~ivH~Dikp~Nill~~~~~~kL~DFG~a~  168 (336)
T 3g2f_A           89 LVMEYYPNGSLXKYLSLHTSDWVSSCRLAHSVTRGLAYLHTELPRGDHYKPAISHRDLNSRNVLVKNDGTCVISDFGLSM  168 (336)
T ss_dssp             EEECCCTTCBHHHHHHHCCBCHHHHHHHHHHHHHHHHHHHCCBCCGGGCBCCEECSSCSGGGEEECTTSCEEECCCTTCE
T ss_pred             EEEecCCCCcHHHHHhhcccchhHHHHHHHHHHHHHHHHHhhhccccccccceeecccccceEEEcCCCcEEEeecccee
Confidence                                       356888889999988         99999999999999999999999999998


Q ss_pred             ccCCCCc------cccccccccCCCcCcccccCC-------CccccccceehhhhhhccccCCCCCcCC
Q 045449          722 LLSGEDQ------LSKQTQTLATIGYMAPEYGTK-------GRVSTRGDVCSFGIISGGKETRSMTVGE  777 (823)
Q Consensus       722 ~~~~~~~------~~~~~~~~gt~~y~aPE~~~~-------~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~  777 (823)
                      .+.....      ........||+.|+|||++.+       ..++.++|||||||++|++++|..|+..
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~il~ell~g~~p~~~  237 (336)
T 3g2f_A          169 RLTGNRLVRPGEEDNAAISEVGTIRYMAPEVLEGAVNLRDXESALKQVDMYALGLIYWEIFMRCTDLFP  237 (336)
T ss_dssp             ECSSSSCC---------CCTTSCGGGCCHHHHTTCCCGGGHHHHHHHHHHHHHHHHHHHHHTTBGGGST
T ss_pred             ecccccccCccccccccccCCCccceeCchhhcCCcccccccccccccchHHHHHHHHHHHhcCCcCCC
Confidence            7643221      112234579999999999876       4678899999999999999999777643

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*

Probab=99.85  E-value=4.6e-23  Score=217.32  Aligned_cols=151  Identities=23%  Similarity=0.332  Sum_probs=123.6

Q ss_pred             hccCCccceeeccC------------CeEEEEEEehHhh--HHHHHHHHHHHHHHhhcchhhHHH---------------
Q 045449          627 TDRFSENNLIGIGN------------GMEVAVKVFHQQY--ERALKSFEDECEVRKRIRHRNLVK---------------  677 (823)
Q Consensus       627 t~~f~~~~~lg~g~------------~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~---------------  677 (823)
                      .++|...+.||.|+            ++.||+|++....  ....+.+.+|++++++++||||++               
T Consensus         5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~l   84 (279)
T 2w5a_A            5 AEDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRTNTTLYI   84 (279)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEEGGGTEEEE
T ss_pred             hhheeeehhccCCCCcEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhcCCCCCCeEEEEEecCCCceEEE
Confidence            35677778888875            5679999986432  445678999999999999999998               


Q ss_pred             -------------------------------HHHHHHHHhhhcCCCC-----EEeccCCCCCEEeCCCCcEEEeeccccc
Q 045449          678 -------------------------------IISSSLEYLHFGHSIP-----IIHCDLKPSNVLLDEDMVAHISDFGIAK  721 (823)
Q Consensus       678 -------------------------------~~~~~l~~L~~~h~~~-----ivHrdlk~~NiLl~~~~~~kl~DfGla~  721 (823)
                                                     ++.|++.+|+|+|+.+     |+||||||+||+++.++.+||+|||+++
T Consensus        85 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~ivH~dl~p~NIl~~~~~~~kl~dfg~~~  164 (279)
T 2w5a_A           85 VMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLAR  164 (279)
T ss_dssp             EEECCTTEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHC------CCCCCSGGGEEECSSSCEEECCCCHHH
T ss_pred             EEeCCCCCCHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHHhcccCCCCeeEEeccchhhEEEcCCCCEEEecCchhe
Confidence                                           3567888999999988     9999999999999999999999999998


Q ss_pred             ccCCCCccccccccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCCc
Q 045449          722 LLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGETC  779 (823)
Q Consensus       722 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~~  779 (823)
                      .......  ......||+.|+|||++.+..++.++||||+||+++++++|..||....
T Consensus       165 ~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~  220 (279)
T 2w5a_A          165 ILNHDTS--FAKTFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALMPPFTAFS  220 (279)
T ss_dssp             HC---CH--HHHHHHSCCTTCCHHHHHCC-CCHHHHHHHHHHHHHHHHHSSCSSCCSS
T ss_pred             eeccccc--cccccCCCccccChHHhccCCCCchhhHHHHHHHHHHHHHCCCCCcccC
Confidence            7643321  1234578999999999988889999999999999999999999987653

>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}

Probab=99.85  E-value=3.1e-23  Score=225.89  Aligned_cols=150  Identities=19%  Similarity=0.183  Sum_probs=117.3

Q ss_pred             ccCCccceeeccC---------------CeEEEEEEehHhhH-----------HHHHHHHHHHHHHhhcchhhHHH----
Q 045449          628 DRFSENNLIGIGN---------------GMEVAVKVFHQQYE-----------RALKSFEDECEVRKRIRHRNLVK----  677 (823)
Q Consensus       628 ~~f~~~~~lg~g~---------------~~~vavK~~~~~~~-----------~~~~~~~~E~~~l~~l~h~niv~----  677 (823)
                      ++|...+.||.|+               +..||||+......           ...+.+.+|+..+..++||||++    
T Consensus        37 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~ni~~~~~~  116 (345)
T 2v62_A           37 NQWVLGKKIGSGGFGLIYLAFPTNKPEKDARHVVKVEYQENGPLFSELKFYQRVAKKDCIKKWIERKQLDYLGIPLFYGS  116 (345)
T ss_dssp             CEEEEEEEC------CEEEEEESSSCGGGCCEEEEEEECC-CHHHHHHHHHHHHCCHHHHHHHHHHHTCSCCCCCCEEEE
T ss_pred             ceEEEEeeEeecCCeEEEEEEecCCCCccceEEEEeeecCCcchHHHHHHHHHHhhhHHHHHHHhhccccccCcceeecc
Confidence            4566667777664               35589998864321           11235778999999999999876    


Q ss_pred             ---------------------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCC--cEEEee
Q 045449          678 ---------------------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDM--VAHISD  716 (823)
Q Consensus       678 ---------------------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~--~~kl~D  716 (823)
                                                             ++.|++.+|+|+|+.+|+||||||+||+++.++  .+||+|
T Consensus       117 ~~~~~~~~~~~~lv~e~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~~~kL~D  196 (345)
T 2v62_A          117 GLTEFKGRSYRFMVMERLGIDLQKISGQNGTFKKSTVLQLGIRMLDVLEYIHENEYVHGDIKAANLLLGYKNPDQVYLAD  196 (345)
T ss_dssp             EEEESSSCEEEEEEEECEEEEHHHHCBGGGBCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEESSSTTSEEECC
T ss_pred             cccccCCCcEEEEEEeccCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCcCHHHEEEccCCCCcEEEEe
Confidence                                                   467899999999999999999999999998777  999999


Q ss_pred             cccccccCCCCcc-----ccccccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCC
Q 045449          717 FGIAKLLSGEDQL-----SKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGE  777 (823)
Q Consensus       717 fGla~~~~~~~~~-----~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~  777 (823)
                      ||+|+.+......     .......||+.|+|||++.+..++.++|||||||++|++++|..||.+
T Consensus       197 fg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~pf~~  262 (345)
T 2v62_A          197 YGLSYRYCPNGNHKQYQENPRKGHNGTIEFTSLDAHKGVALSRRSDVEILGYCMLRWLCGKLPWEQ  262 (345)
T ss_dssp             CTTCEESSGGGCCCCCCCCGGGCSCSCTTTCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCTTGG
T ss_pred             CCCceecccccccccchhccccccCCCccccCHHHhcCCCCCchhhHHHHHHHHHHHHhCCCCccc
Confidence            9999876432211     112345799999999999988999999999999999999999999954

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*

Probab=99.85  E-value=9.8e-23  Score=215.59  Aligned_cols=146  Identities=19%  Similarity=0.262  Sum_probs=120.0

Q ss_pred             HhccCCccceeeccC------------CeEEEEEEehHh--hHHHHHHHHHHHHHHhhc-chhhHHH-------------
Q 045449          626 ATDRFSENNLIGIGN------------GMEVAVKVFHQQ--YERALKSFEDECEVRKRI-RHRNLVK-------------  677 (823)
Q Consensus       626 at~~f~~~~~lg~g~------------~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l-~h~niv~-------------  677 (823)
                      .+++|...+.||.|+            +..||||++...  ......++.+|+..+.++ +||||++             
T Consensus         9 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~~~~l~~h~~iv~~~~~~~~~~~~~l   88 (289)
T 1x8b_A            9 YTTEFHELEKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAGSVDEQNALREVYAHAVLGQHSHVVRYFSAWAEDDHMLI   88 (289)
T ss_dssp             HHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCCTTSHHHHHHHHHHHHHHHSCSCTTBCCEEEEEEETTEEEE
T ss_pred             ccchhhhhhhhcCCCceEEEEEEEcCCCceEEEEEecccccccHHHHHHHHHHHHHHHhCCCCCeeeeeeeeecCCeEEE
Confidence            356788888999885            677999998743  233456788999999999 9999998             


Q ss_pred             -------------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCC------------------
Q 045449          678 -------------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDE------------------  708 (823)
Q Consensus       678 -------------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~------------------  708 (823)
                                                     ++.|++.+|+|+|+.+|+||||||+||+++.                  
T Consensus        89 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~~ivH~Dikp~NIl~~~~~~~~~~~~~~~~~~~~~  168 (289)
T 1x8b_A           89 QNEYCNGGSLADAISENYRIMSYFKEAELKDLLLQVGRGLRYIHSMSLVHMDIKPSNIFISRTSIPNAASEEGDEDDWAS  168 (289)
T ss_dssp             EEECCTTCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEC-------------------
T ss_pred             EEEecCCCcHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHHhCCEeecCCCHHHEEEcCCCCCcccccccccccccC
Confidence                                           3578899999999999999999999999984                  


Q ss_pred             -CCcEEEeecccccccCCCCccccccccccCCCcCcccccCCC-ccccccceehhhhhhccccCCCCCcCC
Q 045449          709 -DMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKG-RVSTRGDVCSFGIISGGKETRSMTVGE  777 (823)
Q Consensus       709 -~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~S~Gvv~~~~~~~~~~~~~  777 (823)
                       ...+||+|||.++......      ...||+.|+|||++.+. .++.++||||+||+++++.++..++..
T Consensus       169 ~~~~~kl~Dfg~~~~~~~~~------~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~  233 (289)
T 1x8b_A          169 NKVMFKIGDLGHVTRISSPQ------VEEGDSRFLANEVLQENYTHLPKADIFALALTVVCAAGAEPLPRN  233 (289)
T ss_dssp             -CCCEEECCCTTCEETTCSC------CCCCCGGGCCHHHHTTCCTTHHHHHHHHHHHHHHHHTTCCCCCSS
T ss_pred             CceEEEEcccccccccCCcc------ccCCCccccChhHhcCCCCCCchhhHHHHHHHHHHHhcCCCCCcc
Confidence             4479999999998764322      24599999999998766 567899999999999999999876644

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*

Probab=99.85  E-value=1.2e-22  Score=217.81  Aligned_cols=150  Identities=23%  Similarity=0.331  Sum_probs=115.3

Q ss_pred             hccCCccceeeccC------------CeEEEEEEehHh---hHHHHHHHHHHHHHHhhcchhhHHH--------------
Q 045449          627 TDRFSENNLIGIGN------------GMEVAVKVFHQQ---YERALKSFEDECEVRKRIRHRNLVK--------------  677 (823)
Q Consensus       627 t~~f~~~~~lg~g~------------~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~--------------  677 (823)
                      .++|...+.||.|+            |..||||++...   .....+++.+|++++++++||||++              
T Consensus        31 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv  110 (310)
T 2wqm_A           31 LANFRIEKKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKYYASFIEDNELNIV  110 (310)
T ss_dssp             GGGEEEEEEEECC--CEEEEEEETTTCCEEEEEEECTTSSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEE
T ss_pred             ccceEEEEeecCCCCceEEEEEEcCCCceEEEEeeehhhccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCcEEEE
Confidence            35677788888875            567999998642   2455678999999999999999998              


Q ss_pred             ------------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCC
Q 045449          678 ------------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGED  727 (823)
Q Consensus       678 ------------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~  727 (823)
                                                    ++.|++++|.|+|+.+++||||||+||+++.++.+||+|||+++......
T Consensus       111 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~i~H~dl~p~NIl~~~~~~~kl~Dfg~~~~~~~~~  190 (310)
T 2wqm_A          111 LELADAGDLSRMIKHFKKQKRLIPERTVWKYFVQLCSALEHMHSRRVMHRDIKPANVFITATGVVKLGDLGLGRFFSSKT  190 (310)
T ss_dssp             EECCCSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTSCEEECCC----------
T ss_pred             EecCCCCCHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHhhCCeeCCCCcHHHEEEcCCCCEEEEeccceeeecCCC
Confidence                                          35688899999999999999999999999999999999999998754322


Q ss_pred             ccccccccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCC
Q 045449          728 QLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       728 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      .  ......||+.|+|||++.+..++.++|||||||+++++++|..||.+.
T Consensus       191 ~--~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~  239 (310)
T 2wqm_A          191 T--AAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGD  239 (310)
T ss_dssp             ----------CCSSCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTC--
T ss_pred             c--cccccCCCeeEeChHHhCCCCCCchhhHHHHHHHHHHHHhCCCCCccc
Confidence            1  223457899999999999889999999999999999999999998654

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}

Probab=99.85  E-value=8.1e-23  Score=228.96  Aligned_cols=149  Identities=28%  Similarity=0.393  Sum_probs=115.1

Q ss_pred             hccCCccceeeccC-----------CeEEEEEEehHhhHHHHHHHHHHHHHHhhc-chhhHHH-----------------
Q 045449          627 TDRFSENNLIGIGN-----------GMEVAVKVFHQQYERALKSFEDECEVRKRI-RHRNLVK-----------------  677 (823)
Q Consensus       627 t~~f~~~~~lg~g~-----------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~-----------------  677 (823)
                      ..+|...+.||.|+           ++.||||++.....   ..+.+|+++++++ +|||||+                 
T Consensus        23 ~~~y~~~~~LG~G~~G~V~~~~~~~~~~vAvK~~~~~~~---~~~~~E~~~l~~l~~HpnIv~l~~~~~~~~~~~lv~E~   99 (432)
T 3p23_A           23 KISFCPKDVLGHGAEGTIVYRGMFDNRDVAVKRILPECF---SFADREVQLLRESDEHPNVIRYFCTEKDRQFQYIAIEL   99 (432)
T ss_dssp             TEEEEEEEEEEECGGGCEEEEEESSSSEEEEEEECTTTE---EECHHHHHHHHHSCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred             cEEEecCCeeecCcCEEEEEEEEeCCeEEEEEEECHHHH---HHHHHHHHHHHhccCCCCcCeEEEEEecCCEEEEEEEC
Confidence            34677778888875           56799999865421   3467899999999 8999998                 


Q ss_pred             -----------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCC-----CCcEEEeecccccccCCCCc-
Q 045449          678 -----------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDE-----DMVAHISDFGIAKLLSGEDQ-  728 (823)
Q Consensus       678 -----------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~-----~~~~kl~DfGla~~~~~~~~-  728 (823)
                                             ++.|++.+|+|+|+.+|+||||||+||+++.     ...+||+|||+|+....... 
T Consensus       100 ~~g~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlKp~NIll~~~~~~~~~~~kL~DFG~a~~~~~~~~~  179 (432)
T 3p23_A          100 CAATLQEYVEQKDFAHLGLEPITLLQQTTSGLAHLHSLNIVHRDLKPHNILISMPNAHGKIKAMISDFGLCKKLAVGRHS  179 (432)
T ss_dssp             CSEEHHHHHHSSSCCCCSSCHHHHHHHHHHHHHHHHHTTCCCCCCSTTSEEECCCBTTTBCCEEECCTTEEECC------
T ss_pred             CCCCHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHCcCEeCCCCHHHEEEecCCCCCceeEEEecccceeeccCCCcc
Confidence                                   4678999999999999999999999999943     34688999999987653321 


Q ss_pred             cccccccccCCCcCcccccC---CCccccccceehhhhhhccccC-CCCCcCCC
Q 045449          729 LSKQTQTLATIGYMAPEYGT---KGRVSTRGDVCSFGIISGGKET-RSMTVGET  778 (823)
Q Consensus       729 ~~~~~~~~gt~~y~aPE~~~---~~~~~~~~Dv~S~Gvv~~~~~~-~~~~~~~~  778 (823)
                      .......+||+.|+|||++.   ...++.++||||+||+++++++ |..||...
T Consensus       180 ~~~~~~~~gt~~y~APE~l~~~~~~~~t~~~DiwSlG~il~ellt~g~~pf~~~  233 (432)
T 3p23_A          180 FSRRSGVPGTEGWIAPEMLSEDCKENPTYTVDIFSAGCVFYYVISEGSHPFGKS  233 (432)
T ss_dssp             ------CCSCTTSCCGGGTSCC---CCCTHHHHHHHHHHHHHHHTTSCBTTBST
T ss_pred             eeeccccCCCcCccChhhhhcccccCCCcHHHHHHHHHHHHHHHcCCCCCcchh
Confidence            12234567999999999987   4567889999999999999999 88888654

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}

Probab=99.85  E-value=1.5e-22  Score=217.68  Aligned_cols=151  Identities=21%  Similarity=0.223  Sum_probs=123.1

Q ss_pred             hccCCccceeeccC------------CeEEEEEEehHhhHHHHHHHHHHHHHHhhcchhhHHH-----------------
Q 045449          627 TDRFSENNLIGIGN------------GMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVK-----------------  677 (823)
Q Consensus       627 t~~f~~~~~lg~g~------------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~-----------------  677 (823)
                      .++|...+.||.|+            +..||||++........+.+.+|++++++++||||++                 
T Consensus        28 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~l  107 (317)
T 2buj_A           28 NKHYLFIQKLGEGGFSYVDLVEGLHDGHFYALKRILCHEQQDREEAQREADMHRLFNHPNILRLVAYCLRERGAKHEAWL  107 (317)
T ss_dssp             TEEEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEESSHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEEEETTEEEEEE
T ss_pred             CeEEEEEEEecCCCCeEEEEEEecCCCcEEEEEEEecCCHHHHHHHHHHHHHHhhcCCCCeeeEEEEEEeccCCCceeEE
Confidence            35777788888875            5679999987665666788999999999999999997                 


Q ss_pred             -------------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCC
Q 045449          678 -------------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGE  726 (823)
Q Consensus       678 -------------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~  726 (823)
                                                     ++.|++++|+|+|+.+|+||||||+||+++.++.+||+|||+++.....
T Consensus       108 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~ivH~dlkp~NIl~~~~~~~kl~dfg~~~~~~~~  187 (317)
T 2buj_A          108 LLPFFKRGTLWNEIERLKDKGNFLTEDQILWLLLGICRGLEAIHAKGYAHRDLKPTNILLGDEGQPVLMDLGSMNQACIH  187 (317)
T ss_dssp             EEECCTTCBHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTSCEEECCCSSCEESCEE
T ss_pred             EEEeCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEEcCCCCEEEEecCcchhcccc
Confidence                                           3568889999999999999999999999999999999999998765321


Q ss_pred             Ccc-------ccccccccCCCcCcccccCCCc---cccccceehhhhhhccccCCCCCcCC
Q 045449          727 DQL-------SKQTQTLATIGYMAPEYGTKGR---VSTRGDVCSFGIISGGKETRSMTVGE  777 (823)
Q Consensus       727 ~~~-------~~~~~~~gt~~y~aPE~~~~~~---~~~~~Dv~S~Gvv~~~~~~~~~~~~~  777 (823)
                      ...       .......||+.|+|||++.+..   ++.++|||||||+++++++|..||..
T Consensus       188 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~  248 (317)
T 2buj_A          188 VEGSRQALTLQDWAAQRCTISYRAPELFSVQSHCVIDERTDVWSLGCVLYAMMFGEGPYDM  248 (317)
T ss_dssp             EESHHHHHHHHHHHHHHSCGGGCCGGGSSCCSEEEECTHHHHHHHHHHHHHHHHSSCTTHH
T ss_pred             cccccccccccccccccCCcccCCHhHhccCCCcCCCchhhHHHHHHHHHHHHhCCCChhh
Confidence            110       0112345799999999987543   68999999999999999999999854

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}

Probab=99.85  E-value=7.2e-23  Score=221.15  Aligned_cols=151  Identities=29%  Similarity=0.389  Sum_probs=125.2

Q ss_pred             ccCCccceeeccC----------------CeEEEEEEehHhhHHHHHHHHHHHHHHhhcchhhHHH--------------
Q 045449          628 DRFSENNLIGIGN----------------GMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVK--------------  677 (823)
Q Consensus       628 ~~f~~~~~lg~g~----------------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~--------------  677 (823)
                      ++|...+.||.|+                +..||||++........+.|.+|++++++++||||++              
T Consensus        41 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~  120 (326)
T 2w1i_A           41 RHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLK  120 (326)
T ss_dssp             GGEEEEEEEECCSSEEEEEEEECTTSSSCCEEEEEEEESSCCSHHHHHHHHHHHHHHTCCCTTBCCEEEEECC----CCE
T ss_pred             HHceeeeeeccCCCeEEEEEEeccccCCCceEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEEecCCCceE
Confidence            3455566677664                5679999997666666688999999999999999997              


Q ss_pred             -----------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCc
Q 045449          678 -----------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQ  728 (823)
Q Consensus       678 -----------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~  728 (823)
                                                   ++.|++++|+++|+.+|+||||||+||+++.++.+||+|||+++.......
T Consensus       121 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~dikp~NIli~~~~~~kL~Dfg~~~~~~~~~~  200 (326)
T 2w1i_A          121 LIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGTKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKE  200 (326)
T ss_dssp             EEECCCTTCBHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEEEETTEEEECCCTTCEECCSSCS
T ss_pred             EEEECCCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhCCEeccCCCcceEEEcCCCcEEEecCcchhhcccccc
Confidence                                         356889999999999999999999999999999999999999987654332


Q ss_pred             c-ccccccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCC
Q 045449          729 L-SKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       729 ~-~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      . .......++..|+|||++.+..++.++||||+||+++++++|..|+...
T Consensus       201 ~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~tg~~~~~~~  251 (326)
T 2w1i_A          201 YYKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSP  251 (326)
T ss_dssp             EEECSSCCSCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHHTTCGGGSH
T ss_pred             ccccccCCCCceeEECchhhcCCCCCchhhHHHHHHHHHHHHhcCCCCCCC
Confidence            1 1123345788899999998888999999999999999999998887643

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*

Probab=99.85  E-value=1.2e-22  Score=218.88  Aligned_cols=149  Identities=28%  Similarity=0.356  Sum_probs=120.6

Q ss_pred             hccCCccceeeccC------------CeEEEEEEehHhh--------HHHHHHHHHHHHHHhhcchhhHHH---------
Q 045449          627 TDRFSENNLIGIGN------------GMEVAVKVFHQQY--------ERALKSFEDECEVRKRIRHRNLVK---------  677 (823)
Q Consensus       627 t~~f~~~~~lg~g~------------~~~vavK~~~~~~--------~~~~~~~~~E~~~l~~l~h~niv~---------  677 (823)
                      .++|...+.||.|+            +..||||++....        ......+.+|++++++++||||++         
T Consensus         9 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~   88 (322)
T 2ycf_A            9 RDEYIMSKTLGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFDAED   88 (322)
T ss_dssp             HHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECC---------------CHHHHHHHHHHCCCTTBCCEEEEEESSS
T ss_pred             hhceeEeeEEecCCCEEEEEEEEcCCCcEEEEEEeehhhhhhcccccchhhhhHHHHHHHHHhCCCCCCceEeeEEcCCc
Confidence            46788888999886            5679999986432        122346889999999999999998         


Q ss_pred             ------------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCC---cEEEeecccccccC
Q 045449          678 ------------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDM---VAHISDFGIAKLLS  724 (823)
Q Consensus       678 ------------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~---~~kl~DfGla~~~~  724 (823)
                                                    ++.|++.+|+|+|+.+|+||||||+||+++.++   .+||+|||+++...
T Consensus        89 ~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~NIl~~~~~~~~~~kl~Dfg~~~~~~  168 (322)
T 2ycf_A           89 YYIVLELMEGGELFDKVVGNKRLKEATCKLYFYQMLLAVQYLHENGIIHRDLKPENVLLSSQEEDCLIKITDFGHSKILG  168 (322)
T ss_dssp             EEEEEECCTTEETHHHHSTTCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEESSSSSSCCEEECCCTTCEECC
T ss_pred             eEEEEecCCCCcHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHEEEecCCCCCeEEEccCccceecc
Confidence                                          367899999999999999999999999998655   49999999998764


Q ss_pred             CCCccccccccccCCCcCcccccC---CCccccccceehhhhhhccccCCCCCcCCC
Q 045449          725 GEDQLSKQTQTLATIGYMAPEYGT---KGRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       725 ~~~~~~~~~~~~gt~~y~aPE~~~---~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      ...   ......||+.|+|||++.   ...++.++||||+||++|++++|..||...
T Consensus       169 ~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~  222 (322)
T 2ycf_A          169 ETS---LMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEH  222 (322)
T ss_dssp             CCH---HHHHHHSCCTTCCHHHHHHTTTTTCTTHHHHHHHHHHHHHHHHSSCSSCST
T ss_pred             ccc---ccccccCCcCccCchhhccCCCCCCCchhhHHHHHHHHHHHHhCCCCCccc
Confidence            322   123457999999999863   567899999999999999999999999654

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...

Probab=99.85  E-value=1e-22  Score=223.12  Aligned_cols=147  Identities=23%  Similarity=0.331  Sum_probs=123.9

Q ss_pred             ccCCccceeeccC------------CeEEEEEEehHh-hHHHHHHHHHHHHHHhhcchhhHHH-----------------
Q 045449          628 DRFSENNLIGIGN------------GMEVAVKVFHQQ-YERALKSFEDECEVRKRIRHRNLVK-----------------  677 (823)
Q Consensus       628 ~~f~~~~~lg~g~------------~~~vavK~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~-----------------  677 (823)
                      ++|...+.||.|+            +..||+|++... .....+.+.+|++++++++||||++                 
T Consensus        33 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~  112 (360)
T 3eqc_A           33 DDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICMEH  112 (360)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEECCCCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEETTEEEEEECC
T ss_pred             ccceeeeeecCCCCeEEEEEEECCCCcEEEEEEeccccCHHHHHHHHHHHHHHHHCCCCCEEEEeEEEEECCEEEEEEEC
Confidence            5678888899886            567999998754 2445578999999999999999998                 


Q ss_pred             -----------------------HHHHHHHHhhhcCCC-CEEeccCCCCCEEeCCCCcEEEeecccccccCCCCcccccc
Q 045449          678 -----------------------IISSSLEYLHFGHSI-PIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQT  733 (823)
Q Consensus       678 -----------------------~~~~~l~~L~~~h~~-~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~  733 (823)
                                             ++.+++.+|+|+|+. +|+||||||+||+++.++.+||+|||+++.....    ...
T Consensus       113 ~~~~~L~~~l~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~----~~~  188 (360)
T 3eqc_A          113 MDGGSLDQVLKKAGRIPEQILGKVSIAVIKGLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDS----MAN  188 (360)
T ss_dssp             CTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHCCCCSCCSGGGEEECTTCCEEECCCCCCHHHHHH----C--
T ss_pred             CCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhCCEEcCCccHHHEEECCCCCEEEEECCCCcccccc----ccc
Confidence                                   356788889999985 9999999999999999999999999999765321    123


Q ss_pred             ccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCC
Q 045449          734 QTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       734 ~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      ...||+.|+|||++.+..++.++||||+||+++++++|..||...
T Consensus       189 ~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~  233 (360)
T 3eqc_A          189 SFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIPPP  233 (360)
T ss_dssp             --CCCCTTCCHHHHTTCCCSHHHHHHHHHHHHHHHHHTSCCSSCC
T ss_pred             CCCCCCCeECHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Confidence            457999999999999999999999999999999999999999764

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*

Probab=99.84  E-value=3e-22  Score=217.69  Aligned_cols=149  Identities=28%  Similarity=0.370  Sum_probs=120.5

Q ss_pred             HHHHHHHhccCCccceeeccC----------CeEEEEEEehHhhHHHHHHHHHHHHHHhh--cchhhHHH----------
Q 045449          620 YHELLRATDRFSENNLIGIGN----------GMEVAVKVFHQQYERALKSFEDECEVRKR--IRHRNLVK----------  677 (823)
Q Consensus       620 ~~~l~~at~~f~~~~~lg~g~----------~~~vavK~~~~~~~~~~~~~~~E~~~l~~--l~h~niv~----------  677 (823)
                      ...-....++|...+.||.|+          ++.||||++.....   +.+.+|++++..  ++||||++          
T Consensus        34 ~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~vavK~~~~~~~---~~~~~e~~~~~~~~l~h~ni~~~~~~~~~~~~  110 (342)
T 1b6c_B           34 LLVQRTIARTIVLQESIGKGRFGEVWRGKWRGEEVAVKIFSSREE---RSWFREAEIYQTVMLRHENILGFIAADNKDNG  110 (342)
T ss_dssp             HHHHHHHHHHCEEEEEEEEETTEEEEEEEETTEEEEEEEECGGGH---HHHHHHHHHHHHSCCCCTTBCCEEEEEECCCS
T ss_pred             eeecccccccEEEEeeecCCCCcEEEEEEEcCccEEEEEeCchhH---HHHHHHHHHHHHhhcCCCcEEEEEeeecccCC
Confidence            333344567899999999986          67799999975533   567888888887  79999997          


Q ss_pred             ---------------------------------HHHHHHHHhhhcC--------CCCEEeccCCCCCEEeCCCCcEEEee
Q 045449          678 ---------------------------------IISSSLEYLHFGH--------SIPIIHCDLKPSNVLLDEDMVAHISD  716 (823)
Q Consensus       678 ---------------------------------~~~~~l~~L~~~h--------~~~ivHrdlk~~NiLl~~~~~~kl~D  716 (823)
                                                       ++.|++.+|+|+|        +.+|+||||||+||+++.++.+||+|
T Consensus       111 ~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dlkp~NIll~~~~~~kL~D  190 (342)
T 1b6c_B          111 TWTQLWLVSDYHEHGSLFDYLNRYTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIAD  190 (342)
T ss_dssp             SCCCEEEEECCCTTCBHHHHHHHCCBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCEEECSCCSGGGEEECTTSCEEECC
T ss_pred             ccceeEEEEeecCCCcHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHhhhcccCCeeeCCCCHHHEEECCCCCEEEEE
Confidence                                             3567888888888        89999999999999999999999999


Q ss_pred             cccccccCCCCccc--cccccccCCCcCcccccCCC------ccccccceehhhhhhccccCC
Q 045449          717 FGIAKLLSGEDQLS--KQTQTLATIGYMAPEYGTKG------RVSTRGDVCSFGIISGGKETR  771 (823)
Q Consensus       717 fGla~~~~~~~~~~--~~~~~~gt~~y~aPE~~~~~------~~~~~~Dv~S~Gvv~~~~~~~  771 (823)
                      ||+++.........  ......||+.|+|||++.+.      .++.++|||||||++|++++|
T Consensus       191 fg~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~el~tg  253 (342)
T 1b6c_B          191 LGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARR  253 (342)
T ss_dssp             CTTCEEEETTTTEEEECCCSCCCCGGGCCHHHHTSCCCTTCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             CCCceeccccccccccccccCCcCcccCCHhhhcccccccccccCCcccHHHHHHHHHHHHhc
Confidence            99998765433211  22345799999999998765      345789999999999999999

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A*

Probab=99.84  E-value=1.5e-22  Score=213.00  Aligned_cols=148  Identities=27%  Similarity=0.445  Sum_probs=116.9

Q ss_pred             ccCCccceeeccC------------CeEEEEEEehHhhH---HHHHHHHHHHHHHhhcchhhHHH---------------
Q 045449          628 DRFSENNLIGIGN------------GMEVAVKVFHQQYE---RALKSFEDECEVRKRIRHRNLVK---------------  677 (823)
Q Consensus       628 ~~f~~~~~lg~g~------------~~~vavK~~~~~~~---~~~~~~~~E~~~l~~l~h~niv~---------------  677 (823)
                      ++|...+.||.|+            ++.||||++.....   ...+.+.+|++++++++||||++               
T Consensus        11 ~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~   90 (276)
T 2h6d_A           11 GHYVLGDTLGVGTFGKVKIGEHQLTGHKVAVKILNRQKIRSLDVVGKIKREIQNLKLFRHPHIIKLYQVISTPTDFFMVM   90 (276)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             ccEEEEeeecCCCCeEEEEEEECCCCceEEEEEeccccccchhHHHHHHHHHHHHhcCCCCCEeEEEEEEecCCeEEEEE
Confidence            5677778888875            66799999975532   23467899999999999999998               


Q ss_pred             -------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccc
Q 045449          678 -------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQ  732 (823)
Q Consensus       678 -------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~  732 (823)
                                               ++.|++++|+|+|+.+|+||||||+||+++.++.+||+|||+++.......   .
T Consensus        91 e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~~l~dfg~~~~~~~~~~---~  167 (276)
T 2h6d_A           91 EYVSGGELFDYICKHGRVEEMEARRLFQQILSAVDYCHRHMVVHRDLKPENVLLDAHMNAKIADFGLSNMMSDGEF---L  167 (276)
T ss_dssp             ECCCSCBHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHHCSSCCCCCGGGEEECTTSCEEECCCCGGGCCCC-------
T ss_pred             eccCCCcHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCCccCCCChhhEEECCCCCEEEeecccccccCCCcc---e
Confidence                                     357889999999999999999999999999999999999999987643321   2


Q ss_pred             cccccCCCcCcccccCCCcc-ccccceehhhhhhccccCCCCCcCCC
Q 045449          733 TQTLATIGYMAPEYGTKGRV-STRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       733 ~~~~gt~~y~aPE~~~~~~~-~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      ....||+.|+|||++.+..+ +.++||||+|++++++++|..||.+.
T Consensus       168 ~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~  214 (276)
T 2h6d_A          168 RTSCGSPNYAAPEVISGRLYAGPEVDIWSCGVILYALLCGTLPFDDE  214 (276)
T ss_dssp             ---------CCTGGGTTSCCCHHHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             ecccCCccccCHHHHcCCCCCCccchHHHHHHHHHHHHhCCCCCCCC
Confidence            34578999999999887765 68999999999999999999998764

>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A

Probab=99.84  E-value=1.8e-22  Score=222.19  Aligned_cols=145  Identities=25%  Similarity=0.297  Sum_probs=119.8

Q ss_pred             ccCCccceeeccC------------CeEEEEEEehHhhHHHHHHHHHHHHHHhhcc-----------hhhHHH-------
Q 045449          628 DRFSENNLIGIGN------------GMEVAVKVFHQQYERALKSFEDECEVRKRIR-----------HRNLVK-------  677 (823)
Q Consensus       628 ~~f~~~~~lg~g~------------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-----------h~niv~-------  677 (823)
                      ++|...+.||.|+            ++.||||++.... ...+.+.+|++++.++.           |+||++       
T Consensus        19 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~i~~~~~~~~~   97 (373)
T 1q8y_A           19 ARYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGDK-VYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFNH   97 (373)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCH-HHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEEEEE
T ss_pred             CeEEEEEeeeecCCeEEEEEEecCCCcEEEEEEecCCc-cchhhhhHHHHHHHHhhcccccchhccccchHHHHHHHhhc
Confidence            5788888898886            6679999997543 34467889999999886           778876       


Q ss_pred             --------------------------------------HHHHHHHHhhhcCCC-CEEeccCCCCCEEeC------CCCcE
Q 045449          678 --------------------------------------IISSSLEYLHFGHSI-PIIHCDLKPSNVLLD------EDMVA  712 (823)
Q Consensus       678 --------------------------------------~~~~~l~~L~~~h~~-~ivHrdlk~~NiLl~------~~~~~  712 (823)
                                                            ++.|++.+|+|+|+. +|+||||||+|||++      ..+.+
T Consensus        98 ~~~~~~~~~lv~e~~~~~L~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH~~~~ivH~Dikp~NIll~~~~~~~~~~~~  177 (373)
T 1q8y_A           98 KGPNGVHVVMVFEVLGENLLALIKKYEHRGIPLIYVKQISKQLLLGLDYMHRRCGIIHTDIKPENVLMEIVDSPENLIQI  177 (373)
T ss_dssp             EETTEEEEEEEECCCCEEHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHTTCEECSCCSGGGEEEEEEETTTTEEEE
T ss_pred             cCCCCceEEEEEecCCCCHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHhcCCEEecCCChHHeEEeccCCCcCcceE
Confidence                                                  357889999999998 999999999999994      44589


Q ss_pred             EEeecccccccCCCCccccccccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCC
Q 045449          713 HISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       713 kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      ||+|||+++.....     .....||+.|+|||++.+..++.++||||+||++|++++|..||...
T Consensus       178 kl~Dfg~a~~~~~~-----~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~  238 (373)
T 1q8y_A          178 KIADLGNACWYDEH-----YTNSIQTREYRSPEVLLGAPWGCGADIWSTACLIFELITGDFLFEPD  238 (373)
T ss_dssp             EECCCTTCEETTBC-----CCSCCSCGGGCCHHHHHTCCCCTHHHHHHHHHHHHHHHHSSCCC---
T ss_pred             EEcccccccccCCC-----CCCCCCCccccCcHHHhCCCCCchHhHHHHHHHHHHHHhCCCCCCCC
Confidence            99999999876432     23457999999999999989999999999999999999999999743

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*

Probab=99.84  E-value=2.5e-22  Score=213.81  Aligned_cols=149  Identities=26%  Similarity=0.397  Sum_probs=125.2

Q ss_pred             hccCCccceeeccC------------CeEEEEEEehHh---------hHHHHHHHHHHHHHHhhcc-hhhHHH-------
Q 045449          627 TDRFSENNLIGIGN------------GMEVAVKVFHQQ---------YERALKSFEDECEVRKRIR-HRNLVK-------  677 (823)
Q Consensus       627 t~~f~~~~~lg~g~------------~~~vavK~~~~~---------~~~~~~~~~~E~~~l~~l~-h~niv~-------  677 (823)
                      .++|...+.||.|+            ++.||||++...         .....+.+.+|+++++++. ||||++       
T Consensus        16 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~   95 (298)
T 1phk_A           16 YENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTYET   95 (298)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEEC
T ss_pred             hhccceeeeecCCCceEEEEEEEcCcCceEEEEEEecccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeeeeeeecc
Confidence            46788888899885            677999998532         2344578899999999995 999998       


Q ss_pred             ---------------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccC
Q 045449          678 ---------------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLS  724 (823)
Q Consensus       678 ---------------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~  724 (823)
                                                       ++.|++.+|+|+|+.+|+||||||+||+++.++.+||+|||+++...
T Consensus        96 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~  175 (298)
T 1phk_A           96 NTFFFLVFDLMKKGELFDYLTEKVTLSEKETRKIMRALLEVICALHKLNIVHRDLKPENILLDDDMNIKLTDFGFSCQLD  175 (298)
T ss_dssp             SSEEEEEEECCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCCTTCEECC
T ss_pred             CCeEEEEEeccCCCcHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCcceEEEcCCCcEEEecccchhhcC
Confidence                                             36788999999999999999999999999999999999999998765


Q ss_pred             CCCccccccccccCCCcCcccccC------CCccccccceehhhhhhccccCCCCCcCCC
Q 045449          725 GEDQLSKQTQTLATIGYMAPEYGT------KGRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       725 ~~~~~~~~~~~~gt~~y~aPE~~~------~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      ....   .....||+.|+|||++.      ...++.++||||+||+++++++|..||...
T Consensus       176 ~~~~---~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~  232 (298)
T 1phk_A          176 PGEK---LREVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFWHR  232 (298)
T ss_dssp             TTCC---BCCCCSCGGGCCHHHHHHHHCTTSCCBCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             CCcc---cccccCCccccCHHHhccccccccccCCcccccHhHHHHHHHHHHCCCCCcCc
Confidence            4322   23457899999999874      456889999999999999999999998654

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*

Probab=99.84  E-value=2.1e-22  Score=217.67  Aligned_cols=148  Identities=28%  Similarity=0.344  Sum_probs=102.3

Q ss_pred             ccCCccceeeccC------------CeEEEEEEehHhh-HHHHHHHHHHHH-HHhhcchhhHHH----------------
Q 045449          628 DRFSENNLIGIGN------------GMEVAVKVFHQQY-ERALKSFEDECE-VRKRIRHRNLVK----------------  677 (823)
Q Consensus       628 ~~f~~~~~lg~g~------------~~~vavK~~~~~~-~~~~~~~~~E~~-~l~~l~h~niv~----------------  677 (823)
                      ++|...+.||.|+            ++.||||++.... .....++..|+. +++.++||||++                
T Consensus        22 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~~~~h~niv~~~~~~~~~~~~~lv~e  101 (327)
T 3aln_A           22 EDLKDLGEIGRGAYGSVNKMVHKPSGQIMAVKRIRSTVDEKEQKQLLMDLDVVMRSSDCPYIVQFYGALFREGDCWICME  101 (327)
T ss_dssp             CSEEC-CEEEECSSEEEEEEEETTTTEEEEEEEEECCCCHHHHHHHHHHHHHHHSSCCCTTBCCEEEEEECSSEEEEEEC
T ss_pred             HHhhehheeccCCCEEEEEEEEcCCCCEEEEEEeecccCchHHHHHHHHHHHHHHcCCCCcEeeeeeEEEeCCceEEEEe
Confidence            5677778888875            6779999996542 334456666666 677789999998                


Q ss_pred             ----------------------------HHHHHHHHhhhcCCC-CEEeccCCCCCEEeCCCCcEEEeecccccccCCCCc
Q 045449          678 ----------------------------IISSSLEYLHFGHSI-PIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQ  728 (823)
Q Consensus       678 ----------------------------~~~~~l~~L~~~h~~-~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~  728 (823)
                                                  ++.|++.+|+|+|+. +|+||||||+||+++.++.+||+|||+++.......
T Consensus       102 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~ivH~dlkp~NIll~~~~~~kl~Dfg~~~~~~~~~~  181 (327)
T 3aln_A          102 LMSTSFDKFYKYVYSVLDDVIPEEILGKITLATVKALNHLKENLKIIHRDIKPSNILLDRSGNIKLCDFGISGQLVDSIA  181 (327)
T ss_dssp             CCSEEHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHHSCCCSCCCGGGEEEETTTEEEECCCSSSCC------
T ss_pred             ecCCChHHHHHHHHhhhcccCcHHHHHHHHHHHHHHHHHHhccCCEeECCCCHHHEEEcCCCCEEEccCCCceecccccc
Confidence                                        356788899999998 999999999999999999999999999987643321


Q ss_pred             cccccccccCCCcCccccc----CCCccccccceehhhhhhccccCCCCCcCCC
Q 045449          729 LSKQTQTLATIGYMAPEYG----TKGRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       729 ~~~~~~~~gt~~y~aPE~~----~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                         .....||+.|+|||++    .+..++.++|||||||+++++++|..||.+.
T Consensus       182 ---~~~~~gt~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~  232 (327)
T 3aln_A          182 ---KTRDAGCRPYMAPERIDPSASRQGYDVRSDVWSLGITLYELATGRFPYPKW  232 (327)
T ss_dssp             ---------------------------CCSHHHHHHHHHHHHHHHHSCCCSSCC
T ss_pred             ---cccCCCCccccCceeeccccCcCCCCchhhHHHHHHHHHHHHHCCCCCCCc
Confidence               2334799999999998    4567899999999999999999999998763

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7

Probab=99.84  E-value=4.7e-22  Score=215.63  Aligned_cols=149  Identities=29%  Similarity=0.388  Sum_probs=114.5

Q ss_pred             HHHHhccCCccceeeccC----------CeEEEEEEehHhhHHHHHHHHHHHHHHhh--cchhhHHH-------------
Q 045449          623 LLRATDRFSENNLIGIGN----------GMEVAVKVFHQQYERALKSFEDECEVRKR--IRHRNLVK-------------  677 (823)
Q Consensus       623 l~~at~~f~~~~~lg~g~----------~~~vavK~~~~~~~~~~~~~~~E~~~l~~--l~h~niv~-------------  677 (823)
                      -....++|...+.||.|+          +..||||++.....   ..+.+|.+++..  ++||||++             
T Consensus        32 ~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~vavK~~~~~~~---~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~  108 (337)
T 3mdy_A           32 QRTIAKQIQMVKQIGKGRYGEVWMGKWRGEKVAVKVFFTTEE---ASWFRETEIYQTVLMRHENILGFIAADIKGTGSWT  108 (337)
T ss_dssp             HTTHHHHCEEEEEEEEETTEEEEEEEETTEEEEEEEEEGGGH---HHHHHHHHHHTSTTCCCTTBCCEEEEEEESCGGGC
T ss_pred             ccccccceEEEeEeecCCCeEEEEEEECCceEEEEEEecccc---chhhhHHHHHHHHhhcCCCeeeEEEEEccCCCCCC
Confidence            334457899999999986          67799999865533   334555555554  49999987             


Q ss_pred             ------------------------------HHHHHHHHhhhcCCC--------CEEeccCCCCCEEeCCCCcEEEeeccc
Q 045449          678 ------------------------------IISSSLEYLHFGHSI--------PIIHCDLKPSNVLLDEDMVAHISDFGI  719 (823)
Q Consensus       678 ------------------------------~~~~~l~~L~~~h~~--------~ivHrdlk~~NiLl~~~~~~kl~DfGl  719 (823)
                                                    ++.|++.+|+|+|+.        +|+||||||+||+++.++.+||+|||+
T Consensus       109 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dikp~Nill~~~~~~kl~Dfg~  188 (337)
T 3mdy_A          109 QLYLITDYHENGSLYDYLKSTTLDAKSMLKLAYSSVSGLCHLHTEIFSTQGKPAIAHRDLKSKNILVKKNGTCCIADLGL  188 (337)
T ss_dssp             EEEEEECCCTTCBHHHHHHHCCBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBCCEECSCCCGGGEEECTTSCEEECCCTT
T ss_pred             ceEEEEeccCCCcHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCCEEecccchHHEEECCCCCEEEEeCCC
Confidence                                          356788888888988        999999999999999999999999999


Q ss_pred             ccccCCCCccc--cccccccCCCcCcccccCCCccccc------cceehhhhhhccccCCCCC
Q 045449          720 AKLLSGEDQLS--KQTQTLATIGYMAPEYGTKGRVSTR------GDVCSFGIISGGKETRSMT  774 (823)
Q Consensus       720 a~~~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~------~Dv~S~Gvv~~~~~~~~~~  774 (823)
                      |+.........  ......||+.|+|||++.+..++.+      +|||||||++|++++|..+
T Consensus       189 a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~el~tg~~~  251 (337)
T 3mdy_A          189 AVKFISDTNEVDIPPNTRVGTKRYMPPEVLDESLNRNHFQSYIMADMYSFGLILWEVARRCVS  251 (337)
T ss_dssp             CEECC---------CCSSCSCGGGCCHHHHTTCCCTTCTHHHHHHHHHHHHHHHHHHHTTBCB
T ss_pred             ceeeccccccccCCCCCCccCcceeChhhcccccCCccccCccccchHHHHHHHHHHHhccCc
Confidence            98764332211  1224579999999999887766554      9999999999999999433

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*

Probab=99.84  E-value=9.6e-23  Score=220.27  Aligned_cols=156  Identities=23%  Similarity=0.313  Sum_probs=124.4

Q ss_pred             HHHHHHHhccCCcc-ceeeccC------------CeEEEEEEehHhh--HHHHHHHHHHHHHHhhc-chhhHHH------
Q 045449          620 YHELLRATDRFSEN-NLIGIGN------------GMEVAVKVFHQQY--ERALKSFEDECEVRKRI-RHRNLVK------  677 (823)
Q Consensus       620 ~~~l~~at~~f~~~-~~lg~g~------------~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l-~h~niv~------  677 (823)
                      |.......++|... +.||.|+            ++.||||++....  ......+.+|+.++.++ +||||++      
T Consensus        20 ~~~~~~~~~~y~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~iv~~~~~~~   99 (327)
T 3lm5_A           20 FQSMENFNNFYILTSKELGRGKFAVVRQCISKSTGQEYAAKFLKKRRRGQDCRAEILHEIAVLELAKSCPRVINLHEVYE   99 (327)
T ss_dssp             SBCHHHHHHHEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESEETTEECHHHHHHHHHHHHHTTTCTTBCCEEEEEE
T ss_pred             HHHHHhhhhEEeeccceeCCCCCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHHhccCCCCEEEEEEEEE
Confidence            33344445666665 7899886            6679999986433  22346789999999999 5699998      


Q ss_pred             ------------------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCC---CCcEEEeecc
Q 045449          678 ------------------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDE---DMVAHISDFG  718 (823)
Q Consensus       678 ------------------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~---~~~~kl~DfG  718 (823)
                                                          ++.|++.+|+|+|+.+|+||||||+||+++.   ++.+||+|||
T Consensus       100 ~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~ql~~~L~~LH~~givH~Dikp~NIl~~~~~~~~~~kL~Dfg  179 (327)
T 3lm5_A          100 NTSEIILILEYAAGGEIFSLCLPELAEMVSENDVIRLIKQILEGVYYLHQNNIVHLDLKPQNILLSSIYPLGDIKIVDFG  179 (327)
T ss_dssp             CSSEEEEEEECCTTEEGGGGGSSCC-CCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEESCBTTBCCEEECCGG
T ss_pred             eCCeEEEEEEecCCCcHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHCCeecCcCChHHEEEecCCCCCcEEEeeCc
Confidence                                                4678999999999999999999999999987   7899999999


Q ss_pred             cccccCCCCccccccccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCC
Q 045449          719 IAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       719 la~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      +++.......   .....||+.|+|||++.+..++.++||||+||+++++++|..||...
T Consensus       180 ~a~~~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~  236 (327)
T 3lm5_A          180 MSRKIGHACE---LREIMGTPEYLAPEILNYDPITTATDMWNIGIIAYMLLTHTSPFVGE  236 (327)
T ss_dssp             GCEEC------------CCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             cccccCCccc---cccccCCcCccCCeeecCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Confidence            9987643322   23457999999999999999999999999999999999999998664

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*

Probab=99.84  E-value=6.7e-23  Score=218.74  Aligned_cols=150  Identities=28%  Similarity=0.313  Sum_probs=120.6

Q ss_pred             hccCCccceeeccC------------CeEEEEEEehHhhHHHHHHHHHHHHHHhhcchhhHHH-----------------
Q 045449          627 TDRFSENNLIGIGN------------GMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVK-----------------  677 (823)
Q Consensus       627 t~~f~~~~~lg~g~------------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~-----------------  677 (823)
                      .++|...+.||.|+            +..||+|++........+.|.+|++++++++||||++                 
T Consensus        18 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   97 (302)
T 2j7t_A           18 NEVWEIVGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYIVEIEILATCDHPYIVKLLGAYYHDGKLWIMIEF   97 (302)
T ss_dssp             GGTEEEEEEEECSTTCCEEEEEETTTCCEEEEEEEC----CCHHHHHHHHHHHHHCCCTTBCCEEEEEECC-CEEEEEEC
T ss_pred             ccceeecceeccCCCeEEEEEEEcCCCcEEEEEEecCCCHHHHHHHHHHHHHHhcCCCCCEeeeeeeeeeCCeEEEEEEe
Confidence            46777788888875            5679999997665555678999999999999999998                 


Q ss_pred             ------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCcccccc
Q 045449          678 ------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQT  733 (823)
Q Consensus       678 ------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~  733 (823)
                                              ++.|++.+|.|+|+.+++||||||+||+++.++.+||+|||+++......  ....
T Consensus        98 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~--~~~~  175 (302)
T 2j7t_A           98 CPGGAVDAIMLELDRGLTEPQIQVVCRQMLEALNFLHSKRIIHRDLKAGNVLMTLEGDIRLADFGVSAKNLKTL--QKRD  175 (302)
T ss_dssp             CTTEEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCSGGGEEECTTSCEEECCCHHHHHHHHHH--HC--
T ss_pred             CCCCcHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHhcCCcccCCCCHHHEEECCCCCEEEEECCCCccccccc--cccc
Confidence                                    35688899999999999999999999999999999999999986432111  1123


Q ss_pred             ccccCCCcCccccc-----CCCccccccceehhhhhhccccCCCCCcCCC
Q 045449          734 QTLATIGYMAPEYG-----TKGRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       734 ~~~gt~~y~aPE~~-----~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      ...||+.|+|||++     ....++.++||||+||+++++.+|..||...
T Consensus       176 ~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~  225 (302)
T 2j7t_A          176 SFIGTPYWMAPEVVMCETMKDTPYDYKADIWSLGITLIEMAQIEPPHHEL  225 (302)
T ss_dssp             ---CCGGGCCHHHHHHHHTTSTTTTTHHHHHHHHHHHHHHHHSSCTTTTS
T ss_pred             cccCChhhcCCeeeccccCCCCCCchhhhHHHHHHHHHHHhcCCCCCccC
Confidence            45789999999987     4667899999999999999999999998764

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*

Probab=99.84  E-value=6.1e-23  Score=219.02  Aligned_cols=152  Identities=27%  Similarity=0.398  Sum_probs=108.3

Q ss_pred             hccCCccceeeccC------------CeEEEEEEehHhh-HHHHHHHHHHHHHHhhcchhhHHH----------------
Q 045449          627 TDRFSENNLIGIGN------------GMEVAVKVFHQQY-ERALKSFEDECEVRKRIRHRNLVK----------------  677 (823)
Q Consensus       627 t~~f~~~~~lg~g~------------~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~----------------  677 (823)
                      .++|...+.||.|+            +..||||++.... ....+++.+|++++++++||||++                
T Consensus        14 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   93 (303)
T 2vwi_A           14 RDDYELQEVIGSGATAVVQAAYCAPKKEKVAIKRINLEKCQTSMDELLKEIQAMSQCHHPNIVSYYTSFVVKDELWLVMK   93 (303)
T ss_dssp             CCCCEEEEECC---CCCEEEEEC----CEEEEECCC----------------CCCCCCCTTBCCEEEEEESSSCEEEEEE
T ss_pred             hhhhhhhheeccccceEEEEEEECCCCcEEEEEEEEhhhcchhHHHHHHHHHHHhhcCCCCEeeEEEEEeecCCcEEEeh
Confidence            46777788888875            5679999986543 344578899999999999999998                


Q ss_pred             --------------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCC
Q 045449          678 --------------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSG  725 (823)
Q Consensus       678 --------------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~  725 (823)
                                                      ++.|++++|+|+|+.+|+||||||+||+++.++.+||+|||+++....
T Consensus        94 ~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~  173 (303)
T 2vwi_A           94 LLSGGSVLDIIKHIVAKGEHKSGVLDESTIATILREVLEGLEYLHKNGQIHRDVKAGNILLGEDGSVQIADFGVSAFLAT  173 (303)
T ss_dssp             CCTTCBHHHHHHHHHHTTTTTTCSSCHHHHHHHHHHHHHHHHHHHHTTCCCCCCSGGGEEECTTCCEEECCCHHHHHCC-
T ss_pred             hccCCchHHHHHHHhhccccccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCCCCChhhEEEcCCCCEEEEeccchheecc
Confidence                                            245788999999999999999999999999999999999999987643


Q ss_pred             CCcc---ccccccccCCCcCcccccCC-CccccccceehhhhhhccccCCCCCcCCC
Q 045449          726 EDQL---SKQTQTLATIGYMAPEYGTK-GRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       726 ~~~~---~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      ....   .......||+.|+|||++.+ ..++.++||||+||+++++.+|..||...
T Consensus       174 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~  230 (303)
T 2vwi_A          174 GGDITRNKVRKTFVGTPCWMAPEVMEQVRGYDFKADIWSFGITAIELATGAAPYHKY  230 (303)
T ss_dssp             --------------CCCTTCCHHHHHHHHCCCTHHHHHHHHHHHHHHHHSSCTTTTS
T ss_pred             CCCccchhhhcccCCCccccCHHHhccccCCCchhhHHHHHHHHHHHHhCCCCCccC
Confidence            3211   11234579999999999865 46899999999999999999999998764

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}

Probab=99.84  E-value=2.1e-22  Score=216.22  Aligned_cols=148  Identities=26%  Similarity=0.352  Sum_probs=123.0

Q ss_pred             hccCCccceeeccC------------CeEEEEEEehHhhHHHHHHHHHHHHHHhhcchhhHHH-----------------
Q 045449          627 TDRFSENNLIGIGN------------GMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVK-----------------  677 (823)
Q Consensus       627 t~~f~~~~~lg~g~------------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~-----------------  677 (823)
                      .++|...+.||.|+            |..||||++....  ..+.+.+|++++.+++||||++                 
T Consensus        28 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~--~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~  105 (314)
T 3com_A           28 EEVFDVLEKLGEGSYGSVYKAIHKETGQIVAIKQVPVES--DLQEIIKEISIMQQCDSPHVVKYYGSYFKNTDLWIVMEY  105 (314)
T ss_dssp             --CEEEEEECC----CEEEEEEETTTCCEEEEEEEETTS--CCHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred             hhhhhhheeeccCCCeEEEEEEECCCCCEEEEEecCchH--HHHHHHHHHHHHHhCCCCCCccEEEEEEeCCEEEEEeec
Confidence            45677788888875            6779999987543  2367899999999999999998                 


Q ss_pred             ------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCcccccc
Q 045449          678 ------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQT  733 (823)
Q Consensus       678 ------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~  733 (823)
                                              ++.|++.+|.|+|+.+++||||||+||+++.++.+||+|||+++.......  ...
T Consensus       106 ~~~~~L~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~--~~~  183 (314)
T 3com_A          106 CGAGSVSDIIRLRNKTLTEDEIATILQSTLKGLEYLHFMRKIHRDIKAGNILLNTEGHAKLADFGVAGQLTDTMA--KRN  183 (314)
T ss_dssp             CTTEEHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTCCEEECCCTTCEECBTTBS--CBC
T ss_pred             CCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCCcCCCcCHHHEEECCCCCEEEeecccchhhhhhcc--ccC
Confidence                                    357888999999999999999999999999999999999999987643321  233


Q ss_pred             ccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCC
Q 045449          734 QTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       734 ~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      ...||+.|+|||++.+..++.++||||+||+++++++|..||...
T Consensus       184 ~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~  228 (314)
T 3com_A          184 TVIGTPFWMAPEVIQEIGYNCVADIWSLGITAIEMAEGKPPYADI  228 (314)
T ss_dssp             CCCSCGGGCCHHHHSSSCBCTTHHHHHHHHHHHHHHHSSCTTTTS
T ss_pred             ccCCCCCccChhhcCCCCCCccccHHHHHHHHHHHHhCCCCCCCC
Confidence            457999999999999989999999999999999999999999764

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*

Probab=99.84  E-value=1.6e-22  Score=238.01  Aligned_cols=151  Identities=23%  Similarity=0.303  Sum_probs=122.4

Q ss_pred             ccCCccceeeccC---------------CeEEEEEEehHh-hHHHHHHHHHHHHHHhhcchhhHHH--------------
Q 045449          628 DRFSENNLIGIGN---------------GMEVAVKVFHQQ-YERALKSFEDECEVRKRIRHRNLVK--------------  677 (823)
Q Consensus       628 ~~f~~~~~lg~g~---------------~~~vavK~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~--------------  677 (823)
                      ++|...+.||+|+               +..||||++... .....+.|.+|+.++++++||||++              
T Consensus       390 ~~y~i~~~LG~G~fG~Vy~a~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~~~~~~lv~  469 (656)
T 2j0j_A          390 ERIELGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVITENPVWIIM  469 (656)
T ss_dssp             GGEEEEEEEECCSSCCEEEEEECCSSSCCEEEEEEECSSTTCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSCEEEE
T ss_pred             ccEEEeeEEeeCCCEEEEEEEEecCCCccEEEEEEEecccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEecCceEEEE
Confidence            5677778888885               245899998643 3455578999999999999999998              


Q ss_pred             --------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCcccc
Q 045449          678 --------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSK  731 (823)
Q Consensus       678 --------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~  731 (823)
                                                ++.|++.+|+|+|+.+|+||||||+|||++.++.+||+|||+++....... ..
T Consensus       470 E~~~~g~L~~~l~~~~~~l~~~~~~~i~~qi~~aL~~LH~~givHrDikp~NILl~~~~~vkL~DFG~a~~~~~~~~-~~  548 (656)
T 2j0j_A          470 ELCTLGELRSFLQVRKFSLDLASLILYAYQLSTALAYLESKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTY-YK  548 (656)
T ss_dssp             ECCTTCBHHHHHHHTTTTCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEEETTEEEECCCCCCCSCCC------
T ss_pred             EcCCCCcHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhCCccccccchHhEEEeCCCCEEEEecCCCeecCCCcc-ee
Confidence                                      356889999999999999999999999999999999999999987644322 12


Q ss_pred             ccccccCCCcCcccccCCCccccccceehhhhhhccccC-CCCCcCCCc
Q 045449          732 QTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKET-RSMTVGETC  779 (823)
Q Consensus       732 ~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~-~~~~~~~~~  779 (823)
                      .....+|+.|+|||++.+..++.++|||||||+++++++ |..||.+..
T Consensus       549 ~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~ellt~g~~Pf~~~~  597 (656)
T 2j0j_A          549 ASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVK  597 (656)
T ss_dssp             -----CCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCC
T ss_pred             ccCCCCCcceeCHHHhcCCCCCchhhHHHHHHHHHHHHHcCCCCCCCCC
Confidence            234567889999999988899999999999999999987 888987653

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*

Probab=99.84  E-value=5.4e-22  Score=216.31  Aligned_cols=149  Identities=22%  Similarity=0.329  Sum_probs=125.7

Q ss_pred             hccCCccceeeccC----------CeEEEEEEehHhhHHH-----------------HHHHHHHHHHHhhcchhhHHH--
Q 045449          627 TDRFSENNLIGIGN----------GMEVAVKVFHQQYERA-----------------LKSFEDECEVRKRIRHRNLVK--  677 (823)
Q Consensus       627 t~~f~~~~~lg~g~----------~~~vavK~~~~~~~~~-----------------~~~~~~E~~~l~~l~h~niv~--  677 (823)
                      .++|...+.||.|+          +..||||++.......                 .+.|.+|++++++++||||++  
T Consensus        30 ~~~y~~~~~lg~G~~g~V~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~  109 (348)
T 2pml_X           30 INDYRIIRTLNQGKFNKIILCEKDNKFYALKKYEKSLLEKKRDFTKSNNDKISIKSKYDDFKNELQIITDIKNEYCLTCE  109 (348)
T ss_dssp             ETTEEEEEEEECCSSCCEEEEEETTEEEEEEEEEHHHHSSCEEECCCSSSSCCEEEHHHHHHHHHHHHTTCCCTTBCCCS
T ss_pred             cCceEEEEEEcCCCCeEEEEEEcCCceEEEEEeecccccchhhhccccchhhhHHhHHHHHHHHHHHHHhCCCCCcceEE
Confidence            35778888888875          6779999997654321                 178999999999999999987  


Q ss_pred             ----------------------------------------------HHHHHHHHhhhcCC-CCEEeccCCCCCEEeCCCC
Q 045449          678 ----------------------------------------------IISSSLEYLHFGHS-IPIIHCDLKPSNVLLDEDM  710 (823)
Q Consensus       678 ----------------------------------------------~~~~~l~~L~~~h~-~~ivHrdlk~~NiLl~~~~  710 (823)
                                                                    ++.|++.+|+|+|+ .+|+||||||+||+++.++
T Consensus       110 ~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~~i~H~dl~p~Nil~~~~~  189 (348)
T 2pml_X          110 GIITNYDEVYIIYEYMENDSILKFDEYFFVLDKNYTCFIPIQVIKCIIKSVLNSFSYIHNEKNICHRDVKPSNILMDKNG  189 (348)
T ss_dssp             EEEESSSEEEEEEECCTTCBSSEESSSEESSCSSSCCCCCHHHHHHHHHHHHHHHHHHHHTSCEECCCCCGGGEEECTTS
T ss_pred             EEEeeCCeEEEEEeccCCCcHHHHHHHhhhhhhccccCCCHHHHHHHHHHHHHHHHHHhccCCEeecCCChHhEEEcCCC
Confidence                                                          35788999999998 9999999999999999999


Q ss_pred             cEEEeecccccccCCCCccccccccccCCCcCcccccCCC-cccc-ccceehhhhhhccccCCCCCcCCCc
Q 045449          711 VAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKG-RVST-RGDVCSFGIISGGKETRSMTVGETC  779 (823)
Q Consensus       711 ~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~-~~Dv~S~Gvv~~~~~~~~~~~~~~~  779 (823)
                      .+||+|||.++.....    ......||+.|+|||++.+. .++. ++||||+||+++++++|..||....
T Consensus       190 ~~kl~dfg~~~~~~~~----~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~  256 (348)
T 2pml_X          190 RVKLSDFGESEYMVDK----KIKGSRGTYEFMPPEFFSNESSYNGAKVDIWSLGICLYVMFYNVVPFSLKI  256 (348)
T ss_dssp             CEEECCCTTCEECBTT----EECSSCSCGGGCCGGGGSSCCCEEHHHHHHHHHHHHHHHHHHSSCSSCCSS
T ss_pred             cEEEeccccccccccc----cccCCCCCcCccCchhhcCCCCCCcchhhHHHHHHHHHHHHhCCCCCCCCC
Confidence            9999999999876433    23346799999999999877 6766 9999999999999999999997643

>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*

Probab=99.84  E-value=5.8e-22  Score=216.45  Aligned_cols=146  Identities=25%  Similarity=0.279  Sum_probs=122.8

Q ss_pred             hccCCccceeeccC-------------CeEEEEEEehHhhHHHHHHHHHHHHHHhhcchhh------HHH----------
Q 045449          627 TDRFSENNLIGIGN-------------GMEVAVKVFHQQYERALKSFEDECEVRKRIRHRN------LVK----------  677 (823)
Q Consensus       627 t~~f~~~~~lg~g~-------------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~n------iv~----------  677 (823)
                      .++|...+.||.|+             +..||||++... ....+.+.+|++++++++|++      ++.          
T Consensus        18 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~-~~~~~~~~~E~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~   96 (355)
T 2eu9_A           18 QERYEIVGNLGEGTFGKVVECLDHARGKSQVALKIIRNV-GKYREAARLEINVLKKIKEKDKENKFLCVLMSDWFNFHGH   96 (355)
T ss_dssp             TTTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSC-HHHHHHHHHHHHHHHHHHHHCTTSCSCBCCEEEEEEETTE
T ss_pred             cccEEEEEEeeccCCeEEEEEEecCCCceEEEEEEEccc-ccchhHHHHHHHHHHHHhhcCCCCceeEEEeeeeeeeCCe
Confidence            36788888888875             367999999754 334578889999999998887      332          


Q ss_pred             -------------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEe-------------------C
Q 045449          678 -------------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLL-------------------D  707 (823)
Q Consensus       678 -------------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl-------------------~  707 (823)
                                                     ++.|++.+|+|+|+.+|+||||||+|||+                   +
T Consensus        97 ~~lv~e~~~~~l~~~l~~~~~~~~~~~~~~~i~~qi~~~L~~lH~~~ivH~Dlkp~NIll~~~~~~~~~~~~~~~~~~~~  176 (355)
T 2eu9_A           97 MCIAFELLGKNTFEFLKENNFQPYPLPHVRHMAYQLCHALRFLHENQLTHTDLKPENILFVNSEFETLYNEHKSCEEKSV  176 (355)
T ss_dssp             EEEEEECCCCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHTTTEECCCCCGGGEEESCCCEEEEECCC-CCCEEEE
T ss_pred             EEEEEeccCCChHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEEeccccccccccccccccccc
Confidence                                           46789999999999999999999999999                   5


Q ss_pred             CCCcEEEeecccccccCCCCccccccccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCC
Q 045449          708 EDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       708 ~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      .++.+||+|||+++.....     .....||+.|+|||++.+..++.++||||+||++|++++|..||...
T Consensus       177 ~~~~~kl~Dfg~~~~~~~~-----~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~  242 (355)
T 2eu9_A          177 KNTSIRVADFGSATFDHEH-----HTTIVATRHYRPPEVILELGWAQPCDVWSIGCILFEYYRGFTLFQTH  242 (355)
T ss_dssp             SCCCEEECCCTTCEETTSC-----CCSSCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred             CCCcEEEeecCcccccccc-----ccCCcCCCcccCCeeeecCCCCCccchHHHHHHHHHHHhCCCCCCCC
Confidence            6789999999999864322     23457999999999999999999999999999999999999999764

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.84  E-value=1.9e-22  Score=240.21  Aligned_cols=233  Identities=22%  Similarity=0.241  Sum_probs=112.4

Q ss_pred             ccchHHHHHHHHHHHHhccCCCccccccccC-CCCCCccceeeeeCCCCCcEEEEEcCCCCCccccCcccCCCCCCcEEE
Q 045449            4 KSIISQHQQALLALKAHISYDHTNLFARNWT-SSTSVCIWIGITCDVNSHRVIGLNISSFNLQGTITPQLGNLSSLQTLD   82 (823)
Q Consensus         4 ~~~~~~~~~aLl~~k~~~~~~~~~~~~~~W~-~~~~~c~w~gv~c~~~~~~v~~L~L~~~~l~g~~~~~l~~l~~L~~L~   82 (823)
                      .++.+.+|+||+++......+....-. .|. ..+.++.|.++.+..  .+++.|+|.++++... +..+     |+.++
T Consensus       127 ~s~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~s~--~~~~~l~L~~n~~~~~-~~~~-----l~~l~  197 (727)
T 4b8c_D          127 KSLVDCTKQALMEMADTLTDSKTAKKQ-QPTGDSTPSGTATNSAVST--PLTPKIELFANGKDEA-NQAL-----LQHKK  197 (727)
T ss_dssp             -----CCCHHHHHHHHHHHHHHTTC-------------------------------------------------------
T ss_pred             hhccccchhhhhhhhhhcccccCcccC-CCcCCCCccccCCCceecC--CccceEEeeCCCCCcc-hhhH-----hhcCc
Confidence            346678899999999886433222222 564 345578899998864  6899999999998863 3333     34444


Q ss_pred             ccCCCCCC---------CCCCCCCCCCCCCEEECCCCcCcCCCchhhhcCCCCcEEecccccccCccCccccCCCCCCcc
Q 045449           83 LSHNKLSG---------NIPSSIFNMHTLKLLDFSDNQLFGSLSSFIFNMSSMTTIDLSINRLSGELPANICKIPSTLSK  153 (823)
Q Consensus        83 Ls~N~l~g---------~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~p~~~~~  153 (823)
                      |+.|.|.+         ..|..|..++.|+.|+|++|.|. .+|..+.++++|++|+|++|+|+ .+|..+       ++
T Consensus       198 Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~-------~~  268 (727)
T 4b8c_D          198 LSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEI-------KN  268 (727)
T ss_dssp             ------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGG-------GG
T ss_pred             cCcccccCccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhh-------hC
Confidence            55444433         45777888888888888888887 66766778888888888888887 555554       78


Q ss_pred             ccccceeeeccceeeccCccccccchhhHHHHHhhcCCCcccCCcccCCcchhhhhccccccccCCccccccCCCCCcEE
Q 045449          154 CKQLEELNLGFNNLSGAIPKEIGNLTKLKEIISTITNSTVCEIPREIGNLPYLARLALATNNLVGVVPVTIFNMSALKEI  233 (823)
Q Consensus       154 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~~l~~n~~~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  233 (823)
                      +++|++|+|++|+|+ .+|..|++                         +++|++|+|++|.|+ .+|..|.++++|++|
T Consensus       269 l~~L~~L~Ls~N~l~-~lp~~~~~-------------------------l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L  321 (727)
T 4b8c_D          269 LSNLRVLDLSHNRLT-SLPAELGS-------------------------CFQLKYFYFFDNMVT-TLPWEFGNLCNLQFL  321 (727)
T ss_dssp             GTTCCEEECTTSCCS-SCCSSGGG-------------------------GTTCSEEECCSSCCC-CCCSSTTSCTTCCCE
T ss_pred             CCCCCEEeCcCCcCC-ccChhhcC-------------------------CCCCCEEECCCCCCC-ccChhhhcCCCccEE
Confidence            888888888888887 55655443                         445566777777776 556667777777777


Q ss_pred             EccCCcccccCCcccccCCCCccEEEeeccccccccCccccCCCCCCeEEeecc
Q 045449          234 SLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSITNSSKLSDLELGEN  287 (823)
Q Consensus       234 ~Ls~N~l~g~lp~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N  287 (823)
                      +|++|.|++.+|..+......+..|+|++|.++|.+|..      |+.|++++|
T Consensus       322 ~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~------l~~l~l~~n  369 (727)
T 4b8c_D          322 GVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE------RRFIEINTD  369 (727)
T ss_dssp             ECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC---------------
T ss_pred             eCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc------cceeEeecc
Confidence            777777776666655431112234667777777766653      445556655

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A

Probab=99.84  E-value=2.1e-22  Score=214.66  Aligned_cols=144  Identities=29%  Similarity=0.372  Sum_probs=113.5

Q ss_pred             HhccCCccceeeccC------------CeEEEEEEehHhhHHHHHHHHHHHHHHhhcchhhHHH----------------
Q 045449          626 ATDRFSENNLIGIGN------------GMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVK----------------  677 (823)
Q Consensus       626 at~~f~~~~~lg~g~------------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~----------------  677 (823)
                      ..++|...+.||.|+            +..||||++... ....+.+.+|++++++++||||++                
T Consensus         4 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~   82 (303)
T 1zy4_A            4 YASDFEEIAVLGQGAFGQVVKARNALDSRYYAIKKIRHT-EEKLSTILSEVMLLASLNHQYVVRYYAAWLERRNFVKPMT   82 (303)
T ss_dssp             HHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEEE-HHHHHHHHHHHHHHTTCCCTTBCCEEEEEEECCCCCC---
T ss_pred             ccccchhhheeccCCcEEEEEEEEcCCCeEEEEEEEecc-HHHHHHHHHHHHHHHhcCchHHHHHHHHHHhhcchhhhhc
Confidence            346788888888885            667999999654 344578999999999999999864                


Q ss_pred             --------------------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeeccc
Q 045449          678 --------------------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGI  719 (823)
Q Consensus       678 --------------------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGl  719 (823)
                                                            ++.|++++|.|+|+.+|+||||||+||+++.++.+||+|||+
T Consensus        83 ~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~i~H~dlkp~Nil~~~~~~~kl~dfg~  162 (303)
T 1zy4_A           83 AVKKKSTLFIQMEYCENGTLYDLIHSENLNQQRDEYWRLFRQILEALSYIHSQGIIHRDLKPMNIFIDESRNVKIGDFGL  162 (303)
T ss_dssp             ---CEEEEEEEEECCCSCBHHHHHHHSCGGGCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTSCEEECCCCC
T ss_pred             ccccCCceEEEEecCCCCCHHHhhhccccccchHHHHHHHHHHHHHHHHHHhCCeecccCCHHhEEEcCCCCEEEeeCcc
Confidence                                                  356889999999999999999999999999999999999999


Q ss_pred             ccccCCCCc------------cccccccccCCCcCcccccCCC-ccccccceehhhhhhccccC
Q 045449          720 AKLLSGEDQ------------LSKQTQTLATIGYMAPEYGTKG-RVSTRGDVCSFGIISGGKET  770 (823)
Q Consensus       720 a~~~~~~~~------------~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~S~Gvv~~~~~~  770 (823)
                      ++.......            ........||+.|+|||++.+. .++.++||||+||++|++++
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~  226 (303)
T 1zy4_A          163 AKNVHRSLDILKLDSQNLPGSSDNLTSAIGTAMYVATEVLDGTGHYNEKIDMYSLGIIFFEMIY  226 (303)
T ss_dssp             CSCTTC-------------------------CTTSCHHHHTSCSCCCTHHHHHHHHHHHHHHHS
T ss_pred             hhhcccccchhccccccccccccccccCCCcccccCcccccCCCCCcchhhHHHHHHHHHHHHh
Confidence            987542210            1122345799999999998764 68999999999999999987

>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*

Probab=99.84  E-value=6.3e-22  Score=214.63  Aligned_cols=145  Identities=26%  Similarity=0.290  Sum_probs=121.4

Q ss_pred             ccCCccceeeccC-------------CeEEEEEEehHhhHHHHHHHHHHHHHHhhcchhh------HHH-----------
Q 045449          628 DRFSENNLIGIGN-------------GMEVAVKVFHQQYERALKSFEDECEVRKRIRHRN------LVK-----------  677 (823)
Q Consensus       628 ~~f~~~~~lg~g~-------------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~n------iv~-----------  677 (823)
                      ++|...+.||.|+             +..||||++... ....+.+.+|++++++++|++      +++           
T Consensus        14 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~-~~~~~~~~~e~~~l~~l~~~~~~~~~~i~~~~~~~~~~~~~   92 (339)
T 1z57_A           14 ARYEIVDTLGEGAFGKVVECIDHKAGGRHVAVKIVKNV-DRYCEAARSEIQVLEHLNTTDPNSTFRCVQMLEWFEHHGHI   92 (339)
T ss_dssp             TTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSS-HHHHHHHHHHHHHHHHHHHHCTTCTTCBCCEEEEEEETTEE
T ss_pred             CceEEEEEEecCCCeEEEEEEecCCCCcEEEEEEEecC-CchhHHHHHHHHHHHHhhhcCCCCceeeEeeecccccCCcE
Confidence            4677777777765             567999999754 344578899999999998886      443           


Q ss_pred             ------------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCC-------------------
Q 045449          678 ------------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDE-------------------  708 (823)
Q Consensus       678 ------------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~-------------------  708 (823)
                                                    ++.|++.+|+|+|+.+|+||||||+||+++.                   
T Consensus        93 ~lv~e~~~~~l~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dlkp~Nil~~~~~~~~~~~~~~~~~~~~~~  172 (339)
T 1z57_A           93 CIVFELLGLSTYDFIKENGFLPFRLDHIRKMAYQICKSVNFLHSNKLTHTDLKPENILFVQSDYTEAYNPKIKRDERTLI  172 (339)
T ss_dssp             EEEEECCCCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESCCCEEEEEC----CEEEEES
T ss_pred             EEEEcCCCCCHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHCCCcCCCCCHHHEEEeccccccccCCcccccccccc
Confidence                                          4678999999999999999999999999987                   


Q ss_pred             CCcEEEeecccccccCCCCccccccccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCC
Q 045449          709 DMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       709 ~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      ++.+||+|||+++.....     .....||+.|+|||++.+..++.++||||+||+++++++|..||...
T Consensus       173 ~~~~kl~Dfg~~~~~~~~-----~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~  237 (339)
T 1z57_A          173 NPDIKVVDFGSATYDDEH-----HSTLVSTRHYRAPEVILALGWSQPCDVWSIGCILIEYYLGFTVFPTH  237 (339)
T ss_dssp             CCCEEECCCSSCEETTSC-----CCSSCSCGGGCCHHHHTTSCCCTHHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred             CCCceEeeCcccccCccc-----cccccCCccccChHHhhCCCCCcchhhHHHHHHHHHHHhCCCCCCCC
Confidence            668999999999874322     23457999999999999989999999999999999999999998764

>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*

Probab=99.84  E-value=9e-22  Score=217.47  Aligned_cols=149  Identities=27%  Similarity=0.318  Sum_probs=121.5

Q ss_pred             HHHhccCCccceeeccC------------CeEEEEEEehHhhHHHHHHHHHHHHHHhhcc-hhh-----HHH--------
Q 045449          624 LRATDRFSENNLIGIGN------------GMEVAVKVFHQQYERALKSFEDECEVRKRIR-HRN-----LVK--------  677 (823)
Q Consensus       624 ~~at~~f~~~~~lg~g~------------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-h~n-----iv~--------  677 (823)
                      ....++|...+.||.|+            +..||||++... ....+++.+|++++..++ |++     |++        
T Consensus        50 ~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~e~~~l~~l~~~~~~~~~~iv~~~~~~~~~  128 (382)
T 2vx3_A           50 EKWMDRYEIDSLIGKGSFGQVVKAYDRVEQEWVAIKIIKNK-KAFLNQAQIEVRLLELMNKHDTEMKYYIVHLKRHFMFR  128 (382)
T ss_dssp             CEETTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSS-HHHHHHHHHHHHHHHHHHHCSSGGGGGBCCEEEEEEET
T ss_pred             CEeeeeEEEEEEEeecCCEEEEEEEEcCCCcEEEEEEEecc-HHHHHHHHHHHHHHHHHHhcccccceeEEEeeeeeccC
Confidence            33467899999999986            567999999754 334567888999888885 443     433        


Q ss_pred             ---------------------------------HHHHHHHHhhhcC--CCCEEeccCCCCCEEeC--CCCcEEEeecccc
Q 045449          678 ---------------------------------IISSSLEYLHFGH--SIPIIHCDLKPSNVLLD--EDMVAHISDFGIA  720 (823)
Q Consensus       678 ---------------------------------~~~~~l~~L~~~h--~~~ivHrdlk~~NiLl~--~~~~~kl~DfGla  720 (823)
                                                       ++.|++.+|.|+|  +.+|+||||||+|||++  .++.+||+|||+|
T Consensus       129 ~~~~lv~e~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~al~~lH~~~~~ivHrDlkp~NIll~~~~~~~~kL~DFG~a  208 (382)
T 2vx3_A          129 NHLCLVFEMLSYNLYDLLRNTNFRGVSLNLTRKFAQQMCTALLFLATPELSIIHCDLKPENILLCNPKRSAIKIVDFGSS  208 (382)
T ss_dssp             TEEEEEEECCCCBHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHTSTTTCEECCCCSGGGEEESSTTSCCEEECCCTTC
T ss_pred             CceEEEEecCCCCHHHHHhhcCcCCCCHHHHHHHHHHHHHHHHHhccCCCCEEcCCCCcccEEEecCCCCcEEEEeccCc
Confidence                                             4567888888888  57999999999999995  4788999999999


Q ss_pred             cccCCCCccccccccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCC
Q 045449          721 KLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       721 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      +.....     ....+||+.|+|||++.+..++.++|||||||+++++++|..||.+.
T Consensus       209 ~~~~~~-----~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~pf~~~  261 (382)
T 2vx3_A          209 CQLGQR-----IYQYIQSRFYRSPEVLLGMPYDLAIDMWSLGCILVEMHTGEPLFSGA  261 (382)
T ss_dssp             EETTCC-----CCSSCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             eecccc-----cccccCCccccChHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence            876432     23467999999999999999999999999999999999999999764

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*

Probab=99.83  E-value=1.4e-21  Score=226.06  Aligned_cols=147  Identities=28%  Similarity=0.379  Sum_probs=123.2

Q ss_pred             ccCCccceeeccC------------CeEEEEEEehHh-hHHHHHHHHHHHHHHhhcchhhHHH-----------------
Q 045449          628 DRFSENNLIGIGN------------GMEVAVKVFHQQ-YERALKSFEDECEVRKRIRHRNLVK-----------------  677 (823)
Q Consensus       628 ~~f~~~~~lg~g~------------~~~vavK~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~-----------------  677 (823)
                      ++|...+.||.|+            |..||||++... .....+.|.+|++++++++||||++                 
T Consensus        14 grY~i~~~LG~G~fG~Vyla~~~~tg~~VAVKvi~~~~~~~~~~~~~~Ei~iL~~L~HpnIV~l~~v~~~~~~~~~~~~~   93 (676)
T 3qa8_A           14 GPWEMKERLGTGGFGYVLRWIHQDTGEQVAIKQCRQELSPKNRERWCLEIQIMKKLNHPNVVSAREVPDGLQKLAPNDLP   93 (676)
T ss_dssp             ---CCCCCCCBCSSSBCCCCCCTTTTCCEEECCCCSCCCHHHHHHHHHHHHHHHHCCBTTBCCEEECCTTTCCCCTTSSC
T ss_pred             CCeEEEEEEeeCCCeEEEEEEECCCCcEEEEEEecccCCHHHHHHHHHHHHHHHhCCCCCCCceeeeecccccccCCCeE
Confidence            6788888888875            567999998654 3455678999999999999999985                 


Q ss_pred             --------------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCC---cEEEeecccccc
Q 045449          678 --------------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDM---VAHISDFGIAKL  722 (823)
Q Consensus       678 --------------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~---~~kl~DfGla~~  722 (823)
                                                      ++.|++.+|+|+|+.||+||||||+||+++.++   .+||+|||+++.
T Consensus        94 ~LVmEy~~ggsL~~~L~~~~~~~~lse~~i~~I~~QLl~aL~yLHs~gIVHrDLKP~NILl~~~g~~~~vKL~DFG~a~~  173 (676)
T 3qa8_A           94 LLAMEYCEGGDLRKYLNQFENCCGLKEGPIRTLLSDISSALRYLHENRIIHRDLKPENIVLQPGPQRLIHKIIDLGYAKE  173 (676)
T ss_dssp             CCEEECCSSCBHHHHHHSSSCTTCCCSSHHHHHHHHHHHHHHHHHHTTBCCCCCCSTTEEEECCSSSCEEEECSCCCCCB
T ss_pred             EEEEEeCCCCCHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHCCCccCCCCHHHeEeecCCCceeEEEcccccccc
Confidence                                            357888999999999999999999999998665   499999999987


Q ss_pred             cCCCCccccccccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCC
Q 045449          723 LSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGE  777 (823)
Q Consensus       723 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~  777 (823)
                      ......   .....||+.|+|||++.+..++.++||||+||++|++++|..||..
T Consensus       174 ~~~~~~---~~~~~gt~~Y~APE~l~~~~~s~ksDIwSLGviLyeLltG~~Pf~~  225 (676)
T 3qa8_A          174 LDQGEL---CTEFVGTLQYLAPELLEQKKYTVTVDYWSFGTLAFECITGFRPFLP  225 (676)
T ss_dssp             TTSCCC---CCCCCSCCTTCSSCSSCCSCCSTTHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             cccccc---cccccCCcccCChHHhccCCCCchhHHHHHHHHHHHHHHCCCCCCc
Confidence            654322   2346799999999999999999999999999999999999999865

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B*

Probab=99.83  E-value=4.6e-22  Score=210.06  Aligned_cols=144  Identities=27%  Similarity=0.390  Sum_probs=122.7

Q ss_pred             hccCCccceeeccC------------CeEEEEEEehHhhHHHHHHHHHHHHHHhhcchhhHHH-----------------
Q 045449          627 TDRFSENNLIGIGN------------GMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVK-----------------  677 (823)
Q Consensus       627 t~~f~~~~~lg~g~------------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~-----------------  677 (823)
                      .++|...+.||.|+            +..||||++....    +.+.+|++++++++||||++                 
T Consensus        10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~   85 (284)
T 2a19_B           10 GMDFKEIELIGSGGFGQVFKAKHRIDGKTYVIKRVKYNN----EKAEREVKALAKLDHVNIVHYNGCWDGFDYDPETSSK   85 (284)
T ss_dssp             HHHEEEEEEEECSSSCCEEEEEETTTCCEEEEEEEECCS----GGGHHHHHHHHHCCCTTBCCEEEEEEEEEEC------
T ss_pred             ccccceeeeeccCCceEEEEEEEcCCCeEEEEEEecccc----HHHHHHHHHHHhCCCCCEEEEeeeEeccccCcccccc
Confidence            45677888888875            6679999987543    45788999999999999974                 


Q ss_pred             -----------------------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEee
Q 045449          678 -----------------------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISD  716 (823)
Q Consensus       678 -----------------------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~D  716 (823)
                                                               ++.|++.+|+|+|+.+|+||||||+||+++.++.+||+|
T Consensus        86 ~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~kl~D  165 (284)
T 2a19_B           86 NSSRSKTKCLFIQMEFCDKGTLEQWIEKRRGEKLDKVLALELFEQITKGVDYIHSKKLINRDLKPSNIFLVDTKQVKIGD  165 (284)
T ss_dssp             ---CCEEEEEEEEECCCCSCBHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEEETTEEEECC
T ss_pred             cccccCcceEEEEEeccCCCCHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHhCCeeeccCCHHHEEEcCCCCEEECc
Confidence                                                     356888999999999999999999999999999999999


Q ss_pred             cccccccCCCCccccccccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCC
Q 045449          717 FGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGE  777 (823)
Q Consensus       717 fGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~  777 (823)
                      ||+++.......   .....||+.|+|||++.+..++.++||||+||++++++++..|+.+
T Consensus       166 fg~~~~~~~~~~---~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~  223 (284)
T 2a19_B          166 FGLVTSLKNDGK---RTRSKGTLRYMSPEQISSQDYGKEVDLYALGLILAELLHVCDTAFE  223 (284)
T ss_dssp             CTTCEESSCCSC---CCCCCSCCTTSCHHHHHCSCCCTHHHHHHHHHHHHHHHSCCSSHHH
T ss_pred             chhheecccccc---ccccCCcccccChhhhccCCCcchhhhHHHHHHHHHHHhcCCcchh
Confidence            999987654322   2345699999999999988999999999999999999999988754

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*

Probab=99.83  E-value=3.1e-22  Score=216.32  Aligned_cols=149  Identities=24%  Similarity=0.345  Sum_probs=118.2

Q ss_pred             ccCCccceeeccC------------Ce--EEEEEEehHhh-HHHHHHHHHHHHHHhhc-chhhHHH--------------
Q 045449          628 DRFSENNLIGIGN------------GM--EVAVKVFHQQY-ERALKSFEDECEVRKRI-RHRNLVK--------------  677 (823)
Q Consensus       628 ~~f~~~~~lg~g~------------~~--~vavK~~~~~~-~~~~~~~~~E~~~l~~l-~h~niv~--------------  677 (823)
                      ++|...+.||.|+            +.  .||||++.... ....+.+.+|++++.++ +||||++              
T Consensus        25 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~lv  104 (327)
T 1fvr_A           25 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLA  104 (327)
T ss_dssp             GGCEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC------CHHHHHHHHHTTCCCCTTBCCEEEEEEETTEEEEE
T ss_pred             HHccceeeeecCCCceEEEEEEccCCcccceeeeeeccccchHHHHHHHHHHHHHHhccCCCchhhhceeeeeCCceEEE
Confidence            5677788898885            33  35899886432 34456799999999999 9999997              


Q ss_pred             ------------------------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEe
Q 045449          678 ------------------------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHIS  715 (823)
Q Consensus       678 ------------------------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~  715 (823)
                                                                ++.|++++|+|+|+.+|+||||||+||+++.++.+||+
T Consensus       105 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~dlkp~NIl~~~~~~~kL~  184 (327)
T 1fvr_A          105 IEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQKQFIHRDLAARNILVGENYVAKIA  184 (327)
T ss_dssp             ECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECGGGCEEEC
T ss_pred             EecCCCCCHHHHHHhcccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhCCccCCCCccceEEEcCCCeEEEc
Confidence                                                      24578889999999999999999999999999999999


Q ss_pred             ecccccccCCCCccccccccccCCCcCcccccCCCccccccceehhhhhhccccC-CCCCcCCCc
Q 045449          716 DFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKET-RSMTVGETC  779 (823)
Q Consensus       716 DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~-~~~~~~~~~  779 (823)
                      |||+++.....   .......+++.|+|||++.+..++.++||||+||+++++++ |..||.+..
T Consensus       185 Dfg~~~~~~~~---~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~pf~~~~  246 (327)
T 1fvr_A          185 DFGLSRGQEVY---VKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMT  246 (327)
T ss_dssp             CTTCEESSCEE---CCC----CCTTTCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCC
T ss_pred             ccCcCcccccc---ccccCCCCCccccChhhhccccCCchhcchHHHHHHHHHHcCCCCCCCCCc
Confidence            99999753221   12233457889999999988889999999999999999998 999987643

>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B

Probab=99.83  E-value=2.5e-22  Score=216.84  Aligned_cols=151  Identities=30%  Similarity=0.352  Sum_probs=124.0

Q ss_pred             HHhccCCccceeeccC-------------CeEEEEEEehHhh--HHHHHHHHHHHHHHhhc---chhhHHH---------
Q 045449          625 RATDRFSENNLIGIGN-------------GMEVAVKVFHQQY--ERALKSFEDECEVRKRI---RHRNLVK---------  677 (823)
Q Consensus       625 ~at~~f~~~~~lg~g~-------------~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l---~h~niv~---------  677 (823)
                      ++.++|...+.||.|+             +..||||++....  ......+.+|+++++++   +||||++         
T Consensus         8 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~~   87 (326)
T 1blx_A            8 RADQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSR   87 (326)
T ss_dssp             CGGGTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEEE
T ss_pred             CchhceeeeeeecccccEEEEEEEecCCCCEEEEEEEeccCcccccCCchhhHHHHHHHhhhccCCCCeEeeeeeeeecc
Confidence            3557888888888875             5679999986432  11123567788877776   8999987         


Q ss_pred             -------------------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccc
Q 045449          678 -------------------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIA  720 (823)
Q Consensus       678 -------------------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla  720 (823)
                                                           ++.|++++|+|+|+.||+||||||+||+++.++.+||+|||++
T Consensus        88 ~~~~~~~~lv~e~~~~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~gi~H~dlkp~Nili~~~~~~kl~Dfg~~  167 (326)
T 1blx_A           88 TDRETKLTLVFEHVDQDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLHSHRVVHRDLKPQNILVTSSGQIKLADFGLA  167 (326)
T ss_dssp             CSSEEEEEEEEECCSCBHHHHHHHSCTTCSCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTCCEEECSCCSC
T ss_pred             cCCCceEEEEEecCCCCHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHCCceeccCCHHHeEEcCCCCEEEecCccc
Confidence                                                 3568899999999999999999999999999999999999999


Q ss_pred             cccCCCCccccccccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCC
Q 045449          721 KLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       721 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      +......   ......||+.|+|||++.+..++.++||||+||+++++++|..||.+.
T Consensus       168 ~~~~~~~---~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~  222 (326)
T 1blx_A          168 RIYSFQM---ALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGS  222 (326)
T ss_dssp             CCCCGGG---GGCCCCCCCTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred             ccccCCC---CccccccccceeCHHHHhcCCCCcchhHHHHHHHHHHHHcCCCCCCCC
Confidence            8754322   233467899999999999989999999999999999999999999764

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}

Probab=99.83  E-value=4.7e-22  Score=213.78  Aligned_cols=149  Identities=28%  Similarity=0.340  Sum_probs=107.5

Q ss_pred             hccCCccceeeccC------------CeEEEEEEehHhh--HHHHHHHHHHHHHHhhcchhhHHH---------------
Q 045449          627 TDRFSENNLIGIGN------------GMEVAVKVFHQQY--ERALKSFEDECEVRKRIRHRNLVK---------------  677 (823)
Q Consensus       627 t~~f~~~~~lg~g~------------~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~---------------  677 (823)
                      .++|...+.||.|+            |..||||++....  ....+.+..+..+++.++||||++               
T Consensus        24 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lv~  103 (318)
T 2dyl_A           24 INDLENLGEMGSGTCGQVWKMRFRKTGHVIAVKQMRRSGNKEENKRILMDLDVVLKSHDCPYIVQCFGTFITNTDVFIAM  103 (318)
T ss_dssp             GGGEEEEEEC------CEEEEEETTTCCEEEEEEEETTSCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEE
T ss_pred             hccccccceeeecCCeeEEEEEEecCCeEEEEEEecccccchHHHHHHHHHHHHHHhcCCCceeeEEEEEecCCcEEEEE
Confidence            35566667777764            6789999996542  233344555666788889999998               


Q ss_pred             -------------------------HHHHHHHHhhhcCCC-CEEeccCCCCCEEeCCCCcEEEeecccccccCCCCcccc
Q 045449          678 -------------------------IISSSLEYLHFGHSI-PIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSK  731 (823)
Q Consensus       678 -------------------------~~~~~l~~L~~~h~~-~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~  731 (823)
                                               ++.|++++|+|+|+. +|+||||||+||+++.++.+||+|||+++.......   
T Consensus       104 e~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~~~---  180 (318)
T 2dyl_A          104 ELMGTCAEKLKKRMQGPIPERILGKMTVAIVKALYYLKEKHGVIHRDVKPSNILLDERGQIKLCDFGISGRLVDDKA---  180 (318)
T ss_dssp             CCCSEEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCGGGEEECTTSCEEECCCTTC-----------
T ss_pred             eccCCcHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHhhCCEEeCCCCHHHEEECCCCCEEEEECCCchhccCCcc---
Confidence                                     356888899999985 999999999999999999999999999986543321   


Q ss_pred             ccccccCCCcCcccccC-----CCccccccceehhhhhhccccCCCCCcCCC
Q 045449          732 QTQTLATIGYMAPEYGT-----KGRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       732 ~~~~~gt~~y~aPE~~~-----~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      .....||+.|+|||++.     ...++.++|||||||+++++++|..||...
T Consensus       181 ~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~  232 (318)
T 2dyl_A          181 KDRSAGCAAYMAPERIDPPDPTKPDYDIRADVWSLGISLVELATGQFPYKNC  232 (318)
T ss_dssp             ------CCTTCCHHHHC--------CCTHHHHHHHHHHHHHHHHSSCTTTTC
T ss_pred             ccccCCCccccChhhcccccccccCCccccchhhHHHHHHHHHhCCCCCCCC
Confidence            23457999999999984     456889999999999999999999999763

>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A

Probab=99.82  E-value=1.1e-21  Score=212.67  Aligned_cols=143  Identities=19%  Similarity=0.184  Sum_probs=118.0

Q ss_pred             hccCCccceeeccC----------CeEEEEEEehHhh--------HHHHHHHHHHHHHHhhcc-----------------
Q 045449          627 TDRFSENNLIGIGN----------GMEVAVKVFHQQY--------ERALKSFEDECEVRKRIR-----------------  671 (823)
Q Consensus       627 t~~f~~~~~lg~g~----------~~~vavK~~~~~~--------~~~~~~~~~E~~~l~~l~-----------------  671 (823)
                      .++|...+.||+|+          |+.||||++....        ....+.+.+|++++++++                 
T Consensus        19 ~~~y~~~~~lG~G~~g~V~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~~~~~~~h~niv~l~   98 (336)
T 2vuw_A           19 TEKLQRCEKIGEGVFGEVFQTIADHTPVAIKIIAIEGPDLVNGSHQKTFEEILPEIIISKELSLLSGEVCNRTEGFIGLN   98 (336)
T ss_dssp             HHHHHTCEEEEEETTEEEEEEEETTEEEEEEEEEESCSSCBTTBCCBCHHHHHHHHHHHHHHHHGGGCSSSBCCCBCCEE
T ss_pred             cccchheeeecccCceEEEEEEeCCceEEEEEEecCCccccccccchhHHHHHHHHHHHHHHHHhhccccccCCchhhhc
Confidence            35677788899886          6789999997542        223367889999999887                 


Q ss_pred             ---------hhhHHH----------------------------------------------------HHHHHHHHhhhcC
Q 045449          672 ---------HRNLVK----------------------------------------------------IISSSLEYLHFGH  690 (823)
Q Consensus       672 ---------h~niv~----------------------------------------------------~~~~~l~~L~~~h  690 (823)
                               ||||++                                                    ++.|++.+|+|+|
T Consensus        99 ~~~~~~~~~hp~iv~~~~~~~~~~~~~~~~~~~~~~~~~~lv~E~~~~g~ll~~~~~~~~~~~~~~~i~~qi~~aL~~lH  178 (336)
T 2vuw_A           99 SVHCVQGSYPPLLLKAWDHYNSTKGSANDRPDFFKDDQLFIVLEFEFGGIDLEQMRTKLSSLATAKSILHQLTASLAVAE  178 (336)
T ss_dssp             EEEEEESSCCHHHHHHHHHHHHHTCCSSCCSCCCCTTCEEEEEEEECCCEETGGGTTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             ceeEecCCCcHHHHHHHHHHhhhccccccCccccccCeEEEEEEecCCCccHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence                     888876                                                    3568899999999


Q ss_pred             -CCCEEeccCCCCCEEeCCCC--------------------cEEEeecccccccCCCCccccccccccCCCcCcccccCC
Q 045449          691 -SIPIIHCDLKPSNVLLDEDM--------------------VAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTK  749 (823)
Q Consensus       691 -~~~ivHrdlk~~NiLl~~~~--------------------~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~  749 (823)
                       +.+|+||||||+|||++.++                    .+||+|||+|+.....       ..+||+.|+|||++.+
T Consensus       179 ~~~~ivHrDlKp~NILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFG~a~~~~~~-------~~~gt~~y~aPE~~~g  251 (336)
T 2vuw_A          179 ASLRFEHRDLHWGNVLLKKTSLKKLHYTLNGKSSTIPSCGLQVSIIDYTLSRLERDG-------IVVFCDVSMDEDLFTG  251 (336)
T ss_dssp             HHHCCBCSCCCGGGEEEEECSCSEEEEEETTEEEEEECTTEEEEECCCTTCBEEETT-------EEECCCCTTCSGGGCC
T ss_pred             HhCCEeECCCCHHHEEEeccCCcceeeeccCccccccCCCceEEEeeccccEecCCC-------cEEEeecccChhhhcC
Confidence             99999999999999999876                    8999999999876422       3479999999999986


Q ss_pred             Cccccccceehhhhh-hccccCCCCCcCC
Q 045449          750 GRVSTRGDVCSFGII-SGGKETRSMTVGE  777 (823)
Q Consensus       750 ~~~~~~~Dv~S~Gvv-~~~~~~~~~~~~~  777 (823)
                      .. +.++||||+|++ .+++..|..||.+
T Consensus       252 ~~-~~~~Diwsl~~~~~~~~~~g~~p~~~  279 (336)
T 2vuw_A          252 DG-DYQFDIYRLMKKENNNRWGEYHPYSN  279 (336)
T ss_dssp             CS-SHHHHHHHHHHHHHTTCTTSCCTHHH
T ss_pred             CC-ccceehhhhhCCCCcccccccCCCcc
Confidence            65 889999998777 7888888888854

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.82  E-value=5.6e-20  Score=187.59  Aligned_cols=165  Identities=23%  Similarity=0.283  Sum_probs=129.6

Q ss_pred             ccCCCCCCccceeeeeCCCCCcEEEEEcCCCCCccccCcccCCCCCCcEEEccCCCCCCCCCCCCCCCCCCCEEECCCCc
Q 045449           32 NWTSSTSVCIWIGITCDVNSHRVIGLNISSFNLQGTITPQLGNLSSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQ  111 (823)
Q Consensus        32 ~W~~~~~~c~w~gv~c~~~~~~v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~  111 (823)
                      -|..+.+.|+|.+|.|+..            ++. .+|..+.  ++|++|+|++|+|++..|..|..+++|++|+|++|+
T Consensus        11 ~~~~~~~~Cs~~~v~c~~~------------~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~   75 (229)
T 3e6j_A           11 AACPSQCSCSGTTVDCRSK------------RHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQ   75 (229)
T ss_dssp             CCCCTTCEEETTEEECTTS------------CCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             ccCCCCCEEeCCEeEccCC------------CcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCC
Confidence            4566788999999999742            233 4555443  889999999999999989999999999999999999


Q ss_pred             CcCCCchhhhcCCCCcEEecccccccCccCccccCCCCCCccccccceeeeccceeeccCccccccchhhHHHHHhhcCC
Q 045449          112 LFGSLSSFIFNMSSMTTIDLSINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEIGNLTKLKEIISTITNS  191 (823)
Q Consensus       112 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~~l~~n~  191 (823)
                      |++..+..|.++++|++|+|++|+|++..+..       |..+++|++|+|++|+++ .+|..+                
T Consensus        76 l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~-------~~~l~~L~~L~Ls~N~l~-~lp~~~----------------  131 (229)
T 3e6j_A           76 LGALPVGVFDSLTQLTVLDLGTNQLTVLPSAV-------FDRLVHLKELFMCCNKLT-ELPRGI----------------  131 (229)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT-------TTTCTTCCEEECCSSCCC-SCCTTG----------------
T ss_pred             CCCcChhhcccCCCcCEEECCCCcCCccChhH-------hCcchhhCeEeccCCccc-ccCccc----------------
Confidence            98777788899999999999999998544433       478899999999999887 445433                


Q ss_pred             CcccCCcccCCcchhhhhccccccccCCccccccCCCCCcEEEccCCcccccC
Q 045449          192 TVCEIPREIGNLPYLARLALATNNLVGVVPVTIFNMSALKEISLLNNSLSGSL  244 (823)
Q Consensus       192 ~~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~l  244 (823)
                               ..+++|++|+|++|+|++..+..|..+++|+.|+|++|.+++..
T Consensus       132 ---------~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c  175 (229)
T 3e6j_A          132 ---------ERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC  175 (229)
T ss_dssp             ---------GGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred             ---------ccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence                     34456677788888888766667777777888888877776543

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}

Probab=99.82  E-value=1e-22  Score=219.11  Aligned_cols=152  Identities=26%  Similarity=0.317  Sum_probs=116.9

Q ss_pred             hccCCccceeeccC---------CeEEEEEEehHhh--HHHHHHHHHHHHHHhhcchhhHHH------------------
Q 045449          627 TDRFSENNLIGIGN---------GMEVAVKVFHQQY--ERALKSFEDECEVRKRIRHRNLVK------------------  677 (823)
Q Consensus       627 t~~f~~~~~lg~g~---------~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~------------------  677 (823)
                      .++|...+.||.|+         +..||||++....  ....+.|.+|++++++++||||++                  
T Consensus        32 ~~~~~~~~~lg~G~~g~V~~~~~~~~~avk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~iv~e~~  111 (319)
T 2y4i_B           32 FEQLEIGELIGKGRFGQVYHGRWHGEVAIRLIDIERDNEDQLKAFKREVMAYRQTRHENVVLFMGACMSPPHLAIITSLC  111 (319)
T ss_dssp             CSCEECCCBCCCSSSSEEEEEEESSSEEEEECCCCSCCCCCCCCCCTTGGGGTTCCCTTBCCCCEEEECSSCEEEECBCC
T ss_pred             HHHeEEeeEeccCCceEEEEEEEcCeEEEEEeecCCCCHHHHHHHHHHHHHHhcCCCCCEeEEEEEEecCCceEEEeecc
Confidence            46677788888886         2348899886432  222356889999999999999998                  


Q ss_pred             -----------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCc---ccc
Q 045449          678 -----------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQ---LSK  731 (823)
Q Consensus       678 -----------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~---~~~  731 (823)
                                             ++.|++.+|+|+|+.+|+||||||+||+++ ++.+||+|||+++.......   ...
T Consensus       112 ~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH~~~i~H~dlkp~NIl~~-~~~~~l~Dfg~~~~~~~~~~~~~~~~  190 (319)
T 2y4i_B          112 KGRTLYSVVRDAKIVLDVNKTRQIAQEIVKGMGYLHAKGILHKDLKSKNVFYD-NGKVVITDFGLFSISGVLQAGRREDK  190 (319)
T ss_dssp             CSEEHHHHTTSSCCCCCSHHHHHHHHHHHHHHHHHHHTTCCCCCCCSTTEEEC---CCEECCCSCCC----------CCS
T ss_pred             cCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCChhhEEEe-CCCEEEeecCCccccccccccccccc
Confidence                                   467889999999999999999999999998 67999999999876532111   112


Q ss_pred             ccccccCCCcCcccccCC---------CccccccceehhhhhhccccCCCCCcCCCc
Q 045449          732 QTQTLATIGYMAPEYGTK---------GRVSTRGDVCSFGIISGGKETRSMTVGETC  779 (823)
Q Consensus       732 ~~~~~gt~~y~aPE~~~~---------~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~~  779 (823)
                      .....||+.|+|||++.+         ..++.++|||||||+++++++|..||....
T Consensus       191 ~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~  247 (319)
T 2y4i_B          191 LRIQNGWLCHLAPEIIRQLSPDTEEDKLPFSKHSDVFALGTIWYELHAREWPFKTQP  247 (319)
T ss_dssp             CBCCSGGGGTSCHHHHSCBSCC--CCCSCCCHHHHHHHHHHHHHHHHHSSCSSSSCC
T ss_pred             cccCCCcccccChHHhhhccccccccccCCCchhhHHHHHHHHHHHHhCCCCCCCCC
Confidence            234568999999998864         457899999999999999999999997653

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...

Probab=99.82  E-value=2.1e-22  Score=216.87  Aligned_cols=148  Identities=22%  Similarity=0.292  Sum_probs=121.4

Q ss_pred             hccCCccceeeccC------------CeEEEEEEehHhhH------HHHHHHHHHHHHHhhcc--hhhHHH---------
Q 045449          627 TDRFSENNLIGIGN------------GMEVAVKVFHQQYE------RALKSFEDECEVRKRIR--HRNLVK---------  677 (823)
Q Consensus       627 t~~f~~~~~lg~g~------------~~~vavK~~~~~~~------~~~~~~~~E~~~l~~l~--h~niv~---------  677 (823)
                      .++|...+.||.|+            +..||||++.....      ...+.+.+|++++++++  |+||++         
T Consensus        42 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~i~~~~~~~~~~~  121 (320)
T 3a99_A           42 ESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFERPD  121 (320)
T ss_dssp             TTTEEEEEECSSSSSCEEEEEEETTTTEEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEEEECSS
T ss_pred             cCceEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEecccchhhhhhhhhhHHHHHHHHHHhhccCCCCceEEEEEEecCC
Confidence            46677778888875            67799999975431      12245778999999996  588887         


Q ss_pred             --------------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeC-CCCcEEEeecccccccC
Q 045449          678 --------------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLD-EDMVAHISDFGIAKLLS  724 (823)
Q Consensus       678 --------------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~-~~~~~kl~DfGla~~~~  724 (823)
                                                      ++.|++++|+|+|+.+|+||||||+||+++ +++.+||+|||+++...
T Consensus       122 ~~~lv~e~~~~~~~L~~~l~~~~~l~~~~~~~i~~qi~~~L~~LH~~~ivH~Dlkp~NIll~~~~~~~kL~Dfg~~~~~~  201 (320)
T 3a99_A          122 SFVLILERPEPVQDLFDFITERGALQEELARSFFWQVLEAVRHCHNCGVLHRDIKDENILIDLNRGELKLIDFGSGALLK  201 (320)
T ss_dssp             EEEEEEECCSSEEEHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEETTTTEEEECCCTTCEECC
T ss_pred             cEEEEEEcCCCCccHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCcEeCCCCHHHEEEeCCCCCEEEeeCccccccc
Confidence                                            356889999999999999999999999999 77999999999998765


Q ss_pred             CCCccccccccccCCCcCcccccCCCcc-ccccceehhhhhhccccCCCCCcCCC
Q 045449          725 GEDQLSKQTQTLATIGYMAPEYGTKGRV-STRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       725 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      ...    .....||+.|+|||++.+..+ +.++|||||||+++++++|..||...
T Consensus       202 ~~~----~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~  252 (320)
T 3a99_A          202 DTV----YTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHD  252 (320)
T ss_dssp             SSC----BCCCCSCGGGSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSH
T ss_pred             ccc----ccCCCCCccCCChHHhccCCCCCccchHHhHHHHHHHHHHCCCCCCCh
Confidence            322    234579999999999877665 78899999999999999999998754

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.82  E-value=7.4e-20  Score=185.41  Aligned_cols=155  Identities=19%  Similarity=0.203  Sum_probs=97.6

Q ss_pred             eEEEeecCCCCccCCccccccccccceEEecCCcceeccC-ccccCcccccEEEcccCcCCCCchhcccccCCCCEEEcc
Q 045449          333 KVLIVTGNPLDGILPKSIGNFSLSLETILMANCSISGNIP-QVVGNLSNLLVLELGGNNLTGPIPVTFSQLQTLQAFDLT  411 (823)
Q Consensus       333 ~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls  411 (823)
                      +.+++++|.++. +|..+.   ..+++|+|++|+|++..| ..|..+++|++|+|++|++++..+..|..+++|++|+|+
T Consensus        14 ~~l~~s~n~l~~-iP~~~~---~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls   89 (220)
T 2v70_A           14 TTVDCSNQKLNK-IPEHIP---QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT   89 (220)
T ss_dssp             TEEECCSSCCSS-CCSCCC---TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CEeEeCCCCccc-CccCCC---CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence            356666666664 454433   345667777777766643 346666667777777777666555566666666666666


Q ss_pred             CCCCCCcchHhhhcCCCCCEEEcccCcCcccccccccCCCCCCeEeccCCccccccchhhhccCCCcEEecccccccccc
Q 045449          412 RNKLAGPITDELCHLARLHSLVLQGNKFSGSIPSCLGNLTSVRVLYLGLNIFTSVLSSTIWNLKDILFIDVSSNFLDGPL  491 (823)
Q Consensus       412 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~~  491 (823)
                      +|++++..+..|..+++|++|+|++|+|++..|..|..+++|+.|+|++|++++..|..+..+++|+.|+|++|.+++..
T Consensus        90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c  169 (220)
T 2v70_A           90 SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNC  169 (220)
T ss_dssp             SSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSG
T ss_pred             CCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCC
Confidence            66666666666666666666666666666666666666666666666666666655666666666666666666655443

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*

Probab=99.82  E-value=7.9e-22  Score=208.88  Aligned_cols=150  Identities=27%  Similarity=0.380  Sum_probs=123.7

Q ss_pred             HhccCCccceeeccC------------CeEEEEEEehHhh--HHHHHHHHHHHHHHhhcchhhHHH--------------
Q 045449          626 ATDRFSENNLIGIGN------------GMEVAVKVFHQQY--ERALKSFEDECEVRKRIRHRNLVK--------------  677 (823)
Q Consensus       626 at~~f~~~~~lg~g~------------~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~--------------  677 (823)
                      ..++|...+.||.|+            ++.||||++....  ....+.+.+|++++++++||||++              
T Consensus        20 ~~~~y~i~~~lg~G~~g~V~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv   99 (287)
T 2wei_A           20 FAERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILEDSSSFYIV   99 (287)
T ss_dssp             HHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGBSSSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             HhhcceeeEEEcCCCCEEEEEEEEcCCCcEEEEEEecccccchHHHHHHHHHHHHHHhccCCCccEEEEEEeCCCeEEEE
Confidence            346788888999885            5679999986543  233467999999999999999998              


Q ss_pred             --------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCC---CcEEEeecccccccCCCCc
Q 045449          678 --------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDED---MVAHISDFGIAKLLSGEDQ  728 (823)
Q Consensus       678 --------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~---~~~kl~DfGla~~~~~~~~  728 (823)
                                                ++.|++.+|.|+|+.+|+||||||+||+++.+   +.+||+|||+++.......
T Consensus       100 ~e~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~~l~~LH~~~i~H~dl~p~NIlv~~~~~~~~~kL~Dfg~~~~~~~~~~  179 (287)
T 2wei_A          100 GELYTGGELFDEIIKRKRFSEHDAARIIKQVFSGITYMHKHNIVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQQNTK  179 (287)
T ss_dssp             ECCCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEESCSSTTCCEEECSTTGGGTBCCCSS
T ss_pred             EEccCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCChhhEEEecCCCcccEEEeccCcceeecCCCc
Confidence                                      35788999999999999999999999999754   4799999999987643322


Q ss_pred             cccccccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCCc
Q 045449          729 LSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGETC  779 (823)
Q Consensus       729 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~~  779 (823)
                         .....||+.|+|||++.+ .++.++||||+||+++++++|..||....
T Consensus       180 ---~~~~~~~~~y~aPE~~~~-~~~~~~Di~slG~~l~~l~~g~~p~~~~~  226 (287)
T 2wei_A          180 ---MKDRIGTAYYIAPEVLRG-TYDEKCDVWSAGVILYILLSGTPPFYGKN  226 (287)
T ss_dssp             ---CSCHHHHHTTCCHHHHTT-CCCTHHHHHHHHHHHHHHHHSSCSSCCSS
T ss_pred             ---cccccCcccccChHHhcC-CCCCchhhHhHHHHHHHHHhCCCCCCCCC
Confidence               233468999999998865 58999999999999999999999987643

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.81  E-value=6.8e-20  Score=185.69  Aligned_cols=159  Identities=17%  Similarity=0.216  Sum_probs=144.9

Q ss_pred             ccceEEecCCcceeccCccccCcccccEEEcccCcCCCCch-hcccccCCCCEEEccCCCCCCcchHhhhcCCCCCEEEc
Q 045449          356 SLETILMANCSISGNIPQVVGNLSNLLVLELGGNNLTGPIP-VTFSQLQTLQAFDLTRNKLAGPITDELCHLARLHSLVL  434 (823)
Q Consensus       356 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  434 (823)
                      .-+++++++|.++. +|..+.  ..+++|+|++|++++..| ..|..+++|++|+|++|+|++..+..|.++++|++|+|
T Consensus        12 ~~~~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~L   88 (220)
T 2v70_A           12 EGTTVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILL   88 (220)
T ss_dssp             ETTEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCCEeEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEEC
Confidence            34689999999985 566553  457899999999997755 45899999999999999999888889999999999999


Q ss_pred             ccCcCcccccccccCCCCCCeEeccCCccccccchhhhccCCCcEEeccccccccccCccccCCCCCcEEEcccCCCCCC
Q 045449          435 QGNKFSGSIPSCLGNLTSVRVLYLGLNIFTSVLSSTIWNLKDILFIDVSSNFLDGPLSLDIGNLKVVIGLDFSRNNLSGD  514 (823)
Q Consensus       435 s~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~  514 (823)
                      ++|++++..|..|..+++|++|+|++|++++..|..+..+++|+.|+|++|.+++..|..+..++.|+.|++++|.+++.
T Consensus        89 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~  168 (220)
T 2v70_A           89 TSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN  168 (220)
T ss_dssp             CSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred             CCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence            99999998888999999999999999999999999999999999999999999999999999999999999999999987


Q ss_pred             CCC
Q 045449          515 IPI  517 (823)
Q Consensus       515 ip~  517 (823)
                      .+.
T Consensus       169 c~l  171 (220)
T 2v70_A          169 CYL  171 (220)
T ss_dssp             GGG
T ss_pred             Cch
Confidence            663

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}

Probab=99.81  E-value=1e-21  Score=210.67  Aligned_cols=151  Identities=22%  Similarity=0.310  Sum_probs=120.2

Q ss_pred             HHHhccCCccceeeccC------------CeEEEEEEehHhhH------HHHHHHHHHHHHHhhc----chhhHHH----
Q 045449          624 LRATDRFSENNLIGIGN------------GMEVAVKVFHQQYE------RALKSFEDECEVRKRI----RHRNLVK----  677 (823)
Q Consensus       624 ~~at~~f~~~~~lg~g~------------~~~vavK~~~~~~~------~~~~~~~~E~~~l~~l----~h~niv~----  677 (823)
                      ....++|...+.||.|+            +..||||++.....      .....+.+|++++.++    +||||++    
T Consensus        27 ~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~h~~i~~~~~~  106 (312)
T 2iwi_A           27 EAFEAEYRLGPLLGKGGFGTVFAGHRLTDRLQVAIKVIPRNRVLGWSPLSDSVTCPLEVALLWKVGAGGGHPGVIRLLDW  106 (312)
T ss_dssp             ------CEEEEEEEEETTEEEEEEECTTTCCEEEEEECCSTTTC--------CCCCHHHHHHHHHHSSCCCSSBCCEEEE
T ss_pred             hhhhhceEEeeEEEcCCCEEEEEEEEccCCeEEEEEEEecccccccccchhhHHHHHHHHHHHhhcccCCCCCeeeEEEE
Confidence            34457899999999886            56799999964421      2234567899999999    8999998    


Q ss_pred             -------------------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeC-CCCcEEEeeccc
Q 045449          678 -------------------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLD-EDMVAHISDFGI  719 (823)
Q Consensus       678 -------------------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~-~~~~~kl~DfGl  719 (823)
                                                           ++.|++++|+|+|+.+|+||||||+||+++ .++.+||+|||+
T Consensus       107 ~~~~~~~~~v~e~~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~~kl~dfg~  186 (312)
T 2iwi_A          107 FETQEGFMLVLERPLPAQDLFDYITEKGPLGEGPSRCFFGQVVAAIQHCHSRGVVHRDIKDENILIDLRRGCAKLIDFGS  186 (312)
T ss_dssp             C-----CEEEEECCSSEEEHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHHTEECCCCSGGGEEEETTTTEEEECCCSS
T ss_pred             EecCCeEEEEEEecCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeeecCCChhhEEEeCCCCeEEEEEcch
Confidence                                                 356889999999999999999999999999 889999999999


Q ss_pred             ccccCCCCccccccccccCCCcCcccccCCCcc-ccccceehhhhhhccccCCCCCcCCC
Q 045449          720 AKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRV-STRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       720 a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      ++......    .....||+.|+|||++.+..+ +.++||||+||+++++++|..||...
T Consensus       187 ~~~~~~~~----~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~  242 (312)
T 2iwi_A          187 GALLHDEP----YTDFDGTRVYSPPEWISRHQYHALPATVWSLGILLYDMVCGDIPFERD  242 (312)
T ss_dssp             CEECCSSC----BCCCCSCTTTSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSH
T ss_pred             hhhcccCc----ccccCCcccccCceeeecCCCCCccchHHHHHHHHHHHHHCCCCCCCh
Confidence            98765332    234569999999999877666 45899999999999999999998654

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.81  E-value=5.2e-20  Score=201.53  Aligned_cols=178  Identities=23%  Similarity=0.252  Sum_probs=122.3

Q ss_pred             eEEEeecCCCCccCCccccccccccceEEecCCcceeccCcccc-CcccccEEEcccCcCCCCchhcccccCCCCEEEcc
Q 045449          333 KVLIVTGNPLDGILPKSIGNFSLSLETILMANCSISGNIPQVVG-NLSNLLVLELGGNNLTGPIPVTFSQLQTLQAFDLT  411 (823)
Q Consensus       333 ~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~p~~~~-~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls  411 (823)
                      +.+++++|.++. +|..+.   ..++.|+|++|+|++..+..|. ++++|++|+|++|+|++..+..|..+++|++|+|+
T Consensus        21 ~~l~c~~~~l~~-iP~~~~---~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls   96 (361)
T 2xot_A           21 NILSCSKQQLPN-VPQSLP---SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS   96 (361)
T ss_dssp             TEEECCSSCCSS-CCSSCC---TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CEEEeCCCCcCc-cCccCC---CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence            456666666664 454433   4567777777777777777676 77777777777777776666667777777777777


Q ss_pred             CCCCCCcchHhhhcCCCCCEEEcccCcCcccccccccCCCCCCeEeccCCccccccchhh---hccCCCcEEeccccccc
Q 045449          412 RNKLAGPITDELCHLARLHSLVLQGNKFSGSIPSCLGNLTSVRVLYLGLNIFTSVLSSTI---WNLKDILFIDVSSNFLD  488 (823)
Q Consensus       412 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~---~~l~~L~~LdLs~N~l~  488 (823)
                      +|+|++..+..|.++++|+.|+|++|+|++..|..|.++++|+.|+|++|++++..+..+   ..+++|+.|||++|.|+
T Consensus        97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~  176 (361)
T 2xot_A           97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK  176 (361)
T ss_dssp             SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred             CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence            777776666667777777777777777777767777777777777777777777554444   45777777777777777


Q ss_pred             cccCccccCCCC--CcEEEcccCCCCCC
Q 045449          489 GPLSLDIGNLKV--VIGLDFSRNNLSGD  514 (823)
Q Consensus       489 g~~p~~~~~l~~--L~~L~ls~N~l~g~  514 (823)
                      +..+..+..++.  ++.|+|++|.+.+.
T Consensus       177 ~l~~~~~~~l~~~~l~~l~l~~N~~~C~  204 (361)
T 2xot_A          177 KLPLTDLQKLPAWVKNGLYLHNNPLECD  204 (361)
T ss_dssp             CCCHHHHHHSCHHHHTTEECCSSCEECC
T ss_pred             ccCHHHhhhccHhhcceEEecCCCccCC
Confidence            555555666655  36677777766643

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.81  E-value=1.6e-21  Score=225.37  Aligned_cols=131  Identities=19%  Similarity=0.104  Sum_probs=94.8

Q ss_pred             CeEEEEEEehHh----------hHHHHHHHHHHHHHHhhc-chhhHHH--------------------------------
Q 045449          641 GMEVAVKVFHQQ----------YERALKSFEDECEVRKRI-RHRNLVK--------------------------------  677 (823)
Q Consensus       641 ~~~vavK~~~~~----------~~~~~~~~~~E~~~l~~l-~h~niv~--------------------------------  677 (823)
                      |..||||++...          .+...++|.+|+++|+++ .|+||++                                
T Consensus       259 g~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~~ed~~~~yLVMEyv~G~~L~d~i~~~~~  338 (569)
T 4azs_A          259 GEDYVCKFFYYDMPHGILTAEESQRNKYELHNEIKFLTQPPAGFDAPAVLAHGENAQSGWLVMEKLPGRLLSDMLAAGEE  338 (569)
T ss_dssp             CSSEEEEEEESSCSTTCSCHHHHHHHHHHHHHHHHHHHSCCTTCCCCCEEEEEECSSEEEEEEECCCSEEHHHHHHTTCC
T ss_pred             cceeEEEEEecccccccchhhhhHHHHHHHHHHHHHHHhcCCCCCeeEEEEEEEECCEEEEEEecCCCCcHHHHHHhCCC
Confidence            567999998532          245567899999999999 7999998                                


Q ss_pred             -----HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccCCCcc
Q 045449          678 -----IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRV  752 (823)
Q Consensus       678 -----~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~  752 (823)
                           +++|++++|+|+|++|||||||||+|||++.++.+||+|||+|+......  ......+||++|||||++.+ .+
T Consensus       339 l~~~~I~~QIl~AL~ylH~~GIIHRDIKPeNILL~~dg~vKL~DFGlAr~~~~~~--~~~~t~vGTp~YmAPE~l~g-~~  415 (569)
T 4azs_A          339 IDREKILGSLLRSLAALEKQGFWHDDVRPWNVMVDARQHARLIDFGSIVTTPQDC--SWPTNLVQSFFVFVNELFAE-NK  415 (569)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTTCEESCCCGGGEEECTTSCEEECCCTTEESCC-----CCSHHHHHHHHHHHHHHC-----
T ss_pred             CCHHHHHHHHHHHHHHHHHCCceeccCchHhEEECCCCCEEEeecccCeeCCCCC--ccccCceechhhccHHHhCC-CC
Confidence                 57899999999999999999999999999999999999999998765432  23345789999999999865 56


Q ss_pred             ccccceehhhhhhccccCCCCC
Q 045449          753 STRGDVCSFGIISGGKETRSMT  774 (823)
Q Consensus       753 ~~~~Dv~S~Gvv~~~~~~~~~~  774 (823)
                      ..++|+||+|++.++++++..+
T Consensus       416 ~~~~d~~s~g~~~~~l~~~~~~  437 (569)
T 4azs_A          416 SWNGFWRSAPVHPFNLPQPWSN  437 (569)
T ss_dssp             -------------CCCCTTHHH
T ss_pred             CCcccccccccchhhhccccch
Confidence            7789999999998888776543

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.81  E-value=1.3e-19  Score=210.39  Aligned_cols=241  Identities=20%  Similarity=0.254  Sum_probs=146.2

Q ss_pred             cchhhhhccccccccCCccccccCCCCCcEEEccCCcccccCCcccccCCCCccEEEeeccccccccCccccCCCCCCeE
Q 045449          203 LPYLARLALATNNLVGVVPVTIFNMSALKEISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSITNSSKLSDL  282 (823)
Q Consensus       203 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~lp~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  282 (823)
                      +..+..+.++.+.+....+  +..+++|+.|++++|.++ .+|. +. .+++|+.|+|++|+|++..|  +..+++|+.|
T Consensus        20 l~~l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~-~l~~-l~-~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L   92 (605)
T 1m9s_A           20 FAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQG-IQ-YLPNVTKLFLNGNKLTDIKP--LTNLKNLGWL   92 (605)
T ss_dssp             HHHHHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCC-CCTT-GG-GCTTCCEEECTTSCCCCCGG--GGGCTTCCEE
T ss_pred             HHHHHHHhccCCCcccccc--hhcCCCCCEEECcCCCCC-CChH-Hc-cCCCCCEEEeeCCCCCCChh--hccCCCCCEE
Confidence            3455667777777775443  456778888888888877 4553 33 37778888888887776544  7777777777


Q ss_pred             EeecccccccCCCccCCCcccCcccccCccccCCCCcccccccccCCCCceEEEeecCCCCccCCccccccccccceEEe
Q 045449          283 ELGENLFSGFIPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGILPKSIGNFSLSLETILM  362 (823)
Q Consensus       283 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L  362 (823)
                      +|++|.+++.  +.+..+++|+.|+|++|.+++.       ..+..+++|+.|+|++|.++                   
T Consensus        93 ~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l-------~~l~~l~~L~~L~Ls~N~l~-------------------  144 (605)
T 1m9s_A           93 FLDENKIKDL--SSLKDLKKLKSLSLEHNGISDI-------NGLVHLPQLESLYLGNNKIT-------------------  144 (605)
T ss_dssp             ECCSSCCCCC--TTSTTCTTCCEEECTTSCCCCC-------GGGGGCTTCSEEECCSSCCC-------------------
T ss_pred             ECcCCCCCCC--hhhccCCCCCEEEecCCCCCCC-------ccccCCCccCEEECCCCccC-------------------
Confidence            7777777753  2566666666666666666543       23444555555555555444                   


Q ss_pred             cCCcceeccCccccCcccccEEEcccCcCCCCchhcccccCCCCEEEccCCCCCCcchHhhhcCCCCCEEEcccCcCccc
Q 045449          363 ANCSISGNIPQVVGNLSNLLVLELGGNNLTGPIPVTFSQLQTLQAFDLTRNKLAGPITDELCHLARLHSLVLQGNKFSGS  442 (823)
Q Consensus       363 ~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~  442 (823)
                            +.  ..+..+++|+.|+|++|++++..|  +..+++|+.|+|++|+|++. | .+..+++|+.|+|++|.+++.
T Consensus       145 ------~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l-~-~l~~l~~L~~L~L~~N~l~~~  212 (605)
T 1m9s_A          145 ------DI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLNK  212 (605)
T ss_dssp             ------CC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEECCSEEEECC
T ss_pred             ------Cc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEccCCcCcCC
Confidence                  32  345566777777777777776555  67777777777777777754 2 467777777777777777754


Q ss_pred             ccccccCCCCCCeEeccCCccccccchhhhccCCCcEEeccccccccccCccccCCCCC
Q 045449          443 IPSCLGNLTSVRVLYLGLNIFTSVLSSTIWNLKDILFIDVSSNFLDGPLSLDIGNLKVV  501 (823)
Q Consensus       443 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L  501 (823)
                      ....+..+..+..+..-           -+.....+.+...++...|.++..+..+...
T Consensus       213 p~~~~~~l~~~~~l~~l-----------~g~~~~~~~i~~~g~~~~~~i~~~l~~~~~~  260 (605)
T 1m9s_A          213 PINHQSNLVVPNTVKNT-----------DGSLVTPEIISDDGDYEKPNVKWHLPEFTNE  260 (605)
T ss_dssp             CCCCCSSCEEECCCBCS-----------SSCBCCCSEESTTCEEETTEEECCCSSCCSE
T ss_pred             cccccccEEeccccccc-----------CCCCcCchhcccCCcccCCcceeccccccce
Confidence            33333322222111100           0112233455556666666666555555443

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.81  E-value=1e-19  Score=192.89  Aligned_cols=172  Identities=20%  Similarity=0.328  Sum_probs=100.9

Q ss_pred             cCCCCceEEEeecCCCCccCCccccccccccceEEecCCcceeccCccccCcccccEEEcccCcCCCCchhcccccCCCC
Q 045449          327 TNCKKLKVLIVTGNPLDGILPKSIGNFSLSLETILMANCSISGNIPQVVGNLSNLLVLELGGNNLTGPIPVTFSQLQTLQ  406 (823)
Q Consensus       327 ~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~  406 (823)
                      ..+++|+.|++++|.++.. | .+..+ ++|++|++++|++++..+  +..+++|++|+|++|++++ +| .+..+++|+
T Consensus        43 ~~l~~L~~L~l~~~~i~~~-~-~~~~l-~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~  115 (291)
T 1h6t_A           43 NELNSIDQIIANNSDIKSV-Q-GIQYL-PNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLK  115 (291)
T ss_dssp             HHHHTCCEEECTTSCCCCC-T-TGGGC-TTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCC
T ss_pred             hhcCcccEEEccCCCcccC-h-hHhcC-CCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCC
Confidence            3445555555555555533 2 24444 455666666666554433  5566666666666666653 22 256666666


Q ss_pred             EEEccCCCCCCcchHhhhcCCCCCEEEcccCcCcccccccccCCCCCCeEeccCCccccccchhhhccCCCcEEeccccc
Q 045449          407 AFDLTRNKLAGPITDELCHLARLHSLVLQGNKFSGSIPSCLGNLTSVRVLYLGLNIFTSVLSSTIWNLKDILFIDVSSNF  486 (823)
Q Consensus       407 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~  486 (823)
                      +|+|++|++++.  ..+..+++|+.|++++|++++.  ..+..+++|+.|+|++|++++..|  +..+++|+.|++++|.
T Consensus       116 ~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~  189 (291)
T 1h6t_A          116 SLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH  189 (291)
T ss_dssp             EEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred             EEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCc
Confidence            666666666643  3455666666666666666643  456666666666666666666544  6666666666666666


Q ss_pred             cccccCccccCCCCCcEEEcccCCCCC
Q 045449          487 LDGPLSLDIGNLKVVIGLDFSRNNLSG  513 (823)
Q Consensus       487 l~g~~p~~~~~l~~L~~L~ls~N~l~g  513 (823)
                      +++. | .+..++.|+.|++++|+++.
T Consensus       190 i~~l-~-~l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          190 ISDL-R-ALAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             CCBC-G-GGTTCTTCSEEEEEEEEEEC
T ss_pred             CCCC-h-hhccCCCCCEEECcCCcccC
Confidence            6653 2 36666666666666666653

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*

Probab=99.81  E-value=3.7e-21  Score=208.56  Aligned_cols=144  Identities=25%  Similarity=0.284  Sum_probs=96.6

Q ss_pred             hccCCc-cceeeccC------------CeEEEEEEehHhhHHHHHHHHHHHHHHhhcchhhHHH----------------
Q 045449          627 TDRFSE-NNLIGIGN------------GMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVK----------------  677 (823)
Q Consensus       627 t~~f~~-~~~lg~g~------------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~----------------  677 (823)
                      .++|.. .++||.|+            ++.||||++..... ..+++   ...+..+.||||++                
T Consensus        27 ~~~y~i~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~-~~~e~---~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~  102 (336)
T 3fhr_A           27 TDDYQLSKQVLGLGVNGKVLECFHRRTGQKCALKLLYDSPK-ARQEV---DHHWQASGGPHIVCILDVYENMHHGKRCLL  102 (336)
T ss_dssp             GGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESSHH-HHHHH---HHHHHHTTSTTBCCEEEEEEEEETTEEEEE
T ss_pred             cceeEecceeeeeCCCeEEEEEEECCCCCEEEEEEecCcHH-HHHHH---HHHHHhcCCCChHHHHHHHhhccCCCceEE
Confidence            567777 45689886            67799999965422 22222   22345668999887                


Q ss_pred             ------------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCC---CCcEEEeecccccccC
Q 045449          678 ------------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDE---DMVAHISDFGIAKLLS  724 (823)
Q Consensus       678 ------------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~---~~~~kl~DfGla~~~~  724 (823)
                                                    ++.|++.+|+|+|+.+|+||||||+||+++.   ++.+||+|||+++...
T Consensus       103 lv~e~~~gg~L~~~l~~~~~~~l~~~~~~~i~~ql~~~l~~LH~~~ivH~dlkp~NIll~~~~~~~~~kl~Dfg~~~~~~  182 (336)
T 3fhr_A          103 IIMECMEGGELFSRIQERGDQAFTEREAAEIMRDIGTAIQFLHSHNIAHRDVKPENLLYTSKEKDAVLKLTDFGFAKETT  182 (336)
T ss_dssp             EEEECCTTEEHHHHHHTC-CCCCBHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEESCSSTTCCEEECCCTTCEEC-
T ss_pred             EEEeccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEEecCCCceEEEeccccceecc
Confidence                                          4678899999999999999999999999975   4569999999998654


Q ss_pred             CCCccccccccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCC
Q 045449          725 GEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       725 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      ...    .....||+.|+|||++.+..++.++||||+||+++++++|..||...
T Consensus       183 ~~~----~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~  232 (336)
T 3fhr_A          183 QNA----LQTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGFPPFYSN  232 (336)
T ss_dssp             -------------------------CHHHHHHHHHHHHHHHHHHHHSSCCC---
T ss_pred             ccc----cccCCCCcCccChhhhCCCCCCchhhHHHHHHHHHHHHHCCCCCCCc
Confidence            321    23457899999999998889999999999999999999999998654

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.81  E-value=4.1e-21  Score=228.16  Aligned_cols=142  Identities=23%  Similarity=0.291  Sum_probs=121.0

Q ss_pred             ccCCccceeeccC-------------CeEEEEEEehHh-hHHHHHHHHHHHHHHhhcchhhHHH----------------
Q 045449          628 DRFSENNLIGIGN-------------GMEVAVKVFHQQ-YERALKSFEDECEVRKRIRHRNLVK----------------  677 (823)
Q Consensus       628 ~~f~~~~~lg~g~-------------~~~vavK~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~----------------  677 (823)
                      ++|...+.||.|+             ++.||||++... .....+.|.+|++++.+++||||++                
T Consensus        80 ~~y~i~~~lg~G~~g~Vy~a~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~~~  159 (681)
T 2pzi_A           80 GQYEVKGCIAHGGLGWIYLALDRNVNGRPVVLKGLVHSGDAEAQAMAMAERQFLAEVVHPSIVQIFNFVEHTDRHGDPVG  159 (681)
T ss_dssp             TTEEEEEEEEEETTEEEEEEEEGGGTTEEEEEEESCSSCCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEEECTTSCEEE
T ss_pred             CceEEEEEEeeCCCeEEEEEEEcCCCCcEEEEEEeCccCCHHHHHHHHHHHHHHHhcCCCCcCeEeeeEeecCCCCCcee
Confidence            6788888898875             567999988643 3455678999999999999999997                


Q ss_pred             ---------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccc
Q 045449          678 ---------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLS  730 (823)
Q Consensus       678 ---------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~  730 (823)
                                                 ++.|++.+|+|+|+.+|+||||||+|||++.+ .+||+|||+++.....    
T Consensus       160 ~lv~E~~~g~~L~~~~~~~l~~~~~~~~~~qi~~aL~~lH~~giiHrDlkp~NIll~~~-~~kl~DFG~a~~~~~~----  234 (681)
T 2pzi_A          160 YIVMEYVGGQSLKRSKGQKLPVAEAIAYLLEILPALSYLHSIGLVYNDLKPENIMLTEE-QLKLIDLGAVSRINSF----  234 (681)
T ss_dssp             EEEEECCCCEECC----CCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECSS-CEEECCCTTCEETTCC----
T ss_pred             EEEEEeCCCCcHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHCCCeecccChHHeEEeCC-cEEEEecccchhcccC----
Confidence                                       46789999999999999999999999999975 8999999999876432    


Q ss_pred             cccccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCC
Q 045449          731 KQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGE  777 (823)
Q Consensus       731 ~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~  777 (823)
                        ....||+.|+|||++.++ ++.++|||||||+++++.+|..|+.+
T Consensus       235 --~~~~gt~~y~aPE~~~~~-~~~~sDi~slG~~l~~l~~g~~~~~~  278 (681)
T 2pzi_A          235 --GYLYGTPGFQAPEIVRTG-PTVATDIYTVGRTLAALTLDLPTRNG  278 (681)
T ss_dssp             --SCCCCCTTTSCTTHHHHC-SCHHHHHHHHHHHHHHHHSCCCEETT
T ss_pred             --CccCCCccccCHHHHcCC-CCCceehhhhHHHHHHHHhCCCCCcc
Confidence              345799999999988654 48899999999999999999887765

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.81  E-value=6.1e-22  Score=228.63  Aligned_cols=204  Identities=17%  Similarity=0.173  Sum_probs=128.0

Q ss_pred             cCCCCCCeEEeecccccccCCCccCCCcccCcccccCcc-------------ccCCCCcccccccccCCCCceEEE-eec
Q 045449          274 TNSSKLSDLELGENLFSGFIPNTIGNLRNLEFGNIADNY-------------LTSSTPELSFLSSLTNCKKLKVLI-VTG  339 (823)
Q Consensus       274 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~-------------l~~~~~~~~~~~~l~~l~~L~~L~-Ls~  339 (823)
                      ..+++|+.|+|++|+++ .+|..++++++|+.|++++|.             +.+.     .+..++++++|+.|+ ++.
T Consensus       346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~-----~~~~l~~l~~L~~L~~l~~  419 (567)
T 1dce_A          346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLY-----EKETLQYFSTLKAVDPMRA  419 (567)
T ss_dssp             STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGG-----HHHHHHHHHHHHHHCGGGH
T ss_pred             ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccC-----CHHHHHHHHhcccCcchhh
Confidence            34455666666666665 445666666666666665443             1111     233444444454444 333


Q ss_pred             CCCCccCCccccccccccceEEecCCcceeccCccccCcccccEEEcccCcCCCCchhcccccCCCCEEEccCCCCCCcc
Q 045449          340 NPLDGILPKSIGNFSLSLETILMANCSISGNIPQVVGNLSNLLVLELGGNNLTGPIPVTFSQLQTLQAFDLTRNKLAGPI  419 (823)
Q Consensus       340 N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~  419 (823)
                      |.+            ..|..+.+++|.++...+      ..|+.|+|++|+|++ +|. |+.+++|+.|+|++|+|+ .+
T Consensus       420 n~~------------~~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~l  478 (567)
T 1dce_A          420 AYL------------DDLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-AL  478 (567)
T ss_dssp             HHH------------HHHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CC
T ss_pred             ccc------------chhhhhhhhcccccccCc------cCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-cc
Confidence            332            234444455555554322      136777777777775 555 777777777777777777 66


Q ss_pred             hHhhhcCCCCCEEEcccCcCcccccccccCCCCCCeEeccCCcccccc-chhhhccCCCcEEeccccccccccCcc---c
Q 045449          420 TDELCHLARLHSLVLQGNKFSGSIPSCLGNLTSVRVLYLGLNIFTSVL-SSTIWNLKDILFIDVSSNFLDGPLSLD---I  495 (823)
Q Consensus       420 p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~LdLs~N~l~g~~p~~---~  495 (823)
                      |..|+++++|+.|+|++|.|++ +| .++.+++|+.|+|++|++++.+ |..++.+++|+.|+|++|.+++..|..   +
T Consensus       479 p~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~  556 (567)
T 1dce_A          479 PPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLA  556 (567)
T ss_dssp             CGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHH
T ss_pred             chhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHH
Confidence            7777777777777777777775 56 6777777777777777777766 777777777777777777777765532   2


Q ss_pred             cCCCCCcEEEc
Q 045449          496 GNLKVVIGLDF  506 (823)
Q Consensus       496 ~~l~~L~~L~l  506 (823)
                      ..++.|+.||+
T Consensus       557 ~~lp~L~~L~l  567 (567)
T 1dce_A          557 EMLPSVSSILT  567 (567)
T ss_dssp             HHCTTCSEEEC
T ss_pred             HHCcccCccCC
Confidence            34677777764

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.81  E-value=2.7e-22  Score=231.55  Aligned_cols=202  Identities=17%  Similarity=0.203  Sum_probs=153.0

Q ss_pred             CCCccEEEeeccccccccCccccCCCCCCeEEeeccc-------------ccccCCCccCCCcccCccc-ccCccccCCC
Q 045449          252 LPNVETLNLGINSFSGTIPSSITNSSKLSDLELGENL-------------FSGFIPNTIGNLRNLEFGN-IADNYLTSST  317 (823)
Q Consensus       252 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~-------------l~~~~p~~~~~l~~L~~L~-L~~N~l~~~~  317 (823)
                      +++|+.|+|+.|+++ .+|..++++++|+.|++++|.             +.+.+|..++.+++|+.|+ ++.|.+..  
T Consensus       348 ~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~--  424 (567)
T 1dce_A          348 DEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD--  424 (567)
T ss_dssp             TTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH--
T ss_pred             CccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccch--
Confidence            455555555555554 455555555555555555443             5667788888888888888 67665532  


Q ss_pred             CcccccccccCCCCceEEEeecCCCCccCCccccccccccceEEecCCcceeccCccccCcccccEEEcccCcCCCCchh
Q 045449          318 PELSFLSSLTNCKKLKVLIVTGNPLDGILPKSIGNFSLSLETILMANCSISGNIPQVVGNLSNLLVLELGGNNLTGPIPV  397 (823)
Q Consensus       318 ~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~  397 (823)
                                    |+.+.+++|.++...+       ..|++|+|++|+|++ +|. |+.+++|+.|+|++|+|+ .+|.
T Consensus       425 --------------L~~l~l~~n~i~~l~~-------~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~  480 (567)
T 1dce_A          425 --------------LRSKFLLENSVLKMEY-------ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPP  480 (567)
T ss_dssp             --------------HHHHHHHHHHHHHHHH-------TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCG
T ss_pred             --------------hhhhhhhcccccccCc-------cCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccch
Confidence                          3344556666654321       357888888888886 565 888999999999999998 7888


Q ss_pred             cccccCCCCEEEccCCCCCCcchHhhhcCCCCCEEEcccCcCcccc-cccccCCCCCCeEeccCCccccccch---hhhc
Q 045449          398 TFSQLQTLQAFDLTRNKLAGPITDELCHLARLHSLVLQGNKFSGSI-PSCLGNLTSVRVLYLGLNIFTSVLSS---TIWN  473 (823)
Q Consensus       398 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~-p~~~~~l~~L~~L~Ls~N~l~~~~p~---~~~~  473 (823)
                      .|+.+++|++|+|++|+|++ +| .++.+++|+.|+|++|+|++.+ |..++.+++|+.|+|++|.+++.+|.   .+..
T Consensus       481 ~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~  558 (567)
T 1dce_A          481 ALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEM  558 (567)
T ss_dssp             GGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHH
T ss_pred             hhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHH
Confidence            89999999999999999997 56 7889999999999999999887 89999999999999999999987653   3455


Q ss_pred             cCCCcEEec
Q 045449          474 LKDILFIDV  482 (823)
Q Consensus       474 l~~L~~LdL  482 (823)
                      +++|+.||+
T Consensus       559 lp~L~~L~l  567 (567)
T 1dce_A          559 LPSVSSILT  567 (567)
T ss_dssp             CTTCSEEEC
T ss_pred             CcccCccCC
Confidence            889999875

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.80  E-value=1e-19  Score=211.32  Aligned_cols=191  Identities=24%  Similarity=0.304  Sum_probs=103.6

Q ss_pred             CccEEEeeccccccccCccccCCCCCCeEEeecccccccCCCccCCCcccCcccccCccccCCCCcccccccccCCCCce
Q 045449          254 NVETLNLGINSFSGTIPSSITNSSKLSDLELGENLFSGFIPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLK  333 (823)
Q Consensus       254 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~l~~L~  333 (823)
                      ++..+.++.+.+....+  +..+++|+.|++++|.+... | .+..+++|+.|+|++|.+++..       .+..+++|+
T Consensus        22 ~l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~-------~l~~l~~L~   90 (605)
T 1m9s_A           22 ETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIK-------PLTNLKNLG   90 (605)
T ss_dssp             HHHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCG-------GGGGCTTCC
T ss_pred             HHHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCCh-------hhccCCCCC
Confidence            34444555555553332  34555666666666666543 2 3555555555555555555431       144455555


Q ss_pred             EEEeecCCCCccCCccccccccccceEEecCCcceeccCccccCcccccEEEcccCcCCCCchhcccccCCCCEEEccCC
Q 045449          334 VLIVTGNPLDGILPKSIGNFSLSLETILMANCSISGNIPQVVGNLSNLLVLELGGNNLTGPIPVTFSQLQTLQAFDLTRN  413 (823)
Q Consensus       334 ~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N  413 (823)
                      .|+|++|.+++.                           ..+..+++|+.|+|++|++++ + ..+..+++|+.|+|++|
T Consensus        91 ~L~Ls~N~l~~l---------------------------~~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N  141 (605)
T 1m9s_A           91 WLFLDENKIKDL---------------------------SSLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNN  141 (605)
T ss_dssp             EEECCSSCCCCC---------------------------TTSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSS
T ss_pred             EEECcCCCCCCC---------------------------hhhccCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCC
Confidence            555555554431                           134555556666666666553 2 23555566666666666


Q ss_pred             CCCCcchHhhhcCCCCCEEEcccCcCcccccccccCCCCCCeEeccCCccccccchhhhccCCCcEEeccccccccc
Q 045449          414 KLAGPITDELCHLARLHSLVLQGNKFSGSIPSCLGNLTSVRVLYLGLNIFTSVLSSTIWNLKDILFIDVSSNFLDGP  490 (823)
Q Consensus       414 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~  490 (823)
                      +|++.  ..+..+++|+.|+|++|.|++..|  +..+++|+.|+|++|++++.  ..+..+++|+.|+|++|.+++.
T Consensus       142 ~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~  212 (605)
T 1m9s_A          142 KITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNK  212 (605)
T ss_dssp             CCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred             ccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCC
Confidence            66543  345556666666666666665444  55566666666666666553  2455566666666666666543

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.80  E-value=2.1e-19  Score=182.14  Aligned_cols=153  Identities=20%  Similarity=0.251  Sum_probs=109.0

Q ss_pred             eEEEeecCCCCccCCccccccccccceEEecCCcceeccCccccCcccccEEEcccCcCCCCchhcccccCCCCEEEccC
Q 045449          333 KVLIVTGNPLDGILPKSIGNFSLSLETILMANCSISGNIPQVVGNLSNLLVLELGGNNLTGPIPVTFSQLQTLQAFDLTR  412 (823)
Q Consensus       333 ~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~  412 (823)
                      +.+++++|.++. +|..+.   .++++|++++|+|++..+..|..+++|++|+|++|++++..|..|.++++|++|+|++
T Consensus        14 ~~v~c~~~~l~~-iP~~l~---~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~   89 (220)
T 2v9t_B           14 NIVDCRGKGLTE-IPTNLP---ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG   89 (220)
T ss_dssp             TEEECTTSCCSS-CCSSCC---TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred             CEEEcCCCCcCc-CCCccC---cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence            467778887774 454433   5677777777777777677777777777777777777766677777777777777777


Q ss_pred             CCCCCcchHhhhcCCCCCEEEcccCcCcccccccccCCCCCCeEeccCCccccccchhhhccCCCcEEecccccccc
Q 045449          413 NKLAGPITDELCHLARLHSLVLQGNKFSGSIPSCLGNLTSVRVLYLGLNIFTSVLSSTIWNLKDILFIDVSSNFLDG  489 (823)
Q Consensus       413 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g  489 (823)
                      |+|+...+..|..+++|+.|+|++|++++..|..|..+++|+.|+|++|++++..+..+..+++|+.|+|++|.+..
T Consensus        90 N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c  166 (220)
T 2v9t_B           90 NKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC  166 (220)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             CcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence            77776555556777777777777777777667777777777777777777777666666666677777777776654

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.80  E-value=2.9e-19  Score=181.02  Aligned_cols=154  Identities=21%  Similarity=0.295  Sum_probs=103.6

Q ss_pred             ceEEecCCcceeccCccccCcccccEEEcccCcCCCCchhcccccCCCCEEEccCCCCCCcchHhhhcCCCCCEEEcccC
Q 045449          358 ETILMANCSISGNIPQVVGNLSNLLVLELGGNNLTGPIPVTFSQLQTLQAFDLTRNKLAGPITDELCHLARLHSLVLQGN  437 (823)
Q Consensus       358 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N  437 (823)
                      +.+++++|.++. +|..+.  ++|+.|+|++|++++..+..|..+++|++|+|++|++++..|..|.++++|++|+|++|
T Consensus        14 ~~v~c~~~~l~~-iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N   90 (220)
T 2v9t_B           14 NIVDCRGKGLTE-IPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN   90 (220)
T ss_dssp             TEEECTTSCCSS-CCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCcCc-CCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence            456666666663 344333  56677777777776555556667777777777777777666666777777777777777


Q ss_pred             cCcccccccccCCCCCCeEeccCCccccccchhhhccCCCcEEeccccccccccCccccCCCCCcEEEcccCCCCCC
Q 045449          438 KFSGSIPSCLGNLTSVRVLYLGLNIFTSVLSSTIWNLKDILFIDVSSNFLDGPLSLDIGNLKVVIGLDFSRNNLSGD  514 (823)
Q Consensus       438 ~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~  514 (823)
                      +|++..+..|..+++|+.|+|++|++++..|..|..+++|+.|+|++|.+++..+..+..++.|+.|++++|.+.+.
T Consensus        91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~  167 (220)
T 2v9t_B           91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICD  167 (220)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred             cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCC
Confidence            77755555566677777777777777776666777777777777777777766666666677777777777776653

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.79  E-value=6.3e-19  Score=179.76  Aligned_cols=137  Identities=20%  Similarity=0.205  Sum_probs=73.4

Q ss_pred             ccccEEEcccCcCCCCchhcccccCCCCEEEccCCCCCCcchHhhhcCCCCCEEEcccCcCcccccccccCCCCCCeEec
Q 045449          379 SNLLVLELGGNNLTGPIPVTFSQLQTLQAFDLTRNKLAGPITDELCHLARLHSLVLQGNKFSGSIPSCLGNLTSVRVLYL  458 (823)
Q Consensus       379 ~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L  458 (823)
                      ++|++|+|++|++++..|..|..+++|++|+|++|+|+...+..|..+++|+.|+|++|+|++..+..|..+++|+.|+|
T Consensus        40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L  119 (229)
T 3e6j_A           40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM  119 (229)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence            44555555555555544555555555555555555554444444455555555555555555444444555555555555


Q ss_pred             cCCccccccchhhhccCCCcEEeccccccccccCccccCCCCCcEEEcccCCCCCCCC
Q 045449          459 GLNIFTSVLSSTIWNLKDILFIDVSSNFLDGPLSLDIGNLKVVIGLDFSRNNLSGDIP  516 (823)
Q Consensus       459 s~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~ip  516 (823)
                      ++|+++ .+|..+..+++|+.|+|++|+|++..+..+..++.|+.|++++|.+++..+
T Consensus       120 s~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  176 (229)
T 3e6j_A          120 CCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR  176 (229)
T ss_dssp             CSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred             cCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence            555555 345555555555555555555555444455555666666666666555443

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.79  E-value=2.7e-19  Score=189.50  Aligned_cols=186  Identities=23%  Similarity=0.291  Sum_probs=119.3

Q ss_pred             EEeeccccccccCccccCCCCCCeEEeecccccccCCCccCCCcccCcccccCccccCCCCcccccccccCCCCceEEEe
Q 045449          258 LNLGINSFSGTIPSSITNSSKLSDLELGENLFSGFIPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIV  337 (823)
Q Consensus       258 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~l~~L~~L~L  337 (823)
                      +.+..+.+++..  .+..+++|+.|++++|.++.. + .+..+++|++|++++|++++..      . +.++++|+.|++
T Consensus        29 ~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~------~-l~~l~~L~~L~l   97 (291)
T 1h6t_A           29 DNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIK------P-LANLKNLGWLFL   97 (291)
T ss_dssp             HHTTCSCTTSEE--CHHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCG------G-GTTCTTCCEEEC
T ss_pred             HHhcCCCccccc--chhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCc------c-cccCCCCCEEEC
Confidence            344444444322  234566777777777777654 2 3556666666666666665541      1 445555555555


Q ss_pred             ecCCCCccCCccccccccccceEEecCCcceeccCccccCcccccEEEcccCcCCCCchhcccccCCCCEEEccCCCCCC
Q 045449          338 TGNPLDGILPKSIGNFSLSLETILMANCSISGNIPQVVGNLSNLLVLELGGNNLTGPIPVTFSQLQTLQAFDLTRNKLAG  417 (823)
Q Consensus       338 s~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~  417 (823)
                      ++|.++                         +.  ..+..+++|++|+|++|++++.  ..+..+++|++|++++|++++
T Consensus        98 ~~n~l~-------------------------~~--~~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~  148 (291)
T 1h6t_A           98 DENKVK-------------------------DL--SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITD  148 (291)
T ss_dssp             CSSCCC-------------------------CG--GGGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCC
T ss_pred             CCCcCC-------------------------CC--hhhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCc
Confidence            555544                         31  1256667777777777777653  346677777777777777775


Q ss_pred             cchHhhhcCCCCCEEEcccCcCcccccccccCCCCCCeEeccCCccccccchhhhccCCCcEEecccccccc
Q 045449          418 PITDELCHLARLHSLVLQGNKFSGSIPSCLGNLTSVRVLYLGLNIFTSVLSSTIWNLKDILFIDVSSNFLDG  489 (823)
Q Consensus       418 ~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g  489 (823)
                      .  ..+..+++|+.|+|++|++++..|  +..+++|+.|+|++|.+++. | .+..+++|+.|++++|.++.
T Consensus       149 ~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          149 I--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             C--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEEC
T ss_pred             c--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCcccC
Confidence            4  456777777777777777776544  77777788888888877774 3 37778888888888887775

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.78  E-value=5.5e-19  Score=193.35  Aligned_cols=176  Identities=20%  Similarity=0.230  Sum_probs=94.2

Q ss_pred             cEEEccCCcccccCCcccccCCCCccEEEeeccccccccCcccc-CCCCCCeEEeecccccccCCCccCCCcccCccccc
Q 045449          231 KEISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSIT-NSSKLSDLELGENLFSGFIPNTIGNLRNLEFGNIA  309 (823)
Q Consensus       231 ~~L~Ls~N~l~g~lp~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~  309 (823)
                      +.+++++|.++ .+|..+.   +.++.|+|++|+|++..+..+. ++++|++|+|++|+|++..+..|..+++|++|+|+
T Consensus        21 ~~l~c~~~~l~-~iP~~~~---~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls   96 (361)
T 2xot_A           21 NILSCSKQQLP-NVPQSLP---SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS   96 (361)
T ss_dssp             TEEECCSSCCS-SCCSSCC---TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CEEEeCCCCcC-ccCccCC---CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence            46677777766 5665442   3456666666666655555555 66666666666666665555555555544444444


Q ss_pred             CccccCCCCcccccccccCCCCceEEEeecCCCCccCCccccccccccceEEecCCcceeccCccccCcccccEEEcccC
Q 045449          310 DNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGILPKSIGNFSLSLETILMANCSISGNIPQVVGNLSNLLVLELGGN  389 (823)
Q Consensus       310 ~N~l~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N  389 (823)
                      +|+++.                             ..+..|..+ .+|++|+|++|+|++..|..|.++++|++|+|++|
T Consensus        97 ~N~l~~-----------------------------~~~~~~~~l-~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N  146 (361)
T 2xot_A           97 SNHLHT-----------------------------LDEFLFSDL-QALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQN  146 (361)
T ss_dssp             SSCCCE-----------------------------ECTTTTTTC-TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CCcCCc-----------------------------CCHHHhCCC-cCCCEEECCCCcccEECHHHhCCcccCCEEECCCC
Confidence            444433                             333333333 34555555555555555555555666666666666


Q ss_pred             cCCCCchhcc---cccCCCCEEEccCCCCCCcchHhhhcCCCC--CEEEcccCcCc
Q 045449          390 NLTGPIPVTF---SQLQTLQAFDLTRNKLAGPITDELCHLARL--HSLVLQGNKFS  440 (823)
Q Consensus       390 ~l~g~~p~~~---~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L--~~L~Ls~N~l~  440 (823)
                      +|++..+..|   ..+++|++|+|++|+|++..+..+..++.+  +.|+|++|.+.
T Consensus       147 ~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          147 QISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             CCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred             cCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence            6664333333   345556666666666655444445554442  44455554443

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.76  E-value=1.2e-19  Score=216.04  Aligned_cols=155  Identities=22%  Similarity=0.260  Sum_probs=104.3

Q ss_pred             hhccccccccCCccccccCCCCCcEEEccCCcccccCCcccccCCCCccEEEeeccccccccCccccCCCCCCeEEeecc
Q 045449          208 RLALATNNLVGVVPVTIFNMSALKEISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSITNSSKLSDLELGEN  287 (823)
Q Consensus       208 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~lp~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N  287 (823)
                      .++++.|.+. ..|..+..++.|+.|+|++|.++ .+|..++. +++|++|+|++|.|+ .+|..|+++++|++|+|++|
T Consensus       205 ~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~-l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N  280 (727)
T 4b8c_D          205 EDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFK-YDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHN  280 (727)
T ss_dssp             ------------------CCCCCCEEECTTSCCS-CCCGGGGG-CCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTS
T ss_pred             Ccccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcC-CCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCC
Confidence            4455556655 56777788888888888888887 78877774 888888888888888 77888888888888888888


Q ss_pred             cccccCCCccCCCcccCcccccCccccCCCCcccccccccCCCCceEEEeecCCCCccCCccccccccccceEEecCCcc
Q 045449          288 LFSGFIPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGILPKSIGNFSLSLETILMANCSI  367 (823)
Q Consensus       288 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l  367 (823)
                      +|+ .+|..|+.+++|++|+|++|.|+.      +|..|.++++|+.|+|++|.|++.+|..+......+..++|++|.+
T Consensus       281 ~l~-~lp~~~~~l~~L~~L~L~~N~l~~------lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l  353 (727)
T 4b8c_D          281 RLT-SLPAELGSCFQLKYFYFFDNMVTT------LPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRP  353 (727)
T ss_dssp             CCS-SCCSSGGGGTTCSEEECCSSCCCC------CCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred             cCC-ccChhhcCCCCCCEEECCCCCCCc------cChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcc
Confidence            888 668888888888888888888764      3445777777888888888887777777665432333455666666


Q ss_pred             eeccCc
Q 045449          368 SGNIPQ  373 (823)
Q Consensus       368 ~~~~p~  373 (823)
                      ++.+|.
T Consensus       354 ~~~~p~  359 (727)
T 4b8c_D          354 EIPLPH  359 (727)
T ss_dssp             CCCCCC
T ss_pred             cCcCcc
Confidence            665554

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.75  E-value=3.7e-18  Score=169.75  Aligned_cols=152  Identities=17%  Similarity=0.183  Sum_probs=68.4

Q ss_pred             CCCCceEEEeecCCCCccCCccccccccccceEEecCCcceeccCccccCcccccEEEcccCcCCCCchhcccccCCCCE
Q 045449          328 NCKKLKVLIVTGNPLDGILPKSIGNFSLSLETILMANCSISGNIPQVVGNLSNLLVLELGGNNLTGPIPVTFSQLQTLQA  407 (823)
Q Consensus       328 ~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~  407 (823)
                      .+++|+.|++++|.++ .+| .+..+ ++|++|++++|.++  .+..+..+++|++|++++|++++..|..+..+++|++
T Consensus        42 ~l~~L~~L~l~~n~i~-~l~-~l~~l-~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~  116 (197)
T 4ezg_A           42 QMNSLTYITLANINVT-DLT-GIEYA-HNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL  116 (197)
T ss_dssp             HHHTCCEEEEESSCCS-CCT-TGGGC-TTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred             hcCCccEEeccCCCcc-ChH-HHhcC-CCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence            3444555555555554 223 33333 34444444444332  1224444555555555555555444444555555555


Q ss_pred             EEccCCCCCCcchHhhhcCCCCCEEEcccCcCcccccccccCCCCCCeEeccCCccccccchhhhccCCCcEEecccccc
Q 045449          408 FDLTRNKLAGPITDELCHLARLHSLVLQGNKFSGSIPSCLGNLTSVRVLYLGLNIFTSVLSSTIWNLKDILFIDVSSNFL  487 (823)
Q Consensus       408 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l  487 (823)
                      |+|++|++++..|..+..+++|++|+|++|.+.+.+| .+..+++|+.|++++|.+++..  .+..+++|+.|++++|++
T Consensus       117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N~i  193 (197)
T 4ezg_A          117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQTI  193 (197)
T ss_dssp             EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECBC--
T ss_pred             EEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEeeCccc
Confidence            5555555554444445555555555555554222333 3444444444444444444421  333444444444444443

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A

Probab=99.75  E-value=1.6e-19  Score=190.84  Aligned_cols=123  Identities=15%  Similarity=0.058  Sum_probs=105.3

Q ss_pred             ccCCccceeeccC------------CeEEEEEEehHhh---HHHHHHHHHHHHHHhhcchhhHHH---------------
Q 045449          628 DRFSENNLIGIGN------------GMEVAVKVFHQQY---ERALKSFEDECEVRKRIRHRNLVK---------------  677 (823)
Q Consensus       628 ~~f~~~~~lg~g~------------~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~---------------  677 (823)
                      ++|...+.||.|+            ++.||||++....   ....+.|.+|++++.+++||||++               
T Consensus        31 ~~y~i~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv~  110 (286)
T 3uqc_A           31 GRYRLLIFHGGVPPLQFWQALDTALDRQVALTFVDPQGVLPDDVLQETLSRTLRLSRIDKPGVARVLDVVHTRAGGLVVA  110 (286)
T ss_dssp             TTEEEEEEEEBSTTCEEEEEEETTTTEEEEEEESCTTCCSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEE
T ss_pred             CcEEEEEEEcccCCeEEEEEEecCCCceEEEEEECcccccCHHHHHHHHHHHHHHhcCCCCCcceeeEEEEECCcEEEEE
Confidence            5688888899885            6779999997543   445678999999999999999998               


Q ss_pred             -----------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccc
Q 045449          678 -----------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQ  734 (823)
Q Consensus       678 -----------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~  734 (823)
                                             ++.|++++|+|+|+.||+||||||+|||++.++.+||+++|                
T Consensus       111 e~~~g~~L~~~l~~~~~~~~~~~i~~ql~~aL~~lH~~givH~Dikp~NIll~~~g~~kl~~~~----------------  174 (286)
T 3uqc_A          111 EWIRGGSLQEVADTSPSPVGAIRAMQSLAAAADAAHRAGVALSIDHPSRVRVSIDGDVVLAYPA----------------  174 (286)
T ss_dssp             ECCCEEEHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCSGGGEEEETTSCEEECSCC----------------
T ss_pred             EecCCCCHHHHHhcCCChHHHHHHHHHHHHHHHHHHHCCCccCCCCcccEEEcCCCCEEEEecc----------------
Confidence                                   46789999999999999999999999999999999988443                


Q ss_pred             cccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCCc
Q 045449          735 TLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGETC  779 (823)
Q Consensus       735 ~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~~  779 (823)
                            |++       .++.++|||||||++|++++|+.||.+..
T Consensus       175 ------~~~-------~~~~~~Di~slG~il~elltg~~Pf~~~~  206 (286)
T 3uqc_A          175 ------TMP-------DANPQDDIRGIGASLYALLVNRWPLPEAG  206 (286)
T ss_dssp             ------CCT-------TCCHHHHHHHHHHHHHHHHHSEECSCCCS
T ss_pred             ------ccC-------CCCchhHHHHHHHHHHHHHHCCCCCCcCC
Confidence                  343       36889999999999999999999997643

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.75  E-value=1.5e-18  Score=180.94  Aligned_cols=171  Identities=20%  Similarity=0.296  Sum_probs=121.4

Q ss_pred             CcchhhhhccccccccCCccccccCCCCCcEEEccCCcccccCCcccccCCCCccEEEeeccccccccCccccCCCCCCe
Q 045449          202 NLPYLARLALATNNLVGVVPVTIFNMSALKEISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSITNSSKLSD  281 (823)
Q Consensus       202 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~lp~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  281 (823)
                      ++.++..++++.|.+++..  .+..+++|++|++++|.++ .+| .+. .+++|++|+|++|++++..+  +.++++|++
T Consensus        17 ~l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~-~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~   89 (263)
T 1xeu_A           17 GLANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQ-FFTNLKELHLSHNQISDLSP--LKDLTKLEE   89 (263)
T ss_dssp             HHHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGG-GCTTCCEEECCSSCCCCCGG--GTTCSSCCE
T ss_pred             HHHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHh-hCCCCCEEECCCCccCCChh--hccCCCCCE
Confidence            4567788889999988654  5778889999999999988 666 444 38889999999998886544  888888888


Q ss_pred             EEeecccccccCCCccCCCcccCcccccCccccCCCCcccccccccCCCCceEEEeecCCCCccCCccccccccccceEE
Q 045449          282 LELGENLFSGFIPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGILPKSIGNFSLSLETIL  361 (823)
Q Consensus       282 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~  361 (823)
                      |+|++|++++.. .. .. ++|+.|+|++|.+++.       ..+..+++|+.|++++|++++. | .+..+ ++|++|+
T Consensus        90 L~L~~N~l~~l~-~~-~~-~~L~~L~L~~N~l~~~-------~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l-~~L~~L~  156 (263)
T 1xeu_A           90 LSVNRNRLKNLN-GI-PS-ACLSRLFLDNNELRDT-------DSLIHLKNLEILSIRNNKLKSI-V-MLGFL-SKLEVLD  156 (263)
T ss_dssp             EECCSSCCSCCT-TC-CC-SSCCEEECCSSCCSBS-------GGGTTCTTCCEEECTTSCCCBC-G-GGGGC-TTCCEEE
T ss_pred             EECCCCccCCcC-cc-cc-CcccEEEccCCccCCC-------hhhcCcccccEEECCCCcCCCC-h-HHccC-CCCCEEE
Confidence            888888888643 22 22 7788888888877764       2466777777777777777654 2 45555 4666666


Q ss_pred             ecCCcceeccCccccCcccccEEEcccCcCCCC
Q 045449          362 MANCSISGNIPQVVGNLSNLLVLELGGNNLTGP  394 (823)
Q Consensus       362 L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~  394 (823)
                      +++|++++.  ..+..+++|+.|++++|.+++.
T Consensus       157 L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          157 LHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             CTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred             CCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence            666666654  4555666666666666666543

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.75  E-value=9.2e-18  Score=166.13  Aligned_cols=131  Identities=21%  Similarity=0.239  Sum_probs=69.4

Q ss_pred             ceEEecCCcceeccCccccCcccccEEEcccCcCCCCchh-cccccCCCCEEEccCCCCCCcchHhhhcCCCCCEEEccc
Q 045449          358 ETILMANCSISGNIPQVVGNLSNLLVLELGGNNLTGPIPV-TFSQLQTLQAFDLTRNKLAGPITDELCHLARLHSLVLQG  436 (823)
Q Consensus       358 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~  436 (823)
                      +++++++|+++ .+|..+..  +|++|+|++|++++..+. .|..+++|++|+|++|+|++..|..|.++++|++|+|++
T Consensus        11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~   87 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence            45555555554 33433322  555555555555544332 255555555555555555555555555555555555555


Q ss_pred             CcCcccccccccCCCCCCeEeccCCccccccchhhhccCCCcEEecccccccccc
Q 045449          437 NKFSGSIPSCLGNLTSVRVLYLGLNIFTSVLSSTIWNLKDILFIDVSSNFLDGPL  491 (823)
Q Consensus       437 N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~~  491 (823)
                      |+|++..|..|.++++|++|+|++|++++.+|..+..+++|++|+|++|.+++..
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c  142 (192)
T 1w8a_A           88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC  142 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSG
T ss_pred             CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcC
Confidence            5555555555555555555555555555555555555555555555555555443

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.74  E-value=6.4e-18  Score=168.06  Aligned_cols=155  Identities=16%  Similarity=0.174  Sum_probs=134.2

Q ss_pred             cccccccceEEecCCcceeccCccccCcccccEEEcccCcCCCCchhcccccCCCCEEEccCCCCCCcchHhhhcCCCCC
Q 045449          351 GNFSLSLETILMANCSISGNIPQVVGNLSNLLVLELGGNNLTGPIPVTFSQLQTLQAFDLTRNKLAGPITDELCHLARLH  430 (823)
Q Consensus       351 ~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~  430 (823)
                      ..+ .+|++|++++|.++ .+| .+..+++|++|++++|.++  .+..+..+++|++|++++|++++..+..+..+++|+
T Consensus        41 ~~l-~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~  115 (197)
T 4ezg_A           41 AQM-NSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT  115 (197)
T ss_dssp             HHH-HTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred             hhc-CCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence            455 68999999999999 555 6889999999999999776  334789999999999999999988888999999999


Q ss_pred             EEEcccCcCcccccccccCCCCCCeEeccCCccccccchhhhccCCCcEEeccccccccccCccccCCCCCcEEEcccCC
Q 045449          431 SLVLQGNKFSGSIPSCLGNLTSVRVLYLGLNIFTSVLSSTIWNLKDILFIDVSSNFLDGPLSLDIGNLKVVIGLDFSRNN  510 (823)
Q Consensus       431 ~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~ls~N~  510 (823)
                      +|+|++|.+++..|..++.+++|+.|+|++|.+.+.+| .+..+++|+.|++++|.+++. + .+..++.|+.|++++|+
T Consensus       116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~N~  192 (197)
T 4ezg_A          116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYAFSQT  192 (197)
T ss_dssp             EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEECBC-
T ss_pred             EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEeeCcc
Confidence            99999999999899999999999999999998334455 689999999999999999874 3 78899999999999999


Q ss_pred             CCC
Q 045449          511 LSG  513 (823)
Q Consensus       511 l~g  513 (823)
                      +.+
T Consensus       193 i~~  195 (197)
T 4ezg_A          193 IGG  195 (197)
T ss_dssp             ---
T ss_pred             cCC
Confidence            863

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.74  E-value=2.4e-18  Score=179.36  Aligned_cols=171  Identities=23%  Similarity=0.276  Sum_probs=99.9

Q ss_pred             CCcccCcccccCccccCCCCcccccccccCCCCceEEEeecCCCCccCCccccccccccceEEecCCcceeccCccccCc
Q 045449          299 NLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGILPKSIGNFSLSLETILMANCSISGNIPQVVGNL  378 (823)
Q Consensus       299 ~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l  378 (823)
                      .+.++..+++++|.++..       ..+..+++|+.|++++|.++. +| .+..+ .+|++|++++|++++..+  +..+
T Consensus        17 ~l~~l~~l~l~~~~i~~~-------~~~~~l~~L~~L~l~~n~i~~-l~-~l~~l-~~L~~L~L~~N~i~~~~~--l~~l   84 (263)
T 1xeu_A           17 GLANAVKQNLGKQSVTDL-------VSQKELSGVQNFNGDNSNIQS-LA-GMQFF-TNLKELHLSHNQISDLSP--LKDL   84 (263)
T ss_dssp             HHHHHHHHHHTCSCTTSE-------ECHHHHTTCSEEECTTSCCCC-CT-TGGGC-TTCCEEECCSSCCCCCGG--GTTC
T ss_pred             HHHHHHHHHhcCCCcccc-------cchhhcCcCcEEECcCCCccc-ch-HHhhC-CCCCEEECCCCccCCChh--hccC
Confidence            455566667777766653       145566666777777776663 23 45555 466666666666665443  6666


Q ss_pred             ccccEEEcccCcCCCCchhcccccCCCCEEEccCCCCCCcchHhhhcCCCCCEEEcccCcCcccccccccCCCCCCeEec
Q 045449          379 SNLLVLELGGNNLTGPIPVTFSQLQTLQAFDLTRNKLAGPITDELCHLARLHSLVLQGNKFSGSIPSCLGNLTSVRVLYL  458 (823)
Q Consensus       379 ~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L  458 (823)
                      ++|++|+|++|++++ +|. +.. ++|++|+|++|++++. + .+..+++|+.|+|++|++++. | .+..+++|+.|+|
T Consensus        85 ~~L~~L~L~~N~l~~-l~~-~~~-~~L~~L~L~~N~l~~~-~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L  157 (263)
T 1xeu_A           85 TKLEELSVNRNRLKN-LNG-IPS-ACLSRLFLDNNELRDT-D-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDL  157 (263)
T ss_dssp             SSCCEEECCSSCCSC-CTT-CCC-SSCCEEECCSSCCSBS-G-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEEC
T ss_pred             CCCCEEECCCCccCC-cCc-ccc-CcccEEEccCCccCCC-h-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEEC
Confidence            666666666666664 332 222 5666666666666643 2 355666666666666666643 2 4555666666666


Q ss_pred             cCCccccccchhhhccCCCcEEeccccccccc
Q 045449          459 GLNIFTSVLSSTIWNLKDILFIDVSSNFLDGP  490 (823)
Q Consensus       459 s~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~  490 (823)
                      ++|++++.  ..+..+++|+.|++++|.+++.
T Consensus       158 ~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          158 HGNEITNT--GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             TTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred             CCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence            66666654  4455556666666666655543

>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*

Probab=99.72  E-value=1.4e-18  Score=184.99  Aligned_cols=122  Identities=25%  Similarity=0.370  Sum_probs=100.0

Q ss_pred             ccCCcc-ceeeccC------------CeEEEEEEehHhhHHHHHHHHHHHHHH-hhcchhhHHH----------------
Q 045449          628 DRFSEN-NLIGIGN------------GMEVAVKVFHQQYERALKSFEDECEVR-KRIRHRNLVK----------------  677 (823)
Q Consensus       628 ~~f~~~-~~lg~g~------------~~~vavK~~~~~~~~~~~~~~~E~~~l-~~l~h~niv~----------------  677 (823)
                      ++|... +.||.|+            +..||||++...     ..+.+|++++ +..+||||++                
T Consensus        17 ~~y~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~-----~~~~~e~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~   91 (299)
T 3m2w_A           17 DDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDC-----PKARREVELHWRASQCPHIVRIVDVYENLYAGRKCLL   91 (299)
T ss_dssp             GTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECS-----HHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEE
T ss_pred             cchhhcCcccccCCCeEEEEEEEcCCCcEEEEEEeccc-----HHHHHHHHHHHHhccCCCchhHHhhhhhhcCCCceEE
Confidence            445554 6788875            567999999643     4567888887 5558999997                


Q ss_pred             ------------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCC---CCcEEEeecccccccC
Q 045449          678 ------------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDE---DMVAHISDFGIAKLLS  724 (823)
Q Consensus       678 ------------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~---~~~~kl~DfGla~~~~  724 (823)
                                                    ++.|++.+|+|+|+.+|+||||||+||+++.   ++.+||+|||+++...
T Consensus        92 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~  171 (299)
T 3m2w_A           92 IVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHSINIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETT  171 (299)
T ss_dssp             EEECCCCSCBHHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEESSSSTTCCEEECCCTTCEECT
T ss_pred             EEEeecCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEEecCCCCCcEEEeccccccccc
Confidence                                          3678899999999999999999999999997   7899999999987532


Q ss_pred             CCCccccccccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCC
Q 045449          725 GEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       725 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                                              +..++.++||||+||++|++.+|..||...
T Consensus       172 ------------------------~~~~~~~~DiwslG~il~el~tg~~pf~~~  201 (299)
T 3m2w_A          172 ------------------------GEKYDKSCDMWSLGVIMYILLCGYPPFYSN  201 (299)
T ss_dssp             ------------------------TCGGGGHHHHHHHHHHHHHHHHSSCSCCC-
T ss_pred             ------------------------cccCCchhhHHHHHHHHHHHHHCCCCCCCC
Confidence                                    245788999999999999999999999654

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.70  E-value=4.2e-17  Score=161.35  Aligned_cols=132  Identities=18%  Similarity=0.284  Sum_probs=69.4

Q ss_pred             cEEEcccCcCCCCchhcccccCCCCEEEccCCCCCCcchH-hhhcCCCCCEEEcccCcCcccccccccCCCCCCeEeccC
Q 045449          382 LVLELGGNNLTGPIPVTFSQLQTLQAFDLTRNKLAGPITD-ELCHLARLHSLVLQGNKFSGSIPSCLGNLTSVRVLYLGL  460 (823)
Q Consensus       382 ~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~  460 (823)
                      +++++++|+++ .+|..+..  +|++|+|++|+|++..+. .|..+++|++|+|++|+|++..|..|.++++|++|+|++
T Consensus        11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~   87 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence            45555555553 34443322  455555555555544432 245555555555555555555555555555555555555


Q ss_pred             CccccccchhhhccCCCcEEeccccccccccCccccCCCCCcEEEcccCCCCCCCC
Q 045449          461 NIFTSVLSSTIWNLKDILFIDVSSNFLDGPLSLDIGNLKVVIGLDFSRNNLSGDIP  516 (823)
Q Consensus       461 N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~ip  516 (823)
                      |++++..+..+..+++|++|+|++|++++.+|..+..++.|++|++++|+++|.++
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  143 (192)
T 1w8a_A           88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred             CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence            55555555555555555555555555555555555555555555555555554443

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.69  E-value=9.7e-18  Score=181.05  Aligned_cols=102  Identities=11%  Similarity=0.045  Sum_probs=72.9

Q ss_pred             cCCCCEEEccCCCCCCcchHhhhcCCCCCEEEcccCcCcccccccccCCCCCC-eEeccCCccccccchhhhccCCCcEE
Q 045449          402 LQTLQAFDLTRNKLAGPITDELCHLARLHSLVLQGNKFSGSIPSCLGNLTSVR-VLYLGLNIFTSVLSSTIWNLKDILFI  480 (823)
Q Consensus       402 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~-~L~Ls~N~l~~~~p~~~~~l~~L~~L  480 (823)
                      +++|+.|+|++|+++...+..|.++.+|+.|+|++| ++...+.+|.++++|+ .+++.+ .++.+.+..|.++++|+.+
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l  302 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV  302 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence            567777777777777555556777777777777776 6655556677777777 777776 6666666777777777777


Q ss_pred             eccccccccccCccccCCCCCcEEE
Q 045449          481 DVSSNFLDGPLSLDIGNLKVVIGLD  505 (823)
Q Consensus       481 dLs~N~l~g~~p~~~~~l~~L~~L~  505 (823)
                      ++++|.++..-+..|.++++|+.++
T Consensus       303 ~l~~n~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          303 LATGDKITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             EECSSCCCEECTTTTCTTCCCCEEE
T ss_pred             EeCCCccCccchhhhcCCcchhhhc
Confidence            7777777766666777777777765

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.69  E-value=1.4e-16  Score=153.94  Aligned_cols=132  Identities=22%  Similarity=0.271  Sum_probs=91.2

Q ss_pred             cccceEEecCCcce-eccCccccCcccccEEEcccCcCCCCchhcccccCCCCEEEccCCCCCCcchHhhhcCCCCCEEE
Q 045449          355 LSLETILMANCSIS-GNIPQVVGNLSNLLVLELGGNNLTGPIPVTFSQLQTLQAFDLTRNKLAGPITDELCHLARLHSLV  433 (823)
Q Consensus       355 ~~L~~L~L~~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  433 (823)
                      .+|++|++++|.++ +.+|..+..+++|++|++++|.+++.  ..+..+++|++|+|++|++++.+|..+..+++|++|+
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  101 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN  101 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence            45666667666666 56666667777777777777777754  5677777777777777777766676666677777777


Q ss_pred             cccCcCcccc-cccccCCCCCCeEeccCCccccccc---hhhhccCCCcEEeccccccc
Q 045449          434 LQGNKFSGSI-PSCLGNLTSVRVLYLGLNIFTSVLS---STIWNLKDILFIDVSSNFLD  488 (823)
Q Consensus       434 Ls~N~l~g~~-p~~~~~l~~L~~L~Ls~N~l~~~~p---~~~~~l~~L~~LdLs~N~l~  488 (823)
                      |++|.+++.. +..+..+++|+.|++++|.+++..+   ..+..+++|++||+++|.+.
T Consensus       102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A          102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred             ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence            7777777532 2566677777777777777776554   45666667777777666654

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.68  E-value=3.8e-17  Score=176.38  Aligned_cols=266  Identities=14%  Similarity=0.085  Sum_probs=185.1

Q ss_pred             cchhhhhcccccccc--CCccccccCCCCCcEEEccCCcccccCCcccccC--------CCCccEEEeeccccccccCcc
Q 045449          203 LPYLARLALATNNLV--GVVPVTIFNMSALKEISLLNNSLSGSLPSRIDLS--------LPNVETLNLGINSFSGTIPSS  272 (823)
Q Consensus       203 l~~L~~L~Ls~N~l~--~~~p~~~~~l~~L~~L~Ls~N~l~g~lp~~~~~~--------l~~L~~L~Ls~N~l~~~~p~~  272 (823)
                      +++|+.|||++|++.  ...+..+   +.+..+.+..|    .+|...|.+        +++|+.|+|.. +++.+-+.+
T Consensus        48 l~~L~~LdLs~n~i~~~~~~~~~~---~~~~~~~~~~~----~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~a  119 (329)
T 3sb4_A           48 FPSLKVLDISNAEIKMYSGKAGTY---PNGKFYIYMAN----FVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAA  119 (329)
T ss_dssp             CTTCCEEEEEEEEECCEEESSSSS---GGGCCEEECTT----EECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTT
T ss_pred             hccCeEEecCcceeEEecCccccc---ccccccccccc----ccCHHHhcccccccccccCCCcEEECCc-cccchhHHH
Confidence            678999999999998  3332222   23556666666    456667777        99999999999 888777888


Q ss_pred             ccCCCCCCeEEeecccccccCCCccCCCcccCcccccCccccCCCCcccccccccCCCCce-EEEeecCCCCccCCcccc
Q 045449          273 ITNSSKLSDLELGENLFSGFIPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLK-VLIVTGNPLDGILPKSIG  351 (823)
Q Consensus       273 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~l~~L~-~L~Ls~N~l~~~~p~~~~  351 (823)
                      |.++++|+.|++++|.+..+.+.+|..+.++..+.+..+........+ ....|.++..|+ .+.+....   .++..+.
T Consensus       120 F~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i-~~~~f~~~~~L~~~i~~~~~~---~l~~~~~  195 (329)
T 3sb4_A          120 FKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRW-EHFAFIEGEPLETTIQVGAMG---KLEDEIM  195 (329)
T ss_dssp             TTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTT-TTSCEEESCCCEEEEEECTTC---CHHHHHH
T ss_pred             hhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccc-cccccccccccceeEEecCCC---cHHHHHh
Confidence            999999999999999999888999999888888877664321100000 123466777777 45554321   2222221


Q ss_pred             c---cccccceEEecCCcceeccCccccCcccccEEEcccCcCCCCchhcccccCCCCEEEccCCCCCCcchHhhhcCCC
Q 045449          352 N---FSLSLETILMANCSISGNIPQVVGNLSNLLVLELGGNNLTGPIPVTFSQLQTLQAFDLTRNKLAGPITDELCHLAR  428 (823)
Q Consensus       352 ~---~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  428 (823)
                      .   .+.++..+.+.++-...........+++|+.|+|++|+++...+..|.++.+|+.|+|++| ++...+..|.++.+
T Consensus       196 ~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~  274 (329)
T 3sb4_A          196 KAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGR  274 (329)
T ss_dssp             HTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTT
T ss_pred             hcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChh
Confidence            1   1245555655544221111111123678888888888888555667888888888888887 77666677888888


Q ss_pred             CC-EEEcccCcCcccccccccCCCCCCeEeccCCccccccchhhhccCCCcEEec
Q 045449          429 LH-SLVLQGNKFSGSIPSCLGNLTSVRVLYLGLNIFTSVLSSTIWNLKDILFIDV  482 (823)
Q Consensus       429 L~-~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdL  482 (823)
                      |+ .+++.+ .++...+.+|.++++|+.++++.|.++.+.+..|.++++|+.+..
T Consensus       275 L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          275 LAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             CCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             ccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence            88 888887 777666788888888888888888888888888888888887753

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.68  E-value=1.3e-16  Score=150.79  Aligned_cols=127  Identities=19%  Similarity=0.242  Sum_probs=95.0

Q ss_pred             cccceEEecCCcce-eccCccccCcccccEEEcccCcCCCCchhcccccCCCCEEEccCCCCCCcchHhhhcCCCCCEEE
Q 045449          355 LSLETILMANCSIS-GNIPQVVGNLSNLLVLELGGNNLTGPIPVTFSQLQTLQAFDLTRNKLAGPITDELCHLARLHSLV  433 (823)
Q Consensus       355 ~~L~~L~L~~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  433 (823)
                      .++++|++++|.++ +.+|..+..+++|++|++++|++++.  ..+..+++|++|+|++|++++.+|..+..+++|++|+
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   94 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN   94 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence            56777777777777 66777777778888888888888755  5677778888888888888876777777778888888


Q ss_pred             cccCcCccc-ccccccCCCCCCeEeccCCccccccc---hhhhccCCCcEEecc
Q 045449          434 LQGNKFSGS-IPSCLGNLTSVRVLYLGLNIFTSVLS---STIWNLKDILFIDVS  483 (823)
Q Consensus       434 Ls~N~l~g~-~p~~~~~l~~L~~L~Ls~N~l~~~~p---~~~~~l~~L~~LdLs  483 (823)
                      +++|.+++. .|..+..+++|+.|++++|.+++..+   ..+..+++|+.||++
T Consensus        95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            888887763 34667777777777777777777655   467777777777765

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.68  E-value=8e-17  Score=155.65  Aligned_cols=134  Identities=17%  Similarity=0.113  Sum_probs=123.2

Q ss_pred             CcccccEEEcccCcCC-CCchhcccccCCCCEEEccCCCCCCcchHhhhcCCCCCEEEcccCcCcccccccccCCCCCCe
Q 045449          377 NLSNLLVLELGGNNLT-GPIPVTFSQLQTLQAFDLTRNKLAGPITDELCHLARLHSLVLQGNKFSGSIPSCLGNLTSVRV  455 (823)
Q Consensus       377 ~l~~L~~L~Ls~N~l~-g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~  455 (823)
                      ..++|++|++++|+++ +.+|..+..+++|++|+|++|.+++.  ..+..+++|++|+|++|.+++.+|..+..+++|++
T Consensus        22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~   99 (168)
T 2ell_A           22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH   99 (168)
T ss_dssp             CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred             CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence            3478999999999998 78899899999999999999999976  77899999999999999999889999989999999


Q ss_pred             EeccCCcccccc-chhhhccCCCcEEeccccccccccC---ccccCCCCCcEEEcccCCCC
Q 045449          456 LYLGLNIFTSVL-SSTIWNLKDILFIDVSSNFLDGPLS---LDIGNLKVVIGLDFSRNNLS  512 (823)
Q Consensus       456 L~Ls~N~l~~~~-p~~~~~l~~L~~LdLs~N~l~g~~p---~~~~~l~~L~~L~ls~N~l~  512 (823)
                      |+|++|.+++.. +..+..+++|+.|++++|.+++..+   ..+..++.|++||+++|.+.
T Consensus       100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A          100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred             EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence            999999999853 3789999999999999999997766   57899999999999999987

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.67  E-value=9.3e-17  Score=151.84  Aligned_cols=130  Identities=17%  Similarity=0.133  Sum_probs=119.2

Q ss_pred             CcccccEEEcccCcCC-CCchhcccccCCCCEEEccCCCCCCcchHhhhcCCCCCEEEcccCcCcccccccccCCCCCCe
Q 045449          377 NLSNLLVLELGGNNLT-GPIPVTFSQLQTLQAFDLTRNKLAGPITDELCHLARLHSLVLQGNKFSGSIPSCLGNLTSVRV  455 (823)
Q Consensus       377 ~l~~L~~L~Ls~N~l~-g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~  455 (823)
                      ..++|+.|++++|+++ +.+|..+..+++|++|++++|++++.  ..+..+++|++|+|++|.+++.+|..+..+++|++
T Consensus        15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~   92 (149)
T 2je0_A           15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH   92 (149)
T ss_dssp             CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred             CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence            3578999999999998 78999999999999999999999976  77899999999999999999889999999999999


Q ss_pred             EeccCCccccc-cchhhhccCCCcEEeccccccccccC---ccccCCCCCcEEEccc
Q 045449          456 LYLGLNIFTSV-LSSTIWNLKDILFIDVSSNFLDGPLS---LDIGNLKVVIGLDFSR  508 (823)
Q Consensus       456 L~Ls~N~l~~~-~p~~~~~l~~L~~LdLs~N~l~g~~p---~~~~~l~~L~~L~ls~  508 (823)
                      |++++|.+++. .+..+..+++|++|++++|.+++..+   ..+..++.|+.||+++
T Consensus        93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            99999999985 45889999999999999999998776   5789999999999874

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.65  E-value=5.8e-16  Score=153.14  Aligned_cols=129  Identities=19%  Similarity=0.253  Sum_probs=74.2

Q ss_pred             cEEEcccCcCCCCchhcccccCCCCEEEccCCCCCCcchHhhhcCCCCCEEEcccCcCcccccccccCCCCCCeEeccCC
Q 045449          382 LVLELGGNNLTGPIPVTFSQLQTLQAFDLTRNKLAGPITDELCHLARLHSLVLQGNKFSGSIPSCLGNLTSVRVLYLGLN  461 (823)
Q Consensus       382 ~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N  461 (823)
                      +++++++|+++ .+|..+.  ++|++|+|++|+|+ .+|..|.++++|+.|+|++|.|++..|..|.++++|++|+|++|
T Consensus        13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N   88 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN   88 (193)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence            34555555555 3443332  35555566666555 44455555566666666666666555555666666666666666


Q ss_pred             ccccccchhhhccCCCcEEeccccccccccCccccCCCCCcEEEcccCCCCCC
Q 045449          462 IFTSVLSSTIWNLKDILFIDVSSNFLDGPLSLDIGNLKVVIGLDFSRNNLSGD  514 (823)
Q Consensus       462 ~l~~~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~  514 (823)
                      ++++..|..|..+++|+.|+|++|.|++..+..+..++.|+.|++++|.+.+.
T Consensus        89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~  141 (193)
T 2wfh_A           89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCD  141 (193)
T ss_dssp             CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred             ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecC
Confidence            66665555566666666666666666654444566666666666666666543

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.65  E-value=5.4e-16  Score=151.23  Aligned_cols=133  Identities=19%  Similarity=0.210  Sum_probs=80.6

Q ss_pred             ccEEEcccCcCCCCchhcccccCCCCEEEccCCCCCCcchHhhhcCCCCCEEEcccCcCcccccccccCCCCCCeEeccC
Q 045449          381 LLVLELGGNNLTGPIPVTFSQLQTLQAFDLTRNKLAGPITDELCHLARLHSLVLQGNKFSGSIPSCLGNLTSVRVLYLGL  460 (823)
Q Consensus       381 L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~  460 (823)
                      .+.+++++|+++ .+|..+  .++|++|++++|++++..+..|..+++|++|+|++|++++..+..|..+++|+.|+|++
T Consensus         9 ~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   85 (177)
T 2o6r_A            9 GTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE   85 (177)
T ss_dssp             TTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence            345555555555 333322  24566666666666655555556666666666666666655555556666666666666


Q ss_pred             CccccccchhhhccCCCcEEeccccccccccCccccCCCCCcEEEcccCCCCCCCC
Q 045449          461 NIFTSVLSSTIWNLKDILFIDVSSNFLDGPLSLDIGNLKVVIGLDFSRNNLSGDIP  516 (823)
Q Consensus       461 N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~ip  516 (823)
                      |++++..+..+..+++|++|++++|.+++..+..+..++.|+.|++++|+++|.+|
T Consensus        86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A           86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            66666555556666666666666666665544455666777777777777776554

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.64  E-value=7.8e-16  Score=152.22  Aligned_cols=129  Identities=22%  Similarity=0.330  Sum_probs=87.5

Q ss_pred             ceEEecCCcceeccCccccCcccccEEEcccCcCCCCchhcccccCCCCEEEccCCCCCCcchHhhhcCCCCCEEEcccC
Q 045449          358 ETILMANCSISGNIPQVVGNLSNLLVLELGGNNLTGPIPVTFSQLQTLQAFDLTRNKLAGPITDELCHLARLHSLVLQGN  437 (823)
Q Consensus       358 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N  437 (823)
                      +++++++|.++ .+|..+.  ++|++|+|++|+++ .+|..|..+++|++|+|++|+|++..+..|.++++|++|+|++|
T Consensus        13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N   88 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN   88 (193)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence            34455555554 2333322  45667777777776 55666777777777777777777666666777777777777777


Q ss_pred             cCcccccccccCCCCCCeEeccCCccccccchhhhccCCCcEEeccccccccc
Q 045449          438 KFSGSIPSCLGNLTSVRVLYLGLNIFTSVLSSTIWNLKDILFIDVSSNFLDGP  490 (823)
Q Consensus       438 ~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~  490 (823)
                      +|++..|..|..+++|+.|+|++|++++..+..|..+++|+.|+|++|.+.+.
T Consensus        89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~  141 (193)
T 2wfh_A           89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCD  141 (193)
T ss_dssp             CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred             ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecC
Confidence            77766666777777777777777777776666677777777777777777653

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.63  E-value=1.2e-15  Score=148.61  Aligned_cols=114  Identities=25%  Similarity=0.246  Sum_probs=66.9

Q ss_pred             ccccEEEcccCcCCCCchhcccccCCCCEEEccCCCCCCcchHhhhcCCCCCEEEcccCcCcccccccccCCCCCCeEec
Q 045449          379 SNLLVLELGGNNLTGPIPVTFSQLQTLQAFDLTRNKLAGPITDELCHLARLHSLVLQGNKFSGSIPSCLGNLTSVRVLYL  458 (823)
Q Consensus       379 ~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L  458 (823)
                      ++|++|++++|++++..+..|..+++|++|+|++|++++..+..|..+++|++|+|++|++++..+..+..+++|+.|+|
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l  107 (177)
T 2o6r_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL  107 (177)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence            45555555555555444444555556666666666665554445555666666666666666555555566666666666


Q ss_pred             cCCccccccchhhhccCCCcEEeccccccccccC
Q 045449          459 GLNIFTSVLSSTIWNLKDILFIDVSSNFLDGPLS  492 (823)
Q Consensus       459 s~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~~p  492 (823)
                      ++|.+++..+..+..+++|+.|++++|.+++..|
T Consensus       108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A          108 DTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             CSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             cCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            6666665555455566666666666666665444

>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*

Probab=99.63  E-value=5e-17  Score=186.63  Aligned_cols=136  Identities=19%  Similarity=0.139  Sum_probs=100.1

Q ss_pred             CccceeeccC----------CeEEEEEEehHh--------hHHHHHHHHHHHHHHhhcchhhHHH---------------
Q 045449          631 SENNLIGIGN----------GMEVAVKVFHQQ--------YERALKSFEDECEVRKRIRHRNLVK---------------  677 (823)
Q Consensus       631 ~~~~~lg~g~----------~~~vavK~~~~~--------~~~~~~~~~~E~~~l~~l~h~niv~---------------  677 (823)
                      ...+.||+|+          +..+|+|+....        .....++|.+|++++++++||||++               
T Consensus       339 ~~~~~LG~G~fg~Vy~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~~~~~~~~~~~~~lVm  418 (540)
T 3en9_A          339 IPEHLIGKGAEADIKRDSYLDFDVIIKERVKKGYRDERLDENIRKSRTAREARYLALVKDFGIPAPYIFDVDLDNKRIMM  418 (540)
T ss_dssp             ---------CCEEEEEEECSSCEEEEEEECCCTTSCHHHHHHHHHHHHHHHHHHHHHGGGGTCCCCCEEEEETTTTEEEE
T ss_pred             CCCCEEeeCCCEEEEEEEECCCeEEEEEEecccccchhhhhHHHHHHHHHHHHHHHhcCCCCcCceEEEEEeCCccEEEE
Confidence            3456788876          455788875321        1223467999999999999999993               


Q ss_pred             -----------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccc-----ccccc
Q 045449          678 -----------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLS-----KQTQT  735 (823)
Q Consensus       678 -----------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~-----~~~~~  735 (823)
                                       ++.|++++|+|+|+.+|+||||||+|||++.  .+||+|||+|+.........     .....
T Consensus       419 E~~~ggsL~~~l~~~~~i~~qi~~aL~~LH~~gIiHrDiKp~NILl~~--~~kL~DFGla~~~~~~~~~~~~~~~~~~~~  496 (540)
T 3en9_A          419 SYINGKLAKDVIEDNLDIAYKIGEIVGKLHKNDVIHNDLTTSNFIFDK--DLYIIDFGLGKISNLDEDKAVDLIVFKKAV  496 (540)
T ss_dssp             ECCCSEEHHHHSTTCTHHHHHHHHHHHHHHHTTEECTTCCTTSEEESS--SEEECCCTTCEECCCHHHHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCcCccCCCCHHHEEECC--eEEEEECccCEECCCccccccchhhhhhhh
Confidence                             4688999999999999999999999999998  99999999999875432211     12356


Q ss_pred             ccCCCcCcccccCC--Cccccccceehhhhhhccc
Q 045449          736 LATIGYMAPEYGTK--GRVSTRGDVCSFGIISGGK  768 (823)
Q Consensus       736 ~gt~~y~aPE~~~~--~~~~~~~Dv~S~Gvv~~~~  768 (823)
                      +||+.|||||++..  ..|+..+|+||..+-..+.
T Consensus       497 ~GT~~y~APEv~~~~~~~Y~~~~d~ws~vl~~l~~  531 (540)
T 3en9_A          497 LSTHHEKFDEIWERFLEGYKSVYDRWEIILELMKD  531 (540)
T ss_dssp             HHHCGGGHHHHHHHHHHHHHHHCTTHHHHHHHHHH
T ss_pred             cCCCCcCCHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            89999999999876  6688899999987654433

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.60  E-value=1.1e-14  Score=160.71  Aligned_cols=252  Identities=12%  Similarity=0.110  Sum_probs=144.5

Q ss_pred             ccCCccccccCCCCCcEEEccCCcccccCCcccccCCCCccEEEeeccccccccCccccCCCCCCeEEeecccccccCCC
Q 045449          216 LVGVVPVTIFNMSALKEISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSITNSSKLSDLELGENLFSGFIPN  295 (823)
Q Consensus       216 l~~~~p~~~~~l~~L~~L~Ls~N~l~g~lp~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~  295 (823)
                      ++.+...+|.+. +|+.+.+..| ++ .++...|.+ .+|+.+++.. .++.+-+.+|.++++|+.++|++|+++.+...
T Consensus       124 i~~I~~~aF~~~-~L~~i~l~~~-i~-~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~  198 (401)
T 4fdw_A          124 VKSIPKDAFRNS-QIAKVVLNEG-LK-SIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPAS  198 (401)
T ss_dssp             CCEECTTTTTTC-CCSEEECCTT-CC-EECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTT
T ss_pred             cCEehHhhcccC-CccEEEeCCC-cc-EECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechh
Confidence            343444555553 5667776655 44 555555553 3577777764 55555556677777777777777777666555


Q ss_pred             ccCCCcccCcccccCccccCCCCcccccccccCCCCceEEEeecCCCCccCCccccccccccceEEecCCcceeccCccc
Q 045449          296 TIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGILPKSIGNFSLSLETILMANCSISGNIPQVV  375 (823)
Q Consensus       296 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~p~~~  375 (823)
                      +|. .++|+.+.|..+ ++.+     ...+|.+|++|+.+++..| ++.+-...|.+  .+|+.+.+ .+.++...+.+|
T Consensus       199 aF~-~~~L~~l~lp~~-l~~I-----~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~--~~L~~i~l-p~~i~~I~~~aF  267 (401)
T 4fdw_A          199 TFV-YAGIEEVLLPVT-LKEI-----GSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE--SGITTVKL-PNGVTNIASRAF  267 (401)
T ss_dssp             TTT-TCCCSEEECCTT-CCEE-----CTTTTTTCTTCCCEECCTT-CCEECTTTTTT--CCCSEEEE-ETTCCEECTTTT
T ss_pred             hEe-ecccCEEEeCCc-hhee-----hhhHhhCCCCCCEEecCCC-ccCcccccccc--CCccEEEe-CCCccEEChhHh
Confidence            565 466777666633 4433     2345666677777776654 44444445544  36777777 344555566677


Q ss_pred             cCcccccEEEcccCcCC-----CCchhcccccCCCCEEEccCCCCCCcchHhhhcCCCCCEEEcccCcCcccccccccCC
Q 045449          376 GNLSNLLVLELGGNNLT-----GPIPVTFSQLQTLQAFDLTRNKLAGPITDELCHLARLHSLVLQGNKFSGSIPSCLGNL  450 (823)
Q Consensus       376 ~~l~~L~~L~Ls~N~l~-----g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l  450 (823)
                      .++++|+.+++.+|.+.     ...+..|.++++|+.++|. |.++......|.++++|+.++|..| ++..-+.+|.++
T Consensus       268 ~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~  345 (401)
T 4fdw_A          268 YYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT  345 (401)
T ss_dssp             TTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS
T ss_pred             hCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC
Confidence            77777777777776654     2233456666666666666 3355444455666666666666433 444444555555


Q ss_pred             CCCCeEeccCCccccccchhhhccC-CCcEEeccccc
Q 045449          451 TSVRVLYLGLNIFTSVLSSTIWNLK-DILFIDVSSNF  486 (823)
Q Consensus       451 ~~L~~L~Ls~N~l~~~~p~~~~~l~-~L~~LdLs~N~  486 (823)
                       +|+.+++++|.+....+..|.+++ .++.|.+..|.
T Consensus       346 -~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~  381 (401)
T 4fdw_A          346 -GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAES  381 (401)
T ss_dssp             -CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred             -CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHH
Confidence             566666666655554444444442 34444444443

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.58  E-value=2.8e-17  Score=163.56  Aligned_cols=135  Identities=20%  Similarity=0.272  Sum_probs=64.3

Q ss_pred             ccCCCCceEEEeecCCCCccCCc------cccccccccceEEecCCcceeccCccccCcccccEEEcccCcCCCCchhcc
Q 045449          326 LTNCKKLKVLIVTGNPLDGILPK------SIGNFSLSLETILMANCSISGNIPQVVGNLSNLLVLELGGNNLTGPIPVTF  399 (823)
Q Consensus       326 l~~l~~L~~L~Ls~N~l~~~~p~------~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~  399 (823)
                      +.....++.++++.+.++|.+|.      .+..+ ++|++|++++|.+++ +| .+..+++|++|++++|+++ .+|..+
T Consensus        14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l-~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~   89 (198)
T 1ds9_A           14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTL-KACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLD   89 (198)
T ss_dssp             HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHT-TTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHH
T ss_pred             HHhcccccCcchheeEeccccCcHhhhhHHHhcC-CCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchh
Confidence            33445555666666666665554      44444 345555555555544 33 4444555555555555554 344444


Q ss_pred             cccCCCCEEEccCCCCCCcchHhhhcCCCCCEEEcccCcCccccc-ccccCCCCCCeEeccCCccccc
Q 045449          400 SQLQTLQAFDLTRNKLAGPITDELCHLARLHSLVLQGNKFSGSIP-SCLGNLTSVRVLYLGLNIFTSV  466 (823)
Q Consensus       400 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p-~~~~~l~~L~~L~Ls~N~l~~~  466 (823)
                      ..+++|++|+|++|++++ +| .+..+++|+.|+|++|++++..+ ..+..+++|+.|++++|.+++.
T Consensus        90 ~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~  155 (198)
T 1ds9_A           90 AVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND  155 (198)
T ss_dssp             HHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHH
T ss_pred             hcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccc
Confidence            444445555555555543 22 34444444444444444443211 2344444444444444444443

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.58  E-value=5.5e-17  Score=161.43  Aligned_cols=142  Identities=18%  Similarity=0.259  Sum_probs=83.0

Q ss_pred             CCCcccCcccccCccccCCCCcc-cccccccCCCCceEEEeecCCCCccCCccccccccccceEEecCCcceeccCcccc
Q 045449          298 GNLRNLEFGNIADNYLTSSTPEL-SFLSSLTNCKKLKVLIVTGNPLDGILPKSIGNFSLSLETILMANCSISGNIPQVVG  376 (823)
Q Consensus       298 ~~l~~L~~L~L~~N~l~~~~~~~-~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~p~~~~  376 (823)
                      .....++.++++.+.+++..+.+ .++..+..+++|++|++++|.+++ +| .+..+ ++|++|++++|.++ .+|..+.
T Consensus        15 ~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l-~~L~~L~l~~n~l~-~l~~~~~   90 (198)
T 1ds9_A           15 EERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGM-ENLRILSLGRNLIK-KIENLDA   90 (198)
T ss_dssp             HHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHH-TTCCEEEEEEEEEC-SCSSHHH
T ss_pred             HhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccC-CCCCEEECCCCCcc-cccchhh
Confidence            33455666666666666553321 122255666666666666666665 44 55555 56666666666666 4555555


Q ss_pred             CcccccEEEcccCcCCCCchhcccccCCCCEEEccCCCCCCcch-HhhhcCCCCCEEEcccCcCcccccc
Q 045449          377 NLSNLLVLELGGNNLTGPIPVTFSQLQTLQAFDLTRNKLAGPIT-DELCHLARLHSLVLQGNKFSGSIPS  445 (823)
Q Consensus       377 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~g~~p~  445 (823)
                      .+++|++|+|++|++++ +| .+..+++|++|+|++|++++..+ ..+..+++|++|++++|.+++.+|.
T Consensus        91 ~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~  158 (198)
T 1ds9_A           91 VADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKE  158 (198)
T ss_dssp             HHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHT
T ss_pred             cCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccccccc
Confidence            56666666666666664 34 45666666666666666664322 3456666666666666666655543

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.56  E-value=7.6e-15  Score=142.86  Aligned_cols=105  Identities=18%  Similarity=0.233  Sum_probs=51.3

Q ss_pred             cccEEEcccCcCCCCchhcccccCCCCEEEccCCCCCCcchHhhhcCCCCCEEEcccCcCcccccc--cccCCCCCCeEe
Q 045449          380 NLLVLELGGNNLTGPIPVTFSQLQTLQAFDLTRNKLAGPITDELCHLARLHSLVLQGNKFSGSIPS--CLGNLTSVRVLY  457 (823)
Q Consensus       380 ~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~--~~~~l~~L~~L~  457 (823)
                      +|++|+|++|++++.  ..|..+++|++|+|++|+|++..+..|..+++|++|+|++|+++ .+|.  .+..+++|+.|+
T Consensus        43 ~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~  119 (176)
T 1a9n_A           43 QFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLC  119 (176)
T ss_dssp             CCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEE
T ss_pred             CCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEE
Confidence            444444444444432  33444455555555555554333333345555555555555553 2333  445555555555


Q ss_pred             ccCCccccccch----hhhccCCCcEEeccccccc
Q 045449          458 LGLNIFTSVLSS----TIWNLKDILFIDVSSNFLD  488 (823)
Q Consensus       458 Ls~N~l~~~~p~----~~~~l~~L~~LdLs~N~l~  488 (823)
                      +++|.++.. |.    .++.+++|+.||+++|.+.
T Consensus       120 l~~N~i~~~-~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A          120 ILRNPVTNK-KHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             CCSSGGGGS-TTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             ecCCCCCCc-HhHHHHHHHHCCccceeCCCcCCHH
Confidence            555555432 32    2555555666666555544

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.56  E-value=5.5e-14  Score=155.09  Aligned_cols=263  Identities=14%  Similarity=0.095  Sum_probs=160.2

Q ss_pred             CCCcEEEccCCcccccCCcccccCCCCccEEEeeccccccccCccccCCCCCCeEEeecccccccCCCccCCCcccCccc
Q 045449          228 SALKEISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSITNSSKLSDLELGENLFSGFIPNTIGNLRNLEFGN  307 (823)
Q Consensus       228 ~~L~~L~Ls~N~l~g~lp~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  307 (823)
                      ..++.+.+.+ .++ .|+...|.+ .+|+.++|..| ++.+-..+|.++ +|+.+++.. .++.+.+.+|.++++|+.++
T Consensus       113 ~~l~~i~ip~-~i~-~I~~~aF~~-~~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~  186 (401)
T 4fdw_A          113 KGYNEIILPN-SVK-SIPKDAFRN-SQIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKAD  186 (401)
T ss_dssp             SSCSEEECCT-TCC-EECTTTTTT-CCCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEE
T ss_pred             CCccEEEECC-ccC-EehHhhccc-CCccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeee
Confidence            4566666654 344 566666654 36888888765 665666667774 688888875 66666667777777777777


Q ss_pred             ccCccccCCCCcccccccccCCCCceEEEeecCCCCccCCccccccccccceEEecCCcceeccCccccCcccccEEEcc
Q 045449          308 IADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGILPKSIGNFSLSLETILMANCSISGNIPQVVGNLSNLLVLELG  387 (823)
Q Consensus       308 L~~N~l~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls  387 (823)
                      +++|.++.+..     ..|. +.+|+.+.+..+ ++.+-...|.++ .+|+.+.+..| ++.....+|.+ .+|+.+++ 
T Consensus       187 l~~n~l~~I~~-----~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~-~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l-  255 (401)
T 4fdw_A          187 LSKTKITKLPA-----STFV-YAGIEEVLLPVT-LKEIGSQAFLKT-SQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL-  255 (401)
T ss_dssp             CTTSCCSEECT-----TTTT-TCCCSEEECCTT-CCEECTTTTTTC-TTCCCEECCTT-CCEECTTTTTT-CCCSEEEE-
T ss_pred             cCCCcceEech-----hhEe-ecccCEEEeCCc-hheehhhHhhCC-CCCCEEecCCC-ccCcccccccc-CCccEEEe-
Confidence            77777766532     2343 466777777633 555555566666 56777776653 45455556665 56676666 


Q ss_pred             cCcCCCCchhcccccCCCCEEEccCCCCC-----CcchHhhhcCCCCCEEEcccCcCcccccccccCCCCCCeEeccCCc
Q 045449          388 GNNLTGPIPVTFSQLQTLQAFDLTRNKLA-----GPITDELCHLARLHSLVLQGNKFSGSIPSCLGNLTSVRVLYLGLNI  462 (823)
Q Consensus       388 ~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~-----~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~  462 (823)
                      .|.++......|.++++|+.+++.+|.+.     ...+..|.++++|+.++|. |.++..-..+|.++++|+.++|..| 
T Consensus       256 p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-  333 (401)
T 4fdw_A          256 PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-  333 (401)
T ss_dssp             ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-
T ss_pred             CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-
Confidence            34455444556666667777776666554     2334456666666666666 3455444556666666666666443 


Q ss_pred             cccccchhhhccCCCcEEeccccccccccCccccCCC-CCcEEEcccCC
Q 045449          463 FTSVLSSTIWNLKDILFIDVSSNFLDGPLSLDIGNLK-VVIGLDFSRNN  510 (823)
Q Consensus       463 l~~~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~-~L~~L~ls~N~  510 (823)
                      ++.+-...|.++ +|+.+++++|.+....+..|..++ .+..|.+..|.
T Consensus       334 l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~  381 (401)
T 4fdw_A          334 VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAES  381 (401)
T ss_dssp             CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred             ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHH
Confidence            555555566666 666666666665544444455542 45555554443

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.55  E-value=8.6e-15  Score=142.49  Aligned_cols=135  Identities=21%  Similarity=0.172  Sum_probs=110.3

Q ss_pred             cccCCCCceEEEeecCCCCccCCccccccccccceEEecCCcceeccCccccCcccccEEEcccCcCCCCchhcccccCC
Q 045449          325 SLTNCKKLKVLIVTGNPLDGILPKSIGNFSLSLETILMANCSISGNIPQVVGNLSNLLVLELGGNNLTGPIPVTFSQLQT  404 (823)
Q Consensus       325 ~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~  404 (823)
                      .+.++.+|+.|++++|.++.. |. +..+.++|++|++++|.+++.  ..|..+++|++|+|++|++++..+..|..+++
T Consensus        14 ~~~~~~~L~~L~l~~n~l~~i-~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~   89 (176)
T 1a9n_A           14 QYTNAVRDRELDLRGYKIPVI-EN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD   89 (176)
T ss_dssp             EEECTTSCEEEECTTSCCCSC-CC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred             hcCCcCCceEEEeeCCCCchh-HH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCC
Confidence            456777888888888888854 43 555535899999999999876  67888999999999999999655555688999


Q ss_pred             CCEEEccCCCCCCcchH--hhhcCCCCCEEEcccCcCccccccc----ccCCCCCCeEeccCCcccc
Q 045449          405 LQAFDLTRNKLAGPITD--ELCHLARLHSLVLQGNKFSGSIPSC----LGNLTSVRVLYLGLNIFTS  465 (823)
Q Consensus       405 L~~L~Ls~N~l~~~~p~--~~~~l~~L~~L~Ls~N~l~g~~p~~----~~~l~~L~~L~Ls~N~l~~  465 (823)
                      |++|+|++|+++ .+|.  .+..+++|+.|++++|.++ .+|..    +..+++|+.||++.|....
T Consensus        90 L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~~  154 (176)
T 1a9n_A           90 LTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLKE  154 (176)
T ss_dssp             CCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred             CCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence            999999999996 4555  7889999999999999998 55664    8899999999999998765

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.50  E-value=6.4e-14  Score=135.39  Aligned_cols=107  Identities=22%  Similarity=0.236  Sum_probs=59.9

Q ss_pred             ccEEEcccCcCCCCchhcccccCCCCEEEccCCCCCCcchHhhhcCCCCCEEEcccCcCcccccccccCCCCCCeEeccC
Q 045449          381 LLVLELGGNNLTGPIPVTFSQLQTLQAFDLTRNKLAGPITDELCHLARLHSLVLQGNKFSGSIPSCLGNLTSVRVLYLGL  460 (823)
Q Consensus       381 L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~  460 (823)
                      .+++++++|+++ .+|..+.  ++|++|+|++|+|++..|..|..+++|++|+|++|+|++..|..|..+++|++|+|++
T Consensus        11 ~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~   87 (170)
T 3g39_A           11 GTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND   87 (170)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence            345666666665 3444332  4556666666666655555555556666666666666555444555555555555555


Q ss_pred             CccccccchhhhccCCCcEEeccccccccc
Q 045449          461 NIFTSVLSSTIWNLKDILFIDVSSNFLDGP  490 (823)
Q Consensus       461 N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~  490 (823)
                      |+|++..+..+..+++|+.|+|++|.+++.
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~  117 (170)
T 3g39_A           88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCA  117 (170)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred             CccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence            555555444555555555555555555543

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.48  E-value=3e-13  Score=149.63  Aligned_cols=236  Identities=12%  Similarity=0.080  Sum_probs=104.2

Q ss_pred             ccCCcchhhhhccccccccCCccccccCCCCCcEEEccCCcccccCCcccccCCCCccEEEeeccccccccCccccCCCC
Q 045449          199 EIGNLPYLARLALATNNLVGVVPVTIFNMSALKEISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSITNSSK  278 (823)
Q Consensus       199 ~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~lp~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  278 (823)
                      .|.++++|+.+.+.++ +.......|.++++|+.+++..| ++ .++...+..+..|+.+.+..+...  +.+.+....+
T Consensus       157 aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~-~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~~~~  231 (394)
T 4fs7_A          157 AFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LK-IIRDYCFAECILLENMEFPNSLYY--LGDFALSKTG  231 (394)
T ss_dssp             TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CC-EECTTTTTTCTTCCBCCCCTTCCE--ECTTTTTTCC
T ss_pred             hhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ce-EeCchhhccccccceeecCCCceE--eehhhcccCC
Confidence            3444455555555433 22233344555555555555444 22 344444444555555554443322  2222333344


Q ss_pred             CCeEEeecccccccCCCccCCCcccCcccccCccccCCCCcccccccccCCCCceEEEeecCCCCccCCccccccccccc
Q 045449          279 LSDLELGENLFSGFIPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGILPKSIGNFSLSLE  358 (823)
Q Consensus       279 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~  358 (823)
                      |+.+.+..+ ++.+....|..+..|+.+.+..+..+-      ....|.++..+                         +
T Consensus       232 l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~i------~~~~F~~~~~l-------------------------~  279 (394)
T 4fs7_A          232 VKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLRI------GGSLFYNCSGL-------------------------K  279 (394)
T ss_dssp             CCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCEE------CSCTTTTCTTC-------------------------C
T ss_pred             CceEEECCC-ceecccccccccccceeEEcCCCccee------ecccccccccc-------------------------c
Confidence            555544322 222333344444444444444332221      11233334444                         4


Q ss_pred             eEEecCCcceeccCccccCcccccEEEcccCcCCCCchhcccccCCCCEEEccCCCCCCcchHhhhcCCCCCEEEcccCc
Q 045449          359 TILMANCSISGNIPQVVGNLSNLLVLELGGNNLTGPIPVTFSQLQTLQAFDLTRNKLAGPITDELCHLARLHSLVLQGNK  438 (823)
Q Consensus       359 ~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~  438 (823)
                      .+....+.+   ....|..+.+|+.+.+..+ ++..-...|.++.+|+.++|.++ ++..-...|.++.+|+.+++..| 
T Consensus       280 ~~~~~~~~i---~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-  353 (394)
T 4fs7_A          280 KVIYGSVIV---PEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-  353 (394)
T ss_dssp             EEEECSSEE---CTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-
T ss_pred             eeccCceee---ccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-
Confidence            444333221   1234445555555555433 33223344555555555555433 44333445555666666666544 


Q ss_pred             CcccccccccCCCCCCeEeccCCccccccchhhhccCCCcE
Q 045449          439 FSGSIPSCLGNLTSVRVLYLGLNIFTSVLSSTIWNLKDILF  479 (823)
Q Consensus       439 l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  479 (823)
                      ++..-..+|.++++|+.+++..+ ++. +...|.++++|+.
T Consensus       354 l~~I~~~aF~~C~~L~~i~lp~~-~~~-~~~~F~~c~~L~~  392 (394)
T 4fs7_A          354 LRKIGANAFQGCINLKKVELPKR-LEQ-YRYDFEDTTKFKW  392 (394)
T ss_dssp             CCEECTTTBTTCTTCCEEEEEGG-GGG-GGGGBCTTCEEEE
T ss_pred             ccEehHHHhhCCCCCCEEEECCC-CEE-hhheecCCCCCcE
Confidence            44344455666666666666543 111 2234444554443

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.48  E-value=9.9e-14  Score=134.04  Aligned_cols=110  Identities=18%  Similarity=0.171  Sum_probs=100.7

Q ss_pred             CCCEEEccCCCCCCcchHhhhcCCCCCEEEcccCcCcccccccccCCCCCCeEeccCCccccccchhhhccCCCcEEecc
Q 045449          404 TLQAFDLTRNKLAGPITDELCHLARLHSLVLQGNKFSGSIPSCLGNLTSVRVLYLGLNIFTSVLSSTIWNLKDILFIDVS  483 (823)
Q Consensus       404 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs  483 (823)
                      +.+.+++++|.++. +|..+  .++|+.|+|++|+|++..|..|.++++|++|+|++|+|++..+..|..+++|++|+|+
T Consensus        10 ~~~~l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~   86 (170)
T 3g39_A           10 SGTTVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN   86 (170)
T ss_dssp             ETTEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEEeCCCCcCc-cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence            45799999999995 66555  3789999999999999999999999999999999999999888889999999999999


Q ss_pred             ccccccccCccccCCCCCcEEEcccCCCCCCCC
Q 045449          484 SNFLDGPLSLDIGNLKVVIGLDFSRNNLSGDIP  516 (823)
Q Consensus       484 ~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~ip  516 (823)
                      +|+|++..+..+..++.|+.|+|++|.+++..+
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~  119 (170)
T 3g39_A           87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS  119 (170)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred             CCccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence            999998888889999999999999999997765

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.47  E-value=7.5e-13  Score=146.39  Aligned_cols=330  Identities=10%  Similarity=0.041  Sum_probs=206.1

Q ss_pred             CcccCCCCCCcEEEccCCCCCCCCCCCCCCCCCCCEEECCCCcCcCCCchhhhcCCCCcEEecccccccCccCccccCCC
Q 045449           69 TPQLGNLSSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQLFGSLSSFIFNMSSMTTIDLSINRLSGELPANICKIP  148 (823)
Q Consensus        69 ~~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~p  148 (823)
                      ..+|.++++|+.+.|.. .++.+-..+|.++++|+.++|..+ ++.....+|.++.+|+.+.+..+ ++..-.       
T Consensus        64 ~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~-------  133 (394)
T 4fs7_A           64 YAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGV-------  133 (394)
T ss_dssp             TTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECT-------
T ss_pred             HHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecc-------
Confidence            35688899999999974 477566788999999999999865 65566778889999998877654 221111       


Q ss_pred             CCCccccccceeeeccceeeccCccccccchhhHHHHHhhcCCCcccCCcccCCcchhhhhccccccccCCccccccCCC
Q 045449          149 STLSKCKQLEELNLGFNNLSGAIPKEIGNLTKLKEIISTITNSTVCEIPREIGNLPYLARLALATNNLVGVVPVTIFNMS  228 (823)
Q Consensus       149 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~~l~~n~~~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~  228 (823)
                      .+|.++..++.........  .-..+|.++++|+.+.  ..+.....-...|.++.+|+.+++..| ++......|.+..
T Consensus       134 ~aF~~~~~~~~~~~~~~~~--i~~~aF~~c~~L~~i~--l~~~~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~  208 (394)
T 4fs7_A          134 EAFKGCDFKEITIPEGVTV--IGDEAFATCESLEYVS--LPDSMETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECI  208 (394)
T ss_dssp             TTTTTCCCSEEECCTTCCE--ECTTTTTTCTTCCEEE--CCTTCCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCT
T ss_pred             eeeecccccccccCccccc--cchhhhcccCCCcEEe--cCCccceeccccccCCCCceEEEcCCC-ceEeCchhhcccc
Confidence            1233433333322222221  1223455555555441  222222222456777788888888766 5555667788888


Q ss_pred             CCcEEEccCCcccccCCcccccCCCCccEEEeeccccccccCccccCCCCCCeEEeecccccccCCCccCCCcccCcccc
Q 045449          229 ALKEISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSITNSSKLSDLELGENLFSGFIPNTIGNLRNLEFGNI  308 (823)
Q Consensus       229 ~L~~L~Ls~N~l~g~lp~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  308 (823)
                      .|+.+.+..+...  +....+. ..+|+.+.+..+ ++..-...+.++..|+.+.+..+... +....|..+..++.+..
T Consensus       209 ~L~~i~~~~~~~~--i~~~~~~-~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~  283 (394)
T 4fs7_A          209 LLENMEFPNSLYY--LGDFALS-KTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIY  283 (394)
T ss_dssp             TCCBCCCCTTCCE--ECTTTTT-TCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEE
T ss_pred             ccceeecCCCceE--eehhhcc-cCCCceEEECCC-ceecccccccccccceeEEcCCCcce-eeccccccccccceecc
Confidence            8888888776543  3333333 678888888643 44455667888899999999887554 66778888888888777


Q ss_pred             cCccccCCCCcccccccccCCCCceEEEeecCCCCccCCccccccccccceEEecCCcceeccCccccCcccccEEEccc
Q 045449          309 ADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGILPKSIGNFSLSLETILMANCSISGNIPQVVGNLSNLLVLELGG  388 (823)
Q Consensus       309 ~~N~l~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~  388 (823)
                      ..+.+..        ..|..+.+|+.+.+..+ ++                         ..-..+|.++.+|+.++|.+
T Consensus       284 ~~~~i~~--------~~F~~~~~L~~i~l~~~-i~-------------------------~I~~~aF~~c~~L~~i~lp~  329 (394)
T 4fs7_A          284 GSVIVPE--------KTFYGCSSLTEVKLLDS-VK-------------------------FIGEEAFESCTSLVSIDLPY  329 (394)
T ss_dssp             CSSEECT--------TTTTTCTTCCEEEECTT-CC-------------------------EECTTTTTTCTTCCEECCCT
T ss_pred             Cceeecc--------ccccccccccccccccc-cc-------------------------eechhhhcCCCCCCEEEeCC
Confidence            6654432        24556666666665432 32                         23344566666666666653


Q ss_pred             CcCCCCchhcccccCCCCEEEccCCCCCCcchHhhhcCCCCCEEEcccCcCcccccccccCCCCCCeE
Q 045449          389 NNLTGPIPVTFSQLQTLQAFDLTRNKLAGPITDELCHLARLHSLVLQGNKFSGSIPSCLGNLTSVRVL  456 (823)
Q Consensus       389 N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L  456 (823)
                      + ++..-..+|.++.+|+.+++..| ++..-...|.++.+|+.+++..+ +. .+..+|.++++|+.+
T Consensus       330 ~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~I  393 (394)
T 4fs7_A          330 L-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKWI  393 (394)
T ss_dssp             T-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred             c-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence            3 44333455666667777776655 55444556777777777777654 22 334567777766653

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.46  E-value=2.5e-13  Score=131.69  Aligned_cols=105  Identities=20%  Similarity=0.235  Sum_probs=93.2

Q ss_pred             EEEEcCCCCCccccCcccCCCCCCcEEEccCCCCCCCCCCCCCCCCCCCEEECCCCcCcCCCchhhhcCCCCcEEecccc
Q 045449           55 IGLNISSFNLQGTITPQLGNLSSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQLFGSLSSFIFNMSSMTTIDLSIN  134 (823)
Q Consensus        55 ~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N  134 (823)
                      +.+++++++++ .+|..+.  ++|++|+|++|+|++..|..|.++++|++|+|++|+|++..+..|.++++|++|+|++|
T Consensus        15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            47899999996 6777665  89999999999999999999999999999999999999888888899999999999999


Q ss_pred             cccCccCccccCCCCCCccccccceeeeccceeec
Q 045449          135 RLSGELPANICKIPSTLSKCKQLEELNLGFNNLSG  169 (823)
Q Consensus       135 ~l~~~~p~~~~~~p~~~~~l~~L~~L~Ls~N~l~~  169 (823)
                      +|++..+..       |..+++|++|+|++|.+..
T Consensus        92 ~l~~l~~~~-------~~~l~~L~~L~L~~N~~~c  119 (174)
T 2r9u_A           92 HLKSIPRGA-------FDNLKSLTHIYLYNNPWDC  119 (174)
T ss_dssp             CCCCCCTTT-------TTTCTTCSEEECCSSCBCT
T ss_pred             ccceeCHHH-------hccccCCCEEEeCCCCccc
Confidence            998543332       4889999999999999984

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.46  E-value=1.8e-13  Score=132.65  Aligned_cols=104  Identities=22%  Similarity=0.253  Sum_probs=55.1

Q ss_pred             cEEEcccCcCCCCchhcccccCCCCEEEccCCCCCCcchHhhhcCCCCCEEEcccCcCcccccccccCCCCCCeEeccCC
Q 045449          382 LVLELGGNNLTGPIPVTFSQLQTLQAFDLTRNKLAGPITDELCHLARLHSLVLQGNKFSGSIPSCLGNLTSVRVLYLGLN  461 (823)
Q Consensus       382 ~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N  461 (823)
                      +.+++++|+++ .+|..+.  ++|++|+|++|+|++..|..|.++++|+.|+|++|+|++..+..|.++++|+.|+|++|
T Consensus        15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            45555555554 4444332  45555555555555555555555555555555555555444444455555555555555


Q ss_pred             ccccccchhhhccCCCcEEeccccccc
Q 045449          462 IFTSVLSSTIWNLKDILFIDVSSNFLD  488 (823)
Q Consensus       462 ~l~~~~p~~~~~l~~L~~LdLs~N~l~  488 (823)
                      +|++..+..+..+++|+.|+|++|.+.
T Consensus        92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           92 HLKSIPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred             ccceeCHHHhccccCCCEEEeCCCCcc
Confidence            555544444555555555555555554

>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*

Probab=99.45  E-value=2.5e-14  Score=150.25  Aligned_cols=125  Identities=23%  Similarity=0.172  Sum_probs=93.8

Q ss_pred             HHHHHHHhccCCccceeeccC-----------CeEEEEEEehHhhH------------------HHHHHHHHHHHHHhhc
Q 045449          620 YHELLRATDRFSENNLIGIGN-----------GMEVAVKVFHQQYE------------------RALKSFEDECEVRKRI  670 (823)
Q Consensus       620 ~~~l~~at~~f~~~~~lg~g~-----------~~~vavK~~~~~~~------------------~~~~~~~~E~~~l~~l  670 (823)
                      ...+......|...+.||.|+           |..||||+++....                  .....|.+|+++++++
T Consensus        82 l~~~~~~~~~~~~~~~iG~G~~g~Vy~~~~~~g~~valK~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~E~~~l~~l  161 (282)
T 1zar_A           82 LHRLVRSGKVDAIGKLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKL  161 (282)
T ss_dssp             HHHHHHTTSCSEEEEEEEECSSEEEEEEEETTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHhCCeEEEecCEeccCCCceEEEEEeCCCCEEEEEEEECCCCchhhhhhhhhhcchhhHHHHHHHHHHHHHHHHhc
Confidence            334444555666678899885           67899999964321                  2456799999999998


Q ss_pred             chhhHHH-----------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeeccccc
Q 045449          671 RHRNLVK-----------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAK  721 (823)
Q Consensus       671 ~h~niv~-----------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~  721 (823)
                      +|+++..                             ++.|++.+|+++|+.||+||||||+|||++ ++.+||+|||+|+
T Consensus       162 ~~~~v~~~~~~~~~~lvmE~~~g~~L~~l~~~~~~~i~~qi~~~l~~lH~~giiHrDlkp~NILl~-~~~vkl~DFG~a~  240 (282)
T 1zar_A          162 QGLAVPKVYAWEGNAVLMELIDAKELYRVRVENPDEVLDMILEEVAKFYHRGIVHGDLSQYNVLVS-EEGIWIIDFPQSV  240 (282)
T ss_dssp             TTSSSCCEEEEETTEEEEECCCCEEGGGCCCSCHHHHHHHHHHHHHHHHHTTEECSCCSTTSEEEE-TTEEEECCCTTCE
T ss_pred             cCCCcCeEEeccceEEEEEecCCCcHHHcchhhHHHHHHHHHHHHHHHHHCCCEeCCCCHHHEEEE-CCcEEEEECCCCe
Confidence            8433222                             578899999999999999999999999999 9999999999987


Q ss_pred             ccCCCCccccccccccCCCcCcccccCC----------Cccccccceeh
Q 045449          722 LLSGEDQLSKQTQTLATIGYMAPEYGTK----------GRVSTRGDVCS  760 (823)
Q Consensus       722 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~----------~~~~~~~Dv~S  760 (823)
                      .               +..|+|||++.+          ..|+..+|+|.
T Consensus       241 ~---------------~~~~~a~e~l~rdv~~i~~~f~~~~~~~~~~~~  274 (282)
T 1zar_A          241 E---------------VGEEGWREILERDVRNIITYFSRTYRTEKDINS  274 (282)
T ss_dssp             E---------------TTSTTHHHHHHHHHHHHHHHHHHHHCCCCCHHH
T ss_pred             E---------------CCCCCHHHHHHHHHHHHHHHHHHhcCCCCChHH
Confidence            3               345789998754          34566666664

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.36  E-value=1.2e-12  Score=142.09  Aligned_cols=108  Identities=19%  Similarity=0.147  Sum_probs=93.0

Q ss_pred             ccceeeeeCCCCCcEEEEEcCCC-CCccccCcccCCCCCCcEEEccC-CCCCCCCCCCCCCCCCCCEEECCCCcCcCCCc
Q 045449           40 CIWIGITCDVNSHRVIGLNISSF-NLQGTITPQLGNLSSLQTLDLSH-NKLSGNIPSSIFNMHTLKLLDFSDNQLFGSLS  117 (823)
Q Consensus        40 c~w~gv~c~~~~~~v~~L~L~~~-~l~g~~~~~l~~l~~L~~L~Ls~-N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p  117 (823)
                      |.|..|.|+.            + +|++ +|. +..+++|++|+|++ |+|++..+..|++|++|++|+|++|+|++..|
T Consensus         8 C~~~~v~~~~------------~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~   73 (347)
T 2ifg_A            8 HGSSGLRCTR------------DGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAP   73 (347)
T ss_dssp             SSSSCEECCS------------SCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECT
T ss_pred             ccCCEEEcCC------------CCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCH
Confidence            8888777753            3 5664 777 99999999999996 99998888999999999999999999999999


Q ss_pred             hhhhcCCCCcEEecccccccCccCccccCCCCCCccccccceeeeccceeec
Q 045449          118 SFIFNMSSMTTIDLSINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSG  169 (823)
Q Consensus       118 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~p~~~~~l~~L~~L~Ls~N~l~~  169 (823)
                      ..|.++++|++|||++|+|++..+..+       ..++ |++|+|++|.|..
T Consensus        74 ~~~~~l~~L~~L~l~~N~l~~~~~~~~-------~~~~-L~~l~l~~N~~~c  117 (347)
T 2ifg_A           74 DAFHFTPRLSRLNLSFNALESLSWKTV-------QGLS-LQELVLSGNPLHC  117 (347)
T ss_dssp             TGGGSCSCCCEEECCSSCCSCCCSTTT-------CSCC-CCEEECCSSCCCC
T ss_pred             HHhcCCcCCCEEeCCCCccceeCHHHc-------ccCC-ceEEEeeCCCccC
Confidence            999999999999999999995433323       4444 9999999999984

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.35  E-value=6.2e-14  Score=153.17  Aligned_cols=135  Identities=13%  Similarity=0.078  Sum_probs=73.9

Q ss_pred             cccccEEEcccCcCCCCchhcc-----cccCCCCEEEccCCCCCCc----chHhhhcCCCCCEEEcccCcCccc----cc
Q 045449          378 LSNLLVLELGGNNLTGPIPVTF-----SQLQTLQAFDLTRNKLAGP----ITDELCHLARLHSLVLQGNKFSGS----IP  444 (823)
Q Consensus       378 l~~L~~L~Ls~N~l~g~~p~~~-----~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~g~----~p  444 (823)
                      +++|+.|+|++|+++......+     ...++|++|+|++|.|+..    ++..+..+++|++|+|++|.|+..    ++
T Consensus       125 L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~  204 (372)
T 3un9_A          125 FLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLA  204 (372)
T ss_dssp             HHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHH
T ss_pred             HHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHH
Confidence            3455566666666553322222     2345566666666666532    233345566677777777766542    24


Q ss_pred             ccccCCCCCCeEeccCCccccc----cchhhhccCCCcEEeccccccccccCccccCCC-----CCcEEE--cccCCCC
Q 045449          445 SCLGNLTSVRVLYLGLNIFTSV----LSSTIWNLKDILFIDVSSNFLDGPLSLDIGNLK-----VVIGLD--FSRNNLS  512 (823)
Q Consensus       445 ~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~-----~L~~L~--ls~N~l~  512 (823)
                      ..+...++|+.|+|++|.+++.    ++..+...+.|++|||++|.|+..-...+..+.     .|+.+.  +..|.++
T Consensus       205 ~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~  283 (372)
T 3un9_A          205 AQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS  283 (372)
T ss_dssp             HHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CH
T ss_pred             HHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence            4555666777777777777653    333445567777888888877765444443331     155555  5555554

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.34  E-value=1.5e-13  Score=150.04  Aligned_cols=158  Identities=18%  Similarity=0.115  Sum_probs=118.6

Q ss_pred             ccceEEecCCcceeccCcccc-----CcccccEEEcccCcCCCCchhcc-cccCCCCEEEccCCCCCCcchHhhh-----
Q 045449          356 SLETILMANCSISGNIPQVVG-----NLSNLLVLELGGNNLTGPIPVTF-SQLQTLQAFDLTRNKLAGPITDELC-----  424 (823)
Q Consensus       356 ~L~~L~L~~N~l~~~~p~~~~-----~l~~L~~L~Ls~N~l~g~~p~~~-~~l~~L~~L~Ls~N~l~~~~p~~~~-----  424 (823)
                      .|++|+|++|.++......+.     ..++|++|+|++|.++......+ ..+++|+.|+|++|.|+......++     
T Consensus        73 ~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~  152 (372)
T 3un9_A           73 SLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLH  152 (372)
T ss_dssp             TCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHS
T ss_pred             hCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHh
Confidence            455555555555433222222     23689999999999975444333 4567899999999999866555553     


Q ss_pred             cCCCCCEEEcccCcCccc----ccccccCCCCCCeEeccCCcccccc----chhhhccCCCcEEeccccccccc----cC
Q 045449          425 HLARLHSLVLQGNKFSGS----IPSCLGNLTSVRVLYLGLNIFTSVL----SSTIWNLKDILFIDVSSNFLDGP----LS  492 (823)
Q Consensus       425 ~l~~L~~L~Ls~N~l~g~----~p~~~~~l~~L~~L~Ls~N~l~~~~----p~~~~~l~~L~~LdLs~N~l~g~----~p  492 (823)
                      ..++|++|+|++|.|+..    ++..+..+++|++|+|++|.+++..    +..+...+.|+.|||++|.|+..    ++
T Consensus       153 ~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~  232 (372)
T 3un9_A          153 DQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALA  232 (372)
T ss_dssp             TTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHH
T ss_pred             cCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHH
Confidence            468899999999999753    4555678899999999999998643    56677888999999999999863    44


Q ss_pred             ccccCCCCCcEEEcccCCCCC
Q 045449          493 LDIGNLKVVIGLDFSRNNLSG  513 (823)
Q Consensus       493 ~~~~~l~~L~~L~ls~N~l~g  513 (823)
                      ..+...+.|++|||++|.++.
T Consensus       233 ~~L~~~~~L~~L~Ls~N~i~~  253 (372)
T 3un9_A          233 RAAREHPSLELLHLYFNELSS  253 (372)
T ss_dssp             HHHHHCSSCCEEECTTSSCCH
T ss_pred             HHHHhCCCCCEEeccCCCCCH
Confidence            556677999999999999873

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.30  E-value=3.9e-12  Score=138.03  Aligned_cols=102  Identities=17%  Similarity=0.137  Sum_probs=54.2

Q ss_pred             EecCC-cceeccCccccCcccccEEEccc-CcCCCCchhcccccCCCCEEEccCCCCCCcchHhhhcCCCCCEEEcccCc
Q 045449          361 LMANC-SISGNIPQVVGNLSNLLVLELGG-NNLTGPIPVTFSQLQTLQAFDLTRNKLAGPITDELCHLARLHSLVLQGNK  438 (823)
Q Consensus       361 ~L~~N-~l~~~~p~~~~~l~~L~~L~Ls~-N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~  438 (823)
                      +++++ ++++ +|. +..+++|+.|+|++ |+|++..+..|.++++|++|+|++|+|++..|..|.++++|+.|+|++|+
T Consensus        14 ~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~   91 (347)
T 2ifg_A           14 RCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA   91 (347)
T ss_dssp             ECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC
T ss_pred             EcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc
Confidence            44444 4442 344 55555555555553 55555444555555555555555555555555555555555555555555


Q ss_pred             CcccccccccCCCCCCeEeccCCcccc
Q 045449          439 FSGSIPSCLGNLTSVRVLYLGLNIFTS  465 (823)
Q Consensus       439 l~g~~p~~~~~l~~L~~L~Ls~N~l~~  465 (823)
                      |++..+..|..++ |+.|+|++|.|+.
T Consensus        92 l~~~~~~~~~~~~-L~~l~l~~N~~~c  117 (347)
T 2ifg_A           92 LESLSWKTVQGLS-LQELVLSGNPLHC  117 (347)
T ss_dssp             CSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred             cceeCHHHcccCC-ceEEEeeCCCccC
Confidence            5544444444433 5555555555543

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.17  E-value=5.9e-10  Score=123.05  Aligned_cols=139  Identities=9%  Similarity=0.085  Sum_probs=96.2

Q ss_pred             cceeccCccccCcccccEEEcccCcCCCCchhcccccCCCCEEEccCCCCCCcchHhhhcCCCCCEEEcccCcCcccccc
Q 045449          366 SISGNIPQVVGNLSNLLVLELGGNNLTGPIPVTFSQLQTLQAFDLTRNKLAGPITDELCHLARLHSLVLQGNKFSGSIPS  445 (823)
Q Consensus       366 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~  445 (823)
                      .++..-..+|.++.+|+.+.+.++..+ .....|.++..|+.+.+. +.++......|.++.+|+.++|..+ ++..-..
T Consensus       252 ~v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~  328 (394)
T 4gt6_A          252 GVARIETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDD  328 (394)
T ss_dssp             TEEEECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTT
T ss_pred             cceEcccceeeecccccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHh
Confidence            445555678888899999988766543 445668888899999886 4566555667888899999999754 6645567


Q ss_pred             cccCCCCCCeEeccCCccccccchhhhccCCCcEEeccccccccccCccccCCCCCcEEEcccCCC
Q 045449          446 CLGNLTSVRVLYLGLNIFTSVLSSTIWNLKDILFIDVSSNFLDGPLSLDIGNLKVVIGLDFSRNNL  511 (823)
Q Consensus       446 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~ls~N~l  511 (823)
                      +|.++++|+.+.|..+ ++.+-...|.++++|+.+++++|....   ..+.....|+.+.+..|.+
T Consensus       329 aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          329 AFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSI  390 (394)
T ss_dssp             TTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC----------
T ss_pred             HhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence            8889999999998654 676667788899999999998886542   3456667788777766554

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.15  E-value=1.1e-09  Score=120.95  Aligned_cols=335  Identities=12%  Similarity=0.135  Sum_probs=172.1

Q ss_pred             CCCCCCCCCC-CCCEEECCCCcCcCCCchhhhcCCCCcEEecccccccCccCccccCCC-CCCccccccceeeeccceee
Q 045449           91 NIPSSIFNMH-TLKLLDFSDNQLFGSLSSFIFNMSSMTTIDLSINRLSGELPANICKIP-STLSKCKQLEELNLGFNNLS  168 (823)
Q Consensus        91 ~~p~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~p-~~~~~l~~L~~L~Ls~N~l~  168 (823)
                      +-..+|.+.. .|+.+.+..+ ++..-..+|.++++|+.+.++.|.     |..+..+. .+|..+.+|+.+.+..+ ++
T Consensus        54 Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~-----p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~  126 (394)
T 4gt6_A           54 IGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNK-----PSCVKKIGRQAFMFCSELTDIPILDS-VT  126 (394)
T ss_dssp             ECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGC-----CCCCCEECTTTTTTCTTCCBCGGGTT-CS
T ss_pred             cCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCC-----CCeeeEechhhchhcccceeeccCCc-cc
Confidence            4456777774 5888888754 665667788888888888887663     22222221 24566667766655433 21


Q ss_pred             ccCccccccchhhHHHHHhhcCCCcccCCcccCCcchhhhhccccccccCCccccccCCCCCcEEEccCCcccccCCccc
Q 045449          169 GAIPKEIGNLTKLKEIISTITNSTVCEIPREIGNLPYLARLALATNNLVGVVPVTIFNMSALKEISLLNNSLSGSLPSRI  248 (823)
Q Consensus       169 ~~~p~~l~~l~~L~~L~~l~~n~~~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~lp~~~  248 (823)
                      ..-                         ...|.++.+|+.+.+..+ +.......|.+..+|+.+.+..+ ++ .+....
T Consensus       127 ~I~-------------------------~~aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~-~I~~~a  178 (394)
T 4gt6_A          127 EID-------------------------SEAFHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VT-AIEERA  178 (394)
T ss_dssp             EEC-------------------------TTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CC-EECTTT
T ss_pred             eeh-------------------------hhhhhhhcccccccccce-eeeecccceecccccccccccce-ee-Eecccc
Confidence            111                         123444455555555432 33344455666677777776654 33 344444


Q ss_pred             ccCCCCccEEEeeccccccccCccccCCCCCCeEEeecccccccCCCccCCCcccCcccccCccccCCCCcccccccccC
Q 045449          249 DLSLPNVETLNLGINSFSGTIPSSITNSSKLSDLELGENLFSGFIPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTN  328 (823)
Q Consensus       249 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~  328 (823)
                      +. ..+|+.+.+..+-. .....+|.++.+++......+......-..+........                ....+..
T Consensus       179 F~-~~~l~~i~ip~~~~-~i~~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~  240 (394)
T 4gt6_A          179 FT-GTALTQIHIPAKVT-RIGTNAFSECFALSTITSDSESYPAIDNVLYEKSANGDY----------------ALIRYPS  240 (394)
T ss_dssp             TT-TCCCSEEEECTTCC-EECTTTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCE----------------EEEECCT
T ss_pred             cc-ccceeEEEECCccc-ccccchhhhccccceecccccccccccceeecccccccc----------------ccccccc
Confidence            44 45666666654432 244555666666666665554433211111100000000                0000111


Q ss_pred             CCCceEEEeecCCCCccCCccccccccccceEEecCCcceeccCccccCcccccEEEcccCcCCCCchhcccccCCCCEE
Q 045449          329 CKKLKVLIVTGNPLDGILPKSIGNFSLSLETILMANCSISGNIPQVVGNLSNLLVLELGGNNLTGPIPVTFSQLQTLQAF  408 (823)
Q Consensus       329 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L  408 (823)
                      ...+..+.+. +.+...-...|.++ ..|+.+.+..+.. .....+|.++++|+.+.+. +.++......|.++.+|+.+
T Consensus       241 ~~~~~~~~ip-~~v~~i~~~aF~~c-~~L~~i~lp~~~~-~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i  316 (394)
T 4gt6_A          241 QREDPAFKIP-NGVARIETHAFDSC-AYLASVKMPDSVV-SIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSI  316 (394)
T ss_dssp             TCCCSEEECC-TTEEEECTTTTTTC-SSCCEEECCTTCC-EECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEE
T ss_pred             ccccceEEcC-CcceEcccceeeec-ccccEEecccccc-eecCcccccccccccccCC-CcccccCceeecCCCCcCEE
Confidence            1122222221 11222223334444 4566666654332 2445667777777777775 44553444567777777777


Q ss_pred             EccCCCCCCcchHhhhcCCCCCEEEcccCcCcccccccccCCCCCCeEeccCCccccccchhhhccCCCcEEecccccc
Q 045449          409 DLTRNKLAGPITDELCHLARLHSLVLQGNKFSGSIPSCLGNLTSVRVLYLGLNIFTSVLSSTIWNLKDILFIDVSSNFL  487 (823)
Q Consensus       409 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l  487 (823)
                      +|..+ ++..-...|.++.+|+.+.|..+ ++..-..+|.++++|+.+++.+|....   ..+.....|+.+.+..|.+
T Consensus       317 ~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          317 DIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSI  390 (394)
T ss_dssp             ECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC----------
T ss_pred             EeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence            77654 55444556777777877777544 554445677778888888877765432   3455667777777766654

>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*

Probab=99.07  E-value=9.6e-11  Score=121.24  Aligned_cols=92  Identities=22%  Similarity=0.299  Sum_probs=71.6

Q ss_pred             CCccceeeccC------------CeE--EEEEEehHhh------------------------HHHHHHHHHHHHHHhhcc
Q 045449          630 FSENNLIGIGN------------GME--VAVKVFHQQY------------------------ERALKSFEDECEVRKRIR  671 (823)
Q Consensus       630 f~~~~~lg~g~------------~~~--vavK~~~~~~------------------------~~~~~~~~~E~~~l~~l~  671 (823)
                      |...+.||.|+            |..  ||||+++...                        ......+.+|++++.++.
T Consensus        49 ~~i~~~ig~G~~g~Vy~a~~~~~g~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~  128 (258)
T 1zth_A           49 TAMGGVISTGKEANVFYADGVFDGKPVAMAVKIYRIETSEFDKMDEYLYGDERFDMRRISPKEKVFIWTEKEFRNLERAK  128 (258)
T ss_dssp             EEEEEEEEECSSEEEEEEEEEETTEEEEEEEEEECCC-------GGGTTTCTTSCC----CHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhCCEEeecceEEEEEEEEcCCCcEeeEEEEEEECCccchhhHHHhhcccchhhhhccChHHHHHHHHHHHHHHHHHHH
Confidence            44567788875            667  9999864321                        112246889999999887


Q ss_pred             hhhHH----------------------------------------HHHHHHHHHhhhcC-CCCEEeccCCCCCEEeCCCC
Q 045449          672 HRNLV----------------------------------------KIISSSLEYLHFGH-SIPIIHCDLKPSNVLLDEDM  710 (823)
Q Consensus       672 h~niv----------------------------------------~~~~~~l~~L~~~h-~~~ivHrdlk~~NiLl~~~~  710 (823)
                      |+++.                                        .++.|++.+|.++| +.||+||||||+|||++.  
T Consensus       129 ~~~i~~p~~~~~~~~~lVmE~~g~~g~~~~~L~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~givHrDlkp~NILl~~--  206 (258)
T 1zth_A          129 EAGVSVPQPYTYMKNVLLMEFIGEDELPAPTLVELGRELKELDVEGIFNDVVENVKRLYQEAELVHADLSEYNIMYID--  206 (258)
T ss_dssp             HTTCCCCCEEEEETTEEEEECCEETTEECCBHHHHGGGGGGSCHHHHHHHHHHHHHHHHHTSCEECSSCSTTSEEESS--
T ss_pred             hCCCCCCeEEEcCCCEEEEEecCCCCCccccHHHHhhccChHHHHHHHHHHHHHHHHHHHHCCEEeCCCCHHHEEEcC--
Confidence            76431                                        14678899999999 999999999999999998  


Q ss_pred             cEEEeeccccccc
Q 045449          711 VAHISDFGIAKLL  723 (823)
Q Consensus       711 ~~kl~DfGla~~~  723 (823)
                      .++|+|||+|...
T Consensus       207 ~~~liDFG~a~~~  219 (258)
T 1zth_A          207 KVYFIDMGQAVTL  219 (258)
T ss_dssp             SEEECCCTTCEET
T ss_pred             cEEEEECcccccC
Confidence            8999999999764

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.86  E-value=2.2e-09  Score=116.04  Aligned_cols=83  Identities=16%  Similarity=0.274  Sum_probs=43.5

Q ss_pred             CCCCCEEEcccCcCccccccccc---CCCCCCeEeccCCccccc----cchhhhccCCCcEEeccccccccccCccccC-
Q 045449          426 LARLHSLVLQGNKFSGSIPSCLG---NLTSVRVLYLGLNIFTSV----LSSTIWNLKDILFIDVSSNFLDGPLSLDIGN-  497 (823)
Q Consensus       426 l~~L~~L~Ls~N~l~g~~p~~~~---~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~-  497 (823)
                      +++|+.|+|++|.+.+..+..+.   .+++|++|+|+.|.+++.    ++..+..+++|+.|+|++|.++...-..+.. 
T Consensus       251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~a  330 (362)
T 2ra8_A          251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKS  330 (362)
T ss_dssp             CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHH
T ss_pred             CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHH
Confidence            34555555555555433222221   345566666666666553    2333345667777777777666543333332 


Q ss_pred             CCCCcEEEcccCC
Q 045449          498 LKVVIGLDFSRNN  510 (823)
Q Consensus       498 l~~L~~L~ls~N~  510 (823)
                      +  ...++++.|+
T Consensus       331 l--g~~~~~~~~~  341 (362)
T 2ra8_A          331 L--PMKIDVSDSQ  341 (362)
T ss_dssp             C--CSEEECCSBC
T ss_pred             c--CCEEEecCCc
Confidence            2  3557777765

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.85  E-value=1.4e-09  Score=117.71  Aligned_cols=64  Identities=6%  Similarity=0.236  Sum_probs=29.6

Q ss_pred             cCCCCEEEccCCCCCCcchHhhh---cCCCCCEEEcccCcCccc----ccccccCCCCCCeEeccCCcccc
Q 045449          402 LQTLQAFDLTRNKLAGPITDELC---HLARLHSLVLQGNKFSGS----IPSCLGNLTSVRVLYLGLNIFTS  465 (823)
Q Consensus       402 l~~L~~L~Ls~N~l~~~~p~~~~---~l~~L~~L~Ls~N~l~g~----~p~~~~~l~~L~~L~Ls~N~l~~  465 (823)
                      +++|++|+|++|.+.+..+..+.   .+++|++|+|+.|.+.+.    ++..+..+++|+.|+|++|.++.
T Consensus       251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d  321 (362)
T 2ra8_A          251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD  321 (362)
T ss_dssp             CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred             CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence            44555555555555433322222   244555555555555442    22222334555555555555444

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.80  E-value=1.1e-07  Score=104.06  Aligned_cols=271  Identities=9%  Similarity=0.053  Sum_probs=121.7

Q ss_pred             ccCCcchhhhhccccccccCCccccccCCCCCcEEEccCCcccccCCcccccCCCCccEEEeeccccccccCccccCCCC
Q 045449          199 EIGNLPYLARLALATNNLVGVVPVTIFNMSALKEISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSITNSSK  278 (823)
Q Consensus       199 ~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~lp~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  278 (823)
                      +|.++.+|+.++|..+ ++.+-..+|.+. +|+.+.+..+ ++ .+....+. ..+|+.+++..+ +...-...|.+. +
T Consensus        64 aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~-~I~~~aF~-~~~L~~i~lp~~-~~~i~~~~F~~~-~  136 (379)
T 4h09_A           64 NFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VK-KFGDYVFQ-GTDLDDFEFPGA-TTEIGNYIFYNS-S  136 (379)
T ss_dssp             TTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CC-EECTTTTT-TCCCSEEECCTT-CCEECTTTTTTC-C
T ss_pred             HhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-ee-Eeccceec-cCCcccccCCCc-cccccccccccc-e
Confidence            4555555666666432 444444555554 5666655543 33 44555554 346676666544 222333334333 4


Q ss_pred             CCeEEeecccccccCCCccCCCcccCcccccCccccCCCCc-------ccccccccCCCCceEEEeecCCCCccCCcccc
Q 045449          279 LSDLELGENLFSGFIPNTIGNLRNLEFGNIADNYLTSSTPE-------LSFLSSLTNCKKLKVLIVTGNPLDGILPKSIG  351 (823)
Q Consensus       279 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~-------~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~  351 (823)
                      |+.+.+..+ ++.+....|..+.+++.+.+..+........       ......+..+..+..+.+..+. .......+.
T Consensus       137 l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~f~  214 (379)
T 4h09_A          137 VKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTEFTIPSTV-KTVTAYGFS  214 (379)
T ss_dssp             CCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSEEECCTTC-CEECTTTTT
T ss_pred             eeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceeccccccccccccccccce-eEEeecccc
Confidence            555554433 3334445566666666555544332211000       0011122223333333322211 111122222


Q ss_pred             ccccccceEEecCCcceeccCccccCcccccEEEcccCcCCCCchhcccccCCCCEEEccCCCCCCcchHhhhcCCCCCE
Q 045449          352 NFSLSLETILMANCSISGNIPQVVGNLSNLLVLELGGNNLTGPIPVTFSQLQTLQAFDLTRNKLAGPITDELCHLARLHS  431 (823)
Q Consensus       352 ~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  431 (823)
                      .. .+|+.+.+..+ ++.....+|.++..|+.+.+..+ ++..-...|.++.+|+.+.+..+ ++......|.++.+|+.
T Consensus       215 ~~-~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~  290 (379)
T 4h09_A          215 YG-KNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTK  290 (379)
T ss_dssp             TC-SSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCE
T ss_pred             cc-cccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccccccc
Confidence            22 34444444332 33333445555555555555443 33233344555555555555432 33233334555555555


Q ss_pred             EEcccCcCcccccccccCCCCCCeEeccCCccccccchhhhccCCCcEEecc
Q 045449          432 LVLQGNKFSGSIPSCLGNLTSVRVLYLGLNIFTSVLSSTIWNLKDILFIDVS  483 (823)
Q Consensus       432 L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs  483 (823)
                      +++.++.++..-..+|.++++|+.++|..+ ++.+-..+|.++.+|+.+.+.
T Consensus       291 i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip  341 (379)
T 4h09_A          291 VVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYP  341 (379)
T ss_dssp             EEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred             ccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEEC
Confidence            555555555444445555555555555433 444334455555555555554

>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A

Probab=98.79  E-value=3.7e-09  Score=113.97  Aligned_cols=46  Identities=17%  Similarity=0.213  Sum_probs=40.7

Q ss_pred             HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCC----------cEEEeeccccccc
Q 045449          678 IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDM----------VAHISDFGIAKLL  723 (823)
Q Consensus       678 ~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~----------~~kl~DfGla~~~  723 (823)
                      ++.|++.+|+++|+.|||||||||.|||+++++          .+.|+||+.+...
T Consensus       210 l~~qll~~l~~lH~~gIVHrDLKp~NILl~~dgd~~d~~~~~~~~~iID~~Q~V~~  265 (397)
T 4gyi_A          210 LYADLIALILRLAKHGLIHGDFNEFNILIREEKDAEDPSSITLTPIIIXFPQMVSM  265 (397)
T ss_dssp             HHHHHHHHHHHHHHTTEECSCCSTTSEEEEEEECSSCTTSEEEEEEECCCTTCEET
T ss_pred             HHHHHHHHHHHHHHCCCcCCCCCHHHEEEeCCCCcccccccccceEEEEeCCcccC
Confidence            568999999999999999999999999998766          4899999987654

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.78  E-value=8.5e-08  Score=105.01  Aligned_cols=148  Identities=16%  Similarity=0.147  Sum_probs=91.0

Q ss_pred             cCccccCCCCCCeEEeecccccccCCCccCCCcccCcccccCccccCCCCcccccccccCCCCceEEEeecCCCCccCCc
Q 045449          269 IPSSITNSSKLSDLELGENLFSGFIPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGILPK  348 (823)
Q Consensus       269 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~  348 (823)
                      ....+....+|+.+.+..+ +..+...+|.++..|+.+.+..+ ++.+     ...+|.++.+|+.+.+..+ +...-..
T Consensus       209 ~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I-----~~~aF~~~~~l~~i~l~~~-i~~i~~~  280 (379)
T 4h09_A          209 TAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSI-----GSFLLQNCTALKTLNFYAK-VKTVPYL  280 (379)
T ss_dssp             CTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEE-----CTTTTTTCTTCCEEEECCC-CSEECTT
T ss_pred             eecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEe-----Cccccceeehhcccccccc-ceecccc
Confidence            3444555556666665543 33344555666666666666544 3322     1235666667777766543 4444445


Q ss_pred             cccccccccceEEecCCcceeccCccccCcccccEEEcccCcCCCCchhcccccCCCCEEEccCCCCCCcchHhhhcCC
Q 045449          349 SIGNFSLSLETILMANCSISGNIPQVVGNLSNLLVLELGGNNLTGPIPVTFSQLQTLQAFDLTRNKLAGPITDELCHLA  427 (823)
Q Consensus       349 ~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~  427 (823)
                      .|.++ .+|+.+.+.++.++.....+|.++.+|+.++|..+ ++..-..+|.++.+|+.+.+..+ ++..-...|.++.
T Consensus       281 aF~~c-~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~  356 (379)
T 4h09_A          281 LCSGC-SNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSS  356 (379)
T ss_dssp             TTTTC-TTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSS
T ss_pred             ccccc-cccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCC
Confidence            56666 57777777777777667778888888888888654 55344557888888888888654 5544455566654

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.58  E-value=3.7e-08  Score=96.08  Aligned_cols=116  Identities=17%  Similarity=0.181  Sum_probs=69.7

Q ss_pred             ccccCcccccEEEcccC-cCCCC----chhcccccCCCCEEEccCCCCCCc----chHhhhcCCCCCEEEcccCcCccc-
Q 045449          373 QVVGNLSNLLVLELGGN-NLTGP----IPVTFSQLQTLQAFDLTRNKLAGP----ITDELCHLARLHSLVLQGNKFSGS-  442 (823)
Q Consensus       373 ~~~~~l~~L~~L~Ls~N-~l~g~----~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~g~-  442 (823)
                      ..+...++|++|+|++| .+...    +...+...++|++|+|++|+|...    +...+...+.|++|+|++|.|... 
T Consensus        30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g  109 (185)
T 1io0_A           30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG  109 (185)
T ss_dssp             HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred             HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence            34555667777777777 66532    233455566777777777777643    223344456677777777777643 


Q ss_pred             ---ccccccCCCCCCeEec--cCCcccccc----chhhhccCCCcEEeccccccc
Q 045449          443 ---IPSCLGNLTSVRVLYL--GLNIFTSVL----SSTIWNLKDILFIDVSSNFLD  488 (823)
Q Consensus       443 ---~p~~~~~l~~L~~L~L--s~N~l~~~~----p~~~~~l~~L~~LdLs~N~l~  488 (823)
                         +...+...++|++|+|  ++|.++...    ...+...+.|+.|+|++|.+.
T Consensus       110 ~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          110 ILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence               3445555666777777  667666542    233344466666666666654

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.58  E-value=7.3e-09  Score=106.29  Aligned_cols=79  Identities=19%  Similarity=0.199  Sum_probs=38.7

Q ss_pred             cCCCCCEEEcccCcCcc--cccccccCCCCCCeEeccCCccccccchhhhccC--CCcEEeccccccccccCc-------
Q 045449          425 HLARLHSLVLQGNKFSG--SIPSCLGNLTSVRVLYLGLNIFTSVLSSTIWNLK--DILFIDVSSNFLDGPLSL-------  493 (823)
Q Consensus       425 ~l~~L~~L~Ls~N~l~g--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~--~L~~LdLs~N~l~g~~p~-------  493 (823)
                      ++++|+.|+|++|+|++  .+|..+..+++|+.|+|++|+|++.  ..+..+.  .|+.|+|++|.+++.+|.       
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~  245 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA  245 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence            34444444444444444  2334444445555555555555443  2222233  556666666666655441       


Q ss_pred             cccCCCCCcEEE
Q 045449          494 DIGNLKVVIGLD  505 (823)
Q Consensus       494 ~~~~l~~L~~L~  505 (823)
                      .+..++.|+.||
T Consensus       246 il~~~P~L~~LD  257 (267)
T 3rw6_A          246 IRERFPKLLRLD  257 (267)
T ss_dssp             HHHHCTTCCEES
T ss_pred             HHHHCcccCeEC
Confidence            245566666665

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.55  E-value=2.2e-08  Score=102.74  Aligned_cols=80  Identities=19%  Similarity=0.293  Sum_probs=45.3

Q ss_pred             ccCCCCEEEccCCCCCC--cchHhhhcCCCCCEEEcccCcCcccccccccCCC--CCCeEeccCCccccccc-------h
Q 045449          401 QLQTLQAFDLTRNKLAG--PITDELCHLARLHSLVLQGNKFSGSIPSCLGNLT--SVRVLYLGLNIFTSVLS-------S  469 (823)
Q Consensus       401 ~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~--~L~~L~Ls~N~l~~~~p-------~  469 (823)
                      ++++|+.|+|++|+|++  .+|..+..+++|+.|+|++|+|++.  ..+..+.  +|++|+|++|.+++.+|       .
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~  245 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA  245 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence            45555555555555555  3334455556666666666666543  2233333  66666666666665444       3


Q ss_pred             hhhccCCCcEEec
Q 045449          470 TIWNLKDILFIDV  482 (823)
Q Consensus       470 ~~~~l~~L~~LdL  482 (823)
                      .+..+++|+.||-
T Consensus       246 il~~~P~L~~LDg  258 (267)
T 3rw6_A          246 IRERFPKLLRLDG  258 (267)
T ss_dssp             HHHHCTTCCEESS
T ss_pred             HHHHCcccCeECC
Confidence            4667777877773

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.52  E-value=4.8e-08  Score=95.25  Aligned_cols=118  Identities=9%  Similarity=0.161  Sum_probs=94.2

Q ss_pred             chhcccccCCCCEEEccCC-CCCCc----chHhhhcCCCCCEEEcccCcCccc----ccccccCCCCCCeEeccCCcccc
Q 045449          395 IPVTFSQLQTLQAFDLTRN-KLAGP----ITDELCHLARLHSLVLQGNKFSGS----IPSCLGNLTSVRVLYLGLNIFTS  465 (823)
Q Consensus       395 ~p~~~~~l~~L~~L~Ls~N-~l~~~----~p~~~~~l~~L~~L~Ls~N~l~g~----~p~~~~~l~~L~~L~Ls~N~l~~  465 (823)
                      +...+...++|++|+|++| .+...    +...+...++|++|+|++|.|...    +...+...++|++|+|++|.++.
T Consensus        28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~  107 (185)
T 1io0_A           28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG  107 (185)
T ss_dssp             HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred             HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence            4455677899999999999 98753    344456678999999999999753    34556667899999999999987


Q ss_pred             c----cchhhhccCCCcEEec--cccccccc----cCccccCCCCCcEEEcccCCCC
Q 045449          466 V----LSSTIWNLKDILFIDV--SSNFLDGP----LSLDIGNLKVVIGLDFSRNNLS  512 (823)
Q Consensus       466 ~----~p~~~~~l~~L~~LdL--s~N~l~g~----~p~~~~~l~~L~~L~ls~N~l~  512 (823)
                      .    +...+...+.|++|+|  ++|.++..    +...+...+.|+.|+|++|.+.
T Consensus       108 ~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          108 SGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            5    4566777889999999  88999875    3445666689999999999876

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.41  E-value=9.8e-05  Score=70.09  Aligned_cols=82  Identities=10%  Similarity=0.117  Sum_probs=38.5

Q ss_pred             cccEEEcccCcCCCCchhcccccCCCCEEEccCCC-CCCcchHhhhcC----CCCCEEEcccCc-CcccccccccCCCCC
Q 045449          380 NLLVLELGGNNLTGPIPVTFSQLQTLQAFDLTRNK-LAGPITDELCHL----ARLHSLVLQGNK-FSGSIPSCLGNLTSV  453 (823)
Q Consensus       380 ~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l----~~L~~L~Ls~N~-l~g~~p~~~~~l~~L  453 (823)
                      +|+.||++++.++..--..+.++++|+.|+|+++. ++..--..++.+    ++|++|+|+++. ++..--..+..+++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L  141 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL  141 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence            45555555555543333334455555555555553 443322233332    245555555543 443333334445555


Q ss_pred             CeEeccCC
Q 045449          454 RVLYLGLN  461 (823)
Q Consensus       454 ~~L~Ls~N  461 (823)
                      +.|+|+++
T Consensus       142 ~~L~L~~c  149 (176)
T 3e4g_A          142 KYLFLSDL  149 (176)
T ss_dssp             CEEEEESC
T ss_pred             CEEECCCC
Confidence            55555554

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.31  E-value=0.00011  Score=69.75  Aligned_cols=83  Identities=14%  Similarity=0.078  Sum_probs=48.8

Q ss_pred             CCCCEEEccCCCCCCcchHhhhcCCCCCEEEcccCc-CcccccccccCC----CCCCeEeccCC-ccccccchhhhccCC
Q 045449          403 QTLQAFDLTRNKLAGPITDELCHLARLHSLVLQGNK-FSGSIPSCLGNL----TSVRVLYLGLN-IFTSVLSSTIWNLKD  476 (823)
Q Consensus       403 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~-l~g~~p~~~~~l----~~L~~L~Ls~N-~l~~~~p~~~~~l~~  476 (823)
                      ..|+.|||+++.++..--..+.++++|+.|+|+++. ++..--..+..+    ++|+.|+|+++ ++|..--..+..+++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            457777777777765544555667777777777764 554333334443    25666666665 355544444555566


Q ss_pred             CcEEecccc
Q 045449          477 ILFIDVSSN  485 (823)
Q Consensus       477 L~~LdLs~N  485 (823)
                      |+.|++++.
T Consensus       141 L~~L~L~~c  149 (176)
T 3e4g_A          141 LKYLFLSDL  149 (176)
T ss_dssp             CCEEEEESC
T ss_pred             CCEEECCCC
Confidence            666666655

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.29  E-value=0.00024  Score=68.70  Aligned_cols=86  Identities=8%  Similarity=0.100  Sum_probs=44.6

Q ss_pred             cCcccccEEEcccC-cCCCC----chhcccccCCCCEEEccCCCCCCc----chHhhhcCCCCCEEEcccCcCcccc---
Q 045449          376 GNLSNLLVLELGGN-NLTGP----IPVTFSQLQTLQAFDLTRNKLAGP----ITDELCHLARLHSLVLQGNKFSGSI---  443 (823)
Q Consensus       376 ~~l~~L~~L~Ls~N-~l~g~----~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~g~~---  443 (823)
                      .+-+.|++|+|++| ++...    +-..+..-+.|+.|+|++|+|...    +...+..-+.|+.|+|++|.|...-   
T Consensus        38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a  117 (197)
T 1pgv_A           38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR  117 (197)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence            34455666666664 55421    233444556666666666666532    2222334456666666666665332   


Q ss_pred             -cccccCCCCCCeEeccCC
Q 045449          444 -PSCLGNLTSVRVLYLGLN  461 (823)
Q Consensus       444 -p~~~~~l~~L~~L~Ls~N  461 (823)
                       -..+..-+.|+.|+|++|
T Consensus       118 la~aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A          118 LLRSTLVTQSIVEFKADNQ  136 (197)
T ss_dssp             HHHHTTTTCCCSEEECCCC
T ss_pred             HHHHHhhCCceeEEECCCC
Confidence             223344455666666543

>3tm0_A Aminoglycoside 3'-phosphotransferase; protein kinase, phosphorylation, transferase-antibiotic COMP; HET: ANP B31; 2.10A {Enterococcus faecalis} SCOP: d.144.1.6 PDB: 2b0q_A* 1l8t_A* 3q2j_A* 1j7i_A* 1j7u_A* 3h8p_A* 1j7l_A* 2bkk_A*

Probab=97.15  E-value=0.00013  Score=74.87  Aligned_cols=31  Identities=26%  Similarity=0.398  Sum_probs=26.6

Q ss_pred             CCEEeccCCCCCEEeCCCCcEEEeecccccc
Q 045449          692 IPIIHCDLKPSNVLLDEDMVAHISDFGIAKL  722 (823)
Q Consensus       692 ~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~  722 (823)
                      ..++|+|++|.||+++++..+.|+||+.+..
T Consensus       183 ~~l~HgDl~~~Nil~~~~~~~~lIDwe~a~~  213 (263)
T 3tm0_A          183 LVFSHGDLGDSNIFVKDGKVSGFIDLGRSGR  213 (263)
T ss_dssp             EEEECSSCCTTSEEEETTEEEEECCCTTCEE
T ss_pred             ceEECCCCCcCcEEEECCcEEEEEEchhccc
Confidence            5599999999999998766678999997764

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.02  E-value=0.00051  Score=66.42  Aligned_cols=113  Identities=14%  Similarity=0.215  Sum_probs=79.5

Q ss_pred             cccccCCCCEEEccCC-CCCCc----chHhhhcCCCCCEEEcccCcCcccc----cccccCCCCCCeEeccCCccccccc
Q 045449          398 TFSQLQTLQAFDLTRN-KLAGP----ITDELCHLARLHSLVLQGNKFSGSI----PSCLGNLTSVRVLYLGLNIFTSVLS  468 (823)
Q Consensus       398 ~~~~l~~L~~L~Ls~N-~l~~~----~p~~~~~l~~L~~L~Ls~N~l~g~~----p~~~~~l~~L~~L~Ls~N~l~~~~p  468 (823)
                      .+.+-+.|+.|+|++| +|...    +...+..-+.|+.|+|++|.|...-    ...+..-+.|+.|+|++|.|+..--
T Consensus        36 ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga  115 (197)
T 1pgv_A           36 LREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELL  115 (197)
T ss_dssp             HHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHH
T ss_pred             HHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHH
Confidence            3455678999999986 77642    3344566688999999999997543    3345566889999999999986533


Q ss_pred             h----hhhccCCCcEEecccc---cccc----ccCccccCCCCCcEEEcccCC
Q 045449          469 S----TIWNLKDILFIDVSSN---FLDG----PLSLDIGNLKVVIGLDFSRNN  510 (823)
Q Consensus       469 ~----~~~~l~~L~~LdLs~N---~l~g----~~p~~~~~l~~L~~L~ls~N~  510 (823)
                      .    .+..-+.|+.|+|++|   .+..    .+...+..-+.|..|+++.|.
T Consensus       116 ~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~  168 (197)
T 1pgv_A          116 ARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  168 (197)
T ss_dssp             HHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence            3    4445567999999865   3343    234455566788888887654

>1nd4_A Aminoglycoside 3'-phosphotransferase; protein kinase, ATPase, kanamycin; HET: KAN; 2.10A {Klebsiella pneumoniae} SCOP: d.144.1.6

Probab=97.00  E-value=0.00023  Score=72.70  Aligned_cols=31  Identities=16%  Similarity=0.286  Sum_probs=27.0

Q ss_pred             CCEEeccCCCCCEEeCCCCcEEEeecccccc
Q 045449          692 IPIIHCDLKPSNVLLDEDMVAHISDFGIAKL  722 (823)
Q Consensus       692 ~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~  722 (823)
                      ..++|+|++|.||+++++..++|+|||.+..
T Consensus       184 ~~l~HgDl~~~Nil~~~~~~~~liD~~~a~~  214 (264)
T 1nd4_A          184 LVVTHGDACLPNIMVENGRFSGFIDCGRLGV  214 (264)
T ss_dssp             EEEECSSCCGGGEEEETTEEEEECCCTTCEE
T ss_pred             eEEECCCCCCCcEEEECCcEEEEEcchhccc
Confidence            3499999999999998877778999998765

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.69  E-value=0.0031  Score=56.80  Aligned_cols=55  Identities=15%  Similarity=0.179  Sum_probs=24.6

Q ss_pred             EEEcCCCCCc-cccCcccCCCCCCcEEEccCCCCCCCCCCCCCCCCCCCEEECCCCcC
Q 045449           56 GLNISSFNLQ-GTITPQLGNLSSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQL  112 (823)
Q Consensus        56 ~L~L~~~~l~-g~~~~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l  112 (823)
                      .++.++++++ ..+|..+-  .+|++|||++|+|+...+..|..+++|++|+|++|.+
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence            4555555554 23333221  2345555555555433334444444444444444443

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.46  E-value=0.0041  Score=56.06  Aligned_cols=56  Identities=14%  Similarity=0.107  Sum_probs=28.1

Q ss_pred             EEEcccCcCc-ccccccccCCCCCCeEeccCCccccccchhhhccCCCcEEeccccccc
Q 045449          431 SLVLQGNKFS-GSIPSCLGNLTSVRVLYLGLNIFTSVLSSTIWNLKDILFIDVSSNFLD  488 (823)
Q Consensus       431 ~L~Ls~N~l~-g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~  488 (823)
                      .++.+++.|+ ..+|..+.  ++|+.|+|++|+|+.+.+..|..+++|+.|+|++|.+.
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            4455555554 23343221  23555555555555555555555555555555555554

>3sg8_A APH(2'')-ID; antibiotic resistance enzyme, transferase, aminoglycoside, phosphorylation, transferase-antibiotic complex; HET: TOY; 1.80A {Enterococcus casseliflavus} PDB: 3sg9_A* 3n4v_A 3n4t_A 3n4u_A 3r81_A* 3r80_A* 3r7z_A* 3r82_A* 3vcq_A* 4dbx_A 4de4_A* 4dfb_A* 4dfu_A* 4dt9_A* 4dt8_A* 4dtb_A* 3sgc_A 4dta_A* 3lzh_A

Probab=96.11  E-value=0.00038  Score=73.17  Aligned_cols=83  Identities=23%  Similarity=0.271  Sum_probs=50.4

Q ss_pred             CCEEeccCCCCCEEeCC--CCcEEEeecccccccCCCCcccccccc------------ccCCCcCc-ccccCCCcccccc
Q 045449          692 IPIIHCDLKPSNVLLDE--DMVAHISDFGIAKLLSGEDQLSKQTQT------------LATIGYMA-PEYGTKGRVSTRG  756 (823)
Q Consensus       692 ~~ivHrdlk~~NiLl~~--~~~~kl~DfGla~~~~~~~~~~~~~~~------------~gt~~y~a-PE~~~~~~~~~~~  756 (823)
                      ..++|+|++|.||++++  ...+.|+||+.+..-............            ....++.. |+...  ......
T Consensus       191 ~~~~HgD~~~~N~l~~~~~~~~~~~iD~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~l~~Y~~~~~~~~~~--r~~~~~  268 (304)
T 3sg8_A          191 PCLIHNDFSSDHILFDTEKNTICGIIDFGDAAISDPDNDFISLMEDDEEYGMEFVSKILNHYKHKDIPTVLE--KYRMKE  268 (304)
T ss_dssp             CEEECSCCCGGGEEEETTTTEEEEECCCTTCEEECTTHHHHTTCCTTTSCCHHHHHHHHHHHTCSCHHHHHH--HHHHHH
T ss_pred             ceeEeCCCCcccEEEeCCCCCEEEEEeCCCCccCChHHHHHHHHhhccccCHHHHHHHHHHcCCCCcHHHHH--HHHHHH
Confidence            56899999999999997  567889999998764322111000000            00001111 22111  112225


Q ss_pred             ceehhhhhhccccCCCCCcC
Q 045449          757 DVCSFGIISGGKETRSMTVG  776 (823)
Q Consensus       757 Dv~S~Gvv~~~~~~~~~~~~  776 (823)
                      +.|++|++++.+.+|+.++.
T Consensus       269 ~~~~l~~~~~~~~~g~~~~~  288 (304)
T 3sg8_A          269 KYWSFEKIIYGKEYGYMDWY  288 (304)
T ss_dssp             HHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHH
Confidence            88999999999999987763

>3dxp_A Putative acyl-COA dehydrogenase; protein kinase-like fold, structural genomics, joint center structural genomics, JCSG; 2.32A {Ralstonia eutropha JMP134}

Probab=92.59  E-value=0.11  Score=55.57  Aligned_cols=32  Identities=22%  Similarity=0.424  Sum_probs=27.4

Q ss_pred             CCCEEeccCCCCCEEeCCCC--cEEEeecccccc
Q 045449          691 SIPIIHCDLKPSNVLLDEDM--VAHISDFGIAKL  722 (823)
Q Consensus       691 ~~~ivHrdlk~~NiLl~~~~--~~kl~DfGla~~  722 (823)
                      ...++|+|+++.||+++.++  .+.|+||+.+..
T Consensus       215 ~~~lvHgD~~~~Nil~~~~~~~v~~viDwe~a~~  248 (359)
T 3dxp_A          215 LTSIVHGDYRLDNLMFHPTEPRVLAVLDWELSTL  248 (359)
T ss_dssp             CCEEECSSCSGGGEEECSSSSCEEEECCCTTCEE
T ss_pred             CceEEeCCCCCCcEEEeCCCCcEEEEECcccccc
Confidence            36799999999999998765  368999999875

>2q83_A YTAA protein; 2635576, structural genomics, joint center for structu genomics, JCSG, protein structure initiative, PSI-2, transf; HET: ADN CIT UNL; 2.50A {Bacillus subtilis}

Probab=89.95  E-value=0.23  Score=52.32  Aligned_cols=33  Identities=24%  Similarity=0.315  Sum_probs=29.3

Q ss_pred             CCCCEEeccCCCCCEEeCCCCcEEEeecccccc
Q 045449          690 HSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKL  722 (823)
Q Consensus       690 h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~  722 (823)
                      ....++|+|+++.||+++.++.+.|+||+.+..
T Consensus       220 ~~~~l~HgD~~~~Nil~~~~~~~~lIDfe~a~~  252 (346)
T 2q83_A          220 KSPNLCHQDYGTGNTLLGENEQIWVIDLDTVSF  252 (346)
T ss_dssp             HSCCEECSSCSTTSEEECGGGCEEECCCTTCEE
T ss_pred             ccCceecCCCCcccEEEeCCCcEEEEehhhccc
Confidence            357899999999999998788899999998864

>2pyw_A Uncharacterized protein; 5-methylthioribose kinase, plant methionine recycling, refol transferase; HET: SR1 ADP; 1.90A {Arabidopsis thaliana}

Probab=89.43  E-value=0.26  Score=53.91  Aligned_cols=33  Identities=21%  Similarity=0.327  Sum_probs=29.3

Q ss_pred             CCCCEEeccCCCCCEEeCCCCcEEEeeccccccc
Q 045449          690 HSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLL  723 (823)
Q Consensus       690 h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~  723 (823)
                      +...++|+|+++.|||++.++ ++++||+.+..-
T Consensus       230 ~~~~liHGDl~~~Nil~~~~~-~~lID~e~a~~G  262 (420)
T 2pyw_A          230 RAQALIHGDLHTGSVMVTQDS-TQVIDPEFSFYG  262 (420)
T ss_dssp             BCCEEECSCCSGGGEEECSSC-EEECCCTTCEEE
T ss_pred             CCCeEEecCCCCCcEEEeCCC-CEEEeCcccccC
Confidence            678899999999999998776 999999988763

>4gkh_A Aminoglycoside 3'-phosphotransferase APHA1-IAB; pyrazolopyrimidine, 1-Na-PP1, bumped kinase inhibitor, BKI, kinase inhibitor; HET: KAN 0J9; 1.86A {Acinetobacter baumannii} PDB: 4feu_A* 4few_A* 4fex_A* 4fev_A* 4gki_A* 4ej7_A* 3r78_A*

Probab=84.16  E-value=0.49  Score=47.93  Aligned_cols=34  Identities=21%  Similarity=0.305  Sum_probs=28.6

Q ss_pred             CCCCEEeccCCCCCEEeCCCCcEEEeeccccccc
Q 045449          690 HSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLL  723 (823)
Q Consensus       690 h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~  723 (823)
                      +...++|+|+.+.|||+++++.+-|+||+.+..-
T Consensus       191 ~~~~l~HGDl~~~Nil~~~~~~~~viDwe~a~~g  224 (272)
T 4gkh_A          191 PDSVVTHGDFSLDNLIFDEGKLIGCIDVGRVGIA  224 (272)
T ss_dssp             CCEEEECSCCCTTSEEEETTEEEEECCCTTCEEE
T ss_pred             CCcEEEcCCCCCCeEEEECCeEEEEEECcccccC
Confidence            3456899999999999998877889999988653

>2ppq_A HSK, HK, homoserine kinase; structural genomics, MCSG, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: d.144.1.6

Probab=83.46  E-value=0.58  Score=48.78  Aligned_cols=32  Identities=31%  Similarity=0.358  Sum_probs=27.7

Q ss_pred             CCCEEeccCCCCCEEeCCCCcEEEeecccccc
Q 045449          691 SIPIIHCDLKPSNVLLDEDMVAHISDFGIAKL  722 (823)
Q Consensus       691 ~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~  722 (823)
                      ..+++|+|+.+.||+++++..+.|+||+.+..
T Consensus       186 ~~~liHgDl~~~Nil~~~~~~~~lIDf~~a~~  217 (322)
T 2ppq_A          186 PAGVIHADLFQDNVFFLGDELSGLIDFYFACN  217 (322)
T ss_dssp             CEEEECSCCCGGGEEEETTEEEEECCCTTCEE
T ss_pred             CcccCCCCCCccCEEEeCCceEEEecchhccC
Confidence            46799999999999999876678999998764

>3csv_A Aminoglycoside phosphotransferase; YP_614837.1, phosphotransferase enzyme family, structural genomics, JOIN for structural genomics, JCSG; HET: MSE; 2.15A {Silicibacter SP}

Probab=82.84  E-value=0.95  Score=47.44  Aligned_cols=34  Identities=26%  Similarity=0.315  Sum_probs=29.3

Q ss_pred             CCCCEEeccCCCCCEEeCCC----CcEEEeeccccccc
Q 045449          690 HSIPIIHCDLKPSNVLLDED----MVAHISDFGIAKLL  723 (823)
Q Consensus       690 h~~~ivHrdlk~~NiLl~~~----~~~kl~DfGla~~~  723 (823)
                      +...++|+|+.+.||+++.+    ..+.|+||+.+..-
T Consensus       181 ~~~~lvHgD~~~~Nil~~~~~~~~~~~~lIDf~~a~~G  218 (333)
T 3csv_A          181 GDMVFVHRDFHAQNLLWLPEREGLARVGVIDFQDAKLG  218 (333)
T ss_dssp             SCCEEECSCCSGGGEEECTTSCGGGGEEECCCTTCEEE
T ss_pred             CCCeeEeCCcCcccEEeccCcCCCCCeEEEeCCCcCcC
Confidence            45689999999999999874    68999999988764

>3f7w_A Putative fructosamine-3-kinase; YP_290396.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI-2; 1.85A {Thermobifida fusca YX}

Probab=82.41  E-value=0.46  Score=48.78  Aligned_cols=25  Identities=40%  Similarity=0.403  Sum_probs=21.0

Q ss_pred             CCCEEeccCCCCCEEeCCCCcEEEee
Q 045449          691 SIPIIHCDLKPSNVLLDEDMVAHISD  716 (823)
Q Consensus       691 ~~~ivHrdlk~~NiLl~~~~~~kl~D  716 (823)
                      .+.+||+|+.+.||+++.++ +.+.|
T Consensus       187 ~p~LvHGDlw~gNvl~~~~g-~~~iD  211 (288)
T 3f7w_A          187 PPARIHGDLWNGNVLWQDDG-AVVID  211 (288)
T ss_dssp             CCEEECSCCSGGGEEEETTE-EEECS
T ss_pred             CCeeeecCCCCCcEEEcCCC-eEEEe
Confidence            46799999999999999887 45666

>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}

Probab=82.12  E-value=0.78  Score=31.81  Aligned_cols=6  Identities=0%  Similarity=-0.097  Sum_probs=2.3

Q ss_pred             HHhhhh
Q 045449          589 TLKWKL  594 (823)
Q Consensus       589 ~~~~~~  594 (823)
                      +++|++
T Consensus        31 ~~~~RR   36 (44)
T 2l2t_A           31 AVYVRR   36 (44)
T ss_dssp             HHHHHT
T ss_pred             HHHhhh
Confidence            333443

>3tdw_A Gentamicin resistance protein; kinase, phosphoryl transfer, antibiotic resistance, transfer; HET: GDP; 1.70A {Enterococcus gallinarum} PDB: 3tdv_A*

Probab=81.23  E-value=1  Score=46.67  Aligned_cols=34  Identities=32%  Similarity=0.432  Sum_probs=28.2

Q ss_pred             CCCCEEeccCCCCCEEeCC---CCc-EEEeeccccccc
Q 045449          690 HSIPIIHCDLKPSNVLLDE---DMV-AHISDFGIAKLL  723 (823)
Q Consensus       690 h~~~ivHrdlk~~NiLl~~---~~~-~kl~DfGla~~~  723 (823)
                      ....++|+|+++.||+++.   ++. +.|+||+.+..-
T Consensus       188 ~~~~~~HgD~~~~N~l~~~~~~~~~~~~~iD~~~a~~g  225 (306)
T 3tdw_A          188 YTPRLIHGDLSPDHFLTNLNSRQTPLTGIIDFGDAAIS  225 (306)
T ss_dssp             CCCEEECSCCSGGGEEECTTCSSCCEEEECCCTTCEEE
T ss_pred             CCCeeEeCCCCcccEEEecCCCCCceEEEEehhhcCCC
Confidence            5678999999999999987   355 589999988764

>3ats_A Putative uncharacterized protein; hypothetical protein, putative aminoglycoside phosphortransf transferase; 1.67A {Mycobacterium tuberculosis} PDB: 3att_A*

Probab=80.03  E-value=0.74  Score=48.83  Aligned_cols=32  Identities=19%  Similarity=0.249  Sum_probs=27.8

Q ss_pred             CCCEEeccCCCCCEEeCCCCcEEEeecccccc
Q 045449          691 SIPIIHCDLKPSNVLLDEDMVAHISDFGIAKL  722 (823)
Q Consensus       691 ~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~  722 (823)
                      ...++|+|+.+.||+++++..+.|+||+.+..
T Consensus       221 ~~~l~HgDl~~~Nil~~~~~~~~vIDwe~a~~  252 (357)
T 3ats_A          221 EPVLLWGDARVGNVLYRDFQPVAVLDWEMVAL  252 (357)
T ss_dssp             CCEEECSSCSGGGEEEETTEEEEECCGGGCEE
T ss_pred             CceEEeCCCCCCeEEEeCCcEEEEEccccccc
Confidence            56899999999999999655679999998875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	823
d1jpaa_	299	d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mou	3e-27
d1uwha_	276	d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens)	5e-27
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-26
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	7e-16
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-13
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-08
d1fmka3	285	d.144.1.7 (A:249-533) c-src tyrosine kinase {Human	7e-26
d1s9ja_	322	d.144.1.7 (A:) Dual specificity mitogen-activated	2e-25
d1u59a_	285	d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Hum	8e-24
d1qpca_	272	d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Hom	1e-23
d1uu3a_	288	d.144.1.7 (A:) 3-phosphoinositide dependent protei	2e-23
d1opja_	287	d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mou	3e-23
d1mqba_	283	d.144.1.7 (A:) epha2 receptor tyrosine kinase {Hum	3e-23
d1sm2a_	263	d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Hu	7e-23
d1byga_	262	d.144.1.7 (A:) Carboxyl-terminal src kinase (csk)	1e-22
d2jfla1	288	d.144.1.7 (A:21-308) STE20-like serine/threonine-p	3e-22
d1xbba_	277	d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human	4e-22
d1k2pa_	258	d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Hum	5e-22
d1nvra_	271	d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {	5e-22
d1yhwa1	293	d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [	8e-22
d1xkka_	317	d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-	1e-21
d1u5ra_	309	d.144.1.7 (A:) Serine/threonine protein kinase TAO	1e-21
d2j4za1	263	d.144.1.7 (A:126-388) Aurora-related kinase 1 (aur	2e-21
d2java1	269	d.144.1.7 (A:3-271) Serine/threonine-protein kinas	2e-21
d1t4ha_	270	d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sa	4e-21
d1fota_	316	d.144.1.7 (A:) cAMP-dependent PK, catalytic subuni	5e-21
d1r0pa_	311	d.144.1.7 (A:) Hepatocyte growth factor receptor,	8e-21
d1rjba_	325	d.144.1.7 (A:) Fl cytokine receptor {Human (Homo s	2e-20
d1lufa_	301	d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus n	5e-20
d1pmea_	345	d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapien	9e-20
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	9e-20
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-18
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	7e-13
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	7e-12
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-10
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	7e-09
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-08
d1u46a_	273	d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Hum	1e-19
d1vjya_	303	d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human	1e-19
d1koaa2	350	d.144.1.7 (A:5915-6264) Twitchin, kinase domain {C	1e-19
d1o6ya_	277	d.144.1.7 (A:) Mycobacterial protein kinase PknB,	4e-19
d1mp8a_	273	d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Huma	4e-19
d1koba_	352	d.144.1.7 (A:) Twitchin, kinase domain {California	8e-18
d1p4oa_	308	d.144.1.7 (A:) Insulin-like growth factor 1 recept	2e-17
d1fvra_	309	d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [	2e-17
d1gz8a_	298	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (H	3e-17
d1ywna1	299	d.144.1.7 (A:818-1166) Vascular endothelial growth	3e-17
d1o6la_	337	d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sap	7e-17
d1fgka_	299	d.144.1.7 (A:) Fibroblast growth factor receptor 1	7e-17
d1ob3a_	286	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmod	8e-17
d1omwa3	364	d.144.1.7 (A:186-549) G-protein coupled receptor k	3e-16
d1xjda_	320	d.144.1.7 (A:) Protein kinase C, theta type {Human	6e-16
d1unla_	292	d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (H	6e-16
d1ckia_	299	d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus n	6e-16
d1t46a_	311	d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens	6e-16
d1csna_	293	d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast	7e-16
d1rdqe_	350	d.144.1.7 (E:) cAMP-dependent PK, catalytic subuni	8e-16
d1jksa_	293	d.144.1.7 (A:) Death-associated protein kinase, Da	9e-16
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-15
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-13
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-09
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-07
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-07
d1ua2a_	299	d.144.1.7 (A:) Cell division protein kinase 7, CDK	1e-15
d1blxa_	305	d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (H	5e-15
d3blha1	318	d.144.1.7 (A:8-325) Cell division protein kinase 9	6e-15
d1a06a_	307	d.144.1.7 (A:) Calmodulin-dependent protein kinase	7e-15
d1tkia_	321	d.144.1.7 (A:) Titin, kinase domain {Human (Homo s	9e-14
d2ozaa1	335	d.144.1.7 (A:51-385) MAP kinase activated protein	1e-13
d1cm8a_	346	d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo s	2e-13
d1phka_	277	d.144.1.7 (A:) gamma-subunit of glycogen phosphory	2e-13
d1xwsa_	273	d.144.1.7 (A:) Proto-oncogene serine/threonine-pro	2e-12
d2b1pa1	355	d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3	5e-12
d1vzoa_	322	d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5	6e-12
d1q8ya_	362	d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces	7e-12
d1q5ka_	350	d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gs	9e-12
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	3e-11
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	3e-11
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	7e-07
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-10
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-06
d2gfsa1	348	d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sa	3e-10
d3bqca1	328	d.144.1.7 (A:3-330) Protein kinase CK2, alpha subu	6e-10
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-09
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.001
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.001
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	6e-09
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	7e-08
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	6e-07
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	3e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	6e-05
d1zara2	191	d.144.1.9 (A:91-281) Rio2 serine protein kinase C-	5e-08
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	8e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.001
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.003
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	9e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	4e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.001
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.001
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.003
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.003
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	6e-06
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.003
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	3e-05
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	5e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.002
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.003
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	4e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	3e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	5e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	1e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.003
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	2e-04
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	4e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	2e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.003
d1m9la_	198	c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree	0.001

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  110 bits (275), Expect = 3e-27
 Identities = 38/219 (17%), Positives = 74/219 (33%), Gaps = 69/219 (31%)

Query: 615 IRRFSYHELLRATDRFSEN---------NLIGIG---------------NGMEVAVKVFH 650
           I  F++ +   A   F++           +IG G                 + VA+K   
Sbjct: 4   IDPFTFEDPNEAVREFAKEIDISCVKIEQVIGAGEFGEVCSGHLKLPGKREIFVAIKTLK 63

Query: 651 QQY-ERALKSFEDECEVRKRIRHRNLVK-------------------------------- 677
             Y E+  + F  E  +  +  H N++                                 
Sbjct: 64  SGYTEKQRRDFLSEASIMGQFDHPNVIHLEGVVTKSTPVMIITEFMENGSLDSFLRQNDG 123

Query: 678 ---------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQ 728
                    ++      + +   +  +H DL   N+L++ ++V  +SDFG+++ L  +  
Sbjct: 124 QFTVIQLVGMLRGIAAGMKYLADMNYVHRDLAARNILVNSNLVCKVSDFGLSRFLEDDTS 183

Query: 729 LSKQTQTL---ATIGYMAPEYGTKGRVSTRGDVCSFGII 764
               T  L     I + APE     + ++  DV S+GI+
Sbjct: 184 DPTYTSALGGKIPIRWTAPEAIQYRKFTSASDVWSYGIV 222

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 276

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  109 bits (273), Expect = 5e-27
 Identities = 45/191 (23%), Positives = 77/191 (40%), Gaps = 54/191 (28%)

Query: 628 DRFSENNLIGIGN---------GMEVAVKVFHQQY--ERALKSFEDECEVRKRIRHRNLV 676
            + +    IG G+           +VAVK+ +      + L++F++E  V ++ RH N++
Sbjct: 8   GQITVGQRIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNIL 67

Query: 677 KIISSS--------LEY--------------------------------LHFGHSIPIIH 696
             +  S         ++                                + + H+  IIH
Sbjct: 68  LFMGYSTAPQLAIVTQWCEGSSLYHHLHIIETKFEMIKLIDIARQTAQGMDYLHAKSIIH 127

Query: 697 CDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEY---GTKGRVS 753
            DLK +N+ L ED+   I DFG+A + S      +  Q   +I +MAPE      K   S
Sbjct: 128 RDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAPEVIRMQDKNPYS 187

Query: 754 TRGDVCSFGII 764
            + DV +FGI+
Sbjct: 188 FQSDVYAFGIV 198

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score =  109 bits (271), Expect = 1e-26
 Identities = 76/314 (24%), Positives = 124/314 (39%), Gaps = 21/314 (6%)

Query: 12  QALLALKAHISYDHTNLFARNWTSSTSVC--IWIGITCDVNS--HRVIGLNISSFNLQGT 67
           QALL +K  +    T     +W  +T  C   W+G+ CD ++  +RV  L++S  NL   
Sbjct: 9   QALLQIKKDLGNPTT---LSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKP 65

Query: 68  IT--PQLGNLSSLQTLDLSHN-KLSGNIPSSIFNMHTLKLLDFSDNQLFGSLSSFIFNMS 124
                 L NL  L  L +     L G IP +I  +  L  L  +   + G++  F+  + 
Sbjct: 66  YPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIK 125

Query: 125 SMTTIDLSINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEIGNLTKLKEI 184
           ++ T+D S N            +P ++S    L  +    N +SGAIP   G+ +KL   
Sbjct: 126 TLVTLDFSYNA-------LSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTS 178

Query: 185 ISTITNSTVCEIPREIGNLPYLARLALATNNLVGVVPVTIFNMSALKEISLLNNSLSGSL 244
           ++   N    +IP    NL          +  +     ++   S      +     S + 
Sbjct: 179 MTISRNRLTGKIPPTFANLNLAFVD---LSRNMLEGDASVLFGSDKNTQKIHLAKNSLAF 235

Query: 245 PSRIDLSLPNVETLNLGINSFSGTIPSSITNSSKLSDLELGENLFSGFIPNTIGNLRNLE 304
                    N+  L+L  N   GT+P  +T    L  L +  N   G IP   GNL+  +
Sbjct: 236 DLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFD 294

Query: 305 FGNIADNYLTSSTP 318
               A+N     +P
Sbjct: 295 VSAYANNKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 77.1 bits (188), Expect = 7e-16
 Identities = 68/269 (25%), Positives = 100/269 (37%), Gaps = 11/269 (4%)

Query: 149 STLSKCKQLEELNLGFNNLSGA--IPKEIGNLTKLKEIISTITNSTVCEIPREIGNLPYL 206
            T ++  ++  L+L   NL     IP  + NL  L  +     N+ V  IP  I  L  L
Sbjct: 44  DTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQL 103

Query: 207 ARLALATNNLVGVVPVTIFNMSALKEISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFS 266
             L +   N+ G +P  +  +  L  +    N+LSG+LP  I  SLPN+  +    N  S
Sbjct: 104 HYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS-SLPNLVGITFDGNRIS 162

Query: 267 GTIPSSITNSSKLSDLELGENLFSGFIPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSL 326
           G IP S  + SKL               N +       F N+   ++  S   L   +S+
Sbjct: 163 GAIPDSYGSFSKLFTSMTISR-------NRLTGKIPPTFANLNLAFVDLSRNMLEGDASV 215

Query: 327 TNCKKLKVLIVTGNPLDGILPKSIGNFSLSLETILMANCSISGNIPQVVGNLSNLLVLEL 386
                     +                S +L  + + N  I G +PQ +  L  L  L +
Sbjct: 216 LFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNV 275

Query: 387 GGNNLTGPIPVTFSQLQTLQAFDLTRNKL 415
             NNL G IP     LQ         NK 
Sbjct: 276 SFNNLCGEIP-QGGNLQRFDVSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 70.6 bits (171), Expect = 1e-13
 Identities = 61/296 (20%), Positives = 115/296 (38%), Gaps = 22/296 (7%)

Query: 263 NSFSGTIPSSITNSSKLSDLELGENLFSGF--IPNTIGNLRNLEFGNIADNYLTSSTPEL 320
            ++ G +  + T + ++++L+L          IP+++ NL  L F  I            
Sbjct: 36  RTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGP--- 92

Query: 321 SFLSSLTNCKKLKVLIVTGNPLDGILPKSIGNFSLSLETILMANCSISGNIPQVVGNLSN 380
               ++    +L  L +T   + G       +   +L T+  +  ++SG +P  + +L N
Sbjct: 93  -IPPAIAKLTQLHYLYITHTNVSGA-IPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPN 150

Query: 381 LLVLELGGNNLTGPIPVTFSQLQTLQA-FDLTRNKLAGPITDELCHLARLHSLVLQGNKF 439
           L+ +   GN ++G IP ++     L     ++RN+L G I     +     + V      
Sbjct: 151 LVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN--LNLAFVDLSRNM 208

Query: 440 SGSIPSCLGNLTSVRVLYLGLNIFTSVLSSTIWNLKDILFIDVSSNFLDGPLSLDIGNLK 499
                S L                 +     +   K++  +D+ +N + G L   +  LK
Sbjct: 209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLK 268

Query: 500 VVIGLDFSRNNLSGDIPITIGEGEIPRGGPFANLTAKSFMGNELLCGLPDLQVSPC 555
            +  L+ S NNL G         EIP+GG        ++  N+ LCG P   +  C
Sbjct: 269 FLHSLNVSFNNLCG---------EIPQGGNLQRFDVSAYANNKCLCGSP---LPAC 312

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 55.5 bits (132), Expect = 1e-08
 Identities = 17/70 (24%), Positives = 29/70 (41%), Gaps = 1/70 (1%)

Query: 76  SSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQLFGSLSSFIFNMSSMTTIDLSINR 135
            +L  LDL +N++ G +P  +  +  L  L+ S N L G +     N+        + N+
Sbjct: 244 KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302

Query: 136 LSGELPANIC 145
                P   C
Sbjct: 303 CLCGSPLPAC 312

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  105 bits (264), Expect = 7e-26
 Identities = 37/189 (19%), Positives = 73/189 (38%), Gaps = 54/189 (28%)

Query: 628 DRFSENNLIGIG-----------NGMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLV 676
           +       +G G               VA+K        + ++F  E +V K++RH  LV
Sbjct: 17  ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPG-TMSPEAFLQEAQVMKKLRHEKLV 75

Query: 677 K-----------------------------------------IISSSLEYLHFGHSIPII 695
           +                                         + +     + +   +  +
Sbjct: 76  QLYAVVSEEPIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMNYV 135

Query: 696 HCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTR 755
           H DL+ +N+L+ E++V  ++DFG+A+L+  +++ + +      I + APE    GR + +
Sbjct: 136 HRDLRAANILVGENLVCKVADFGLARLIE-DNEYTARQGAKFPIKWTAPEAALYGRFTIK 194

Query: 756 GDVCSFGII 764
            DV SFGI+
Sbjct: 195 SDVWSFGIL 203

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  105 bits (264), Expect = 2e-25
 Identities = 36/195 (18%), Positives = 60/195 (30%), Gaps = 62/195 (31%)

Query: 626 ATDRFSENNLIGIG------------NGMEVAVKVFHQQY-ERALKSFEDECEVRKRIRH 672
             D F + + +G G            +G+ +A K+ H +           E +V      
Sbjct: 4   KDDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNS 63

Query: 673 RNLVKI-------------------------------------------ISSSLEYLHFG 689
             +V                                             +   L YL   
Sbjct: 64  PYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKKAGRIPEQILGKVSIAVIKGLTYLR-- 121

Query: 690 HSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTK 749
               I+H D+KPSN+L++      + DFG++  L      S     + T  YM+PE    
Sbjct: 122 EKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLID----SMANSFVGTRSYMSPERLQG 177

Query: 750 GRVSTRGDVCSFGII 764
              S + D+ S G+ 
Sbjct: 178 THYSVQSDIWSMGLS 192

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  100 bits (249), Expect = 8e-24
 Identities = 36/168 (21%), Positives = 62/168 (36%), Gaps = 42/168 (25%)

Query: 639 GNGMEVAVKVFHQQYERA-LKSFEDECEVRKRIRHRNLVKIISSS--------LEY---- 685
              ++VA+KV  Q  E+A  +    E ++  ++ +  +V++I           +E     
Sbjct: 34  KKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQAEALMLVMEMAGGG 93

Query: 686 ----------------------------LHFGHSIPIIHCDLKPSNVLLDEDMVAHISDF 717
                                       + +      +H DL   NVLL     A ISDF
Sbjct: 94  PLHKFLVGKREEIPVSNVAELLHQVSMGMKYLEEKNFVHRDLAARNVLLVNRHYAKISDF 153

Query: 718 GIAKLLSGEDQLSKQTQTLA-TIGYMAPEYGTKGRVSTRGDVCSFGII 764
           G++K L  +D            + + APE     + S+R DV S+G+ 
Sbjct: 154 GLSKALGADDSYYTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVT 201

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]} Length = 272

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 99.0 bits (246), Expect = 1e-23
 Identities = 39/189 (20%), Positives = 72/189 (38%), Gaps = 54/189 (28%)

Query: 628 DRFSENNLIGIG-----------NGMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLV 676
           +       +G G              +VAVK   Q    +  +F  E  + K+++H+ LV
Sbjct: 13  ETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQG-SMSPDAFLAEANLMKQLQHQRLV 71

Query: 677 KIISSS--------LEYLHFG---------------------------------HSIPII 695
           ++ +           EY+  G                                      I
Sbjct: 72  RLYAVVTQEPIYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNYI 131

Query: 696 HCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTR 755
           H DL+ +N+L+ + +   I+DFG+A+L+  +++ + +      I + APE    G  + +
Sbjct: 132 HRDLRAANILVSDTLSCKIADFGLARLIE-DNEYTAREGAKFPIKWTAPEAINYGTFTIK 190

Query: 756 GDVCSFGII 764
            DV SFGI+
Sbjct: 191 SDVWSFGIL 199

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 98.9 bits (246), Expect = 2e-23
 Identities = 45/195 (23%), Positives = 74/195 (37%), Gaps = 55/195 (28%)

Query: 625 RATDRFSENNLIGIG------------NGMEVAVKVFHQQY---ERALKSFEDECEVRKR 669
           +  + F    ++G G               E A+K+  +++   E  +     E +V  R
Sbjct: 5   KRPEDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSR 64

Query: 670 IRHRNLVKIISSS----------------------------------------LEYLHFG 689
           + H   VK+  +                                         +  L + 
Sbjct: 65  LDHPFFVKLYFTFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYL 124

Query: 690 HSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTK 749
           H   IIH DLKP N+LL+EDM   I+DFG AK+LS E + ++    + T  Y++PE  T+
Sbjct: 125 HGKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANSFVGTAQYVSPELLTE 184

Query: 750 GRVSTRGDVCSFGII 764
                  D+ + G I
Sbjct: 185 KSACKSSDLWALGCI 199

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]} Length = 287

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 98.6 bits (245), Expect = 3e-23
 Identities = 40/203 (19%), Positives = 73/203 (35%), Gaps = 56/203 (27%)

Query: 616 RRFSYHELLRATDRFSENNLIGIG------------NGMEVAVKVFHQQYERALKSFEDE 663
              +Y +        +  + +G G              + VAVK   +     ++ F  E
Sbjct: 5   SSPNYDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKED-TMEVEEFLKE 63

Query: 664 CEVRKRIRHRNLVKIISS---------SLEYLHFG------------------------- 689
             V K I+H NLV+++             E++ +G                         
Sbjct: 64  AAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQ 123

Query: 690 --------HSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGY 741
                        IH DL   N L+ E+ +  ++DFG+++L++G D  +        I +
Sbjct: 124 ISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTG-DTYTAHAGAKFPIKW 182

Query: 742 MAPEYGTKGRVSTRGDVCSFGII 764
            APE     + S + DV +FG++
Sbjct: 183 TAPESLAYNKFSIKSDVWAFGVL 205

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 283

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 98.4 bits (244), Expect = 3e-23
 Identities = 34/196 (17%), Positives = 70/196 (35%), Gaps = 59/196 (30%)

Query: 628 DRFSENNLIGIGN----------------GMEVAVKVFHQQY-ERALKSFEDECEVRKRI 670
              +   +IG G                  + VA+K     Y E+    F  E  +  + 
Sbjct: 7   SCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQF 66

Query: 671 RHRNLVK-----------------------------------------IISSSLEYLHFG 689
            H N+++                                         ++      + + 
Sbjct: 67  SHHNIIRLEGVISKYKPMMIITEYMENGALDKFLREKDGEFSVLQLVGMLRGIAAGMKYL 126

Query: 690 HSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLA-TIGYMAPEYGT 748
            ++  +H DL   N+L++ ++V  +SDFG++++L  + + +  T      I + APE  +
Sbjct: 127 ANMNYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEATYTTSGGKIPIRWTAPEAIS 186

Query: 749 KGRVSTRGDVCSFGII 764
             + ++  DV SFGI+
Sbjct: 187 YRKFTSASDVWSFGIV 202

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 96.7 bits (240), Expect = 7e-23
 Identities = 40/189 (21%), Positives = 70/189 (37%), Gaps = 54/189 (28%)

Query: 628 DRFSENNLIGIG-----------NGMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLV 676
              +    IG G           N  +VA+K   +    + + F +E EV  ++ H  LV
Sbjct: 5   SELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREG-AMSEEDFIEEAEVMMKLSHPKLV 63

Query: 677 KIISSS-----------------------------------------LEYLHFGHSIPII 695
           ++                                              E + +     +I
Sbjct: 64  QLYGVCLEQAPICLVFEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLEEACVI 123

Query: 696 HCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTR 755
           H DL   N L+ E+ V  +SDFG+ + +  +DQ +  T T   + + +PE  +  R S++
Sbjct: 124 HRDLAARNCLVGENQVIKVSDFGMTRFVL-DDQYTSSTGTKFPVKWASPEVFSFSRYSSK 182

Query: 756 GDVCSFGII 764
            DV SFG++
Sbjct: 183 SDVWSFGVL 191

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Length = 262

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 96.2 bits (239), Expect = 1e-22
 Identities = 45/171 (26%), Positives = 66/171 (38%), Gaps = 50/171 (29%)

Query: 637 GIGNGMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVKIISSS----------LEY- 685
           G   G +VAVK      +   ++F  E  V  ++RH NLV+++              EY 
Sbjct: 26  GDYRGNKVAVKCIKN--DATAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYM 83

Query: 686 --------------------------------LHFGHSIPIIHCDLKPSNVLLDEDMVAH 713
                                           + +      +H DL   NVL+ ED VA 
Sbjct: 84  AKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGNNFVHRDLAARNVLVSEDNVAK 143

Query: 714 ISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
           +SDFG+ K  S     S Q      + + APE   + + ST+ DV SFGI+
Sbjct: 144 VSDFGLTKEAS-----STQDTGKLPVKWTAPEALREKKFSTKSDVWSFGIL 189

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 95.8 bits (238), Expect = 3e-22
 Identities = 36/172 (20%), Positives = 61/172 (35%), Gaps = 48/172 (27%)

Query: 639 GNGMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVKIISSS---------LEY---- 685
              +  A KV   + E  L+ +  E ++     H N+VK++ +          +E+    
Sbjct: 35  ETSVLAAAKVIDTKSEEELEDYMVEIDILASCDHPNIVKLLDAFYYENNLWILIEFCAGG 94

Query: 686 ----------------------------LHFGHSIPIIHCDLKPSNVLLDEDMVAHISDF 717
                                       L++ H   IIH DLK  N+L   D    ++DF
Sbjct: 95  AVDAVMLELERPLTESQIQVVCKQTLDALNYLHDNKIIHRDLKAGNILFTLDGDIKLADF 154

Query: 718 GIAKLLSGEDQLSKQTQTLATIGYMAPEY-----GTKGRVSTRGDVCSFGII 764
           G++   +   Q  ++   + T  +MAPE              + DV S GI 
Sbjct: 155 GVSAKNTRTIQ--RRDSFIGTPYWMAPEVVMCETSKDRPYDYKADVWSLGIT 204

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 95.2 bits (236), Expect = 4e-22
 Identities = 36/189 (19%), Positives = 62/189 (32%), Gaps = 56/189 (29%)

Query: 632 ENNLIGIGN--------------GMEVAVKVFHQQY--ERALKSFEDECEVRKRIRHRNL 675
           E+  +G GN                 VAVK+   +            E  V +++ +  +
Sbjct: 11  EDKELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYI 70

Query: 676 VK---------------------------------------IISSSLEYLHFGHSIPIIH 696
           V+                                       ++      + +      +H
Sbjct: 71  VRMIGICEAESWMLVMEMAELGPLNKYLQQNRHVKDKNIIELVHQVSMGMKYLEESNFVH 130

Query: 697 CDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLA-TIGYMAPEYGTKGRVSTR 755
            DL   NVLL     A ISDFG++K L  ++   K        + + APE     + S++
Sbjct: 131 RDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQTHGKWPVKWYAPECINYYKFSSK 190

Query: 756 GDVCSFGII 764
            DV SFG++
Sbjct: 191 SDVWSFGVL 199

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]} Length = 258

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 94.0 bits (233), Expect = 5e-22
 Identities = 30/166 (18%), Positives = 63/166 (37%), Gaps = 43/166 (25%)

Query: 640 NGMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVKIISSS---------LEYLHFG- 689
              +VA+K+  +    +   F +E +V   + H  LV++              EY+  G 
Sbjct: 27  GQYDVAIKMIKEG-SMSEDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFIITEYMANGC 85

Query: 690 -------------------------------HSIPIIHCDLKPSNVLLDEDMVAHISDFG 718
                                           S   +H DL   N L+++  V  +SDFG
Sbjct: 86  LLNYLREMRHRFQTQQLLEMCKDVCEAMEYLESKQFLHRDLAARNCLVNDQGVVKVSDFG 145

Query: 719 IAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
           +++ +  +D+ +    +   + +  PE     + S++ D+ +FG++
Sbjct: 146 LSRYVL-DDEYTSSVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVL 190

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 271

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 94.3 bits (234), Expect = 5e-22
 Identities = 43/191 (22%), Positives = 67/191 (35%), Gaps = 54/191 (28%)

Query: 628 DRFSENNLIGIG------------NGMEVAVKVFHQQY-ERALKSFEDECEVRKRIRHRN 674
           + +     +G G                VAVK+   +      ++ + E  + K + H N
Sbjct: 5   EDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHEN 64

Query: 675 LVKIISSS---------LEY-------------------------------LHFGHSIPI 694
           +VK              LEY                               + + H I I
Sbjct: 65  VVKFYGHRREGNIQYLFLEYCSGGELFDRIEPDIGMPEPDAQRFFHQLMAGVVYLHGIGI 124

Query: 695 IHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVST 754
            H D+KP N+LLDE     ISDFG+A +    ++     +   T+ Y+APE   +     
Sbjct: 125 THRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELLKRREFHA 184

Query: 755 RG-DVCSFGII 764
              DV S GI+
Sbjct: 185 EPVDVWSCGIV 195

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 94.3 bits (234), Expect = 8e-22
 Identities = 41/189 (21%), Positives = 71/189 (37%), Gaps = 53/189 (28%)

Query: 627 TDRFSENNLIGIG------------NGMEVAVKVFHQQYERALKSFEDECEVRKRIRHRN 674
             +++    IG G             G EVA++  + Q +   +   +E  V +  ++ N
Sbjct: 19  KKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPN 78

Query: 675 LVK---------------------------------------IISSSLEYLHFGHSIPII 695
           +V                                        +    L+ L F HS  +I
Sbjct: 79  IVNYLDSYLVGDELWVVMEYLAGGSLTDVVTETCMDEGQIAAVCRECLQALEFLHSNQVI 138

Query: 696 HCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTR 755
           H D+K  N+LL  D    ++DFG    ++ E   SK++  + T  +MAPE  T+     +
Sbjct: 139 HRDIKSDNILLGMDGSVKLTDFGFCAQITPEQ--SKRSTMVGTPYWMAPEVVTRKAYGPK 196

Query: 756 GDVCSFGII 764
            D+ S GI+
Sbjct: 197 VDIWSLGIM 205

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 317

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 94.5 bits (234), Expect = 1e-21
 Identities = 36/200 (18%), Positives = 69/200 (34%), Gaps = 58/200 (29%)

Query: 622 ELLRATDRFSENNLIGIGN----------------GMEVAVKVFHQ-QYERALKSFEDEC 664
            +L+ T+ F +  ++G G                  + VA+K   +    +A K   DE 
Sbjct: 4   RILKETE-FKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEA 62

Query: 665 EVRKRIRHRNLVKIISSS----------------------------------------LE 684
            V   + + ++ +++                                            +
Sbjct: 63  YVMASVDNPHVCRLLGICLTSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAK 122

Query: 685 YLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAP 744
            +++     ++H DL   NVL+       I+DFG+AKLL  E++          I +MA 
Sbjct: 123 GMNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMAL 182

Query: 745 EYGTKGRVSTRGDVCSFGII 764
           E       + + DV S+G+ 
Sbjct: 183 ESILHRIYTHQSDVWSYGVT 202

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 93.9 bits (233), Expect = 1e-21
 Identities = 42/196 (21%), Positives = 65/196 (33%), Gaps = 64/196 (32%)

Query: 627 TDRFSENNLIGIG------------NGMEVAVKVFHQ---QYERALKSFEDECEVRKRIR 671
              FS+   IG G            N   VA+K       Q     +    E    +++R
Sbjct: 14  EKLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLR 73

Query: 672 HRNLVKIISSS---------LEY-------------------------------LHFGHS 691
           H N ++              +EY                               L + HS
Sbjct: 74  HPNTIQYRGCYLREHTAWLVMEYCLGSASDLLEVHKKPLQEVEIAAVTHGALQGLAYLHS 133

Query: 692 IPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEY---GT 748
             +IH D+K  N+LL E  +  + DFG A +      ++     + T  +MAPE      
Sbjct: 134 HNMIHRDVKAGNILLSEPGLVKLGDFGSASI------MAPANSFVGTPYWMAPEVILAMD 187

Query: 749 KGRVSTRGDVCSFGII 764
           +G+   + DV S GI 
Sbjct: 188 EGQYDGKVDVWSLGIT 203

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.7 bits (230), Expect = 2e-21
 Identities = 36/195 (18%), Positives = 66/195 (33%), Gaps = 65/195 (33%)

Query: 628 DRFSENNLIGIG------------NGMEVAVKVFHQQY---ERALKSFEDECEVRKRIRH 672
           + F     +G G            +   +A+KV  +              E E++  +RH
Sbjct: 6   EDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRH 65

Query: 673 RNLVKI-------------------------------------------ISSSLEYLHFG 689
            N++++                                           ++++L Y H  
Sbjct: 66  PNILRLYGYFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCH-- 123

Query: 690 HSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTK 749
            S  +IH D+KP N+LL       I+DFG +         S++T    T+ Y+ PE    
Sbjct: 124 -SKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPS----SRRTTLCGTLDYLPPEMIEG 178

Query: 750 GRVSTRGDVCSFGII 764
                + D+ S G++
Sbjct: 179 RMHDEKVDLWSLGVL 193

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]} Length = 269

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.7 bits (230), Expect = 2e-21
 Identities = 32/178 (17%), Positives = 61/178 (34%), Gaps = 55/178 (30%)

Query: 640 NGMEVAVKVFHQQY--ERALKSFEDECEVRKRIRHRNLVKI------------------- 678
           +G  +  K        E   +    E  + + ++H N+V+                    
Sbjct: 28  DGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRTNTTLYIVMEYC 87

Query: 679 ------------------------------ISSSLEYLHFGH--SIPIIHCDLKPSNVLL 706
                                         ++ +L+  H        ++H DLKP+NV L
Sbjct: 88  EGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRRSDGGHTVLHRDLKPANVFL 147

Query: 707 DEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
           D      + DFG+A++L+ +   +K      T  YM+PE   +   + + D+ S G +
Sbjct: 148 DGKQNVKLGDFGLARILNHDTSFAKAFVG--TPYYMSPEQMNRMSYNEKSDIWSLGCL 203

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 270

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 91.6 bits (227), Expect = 4e-21
 Identities = 37/176 (21%), Positives = 60/176 (34%), Gaps = 56/176 (31%)

Query: 639 GNGMEVAVKVFHQQY--ERALKSFEDECEVRKRIRHRNLVKI------------------ 678
              +EVA      +   +   + F++E E+ K ++H N+V+                   
Sbjct: 32  ETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVLVT 91

Query: 679 -----------------------------ISSSLEYLHFGHSIPIIHCDLKPSNVLL-DE 708
                                        I   L++LH   + PIIH DLK  N+ +   
Sbjct: 92  ELMTSGTLKTYLKRFKVMKIKVLRSWCRQILKGLQFLHT-RTPPIIHRDLKCDNIFITGP 150

Query: 709 DMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
                I D G+A L       S     + T  +MAPE   + +     DV +FG+ 
Sbjct: 151 TGSVKIGDLGLATLKRA----SFAKAVIGTPEFMAPEM-YEEKYDESVDVYAFGMC 201

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 316

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 92.8 bits (230), Expect = 5e-21
 Identities = 37/168 (22%), Positives = 61/168 (36%), Gaps = 48/168 (28%)

Query: 640 NGMEVAVKVFHQQY---ERALKSFEDECEVRKRIRHRNLVKIISSS-------------- 682
           NG   A+KV  ++     + ++   DE  +   + H  ++++  +               
Sbjct: 28  NGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQDAQQIFMIMDYIE 87

Query: 683 --------------------------LEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISD 716
                                        L + HS  II+ DLKP N+LLD++    I+D
Sbjct: 88  GGELFSLLRKSQRFPNPVAKFYAAEVCLALEYLHSKDIIYRDLKPENILLDKNGHIKITD 147

Query: 717 FGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
           FG AK +              T  Y+APE  +    +   D  SFGI+
Sbjct: 148 FGFAKYVP-----DVTYTLCGTPDYIAPEVVSTKPYNKSIDWWSFGIL 190

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 91.8 bits (227), Expect = 8e-21
 Identities = 33/171 (19%), Positives = 61/171 (35%), Gaps = 45/171 (26%)

Query: 639 GNGMEVAVKVFHQQY-ERALKSFEDECEVRKRIRHRNLVKIISSSLE------------- 684
           G  +  AVK  ++      +  F  E  + K   H N++ ++   L              
Sbjct: 53  GKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYMK 112

Query: 685 -----------------------------YLHFGHSIPIIHCDLKPSNVLLDEDMVAHIS 715
                                         + F  S   +H DL   N +LDE     ++
Sbjct: 113 HGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKFLASKKFVHRDLAARNCMLDEKFTVKVA 172

Query: 716 DFGIAKLLSGED--QLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
           DFG+A+ +  ++   +  +T     + +MA E     + +T+ DV SFG++
Sbjct: 173 DFGLARDMYDKEFDSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVL 223

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 325

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 90.6 bits (224), Expect = 2e-20
 Identities = 28/118 (23%), Positives = 50/118 (42%)

Query: 647 KVFHQQYERALKSFEDECEVRKRIRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLL 706
           K    + E   +   +E E    +   +L+       + + F      +H DL   NVL+
Sbjct: 138 KFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEFKSCVHRDLAARNVLV 197

Query: 707 DEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
               V  I DFG+A+ +  +     +      + +MAPE   +G  + + DV S+GI+
Sbjct: 198 THGKVVKICDFGLARDIMSDSNYVVRGNARLPVKWMAPESLFEGIYTIKSDVWSYGIL 255

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 301

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 89.5 bits (221), Expect = 5e-20
 Identities = 23/90 (25%), Positives = 40/90 (44%)

Query: 675 LVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQ 734
            + I       + +      +H DL   N L+ E+MV  I+DFG+++ +   D       
Sbjct: 142 QLCIARQVAAGMAYLSERKFVHRDLATRNCLVGENMVVKIADFGLSRNIYSADYYKADGN 201

Query: 735 TLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
               I +M PE     R +T  DV ++G++
Sbjct: 202 DAIPIRWMPPESIFYNRYTTESDVWAYGVV 231

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]} Length = 345

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.5 bits (221), Expect = 9e-20
 Identities = 44/196 (22%), Positives = 71/196 (36%), Gaps = 58/196 (29%)

Query: 627 TDRFSENNLIGIG------------NGMEVAVKVFHQ-QYERALKSFEDECEVRKRIRHR 673
             R++  + IG G            N + VA+K     +++   +    E ++  R RH 
Sbjct: 7   GPRYTNLSYIGEGAYGMVCSAYDNVNKVRVAIKKISPFEHQTYCQRTLREIKILLRFRHE 66

Query: 674 NLVK-------------------------------------------IISSSLEYLHFGH 690
           N++                                             +   L  L + H
Sbjct: 67  NIIGINDIIRAPTIEQMKDVYLVTHLMGADLYKLLKTQHLSNDHICYFLYQILRGLKYIH 126

Query: 691 SIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLL-SGEDQLSKQTQTLATIGYMAPEYGTK 749
           S  ++H DLKPSN+LL+      I DFG+A++     D     T+ +AT  Y APE    
Sbjct: 127 SANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLN 186

Query: 750 GRVSTR-GDVCSFGII 764
            +  T+  D+ S G I
Sbjct: 187 SKGYTKSIDIWSVGCI 202

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 90.1 bits (222), Expect = 9e-20
 Identities = 74/399 (18%), Positives = 137/399 (34%), Gaps = 46/399 (11%)

Query: 74  NLSSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQLFGSLSSFIFNMSSMTTIDLSI 133
            L+      L    ++  +  +  ++  +  L      +  S+   +  ++++T I+ S 
Sbjct: 20  ALAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGI-KSIDG-VEYLNNLTQINFSN 75

Query: 134 NRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEIGNLTKLKEIISTITNSTV 193
           N+L+   P         L    +L ++ +  N ++   P           + +       
Sbjct: 76  NQLTDITP---------LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDID 126

Query: 194 CEIPR-----------EIGNLPYLARLALATNNLVGVVPVTIFNMSALKEISLLNNSLSG 242
                            I ++  L+ L        G     +  ++ L  +  L+ S + 
Sbjct: 127 PLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNK 186

Query: 243 SLPSRIDLSLPNVETLNLGINSFSGTIPSSITNSSKLSDLELGENLFSGFIPNTIGNLRN 302
                +   L N+E+L    N  S   P  I  +  L +L L  N        T+ +L N
Sbjct: 187 VSDISVLAKLTNLESLIATNNQISDITPLGILTN--LDELSLNGNQLKD--IGTLASLTN 242

Query: 303 LEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGILPKSIGNFSLSLETILM 362
           L   ++A+N +++  P       L+   KL  L +  N +  I P      +       +
Sbjct: 243 LTDLDLANNQISNLAP-------LSGLTKLTELKLGANQISNISP-----LAGLTALTNL 290

Query: 363 ANCSISGNIPQVVGNLSNLLVLELGGNNLTGPIPVTFSQLQTLQAFDLTRNKLAGPITDE 422
                       + NL NL  L L  NN++   P   S L  LQ      NK++      
Sbjct: 291 ELNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSDV--SS 346

Query: 423 LCHLARLHSLVLQGNKFSGSIPSCLGNLTSVRVLYLGLN 461
           L +L  ++ L    N+ S   P  L NLT +  L L   
Sbjct: 347 LANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 85.1 bits (209), Expect = 4e-18
 Identities = 71/347 (20%), Positives = 129/347 (37%), Gaps = 30/347 (8%)

Query: 72  LGNLSSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQLFGSLS-----SFIFNMSSM 126
           +  L++L  ++ S+N+L+   P  + N+  L  +  ++NQ+          +        
Sbjct: 62  VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFN 119

Query: 127 TTIDLSINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEIGNLTKLKEIIS 186
             I       +      +    +T+S    L  L        G    ++  L  L  +  
Sbjct: 120 NQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLER 179

Query: 187 TITNSTVCEIPREIGNLPYLARLALATNNLVGVVPVTIFNMSALKEISLLNNSLSGSLPS 246
              +S        +  L  L  L    N +  + P  +  ++ L E+SL  N L      
Sbjct: 180 LDISSNKVSDISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIGTL 237

Query: 247 RIDLSLPNVETLNLGINSFSGTIPSSITNSSKLSDLELGENLFSGFIPNTIGNLRNLEFG 306
               SL N+  L+L  N  S   P  ++  +KL++L+LG N  S   P  +  L  L   
Sbjct: 238 A---SLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNL 290

Query: 307 NIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGILPKSIGNFSLSLETILMANCS 366
            + +N L   +P        +N K L  L +  N +  I P  + + +  L+ +  AN  
Sbjct: 291 ELNENQLEDISPI-------SNLKNLTYLTLYFNNISDISP--VSSLT-KLQRLFFANNK 340

Query: 367 ISGNIPQVVGNLSNLLVLELGGNNLTGPIPVTFSQLQTLQAFDLTRN 413
           +S      + NL+N+  L  G N ++   P   + L  +    L   
Sbjct: 341 VSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 68.9 bits (167), Expect = 7e-13
 Identities = 42/195 (21%), Positives = 81/195 (41%), Gaps = 22/195 (11%)

Query: 44  GITCDVNSHRVIGLNISSFNLQGTITPQLGNLSSLQTLDLSHNKLSGNIPSSIFNMHTLK 103
            IT       +  L+++   L+      L +L++L  LDL++N++S   P  +  +  L 
Sbjct: 211 DITPLGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLT 266

Query: 104 LLDFSDNQLFGSLSSFIFNMSSMTTIDLSINRLSGELPANICKIPSTLSKCKQLEELNLG 163
            L    NQ+            +   +             N  +  S +S  K L  L L 
Sbjct: 267 ELKLGANQISNISPLAGLTALTNLEL-----------NENQLEDISPISNLKNLTYLTLY 315

Query: 164 FNNLSGAIPKEIGNLTKLKEIISTITNSTVCEIPREIGNLPYLARLALATNNLVGVVPVT 223
           FNN+S   P  + +LTKL+ +     N+ V ++   + NL  +  L+   N +  + P  
Sbjct: 316 FNNISDISP--VSSLTKLQRLF--FANNKVSDVS-SLANLTNINWLSAGHNQISDLTP-- 368

Query: 224 IFNMSALKEISLLNN 238
           + N++ + ++ L + 
Sbjct: 369 LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 65.8 bits (159), Expect = 7e-12
 Identities = 69/383 (18%), Positives = 134/383 (34%), Gaps = 49/383 (12%)

Query: 155 KQLEELNLGFNNLSGAIPK-EIGNLTKLKEIISTITNSTVCEIPREIGNLPYLARLALAT 213
            +  +  LG  N++  + + ++  +T L           +  I   +  L  L ++  + 
Sbjct: 22  AEKMKTVLGKTNVTDTVSQTDLDQVTTL-----QADRLGIKSID-GVEYLNNLTQINFSN 75

Query: 214 NNLVGVVPVTIFNMSALKEISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSI 273
           N L  + P  + N++ L +I + NN ++   P     +L  +   N  I         + 
Sbjct: 76  NQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTN 133

Query: 274 TNSSKLSDLEL------GENLFSGFIPNTIGNLRNLEFGNIADNYLTSSTP-ELSFLSSL 326
            N  +LS   +              +             N+        +  ++S +S L
Sbjct: 134 LNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVL 193

Query: 327 TNCKKLKVLIVTGNPLDGILPKSIGNFSLSLETILMANCSISGNIPQVVGNLSNLLVLEL 386
                L+ LI T N +  I P  I     +L+ + +    +       + +L+NL  L+L
Sbjct: 194 AKLTNLESLIATNNQISDITPLGILT---NLDELSLNGNQLKD--IGTLASLTNLTDLDL 248

Query: 387 GGNNLTGPIPVTFSQLQTLQAFDLTRNKLAGPI--------------------TDELCHL 426
             N ++   P   S L  L    L  N+++                          + +L
Sbjct: 249 ANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNL 306

Query: 427 ARLHSLVLQGNKFSGSIPSCLGNLTSVRVLYLGLNIFTSVLSSTIWNLKDILFIDVSSNF 486
             L  L L  N  S   P  + +LT ++ L+   N  + V  S++ NL +I ++    N 
Sbjct: 307 KNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSDV--SSLANLTNINWLSAGHNQ 362

Query: 487 LDGPLSLDIGNLKVVIGLDFSRN 509
           +     L   NL  +  L  +  
Sbjct: 363 ISDLTPL--ANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 61.6 bits (148), Expect = 2e-10
 Identities = 67/363 (18%), Positives = 120/363 (33%), Gaps = 39/363 (10%)

Query: 202 NLPYLARLALATNNLVGVVPVTIFNMSALKEISLLNNSLSGSLPSRIDLSLPNVETLNLG 261
            L    +  L   N+   V  T  ++  +  +      +  S+   ++  L N+  +N  
Sbjct: 20  ALAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIK-SIDG-VE-YLNNLTQINFS 74

Query: 262 INSFSGTIPSSITNSSKLSDLELGENLFSGFIPNTIGNLRNLE-------FGNIADNYLT 314
            N  +   P  + N +KL D+ +  N  +   P                         LT
Sbjct: 75  NNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLT 132

Query: 315 SSTPELSFLSSLTNCKKLKVLIVTGNPLDGILPKSIGNFSLSLETILMANCSISGNIPQV 374
           +        +++++   L  L        G     +   +       +   S   +   V
Sbjct: 133 NLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISV 192

Query: 375 VGNLSNLLVLELGGNNLTGPIPVTFSQLQTLQAFDLTRNKLAGPITDELCHLARLHSLVL 434
           +  L+NL  L    N ++   P+       L    L  N+L       L  L  L  L L
Sbjct: 193 LAKLTNLESLIATNNQISDITPLGILT--NLDELSLNGNQLKDI--GTLASLTNLTDLDL 248

Query: 435 QGNKFSGSIPSCLGNLTSVRVLYLGLNIFTSVLSSTIWNLKDILFIDVSSNFLDGPLSLD 494
             N+ S   P  L  LT +  L LG N  +++  S +  L  +  ++++ N L+      
Sbjct: 249 ANNQISNLAP--LSGLTKLTELKLGANQISNI--SPLAGLTALTNLELNENQLEDIS--P 302

Query: 495 IGNLKVVIGLDFSRNNLSGDIPITIGEGEIPRGGPFANLTAKSFMGNEL-----LCGLPD 549
           I NLK +  L    NN+S   P+               L    F  N++     L  L +
Sbjct: 303 ISNLKNLTYLTLYFNNISDISPV----------SSLTKLQRLFFANNKVSDVSSLANLTN 352

Query: 550 LQV 552
           +  
Sbjct: 353 INW 355

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 56.2 bits (134), Expect = 7e-09
 Identities = 20/95 (21%), Positives = 40/95 (42%), Gaps = 6/95 (6%)

Query: 40  CIWIGITCDVNSHRVIGLNISSFNLQGTITPQLGNLSSLQTLDLSHNKLSGNIPSSIFNM 99
                I+   N   +  L +   N+       + +L+ LQ L  ++NK+S    SS+ N+
Sbjct: 295 NQLEDISPISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVSD--VSSLANL 350

Query: 100 HTLKLLDFSDNQLFGSLSSFIFNMSSMTTIDLSIN 134
             +  L    NQ+       + N++ +T + L+  
Sbjct: 351 TNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 55.8 bits (133), Expect = 1e-08
 Identities = 78/384 (20%), Positives = 135/384 (35%), Gaps = 43/384 (11%)

Query: 162 LGFNNLSGAIP-KEIGNLTKLKEIISTITNSTVCEIPREIGNLPYLARLALATNNLVGVV 220
           LG   ++   P  +I   T L E + T+   T         +L  +  L      +  + 
Sbjct: 1   LGSATITQDTPINQIFTDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSID 60

Query: 221 PVTIFNMSALKEISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSITNSSKLS 280
              +  ++ L +I+  NN L+   P +   +L  +  + +  N  +   P +   +    
Sbjct: 61  G--VEYLNNLTQINFSNNQLTDITPLK---NLTKLVDILMNNNQIADITPLANLTNLTGL 115

Query: 281 DLELGENLFSGFIPNTIGNLRNLEFGN----IADNYLTSSTPELSFLSSLTNCKKLKVLI 336
            L   +      + N     R     N    I+     +S  +LSF + +T+ K L  L 
Sbjct: 116 TLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLT 175

Query: 337 VTGNPLDGILPKSIGNFSLSLE---TILMANCSISGNIPQVVGNLSNLLVLELGGNNLTG 393
                       S  +    L    +++  N  IS   P     L+NL  L L GN L  
Sbjct: 176 TLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLG--ILTNLDELSLNGNQLKD 233

Query: 394 PIPVTFSQLQTLQAFDLTRNKLAGPITDELCHLARLHSLVLQGNKFSGSIP--------- 444
               T + L  L   DL  N+++      L  L +L  L L  N+ S   P         
Sbjct: 234 IG--TLASLTNLTDLDLANNQISNLA--PLSGLTKLTELKLGANQISNISPLAGLTALTN 289

Query: 445 -----------SCLGNLTSVRVLYLGLNIFTSVLSSTIWNLKDILFIDVSSNFLDGPLSL 493
                      S + NL ++  L L  N  + +  S + +L  +  +  ++N +    SL
Sbjct: 290 LELNENQLEDISPISNLKNLTYLTLYFNNISDI--SPVSSLTKLQRLFFANNKVSDVSSL 347

Query: 494 DIGNLKVVIGLDFSRNNLSGDIPI 517
              NL  +  L    N +S   P+
Sbjct: 348 --ANLTNINWLSAGHNQISDLTPL 369

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.9 bits (217), Expect = 1e-19
 Identities = 36/170 (21%), Positives = 49/170 (28%), Gaps = 44/170 (25%)

Query: 639 GNGMEVAVKVFHQQY---ERALKSFEDECEVRKRIRHRNLVKIISSS--------LEYLH 687
           G  + VAVK           A+  F  E      + HRNL+++             E   
Sbjct: 34  GKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLTPPMKMVTELAP 93

Query: 688 FG--------------------------------HSIPIIHCDLKPSNVLLDEDMVAHIS 715
            G                                 S   IH DL   N+LL    +  I 
Sbjct: 94  LGSLLDRLRKHQGHFLLGTLSRYAVQVAEGMGYLESKRFIHRDLAARNLLLATRDLVKIG 153

Query: 716 DFGIAKLL-SGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
           DFG+ + L   +D    Q        + APE       S   D   FG+ 
Sbjct: 154 DFGLMRALPQNDDHYVMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVT 203

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]} Length = 303

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.4 bits (218), Expect = 1e-19
 Identities = 39/187 (20%), Positives = 58/187 (31%), Gaps = 60/187 (32%)

Query: 637 GIGNGMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVKI------------------ 678
           G   G EVAVK+F  + ER+    E E      +RH N++                    
Sbjct: 22  GKWRGEEVAVKIFSSREERSWF-REAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVS 80

Query: 679 ----------------------------ISSSLEYLH-----FGHSIPIIHCDLKPSNVL 705
                                        +S L +LH           I H DLK  N+L
Sbjct: 81  DYHEHGSLFDYLNRYTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNIL 140

Query: 706 LDEDMVAHISDFGIAKLLSGEDQLS--KQTQTLATIGYMAPEY------GTKGRVSTRGD 757
           + ++    I+D G+A                 + T  YMAPE               R D
Sbjct: 141 VKKNGTCCIADLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRAD 200

Query: 758 VCSFGII 764
           + + G++
Sbjct: 201 IYAMGLV 207

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

 Score = 89.0 bits (220), Expect = 1e-19
 Identities = 34/192 (17%), Positives = 56/192 (29%), Gaps = 58/192 (30%)

Query: 628 DRFSENNLIGIG------------NGMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNL 675
           D +  +  +G G             G   A K     +E   ++   E +    +RH  L
Sbjct: 26  DHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTL 85

Query: 676 VKIISSS---------LEY--------------------------------LHFGHSIPI 694
           V +  +           E+                                L   H    
Sbjct: 86  VNLHDAFEDDNEMVMIYEFMSGGELFEKVADEHNKMSEDEAVEYMRQVCKGLCHMHENNY 145

Query: 695 IHCDLKPSNVLL--DEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRV 752
           +H DLKP N++          + DFG+   L  +  +   T T     + APE      V
Sbjct: 146 VHLDLKPENIMFTTKRSNELKLIDFGLTAHLDPKQSVKVTTGTA---EFAAPEVAEGKPV 202

Query: 753 STRGDVCSFGII 764
               D+ S G++
Sbjct: 203 GYYTDMWSVGVL 214

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 86.0 bits (212), Expect = 4e-19
 Identities = 41/198 (20%), Positives = 67/198 (33%), Gaps = 60/198 (30%)

Query: 627 TDRFSENNLIGIG------------NGMEVAVKVFHQQY---ERALKSFEDECEVRKRIR 671
           +DR+    ++G G               +VAVKV              F  E +    + 
Sbjct: 6   SDRYELGEILGFGGMSEVHLARDLRLHRDVAVKVLRADLARDPSFYLRFRREAQNAAALN 65

Query: 672 HRNLVK--------------------------------------------IISSSLEYLH 687
           H  +V                                             +I+ + + L+
Sbjct: 66  HPAIVAVYDTGEAETPAGPLPYIVMEYVDGVTLRDIVHTEGPMTPKRAIEVIADACQALN 125

Query: 688 FGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLA-TIGYMAPEY 746
           F H   IIH D+KP+N+++       + DFGIA+ ++       QT  +  T  Y++PE 
Sbjct: 126 FSHQNGIIHRDVKPANIMISATNAVKVMDFGIARAIADSGNSVTQTAAVIGTAQYLSPEQ 185

Query: 747 GTKGRVSTRGDVCSFGII 764
                V  R DV S G +
Sbjct: 186 ARGDSVDARSDVYSLGCV 203

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.0 bits (212), Expect = 4e-19
 Identities = 31/167 (18%), Positives = 57/167 (34%), Gaps = 42/167 (25%)

Query: 639 GNGMEVAVKVFHQQY-ERALKSFEDECEVRKRIRHRNLVKIISSSLEY------------ 685
              + VA+K       +   + F  E    ++  H ++VK+I    E             
Sbjct: 33  NPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVITENPVWIIMELCTLG 92

Query: 686 ----------------------------LHFGHSIPIIHCDLKPSNVLLDEDMVAHISDF 717
                                       L +  S   +H D+   NVL+  +    + DF
Sbjct: 93  ELRSFLQVRKYSLDLASLILYAYQLSTALAYLESKRFVHRDIAARNVLVSSNDCVKLGDF 152

Query: 718 GIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
           G+++ +  +    K ++    I +MAPE     R ++  DV  FG+ 
Sbjct: 153 GLSRYME-DSTYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVC 198

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]} Length = 352

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

 Score = 83.6 bits (206), Expect = 8e-18
 Identities = 34/192 (17%), Positives = 64/192 (33%), Gaps = 58/192 (30%)

Query: 628 DRFSENNLIGIG------------NGMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNL 675
           D +     +G G             G     K  +  Y     + ++E  +  ++ H  L
Sbjct: 29  DYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPKL 88

Query: 676 VKIISSS---------LEY--------------------------------LHFGHSIPI 694
           + +  +          LE+                                L   H   I
Sbjct: 89  INLHDAFEDKYEMVLILEFLSGGELFDRIAAEDYKMSEAEVINYMRQACEGLKHMHEHSI 148

Query: 695 IHCDLKPSNVLLD--EDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRV 752
           +H D+KP N++ +  +     I DFG+A  L+ ++ +   T   AT  + APE   +  V
Sbjct: 149 VHLDIKPENIMCETKKASSVKIIDFGLATKLNPDEIVKVTT---ATAEFAAPEIVDREPV 205

Query: 753 STRGDVCSFGII 764
               D+ + G++
Sbjct: 206 GFYTDMWAIGVL 217

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 308

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.8 bits (201), Expect = 2e-17
 Identities = 33/152 (21%), Positives = 67/152 (44%), Gaps = 2/152 (1%)

Query: 613 QAIRRFSYHELLRATDRFSENNLIGIGNGMEVAVKVFHQQYERALKSFEDECEVRKRIRH 672
             ++ F+ H ++R     S+     +   ME+  +   + Y R+L+       V      
Sbjct: 75  SVMKEFNCHHVVRLLGVVSQGQPTLVI--MELMTRGDLKSYLRSLRPAMANNPVLAPPSL 132

Query: 673 RNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQ 732
             ++++     + + + ++   +H DL   N ++ ED    I DFG+ + +   D   K 
Sbjct: 133 SKMIQMAGEIADGMAYLNANKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKG 192

Query: 733 TQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
            + L  + +M+PE    G  +T  DV SFG++
Sbjct: 193 GKGLLPVRWMSPESLKDGVFTTYSDVWSFGVV 224

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.8 bits (201), Expect = 2e-17
 Identities = 27/157 (17%), Positives = 61/157 (38%), Gaps = 8/157 (5%)

Query: 613 QAIRRFSYHE-LLRATDRFSENNLIGIG----NGMEVAVKVFHQQYERALKSFEDECEVR 667
           + + +  +H  ++           + +         +   +   +      +F       
Sbjct: 62  EVLCKLGHHPNIINLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTA 121

Query: 668 KRIRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGED 727
             +  + L+   +     + +      IH DL   N+L+ E+ VA I+DFG+++   G++
Sbjct: 122 STLSSQQLLHFAADVARGMDYLSQKQFIHRDLAARNILVGENYVAKIADFGLSR---GQE 178

Query: 728 QLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
              K+T     + +MA E       +T  DV S+G++
Sbjct: 179 VYVKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVL 215

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]} Length = 298

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.1 bits (199), Expect = 3e-17
 Identities = 43/193 (22%), Positives = 67/193 (34%), Gaps = 58/193 (30%)

Query: 628 DRFSENNLIGIG------------NGMEVAVKVFH--QQYERALKSFEDECEVRKRIRHR 673
           + F +   IG G             G  VA+K      + E    +   E  + K + H 
Sbjct: 2   ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHP 61

Query: 674 NLVK-----------------------------------------IISSSLEYLHFGHSI 692
           N+VK                                          +   L+ L F HS 
Sbjct: 62  NIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHSH 121

Query: 693 PIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPE-YGTKGR 751
            ++H DLKP N+L++ +    ++DFG+A+      +    T  + T+ Y APE       
Sbjct: 122 RVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVR--TYTHEVVTLWYRAPEILLGCKY 179

Query: 752 VSTRGDVCSFGII 764
            ST  D+ S G I
Sbjct: 180 YSTAVDIWSLGCI 192

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.1 bits (199), Expect = 3e-17
 Identities = 28/125 (22%), Positives = 52/125 (41%)

Query: 640 NGMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVKIISSSLEYLHFGHSIPIIHCDL 699
               ++  +  ++ E        E   +  +   +L+       + + F  S   IH DL
Sbjct: 101 KFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRKCIHRDL 160

Query: 700 KPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVC 759
              N+LL E  V  I DFG+A+ +  +    ++      + +MAPE       + + DV 
Sbjct: 161 AARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVW 220

Query: 760 SFGII 764
           SFG++
Sbjct: 221 SFGVL 225

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.6 bits (198), Expect = 7e-17
 Identities = 33/192 (17%), Positives = 59/192 (30%), Gaps = 57/192 (29%)

Query: 628 DRFSENNLIGIG------------NGMEVAVKVFHQQY---ERALKSFEDECEVRKRIRH 672
           + F    L+G G             G   A+K+  ++    +  +     E  V +  RH
Sbjct: 5   NDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRH 64

Query: 673 RNLVK----------------------------------------IISSSLEYLHFGHSI 692
             L                                            +  +  L + HS 
Sbjct: 65  PFLTALKYAFQTHDRLCFVMEYANGGELFFHLSRERVFTEERARFYGAEIVSALEYLHSR 124

Query: 693 PIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRV 752
            +++ D+K  N++LD+D    I+DFG+ K    +   +       T  Y+APE       
Sbjct: 125 DVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDG--ATMKTFCGTPEYLAPEVLEDNDY 182

Query: 753 STRGDVCSFGII 764
               D    G++
Sbjct: 183 GRAVDWWGLGVV 194

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.9 bits (196), Expect = 7e-17
 Identities = 32/157 (20%), Positives = 67/157 (42%), Gaps = 5/157 (3%)

Query: 613 QAIRRFSYHE-LLRATDRFSENNLIGI----GNGMEVAVKVFHQQYERALKSFEDECEVR 667
           + ++    H+ ++      +++  + +     +   +   +  ++      S+       
Sbjct: 70  EMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPE 129

Query: 668 KRIRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGED 727
           +++  ++LV         + +  S   IH DL   NVL+ ED V  I+DFG+A+ +   D
Sbjct: 130 EQLSSKDLVSCAYQVARGMEYLASKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHID 189

Query: 728 QLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
              K T     + +MAPE       + + DV SFG++
Sbjct: 190 YYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVL 226

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]} Length = 286

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

 Score = 79.5 bits (195), Expect = 8e-17
 Identities = 39/191 (20%), Positives = 68/191 (35%), Gaps = 56/191 (29%)

Query: 628 DRFSENNLIGIG-----------NGMEVAVKVFH--QQYERALKSFEDECEVRKRIRHRN 674
           +++     IG G            G   A+K     ++ E    +   E  + K ++H N
Sbjct: 2   EKYHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSN 61

Query: 675 LVKIISSS----------------------------------------LEYLHFGHSIPI 694
           +VK+                                            L  + + H   +
Sbjct: 62  IVKLYDVIHTKKRLVLVFEHLDQDLKKLLDVCEGGLESVTAKSFLLQLLNGIAYCHDRRV 121

Query: 695 IHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPE-YGTKGRVS 753
           +H DLKP N+L++ +    I+DFG+A+      +  K T  + T+ Y AP+      + S
Sbjct: 122 LHRDLKPQNLLINREGELKIADFGLARAFGIPVR--KYTHEIVTLWYRAPDVLMGSKKYS 179

Query: 754 TRGDVCSFGII 764
           T  D+ S G I
Sbjct: 180 TTIDIWSVGCI 190

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]} Length = 364

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 79.4 bits (195), Expect = 3e-16
 Identities = 41/196 (20%), Positives = 62/196 (31%), Gaps = 63/196 (32%)

Query: 628 DRFSENNLIGIG------------NGMEVAVKVFH------QQYERALKSFEDECEVRKR 669
           + FS + +IG G             G   A+K         +Q E    +      +   
Sbjct: 4   NDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVST 63

Query: 670 IRHRNLVK----------------------------------------IISSSLEYLHFG 689
                +V                                           +  +  L   
Sbjct: 64  GDCPFIVCMSYAFHTPDKLSFILDLMNGGDLHYHLSQHGVFSEADMRFYAAEIILGLEHM 123

Query: 690 HSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTK 749
           H+  +++ DLKP+N+LLDE     ISD G+A   S      K   ++ T GYMAPE   K
Sbjct: 124 HNRFVVYRDLKPANILLDEHGHVRISDLGLACDFSK----KKPHASVGTHGYMAPEVLQK 179

Query: 750 GR-VSTRGDVCSFGII 764
           G    +  D  S G +
Sbjct: 180 GVAYDSSADWFSLGCM 195

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]} Length = 320

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.5 bits (190), Expect = 6e-16
 Identities = 40/193 (20%), Positives = 64/193 (33%), Gaps = 58/193 (30%)

Query: 628 DRFSENNLIGIG------------NGMEVAVKVFHQQY---ERALKSFEDECEV-RKRIR 671
           + F  + ++G G                 A+K   +     +  ++    E  V      
Sbjct: 2   EDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWE 61

Query: 672 HRNLVKIISS---------SLEY-------------------------------LHFGHS 691
           H  L  +  +          +EY                               L F HS
Sbjct: 62  HPFLTHMFCTFQTKENLFFVMEYLNGGDLMYHIQSCHKFDLSRATFYAAEIILGLQFLHS 121

Query: 692 IPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGR 751
             I++ DLK  N+LLD+D    I+DFG+ K     D  +K      T  Y+APE     +
Sbjct: 122 KGIVYRDLKLDNILLDKDGHIKIADFGMCKENMLGD--AKTNTFCGTPDYIAPEILLGQK 179

Query: 752 VSTRGDVCSFGII 764
            +   D  SFG++
Sbjct: 180 YNHSVDWWSFGVL 192

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]} Length = 292

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.9 bits (188), Expect = 6e-16
 Identities = 37/192 (19%), Positives = 66/192 (34%), Gaps = 57/192 (29%)

Query: 628 DRFSENNLIGIG------------NGMEVAVKVFH--QQYERALKSFEDECEVRKRIRHR 673
            ++ +   IG G                VA+K        E    S   E  + K ++H+
Sbjct: 2   QKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHK 61

Query: 674 NLVK----------------------------------------IISSSLEYLHFGHSIP 693
           N+V+                                         +   L+ L F HS  
Sbjct: 62  NIVRLHDVLHSDKKLTLVFEFCDQDLKKYFDSCNGDLDPEIVKSFLFQLLKGLGFCHSRN 121

Query: 694 IIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPE-YGTKGRV 752
           ++H DLKP N+L++ +    +++FG+A+      +    +  + T+ Y  P+        
Sbjct: 122 VLHRDLKPQNLLINRNGELKLANFGLARAFGIPVR--CYSAEVVTLWYRPPDVLFGAKLY 179

Query: 753 STRGDVCSFGII 764
           ST  D+ S G I
Sbjct: 180 STSIDMWSAGCI 191

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 77.2 bits (189), Expect = 6e-16
 Identities = 36/202 (17%), Positives = 59/202 (29%), Gaps = 63/202 (31%)

Query: 624 LRATDRFSENNLIGIG------------NGMEVAVKVFHQQYERALKSFEDECEVRKRIR 671
           LR  +R+     IG G             G EVA+K+   + +        E ++ K ++
Sbjct: 3   LRVGNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTKH--PQLHIESKIYKMMQ 60

Query: 672 HRNLVKIISSS-----------------------------------------LEYLHFGH 690
               +  I                                            +  + + H
Sbjct: 61  GGVGIPTIRWCGAEGDYNVMVMELLGPSLEDLFNFCSRKFSLKTVLLLADQMISRIEYIH 120

Query: 691 SIPIIHCDLKPSNVL---LDEDMVAHISDFGIAKLLSGED-----QLSKQTQTLATIGYM 742
           S   IH D+KP N L     +  + +I DFG+AK              +      T  Y 
Sbjct: 121 SKNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDARTHQHIPYRENKNLTGTARYA 180

Query: 743 APEYGTKGRVSTRGDVCSFGII 764
           +         S R D+ S G +
Sbjct: 181 SINTHLGIEQSRRDDLESLGYV 202

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.2 bits (189), Expect = 6e-16
 Identities = 26/159 (16%), Positives = 54/159 (33%), Gaps = 7/159 (4%)

Query: 613 QAIRRFSYHE-LLRATDRFSENNLIGI------GNGMEVAVKVFHQQYERALKSFEDECE 665
           + +     H  ++      +      +         +   ++     +  +  S     +
Sbjct: 78  KVLSYLGNHMNIVNLLGACTIGGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMED 137

Query: 666 VRKRIRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSG 725
               +   +L+       + + F  S   IH DL   N+LL    +  I DFG+A+ +  
Sbjct: 138 DELALDLEDLLSFSYQVAKGMAFLASKNCIHRDLAARNILLTHGRITKICDFGLARDIKN 197

Query: 726 EDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
           +     +      + +MAPE       +   DV S+GI 
Sbjct: 198 DSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIF 236

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 76.8 bits (188), Expect = 7e-16
 Identities = 25/176 (14%), Positives = 47/176 (26%), Gaps = 53/176 (30%)

Query: 640 NGMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLV----------------------- 676
           N  +VA+K   ++ +       DE    K +     +                       
Sbjct: 29  NNQQVAIKFEPRRSDA--PQLRDEYRTYKLLAGCTGIPNVYYFGQEGLHNVLVIDLLGPS 86

Query: 677 ------------------KIISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAH----- 713
                                   L  +   H   +++ D+KP N L+      +     
Sbjct: 87  LEDLLDLCGRKFSVKTVAMAAKQMLARVQSIHEKSLVYRDIKPDNFLIGRPNSKNANMIY 146

Query: 714 ISDFGIAKLLSGED-----QLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
           + DFG+ K              ++     T  YM+         S R D+ + G +
Sbjct: 147 VVDFGMVKFYRDPVTKQHIPYREKKNLSGTARYMSINTHLGREQSRRDDLEALGHV 202

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 77.5 bits (190), Expect = 8e-16
 Identities = 33/192 (17%), Positives = 63/192 (32%), Gaps = 60/192 (31%)

Query: 628 DRFSENNLIGIG------------NGMEVAVKVFHQQY---ERALKSFEDECEVRKRIRH 672
           D+F     +G G            +G   A+K+  +Q     + ++   +E  + + +  
Sbjct: 41  DQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNF 100

Query: 673 RNLVK----------------------------------------IISSSLEYLHFGHSI 692
             LVK                                          +  +    + HS+
Sbjct: 101 PFLVKLEFSFKDNSNLYMVMEYVAGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLHSL 160

Query: 693 PIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRV 752
            +I+ DLKP N+L+D+     ++DFG AK         +      T   +APE       
Sbjct: 161 DLIYRDLKPENLLIDQQGYIQVTDFGFAK-----RVKGRTWTLCGTPEALAPEIILSKGY 215

Query: 753 STRGDVCSFGII 764
           +   D  + G++
Sbjct: 216 NKAVDWWALGVL 227

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.3 bits (187), Expect = 9e-16
 Identities = 38/199 (19%), Positives = 66/199 (33%), Gaps = 65/199 (32%)

Query: 628 DRFSENNLIGIG------------NGMEVAVKVFH------QQYERALKSFEDECEVRKR 669
           D +     +G G             G++ A K          +   + +  E E  + K 
Sbjct: 10  DYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKE 69

Query: 670 IRHRNLVK----------------------------------------IISSSLEYLHFG 689
           I+H N++                                          +   L  +++ 
Sbjct: 70  IQHPNVITLHEVYENKTDVILILELVAGGELFDFLAEKESLTEEEATEFLKQILNGVYYL 129

Query: 690 HSIPIIHCDLKPSNVLLDEDMVA----HISDFGIAKLLSGEDQLSKQTQTLATIGYMAPE 745
           HS+ I H DLKP N++L +  V      I DFG+A  +   D  ++      T  ++APE
Sbjct: 130 HSLQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKI---DFGNEFKNIFGTPEFVAPE 186

Query: 746 YGTKGRVSTRGDVCSFGII 764
                 +    D+ S G+I
Sbjct: 187 IVNYEPLGLEADMWSIGVI 205

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 76.2 bits (186), Expect = 1e-15
 Identities = 44/268 (16%), Positives = 96/268 (35%), Gaps = 15/268 (5%)

Query: 76  SSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQLFGSLSSFIFNMSSMTTIDLSINR 135
                LDL +NK++        N+  L  L   +N++          +  +  + LS N+
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 136 LSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEIGNLTKLKEIISTITNSTVCE 195
           L  ELP  + K        ++L         +  ++   +  +  +   + T    +   
Sbjct: 91  LK-ELPEKMPKT------LQELRVHENEITKVRKSVFNGLNQMIVV--ELGTNPLKSSGI 141

Query: 196 IPREIGNLPYLARLALATNNLVGVVPVTIFNMSALKEISLLNNSLSGSLPSRIDLSLPNV 255
                  +  L+ + +A  N+  +         +L E+ L  N ++    + +   L N+
Sbjct: 142 ENGAFQGMKKLSYIRIADTNITTIPQ---GLPPSLTELHLDGNKITKVDAASLK-GLNNL 197

Query: 256 ETLNLGINSFSGTIPSSITNSSKLSDLELGENLFSGFIPNTIGNLRNLEFGNIADNYLTS 315
             L L  NS S     S+ N+  L +L L  N     +P  + + + ++   + +N +++
Sbjct: 198 AKLGLSFNSISAVDNGSLANTPHLRELHLN-NNKLVKVPGGLADHKYIQVVYLHNNNISA 256

Query: 316 STPE-LSFLSSLTNCKKLKVLIVTGNPL 342
                       T       + +  NP+
Sbjct: 257 IGSNDFCPPGYNTKKASYSGVSLFSNPV 284

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 69.7 bits (169), Expect = 2e-13
 Identities = 56/264 (21%), Positives = 91/264 (34%), Gaps = 18/264 (6%)

Query: 230 LKEISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSITNSSKLSDLELGENLF 289
              + L NN ++         +L N+ TL L  N  S   P +     KL  L L +N  
Sbjct: 33  TALLDLQNNKITEIKDGDFK-NLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 91

Query: 290 SGFIPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGILPKS 349
                     L+ L         +  S        +  N   +  L        GI   +
Sbjct: 92  KELPEKMPKTLQELRVHENEITKVRKSVF------NGLNQMIVVELGTNPLKSSGIENGA 145

Query: 350 IGNFSLSLETILMANCSISGNIPQVVGNLSNLLVLELGGNNLTGPIPVTFSQLQTLQAFD 409
                  L  I +A+ +I+  IPQ  G   +L  L L GN +T     +   L  L    
Sbjct: 146 FQGMK-KLSYIRIADTNIT-TIPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLG 201

Query: 410 LTRNKLAGPITDELCHLARLHSLVLQGNKFSGSIPSCLGNLTSVRVLYLGLNIFTSVLSS 469
           L+ N ++      L +   L  L L  NK    +P  L +   ++V+YL  N  +++ S+
Sbjct: 202 LSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSN 260

Query: 470 T------IWNLKDILFIDVSSNFL 487
                           + + SN +
Sbjct: 261 DFCPPGYNTKKASYSGVSLFSNPV 284

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 56.2 bits (134), Expect = 4e-09
 Identities = 28/168 (16%), Positives = 59/168 (35%), Gaps = 4/168 (2%)

Query: 352 NFSLSLETILMANCSISGNIPQVVGNLSNLLVLELGGNNLTGPIPVTFSQLQTLQAFDLT 411
           +       + + N  I+        NL NL  L L  N ++   P  F+ L  L+   L+
Sbjct: 28  DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 87

Query: 412 RNKLAGPITDELCHLARLHSLVLQGNKFSGSIPSCLGNLTSVRVLYLGLNIFTSVLSSTI 471
           +N+L          L  L     +  K   S+ + L  +  V  L       + + +   
Sbjct: 88  KNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVE-LGTNPLKSSGIENGAF 146

Query: 472 WNLKDILFIDVSSNFLDGPLSLDIGNLKVVIGLDFSRNNLSGDIPITI 519
             +K + +I ++   +    ++  G    +  L    N ++     ++
Sbjct: 147 QGMKKLSYIRIADTNIT---TIPQGLPPSLTELHLDGNKITKVDAASL 191

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 50.4 bits (119), Expect = 4e-07
 Identities = 35/186 (18%), Positives = 70/186 (37%), Gaps = 22/186 (11%)

Query: 366 SISGNIPQVVGNLSNLLVLELGGNNLTGPIPVTFSQLQTLQAFDLTRNKLAGPITDELCH 425
            +  ++P       +  +L+L  N +T      F  L+ L    L  NK++         
Sbjct: 24  KVPKDLP------PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAP 77

Query: 426 LARLHSLVLQGNKFSGSIPSCLGNLTSVRVLYLGLNIFTSVLSSTIWNLKDILFIDVSSN 485
           L +L  L L  N+    +P  +    +++ L +  N  T V  S    L  ++ +++ +N
Sbjct: 78  LVKLERLYLSKNQLK-ELPEKMPK--TLQELRVHENEITKVRKSVFNGLNQMIVVELGTN 134

Query: 486 FLD--GPLSLDIGNLKVVIGLDFSRNNLSGDIPITIGEGEIPRGGPFANLTAKSFMGNEL 543
            L   G  +     +K +  +  +  N++           IP+G    +LT     GN++
Sbjct: 135 PLKSSGIENGAFQGMKKLSYIRIADTNIT----------TIPQGL-PPSLTELHLDGNKI 183

Query: 544 LCGLPD 549
                 
Sbjct: 184 TKVDAA 189

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 50.0 bits (118), Expect = 4e-07
 Identities = 20/119 (16%), Positives = 39/119 (32%), Gaps = 24/119 (20%)

Query: 73  GNLSSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQLFGSLSSFI------------ 120
           G   SL  L L  NK++    +S+  ++ L  L  S N +    +  +            
Sbjct: 168 GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLN 227

Query: 121 -----------FNMSSMTTIDLSINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLS 168
                       +   +  + L  N +S  + +N    P   +K      ++L  N + 
Sbjct: 228 NNKLVKVPGGLADHKYIQVVYLHNNNIS-AIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 285

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.0 bits (186), Expect = 1e-15
 Identities = 35/171 (20%), Positives = 62/171 (36%), Gaps = 48/171 (28%)

Query: 640 NGMEVAVKVFHQQY-----ERALKSFEDECEVRKRIRHRNLVK----------------- 677
               VA+K     +     +   ++   E ++ + + H N++                  
Sbjct: 22  TNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGHKSNISLVFDF 81

Query: 678 -----------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHI 714
                                   +  +L+ L + H   I+H DLKP+N+LLDE+ V  +
Sbjct: 82  METDLEVIIKDNSLVLTPSHIKAYMLMTLQGLEYLHQHWILHRDLKPNNLLLDENGVLKL 141

Query: 715 SDFGIAKLLSGEDQLSKQTQTLATIGYMAPE-YGTKGRVSTRGDVCSFGII 764
           +DFG+AK     ++    T  + T  Y APE            D+ + G I
Sbjct: 142 ADFGLAKSFGSPNR--AYTHQVVTRWYRAPELLFGARMYGVGVDMWAVGCI 190

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]} Length = 305

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.5 bits (182), Expect = 5e-15
 Identities = 45/204 (22%), Positives = 69/204 (33%), Gaps = 67/204 (32%)

Query: 625 RATDRFSENNLIGIG-------------NGMEVAVKVFHQQY--ERALKSFEDECEVRKR 669
           RA  ++     IG G              G  VA+K    Q   E    S   E  V + 
Sbjct: 4   RADQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRH 63

Query: 670 I---RHRNLVK----------------------------------------------IIS 680
           +    H N+V+                                              ++ 
Sbjct: 64  LETFEHPNVVRLFDVCTVSRTDRETKLTLVFEHVDQDLTTYLDKVPEPGVPTETIKDMMF 123

Query: 681 SSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIG 740
             L  L F HS  ++H DLKP N+L+       ++DFG+A++ S +      T  + T+ 
Sbjct: 124 QLLRGLDFLHSHRVVHRDLKPQNILVTSSGQIKLADFGLARIYSFQM---ALTSVVVTLW 180

Query: 741 YMAPEYGTKGRVSTRGDVCSFGII 764
           Y APE   +   +T  D+ S G I
Sbjct: 181 YRAPEVLLQSSYATPVDLWSVGCI 204

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]} Length = 318

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.5 bits (182), Expect = 6e-15
 Identities = 40/206 (19%), Positives = 69/206 (33%), Gaps = 65/206 (31%)

Query: 625 RATDRFSENNLIGIG------------NGMEVAVKVFH--QQYERALKSFEDECEVRKRI 670
               ++ +   IG G             G +VA+K      + E    +   E ++ + +
Sbjct: 7   DEVSKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLL 66

Query: 671 RHRNLVKIISSS------------------------------------------------ 682
           +H N+V +I                                                   
Sbjct: 67  KHENVVNLIEICRTKASPYNRCKGSIYLVFDFCEHDLAGLLSNVLVKFTLSEIKRVMQML 126

Query: 683 LEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLS--GEDQLSKQTQTLATIG 740
           L  L++ H   I+H D+K +NVL+  D V  ++DFG+A+  S     Q ++ T  + T+ 
Sbjct: 127 LNGLYYIHRNKILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNSQPNRYTNRVVTLW 186

Query: 741 YMAPEYGTKGR-VSTRGDVCSFGIIS 765
           Y  PE     R      D+   G I 
Sbjct: 187 YRPPELLLGERDYGPPIDLWGAGCIM 212

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 307

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 73.9 bits (181), Expect = 7e-15
 Identities = 42/194 (21%), Positives = 66/194 (34%), Gaps = 59/194 (30%)

Query: 627 TDRFSENNLIGIG------------NGMEVAVKVFHQQY-ERALKSFEDECEVRKRIRHR 673
            D +   +++G G                VA+K   ++  E    S E+E  V  +I+H 
Sbjct: 8   RDIYDFRDVLGTGAFSEVILAEDKRTQKLVAIKCIAKKALEGKEGSMENEIAVLHKIKHP 67

Query: 674 NLVKI-------------------------------------------ISSSLEYLHFGH 690
           N+V +                                           +  +++YLH   
Sbjct: 68  NIVALDDIYESGGHLYLIMQLVSGGELFDRIVEKGFYTERDASRLIFQVLDAVKYLHDLG 127

Query: 691 SIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKG 750
            +             LDED    ISDFG++K+   ED  S  +    T GY+APE   + 
Sbjct: 128 IVHRDLKPENLLYYSLDEDSKIMISDFGLSKM---EDPGSVLSTACGTPGYVAPEVLAQK 184

Query: 751 RVSTRGDVCSFGII 764
             S   D  S G+I
Sbjct: 185 PYSKAVDCWSIGVI 198

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]} Length = 321

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.8 bits (173), Expect = 9e-14
 Identities = 34/192 (17%), Positives = 54/192 (28%), Gaps = 59/192 (30%)

Query: 628 DRFSENNLIGIG------------NGMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNL 675
           +++     +G G            +      K    +        + E  +    RHRN+
Sbjct: 5   EKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVK-GTDQVLVKKEISILNIARHRNI 63

Query: 676 VK-----------------------------------------IISSSLEYLHFGHSIPI 694
           +                                           +    E L F HS  I
Sbjct: 64  LHLHESFESMEELVMIFEFISGLDIFERINTSAFELNEREIVSYVHQVCEALQFLHSHNI 123

Query: 695 IHCDLKPSNVLLDEDMVAH--ISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRV 752
            H D++P N++      +   I +FG A+ L   D             Y APE      V
Sbjct: 124 GHFDIRPENIIYQTRRSSTIKIIEFGQARQLKPGDNF---RLLFTAPEYYAPEVHQHDVV 180

Query: 753 STRGDVCSFGII 764
           ST  D+ S G +
Sbjct: 181 STATDMWSLGTL 192

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]} Length = 335

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.9 bits (173), Expect = 1e-13
 Identities = 33/175 (18%), Positives = 57/175 (32%), Gaps = 58/175 (33%)

Query: 640 NGMEVAVKVFHQQYERALKSFEDECEVRKRI-RHRNLVKIISSS-------------LEY 685
              + A+K+              E E+  R  +  ++V+I+                +E 
Sbjct: 36  TQEKFALKMLQDC-----PKARREVELHWRASQCPHIVRIVDVYENLYAGRKCLLIVMEC 90

Query: 686 ---------------------------------LHFGHSIPIIHCDLKPSNVLLD---ED 709
                                            + + HSI I H D+KP N+L      +
Sbjct: 91  LDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHSINIAHRDVKPENLLYTSKRPN 150

Query: 710 MVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
            +  ++DFG AK  +  +     T    T  Y+APE     +     D+ S G+I
Sbjct: 151 AILKLTDFGFAKETTSHN---SLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVI 202

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]} Length = 346

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.6 bits (172), Expect = 2e-13
 Identities = 45/210 (21%), Positives = 73/210 (34%), Gaps = 68/210 (32%)

Query: 618 FSYHELLRAT----DRFSENNLIGIG------------NGMEVAVKVFHQQY--ERALKS 659
           F   E+ +        + +   +G G             G +VA+K  ++ +  E   K 
Sbjct: 4   FYRQEVTKTAWEVRAVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKR 63

Query: 660 FEDECEVRKRIRHRNLVK------------------------------------------ 677
              E  + K +RH N++                                           
Sbjct: 64  AYRELRLLKHMRHENVIGLLDVFTPDETLDDFTDFYLVMPFMGTDLGKLMKHEKLGEDRI 123

Query: 678 --IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQT 735
             ++   L+ L + H+  IIH DLKP N+ ++ED    I DFG+A+        S+ T  
Sbjct: 124 QFLVYQMLKGLRYIHAAGIIHRDLKPGNLAVNEDCELKILDFGLARQAD-----SEMTGY 178

Query: 736 LATIGYMAPE-YGTKGRVSTRGDVCSFGII 764
           + T  Y APE      R +   D+ S G I
Sbjct: 179 VVTRWYRAPEVILNWMRYTQTVDIWSVGCI 208

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score = 69.3 bits (169), Expect = 2e-13
 Identities = 34/202 (16%), Positives = 68/202 (33%), Gaps = 65/202 (32%)

Query: 628 DRFSENNLIGIG------------NGMEVAVKVFH---------QQYERALKSFEDECEV 666
           + +    ++G G               E AVK+           ++ +   ++   E ++
Sbjct: 3   ENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDI 62

Query: 667 RKRIR-HRNLVKIISSS---------LEY------------------------------- 685
            +++  H N++++  +           +                                
Sbjct: 63  LRKVSGHPNIIQLKDTYETNTFFFLVFDLMKKGELFDYLTEKVTLSEKETRKIMRALLEV 122

Query: 686 LHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQT---LATIGYM 742
           +   H + I+H DLKP N+LLD+DM   ++DFG +  L   ++L +   T   LA     
Sbjct: 123 ICALHKLNIVHRDLKPENILLDDDMNIKLTDFGFSCQLDPGEKLREVCGTPSYLAPEIIE 182

Query: 743 APEYGTKGRVSTRGDVCSFGII 764
                         D+ S G+I
Sbjct: 183 CSMNDNHPGYGKEVDMWSTGVI 204

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.3 bits (161), Expect = 2e-12
 Identities = 26/100 (26%), Positives = 40/100 (40%), Gaps = 6/100 (6%)

Query: 667 RKRIRHRNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLDED-MVAHISDFGIAKLLSG 725
           R  ++           LE +   H+  ++H D+K  N+L+D +     + DFG   LL  
Sbjct: 104 RGALQEELARSFFWQVLEAVRHCHNCGVLHRDIKDENILIDLNRGELKLIDFGSGALLKD 163

Query: 726 EDQLSKQTQTLATIGYMAPEYGTKGRVSTRG-DVCSFGII 764
               +  T    T  Y  PE+    R   R   V S GI+
Sbjct: 164 ----TVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGIL 199

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]} Length = 355

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.7 bits (159), Expect = 5e-12
 Identities = 40/194 (20%), Positives = 61/194 (31%), Gaps = 60/194 (30%)

Query: 628 DRFSENNLIGIG------------NGMEVAVKVFHQQY--ERALKSFEDECEVRKRIRHR 673
            R+     IG G                VA+K   + +  +   K    E  + K + H+
Sbjct: 17  KRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHK 76

Query: 674 NLVK-------------------------------------------IISSSLEYLHFGH 690
           N++                                            ++   L  +   H
Sbjct: 77  NIISLLNVFTPQKTLEEFQDVYLVMELMDANLCQVIQMELDHERMSYLLYQMLCGIKHLH 136

Query: 691 SIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKG 750
           S  IIH DLKPSN+++  D    I DFG+A+       +   T  + T  Y APE     
Sbjct: 137 SAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMM---TPYVVTRYYRAPEVILGM 193

Query: 751 RVSTRGDVCSFGII 764
                 D+ S G I
Sbjct: 194 GYKENVDIWSVGCI 207

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.2 bits (158), Expect = 6e-12
 Identities = 34/178 (19%), Positives = 59/178 (33%), Gaps = 48/178 (26%)

Query: 634 NLIGIGNGMEVAVKVFHQ----QYERALKSFEDECEVRKRIRHRNLV------------- 676
            + G   G   A+KV  +    Q  +  +    E +V + IR    +             
Sbjct: 45  KISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTETKL 104

Query: 677 ----------------------------KIISSSLEYLHFGHSIPIIHCDLKPSNVLLDE 708
                                         +   +  L   H + II+ D+K  N+LLD 
Sbjct: 105 HLILDYINGGELFTHLSQRERFTEHEVQIYVGEIVLALEHLHKLGIIYRDIKLENILLDS 164

Query: 709 DMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPE--YGTKGRVSTRGDVCSFGII 764
           +    ++DFG++K    ++   +      TI YMAP+   G         D  S G++
Sbjct: 165 NGHVVLTDFGLSKEFVADET-ERAYDFCGTIEYMAPDIVRGGDSGHDKAVDWWSLGVL 221

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 362

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 65.4 bits (158), Expect = 7e-12
 Identities = 29/178 (16%), Positives = 62/178 (34%), Gaps = 10/178 (5%)

Query: 595 IKCWKSRTGPSNDGINSPQAIRRFSYHELLRATDRFSENNLIGIGNGMEVAVKVFHQQYE 654
           +K  +     +    +  + ++R +  +  +     + + L  + +         H    
Sbjct: 43  MKIVRGDKVYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFNHKGPNGVHVVMV 102

Query: 655 RALKSFEDECEVRKRIRH-------RNLVKIISSSLEYLHFGHSIPIIHCDLKPSNVLLD 707
             +        ++K           + + K +   L+Y+H    I  IH D+KP NVL++
Sbjct: 103 FEVLGENLLALIKKYEHRGIPLIYVKQISKQLLLGLDYMHRRCGI--IHTDIKPENVLME 160

Query: 708 -EDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGII 764
             D   ++    IA L +        T ++ T  Y +PE           D+ S   +
Sbjct: 161 IVDSPENLIQIKIADLGNACWYDEHYTNSIQTREYRSPEVLLGAPWGCGADIWSTACL 218

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.2 bits (158), Expect = 9e-12
 Identities = 36/199 (18%), Positives = 60/199 (30%), Gaps = 68/199 (34%)

Query: 628 DRFSENNLIGIG------------NGMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNL 675
             +++  +IG G            +G  VA+K   Q           E ++ +++ H N+
Sbjct: 20  VSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRF----KNRELQIMRKLDHCNI 75

Query: 676 VK-------------------------------------------------IISSSLEYL 686
           V+                                                  +      L
Sbjct: 76  VRLRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSL 135

Query: 687 HFGHSIPIIHCDLKPSNVLLDED-MVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPE 745
            + HS  I H D+KP N+LLD D  V  + DFG AK L   +     +   +        
Sbjct: 136 AYIHSFGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGEP--NVSYICSRYYRAPEL 193

Query: 746 YGTKGRVSTRGDVCSFGII 764
                  ++  DV S G +
Sbjct: 194 IFGATDYTSSIDVWSAGCV 212

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.9 bits (151), Expect = 3e-11
 Identities = 54/257 (21%), Positives = 82/257 (31%), Gaps = 16/257 (6%)

Query: 293 IPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGILPKSIGN 352
           +P  I      +   +  N ++          S   C+ L +L +  N L  I   +   
Sbjct: 26  VPVGIP--AASQRIFLHGNRISHVPAA-----SFRACRNLTILWLHSNVLARIDAAAFTG 78

Query: 353 FSLSLETILMANCSISGNIPQVVGNLSNLLVLELGGNNLTGPIPVTFSQLQTLQAFDLTR 412
            +L  +  L  N  +    P     L  L  L L    L    P  F  L  LQ   L  
Sbjct: 79  LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD 138

Query: 413 NKLAGPITDELCHLARLHSLVLQGNKFSGSIPSCLGNLTSVRVLYLGLNIFTSVLSSTIW 472
           N L     D    L  L  L L GN+ S         L S+  L L  N    V      
Sbjct: 139 NALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFR 198

Query: 473 NLKDILFIDVSSNFLDGPLSLDIGNLKVVIGLDFSRNNLSGDIPITIGEGEIPRGGPFAN 532
           +L  ++ + + +N L    +  +  L+ +  L  + N    D               +A 
Sbjct: 199 DLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR---------PLWAW 249

Query: 533 LTAKSFMGNELLCGLPD 549
           L       +E+ C LP 
Sbjct: 250 LQKFRGSSSEVPCSLPQ 266

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.9 bits (151), Expect = 3e-11
 Identities = 46/244 (18%), Positives = 84/244 (34%), Gaps = 9/244 (3%)

Query: 76  SSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQLFGSLSSFIFNMSSMTTIDLSINR 135
           ++ Q + L  N++S    +S      L +L    N L    ++    ++ +  +DLS N 
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 136 LSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEIGNLTKLKEIISTITNSTVCE 195
               +       P+T     +L  L+L    L    P     L  L+ +     N+    
Sbjct: 92  QLRSVD------PATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLY-LQDNALQAL 144

Query: 196 IPREIGNLPYLARLALATNNLVGVVPVTIFNMSALKEISLLNNSLSGSLPSRIDLSLPNV 255
                 +L  L  L L  N +  V       + +L  + L  N ++   P      L  +
Sbjct: 145 PDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFR-DLGRL 203

Query: 256 ETLNLGINSFSGTIPSSITNSSKLSDLELGENLFSGFIPNTIGNLRNLEFGNIADNYLTS 315
            TL L  N+ S     ++     L  L L +N +             L+    + + +  
Sbjct: 204 MTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC-DCRARPLWAWLQKFRGSSSEVPC 262

Query: 316 STPE 319
           S P+
Sbjct: 263 SLPQ 266

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.4 bits (116), Expect = 7e-07
 Identities = 31/179 (17%), Positives = 58/179 (32%), Gaps = 22/179 (12%)

Query: 57  LNISSFNLQGTITPQLGNLSSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQLFGSL 116
           L++    LQ         L++LQ L L  N L      +  ++  L  L    N++    
Sbjct: 110 LHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP 169

Query: 117 SSFIFNMSSMTTIDLSINRLSGELPANICKIPST-----------------LSKCKQLEE 159
                 + S+  + L  NR++   P     +                    L+  + L+ 
Sbjct: 170 ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQY 229

Query: 160 LNLGFNNLSGAIPKEIGNLTKLKEIISTITNSTVCEIPREIGNLPYLARLALATNNLVG 218
           L L  N               L++   + ++   C +P+ +          LA N+L G
Sbjct: 230 LRLNDNPWVCDCR-ARPLWAWLQKFRGS-SSEVPCSLPQRLAGRDL---KRLAANDLQG 283

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.1 bits (144), Expect = 2e-10
 Identities = 38/282 (13%), Positives = 80/282 (28%), Gaps = 24/282 (8%)

Query: 79  QTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQLFGSLSSFIFNMSSMTTIDLSINRLSG 138
           QTLDL+   L  ++   + +   +       + +   L+   F+   +  +DLS + +  
Sbjct: 3   QTLDLTGKNLHPDVTGRLLS-QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEV 60

Query: 139 ELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEIGNLTKLKEIISTITNSTVCEIPR 198
                   +   LS+C +L+ L+L    LS  I   +   + L  +  +  +       +
Sbjct: 61  ST------LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQ 114

Query: 199 E-------IGNLPYLARLALATNNLVGVVPVTIFNMSALKEISLLNNSLSGSLPSRIDLS 251
                   +  L           ++   V      ++ L       N     L + +   
Sbjct: 115 TLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRC 174

Query: 252 LPNVETLNLGINSFSGTIPSSITNSSKLSDLEL-GENLFSGFIPNTIGNLRNLEFGNIAD 310
              V                     + L  L L             +G +  L+   +  
Sbjct: 175 PNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFG 234

Query: 311 NYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGILPKSIGN 352
                +   L           L++     +    I   +IGN
Sbjct: 235 IVPDGTLQLL-----KEALPHLQIN---CSHFTTIARPTIGN 268

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.8 bits (112), Expect = 2e-06
 Identities = 41/267 (15%), Positives = 86/267 (32%), Gaps = 6/267 (2%)

Query: 44  GITCDVNSHRVIGLNISSFNLQGTITPQLGNLSSLQTLDLSHNKLSGNIPSSIF-NMHTL 102
            +T  + S  VI        +   +  +  +   +Q +DLS++ +  +    I      L
Sbjct: 15  DVTGRLLSQGVIAFRCPRSFMDQPL-AEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKL 73

Query: 103 KLLDFSDNQLFGSLSSFIFNMSSMTTIDLSINR-LSGELPANICKIPSTLSKCKQLEELN 161
           + L     +L   + + +   S++  ++LS     S      +    S L +       +
Sbjct: 74  QNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFD 133

Query: 162 LGFNNLSGAIPKEIGNLTKLKEIISTITNSTVCEIPREIGNLPYLARLALATNNLVGVVP 221
               ++  A+      +T+L                        +      +  L     
Sbjct: 134 FTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCF 193

Query: 222 VTIFNMSALKEISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSITNSSKLSD 281
              F ++ L+ +SL                +P ++TL +      GT+         L  
Sbjct: 194 QEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEA---LPH 250

Query: 282 LELGENLFSGFIPNTIGNLRNLEFGNI 308
           L++  + F+     TIGN +N E   I
Sbjct: 251 LQINCSHFTTIARPTIGNKKNQEIWGI 277

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]} Length = 348

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.3 bits (145), Expect = 3e-10
 Identities = 38/196 (19%), Positives = 60/196 (30%), Gaps = 62/196 (31%)

Query: 627 TDRFSENNLIGIG------------NGMEVAVKVFHQQY--ERALKSFEDECEVRKRIRH 672
            +R+   + +G G             G+ VAVK   + +      K    E  + K ++H
Sbjct: 17  PERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKH 76

Query: 673 RNLVKIISSS--------------------------------------------LEYLHF 688
            N++ ++                                               L  L +
Sbjct: 77  ENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKY 136

Query: 689 GHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGT 748
            HS  IIH DLKPSN+ ++ED    I DFG+A+    E                      
Sbjct: 137 IHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEM----TGYVATRWYRAPEIMLN 192

Query: 749 KGRVSTRGDVCSFGII 764
               +   D+ S G I
Sbjct: 193 WMHYNQTVDIWSVGCI 208

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]} Length = 328

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

 Score = 59.1 bits (142), Expect = 6e-10
 Identities = 33/191 (17%), Positives = 64/191 (33%), Gaps = 60/191 (31%)

Query: 628 DRFSENNLIGIG------------NGMEVAVKVFHQQYERALKSFEDECEVRKRIR-HRN 674
           D +     +G G            N  +V VK+     +   K  + E ++ + +R   N
Sbjct: 35  DDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPVKK---KKIKREIKILENLRGGPN 91

Query: 675 LVK---------------------------------------IISSSLEYLHFGHSIPII 695
           ++                                         +   L+ L + HS+ I+
Sbjct: 92  IITLADIVKDPVSRTPALVFEHVNNTDFKQLYQTLTDYDIRFYMYEILKALDYCHSMGIM 151

Query: 696 HCDLKPSNVLLD-EDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGR-VS 753
           H D+KP NV++D E     + D+G+A+         +    +A+  +  PE     +   
Sbjct: 152 HRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPGQ---EYNVRVASRYFKGPELLVDYQMYD 208

Query: 754 TRGDVCSFGII 764
              D+ S G +
Sbjct: 209 YSLDMWSLGCM 219

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 54.7 bits (131), Expect = 1e-09
 Identities = 32/125 (25%), Positives = 50/125 (40%), Gaps = 12/125 (9%)

Query: 57  LNISSFNLQGTITPQLGNLSSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQLFGSL 116
           L+++  +L  T+   L  L  +  LDLSHN+L    P ++  +  L++L  SDN L    
Sbjct: 3   LHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALENVD 59

Query: 117 SSFIFNMSSMTTIDLSINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEIG 176
                    +  + L  NRL              L  C +L  LNL  N+L         
Sbjct: 60  GVANLPR--LQELLLCNNRLQQ------SAAIQPLVSCPRLVLLNLQGNSLCQ-EEGIQE 110

Query: 177 NLTKL 181
            L ++
Sbjct: 111 RLAEM 115

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.4 bits (86), Expect = 0.001
 Identities = 20/112 (17%), Positives = 38/112 (33%), Gaps = 10/112 (8%)

Query: 282 LELGENLFSGFIPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNP 341
           L L     +  +   +  L  +   +++ N L +  P L+ L  L   +         + 
Sbjct: 3   LHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQ--------ASD 52

Query: 342 LDGILPKSIGNFSLSLETILMANCSISGNIPQVVGNLSNLLVLELGGNNLTG 393
                   + N     E +L  N        Q + +   L++L L GN+L  
Sbjct: 53  NALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.0 bits (85), Expect = 0.001
 Identities = 23/111 (20%), Positives = 42/111 (37%), Gaps = 10/111 (9%)

Query: 375 VGNLSNLLVLELGGNNLTGPIPVTFSQLQTLQAFDLTRNKLAGPITDELCHLARLHSLVL 434
           +  L  +  L+L  N L    P   + L+ L+    + N       D + +L RL  L+L
Sbjct: 16  LEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNA--LENVDGVANLPRLQELLL 72

Query: 435 QGNKF-SGSIPSCLGNLTSVRVLYLGLNIFTSV------LSSTIWNLKDIL 478
             N+    +    L +   + +L L  N           L+  + ++  IL
Sbjct: 73  CNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 123

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.5 bits (132), Expect = 6e-09
 Identities = 35/208 (16%), Positives = 58/208 (27%), Gaps = 18/208 (8%)

Query: 47  CDV-NSHRVIGLNISSFNLQGTITPQLGNLSSLQTLDLSHNKLSGNIPSSIFNMHTLKLL 105
           C+V      + +N    NL   + P L        L LS N L     +++     L  L
Sbjct: 4   CEVSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQL 60

Query: 106 DFSDNQLFGSLSSFIFNMSSMTTIDLSINRLSGELPANICKIPSTLSKCKQLEEL----- 160
           +    +L          +     +  +  +    L   +  +        +L  L     
Sbjct: 61  NLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGAL 120

Query: 161 --------NLGFNNLSGAIPKEIGNLTKLKEIISTITNSTVCEIPREIGNLPYLARLALA 212
                        N    +P  +   T   E +S   N+        +  L  L  L L 
Sbjct: 121 RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQ 180

Query: 213 TNNLVGVVPVTIFNMSALKEISLLNNSL 240
            N+L   +P   F    L    L  N  
Sbjct: 181 ENSLY-TIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.4 bits (124), Expect = 7e-08
 Identities = 39/222 (17%), Positives = 68/222 (30%), Gaps = 21/222 (9%)

Query: 122 NMSSMTTIDLSINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEIGNLTKL 181
            ++S   ++     L+  LP ++ K             L+L  N L       +   T+L
Sbjct: 8   KVASHLEVNCDKRNLT-ALPPDLPK---------DTTILHLSENLLYTFSLATLMPYTRL 57

Query: 182 KEIISTITNSTVCEIPREIGNLPYLARLALATNNLVGVVPVTIFNMSALKEISLLNNSLS 241
            ++       T  ++   +  L  L        +L  +              + L     
Sbjct: 58  TQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLT---- 113

Query: 242 GSLPSRIDLSLPNVETLNLGINSFSGTIPSSITNSSKLSDLELGENLFSGFIPNTIGNLR 301
            SLP      L  ++ L L  N      P  +T + KL  L L  N  +      +  L 
Sbjct: 114 -SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLE 172

Query: 302 NLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLD 343
           NL+   + +N L +                L    + GNP  
Sbjct: 173 NLDTLLLQENSLYTIPKGFF------GSHLLPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.3 bits (116), Expect = 6e-07
 Identities = 42/217 (19%), Positives = 70/217 (32%), Gaps = 14/217 (6%)

Query: 223 TIFNMSALKEISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSITNSSKLSDL 282
            +  +++  E++    +L+ +LP  +     +   L+L  N       +++   ++L+ L
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQL 60

Query: 283 ELGENLFSGFIPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPL 342
            L             G L  L           S     S          L VL V+ N L
Sbjct: 61  NLDR--AELTKLQVDGTLPVL------GTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRL 112

Query: 343 DGILPKSIGNFSLSLETILMANCSISGNIPQVVGNLSNLLVLELGGNNLTGPIPVTFSQL 402
             +   ++       E  L  N  +    P ++     L  L L  NNLT       + L
Sbjct: 113 TSLPLGALRGLGELQELYLKGNE-LKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGL 171

Query: 403 QTLQAFDLTRNKLAGPITDELCHLARLHSLVLQGNKF 439
           + L    L  N L   I         L    L GN +
Sbjct: 172 ENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.3 bits (103), Expect = 3e-05
 Identities = 20/104 (19%), Positives = 30/104 (28%), Gaps = 3/104 (2%)

Query: 9   QHQQALLALKAHISYDHTNLFARNWTSSTSVCIWIGITCDVNSHRVIGLNISSFNLQGTI 68
                L +L          L       +    +  G+         +  ++++ NL    
Sbjct: 107 VSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKL--SLANNNLTELP 164

Query: 69  TPQLGNLSSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQL 112
              L  L +L TL L  N L   IP   F  H L       N  
Sbjct: 165 AGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.2 bits (100), Expect = 6e-05
 Identities = 42/213 (19%), Positives = 63/213 (29%), Gaps = 16/213 (7%)

Query: 251 SLPNVETLNLGINSFSGTIPSSITNSSKLSDLELGENLFSGFIPNTIGNLRNLEFGNIAD 310
           S   V      + +    +P   T       L L ENL   F   T+     L   N+ D
Sbjct: 11  SHLEVNCDKRNLTALPPDLPKDTTI------LHLSENLLYTFSLATLMPYTRLTQLNL-D 63

Query: 311 NYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGILPKSIGNFSLSLETILMANCSISGN 370
               +       L  L         + +   L   LP              ++   ++  
Sbjct: 64  RAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLD--------VSFNRLTSL 115

Query: 371 IPQVVGNLSNLLVLELGGNNLTGPIPVTFSQLQTLQAFDLTRNKLAGPITDELCHLARLH 430
               +  L  L  L L GN L    P   +    L+   L  N L       L  L  L 
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLD 175

Query: 431 SLVLQGNKFSGSIPSCLGNLTSVRVLYLGLNIF 463
           +L+LQ N    +IP        +   +L  N +
Sbjct: 176 TLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]} Length = 191

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 51.7 bits (123), Expect = 5e-08
 Identities = 22/135 (16%), Positives = 35/135 (25%), Gaps = 48/135 (35%)

Query: 640 NGMEVAVKVFH----------QQYERALKSFEDECEVRKRIRHRNLVK------------ 677
              E  VK             ++ +     F        R   R L K            
Sbjct: 23  KFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQGLAVPKVYAW 82

Query: 678 -------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVA 712
                                    ++   LE +   +   I+H DL   NVL+ E+ + 
Sbjct: 83  EGNAVLMELIDAKELYRVRVENPDEVLDMILEEVAKFYHRGIVHGDLSQYNVLVSEEGI- 141

Query: 713 HISDFGIAKLLSGED 727
            I DF  +  +  E 
Sbjct: 142 WIIDFPQSVEVGEEG 156

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.7 bits (124), Expect = 1e-07
 Identities = 21/96 (21%), Positives = 37/96 (38%), Gaps = 6/96 (6%)

Query: 98  NMHTLKLLDFSDNQL----FGSLSSFIFNMSSMTTIDLSINRLSGELPANICKIPSTLSK 153
               L++L  +D  +      SL++ +    S+  +DLS N L       + +  S    
Sbjct: 367 PGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVE--SVRQP 424

Query: 154 CKQLEELNLGFNNLSGAIPKEIGNLTKLKEIISTIT 189
              LE+L L     S  +   +  L K K  +  I+
Sbjct: 425 GCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVIS 460

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.4 bits (118), Expect = 6e-07
 Identities = 15/80 (18%), Positives = 26/80 (32%), Gaps = 4/80 (5%)

Query: 102 LKLLDFSDNQL-FGSLSSFIFNMSSMTTIDLSINRLSGELPANICKIPSTLSKCKQLEEL 160
           ++ LD    +L     +  +  +     + L    L+     +I    S L     L EL
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDIS---SALRVNPALAEL 60

Query: 161 NLGFNNLSGAIPKEIGNLTK 180
           NL  N L       +    +
Sbjct: 61  NLRSNELGDVGVHCVLQGLQ 80

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.1 bits (107), Expect = 1e-05
 Identities = 16/92 (17%), Positives = 29/92 (31%), Gaps = 10/92 (10%)

Query: 57  LNISSFNLQGT------ITPQLGNLSSLQTLDLSHNKLSG----NIPSSIFNMHTLKLLD 106
           L+I S ++Q            L  L   Q + L    L+     +I S++     L  L+
Sbjct: 2   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 61

Query: 107 FSDNQLFGSLSSFIFNMSSMTTIDLSINRLSG 138
              N+L       +       +  +    L  
Sbjct: 62  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQN 93

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.6 bits (103), Expect = 3e-05
 Identities = 13/73 (17%), Positives = 26/73 (35%), Gaps = 8/73 (10%)

Query: 117 SSFIFNMSSMTTIDLSINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEIG 176
                  S +  + L+   +S     +   + +TL     L EL+L  N L  A   ++ 
Sbjct: 362 QGLGQPGSVLRVLWLADCDVSDS---SCSSLAATLLANHSLRELDLSNNCLGDAGILQLV 418

Query: 177 -----NLTKLKEI 184
                    L+++
Sbjct: 419 ESVRQPGCLLEQL 431

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (100), Expect = 8e-05
 Identities = 15/87 (17%), Positives = 30/87 (34%), Gaps = 5/87 (5%)

Query: 354 SLSLETILMANCSISGN-IPQVVGNLSNLLVLELGGNNLTG----PIPVTFSQLQTLQAF 408
           SL ++++ +    +S     +++  L    V+ L    LT      I         L   
Sbjct: 1   SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60

Query: 409 DLTRNKLAGPITDELCHLARLHSLVLQ 435
           +L  N+L       +    +  S  +Q
Sbjct: 61  NLRSNELGDVGVHCVLQGLQTPSCKIQ 87

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (93), Expect = 5e-04
 Identities = 15/102 (14%), Positives = 29/102 (28%), Gaps = 9/102 (8%)

Query: 20  HISYDHTNLFARNWTSSTSVCIWIGITCDVNSHRVIGLNISSFNLQGT----ITPQLGNL 75
             +     L   N     +    +          +  L ++  ++  +    +   L   
Sbjct: 337 AQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLAN 396

Query: 76  SSLQTLDLSHNKLSGNIPSSIF-----NMHTLKLLDFSDNQL 112
            SL+ LDLS+N L       +          L+ L   D   
Sbjct: 397 HSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYW 438

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (91), Expect = 0.001
 Identities = 16/84 (19%), Positives = 33/84 (39%), Gaps = 5/84 (5%)

Query: 299 NLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGI----LPKSIGNFS 354
               L    +AD  ++ S+   S  ++L     L+ L ++ N L       L +S+    
Sbjct: 367 PGSVLRVLWLADCDVSDSSCS-SLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPG 425

Query: 355 LSLETILMANCSISGNIPQVVGNL 378
             LE +++ +   S  +   +  L
Sbjct: 426 CLLEQLVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (89), Expect = 0.002
 Identities = 10/75 (13%), Positives = 27/75 (36%), Gaps = 4/75 (5%)

Query: 230 LKEISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSG----TIPSSITNSSKLSDLELG 285
           ++ + +    LS +  + +   L   + + L     +      I S++  +  L++L L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 286 ENLFSGFIPNTIGNL 300
            N       + +   
Sbjct: 64  SNELGDVGVHCVLQG 78

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (89), Expect = 0.002
 Identities = 15/84 (17%), Positives = 30/84 (35%), Gaps = 8/84 (9%)

Query: 226 NMSALKEISLLNNSLSGSLPSRIDLSL---PNVETLNLGINSFSGTIPSSI-----TNSS 277
             S L+ + L +  +S S  S +  +L    ++  L+L  N         +         
Sbjct: 367 PGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGC 426

Query: 278 KLSDLELGENLFSGFIPNTIGNLR 301
            L  L L +  +S  + + +  L 
Sbjct: 427 LLEQLVLYDIYWSEEMEDRLQALE 450

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (87), Expect = 0.003
 Identities = 20/118 (16%), Positives = 35/118 (29%), Gaps = 27/118 (22%)

Query: 125 SMTTIDLSINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEIGNLTKLKEI 184
            + ++D+    LS        +    L   +Q + + L    L+ A  K+I +       
Sbjct: 3   DIQSLDIQCEELSDA------RWAELLPLLQQCQVVRLDDCGLTEARCKDISSA------ 50

Query: 185 ISTITNSTVCEIPREIGNLPYLARLALATNNLVGVVPVTIFNMSALKEISLLNNSLSG 242
                          +   P LA L L +N L  V    +          +   SL  
Sbjct: 51  ---------------LRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQN 93

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 49.4 bits (116), Expect = 9e-07
 Identities = 18/110 (16%), Positives = 34/110 (30%), Gaps = 9/110 (8%)

Query: 40  CIWIGITCDVNSHRVIGLNISSFNLQGTITPQLGNLSSLQTLDLSHNKLSGNIPSSIFNM 99
            + +          +             I        SL+ L++S+NKL   +P+     
Sbjct: 248 FLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPR- 305

Query: 100 HTLKLLDFSDNQLFGSLSSFIFNMSSMTTIDLSINRLSGELPANICKIPS 149
             L+ L  S N     L+       ++  + +  N L  E P     +  
Sbjct: 306 --LERLIASFNH----LAEVPELPQNLKQLHVEYNPLR-EFPDIPESVED 348

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 47.9 bits (112), Expect = 3e-06
 Identities = 19/94 (20%), Positives = 35/94 (37%), Gaps = 10/94 (10%)

Query: 214 NNLVGVVPVTIFNMSALKEISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSI 273
           N     +        +L+E+++ NN L   LP+      P +E L    N  +  +P   
Sbjct: 270 NASSNEIRSLCDLPPSLEELNVSNNKLI-ELPA----LPPRLERLIASFNHLA-EVPELP 323

Query: 274 TNSSKLSDLELGENLFSGFIPNTIGNLRNLEFGN 307
            N   L  L +  N      P+   ++ +L   +
Sbjct: 324 QN---LKQLHVEYNPLRE-FPDIPESVEDLRMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 47.1 bits (110), Expect = 4e-06
 Identities = 24/112 (21%), Positives = 43/112 (38%), Gaps = 17/112 (15%)

Query: 95  SIFNMHTLKLLDFSDNQLFGSLSSFIFNMSSMTTIDLSINRLSGELPANICKIPSTLSKC 154
               +  L    +  N     + S      S+  +++S N+L  ELPA   +        
Sbjct: 255 IFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPR-------- 305

Query: 155 KQLEELNLGFNNLSGAIPKEIGNLTKLKEIISTITNSTVCEIPREIGNLPYL 206
             LE L   FN+L+  +P+   NL +L      +  + + E P    ++  L
Sbjct: 306 --LERLIASFNHLA-EVPELPQNLKQLH-----VEYNPLREFPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 39.8 bits (91), Expect = 0.001
 Identities = 16/94 (17%), Positives = 31/94 (32%), Gaps = 5/94 (5%)

Query: 20  HISYDHTNLFARNWTSSTSVCIWIGITCDVNSHRVIGLNISSFNLQGT-ITPQLGNLSSL 78
                  N+F+       ++      + ++ S   +  ++   N+    +         L
Sbjct: 247 TFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPALPPRL 306

Query: 79  QTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQL 112
           + L  S N L+  +P    N   LK L    N L
Sbjct: 307 ERLIASFNHLA-EVPELPQN---LKQLHVEYNPL 336

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 39.4 bits (90), Expect = 0.001
 Identities = 16/79 (20%), Positives = 30/79 (37%), Gaps = 10/79 (12%)

Query: 328 NCKKLKVLIVTGNPLDGILPKSIGNFSLSLETILMANCSISGNIPQVVGNLSNLLVLELG 387
               L+ L V+ N L  + P         LE ++ +   ++  +P+      NL  L + 
Sbjct: 282 LPPSLEELNVSNNKLIEL-PALPPR----LERLIASFNHLA-EVPE---LPQNLKQLHVE 332

Query: 388 GNNLTGPIPVTFSQLQTLQ 406
            N L    P     ++ L+
Sbjct: 333 YNPLRE-FPDIPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 38.3 bits (87), Expect = 0.003
 Identities = 13/61 (21%), Positives = 26/61 (42%), Gaps = 5/61 (8%)

Query: 76  SSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQLFGSLSSFIFNMSSMTTIDLSINR 135
                L+L++  LS ++P    +   L+ L  S N L   L     ++ S+   + ++  
Sbjct: 38  RQAHELELNNLGLS-SLPELPPH---LESLVASCNSL-TELPELPQSLKSLLVDNNNLKA 92

Query: 136 L 136
           L
Sbjct: 93  L 93

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 38.3 bits (87), Expect = 0.003
 Identities = 19/87 (21%), Positives = 34/87 (39%), Gaps = 6/87 (6%)

Query: 389 NNLTGPIPVTFSQLQTLQAFDLTRNKLAGPITDELCHLARLHSLVLQGNKFSGSIPSCLG 448
           N  +  I        +L+  +++ NKL     +      RL  L+   N  +  +P    
Sbjct: 270 NASSNEIRSLCDLPPSLEELNVSNNKL----IELPALPPRLERLIASFNHLA-EVPELPQ 324

Query: 449 NLTSVRVLYLGLNIFTSVLSSTIWNLK 475
           NL  + V Y  L  F  +  S + +L+
Sbjct: 325 NLKQLHVEYNPLREFPDIPES-VEDLR 350

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.9 bits (105), Expect = 6e-06
 Identities = 23/140 (16%), Positives = 41/140 (29%), Gaps = 7/140 (5%)

Query: 70  PQLGNLSSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQLFGSLSSFIFNMSSMTTI 129
            Q  N    + LDL   K+   I +    +     +DFSDN++          +  + T+
Sbjct: 12  AQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRK--LDGFPLLRRLKTL 68

Query: 130 DLSINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEIGNLTKLKEIISTIT 189
            ++ NR+          +P           L      L    P           I+    
Sbjct: 69  LVNNNRICRIGEGLDQALPDLTELILTNNSL----VELGDLDPLASLKSLTYLCILRNPV 124

Query: 190 NSTVCEIPREIGNLPYLARL 209
            +        I  +P +  L
Sbjct: 125 TNKKHYRLYVIYKVPQVRVL 144

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (85), Expect = 0.003
 Identities = 25/145 (17%), Positives = 48/145 (33%), Gaps = 11/145 (7%)

Query: 271 SSITNSSKLSDLELGENLFSGFIPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCK 330
           +  TN+ +  +L+L        I N    L   +  + +DN +         L      +
Sbjct: 12  AQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-------KLDGFPLLR 63

Query: 331 KLKVLIVTGNPLDGILPKSIGNFSLSLETILMANCSISGNIPQVVGNLSNLLVLELGGNN 390
           +LK L+V  N +  I            E IL  N  +       + +L +L  L +  N 
Sbjct: 64  RLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNP 123

Query: 391 ---LTGPIPVTFSQLQTLQAFDLTR 412
                        ++  ++  D  +
Sbjct: 124 VTNKKHYRLYVIYKVPQVRVLDFQK 148

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 44.9 bits (104), Expect = 3e-05
 Identities = 43/321 (13%), Positives = 102/321 (31%), Gaps = 20/321 (6%)

Query: 102 LKLLDFSDNQLFGSLSSFIFNMSSMTTIDLSINRLSGELPANICKIPSTLSKCKQLEELN 161
           LKL   +      S+ + +    S+  I LS N +  E    + +  ++    +  E  +
Sbjct: 10  LKLDAITTEDE-KSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSD 68

Query: 162 LGFNNLSGAIP-------KEIGNLTKLKEIISTITNSTVCEIPREIGNLPYLARLALATN 214
           +    +   IP       + +    KL  +  +            I  L     L     
Sbjct: 69  IFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYL 128

Query: 215 NLVGVVPVTIFNMSALKEISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSIT 274
           +  G+ P     ++   +   +N     + P R  +   N                  + 
Sbjct: 129 HNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLL 188

Query: 275 NSSKLSDLELGENLFSGFIPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKV 334
           ++ K+    +        +   +   + L+  ++ DN  T          +L +   L+ 
Sbjct: 189 HTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALA-IALKSWPNLRE 247

Query: 335 LIVTGNPLDGILPKSIGNF-----SLSLETILMANCSISGNIPQ-----VVGNLSNLLVL 384
           L +    L      ++ +      ++ L+T+ +    I  +  +     +   + +LL L
Sbjct: 248 LGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFL 307

Query: 385 ELGGNNLTGPIPVTFSQLQTL 405
           EL GN  +        +++ +
Sbjct: 308 ELNGNRFSE-EDDVVDEIREV 327

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 40.6 bits (93), Expect = 5e-04
 Identities = 41/304 (13%), Positives = 81/304 (26%), Gaps = 17/304 (5%)

Query: 57  LNISSFNLQGTITPQLGNLSSLQTLDLSHNKLSGN----IPSSIFNMHTLKLLDFSDNQL 112
           L+  +   + ++   L    S++ + LS N +       +  +I +   L++ +FSD   
Sbjct: 12  LDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFT 71

Query: 113 FGSLSSFIFNMSSMTTIDLSINRL-------SGELPANICKIPSTLSKCKQLEELNLGFN 165
                     +  +    L   +L       +   P     +   LSK   LE L L  N
Sbjct: 72  GRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNN 131

Query: 166 NLSGAIPKEIGNLTKLKEIISTITNSTVCEIPREIGNLPYLARLALATNNLVGVVPVTIF 225
            L      +I    +   +     N+          N      +            +   
Sbjct: 132 GLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTV 191

Query: 226 NMSALKEISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSITNSSKLSDLELG 285
            M            L     +            N   +  S  +  ++ +   L +L L 
Sbjct: 192 KMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLN 251

Query: 286 ENLFSGFIPNTIGN------LRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTG 339
           + L S      + +         L+   +  N +                  L  L + G
Sbjct: 252 DCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNG 311

Query: 340 NPLD 343
           N   
Sbjct: 312 NRFS 315

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 39.1 bits (89), Expect = 0.002
 Identities = 47/351 (13%), Positives = 96/351 (27%), Gaps = 44/351 (12%)

Query: 125 SMTTIDLSINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSG----AIPKEIGNLTK 180
           S+    L ++ ++ E   +   + + L +   ++E+ L  N +       + + I +   
Sbjct: 4   SIEGKSLKLDAITTE---DEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKD 60

Query: 181 LKEI---------ISTITNSTVCEIPREIGNLPYLARLALATNNLVGVVPVTIFNMSALK 231
           L+           +       +  + + +   P L  + L+ N                K
Sbjct: 61  LEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQ-EPLIDFLSK 119

Query: 232 EISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSITNSSKLSDLELGENLFSG 291
              L +  L  +       +        L +N  +   P   +     + LE G      
Sbjct: 120 HTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWA 179

Query: 292 FIPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGILPKSIG 351
               +   L  ++               L  L+     K L +   T   L         
Sbjct: 180 KTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIAL 239

Query: 352 NFSLSLETILMANCSISGNIPQVVGN------LSNLLVLELGGNNLTGPIPVTFSQLQTL 405
               +L  + + +C +S      V +         L  L L  N +      T   +   
Sbjct: 240 KSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTV--- 296

Query: 406 QAFDLTRNKLAGPITDELCHLARLHSLVLQGNKFS--GSIPSCLGNLTSVR 454
                               +  L  L L GN+FS    +   +  + S R
Sbjct: 297 ----------------IDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTR 331

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 38.3 bits (87), Expect = 0.003
 Identities = 16/93 (17%), Positives = 32/93 (34%), Gaps = 22/93 (23%)

Query: 71  QLGNLSSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQLFGSLSSFIFNMSSMTTID 130
                  LQTL L +N++  +   ++                    +     M  +  ++
Sbjct: 268 SKLENIGLQTLRLQYNEIELDAVRTL-------------------KTVIDEKMPDLLFLE 308

Query: 131 LSINRLSGELPANICKIPSTLSKCK--QLEELN 161
           L+ NR   E    + +I    S     +L+EL+
Sbjct: 309 LNGNRF-SEEDDVVDEIREVFSTRGRGELDELD 340

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.5 bits (101), Expect = 4e-05
 Identities = 32/222 (14%), Positives = 71/222 (31%), Gaps = 15/222 (6%)

Query: 45  ITCDVNSHRVIGLNISSFNLQGTITPQLGNLSSLQTLDLSHNKLSGNIPSSIFNMHTLKL 104
           I  D      I +     N+  T+T    +L  + TL      ++      +  ++ L  
Sbjct: 12  IFPDPALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTT--IEGVQYLNNLIG 67

Query: 105 LDFSDNQLFGSLSSFIFNMSSMTTIDLSINRLSGELPANICKIPSTLSKCKQLEELNLGF 164
           L+  DNQ+            +   +  +  +    +          L+  +  +   L  
Sbjct: 68  LELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAG 127

Query: 165 NNLSGAIPKEIGNLTKLKEIISTITNSTV------CEIPREIGNLPYLARLALATNNLVG 218
            +    +  ++  +T +  +        +            + NL  L  L    N +  
Sbjct: 128 LSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISD 187

Query: 219 VVPVTIFNMSALKEISLLNNSLSGSLPSRIDLSLPNVETLNL 260
           + P  + ++  L E+ L NN +S   P     +  N+  + L
Sbjct: 188 ISP--LASLPNLIEVHLKNNQISDVSPLA---NTSNLFIVTL 224

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.8 bits (94), Expect = 3e-04
 Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 3/42 (7%)

Query: 70  PQLGNLSSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQ 111
             L +L +L  + L +N++S   P  + N   L ++  + NQ
Sbjct: 189 SPLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT-NQ 227

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.0 bits (92), Expect = 5e-04
 Identities = 32/215 (14%), Positives = 70/215 (32%), Gaps = 11/215 (5%)

Query: 202 NLPYLARLALATNNLVGVVPVTIFNMSALKEISLLNNSLS-----GSLPSRIDLSLPNVE 256
            L    ++A   +N+   V     ++  +  +S     ++       L + I L L + +
Sbjct: 17  ALANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQ 74

Query: 257 TLNLGINSFSGTIPSSITNSSKLSDLELGENLFSGFIPNTIGNLRNLEFGNIADNYLTSS 316
             +L        I     + + L ++     L S    +               + L   
Sbjct: 75  ITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVL 134

Query: 317 TPELSFLSSLTNCKKLKVLIVTGNPLDGILPKSIGNFSLSLETILMANCSISGNIPQVVG 376
             +L+ +++++    L  L         +   +       L T+   +  IS   P  + 
Sbjct: 135 YLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--LA 192

Query: 377 NLSNLLVLELGGNNLTGPIPVTFSQLQTLQAFDLT 411
           +L NL+ + L  N ++   P   +    L    LT
Sbjct: 193 SLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT 225

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.8 bits (96), Expect = 1e-04
 Identities = 10/77 (12%), Positives = 22/77 (28%)

Query: 40  CIWIGITCDVNSHRVIGLNISSFNLQGTITPQLGNLSSLQTLDLSHNKLSGNIPSSIFNM 99
              I       +         + NL+          S    LD+S  ++       + N+
Sbjct: 165 IQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENL 224

Query: 100 HTLKLLDFSDNQLFGSL 116
             L+     + +   +L
Sbjct: 225 KKLRARSTYNLKKLPTL 241

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (85), Expect = 0.003
 Identities = 10/58 (17%), Positives = 19/58 (32%)

Query: 357 LETILMANCSISGNIPQVVGNLSNLLVLELGGNNLTGPIPVTFSQLQTLQAFDLTRNK 414
            E  L  N ++      V    S  ++L++    +          L+ L+A      K
Sbjct: 179 DELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (95), Expect = 2e-04
 Identities = 25/107 (23%), Positives = 45/107 (42%), Gaps = 3/107 (2%)

Query: 57  LNISSFNLQGTITPQLGNLSSLQTLDLSHNKLSG--NIPSSIFNMHTLKLLDFSDNQLFG 114
           LN  S ++  T+     N+  L +L+LS+N+L    ++ S +     LK+L+ S N+L  
Sbjct: 47  LNRRS-SMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS 105

Query: 115 SLSSFIFNMSSMTTIDLSINRLSGELPANICKIPSTLSKCKQLEELN 161
                      +  + L  N LS         I +   +  +L  L+
Sbjct: 106 ERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRERFPKLLRLD 152

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.8 bits (92), Expect = 4e-04
 Identities = 24/127 (18%), Positives = 45/127 (35%), Gaps = 8/127 (6%)

Query: 140 LPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEIGNLTKLKEI-ISTITNSTVCEIPR 198
           L     +    L        LN   ++++  +     N+ +L  + +S      + ++  
Sbjct: 27  LDLKGLRSDPDLVAQNIDVVLNRR-SSMAATLRIIEENIPELLSLNLSNNRLYRLDDMSS 85

Query: 199 EIGNLPYLARLALATNNLVGVVPVTIFNMSALKEISLLNNSLSGSLP------SRIDLSL 252
            +   P L  L L+ N L     +       L+E+ L  NSLS +        S I    
Sbjct: 86  IVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRERF 145

Query: 253 PNVETLN 259
           P +  L+
Sbjct: 146 PKLLRLD 152

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.1 bits (95), Expect = 2e-04
 Identities = 26/199 (13%), Positives = 67/199 (33%), Gaps = 12/199 (6%)

Query: 45  ITCDVNSHRVIGLNISSFNLQGTITPQLGNLSSLQTLDLSHNKLSGNIPSSIFNMHTLKL 104
           I  D      I  N+   ++   +T     L+S+  +  +++ +       I  +  +  
Sbjct: 17  IFSDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQG--IQYLPNVTK 72

Query: 105 LDFSDNQL-----FGSLSSFIFNMSSMTTIDLSINRLSGELPANICKIPSTLSKCKQLEE 159
           L  + N+L       +L +  +       +    +    +   ++    + +S    L  
Sbjct: 73  LFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVH 132

Query: 160 LNLGFNNLSGA-IPKEIGNLTKLKEIISTITNSTVCEIPREIGNLPYLARLALATNNLVG 218
           L    +   G     +I  L++L ++ +             +  L  L  L L+ N++  
Sbjct: 133 LPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISD 192

Query: 219 VVPVTIFNMSALKEISLLN 237
           +    +  +  L  + L +
Sbjct: 193 LRA--LAGLKNLDVLELFS 209

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.7 bits (86), Expect = 0.003
 Identities = 19/92 (20%), Positives = 32/92 (34%), Gaps = 3/92 (3%)

Query: 20  HISYDHTNLFARNWTSSTSVCIWIGITCDVNSHRVIGLNISSFNLQGTITPQLGNLSSLQ 79
           +   D   L       S  +         V S       +S  + Q +    L  L+ LQ
Sbjct: 122 NGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQ 181

Query: 80  TLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQ 111
            L LS N +S     ++  +  L +L+   +Q
Sbjct: 182 NLYLSKNHISD--LRALAGLKNLDVLELF-SQ 210

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

 Score = 38.5 bits (88), Expect = 0.001
 Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 3/62 (4%)

Query: 123 MSSMTTIDLSINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEIGNLTKLK 182
             S+   +     L G +P  I K+ +TLS  K  + L L  NN+   I   +  +  L+
Sbjct: 17  RKSVVATEAEKVELHGMIP-PIEKMDATLSTLKACKHLALSTNNIE-KIS-SLSGMENLR 73

Query: 183 EI 184
            +
Sbjct: 74  IL 75

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	823
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	100.0
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	100.0
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.97
d1nvra_	271	Cell cycle checkpoint kinase chk1 {Human (Homo sap	99.96
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.96
d1uwha_	276	B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1uu3a_	288	3-phosphoinositide dependent protein kinase-1 Pdk1	99.96
d1yhwa1	293	pak1 {Human (Homo sapiens) [TaxId: 9606]}	99.96
d2j4za1	263	Aurora-related kinase 1 (aurora-2) {Human (Homo sa	99.96
d1fota_	316	cAMP-dependent PK, catalytic subunit {Baker's yeas	99.96
d1jpaa_	299	ephb2 receptor tyrosine kinase {Mouse (Mus musculu	99.96
d2java1	269	Serine/threonine-protein kinase Nek2 {Human (Homo	99.96
d1qpca_	272	Lymphocyte kinase (lck) {Human (Homo sapiens) [Tax	99.96
d2jfla1	288	STE20-like serine/threonine-protein kinase, SLK {H	99.96
d1mqba_	283	epha2 receptor tyrosine kinase {Human (Homo sapien	99.96
d1o6la_	337	Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9	99.96
d1opja_	287	Abelsone tyrosine kinase (abl) {Mouse (Mus musculu	99.96
d1u5ra_	309	Serine/threonine protein kinase TAO2 {Rat (Rattus	99.96
d1t4ha_	270	Protein kinase wnk1 {Human (Homo sapiens) [TaxId:	99.95
d1rdqe_	350	cAMP-dependent PK, catalytic subunit {Mouse (Mus m	99.95
d1sm2a_	263	Tyrosine-protein kinase Itk/Tsk {Human (Homo sapie	99.95
d1s9ja_	322	Dual specificity mitogen-activated protein kinase	99.95
d1u59a_	285	Tyrosine-protein kinase ZAP-70 {Human (Homo sapien	99.95
d1lufa_	301	Musk tyrosine kinase {Rat (Rattus norvegicus) [Tax	99.95
d1rjba_	325	Fl cytokine receptor {Human (Homo sapiens) [TaxId:	99.95
d1xbba_	277	Tyrosine-protein kinase SYK {Human (Homo sapiens)	99.95
d1koba_	352	Twitchin, kinase domain {California sea hare (Aply	99.95
d1a06a_	307	Calmodulin-dependent protein kinase {Rat (Rattus n	99.95
d1xkka_	317	EGF receptor tyrosine kinase, Erbb-1 {Human (Homo	99.95
d1koaa2	350	Twitchin, kinase domain {Caenorhabditis elegans, p	99.95
d1o6ya_	277	Mycobacterial protein kinase PknB, catalytic domai	99.94
d1k2pa_	258	Bruton's tyrosine kinase (Btk) {Human (Homo sapien	99.94
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.94
d1omwa3	364	G-protein coupled receptor kinase 2 {Cow (Bos taur	99.94
d1ywna1	299	Vascular endothelial growth factor receptor 2 (kdr	99.94
d1u46a_	273	Activated CDC42 kinase 1, ACK1 {Human (Homo sapien	99.94
d1fmka3	285	c-src tyrosine kinase {Human (Homo sapiens) [TaxId	99.94
d1mp8a_	273	Focal adhesion kinase 1 (fak) {Human (Homo sapiens	99.94
d1jksa_	293	Death-associated protein kinase, Dap {Human (Homo	99.94
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.94
d1xjda_	320	Protein kinase C, theta type {Human (Homo sapiens)	99.94
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.94
d1r0pa_	311	Hepatocyte growth factor receptor, c-MET {Human (H	99.94
d1ua2a_	299	Cell division protein kinase 7, CDK7 {Human (Homo	99.93
d1p4oa_	308	Insulin-like growth factor 1 receptor {Human (Homo	99.93
d1gz8a_	298	Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [T	99.93
d1phka_	277	gamma-subunit of glycogen phosphorylase kinase (Ph	99.93
d1byga_	262	Carboxyl-terminal src kinase (csk) {Human (Homo sa	99.93
d1blxa_	305	Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [T	99.93
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.93
d1xwsa_	273	Proto-oncogene serine/threonine-protein kinase Pim	99.93
d2ozaa1	335	MAP kinase activated protein kinase 2, mapkap2 {Hu	99.93
d1fgka_	299	Fibroblast growth factor receptor 1 {Human (Homo s	99.93
d1tkia_	321	Titin, kinase domain {Human (Homo sapiens) [TaxId:	99.93
d1pmea_	345	MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606	99.93
d3blha1	318	Cell division protein kinase 9, CDK9 {Human (Homo	99.92
d1t46a_	311	c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]	99.92
d1ckia_	299	Casein kinase-1, CK1 {Rat (Rattus norvegicus) [Tax	99.92
d1csna_	293	Casein kinase-1, CK1 {Fission yeast (Schizosacchar	99.92
d1ob3a_	286	Cyclin-dependent PK, CDK2 {(Plasmodium falciparum)	99.92
d1fvra_	309	Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}	99.92
d1cm8a_	346	MAP kinase p38-gamma {Human (Homo sapiens) [TaxId:	99.92
d1vjya_	303	Type I TGF-beta receptor R4 {Human (Homo sapiens)	99.91
d1q5ka_	350	Glycogen synthase kinase-3 beta (Gsk3b) {Human (Ho	99.91
d1unla_	292	Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [T	99.91
d1vzoa_	322	Ribosomal protein S6 kinase alpha 5, Msk1 {Human (	99.91
d3bqca1	328	Protein kinase CK2, alpha subunit {Rattus norvegic	99.9
d2b1pa1	355	c-jun N-terminal kinase (jnk3s) {Human (Homo sapie	99.9
d2gfsa1	348	MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]	99.89
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.89
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.89
d1q8ya_	362	Sky1p {Baker's yeast (Saccharomyces cerevisiae) [T	99.85
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.84
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.84
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.8
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.79
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.79
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.77
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.77
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.76
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.75
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.74
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.73
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.71
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.71
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.71
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.56
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.54
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.51
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.5
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.5
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.49
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.48
d1zara2	191	Rio2 serine protein kinase C-terminal domain {Arch	99.48
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.47
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.32
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.3
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.27
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.25
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.52
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.45
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.76
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.58
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.09
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.84
d2ppqa1	316	Homoserine kinase ThrB {Agrobacterium tumefaciens	92.73
d1zyla1	325	RdoA {Escherichia coli [TaxId: 562]}	88.55
d1nd4a_	255	Aminoglycoside 3'-phosphotransferase IIa (Kanamyci	81.64

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=100.00  E-value=1.2e-45  Score=395.17  Aligned_cols=297  Identities=31%  Similarity=0.484  Sum_probs=259.5

Q ss_pred             chHHHHHHHHHHHHhccCCCccccccccCCCCCCcc--ceeeeeCCCC--CcEEEEEcCCCCCcc--ccCcccCCCCCCc
Q 045449            6 IISQHQQALLALKAHISYDHTNLFARNWTSSTSVCI--WIGITCDVNS--HRVIGLNISSFNLQG--TITPQLGNLSSLQ   79 (823)
Q Consensus         6 ~~~~~~~aLl~~k~~~~~~~~~~~~~~W~~~~~~c~--w~gv~c~~~~--~~v~~L~L~~~~l~g--~~~~~l~~l~~L~   79 (823)
                      |+++||+|||+||+++.+ | ..++ +|..++|||.  |.||+|+..+  +||++|||+++++.|  .+|+++++|++|+
T Consensus         3 c~~~e~~aLl~~k~~~~~-~-~~l~-sW~~~~d~C~~~w~gv~C~~~~~~~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~   79 (313)
T d1ogqa_           3 CNPQDKQALLQIKKDLGN-P-TTLS-SWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLN   79 (313)
T ss_dssp             SCHHHHHHHHHHHHHTTC-C-GGGT-TCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCS
T ss_pred             CCHHHHHHHHHHHHHCCC-C-CcCC-CCCCCCCCCCCcCCCeEEeCCCCcEEEEEEECCCCCCCCCCCCChHHhcCcccc
Confidence            899999999999999864 4 3566 9999999994  9999998754  489999999999998  5889999999999


Q ss_pred             EEEccC-CCCCCCCCCCCCCCCCCCEEECCCCcCcCCCchhhhcCCCCcEEecccccccCccCccccCCCCCCccccccc
Q 045449           80 TLDLSH-NKLSGNIPSSIFNMHTLKLLDFSDNQLFGSLSSFIFNMSSMTTIDLSINRLSGELPANICKIPSTLSKCKQLE  158 (823)
Q Consensus        80 ~L~Ls~-N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~p~~~~~l~~L~  158 (823)
                      +|||++ |+++|.+|.+|+++++|++|||++|+|.+..+..+..+.+|+++++++|++.+.+|..+       .++++|+
T Consensus        80 ~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l-------~~l~~L~  152 (313)
T d1ogqa_          80 FLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI-------SSLPNLV  152 (313)
T ss_dssp             EEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGG-------GGCTTCC
T ss_pred             ccccccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhh-------ccCcccc
Confidence            999996 89999999999999999999999999999999999999999999999999998887776       8899999


Q ss_pred             eeeeccceeeccCccccccchhhHHHHHhhcCCCcccCCcccCCcchhhhhccccccccCCccccccCCCCCcEEEccCC
Q 045449          159 ELNLGFNNLSGAIPKEIGNLTKLKEIISTITNSTVCEIPREIGNLPYLARLALATNNLVGVVPVTIFNMSALKEISLLNN  238 (823)
Q Consensus       159 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~~l~~n~~~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N  238 (823)
                      ++++++|.++|.+|..+..+.++........|.+.+..|..+.++..+ .++++.+.+.+.+|..+..+++++.+++++|
T Consensus       153 ~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~-~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~  231 (313)
T d1ogqa_         153 GITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLA-FVDLSRNMLEGDASVLFGSDKNTQKIHLAKN  231 (313)
T ss_dssp             EEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCS-EEECCSSEEEECCGGGCCTTSCCSEEECCSS
T ss_pred             eeeccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccccccccccc
Confidence            999999999999999998888764333367788888888888877655 6888888888888888888899999999999


Q ss_pred             cccccCCcccccCCCCccEEEeeccccccccCccccCCCCCCeEEeecccccccCCCccCCCcccCcccccCcc-ccCC
Q 045449          239 SLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSITNSSKLSDLELGENLFSGFIPNTIGNLRNLEFGNIADNY-LTSS  316 (823)
Q Consensus       239 ~l~g~lp~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~-l~~~  316 (823)
                      .+++.+|. +. .+++|++|+|++|+|+|.+|..|+++++|++|+|++|+|+|.+|. ++++++|+.+++++|+ +.|.
T Consensus       232 ~l~~~~~~-~~-~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l~~N~~l~g~  307 (313)
T d1ogqa_         232 SLAFDLGK-VG-LSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLCGS  307 (313)
T ss_dssp             EECCBGGG-CC-CCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-STTGGGSCGGGTCSSSEEEST
T ss_pred             cccccccc-cc-cccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC-cccCCCCCHHHhCCCccccCC
Confidence            98876653 43 378899999999999988999999999999999999999988874 6788889989888887 4553

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=100.00  E-value=8.7e-33  Score=294.76  Aligned_cols=255  Identities=27%  Similarity=0.461  Sum_probs=194.3

Q ss_pred             CccEEEeecccccc--ccCccccCCCCCCeEEeec-ccccccCCCccCCCcccCcccccCccccCCCCcccccccccCCC
Q 045449          254 NVETLNLGINSFSG--TIPSSITNSSKLSDLELGE-NLFSGFIPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCK  330 (823)
Q Consensus       254 ~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~l~  330 (823)
                      .++.|||++|.++|  .+|..++++++|++|+|++ |+++|.+|..|+++++|++|+|+                     
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls---------------------  109 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYIT---------------------  109 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEE---------------------
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhc---------------------
Confidence            57777777777776  4667777777777777775 67777766666555555555554                     


Q ss_pred             CceEEEeecCCCCccCCccccccccccceEEecCCcceeccCccccCcccccEEEcccCcCCCCchhcccccCCC-CEEE
Q 045449          331 KLKVLIVTGNPLDGILPKSIGNFSLSLETILMANCSISGNIPQVVGNLSNLLVLELGGNNLTGPIPVTFSQLQTL-QAFD  409 (823)
Q Consensus       331 ~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L-~~L~  409 (823)
                              +|++.+..|..+..+ ..|+++++++|.+.+.+|..+.+++.|+++++++|.++|.+|..+..+..+ +.++
T Consensus       110 --------~N~l~~~~~~~~~~~-~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~  180 (313)
T d1ogqa_         110 --------HTNVSGAIPDFLSQI-KTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMT  180 (313)
T ss_dssp             --------EECCEEECCGGGGGC-TTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEE
T ss_pred             --------cccccccccccccch-hhhcccccccccccccCchhhccCcccceeeccccccccccccccccccccccccc
Confidence                    455555555555555 567777777777777777777777888888888888887788777777665 7788


Q ss_pred             ccCCCCCCcchHhhhcCCCCCEEEcccCcCcccccccccCCCCCCeEeccCCccccccchhhhccCCCcEEecccccccc
Q 045449          410 LTRNKLAGPITDELCHLARLHSLVLQGNKFSGSIPSCLGNLTSVRVLYLGLNIFTSVLSSTIWNLKDILFIDVSSNFLDG  489 (823)
Q Consensus       410 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g  489 (823)
                      +++|+++|..|..+..+..+ .+++++|.+.|.+|..+..+++++.+++++|.+++.+| .++.+++|+.|||++|+++|
T Consensus       181 ~~~n~l~~~~~~~~~~l~~~-~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g  258 (313)
T d1ogqa_         181 ISRNRLTGKIPPTFANLNLA-FVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYG  258 (313)
T ss_dssp             CCSSEEEEECCGGGGGCCCS-EEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEE
T ss_pred             cccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccc-ccccccccccccCccCeecc
Confidence            88888888888777776544 68888888888888888888888888888888888655 57788888999999999998


Q ss_pred             ccCccccCCCCCcEEEcccCCCCCCCCCcccCccCCCCCCCCCCCcccccCCcccCCCCC
Q 045449          490 PLSLDIGNLKVVIGLDFSRNNLSGDIPITIGEGEIPRGGPFANLTAKSFMGNELLCGLPD  549 (823)
Q Consensus       490 ~~p~~~~~l~~L~~L~ls~N~l~g~ip~~~~~g~ip~~~~~~~~~~~~~~~n~~~c~~~~  549 (823)
                      .+|..+++++.|++|||++|+|+|.|         |..+.+..+...++.||+.+||.|.
T Consensus       259 ~iP~~l~~L~~L~~L~Ls~N~l~g~i---------P~~~~L~~L~~l~l~~N~~l~g~pl  309 (313)
T d1ogqa_         259 TLPQGLTQLKFLHSLNVSFNNLCGEI---------PQGGNLQRFDVSAYANNKCLCGSPL  309 (313)
T ss_dssp             CCCGGGGGCTTCCEEECCSSEEEEEC---------CCSTTGGGSCGGGTCSSSEEESTTS
T ss_pred             cCChHHhCCCCCCEEECcCCcccccC---------CCcccCCCCCHHHhCCCccccCCCC
Confidence            89988999999999999999998544         4445677888888999999999875

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.97  E-value=1.6e-29  Score=277.04  Aligned_cols=123  Identities=26%  Similarity=0.417  Sum_probs=56.1

Q ss_pred             CcccccEEEcccCcCCCCchhcccccCCCCEEEccCCCCCCcchHhhhcCCCCCEEEcccCcCcccccccccCCCCCCeE
Q 045449          377 NLSNLLVLELGGNNLTGPIPVTFSQLQTLQAFDLTRNKLAGPITDELCHLARLHSLVLQGNKFSGSIPSCLGNLTSVRVL  456 (823)
Q Consensus       377 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L  456 (823)
                      .+++|++|++++|++++..+  +..+..++.+++++|++++.  ..+..+++++.|++++|++++..|  +..+++|++|
T Consensus       261 ~~~~L~~L~l~~~~l~~~~~--~~~~~~l~~l~~~~n~l~~~--~~~~~~~~l~~L~ls~n~l~~l~~--l~~l~~L~~L  334 (384)
T d2omza2         261 GLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDI--SPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRL  334 (384)
T ss_dssp             TCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCC--GGGGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEE
T ss_pred             ccccCCEeeccCcccCCCCc--cccccccccccccccccccc--cccchhcccCeEECCCCCCCCCcc--cccCCCCCEE
Confidence            33444444444444443221  33444444444444444432  123444444455555554443321  4444455555


Q ss_pred             eccCCccccccchhhhccCCCcEEeccccccccccCccccCCCCCcEEEcccC
Q 045449          457 YLGLNIFTSVLSSTIWNLKDILFIDVSSNFLDGPLSLDIGNLKVVIGLDFSRN  509 (823)
Q Consensus       457 ~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~ls~N  509 (823)
                      ++++|++++. + .+.++++|++||+++|++++..|  +.+++.|+.|+|++|
T Consensus       335 ~L~~n~l~~l-~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         335 FFANNKVSDV-S-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             ECCSSCCCCC-G-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             ECCCCCCCCC-h-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence            5555554442 1 34455555555555555554433  445555555555554

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2.4e-32  Score=283.09  Aligned_cols=152  Identities=26%  Similarity=0.371  Sum_probs=128.0

Q ss_pred             ccCCccceeeccC------------CeEEEEEEehHhh-HHHHHHHHHHHHHHhhcchhhHHH-----------------
Q 045449          628 DRFSENNLIGIGN------------GMEVAVKVFHQQY-ERALKSFEDECEVRKRIRHRNLVK-----------------  677 (823)
Q Consensus       628 ~~f~~~~~lg~g~------------~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~-----------------  677 (823)
                      ++|+..+.||+|+            |+.||||++.... ....+.|.+|++++++++|||||+                 
T Consensus         5 ~dy~~~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~~~~~~~~~~~~~ivmEy   84 (271)
T d1nvra_           5 EDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLFLEY   84 (271)
T ss_dssp             TEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC-------CHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred             cceEEEEEEecCcCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHhCCCCCEeeEeeeeccCceeEEEEec
Confidence            5688888999886            6779999986543 334567999999999999999999                 


Q ss_pred             -----------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccc
Q 045449          678 -----------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQ  734 (823)
Q Consensus       678 -----------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~  734 (823)
                                             ++.|++.+|+|+|+.+|+||||||+|||++.++.+||+|||+|+.............
T Consensus        85 ~~gg~L~~~l~~~~~l~e~~~~~i~~qi~~al~ylH~~~IiHrDiKp~NILl~~~~~~KL~DFG~a~~~~~~~~~~~~~~  164 (271)
T d1nvra_          85 CSGGELFDRIEPDIGMPEPDAQRFFHQLMAGVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNK  164 (271)
T ss_dssp             CTTEEGGGGSBTTTBCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECTTCCEEECCCTTCEECEETTEECCBCC
T ss_pred             cCCCcHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHcCCccCcccHHHEEECCCCCEEEccchhheeeccCCccccccc
Confidence                                   578999999999999999999999999999999999999999998754443334456


Q ss_pred             cccCCCcCcccccCCCcc-ccccceehhhhhhccccCCCCCcCCCc
Q 045449          735 TLATIGYMAPEYGTKGRV-STRGDVCSFGIISGGKETRSMTVGETC  779 (823)
Q Consensus       735 ~~gt~~y~aPE~~~~~~~-~~~~Dv~S~Gvv~~~~~~~~~~~~~~~  779 (823)
                      .+||+.|||||++.+..+ +.++||||+||++|+|++|..||....
T Consensus       165 ~~GT~~Y~APE~~~~~~~~~~~~DiwSlGvilyeml~G~~pf~~~~  210 (271)
T d1nvra_         165 MCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPS  210 (271)
T ss_dssp             CCSCGGGSCTHHHHCSSBCHHHHHHHHHHHHHHHHHHSSCSCSSSS
T ss_pred             eeeCcCccCHhHhcCCCCCCCceeeeHhHHHHHHHHhCCCCCCCCC
Confidence            789999999999988776 678999999999999999999996643

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.96  E-value=7.9e-29  Score=271.49  Aligned_cols=340  Identities=23%  Similarity=0.301  Sum_probs=210.1

Q ss_pred             cEEEEEcCCCCCccccCcccCCCCCCcEEEccCCCCCCCCCCCCCCCCCCCEEECCCCcCcCCCchhhhcCCCCcEEecc
Q 045449           53 RVIGLNISSFNLQGTITPQLGNLSSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQLFGSLSSFIFNMSSMTTIDLS  132 (823)
Q Consensus        53 ~v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls  132 (823)
                      .+++|++++++++. + +.+..|++|++|||++|+|++..  .|+++++|++|+|++|.|.+..+  ++++++|+.|+++
T Consensus        45 ~l~~L~l~~~~I~~-l-~gl~~L~nL~~L~Ls~N~l~~l~--~l~~L~~L~~L~L~~n~i~~i~~--l~~l~~L~~L~~~  118 (384)
T d2omza2          45 QVTTLQADRLGIKS-I-DGVEYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLF  118 (384)
T ss_dssp             TCCEEECCSSCCCC-C-TTGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECC
T ss_pred             CCCEEECCCCCCCC-c-cccccCCCCCEEeCcCCcCCCCc--cccCCcccccccccccccccccc--ccccccccccccc
Confidence            57888888888774 3 35777888888888888888543  38888888888888888876543  7788888888888


Q ss_pred             cccccCccCccccCCCCCCccccccceeeeccceeeccCccccccchhhHHHHHhhcCCCcccCCcccCCcchhhhhccc
Q 045449          133 INRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEIGNLTKLKEIISTITNSTVCEIPREIGNLPYLARLALA  212 (823)
Q Consensus       133 ~N~l~~~~p~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~~l~~n~~~~~ip~~l~~l~~L~~L~Ls  212 (823)
                      +|.+++..+.         .....+..+....|.+....+..........                         .... 
T Consensus       119 ~~~~~~~~~~---------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-------------------------~~~~-  163 (384)
T d2omza2         119 NNQITDIDPL---------KNLTNLNRLELSSNTISDISALSGLTSLQQL-------------------------SFGN-  163 (384)
T ss_dssp             SSCCCCCGGG---------TTCTTCSEEEEEEEEECCCGGGTTCTTCSEE-------------------------EEEE-
T ss_pred             cccccccccc---------ccccccccccccccccccccccccccccccc-------------------------cccc-
Confidence            8887754332         3345667777777776533222111111000                         0000 


Q ss_pred             cccccCCccccccCCCCCcEEEccCCcccccCCcccccCCCCccEEEeeccccccccCccccCCCCCCeEEeeccccccc
Q 045449          213 TNNLVGVVPVTIFNMSALKEISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSITNSSKLSDLELGENLFSGF  292 (823)
Q Consensus       213 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~lp~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~  292 (823)
                          .......+...+.........|...  ...... .+++++.+++++|.+++..|  +...++|+.|++++|+++..
T Consensus       164 ----~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~~  234 (384)
T d2omza2         164 ----QVTDLKPLANLTTLERLDISSNKVS--DISVLA-KLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI  234 (384)
T ss_dssp             ----SCCCCGGGTTCTTCCEEECCSSCCC--CCGGGG-GCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC
T ss_pred             ----ccchhhhhccccccccccccccccc--cccccc-cccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCCc
Confidence                0001112222333333333333332  111111 24555555555555554433  23445555666666655532


Q ss_pred             CCCccCCCcccCcccccCccccCCCCcccccccccCCCCceEEEeecCCCCccCCccccccccccceEEecCCcceeccC
Q 045449          293 IPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGILPKSIGNFSLSLETILMANCSISGNIP  372 (823)
Q Consensus       293 ~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~p  372 (823)
                        +.+..+++|+.|++++|.+++.       ..+..+++|+.|++++|.+++..+  +..+ ..++.+.++.|.+++.  
T Consensus       235 --~~l~~l~~L~~L~l~~n~l~~~-------~~~~~~~~L~~L~l~~~~l~~~~~--~~~~-~~l~~l~~~~n~l~~~--  300 (384)
T d2omza2         235 --GTLASLTNLTDLDLANNQISNL-------APLSGLTKLTELKLGANQISNISP--LAGL-TALTNLELNENQLEDI--  300 (384)
T ss_dssp             --GGGGGCTTCSEEECCSSCCCCC-------GGGTTCTTCSEEECCSSCCCCCGG--GTTC-TTCSEEECCSSCCSCC--
T ss_pred             --chhhcccccchhccccCccCCC-------CcccccccCCEeeccCcccCCCCc--cccc-cccccccccccccccc--
Confidence              2455555666666666665553       125556666666666666664422  3344 4667777777777652  


Q ss_pred             ccccCcccccEEEcccCcCCCCchhcccccCCCCEEEccCCCCCCcchHhhhcCCCCCEEEcccCcCcccccccccCCCC
Q 045449          373 QVVGNLSNLLVLELGGNNLTGPIPVTFSQLQTLQAFDLTRNKLAGPITDELCHLARLHSLVLQGNKFSGSIPSCLGNLTS  452 (823)
Q Consensus       373 ~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~  452 (823)
                      ..+..+++++.|++++|++++..+  +..+++|++|++++|+|++ ++ .+.++++|++|++++|++++..|  +.++++
T Consensus       301 ~~~~~~~~l~~L~ls~n~l~~l~~--l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~  374 (384)
T d2omza2         301 SPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP--LANLTR  374 (384)
T ss_dssp             GGGGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTT
T ss_pred             cccchhcccCeEECCCCCCCCCcc--cccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh--hccCCC
Confidence            346777888888888888886543  7778888888888888885 33 57888888888888888887655  788888


Q ss_pred             CCeEeccCCc
Q 045449          453 VRVLYLGLNI  462 (823)
Q Consensus       453 L~~L~Ls~N~  462 (823)
                      |+.|+|++|.
T Consensus       375 L~~L~L~~Na  384 (384)
T d2omza2         375 ITQLGLNDQA  384 (384)
T ss_dssp             CSEEECCCEE
T ss_pred             CCEeeCCCCc
Confidence            8888888873

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=6.7e-32  Score=280.95  Aligned_cols=152  Identities=30%  Similarity=0.415  Sum_probs=123.0

Q ss_pred             ccCCccceeeccC---------CeEEEEEEehHh--hHHHHHHHHHHHHHHhhcchhhHHH-------------------
Q 045449          628 DRFSENNLIGIGN---------GMEVAVKVFHQQ--YERALKSFEDECEVRKRIRHRNLVK-------------------  677 (823)
Q Consensus       628 ~~f~~~~~lg~g~---------~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~-------------------  677 (823)
                      ++|...+.||+|+         +..||||+++..  .....+.|.+|++++++++|||||+                   
T Consensus         8 ~~~~~~~~lG~G~fg~Vy~~~~~~~vAvK~~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~~~~~~~~~~~~lv~Ey~~~   87 (276)
T d1uwha_           8 GQITVGQRIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTAPQLAIVTQWCEG   87 (276)
T ss_dssp             TCCCCCSEEEECSSCEEEEEESSSEEEEEECCCSSCCTTHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSCEEEEECCCE
T ss_pred             ccEEEEEEEeeCCCcEEEEEEECCEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCEeeeeEEEeccEEEEEEecCCC
Confidence            5677788999986         335999998643  2445678999999999999999998                   


Q ss_pred             ---------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccc
Q 045449          678 ---------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTL  736 (823)
Q Consensus       678 ---------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~  736 (823)
                                           ++.|++.+|+|+|+++||||||||+|||++.++.+||+|||+|+...............
T Consensus        88 g~L~~~l~~~~~~~~~~~~~~i~~qi~~gl~yLH~~~ivHrDlKp~NiLl~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~  167 (276)
T d1uwha_          88 SSLYHHLHIIETKFEMIKLIDIARQTAQGMDYLHAKSIIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLS  167 (276)
T ss_dssp             EEHHHHHHTSCCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEETTSSEEECCCCCSCC------------CC
T ss_pred             CCHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHhcCCEeccccCHHHEEEcCCCCEEEccccceeeccccCCcccccccc
Confidence                                 46789999999999999999999999999999999999999998765444333445668


Q ss_pred             cCCCcCcccccCC---CccccccceehhhhhhccccCCCCCcCCCc
Q 045449          737 ATIGYMAPEYGTK---GRVSTRGDVCSFGIISGGKETRSMTVGETC  779 (823)
Q Consensus       737 gt~~y~aPE~~~~---~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~~  779 (823)
                      ||+.|||||++.+   ..|+.++|||||||++||+++|+.||.+..
T Consensus       168 gt~~y~APE~l~~~~~~~~~~~sDiwS~Gv~l~el~tg~~Pf~~~~  213 (276)
T d1uwha_         168 GSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQLPYSNIN  213 (276)
T ss_dssp             CCGGGCCHHHHTTCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCC
T ss_pred             cCcccCCHHHHhcccCCCCCchhhhhhhHHHHHHHHHCCCCCCCCC
Confidence            9999999999864   358999999999999999999999997653

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=8e-32  Score=281.76  Aligned_cols=151  Identities=30%  Similarity=0.435  Sum_probs=127.4

Q ss_pred             ccCCccceeeccC------------CeEEEEEEehHhh---HHHHHHHHHHHHHHhhcchhhHHH---------------
Q 045449          628 DRFSENNLIGIGN------------GMEVAVKVFHQQY---ERALKSFEDECEVRKRIRHRNLVK---------------  677 (823)
Q Consensus       628 ~~f~~~~~lg~g~------------~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~---------------  677 (823)
                      ++|+..+.||+|+            |+.||||++....   ....+.+.+|++++++++|||||+               
T Consensus         8 ~dy~i~~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~ivm   87 (288)
T d1uu3a_           8 EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGL   87 (288)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCSTTBCCEEEEEECSSEEEEEE
T ss_pred             CCCEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEehHHccCHHHHHHHHHHHHHHHHcCCCCeeEEEEEEEECCEEEEEE
Confidence            5688889999986            6679999997543   233467999999999999999999               


Q ss_pred             -------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccc
Q 045449          678 -------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQ  732 (823)
Q Consensus       678 -------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~  732 (823)
                                               +++|++.+|+|+|+.+|+||||||+|||+++++.+||+|||+|+.+.........
T Consensus        88 Ey~~gg~L~~~~~~~~~l~e~~~~~~~~qi~~al~ylH~~~iiHrDiKp~NIll~~~~~vkl~DFG~a~~~~~~~~~~~~  167 (288)
T d1uu3a_          88 SYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARA  167 (288)
T ss_dssp             CCCTTEEHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTSCEEECCCTTCEECC--------
T ss_pred             EccCCCCHHHhhhccCCCCHHHHHHHHHHHHHHHHhhccccEEcCcCCccccccCCCceEEecccccceecccCCccccc
Confidence                                     4679999999999999999999999999999999999999999987654433344


Q ss_pred             cccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCC
Q 045449          733 TQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       733 ~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      ...+||+.|||||++.+..|+.++||||+||++|+|++|..||.+.
T Consensus       168 ~~~~GT~~Y~APE~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~  213 (288)
T d1uu3a_         168 NSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAG  213 (288)
T ss_dssp             --CCCCGGGCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             ccccCCccccCceeeccCCCCcccceehhhHHHHHHhhCCCCCCCc
Confidence            5568999999999999999999999999999999999999999764

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.3e-31  Score=280.69  Aligned_cols=149  Identities=27%  Similarity=0.384  Sum_probs=131.2

Q ss_pred             ccCCccceeeccC------------CeEEEEEEehHhhHHHHHHHHHHHHHHhhcchhhHHH------------------
Q 045449          628 DRFSENNLIGIGN------------GMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVK------------------  677 (823)
Q Consensus       628 ~~f~~~~~lg~g~------------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~------------------  677 (823)
                      ++|...+.||+|+            |+.||||++........+.+.+|++++++++|||||+                  
T Consensus        20 ~~Y~~~~~iG~G~fg~Vy~a~~~~~~~~vAvK~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~ivmEy~   99 (293)
T d1yhwa1          20 KKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEYL   99 (293)
T ss_dssp             TTBCSCEECCCSSSCEEEEEEBTTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECC
T ss_pred             cccEEEEEEecCcCcEEEEEEECCCCCEEEEEEEecccChHHHHHHHHHHHHHhCCCCCEeeEeEEEEECCEEEEEEEec
Confidence            4688888899986            6779999997655445578999999999999999998                  


Q ss_pred             ---------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccc
Q 045449          678 ---------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTL  736 (823)
Q Consensus       678 ---------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~  736 (823)
                                           ++.|++.+|+|+|++||+||||||+|||++.++.+||+|||+|+.......  .....+
T Consensus       100 ~gg~L~~~~~~~~l~~~~~~~i~~qi~~aL~yLH~~~iiHrDiKp~NILl~~~~~vkl~DFG~a~~~~~~~~--~~~~~~  177 (293)
T d1yhwa1         100 AGGSLTDVVTETCMDEGQIAAVCRECLQALEFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQS--KRSTMV  177 (293)
T ss_dssp             TTCBHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTCCEEECCCTTCEECCSTTC--CBCCCC
T ss_pred             CCCcHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHCCCcccCCcHHHeEECCCCcEeeccchhheeeccccc--cccccc
Confidence                                 468999999999999999999999999999999999999999998654332  234568


Q ss_pred             cCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCC
Q 045449          737 ATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       737 gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      ||+.|+|||++.+..|+.++||||+||++|+|++|..||.+.
T Consensus       178 gt~~Y~aPE~~~~~~~~~~~DiwSlGvilyemltG~~Pf~~~  219 (293)
T d1yhwa1         178 GTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNE  219 (293)
T ss_dssp             SCGGGCCHHHHSSSCBCTHHHHHHHHHHHHHHHHSSCTTTTS
T ss_pred             cCCCccChhhhcCCCCCchhceehHhHHHHHHhhCCCCCCCC
Confidence            999999999999999999999999999999999999999764

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.5e-31  Score=276.04  Aligned_cols=147  Identities=24%  Similarity=0.368  Sum_probs=128.9

Q ss_pred             ccCCccceeeccC------------CeEEEEEEehHhh---HHHHHHHHHHHHHHhhcchhhHHH---------------
Q 045449          628 DRFSENNLIGIGN------------GMEVAVKVFHQQY---ERALKSFEDECEVRKRIRHRNLVK---------------  677 (823)
Q Consensus       628 ~~f~~~~~lg~g~------------~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~---------------  677 (823)
                      ++|...+.||+|+            ++.||||++....   ....+.+.+|++++++++|||||+               
T Consensus         6 ~dy~i~~~iG~G~fg~Vy~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~ivm   85 (263)
T d2j4za1           6 EDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDATRVYLIL   85 (263)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             hHeEEEEEEecCCCcEEEEEEECCCCcEEEEEEEchHHccChHHHHHHHHHHHHHHhcCCCCCCeEEEEEEECCEEEEEE
Confidence            5688888999986            6679999997543   223467899999999999999999               


Q ss_pred             -------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccc
Q 045449          678 -------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQ  732 (823)
Q Consensus       678 -------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~  732 (823)
                                               ++.|++++|+|+|+.+|+||||||+|||++.++.+||+|||+|+......    .
T Consensus        86 Ey~~~g~L~~~l~~~~~l~e~~~~~i~~qi~~al~~lH~~~ivHrDiKp~Nill~~~~~~kl~DFG~a~~~~~~~----~  161 (263)
T d2j4za1          86 EYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSR----R  161 (263)
T ss_dssp             ECCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTSCEEECCCCSCSCCCCCC----C
T ss_pred             eecCCCcHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHCCeeeeeeccccceecCCCCEeecccceeeecCCCc----c
Confidence                                     47899999999999999999999999999999999999999998764332    2


Q ss_pred             cccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCC
Q 045449          733 TQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       733 ~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      ...+||+.|||||++.+..|+.++||||+||++|+|++|+.||.+.
T Consensus       162 ~~~~Gt~~Y~APE~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~  207 (263)
T d2j4za1         162 TTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEAN  207 (263)
T ss_dssp             EETTEEGGGCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCTTCCS
T ss_pred             cccCCCCcccCHHHHcCCCCCchhhhhhHhHHHHHHhcCCCCCCCC
Confidence            3467999999999999999999999999999999999999999764

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=7.9e-31  Score=278.17  Aligned_cols=146  Identities=27%  Similarity=0.330  Sum_probs=128.5

Q ss_pred             ccCCccceeeccC------------CeEEEEEEehHhh---HHHHHHHHHHHHHHhhcchhhHHH---------------
Q 045449          628 DRFSENNLIGIGN------------GMEVAVKVFHQQY---ERALKSFEDECEVRKRIRHRNLVK---------------  677 (823)
Q Consensus       628 ~~f~~~~~lg~g~------------~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~---------------  677 (823)
                      ++|+..+.||+|+            |+.||||+++...   ....+.+.+|+.++++++|||||+               
T Consensus         4 ~dy~i~~~lG~G~fg~Vy~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~ivm   83 (316)
T d1fota_           4 QDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQDAQQIFMIM   83 (316)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCBTTBCCEEEEEECSSEEEEEE
T ss_pred             hHeEEEEEEecCcCcEEEEEEECCCCCEEEEEEEchHHccCHHHHHHHHHHHHHHHhccCcChhheeeeEeeCCeeeeEe
Confidence            5678888899886            6779999997543   223568999999999999999998               


Q ss_pred             -------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccc
Q 045449          678 -------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQ  732 (823)
Q Consensus       678 -------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~  732 (823)
                                               ++.|++.+|+|+|+++|+||||||+|||++.++.+||+|||+|+.....     .
T Consensus        84 E~~~gg~l~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~iiHrDiKp~NILl~~~g~vkL~DFG~a~~~~~~-----~  158 (316)
T d1fota_          84 DYIEGGELFSLLRKSQRFPNPVAKFYAAEVCLALEYLHSKDIIYRDLKPENILLDKNGHIKITDFGFAKYVPDV-----T  158 (316)
T ss_dssp             CCCCSCBHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHHTTTEECCCCCGGGEEECTTSCEEECCCSSCEECSSC-----B
T ss_pred             eecCCccccccccccccccccHHHHHHHHHHHhhhhhccCcEEccccCchheeEcCCCCEEEecCccceEeccc-----c
Confidence                                     4679999999999999999999999999999999999999999986432     2


Q ss_pred             cccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCC
Q 045449          733 TQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       733 ~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      ...+||+.|||||++.+..|+.++||||+||++|+|++|..||.+.
T Consensus       159 ~~~~Gt~~Y~APE~l~~~~y~~~~DiwSlGvilyemltG~~Pf~~~  204 (316)
T d1fota_         159 YTLCGTPDYIAPEVVSTKPYNKSIDWWSFGILIYEMLAGYTPFYDS  204 (316)
T ss_dssp             CCCCSCTTTCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCS
T ss_pred             ccccCcccccCHHHHcCCCCCchhhccccchhHHHHHhCCCCCCCc
Confidence            3468999999999999999999999999999999999999999764

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=3.5e-31  Score=278.99  Aligned_cols=164  Identities=21%  Similarity=0.384  Sum_probs=124.7

Q ss_pred             cccCHHHHHHHhccCCc---------cceeeccC---------------CeEEEEEEehHh-hHHHHHHHHHHHHHHhhc
Q 045449          616 RRFSYHELLRATDRFSE---------NNLIGIGN---------------GMEVAVKVFHQQ-YERALKSFEDECEVRKRI  670 (823)
Q Consensus       616 ~~~~~~~l~~at~~f~~---------~~~lg~g~---------------~~~vavK~~~~~-~~~~~~~~~~E~~~l~~l  670 (823)
                      ..++|++..+|+.+|..         .+.||+|+               ...||||++... .....++|.+|+++++++
T Consensus         5 d~~t~~d~~~a~~~f~~~i~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l   84 (299)
T d1jpaa_           5 DPFTFEDPNEAVREFAKEIDISCVKIEQVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQF   84 (299)
T ss_dssp             CGGGSSSHHHHHHHHSCBCCGGGEEEEEEEEECSSSEEEEEEECC---CCEEEEEEECCSSCCHHHHHHHHHHHHHHTTC
T ss_pred             CCCCHHHHHHHHhhhchhhChhhcEEeeEEeeCCCeEEEEEEEeCCCCEEEEEEEEEECcccCHHHHHHHHHHHHHHHhC
Confidence            45788888888876653         46899987               124899988643 345567899999999999


Q ss_pred             chhhHHH-----------------------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCC
Q 045449          671 RHRNLVK-----------------------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDED  709 (823)
Q Consensus       671 ~h~niv~-----------------------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~  709 (823)
                      +|||||+                                         ++.|++++|+|+|+++|+||||||+|||++.+
T Consensus        85 ~HpnIv~l~g~~~~~~~~~iv~Ey~~~g~L~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~iiHrDlKp~NILl~~~  164 (299)
T d1jpaa_          85 DHPNVIHLEGVVTKSTPVMIITEFMENGSLDSFLRQNDGQFTVIQLVGMLRGIAAGMKYLADMNYVHRDLAARNILVNSN  164 (299)
T ss_dssp             CCTTBCCEEEEECSSSSCEEEEECCTTEEHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTT
T ss_pred             CCCCCccEEEEEeeCCEEEEEEEecCCCcceeeeccccCCCCHHHHHHHHHHHHHHHHHHhhCCCccCccccceEEECCC
Confidence            9999998                                         46789999999999999999999999999999


Q ss_pred             CcEEEeecccccccCCCCccc---cccccccCCCcCcccccCCCccccccceehhhhhhccccC-CCCCcCCCc
Q 045449          710 MVAHISDFGIAKLLSGEDQLS---KQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKET-RSMTVGETC  779 (823)
Q Consensus       710 ~~~kl~DfGla~~~~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~-~~~~~~~~~  779 (823)
                      +.+||+|||+|+.........   ......||+.|||||++.++.|+.++|||||||++||+++ |+.||.+..
T Consensus       165 ~~~Kl~DFGla~~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~sDvwS~Gvvl~el~t~g~~Pf~~~~  238 (299)
T d1jpaa_         165 LVCKVSDFGLSRFLEDDTSDPTYTSALGGKIPIRWTAPEAIQYRKFTSASDVWSYGIVMWEVMSYGERPYWDMT  238 (299)
T ss_dssp             CCEEECCC-----------------------CGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCC
T ss_pred             CcEEECCcccceEccCCCCcceeeecccccCCccccCHHHHhcCCCCcccccccchHHHHHHHhCCCCCCCCCC
Confidence            999999999999765433211   1223467999999999999999999999999999999997 889987653

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=3.9e-31  Score=274.06  Aligned_cols=150  Identities=23%  Similarity=0.332  Sum_probs=119.2

Q ss_pred             ccCCccceeeccC------------CeEEEEEEehHhh--HHHHHHHHHHHHHHhhcchhhHHH----------------
Q 045449          628 DRFSENNLIGIGN------------GMEVAVKVFHQQY--ERALKSFEDECEVRKRIRHRNLVK----------------  677 (823)
Q Consensus       628 ~~f~~~~~lg~g~------------~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~----------------  677 (823)
                      ++|+..+.||+|+            |+.||||++....  +...+.|.+|++++++++|||||+                
T Consensus         4 edy~~~~~iG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~~~iv   83 (269)
T d2java1           4 EDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRTNTTLYIV   83 (269)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECCTTSCHHHHHHHHHHHHHTTSCCCTTBCCEEEEEEC----CEEEE
T ss_pred             hhCEEeEEEecCCCeEEEEEEECCCCCEEEEEEEChhhCCHHHHHHHHHHHHHHHHCCCCCEeeEEEEEEeCCCCEEEEE
Confidence            6788889999986            6779999986442  445678999999999999999998                


Q ss_pred             ------------------------------HHHHHHHHhhhcCCCC-----EEeccCCCCCEEeCCCCcEEEeecccccc
Q 045449          678 ------------------------------IISSSLEYLHFGHSIP-----IIHCDLKPSNVLLDEDMVAHISDFGIAKL  722 (823)
Q Consensus       678 ------------------------------~~~~~l~~L~~~h~~~-----ivHrdlk~~NiLl~~~~~~kl~DfGla~~  722 (823)
                                                    ++.|++.+|+|+|+.+     |+||||||+|||++.++.+||+|||+|+.
T Consensus        84 mEy~~~g~L~~~i~~~~~~~~~l~e~~~~~i~~qi~~al~ylH~~~~~~~~IiHrDiKp~NIll~~~~~vkl~DFG~a~~  163 (269)
T d2java1          84 MEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLARI  163 (269)
T ss_dssp             EECCTTEEHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHCC---------CCGGGEEECTTSCEEECCHHHHHH
T ss_pred             EecCCCCcHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCEEeCcCchhhcCcCCCCcEEEeeccceee
Confidence                                          3578888999999765     99999999999999999999999999998


Q ss_pred             cCCCCccccccccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCCc
Q 045449          723 LSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGETC  779 (823)
Q Consensus       723 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~~  779 (823)
                      ......  .....+||+.|||||++.+..|+.++|||||||++|+|++|..||.+..
T Consensus       164 ~~~~~~--~~~~~~gt~~Y~APE~l~~~~~~~~~DIwSlGvilyel~tg~~Pf~~~~  218 (269)
T d2java1         164 LNHDTS--FAKAFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALMPPFTAFS  218 (269)
T ss_dssp             C-------------CCCSCCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSS
T ss_pred             cccCCC--ccccCCCCcccCCHHHHcCCCCChHHHHHhhCHHHHHHhhCCCCCCCCC
Confidence            754322  2345689999999999999999999999999999999999999997643

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=7e-31  Score=273.06  Aligned_cols=148  Identities=26%  Similarity=0.404  Sum_probs=125.4

Q ss_pred             ccCCccceeeccC-----------CeEEEEEEehHhhHHHHHHHHHHHHHHhhcchhhHHH-------------------
Q 045449          628 DRFSENNLIGIGN-----------GMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVK-------------------  677 (823)
Q Consensus       628 ~~f~~~~~lg~g~-----------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~-------------------  677 (823)
                      ++|...+.||+|+           +..||||+++... ...++|.+|++++++++|||||+                   
T Consensus        13 ~~~~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~~~~~~-~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~iv~Ey~~~   91 (272)
T d1qpca_          13 ETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQGS-MSPDAFLAEANLMKQLQHQRLVRLYAVVTQEPIYIITEYMEN   91 (272)
T ss_dssp             GGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTS-SCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSCEEEEECCTT
T ss_pred             HHeEEeEEEecCCCcEEEEEEECCCCEEEEEEEccCc-CCHHHHHHHHHHHHhCCCCCEeEEEeeeccCCeEEEEEeCCC
Confidence            4677778888886           5679999997543 23467999999999999999999                   


Q ss_pred             ----------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCcccccccc
Q 045449          678 ----------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQT  735 (823)
Q Consensus       678 ----------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~  735 (823)
                                            ++.|++++|+|+|+++|+||||||+|||+++++.+||+|||+|+....... ......
T Consensus        92 g~L~~~~~~~~~~~l~~~~~~~i~~qi~~gl~~lH~~~ivHrDiKp~NIll~~~~~~Kl~DFGla~~~~~~~~-~~~~~~  170 (272)
T d1qpca_          92 GSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEY-TAREGA  170 (272)
T ss_dssp             CBHHHHTTSHHHHTCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTSCEEECCCTTCEECSSSCE-ECCTTC
T ss_pred             CcHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcccCccchhheeeecccceeeccccceEEccCCcc-cccccc
Confidence                                  467889999999999999999999999999999999999999998754332 233456


Q ss_pred             ccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCC
Q 045449          736 LATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGE  777 (823)
Q Consensus       736 ~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~  777 (823)
                      .||+.|||||++.++.|+.++|||||||++||++++..|+..
T Consensus       171 ~gt~~y~APE~~~~~~~~~~sDvwS~Gvvl~ellt~~~~~~~  212 (272)
T d1qpca_         171 KFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYP  212 (272)
T ss_dssp             CCCTTTSCHHHHHHCEECHHHHHHHHHHHHHHHHTTTCCSST
T ss_pred             CCcccccChHHHhCCCCCchhhhhhhHHHHHHHHhCCCCCCC
Confidence            799999999999988999999999999999999997665543

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=3.1e-31  Score=277.50  Aligned_cols=149  Identities=26%  Similarity=0.322  Sum_probs=127.2

Q ss_pred             ccCCccceeeccC------------CeEEEEEEehHhhHHHHHHHHHHHHHHhhcchhhHHH------------------
Q 045449          628 DRFSENNLIGIGN------------GMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVK------------------  677 (823)
Q Consensus       628 ~~f~~~~~lg~g~------------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~------------------  677 (823)
                      +.|+..+.||+|+            +..||||++........+.|.+|++++++++|||||+                  
T Consensus        12 d~Y~i~~~iG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lvmEy~   91 (288)
T d2jfla1          12 DFWEIIGELGDGAFGKVYKAQNKETSVLAAAKVIDTKSEEELEDYMVEIDILASCDHPNIVKLLDAFYYENNLWILIEFC   91 (288)
T ss_dssp             GTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECSSSGGGGGTHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECC
T ss_pred             cCeEEeEEEeeCCCcEEEEEEECCCCeEEEEEEECcCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCeEEEEEecC
Confidence            4577778899886            6679999997655555678999999999999999999                  


Q ss_pred             -----------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccc
Q 045449          678 -----------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQ  734 (823)
Q Consensus       678 -----------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~  734 (823)
                                             ++.|++.+|+|+|+++|+||||||+|||++.++.+||+|||+|+......  .....
T Consensus        92 ~~g~L~~~~~~~~~~l~e~~~~~i~~qi~~gL~ylH~~~ivHrDiKp~NIll~~~~~~Kl~DFG~a~~~~~~~--~~~~~  169 (288)
T d2jfla1          92 AGGAVDAVMLELERPLTESQIQVVCKQTLDALNYLHDNKIIHRDLKAGNILFTLDGDIKLADFGVSAKNTRTI--QRRDS  169 (288)
T ss_dssp             TTEEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEECHHHH--HHHTC
T ss_pred             CCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEeecChhheeECCCCCEEEEechhhhccCCCc--ccccc
Confidence                                   46899999999999999999999999999999999999999998653221  12345


Q ss_pred             cccCCCcCcccccC-----CCccccccceehhhhhhccccCCCCCcCCC
Q 045449          735 TLATIGYMAPEYGT-----KGRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       735 ~~gt~~y~aPE~~~-----~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      .+||+.|+|||++.     ...|+.++||||+||++|+|++|..||.+.
T Consensus       170 ~~Gt~~y~APE~l~~~~~~~~~y~~k~DiwSlGvilyemltg~~Pf~~~  218 (288)
T d2jfla1         170 FIGTPYWMAPEVVMCETSKDRPYDYKADVWSLGITLIEMAEIEPPHHEL  218 (288)
T ss_dssp             CCSCCTTCCHHHHTTCSTTTSSTTTHHHHHHHHHHHHHHHHSSCTTTTS
T ss_pred             cccccccCCHHHHhhcccCCCCCChhhhHHHHHHHHHHHhhCCCCCCCC
Confidence            68999999999874     456899999999999999999999999764

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=8.6e-31  Score=274.18  Aligned_cols=150  Identities=23%  Similarity=0.413  Sum_probs=117.3

Q ss_pred             ccCCccceeeccC-C---------------eEEEEEEehHhh-HHHHHHHHHHHHHHhhcchhhHHH-------------
Q 045449          628 DRFSENNLIGIGN-G---------------MEVAVKVFHQQY-ERALKSFEDECEVRKRIRHRNLVK-------------  677 (823)
Q Consensus       628 ~~f~~~~~lg~g~-~---------------~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~-------------  677 (823)
                      +.|...++||+|+ |               ..||||++.... ....++|.+|++++++++|||||+             
T Consensus         7 ~~~~~~~~iG~G~fG~Vy~~~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~~~g~~~~~~~~~~   86 (283)
T d1mqba_           7 SCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNIIRLEGVISKYKPMMI   86 (283)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEE
T ss_pred             HHeEeeeEEeeCCCeEEEEEEEeCCCCEEEEEEEEEEECcccChHHHHHHHHHHHHHHhcCCCCEeeeeEEEecCCceEE
Confidence            4577788899986 1               358999986543 444568999999999999999998             


Q ss_pred             ----------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCcc
Q 045449          678 ----------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQL  729 (823)
Q Consensus       678 ----------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~  729 (823)
                                                  ++.|++.+|+|+|+.+|+||||||+|||++.++.+||+|||+|+........
T Consensus        87 v~e~~~~~~l~~~~~~~~~~~~~~~~~~i~~~i~~gl~~lH~~~iiHrDlKp~NILl~~~~~~Kl~DFGla~~~~~~~~~  166 (283)
T d1mqba_          87 ITEYMENGALDKFLREKDGEFSVLQLVGMLRGIAAGMKYLANMNYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEA  166 (283)
T ss_dssp             EEECCTTEEHHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTCCEEECCCCC----------
T ss_pred             EEEecccCcchhhhhcccccccHHHHHHHHHHHHHhhhhccccccccCccccceEEECCCCeEEEcccchhhcccCCCcc
Confidence                                        3578899999999999999999999999999999999999999976543322


Q ss_pred             -ccccccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCC
Q 045449          730 -SKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGE  777 (823)
Q Consensus       730 -~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~  777 (823)
                       .......||+.|||||++.++.|+.++|||||||++||+.++..|+..
T Consensus       167 ~~~~~~~~gt~~Y~APE~l~~~~~~~~sDI~S~Gvil~el~t~~~~~~~  215 (283)
T d1mqba_         167 TYTTSGGKIPIRWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGERPYW  215 (283)
T ss_dssp             -------CCCGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTT
T ss_pred             ceEeccCCCCccccCHHHHccCCCCCcccccccHHHHHHHHhCCCCccc
Confidence             122345689999999999999999999999999999999997666543

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.3e-30  Score=278.49  Aligned_cols=149  Identities=22%  Similarity=0.280  Sum_probs=130.7

Q ss_pred             ccCCccceeeccC------------CeEEEEEEehHhh---HHHHHHHHHHHHHHhhcchhhHHH---------------
Q 045449          628 DRFSENNLIGIGN------------GMEVAVKVFHQQY---ERALKSFEDECEVRKRIRHRNLVK---------------  677 (823)
Q Consensus       628 ~~f~~~~~lg~g~------------~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~---------------  677 (823)
                      ++|...+.||+|+            |+.||||++++..   ....+.+.+|+.++++++|||||+               
T Consensus         5 ~dy~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~~~~iv~   84 (337)
T d1o6la_           5 NDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCFVM   84 (337)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             HhcEEEEEEecCcCeEEEEEEECCCCCEEEEEEEchhhccCHHHHHHHHHHHHHHHhCCCCCEEEEEeeeccccccccce
Confidence            5788889999996            6779999997653   223467899999999999999998               


Q ss_pred             -------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccc
Q 045449          678 -------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQ  732 (823)
Q Consensus       678 -------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~  732 (823)
                                               +++|++.+|+|+|+++|+||||||+|||++.++.+||+|||+|+.......  ..
T Consensus        85 ey~~gg~L~~~~~~~~~~~e~~~~~~~~qil~al~ylH~~~iiHRDlKP~NILl~~~g~vkl~DFG~a~~~~~~~~--~~  162 (337)
T d1o6la_          85 EYANGGELFFHLSRERVFTEERARFYGAEIVSALEYLHSRDVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGA--TM  162 (337)
T ss_dssp             ECCTTCBHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTSCEEECCCTTCBCSCCTTC--CB
T ss_pred             eccCCCchhhhhhcccCCcHHHHHHHHHHHhhhhhhhhhcCccccccCHHHeEecCCCCEEEeecccccccccCCc--cc
Confidence                                     478999999999999999999999999999999999999999997643322  23


Q ss_pred             cccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCC
Q 045449          733 TQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       733 ~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      ...+||+.|+|||++.+..|+.++||||+||++|+|++|..||.+.
T Consensus       163 ~~~~GT~~Y~aPE~~~~~~y~~~~DiwSlGvilyeml~G~~pf~~~  208 (337)
T d1o6la_         163 KTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQ  208 (337)
T ss_dssp             CCCEECGGGCCGGGGSSSCBCTTHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             ccceeCHHHhhhhhccCCCCChhhcccchhhHHHHHHHCCCCCCCc
Confidence            4578999999999999999999999999999999999999999765

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=4.8e-31  Score=276.22  Aligned_cols=148  Identities=26%  Similarity=0.421  Sum_probs=125.6

Q ss_pred             ccCCccceeeccC------------CeEEEEEEehHhhHHHHHHHHHHHHHHhhcchhhHHH------------------
Q 045449          628 DRFSENNLIGIGN------------GMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVK------------------  677 (823)
Q Consensus       628 ~~f~~~~~lg~g~------------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~------------------  677 (823)
                      ++|...+.||+|+            ++.||||+++.... ..++|.+|++++++++|||||+                  
T Consensus        17 ~~~~~~~~iG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~-~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~iv~E~~   95 (287)
T d1opja_          17 TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTM-EVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFM   95 (287)
T ss_dssp             GGEEEEEETTTTTTSSEEEEEEGGGTEEEEEEECCTTCS-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEECC
T ss_pred             HHeEEeeEEeeCCCeEEEEEEECCCCeEEEEEEECCccc-hHHHHHHHHHHHHhCCCCCEecCCccEeeCCeeEEEeecc
Confidence            4677778888886            67799999975532 3467999999999999999998                  


Q ss_pred             ------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCcccccc
Q 045449          678 ------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQT  733 (823)
Q Consensus       678 ------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~  733 (823)
                                              ++.|++.+|+|+|+++|+||||||+|||++.++.+||+|||+|+....... ....
T Consensus        96 ~~g~l~~~l~~~~~~~~~~~~~~~i~~qi~~gL~yLH~~~iiHrDlKp~NILl~~~~~~Kl~DFG~a~~~~~~~~-~~~~  174 (287)
T d1opja_          96 TYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTY-TAHA  174 (287)
T ss_dssp             TTCBHHHHHHHSCTTTSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGGCEEECCCCCTTTCCSSSS-EEET
T ss_pred             cCcchHHHhhhccccchHHHHHHHHHHHHHHHHHHHHHCCcccCccccCeEEECCCCcEEEccccceeecCCCCc-eeec
Confidence                                    356899999999999999999999999999999999999999997654332 2334


Q ss_pred             ccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCC
Q 045449          734 QTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGE  777 (823)
Q Consensus       734 ~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~  777 (823)
                      ...||+.|+|||++.++.|+.++|||||||++||++++..|+..
T Consensus       175 ~~~g~~~y~aPE~~~~~~~~~k~DiwS~Gv~l~ell~~~~p~~~  218 (287)
T d1opja_         175 GAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYP  218 (287)
T ss_dssp             TEEECGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCSST
T ss_pred             cccccccccChHHHcCCCCCchhhhhhHHHHHHHHHhCCCCCCC
Confidence            45689999999999999999999999999999999997766543

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.96  E-value=9.7e-31  Score=276.33  Aligned_cols=145  Identities=28%  Similarity=0.375  Sum_probs=125.7

Q ss_pred             ccCCccceeeccC------------CeEEEEEEehHh---hHHHHHHHHHHHHHHhhcchhhHHH---------------
Q 045449          628 DRFSENNLIGIGN------------GMEVAVKVFHQQ---YERALKSFEDECEVRKRIRHRNLVK---------------  677 (823)
Q Consensus       628 ~~f~~~~~lg~g~------------~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~---------------  677 (823)
                      +.|+..+.||+|+            ++.||||++...   .....+.|.+|++++++++|||||+               
T Consensus        15 ~~y~~l~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~iv~   94 (309)
T d1u5ra_          15 KLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLVM   94 (309)
T ss_dssp             HHEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEECCSSCHHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEE
T ss_pred             HhcEeeEEEecCCCeEEEEEEECCCCcEEEEEEEchhhccCHHHHHHHHHHHHHHHHCCCCCEeeEEEEEEECCEEEEEE
Confidence            4577788899986            677999998643   2445578999999999999999999               


Q ss_pred             -------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccc
Q 045449          678 -------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQ  732 (823)
Q Consensus       678 -------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~  732 (823)
                                               ++.|++.+|+|+|+.+|+||||||+|||++.++.+||+|||+|+....      .
T Consensus        95 E~~~~g~l~~~~~~~~~l~e~~~~~i~~qi~~aL~yLH~~~iiHrDiKp~NILl~~~~~~Kl~DFG~a~~~~~------~  168 (309)
T d1u5ra_          95 EYCLGSASDLLEVHKKPLQEVEIAAVTHGALQGLAYLHSHNMIHRDVKAGNILLSEPGLVKLGDFGSASIMAP------A  168 (309)
T ss_dssp             ECCSEEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCSGGGEEEETTTEEEECCCTTCBSSSS------B
T ss_pred             EecCCCchHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCEeccCCCcceEEECCCCCEEEeecccccccCC------C
Confidence                                     478999999999999999999999999999999999999999987542      2


Q ss_pred             cccccCCCcCcccccCC---CccccccceehhhhhhccccCCCCCcCCC
Q 045449          733 TQTLATIGYMAPEYGTK---GRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       733 ~~~~gt~~y~aPE~~~~---~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      ...+||+.|||||++.+   +.|+.++|||||||++|++++|..||.+.
T Consensus       169 ~~~~GT~~Y~APE~~~~~~~~~y~~~~DiwSlGvilyel~~g~~Pf~~~  217 (309)
T d1u5ra_         169 NSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNM  217 (309)
T ss_dssp             CCCCSCGGGCCHHHHTTTTSCCBCTHHHHHHHHHHHHHHHHSSCTTTTS
T ss_pred             CccccCccccCHHHHhccCCCCcCchhhhhhHHHHHHHHHHCCCCCCCC
Confidence            34579999999999854   46899999999999999999999999764

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=5.5e-30  Score=265.30  Aligned_cols=143  Identities=28%  Similarity=0.370  Sum_probs=120.9

Q ss_pred             CccceeeccC------------CeEEEEEEehHhh--HHHHHHHHHHHHHHhhcchhhHHH-------------------
Q 045449          631 SENNLIGIGN------------GMEVAVKVFHQQY--ERALKSFEDECEVRKRIRHRNLVK-------------------  677 (823)
Q Consensus       631 ~~~~~lg~g~------------~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~-------------------  677 (823)
                      ...+.||+|+            +..||||++....  ....+.|.+|++++++++|||||+                   
T Consensus        12 ~~~~~iG~G~fg~Vy~~~~~~~~~~va~K~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~~~~~ivm   91 (270)
T d1t4ha_          12 KFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVLVT   91 (270)
T ss_dssp             EEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEESSSCEEEEEEE
T ss_pred             EeeeEEecCcCcEEEEEEECCCCeEEEEEEEchhhCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEeeccccCCEEEEEE
Confidence            3445788886            5679999986543  445678999999999999999998                   


Q ss_pred             -------------------------HHHHHHHHhhhcCCCC--EEeccCCCCCEEeC-CCCcEEEeecccccccCCCCcc
Q 045449          678 -------------------------IISSSLEYLHFGHSIP--IIHCDLKPSNVLLD-EDMVAHISDFGIAKLLSGEDQL  729 (823)
Q Consensus       678 -------------------------~~~~~l~~L~~~h~~~--ivHrdlk~~NiLl~-~~~~~kl~DfGla~~~~~~~~~  729 (823)
                                               ++.|++.+|+|+|+++  |+||||||+|||++ .++.+||+|||+|+.....   
T Consensus        92 E~~~~g~L~~~l~~~~~~~~~~~~~~~~qi~~gl~yLH~~~~~IiHrDiKp~NILl~~~~~~~Kl~DFGla~~~~~~---  168 (270)
T d1t4ha_          92 ELMTSGTLKTYLKRFKVMKIKVLRSWCRQILKGLQFLHTRTPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKRAS---  168 (270)
T ss_dssp             ECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHTSSSCCCCSCCCGGGEEESSTTSCEEECCTTGGGGCCTT---
T ss_pred             eCCCCCcHHHHHhccccccHHHHHHHHHHHHHHHHHHHHCCCCEEeCCcChhhceeeCCCCCEEEeecCcceeccCC---
Confidence                                     3679999999999988  99999999999997 5789999999999864332   


Q ss_pred             ccccccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCC
Q 045449          730 SKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       730 ~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                       .....+||+.|||||++.+ .|+.++||||+||++|+|++|+.||.+.
T Consensus       169 -~~~~~~GT~~Y~aPE~~~~-~~~~~~DIwSlGvilyel~~g~~Pf~~~  215 (270)
T d1t4ha_         169 -FAKAVIGTPEFMAPEMYEE-KYDESVDVYAFGMCMLEMATSEYPYSEC  215 (270)
T ss_dssp             -SBEESCSSCCCCCGGGGGT-CCCTHHHHHHHHHHHHHHHHSSCTTTTC
T ss_pred             -ccCCcccCccccCHHHhCC-CCCCcCchhhHHHHHHHHHHCCCCCCCc
Confidence             2235689999999998865 6999999999999999999999999764

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.95  E-value=2.4e-30  Score=278.29  Aligned_cols=146  Identities=23%  Similarity=0.313  Sum_probs=128.9

Q ss_pred             ccCCccceeeccC------------CeEEEEEEehHhhH---HHHHHHHHHHHHHhhcchhhHHH---------------
Q 045449          628 DRFSENNLIGIGN------------GMEVAVKVFHQQYE---RALKSFEDECEVRKRIRHRNLVK---------------  677 (823)
Q Consensus       628 ~~f~~~~~lg~g~------------~~~vavK~~~~~~~---~~~~~~~~E~~~l~~l~h~niv~---------------  677 (823)
                      ++|...+.||+|+            |+.||||++.....   ...+.+.+|++++++++|||||+               
T Consensus        41 d~y~i~~~lG~G~fg~Vy~a~~~~~g~~~AvK~i~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~~v~  120 (350)
T d1rdqe_          41 DQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVM  120 (350)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             cCeEEEEEeecCcCcEEEEEEECCCCCEEEEEEEchHHccCHHHHHHHHHHHHHHHHcCCCcEeeccccccccccccccc
Confidence            5788888999986            67799999975432   23467899999999999999998               


Q ss_pred             -------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccc
Q 045449          678 -------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQ  732 (823)
Q Consensus       678 -------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~  732 (823)
                                               ++.|++.+|+|+|+.+||||||||+|||++.++.+||+|||+|+.....     .
T Consensus       121 e~~~~g~l~~~l~~~~~l~e~~~~~i~~qi~~aL~yLH~~~iiHRDIKP~NILl~~~g~ikL~DFG~a~~~~~~-----~  195 (350)
T d1rdqe_         121 EYVAGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGR-----T  195 (350)
T ss_dssp             ECCTTCBHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEECSSC-----B
T ss_pred             ccccccchhhhHhhcCCCCHHHHHHHHHHHHHHHHHHHhCCEecCcCCHHHcccCCCCCEEeeeceeeeecccc-----c
Confidence                                     4789999999999999999999999999999999999999999986532     2


Q ss_pred             cccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCC
Q 045449          733 TQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       733 ~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      ....||+.|||||++.+..|+.++||||+||++|+|++|..||.+.
T Consensus       196 ~~~~Gt~~Y~APE~~~~~~~~~~~DiwSlGvilyemltG~~Pf~~~  241 (350)
T d1rdqe_         196 WTLCGTPEALAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFAD  241 (350)
T ss_dssp             CCCEECGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             ccccCccccCCHHHHcCCCCCccccccchhHHHHHHHhCCCCCCCc
Confidence            3467999999999999999999999999999999999999999764

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.5e-30  Score=269.16  Aligned_cols=147  Identities=25%  Similarity=0.352  Sum_probs=113.0

Q ss_pred             ccCCccceeeccC-----------CeEEEEEEehHhhHHHHHHHHHHHHHHhhcchhhHHH-------------------
Q 045449          628 DRFSENNLIGIGN-----------GMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVK-------------------  677 (823)
Q Consensus       628 ~~f~~~~~lg~g~-----------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~-------------------  677 (823)
                      ++|...+.||+|+           +..||||+++... ...++|.+|++++++++|||||+                   
T Consensus         5 ~~~~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~i~~~~-~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~~lv~E~~~   83 (263)
T d1sm2a_           5 SELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGA-MSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVFEFME   83 (263)
T ss_dssp             SCEEEEEEEECCSSCCEEEEEETTTEEEEEEECCSSS-SCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEECCT
T ss_pred             HHcEEEEEEeeCCCeEEEEEEECCCCEEEEEEECCCc-CcHHHHHHHHHHHHhcCCCCcccccceeccCCceEEEEEecC
Confidence            3566677888885           5679999997543 23367999999999999999999                   


Q ss_pred             ----------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCcccccccc
Q 045449          678 ----------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQT  735 (823)
Q Consensus       678 ----------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~  735 (823)
                                            ++.|++++|+|+|+.+|+||||||+|||++.++.+||+|||+|+....... ......
T Consensus        84 ~g~L~~~l~~~~~~~~~~~~~~i~~qia~gl~~lH~~~iiHrDlKp~Nill~~~~~~Kl~DFGla~~~~~~~~-~~~~~~  162 (263)
T d1sm2a_          84 HGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLEEACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQY-TSSTGT  162 (263)
T ss_dssp             TCBHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHTTCCCTTCSGGGEEECGGGCEEECSCC-----------------
T ss_pred             CCcHHHHhhccccCCCHHHHHHHHHHHHHHHHhhhccceeecccchhheeecCCCCeEecccchheeccCCCc-eeecce
Confidence                                  367889999999999999999999999999999999999999987654332 223346


Q ss_pred             ccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcC
Q 045449          736 LATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVG  776 (823)
Q Consensus       736 ~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~  776 (823)
                      .||+.|+|||++.+..|+.++|||||||++||++++..|+.
T Consensus       163 ~gt~~y~aPE~l~~~~~~~k~DVwS~Gvil~el~t~~~~~~  203 (263)
T d1sm2a_         163 KFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPY  203 (263)
T ss_dssp             --CTTSCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTT
T ss_pred             ecCcccCChHHhcCCCCCchhhhcchHHHHHHHHHCCCCCC
Confidence            79999999999999999999999999999999999654443

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.4e-30  Score=277.62  Aligned_cols=148  Identities=23%  Similarity=0.332  Sum_probs=126.8

Q ss_pred             hccCCccceeeccC------------CeEEEEEEehHhh-HHHHHHHHHHHHHHhhcchhhHHH----------------
Q 045449          627 TDRFSENNLIGIGN------------GMEVAVKVFHQQY-ERALKSFEDECEVRKRIRHRNLVK----------------  677 (823)
Q Consensus       627 t~~f~~~~~lg~g~------------~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~----------------  677 (823)
                      .++|+..+.||+|+            |+.||||+++... ....+++.+|++++++++|||||+                
T Consensus         5 ~d~y~~~~~iG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~iVmE   84 (322)
T d1s9ja_           5 DDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICME   84 (322)
T ss_dssp             GGGEEEEEEEECCSSCCEEEEEETTTTEEEEEEEEECCCCTTHHHHHHHHGGGGGGCCCTTBCCEEEEEECSSEEEEEEE
T ss_pred             ccCCEEEEEEecCCCeEEEEEEECCCCcEEEEEEEChhhCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEE
Confidence            46788889999986            6779999986432 334578999999999999999999                


Q ss_pred             ------------------------HHHHHHHHhhhcCC-CCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccc
Q 045449          678 ------------------------IISSSLEYLHFGHS-IPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQ  732 (823)
Q Consensus       678 ------------------------~~~~~l~~L~~~h~-~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~  732 (823)
                                              ++.|++.+|+|+|+ .+|+||||||+|||++.++.+||+|||+|+.....    ..
T Consensus        85 y~~gg~L~~~l~~~~~l~~~~~~~~~~qil~aL~yLH~~~~IiHRDiKP~NILl~~~~~vkl~DFGla~~~~~~----~~  160 (322)
T d1s9ja_          85 HMDGGSLDQVLKKAGRIPEQILGKVSIAVIKGLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDS----MA  160 (322)
T ss_dssp             CCTTEEHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHCCCCSCCSGGGEEECTTCCEEECCCCCCHHHHHH----TC
T ss_pred             cCCCCcHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHhCCEEccccCHHHeeECCCCCEEEeeCCCccccCCC----cc
Confidence                                    46789999999997 59999999999999999999999999999976422    23


Q ss_pred             cccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCC
Q 045449          733 TQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       733 ~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      ...+||+.|||||++.+..|+.++||||+||++|||++|+.||...
T Consensus       161 ~~~~GT~~Y~APEvl~~~~y~~~~DiWSlGvil~ell~G~~Pf~~~  206 (322)
T d1s9ja_         161 NSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIPPP  206 (322)
T ss_dssp             ---CCSSCCCCHHHHHCSCCCTTHHHHHHHHHHHHHHHSSCCSSCC
T ss_pred             ccccCCccccCchHHcCCCCCcHHHHHHHHHHHHHHHHCCCCCCCC
Confidence            4568999999999999999999999999999999999999999653

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=4.5e-30  Score=268.17  Aligned_cols=139  Identities=23%  Similarity=0.339  Sum_probs=119.3

Q ss_pred             CeEEEEEEehHhh-HHHHHHHHHHHHHHhhcchhhHHH----------------------------------------HH
Q 045449          641 GMEVAVKVFHQQY-ERALKSFEDECEVRKRIRHRNLVK----------------------------------------II  679 (823)
Q Consensus       641 ~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~----------------------------------------~~  679 (823)
                      +..||||+++... ....++|.+|++++++++|||||+                                        ++
T Consensus        36 ~~~vAvK~l~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~g~~~~~~~~lvmE~~~~g~L~~~l~~~~~~l~~~~~~~i~  115 (285)
T d1u59a_          36 QIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQAEALMLVMEMAGGGPLHKFLVGKREEIPVSNVAELL  115 (285)
T ss_dssp             CEEEEEEEECSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEESSSEEEEEECCTTEEHHHHHTTCTTTSCHHHHHHHH
T ss_pred             cEEEEEEEEChhcCHHHHHHHHHHHHHHHhCCCCCEeeEeeeeccCeEEEEEEeCCCCcHHHHhhccccCCCHHHHHHHH
Confidence            3469999996543 445678999999999999999998                                        46


Q ss_pred             HHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCcc-ccccccccCCCcCcccccCCCccccccce
Q 045449          680 SSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQL-SKQTQTLATIGYMAPEYGTKGRVSTRGDV  758 (823)
Q Consensus       680 ~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv  758 (823)
                      .|++++|+|+|+++|+||||||+|||++.++.+||+|||+|+.+...... .......||+.|+|||++..+.++.++||
T Consensus       116 ~qi~~gL~ylH~~~iiHrDlKp~Nill~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~ksDV  195 (285)
T d1u59a_         116 HQVSMGMKYLEEKNFVHRDLAARNVLLVNRHYAKISDFGLSKALGADDSYYTARSAGKWPLKWYAPECINFRKFSSRSDV  195 (285)
T ss_dssp             HHHHHHHHHHHHTTEECCCCSGGGEEEEETTEEEECCCTTCEECTTCSCEECCCCSSCCCGGGCCHHHHHHCEECHHHHH
T ss_pred             HHHHHHHHHHHhCCeecCcCchhheeeccCCceeeccchhhhcccccccccccccccccCccccChHHHhCCCCCccchh
Confidence            78999999999999999999999999999999999999999987554332 22334568999999999998999999999


Q ss_pred             ehhhhhhccccC-CCCCcCCCc
Q 045449          759 CSFGIISGGKET-RSMTVGETC  779 (823)
Q Consensus       759 ~S~Gvv~~~~~~-~~~~~~~~~  779 (823)
                      |||||++||+++ |..||.+..
T Consensus       196 wS~Gv~l~E~lt~G~~Pf~~~~  217 (285)
T d1u59a_         196 WSYGVTMWEALSYGQKPYKKMK  217 (285)
T ss_dssp             HHHHHHHHHHHTTSCCTTTTCC
T ss_pred             hcchHHHHHHHhCCCCCCCCCC
Confidence            999999999987 899997753

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.95  E-value=2e-30  Score=273.96  Aligned_cols=194  Identities=20%  Similarity=0.211  Sum_probs=142.9

Q ss_pred             HhccCCccceeeccC-----------------CeEEEEEEehHhh-HHHHHHHHHHHHHHhhcchhhHHH----------
Q 045449          626 ATDRFSENNLIGIGN-----------------GMEVAVKVFHQQY-ERALKSFEDECEVRKRIRHRNLVK----------  677 (823)
Q Consensus       626 at~~f~~~~~lg~g~-----------------~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~----------  677 (823)
                      ..++|+..+.||+|+                 ++.||||+++... ....++|.+|++++++++||||++          
T Consensus        11 p~~~~~~~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~E~~il~~l~h~niv~~~~~~~~~~~   90 (301)
T d1lufa_          11 PRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDNPNIVKLLGVCAVGKP   90 (301)
T ss_dssp             CGGGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSS
T ss_pred             CHHHcEEeEEEeeCCCeEEEEEEECCCccCCCCeEEEEEEEChhcChHHHHHHHHHHHHHHhcCCCCcccceeeeccCCc
Confidence            456788889999986                 2469999997543 445678999999999999999998          


Q ss_pred             ------------------------------------------------------HHHHHHHHhhhcCCCCEEeccCCCCC
Q 045449          678 ------------------------------------------------------IISSSLEYLHFGHSIPIIHCDLKPSN  703 (823)
Q Consensus       678 ------------------------------------------------------~~~~~l~~L~~~h~~~ivHrdlk~~N  703 (823)
                                                                            ++.|++.+|+|+|+.+||||||||+|
T Consensus        91 ~~~v~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~gl~ylH~~~ivHrDlKp~N  170 (301)
T d1lufa_          91 MCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSERKFVHRDLATRN  170 (301)
T ss_dssp             CEEEEECCTTCBHHHHHHHTCC----------------------CCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGG
T ss_pred             eEEEEEecCCCcHHHHHHhcCccccccccccccchhhhccccCCCCCCHHHHHHHHHHHHHHhhhcccCCeEeeEEcccc
Confidence                                                                  25688899999999999999999999


Q ss_pred             EEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccCCCccccccceehhhhhhccccCCCC-CcCCCcccc
Q 045449          704 VLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSM-TVGETCTPV  782 (823)
Q Consensus       704 iLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~-~~~~~~~~~  782 (823)
                      ||+|.++.+||+|||+|+...............||+.|+|||++.+..|+.++|||||||++||++++.. ||.+.....
T Consensus       171 ILld~~~~~Kl~DFGls~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~t~ksDVwS~Gvvl~ell~~~~~p~~~~~~~e  250 (301)
T d1lufa_         171 CLVGENMVVKIADFGLSRNIYSADYYKADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGLQPYYGMAHEE  250 (301)
T ss_dssp             EEECGGGCEEECCCSCHHHHTGGGCBC----CCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHHH
T ss_pred             eEECCCCcEEEccchhheeccCCccccccCCCCcCcCcCCHHHHccCCCChhhhhccchhhHHHHHccCCCCCCCCCHHH
Confidence            9999999999999999987755444334445678999999999999999999999999999999999864 565543221


Q ss_pred             cccccccCCcccccccCCCcccccccccccccccccCC
Q 045449          783 RESKYEVHPATTTIMEHPLPRVGEVMDVDRGKARIQGK  820 (823)
Q Consensus       783 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  820 (823)
                      ...... .......+....+.+.+++..+....+-+||
T Consensus       251 ~~~~v~-~~~~~~~p~~~~~~~~~li~~cl~~~P~~RP  287 (301)
T d1lufa_         251 VIYYVR-DGNILACPENCPLELYNLMRLCWSKLPADRP  287 (301)
T ss_dssp             HHHHHH-TTCCCCCCTTCCHHHHHHHHHHTCSSGGGSC
T ss_pred             HHHHHH-cCCCCCCCccchHHHHHHHHHHcCCChhHCc
Confidence            111110 1111222334445555655555555444444

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=3.9e-30  Score=274.63  Aligned_cols=152  Identities=22%  Similarity=0.326  Sum_probs=126.1

Q ss_pred             ccCCccceeeccC-----------------CeEEEEEEehHhh-HHHHHHHHHHHHHHhhc-chhhHHH-----------
Q 045449          628 DRFSENNLIGIGN-----------------GMEVAVKVFHQQY-ERALKSFEDECEVRKRI-RHRNLVK-----------  677 (823)
Q Consensus       628 ~~f~~~~~lg~g~-----------------~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l-~h~niv~-----------  677 (823)
                      ++|...+.||+|+                 ...||||++.... ....+.|.+|++++.++ +|||||+           
T Consensus        37 ~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~HpnIv~l~~~~~~~~~~  116 (325)
T d1rjba_          37 ENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHENIVNLLGACTLSGPI  116 (325)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSC
T ss_pred             HHeEEeeEEeeCCCeEEEEEEEcCCCcccceeEEEEEEeccccCHHHHHHHHHHHHHHHHhcCCCcEeEEEEEEeeCCeE
Confidence            5677888999986                 1248999886443 34456899999999998 8999998           


Q ss_pred             ----------------------------------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEE
Q 045449          678 ----------------------------------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVL  705 (823)
Q Consensus       678 ----------------------------------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiL  705 (823)
                                                                          ++.|++.+|+|+|+++||||||||+|||
T Consensus       117 ~lv~Ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~gl~yLH~~~IiHRDlKp~Nil  196 (325)
T d1rjba_         117 YLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEFKSCVHRDLAARNVL  196 (325)
T ss_dssp             EEEEECCTTCBHHHHHHTTTTCC---------------------CCHHHHHHHHHHHHHHHHHHHHTTEEETTCSGGGEE
T ss_pred             EEEEEcCCCCcHHHHHHhccCCCcchhhhhccccccccccccCCCCHHHHHHHHHHHHHHHHHHHhCCeeeccCchhccc
Confidence                                                                2358889999999999999999999999


Q ss_pred             eCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccCCCccccccceehhhhhhccccC-CCCCcCCCc
Q 045449          706 LDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKET-RSMTVGETC  779 (823)
Q Consensus       706 l~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~-~~~~~~~~~  779 (823)
                      ++.++.+||+|||+|+...............||+.|||||++.++.|+.++|||||||++|||++ |..||.+..
T Consensus       197 l~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~~DiwS~Gvil~emlt~g~~Pf~~~~  271 (325)
T d1rjba_         197 VTHGKVVKICDFGLARDIMSDSNYVVRGNARLPVKWMAPESLFEGIYTIKSDVWSYGILLWEIFSLGVNPYPGIP  271 (325)
T ss_dssp             EETTTEEEECCCGGGSCGGGCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCC
T ss_pred             cccCCeEEEeeccccccccCCCceeeeccccCCCccCChHHHcCCCCCcceeccchhHHHHHHHhCCCCCCCCCC
Confidence            99999999999999987655444334455678999999999999999999999999999999997 899997653

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=5.2e-30  Score=266.87  Aligned_cols=138  Identities=24%  Similarity=0.318  Sum_probs=115.1

Q ss_pred             eEEEEEEehHhh--HHHHHHHHHHHHHHhhcchhhHHH---------------------------------------HHH
Q 045449          642 MEVAVKVFHQQY--ERALKSFEDECEVRKRIRHRNLVK---------------------------------------IIS  680 (823)
Q Consensus       642 ~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~---------------------------------------~~~  680 (823)
                      +.||||+++...  ....++|.+|++++++++|||||+                                       ++.
T Consensus        35 ~~vAvK~~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~g~~~~~~~~lvmE~~~~g~L~~~l~~~~~l~~~~~~~i~~  114 (277)
T d1xbba_          35 KTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICEAESWMLVMEMAELGPLNKYLQQNRHVKDKNIIELVH  114 (277)
T ss_dssp             EEEEEEEEC-----CHHHHHHHHHHHHHHTCCCTTBCCEEEEEESSSEEEEEECCTTEEHHHHHHHCTTCCHHHHHHHHH
T ss_pred             eEEEEEEEChhhCCHHHHHHHHHHHHHHHhCCCCCCceEEEEeccCCEEEEEEcCCCCcHHHHHhhccCCCHHHHHHHHH
Confidence            569999996443  334578999999999999999998                                       467


Q ss_pred             HHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCcc-ccccccccCCCcCcccccCCCcccccccee
Q 045449          681 SSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQL-SKQTQTLATIGYMAPEYGTKGRVSTRGDVC  759 (823)
Q Consensus       681 ~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~  759 (823)
                      |++.+|+|+|+.+|+||||||+|||++.++.+||+|||+|+........ .......||+.|||||++.+..|+.++|||
T Consensus       115 qi~~gl~ylH~~~iiHrDlKp~Nill~~~~~~kl~DFGla~~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~sDiw  194 (277)
T d1xbba_         115 QVSMGMKYLEESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQTHGKWPVKWYAPECINYYKFSSKSDVW  194 (277)
T ss_dssp             HHHHHHHHHHHTTEECSCCSGGGEEEEETTEEEECCCTTCEECCTTCSEEEC----CCCGGGCCHHHHHHCEEEHHHHHH
T ss_pred             HHHHHHhhHHhCCcccCCCcchhhcccccCcccccchhhhhhccccccccccccccCCCceecCchhhcCCCCCchhhhc
Confidence            8999999999999999999999999999999999999999976544332 223345789999999999999999999999


Q ss_pred             hhhhhhccccC-CCCCcCCCc
Q 045449          760 SFGIISGGKET-RSMTVGETC  779 (823)
Q Consensus       760 S~Gvv~~~~~~-~~~~~~~~~  779 (823)
                      ||||++||+++ |+.||.+..
T Consensus       195 S~Gv~l~ellt~g~~Pf~~~~  215 (277)
T d1xbba_         195 SFGVLMWEAFSYGQKPYRGMK  215 (277)
T ss_dssp             HHHHHHHHHHTTTCCSSTTCC
T ss_pred             cchhhhhHHhhCCCCCCCCCC
Confidence            99999999987 899997753

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

Probab=99.95  E-value=1.2e-29  Score=272.87  Aligned_cols=149  Identities=22%  Similarity=0.333  Sum_probs=131.2

Q ss_pred             hccCCccceeeccC------------CeEEEEEEehHhhHHHHHHHHHHHHHHhhcchhhHHH-----------------
Q 045449          627 TDRFSENNLIGIGN------------GMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVK-----------------  677 (823)
Q Consensus       627 t~~f~~~~~lg~g~------------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~-----------------  677 (823)
                      .++|+..+.||+|+            |+.||||++........+.+.+|++++++++|||||+                 
T Consensus        28 ~d~Y~i~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~ivmE~  107 (352)
T d1koba_          28 YDYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPKLINLHDAFEDKYEMVLILEF  107 (352)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCSTTBCCEEEEEECSSEEEEEEEC
T ss_pred             ccceEEEEEEecCCCeEEEEEEECCCCCEEEEEEECCcchhHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEEc
Confidence            35788889999986            6779999997665555678999999999999999998                 


Q ss_pred             ------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeC--CCCcEEEeecccccccCCCCcccc
Q 045449          678 ------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLD--EDMVAHISDFGIAKLLSGEDQLSK  731 (823)
Q Consensus       678 ------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~--~~~~~kl~DfGla~~~~~~~~~~~  731 (823)
                                              ++.|++.+|+|+|+.||+||||||+|||++  .++.+||+|||+|+.......   
T Consensus       108 ~~gg~L~~~~~~~~~~l~e~~~~~i~~qi~~aL~ylH~~~iiHRDiKp~NILl~~~~~~~vkL~DFGla~~~~~~~~---  184 (352)
T d1koba_         108 LSGGELFDRIAAEDYKMSEAEVINYMRQACEGLKHMHEHSIVHLDIKPENIMCETKKASSVKIIDFGLATKLNPDEI---  184 (352)
T ss_dssp             CCCCBHHHHTTCTTCCBCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESSTTCCCEEECCCTTCEECCTTSC---
T ss_pred             CCCChHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCeeecccccccccccccCCCeEEEeecccceecCCCCc---
Confidence                                    478999999999999999999999999998  568999999999998754432   


Q ss_pred             ccccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCC
Q 045449          732 QTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       732 ~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      .....||+.|+|||++.+..|+.++||||+||++|+|++|..||.+.
T Consensus       185 ~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~  231 (352)
T d1koba_         185 VKVTTATAEFAAPEIVDREPVGFYTDMWAIGVLGYVLLSGLSPFAGE  231 (352)
T ss_dssp             EEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCS
T ss_pred             eeeccCcccccCHHHHcCCCCCCccchHHHHHHHHHHHhCCCCCCCC
Confidence            34467999999999999999999999999999999999999999764

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.95  E-value=4.4e-30  Score=271.23  Aligned_cols=149  Identities=30%  Similarity=0.397  Sum_probs=111.5

Q ss_pred             hccCCccceeeccC------------CeEEEEEEehHhh-HHHHHHHHHHHHHHhhcchhhHHH----------------
Q 045449          627 TDRFSENNLIGIGN------------GMEVAVKVFHQQY-ERALKSFEDECEVRKRIRHRNLVK----------------  677 (823)
Q Consensus       627 t~~f~~~~~lg~g~------------~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~----------------  677 (823)
                      .+.|...+.||+|+            ++.||||++.... ....+.+.+|++++++++|||||+                
T Consensus         8 ~d~Y~~~~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~lvmE   87 (307)
T d1a06a_           8 RDIYDFRDVLGTGAFSEVILAEDKRTQKLVAIKCIAKKALEGKEGSMENEIAVLHKIKHPNIVALDDIYESGGHLYLIMQ   87 (307)
T ss_dssp             GGTEEEEEESBSGGGGGEEEEEETTTCCEEEEEEEEC----------CHHHHHHHTCCCTTBCCEEEEEECSSEEEEEEC
T ss_pred             ccceEEEEEEeeccCeEEEEEEECCCCCEEEEEEEchHHhhhHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEe
Confidence            35677788888885            6779999997543 334467889999999999999999                


Q ss_pred             ------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeC---CCCcEEEeecccccccCCCCccc
Q 045449          678 ------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLD---EDMVAHISDFGIAKLLSGEDQLS  730 (823)
Q Consensus       678 ------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~---~~~~~kl~DfGla~~~~~~~~~~  730 (823)
                                              ++.|++.+|+|+|+.+|+||||||+|||+.   +++.+||+|||+|+......   
T Consensus        88 ~~~gg~L~~~l~~~~~l~e~~~~~~~~qi~~al~ylH~~~iiHrDiKp~Nil~~~~~~~~~vkl~DFG~a~~~~~~~---  164 (307)
T d1a06a_          88 LVSGGELFDRIVEKGFYTERDASRLIFQVLDAVKYLHDLGIVHRDLKPENLLYYSLDEDSKIMISDFGLSKMEDPGS---  164 (307)
T ss_dssp             CCCSCBHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEESSSSTTCCEEECCC-------------
T ss_pred             ccCCCcHHHhhhcccCCCHHHHHHHHHHHHHHHHhhhhceeeeEEecccceeecccCCCceEEEeccceeEEccCCC---
Confidence                                    478999999999999999999999999994   57899999999998764332   


Q ss_pred             cccccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCC
Q 045449          731 KQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       731 ~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      .....+||+.|||||++.+..|+.++||||+||++|+|++|..||.+.
T Consensus       165 ~~~~~~GT~~y~APE~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~  212 (307)
T d1a06a_         165 VLSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGYPPFYDE  212 (307)
T ss_dssp             --------CTTSCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred             eeeeeeeCccccCcHHHcCCCCCcHHHhhhhhHHHHHHHhCCCCCCCC
Confidence            233467999999999999999999999999999999999999999764

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=5e-30  Score=272.88  Aligned_cols=152  Identities=24%  Similarity=0.312  Sum_probs=123.6

Q ss_pred             ccCCccceeeccC------------C----eEEEEEEehHhh-HHHHHHHHHHHHHHhhcchhhHHH-------------
Q 045449          628 DRFSENNLIGIGN------------G----MEVAVKVFHQQY-ERALKSFEDECEVRKRIRHRNLVK-------------  677 (823)
Q Consensus       628 ~~f~~~~~lg~g~------------~----~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~-------------  677 (823)
                      .+|+..+.||+|+            |    ..||||+++... .+..++|.+|++++++++|||||+             
T Consensus         9 ~dy~~~~~lG~G~fG~Vy~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~g~~~~~~~~~v   88 (317)
T d1xkka_           9 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTSTVQLI   88 (317)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEECC----CCEEEEEEEECC----CTHHHHHHHHHHHHHCCCTTBCCEEEEEESSSEEEE
T ss_pred             HHCEEeeEEecCCCeEEEEEEEcCCCCEEEEEEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCeeEE
Confidence            3578888999986            1    248999886433 345678999999999999999999             


Q ss_pred             ---------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccc
Q 045449          678 ---------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLS  730 (823)
Q Consensus       678 ---------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~  730 (823)
                                                 ++.|++.+|+|+|+++|+||||||+|||++.++.+||+|||+|+.........
T Consensus        89 ~e~~~~~~l~~~~~~~~~~~~~~~~~~i~~qi~~gl~yLH~~~iiHrDlKp~NIll~~~~~~kl~DFGla~~~~~~~~~~  168 (317)
T d1xkka_          89 TQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEY  168 (317)
T ss_dssp             EECCTTCBHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEEETTEEEECCCSHHHHTTTTCC--
T ss_pred             EEeccCCcccccccccccCCCHHHHHHHHHHHHHHHHHHHHcCcccCcchhhcceeCCCCCeEeeccccceecccccccc
Confidence                                       36789999999999999999999999999999999999999999876554433


Q ss_pred             cccccccCCCcCcccccCCCccccccceehhhhhhccccC-CCCCcCCCc
Q 045449          731 KQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKET-RSMTVGETC  779 (823)
Q Consensus       731 ~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~-~~~~~~~~~  779 (823)
                      ......||+.|+|||++.++.|+.++|||||||++||+++ |..||.+..
T Consensus       169 ~~~~~~gt~~y~APE~l~~~~~~~~sDvwS~Gvil~el~t~g~~p~~~~~  218 (317)
T d1xkka_         169 HAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIP  218 (317)
T ss_dssp             ------CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSC
T ss_pred             cccccccCccccChHHHhcCCCChhhhhhhHHHHHHHHHHCCCCCCCCCC
Confidence            3445678999999999999999999999999999999998 788887643

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

Probab=99.95  E-value=2.2e-29  Score=270.49  Aligned_cols=149  Identities=23%  Similarity=0.311  Sum_probs=131.1

Q ss_pred             hccCCccceeeccC------------CeEEEEEEehHhhHHHHHHHHHHHHHHhhcchhhHHH-----------------
Q 045449          627 TDRFSENNLIGIGN------------GMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVK-----------------  677 (823)
Q Consensus       627 t~~f~~~~~lg~g~------------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~-----------------  677 (823)
                      .++|...+.||+|+            |..||||++........+.+.+|++++++++|||||+                 
T Consensus        25 l~~Y~i~~~lG~G~fg~Vy~~~~~~~g~~vAvK~i~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~ivmE~  104 (350)
T d1koaa2          25 LDHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTLVNLHDAFEDDNEMVMIYEF  104 (350)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECCCSHHHHHHHHHHHHHHHHTCCTTBCCEEEEEEETTEEEEEECC
T ss_pred             ccCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEEcccchhhHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEEc
Confidence            35788889999997            6779999997766666688999999999999999998                 


Q ss_pred             ------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeC--CCCcEEEeecccccccCCCCcccc
Q 045449          678 ------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLD--EDMVAHISDFGIAKLLSGEDQLSK  731 (823)
Q Consensus       678 ------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~--~~~~~kl~DfGla~~~~~~~~~~~  731 (823)
                                              ++.|++.+|+|+|+.+||||||||+|||++  .++.+||+|||+|+.+.....   
T Consensus       105 ~~gg~L~~~l~~~~~~l~e~~~~~i~~qi~~aL~ylH~~~iiHrDiKp~NIll~~~~~~~vkL~DFG~a~~~~~~~~---  181 (350)
T d1koaa2         105 MSGGELFEKVADEHNKMSEDEAVEYMRQVCKGLCHMHENNYVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDPKQS---  181 (350)
T ss_dssp             CCSCBHHHHHTCTTSCBCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESSTTSCCEEECCCTTCEECCTTSC---
T ss_pred             CCCCCHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhcCCeeeeechhHeeeccCCCCeEEEeecchheecccccc---
Confidence                                    468999999999999999999999999996  457999999999998654332   


Q ss_pred             ccccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCC
Q 045449          732 QTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       732 ~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      .....||+.|||||++.+..|+.++||||+||++|+|++|..||.+.
T Consensus       182 ~~~~~gT~~Y~aPEv~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~  228 (350)
T d1koaa2         182 VKVTTGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSGLSPFGGE  228 (350)
T ss_dssp             EEEECSCTTTCCHHHHHTCCBCHHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             cceecCcccccCHHHHcCCCCChhHhhhhhhHHHHHHHhCCCCCCCC
Confidence            34467999999999999999999999999999999999999999754

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.94  E-value=4.8e-29  Score=260.25  Aligned_cols=152  Identities=26%  Similarity=0.470  Sum_probs=123.5

Q ss_pred             hccCCccceeeccC------------CeEEEEEEehHhh---HHHHHHHHHHHHHHhhcchhhHHH--------------
Q 045449          627 TDRFSENNLIGIGN------------GMEVAVKVFHQQY---ERALKSFEDECEVRKRIRHRNLVK--------------  677 (823)
Q Consensus       627 t~~f~~~~~lg~g~------------~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~--------------  677 (823)
                      .++|...+.||+|+            |+.||||+++...   ....+.|.+|++++++++|||||+              
T Consensus         6 ~drY~i~~~lG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~~l~~~~hpniv~~~~~~~~~~~~~~~   85 (277)
T d1o6ya_           6 SDRYELGEILGFGGMSEVHLARDLRLHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAGPL   85 (277)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSTTTTCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEECSSSEE
T ss_pred             cceeEEeEEEeeCCCeEEEEEEECCCCCEEEEEEEchhhccCHHHHHHHHHHHHHHHhcCCCCCCcccceeeeccCCCce
Confidence            36788889999986            6789999996432   455678999999999999999998              


Q ss_pred             ------------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCC
Q 045449          678 ------------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGED  727 (823)
Q Consensus       678 ------------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~  727 (823)
                                                    ++.|++.+|+|+|+.+|+||||||+|||++.++..+++|||.++......
T Consensus        86 ~~lvmE~~~g~~L~~~~~~~~~l~~~~~~~i~~qi~~al~~lH~~~iiHrDiKP~NIll~~~~~~~l~d~~~~~~~~~~~  165 (277)
T d1o6ya_          86 PYIVMEYVDGVTLRDIVHTEGPMTPKRAIEVIADACQALNFSHQNGIIHRDVKPANIMISATNAVKVMDFGIARAIADSG  165 (277)
T ss_dssp             EEEEEECCCEEEHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEETTSCEEECCCTTCEECC---
T ss_pred             EEEEEECCCCCEehhhhcccCCCCHHHHHHHHHHHHHHHHHHHhCCccCccccCcccccCccccceeehhhhhhhhcccc
Confidence                                          46899999999999999999999999999999999999999987654332


Q ss_pred             c-cccccccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCC
Q 045449          728 Q-LSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       728 ~-~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      . .......+||+.|||||++.+..|+.++||||+||++|+|++|..||.+.
T Consensus       166 ~~~~~~~~~~Gt~~Y~aPE~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~  217 (277)
T d1o6ya_         166 NSVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGD  217 (277)
T ss_dssp             -------------TTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred             ccccccccccCcccccCHHHHcCCCCCcceecccchHHHHHHHhCCCCCCCc
Confidence            2 12234568999999999999999999999999999999999999999764

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=3.1e-29  Score=257.88  Aligned_cols=190  Identities=17%  Similarity=0.243  Sum_probs=141.7

Q ss_pred             ccCCccceeeccC-----------CeEEEEEEehHhhHHHHHHHHHHHHHHhhcchhhHHH-------------------
Q 045449          628 DRFSENNLIGIGN-----------GMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVK-------------------  677 (823)
Q Consensus       628 ~~f~~~~~lg~g~-----------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~-------------------  677 (823)
                      ++|...+.||+|+           +..||||+++.... ..++|.+|++++++++|||||+                   
T Consensus         4 ~~~~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~l~~~~~-~~~~~~~Ev~~~~~l~HpnIv~~~g~~~~~~~~~iv~Ey~~   82 (258)
T d1k2pa_           4 KDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGSM-SEDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFIITEYMA   82 (258)
T ss_dssp             CCCCCCCCCCEETTEEEEEEEETTTEEEEEEEEESSSS-CHHHHHHHHHHHHTCCCTTBCCEEEEECCSSSEEEEEECCT
T ss_pred             HHCEEeEEEecCCCeEEEEEEECCCCEEEEEEECcCcC-CHHHHHHHHHHHHhcCCCceeeEEEEEeeCCceEEEEEccC
Confidence            4667777788775           56799999975432 2368999999999999999999                   


Q ss_pred             ----------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCcccccccc
Q 045449          678 ----------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQT  735 (823)
Q Consensus       678 ----------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~  735 (823)
                                            ++.|++++|.|+|+.+|+||||||+||+++.++.+||+|||+|+....... ......
T Consensus        83 ~g~l~~~~~~~~~~~~~~~~~~i~~qi~~gl~~LH~~~iiH~dlk~~Nill~~~~~~kl~DfG~a~~~~~~~~-~~~~~~  161 (258)
T d1k2pa_          83 NGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLESKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEY-TSSVGS  161 (258)
T ss_dssp             TEEHHHHHHSGGGCCCHHHHHHHHHHHHHHHHHHHHTTBCCSCCSGGGEEECTTCCEEECCCSSCCBCSSSSC-CCCCCS
T ss_pred             CCcHHHhhhccccCCcHHHHHHHHHHHHHHHHHHhhcCcccccccceeEEEcCCCcEEECcchhheeccCCCc-eeeccc
Confidence                                  356888999999999999999999999999999999999999987654433 233456


Q ss_pred             ccCCCcCcccccCCCccccccceehhhhhhccccC-CCCCcCCCcccccccccccCCcccccccCCCccccccccccccc
Q 045449          736 LATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKET-RSMTVGETCTPVRESKYEVHPATTTIMEHPLPRVGEVMDVDRGK  814 (823)
Q Consensus       736 ~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  814 (823)
                      .||+.|+|||++.+..|+.++|||||||++||+++ |+.||++............ ......+....+.+.+++..+...
T Consensus       162 ~~t~~y~aPE~~~~~~~~~ksDiwS~G~~l~el~t~g~~Pf~~~~~~~~~~~i~~-~~~~~~p~~~~~~l~~li~~cl~~  240 (258)
T d1k2pa_         162 KFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTNSETAEHIAQ-GLRLYRPHLASEKVYTIMYSCWHE  240 (258)
T ss_dssp             CCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSCHHHHHHHHHT-TCCCCCCTTCCHHHHHHHHHTTCS
T ss_pred             CCCCCcCCcHHhcCCCCCcceeecccchhhHhHHhcCCCCCCCCCHHHHHHHHHh-CCCCCCcccccHHHHHHHHHHccC
Confidence            79999999999999999999999999999999997 7889877543321111111 011112233444555666555555


Q ss_pred             ccccCC
Q 045449          815 ARIQGK  820 (823)
Q Consensus       815 ~~~~~~  820 (823)
                      .+-+||
T Consensus       241 dP~~RP  246 (258)
T d1k2pa_         241 KADERP  246 (258)
T ss_dssp             SGGGSC
T ss_pred             CHhHCc
Confidence            444444

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.94  E-value=1.5e-26  Score=245.18  Aligned_cols=246  Identities=22%  Similarity=0.314  Sum_probs=181.4

Q ss_pred             ccceeeeeCCCCCcEEEEEcCCCCCccccCcccCCCCCCcEEEccCCCCCCCCCCCCCCCCCCCEEECCCCcCcCCCchh
Q 045449           40 CIWIGITCDVNSHRVIGLNISSFNLQGTITPQLGNLSSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQLFGSLSSF  119 (823)
Q Consensus        40 c~w~gv~c~~~~~~v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~  119 (823)
                      |.|.+|.|+.            ++++ .+|+.+.  +++++|||++|+|+...+.+|.++++|++|++++|.+....|..
T Consensus        10 c~~~~~~C~~------------~~L~-~lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~   74 (305)
T d1xkua_          10 CHLRVVQCSD------------LGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGA   74 (305)
T ss_dssp             EETTEEECTT------------SCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTT
T ss_pred             ecCCEEEecC------------CCCC-ccCCCCC--CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhh
Confidence            7888999974            3355 5676663  68999999999999766778999999999999999999888999


Q ss_pred             hhcCCCCcEEecccccccCccCccccCCCCCCccccccceeeeccceeeccCccccccchhhHHHHHhhcCCCcccCCcc
Q 045449          120 IFNMSSMTTIDLSINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEIGNLTKLKEIISTITNSTVCEIPRE  199 (823)
Q Consensus       120 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~~l~~n~~~~~ip~~  199 (823)
                      |.++++|++|++++|+++ .+|..+         ...|+.|+++.|.+.+..+..+..                      
T Consensus        75 f~~l~~L~~L~l~~n~l~-~l~~~~---------~~~l~~L~~~~n~l~~l~~~~~~~----------------------  122 (305)
T d1xkua_          75 FAPLVKLERLYLSKNQLK-ELPEKM---------PKTLQELRVHENEITKVRKSVFNG----------------------  122 (305)
T ss_dssp             TTTCTTCCEEECCSSCCS-BCCSSC---------CTTCCEEECCSSCCCBBCHHHHTT----------------------
T ss_pred             hhCCCccCEecccCCccC-cCccch---------hhhhhhhhccccchhhhhhhhhhc----------------------
Confidence            999999999999999998 445433         357899999999887543322222                      


Q ss_pred             cCCcchhhhhccccccc--cCCccccccCCCCCcEEEccCCcccccCCcccccCCCCccEEEeeccccccccCccccCCC
Q 045449          200 IGNLPYLARLALATNNL--VGVVPVTIFNMSALKEISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSITNSS  277 (823)
Q Consensus       200 l~~l~~L~~L~Ls~N~l--~~~~p~~~~~l~~L~~L~Ls~N~l~g~lp~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~  277 (823)
                         ...+..++...|..  ....+..+..+++|+.+++++|.++ .+|..+   +++|+.|++++|.+.+..+..+.+++
T Consensus       123 ---~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~-~l~~~~---~~~L~~L~l~~n~~~~~~~~~~~~~~  195 (305)
T d1xkua_         123 ---LNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL---PPSLTELHLDGNKITKVDAASLKGLN  195 (305)
T ss_dssp             ---CTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSC---CTTCSEEECTTSCCCEECTGGGTTCT
T ss_pred             ---cccccccccccccccccCCCccccccccccCccccccCCcc-ccCccc---CCccCEEECCCCcCCCCChhHhhccc
Confidence               12233344444432  2334556777788888888888887 566543   56788888888888888888888888


Q ss_pred             CCCeEEeecccccccCCCccCCCcccCcccccCccccCCCCcccccccccCCCCceEEEeecCCCCcc
Q 045449          278 KLSDLELGENLFSGFIPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGI  345 (823)
Q Consensus       278 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~  345 (823)
                      .+++|++++|.+++..+..|.++++|++|+|++|.++..      +.++.++++|++|+|++|+|+..
T Consensus       196 ~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~l------p~~l~~l~~L~~L~Ls~N~i~~i  257 (305)
T d1xkua_         196 NLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKV------PGGLADHKYIQVVYLHNNNISAI  257 (305)
T ss_dssp             TCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSC------CTTTTTCSSCCEEECCSSCCCCC
T ss_pred             cccccccccccccccccccccccccceeeeccccccccc------ccccccccCCCEEECCCCccCcc
Confidence            888888888888877777777777777777777777653      33456666666666666666643

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.94  E-value=9.3e-29  Score=267.25  Aligned_cols=147  Identities=25%  Similarity=0.240  Sum_probs=122.2

Q ss_pred             ccCCccceeeccC------------CeEEEEEEehHhhH---HHHHHHH---HHHHHHhhcchhhHHH------------
Q 045449          628 DRFSENNLIGIGN------------GMEVAVKVFHQQYE---RALKSFE---DECEVRKRIRHRNLVK------------  677 (823)
Q Consensus       628 ~~f~~~~~lg~g~------------~~~vavK~~~~~~~---~~~~~~~---~E~~~l~~l~h~niv~------------  677 (823)
                      ++|...+.||+|+            |+.||||++.....   .....+.   +|+++++.++|||||+            
T Consensus         4 ddy~i~~~lG~G~fg~Vy~~~~~~t~~~vAiK~i~~~~~~~~~~~~~~~~e~~~~~~l~~~~hpnIv~l~~~~~~~~~~~   83 (364)
T d1omwa3           4 NDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKLS   83 (364)
T ss_dssp             TTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEECSSEEE
T ss_pred             HhCeeeeEEecCCCeEEEEEEECCCCCEEEEEEEchHHcchhhHHHHHHHHHHHHHHHhcCCCCcEEEEEEEEEECCEEE
Confidence            5788889999996            67799999864431   1122333   4567777889999998            


Q ss_pred             ----------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCcc
Q 045449          678 ----------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQL  729 (823)
Q Consensus       678 ----------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~  729 (823)
                                                  ++.|++.+|+|+|+.+|+||||||+|||++.++.+||+|||+|+......  
T Consensus        84 ivmE~~~gg~L~~~l~~~~~~~e~~~~~~~~qi~~aL~ylH~~~iiHrDlKP~NILl~~~g~iKl~DFGla~~~~~~~--  161 (364)
T d1omwa3          84 FILDLMNGGDLHYHLSQHGVFSEADMRFYAAEIILGLEHMHNRFVVYRDLKPANILLDEHGHVRISDLGLACDFSKKK--  161 (364)
T ss_dssp             EEECCCCSCBHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECSSSCEEECCCTTCEECSSSC--
T ss_pred             EEEEecCCCcHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHCCccceeeccceeEEcCCCcEEEeeeceeeecCCCc--
Confidence                                        46799999999999999999999999999999999999999999765432  


Q ss_pred             ccccccccCCCcCcccccCC-CccccccceehhhhhhccccCCCCCcCCC
Q 045449          730 SKQTQTLATIGYMAPEYGTK-GRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       730 ~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                        ....+||+.|+|||++.. ..|+.++||||+||++|+|++|..||.+.
T Consensus       162 --~~~~~GT~~y~APE~~~~~~~~~~~~DiwSlGvilyemltG~~Pf~~~  209 (364)
T d1omwa3         162 --PHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQH  209 (364)
T ss_dssp             --CCSCCSCGGGCCHHHHSTTCCCCTHHHHHHHHHHHHHHHHSSCSSCSS
T ss_pred             --ccccccccccchhHHhhcCCCCCcccchhHHHHHHHHHHhCCCCCCCC
Confidence              234679999999999875 46899999999999999999999999764

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=2.8e-29  Score=265.24  Aligned_cols=151  Identities=25%  Similarity=0.312  Sum_probs=117.6

Q ss_pred             ccCCccceeeccC-----------------CeEEEEEEehHhh-HHHHHHHHHHHHHHhhc-chhhHHH-----------
Q 045449          628 DRFSENNLIGIGN-----------------GMEVAVKVFHQQY-ERALKSFEDECEVRKRI-RHRNLVK-----------  677 (823)
Q Consensus       628 ~~f~~~~~lg~g~-----------------~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l-~h~niv~-----------  677 (823)
                      ++|...+.||+|+                 ++.||||+++... ....+.|.+|++++.++ +|+|||.           
T Consensus        13 ~~y~~~~~iG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~e~~~l~~~~~h~~iv~~~~~~~~~~~~   92 (299)
T d1ywna1          13 DRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPGGP   92 (299)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEEESTTSSSCEEEEEEEEC----CHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSTTSC
T ss_pred             HHEEEeeEEeecCCeEEEEEEEcCCCcccCCeEEEEEEEccccCcHHHHHHHHHHHHHHhhcCCCeEEEeeeeeccCCCe
Confidence            5677788899886                 2469999997543 44457788899888887 6888887           


Q ss_pred             ----------------------------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCc
Q 045449          678 ----------------------------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMV  711 (823)
Q Consensus       678 ----------------------------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~  711 (823)
                                                                    ++.|++.+|+|+|+++||||||||+|||++.++.
T Consensus        93 ~~iv~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~gl~ylH~~~ivHrDlKp~NILl~~~~~  172 (299)
T d1ywna1          93 LMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNILLSEKNV  172 (299)
T ss_dssp             CEEEEECCTTCBHHHHHHHTGGGBCC-----------CBCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECGGGC
T ss_pred             EEEEEEecCCCcHHHHHHhccccccccccchhhhhcccCCHHHHHHHHHHHHHHHHHHHhCCCcCCcCCccceeECCCCc
Confidence                                                          2458899999999999999999999999999999


Q ss_pred             EEEeecccccccCCCCccccccccccCCCcCcccccCCCccccccceehhhhhhccccCCC-CCcCCC
Q 045449          712 AHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRS-MTVGET  778 (823)
Q Consensus       712 ~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~-~~~~~~  778 (823)
                      +||+|||+|+..............+||+.|+|||++.++.|+.++|||||||++||++++. .||.+.
T Consensus       173 ~Kl~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~sDiwS~Gvil~ellt~~~~p~~~~  240 (299)
T d1ywna1         173 VKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGV  240 (299)
T ss_dssp             EEECC------CCSCTTSCCTTSCCCGGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTC
T ss_pred             EEEccCcchhhccccccccccCceeeCccccchhHhhcCCCCcccceeehHHHHHHHHhCCCCCCCCC
Confidence            9999999999765544444445678999999999999999999999999999999999865 566554

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=2.5e-29  Score=261.13  Aligned_cols=152  Identities=24%  Similarity=0.288  Sum_probs=118.6

Q ss_pred             ccCCccceeeccC---------------CeEEEEEEehHhh---HHHHHHHHHHHHHHhhcchhhHHH------------
Q 045449          628 DRFSENNLIGIGN---------------GMEVAVKVFHQQY---ERALKSFEDECEVRKRIRHRNLVK------------  677 (823)
Q Consensus       628 ~~f~~~~~lg~g~---------------~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~------------  677 (823)
                      ++|+..+.||+|+               ...||||++....   ....++|.+|++++++++|||||+            
T Consensus         8 ~d~~~~~~iG~G~fg~Vy~~~~~~~~~~~~~vAiK~l~~~~~~~~~~~~~~~~Ei~~l~~l~H~nIv~~~g~~~~~~~~l   87 (273)
T d1u46a_           8 KDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLTPPMKM   87 (273)
T ss_dssp             GGEEEEEECC----CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSCEE
T ss_pred             HHeEEEEEEecCCCeEEEEEEEECCCCcEEEEEEEEEChhhcCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEeecchhe
Confidence            3466666777765               2358999987543   344578999999999999999998            


Q ss_pred             ----------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCcc
Q 045449          678 ----------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQL  729 (823)
Q Consensus       678 ----------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~  729 (823)
                                                  ++.|++++|+|+|+++|+||||||+||+++.++.+||+|||+++........
T Consensus        88 v~e~~~~~~l~~~~~~~~~~l~~~~~~~~~~qi~~gl~ylH~~~iiHrDikp~NIll~~~~~vkl~DfGl~~~~~~~~~~  167 (273)
T d1u46a_          88 VTELAPLGSLLDRLRKHQGHFLLGTLSRYAVQVAEGMGYLESKRFIHRDLAARNLLLATRDLVKIGDFGLMRALPQNDDH  167 (273)
T ss_dssp             EEECCTTCBHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEEEETTEEEECCCTTCEECCC-CCE
T ss_pred             eeeeecCcchhhhhhcccCCCCHHHHHHHHHHHHHHHHHhhhCCEeeeeecHHHhccccccceeeccchhhhhcccCCCc
Confidence                                        4678999999999999999999999999999999999999999987544332


Q ss_pred             c-cccccccCCCcCcccccCCCccccccceehhhhhhccccC-CCCCcCCCc
Q 045449          730 S-KQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKET-RSMTVGETC  779 (823)
Q Consensus       730 ~-~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~-~~~~~~~~~  779 (823)
                      . ......||..|+|||++.+..++.++|||||||++||+++ |..||.+..
T Consensus       168 ~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~S~Gvil~emlt~G~~Pf~~~~  219 (273)
T d1u46a_         168 YVMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGLN  219 (273)
T ss_dssp             EEC-----CCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCTTTTCC
T ss_pred             ceecCccccCcccCCHHHHhCCCCCcchhhhhhHHHHHHHHhCCCCCCCCcC
Confidence            2 2234567889999999999999999999999999999997 899997653

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=2.5e-29  Score=262.25  Aligned_cols=148  Identities=26%  Similarity=0.445  Sum_probs=119.4

Q ss_pred             ccCCccceeeccC-----------CeEEEEEEehHhhHHHHHHHHHHHHHHhhcchhhHHH-------------------
Q 045449          628 DRFSENNLIGIGN-----------GMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVK-------------------  677 (823)
Q Consensus       628 ~~f~~~~~lg~g~-----------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~-------------------  677 (823)
                      ++|+..+.||+|+           +..||||++..... ..+.|.+|++++++++|||||+                   
T Consensus        17 ~~~~i~~~iG~G~fg~Vy~~~~~~~~~vAiK~l~~~~~-~~~~~~~E~~~l~~l~h~nIv~~~g~~~~~~~~lv~Ey~~~   95 (285)
T d1fmka3          17 ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTM-SPEAFLQEAQVMKKLRHEKLVQLYAVVSEEPIYIVTEYMSK   95 (285)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTEEEEEEECCTTSS-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSCEEEECCCTT
T ss_pred             HHEEEeeEEeeCCCeEEEEEEECCCCEEEEEEECcccC-CHHHHHHHHHHHHhcccCCEeEEEEEEecCCeEEEEEecCC
Confidence            5788889999996           45699999975532 3367999999999999999999                   


Q ss_pred             ----------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCcccccccc
Q 045449          678 ----------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQT  735 (823)
Q Consensus       678 ----------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~  735 (823)
                                            ++.|++.+|+|+|+.+|+||||||+|||+|.++.+||+|||+|+....... ......
T Consensus        96 g~l~~~~~~~~~~~l~~~~~~~i~~~i~~gl~~LH~~~ivH~DlKp~NIll~~~~~~kl~DfGla~~~~~~~~-~~~~~~  174 (285)
T d1fmka3          96 GSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEY-TARQGA  174 (285)
T ss_dssp             CBHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGGCEEECCCCTTC--------------
T ss_pred             CchhhhhhhcccccchHHHHHHHHHHHHHHHHHHhhhheecccccceEEEECCCCcEEEcccchhhhccCCCc-eeeccc
Confidence                                  467888999999999999999999999999999999999999987643332 223446


Q ss_pred             ccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCC
Q 045449          736 LATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGE  777 (823)
Q Consensus       736 ~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~  777 (823)
                      .||+.|+|||++..+.++.++|||||||++||++++..|+..
T Consensus       175 ~gt~~y~aPE~~~~~~~~~ksDI~S~Giil~el~t~~~p~~~  216 (285)
T d1fmka3         175 KFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYP  216 (285)
T ss_dssp             -CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSST
T ss_pred             cccccccChHHHhCCCCCcHHhhhcchHHHHHHHhCCCCCCC
Confidence            799999999999999999999999999999999997666543

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=6e-29  Score=258.85  Aligned_cols=151  Identities=22%  Similarity=0.299  Sum_probs=115.8

Q ss_pred             ccCCccceeeccC---------------CeEEEEEEehHhh-HHHHHHHHHHHHHHhhcchhhHHH--------------
Q 045449          628 DRFSENNLIGIGN---------------GMEVAVKVFHQQY-ERALKSFEDECEVRKRIRHRNLVK--------------  677 (823)
Q Consensus       628 ~~f~~~~~lg~g~---------------~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~--------------  677 (823)
                      ++|...+.||+|+               +..||||+++... ....+.|.+|++++++++|||||+              
T Consensus         7 ~~~~l~~~iG~G~fg~Vy~a~~~~~~~~~~~vaik~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~~~~~~iv~   86 (273)
T d1mp8a_           7 ERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVITENPVWIIM   86 (273)
T ss_dssp             GGEEEEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTTTSHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSCEEEE
T ss_pred             HHeEEEEEEeeCCCcEEEEEEEecCCceeEEEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCeEEEEE
Confidence            4677778888886               2358899886433 445678999999999999999998              


Q ss_pred             --------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCcccc
Q 045449          678 --------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSK  731 (823)
Q Consensus       678 --------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~  731 (823)
                                                ++.|++++|+|+|+++|+||||||+||+++.++.+||+|||+|+....... ..
T Consensus        87 E~~~~g~l~~~~~~~~~~l~~~~~~~~~~qi~~gl~ylH~~~iiHrDlKp~NIll~~~~~~Kl~DfG~a~~~~~~~~-~~  165 (273)
T d1mp8a_          87 ELCTLGELRSFLQVRKYSLDLASLILYAYQLSTALAYLESKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTY-YK  165 (273)
T ss_dssp             ECCTTEEHHHHHHHTTTTSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEEETTEEEECC---------------
T ss_pred             EeccCCcHHhhhhccCCCCCHHHHHHHHHHHHHHhhhhcccCeeccccchhheeecCCCcEEEccchhheeccCCcc-ee
Confidence                                      367899999999999999999999999999999999999999987654322 22


Q ss_pred             ccccccCCCcCcccccCCCccccccceehhhhhhccccC-CCCCcCCCc
Q 045449          732 QTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKET-RSMTVGETC  779 (823)
Q Consensus       732 ~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~-~~~~~~~~~  779 (823)
                      .....||+.|+|||++.++.|+.++|||||||++||+++ |..||.+..
T Consensus       166 ~~~~~gt~~y~apE~l~~~~~~~~~DiwSlGvil~e~lt~g~~P~~~~~  214 (273)
T d1mp8a_         166 ASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVK  214 (273)
T ss_dssp             -----CCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCTTTTCC
T ss_pred             ccceecCcccchhhHhccCCCCCccccccchHHHHHHHhcCCCCCCCCC
Confidence            344678999999999999999999999999999999987 788887653

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=8.5e-29  Score=260.37  Aligned_cols=149  Identities=24%  Similarity=0.371  Sum_probs=128.0

Q ss_pred             hccCCccceeeccC------------CeEEEEEEehHhh------HHHHHHHHHHHHHHhhcchhhHHH-----------
Q 045449          627 TDRFSENNLIGIGN------------GMEVAVKVFHQQY------ERALKSFEDECEVRKRIRHRNLVK-----------  677 (823)
Q Consensus       627 t~~f~~~~~lg~g~------------~~~vavK~~~~~~------~~~~~~~~~E~~~l~~l~h~niv~-----------  677 (823)
                      .++|...+.||+|+            |+.||||++....      ....+.|.+|++++++++|||||+           
T Consensus         9 ~d~Y~~~~~lG~G~fg~Vy~~~~~~~~~~~AvK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~   88 (293)
T d1jksa_           9 DDYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENKTDV   88 (293)
T ss_dssp             GGTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEE
T ss_pred             ccCEEEeEEEecCCCeEEEEEEECCCCCEEEEEEEEhhhcchhhhhHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEE
Confidence            36788889999986            6779999986432      123478999999999999999999           


Q ss_pred             -----------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCC----cEEEeecccccccC
Q 045449          678 -----------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDM----VAHISDFGIAKLLS  724 (823)
Q Consensus       678 -----------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~----~~kl~DfGla~~~~  724 (823)
                                                   ++.|++.+|+|+|+.+|+||||||+|||++.++    .+|++|||+|+...
T Consensus        89 ~iv~E~~~gg~L~~~i~~~~~l~~~~~~~~~~qi~~al~yLH~~~ivHrDiKp~Nill~~~~~~~~~vkl~DfG~a~~~~  168 (293)
T d1jksa_          89 ILILELVAGGELFDFLAEKESLTEEEATEFLKQILNGVYYLHSLQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKID  168 (293)
T ss_dssp             EEEEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEESCSSSSSCCEEECCCTTCEECT
T ss_pred             EEEEEcCCCccccchhccccccchhHHHHHHHHHHHHHHhhhhcceeecccccceEEEecCCCcccceEecchhhhhhcC
Confidence                                         468999999999999999999999999998766    59999999998865


Q ss_pred             CCCccccccccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCC
Q 045449          725 GEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       725 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      ....   .....||+.|+|||++.+..|+.++||||+||++|+|++|..||.+.
T Consensus       169 ~~~~---~~~~~~t~~y~APE~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~  219 (293)
T d1jksa_         169 FGNE---FKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGD  219 (293)
T ss_dssp             TSCB---CSCCCCCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             CCcc---ccccCCCCcccCHHHHcCCCCCCcccchhhhHHHHHHHcCCCCCCCC
Confidence            4332   34467999999999999999999999999999999999999999764

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=9.6e-27  Score=243.87  Aligned_cols=267  Identities=19%  Similarity=0.171  Sum_probs=163.2

Q ss_pred             EEEccCCcccccCCcccccCCCCccEEEeeccccccccCccccCCCCCCeEEeecccccccCCCccCCCcccCccccc-C
Q 045449          232 EISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSITNSSKLSDLELGENLFSGFIPNTIGNLRNLEFGNIA-D  310 (823)
Q Consensus       232 ~L~Ls~N~l~g~lp~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~-~  310 (823)
                      .++.++++++ .+|..+.   +++++|+|++|+|+...+.+|.++++|++|++++|++.++.+..+..++.++.++.. .
T Consensus        15 ~v~c~~~~L~-~iP~~ip---~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~   90 (284)
T d1ozna_          15 TTSCPQQGLQ-AVPVGIP---AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN   90 (284)
T ss_dssp             EEECCSSCCS-SCCTTCC---TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred             EEEcCCCCCC-ccCCCCC---CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccc
Confidence            4566666676 6776553   457778888888876666677778888888888888877777777777777766543 4


Q ss_pred             ccccCCCCcccccccccCCCCceEEEeecCCCCccCCccccccccccceEEecCCcceeccCccccCcccccEEEcccCc
Q 045449          311 NYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGILPKSIGNFSLSLETILMANCSISGNIPQVVGNLSNLLVLELGGNN  390 (823)
Q Consensus       311 N~l~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~  390 (823)
                      |.++..     .+..|.++++|++|++++|.+.+..+..+... .+|+.+++++|+|++..+..|..+++|+.|++++|+
T Consensus        91 ~~~~~l-----~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~-~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~  164 (284)
T d1ozna_          91 AQLRSV-----DPATFHGLGRLHTLHLDRCGLQELGPGLFRGL-AALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR  164 (284)
T ss_dssp             TTCCCC-----CTTTTTTCTTCCEEECTTSCCCCCCTTTTTTC-TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             cccccc-----cchhhcccccCCEEecCCcccccccccccchh-cccchhhhccccccccChhHhccccchhhcccccCc
Confidence            444444     23456666666666666666665555545444 456666666666665555666666666666666666


Q ss_pred             CCCCchhcccccCCCCEEEccCCCCCCcchHhhhcCCCCCEEEcccCcCcccccccccCCCCCCeEeccCCccccccchh
Q 045449          391 LTGPIPVTFSQLQTLQAFDLTRNKLAGPITDELCHLARLHSLVLQGNKFSGSIPSCLGNLTSVRVLYLGLNIFTSVLSST  470 (823)
Q Consensus       391 l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~  470 (823)
                      +++..+..|.++++|+++++++|++++..|..|.++++|++||+++|++++..|..|+++++|++|+|++|.+...-+. 
T Consensus       165 l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~~-  243 (284)
T d1ozna_         165 ISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA-  243 (284)
T ss_dssp             CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGG-
T ss_pred             ccccchhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCCccc-
Confidence            6655556666666666666666666666666666666666666666666666666666666666666666666553321 


Q ss_pred             hhccCCCcEEeccccccccccCccccCCCCCcEEEcccCCCC
Q 045449          471 IWNLKDILFIDVSSNFLDGPLSLDIGNLKVVIGLDFSRNNLS  512 (823)
Q Consensus       471 ~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~ls~N~l~  512 (823)
                      .+-...++.+....+.+.+..|..+..   ....+++.+.|+
T Consensus       244 ~~l~~~l~~~~~~~~~~~C~~p~~l~g---~~l~~l~~~~l~  282 (284)
T d1ozna_         244 RPLWAWLQKFRGSSSEVPCSLPQRLAG---RDLKRLAANDLQ  282 (284)
T ss_dssp             HHHHHHHHHCCSEECCCBEEESGGGTT---CBGGGSCGGGSC
T ss_pred             hHHHHHHHhCcCCCCceEeCCchHHcC---CccccCCHHHCC
Confidence            111222344455555555555554432   233344444444

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.8e-28  Score=260.25  Aligned_cols=149  Identities=26%  Similarity=0.270  Sum_probs=126.8

Q ss_pred             ccCCccceeeccC------------CeEEEEEEehHhh---HHHHHHHHHHHHHHh-hcchhhHHH--------------
Q 045449          628 DRFSENNLIGIGN------------GMEVAVKVFHQQY---ERALKSFEDECEVRK-RIRHRNLVK--------------  677 (823)
Q Consensus       628 ~~f~~~~~lg~g~------------~~~vavK~~~~~~---~~~~~~~~~E~~~l~-~l~h~niv~--------------  677 (823)
                      ++|...+.||+|+            |+.||||+++...   ....+.+.+|+.++. .++|||||+              
T Consensus         2 ddy~i~~~iG~G~fg~Vy~~~~~~t~~~vAvK~i~k~~~~~~~~~~~~~~e~~~l~~~~~hp~Iv~~~~~~~~~~~~yiv   81 (320)
T d1xjda_           2 EDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQTKENLFFV   81 (320)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEEECSSEEEEE
T ss_pred             CCeEEeeEEecCCCcEEEEEEECCCCCEEEEEEEchhhccChHHHHHHHHHHHHHHHhCCCCcEEEEEEEEccCCceeEE
Confidence            5678888999886            6779999997543   223456778887765 689999998              


Q ss_pred             --------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCcccc
Q 045449          678 --------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSK  731 (823)
Q Consensus       678 --------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~  731 (823)
                                                +++|++.+|+|+|+.+|+||||||+|||++.++.+||+|||+|+.......  .
T Consensus        82 mEy~~~g~L~~~i~~~~~~~e~~~~~~~~qi~~al~ylH~~~iiHrDikp~NiL~~~~~~~kl~DFG~a~~~~~~~~--~  159 (320)
T d1xjda_          82 MEYLNGGDLMYHIQSCHKFDLSRATFYAAEIILGLQFLHSKGIVYRDLKLDNILLDKDGHIKIADFGMCKENMLGDA--K  159 (320)
T ss_dssp             EECCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTSCEEECCCTTCBCCCCTTC--C
T ss_pred             EeecCCCcHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhCCeeeccCcccceeecCCCceeccccchhhhcccccc--c
Confidence                                      468999999999999999999999999999999999999999987543322  2


Q ss_pred             ccccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCC
Q 045449          732 QTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       732 ~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      .....||+.|+|||++.+..|+.++||||+||++|+|++|+.||.+.
T Consensus       160 ~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvilyemltG~~PF~~~  206 (320)
T d1xjda_         160 TNTFCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQSPFHGQ  206 (320)
T ss_dssp             BCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             ccccCCCCCcCCHHHHcCCCCCchhhhhhhhHHHHHHHhCCCCCCCC
Confidence            34568999999999999999999999999999999999999999764

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.94  E-value=1.5e-25  Score=237.33  Aligned_cols=266  Identities=20%  Similarity=0.212  Sum_probs=184.9

Q ss_pred             CcEEEccCCcccccCCcccccCCCCccEEEeeccccccccCccccCCCCCCeEEeecccccccCCCccCCCcccCccccc
Q 045449          230 LKEISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSITNSSKLSDLELGENLFSGFIPNTIGNLRNLEFGNIA  309 (823)
Q Consensus       230 L~~L~Ls~N~l~g~lp~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~  309 (823)
                      .+.++-+++.++ ++|..+.   +++++|+|++|+|+...+.+|.++++|++|++++|.+....|..|.++++|++|+++
T Consensus        12 ~~~~~C~~~~L~-~lP~~l~---~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~   87 (305)
T d1xkua_          12 LRVVQCSDLGLE-KVPKDLP---PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS   87 (305)
T ss_dssp             TTEEECTTSCCC-SCCCSCC---TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CCEEEecCCCCC-ccCCCCC---CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEeccc
Confidence            455666666676 6666553   467777777777775555567777777777777777777777777777777777777


Q ss_pred             CccccCCCCcccccccccCCCCceEEEeecCCCCccCCccccccccccceEEecCCcce--eccCccccCcccccEEEcc
Q 045449          310 DNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGILPKSIGNFSLSLETILMANCSIS--GNIPQVVGNLSNLLVLELG  387 (823)
Q Consensus       310 ~N~l~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~--~~~p~~~~~l~~L~~L~Ls  387 (823)
                      +|+++..+.        .....++.|++..|.+.+..+..+... ..+..+....|...  ...+..+..+++|+.++++
T Consensus        88 ~n~l~~l~~--------~~~~~l~~L~~~~n~l~~l~~~~~~~~-~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~  158 (305)
T d1xkua_          88 KNQLKELPE--------KMPKTLQELRVHENEITKVRKSVFNGL-NQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIA  158 (305)
T ss_dssp             SSCCSBCCS--------SCCTTCCEEECCSSCCCBBCHHHHTTC-TTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECC
T ss_pred             CCccCcCcc--------chhhhhhhhhccccchhhhhhhhhhcc-ccccccccccccccccCCCccccccccccCccccc
Confidence            777776532        123466777777777776555545444 45666666666433  3445567777788888888


Q ss_pred             cCcCCCCchhcccccCCCCEEEccCCCCCCcchHhhhcCCCCCEEEcccCcCcccccccccCCCCCCeEeccCCcccccc
Q 045449          388 GNNLTGPIPVTFSQLQTLQAFDLTRNKLAGPITDELCHLARLHSLVLQGNKFSGSIPSCLGNLTSVRVLYLGLNIFTSVL  467 (823)
Q Consensus       388 ~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~  467 (823)
                      +|+++ .+|..+  .++|+.|++++|.+++..+..|.+++.+++|++++|.+++..+.++.++++|++|+|++|.|+. +
T Consensus       159 ~n~l~-~l~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~-l  234 (305)
T d1xkua_         159 DTNIT-TIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK-V  234 (305)
T ss_dssp             SSCCC-SCCSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSS-C
T ss_pred             cCCcc-ccCccc--CCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeecccccccc-c
Confidence            88776 344433  5677888888888877777777777888888888888877777777778888888888887775 4


Q ss_pred             chhhhccCCCcEEeccccccccccCcc------ccCCCCCcEEEcccCCCC
Q 045449          468 SSTIWNLKDILFIDVSSNFLDGPLSLD------IGNLKVVIGLDFSRNNLS  512 (823)
Q Consensus       468 p~~~~~l~~L~~LdLs~N~l~g~~p~~------~~~l~~L~~L~ls~N~l~  512 (823)
                      |..+..+++|++|+|++|+|+..-...      ...+..|+.|++++|.++
T Consensus       235 p~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~  285 (305)
T d1xkua_         235 PGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ  285 (305)
T ss_dssp             CTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred             ccccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCc
Confidence            667777888888888888777532222      344567778888887765

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=3.3e-28  Score=257.38  Aligned_cols=146  Identities=25%  Similarity=0.336  Sum_probs=122.5

Q ss_pred             cceeeccC---------------CeEEEEEEehH-hhHHHHHHHHHHHHHHhhcchhhHHH-------------------
Q 045449          633 NNLIGIGN---------------GMEVAVKVFHQ-QYERALKSFEDECEVRKRIRHRNLVK-------------------  677 (823)
Q Consensus       633 ~~~lg~g~---------------~~~vavK~~~~-~~~~~~~~~~~E~~~l~~l~h~niv~-------------------  677 (823)
                      .++||+|+               ...||||+++. ......++|.+|++++++++|||||+                   
T Consensus        32 ~~~iG~G~fg~Vyk~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~~~lv~E~~  111 (311)
T d1r0pa_          32 NEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYM  111 (311)
T ss_dssp             EEEEEEETTEEEEEEEECC----CEEEEEEEECCCCCHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEETTTEEEEEEECC
T ss_pred             ceEEeecCCeEEEEEEEECCCCEEEEEEEEEECcccCHHHHHHHHHHHHHHHhCCCCCEeEEeEEEEecCCceEEEEEEe
Confidence            36788886               12489999864 33555688999999999999999998                   


Q ss_pred             -----------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCcc--ccc
Q 045449          678 -----------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQL--SKQ  732 (823)
Q Consensus       678 -----------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~--~~~  732 (823)
                                             ++.|++.+|+|+|+.+|+||||||+|||+++++.+||+|||+++........  ...
T Consensus       112 ~~g~l~~~~~~~~~~~~~~~~~~i~~qia~gL~~lH~~~iiHrDLK~~NILl~~~~~~kL~DFG~~~~~~~~~~~~~~~~  191 (311)
T d1r0pa_         112 KHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKFLASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNK  191 (311)
T ss_dssp             TTCBHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECTTCCEEECSSGGGCCTTTTTCCCTTCT
T ss_pred             ecCchhhhhccccccchHHHHHHHHHHHHHhhhhhcccCcccCCccHHhEeECCCCCEEEecccchhhccccccccceec
Confidence                                   3568899999999999999999999999999999999999999976543322  223


Q ss_pred             cccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCC
Q 045449          733 TQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       733 ~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      ....||+.|+|||++..+.++.++|||||||++||++++..||...
T Consensus       192 ~~~~gt~~y~aPE~~~~~~~~~ksDI~SfGivl~El~t~~~p~~~~  237 (311)
T d1r0pa_         192 TGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPD  237 (311)
T ss_dssp             TCSSCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCC-
T ss_pred             ccccccccccChHHHhcCCCCChhHhhhhHHHHHHHHHCCCCCCCC
Confidence            3457899999999999999999999999999999999988887654

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=5.4e-28  Score=255.25  Aligned_cols=136  Identities=26%  Similarity=0.311  Sum_probs=113.1

Q ss_pred             CeEEEEEEehHhhHH-----HHHHHHHHHHHHhhcchhhHHH--------------------------------------
Q 045449          641 GMEVAVKVFHQQYER-----ALKSFEDECEVRKRIRHRNLVK--------------------------------------  677 (823)
Q Consensus       641 ~~~vavK~~~~~~~~-----~~~~~~~E~~~l~~l~h~niv~--------------------------------------  677 (823)
                      |+.||||+++.....     ..+.+.+|++++++++|||||+                                      
T Consensus        23 ~~~vAvK~i~~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~~~~~~~~~~~~~ivmE~~~~~~~~~~~~~~~~l~~~~~  102 (299)
T d1ua2a_          23 NQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGHKSNISLVFDFMETDLEVIIKDNSLVLTPSHI  102 (299)
T ss_dssp             CSEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEECCTTCCEEEEECCSEEHHHHHTTCCSSCCSSHH
T ss_pred             CcEEEEEEEehhhhhhhhHHHHHHHHHHHHHHHhCCCCCEeEEEeeeccCCceeehhhhhcchHHhhhhhcccCCCHHHH
Confidence            678999999654321     2357899999999999999998                                      


Q ss_pred             --HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCcccccCCC-cccc
Q 045449          678 --IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKG-RVST  754 (823)
Q Consensus       678 --~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~  754 (823)
                        ++.|++.+|+|+|+.+|+||||||+|||++.++.+||+|||+|+.......  .....+||+.|+|||++... .|+.
T Consensus       103 ~~~~~qil~aL~~lH~~~iiHrDiKp~NIli~~~~~~KL~DFG~a~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~  180 (299)
T d1ua2a_         103 KAYMLMTLQGLEYLHQHWILHRDLKPNNLLLDENGVLKLADFGLAKSFGSPNR--AYTHQVVTRWYRAPELLFGARMYGV  180 (299)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTCCEEECCCGGGSTTTSCCC--CCCCSCCCCTTCCHHHHTTCSCCCH
T ss_pred             HHHHHHHHHHHHHhhccceecccCCcceEEecCCCccccccCccccccCCCcc--cccceecChhhccHHHHccCCCCCh
Confidence              468999999999999999999999999999999999999999987654322  23346799999999988654 5799


Q ss_pred             ccceehhhhhhccccCCCCCcCCC
Q 045449          755 RGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       755 ~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      ++||||+||++|+|++|..||.+.
T Consensus       181 ~~DiwSlGvil~el~~g~~pf~~~  204 (299)
T d1ua2a_         181 GVDMWAVGCILAELLLRVPFLPGD  204 (299)
T ss_dssp             HHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             hhhhhhcchHHHHHHhCcCCCCCC
Confidence            999999999999999999998653

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=2.5e-28  Score=258.48  Aligned_cols=151  Identities=24%  Similarity=0.377  Sum_probs=127.4

Q ss_pred             ccCCccceeeccC-C----------------eEEEEEEehHh-hHHHHHHHHHHHHHHhhcchhhHHH------------
Q 045449          628 DRFSENNLIGIGN-G----------------MEVAVKVFHQQ-YERALKSFEDECEVRKRIRHRNLVK------------  677 (823)
Q Consensus       628 ~~f~~~~~lg~g~-~----------------~~vavK~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~------------  677 (823)
                      ++|...+.||+|+ |                ..||||+++.. .......|.+|++++++++|||||+            
T Consensus        20 ~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~VAvK~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~~~~~~~~~~~~~   99 (308)
T d1p4oa_          20 EKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGVVSQGQPTL   99 (308)
T ss_dssp             GGEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTSCHHHHHHHHHHHHHGGGCCCTTBCCEEEEECSSSSCE
T ss_pred             HHeEEeeEEeeCCCeEEEEEEECCcccCCCCcEEEEEEECcccChHHHHHHHHHHHHHHHcCCCCEeeeeeEEecCCcee
Confidence            5677778899986 2                35899999754 3455568999999999999999998            


Q ss_pred             --------------------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeeccc
Q 045449          678 --------------------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGI  719 (823)
Q Consensus       678 --------------------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGl  719 (823)
                                                            ++.+++.+|+|+|+.+|+||||||+|||+++++++||+|||+
T Consensus       100 lv~e~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ia~gl~~LH~~~ivHrDlk~~NiLld~~~~~Kl~DFGl  179 (308)
T d1p4oa_         100 VIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLNANKFVHRDLAARNCMVAEDFTVKIGDFGM  179 (308)
T ss_dssp             EEEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHHHTTCBCSCCSGGGEEECTTCCEEECCTTC
T ss_pred             EEEeecCCCCHHHHHHhcccccccccccCCCCHHHHHHHHHHHHHHHHHHhhCCeeeceEcCCceeecCCceEEEeeccc
Confidence                                                  356788899999999999999999999999999999999999


Q ss_pred             ccccCCCCccccccccccCCCcCcccccCCCccccccceehhhhhhccccCCC-CCcCCC
Q 045449          720 AKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRS-MTVGET  778 (823)
Q Consensus       720 a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~-~~~~~~  778 (823)
                      |+...............||+.|+|||.+.++.++.++|||||||++||++++. .|+.+.
T Consensus       180 a~~~~~~~~~~~~~~~~~t~~y~aPe~l~~~~~~~~~Dv~S~G~il~El~t~~~~p~~~~  239 (308)
T d1p4oa_         180 TRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGL  239 (308)
T ss_dssp             CCGGGGGGCEEGGGSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTSCCTTTTS
T ss_pred             ceeccCCcceeeccceecccccCCHHHHccCCCCcccccccHHHHHHHHHhCCCCCCCCC
Confidence            99775544444445567999999999999999999999999999999999985 566554

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=5.3e-28  Score=254.96  Aligned_cols=149  Identities=30%  Similarity=0.390  Sum_probs=125.8

Q ss_pred             ccCCccceeeccC------------CeEEEEEEehHhh--HHHHHHHHHHHHHHhhcchhhHHH----------------
Q 045449          628 DRFSENNLIGIGN------------GMEVAVKVFHQQY--ERALKSFEDECEVRKRIRHRNLVK----------------  677 (823)
Q Consensus       628 ~~f~~~~~lg~g~------------~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~----------------  677 (823)
                      ++|...+.||+|+            |+.||||+++...  +...+++.+|++++++++|||||+                
T Consensus         2 d~Y~~~~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~Ei~il~~l~Hp~Iv~~~~~~~~~~~~~iv~e   81 (298)
T d1gz8a_           2 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFE   81 (298)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEC-------CCHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             CCCEeccEEecCcCeEEEEEEECCCCCEEEEEEEehhhcChHHHHHHHHHHHHHHhCCCCcEEEeccccccccceeEEEe
Confidence            5788888999986            6779999996543  223578999999999999999999                


Q ss_pred             -------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccc
Q 045449          678 -------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQ  732 (823)
Q Consensus       678 -------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~  732 (823)
                                               ++.|++.+|+|+|+.+||||||||+|||++.++.+||+|||+|+.......  ..
T Consensus        82 ~~~~~~~~~~~~~~~~~l~e~~~~~~~~qil~~L~yLH~~~IiHrDiKpeNIl~~~~~~~kl~DFG~a~~~~~~~~--~~  159 (298)
T d1gz8a_          82 FLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVR--TY  159 (298)
T ss_dssp             CCSEEHHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTSCEEECSTTHHHHHCCCSB--CT
T ss_pred             ecCCchhhhhhhhcccCCCHHHHHHHHHHHHHHHHHhhcCCEEccccCchheeecccCcceeccCCcceeccCCcc--cc
Confidence                                     478999999999999999999999999999999999999999987654332  23


Q ss_pred             cccccCCCcCcccccCCCc-cccccceehhhhhhccccCCCCCcCCC
Q 045449          733 TQTLATIGYMAPEYGTKGR-VSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       733 ~~~~gt~~y~aPE~~~~~~-~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      ....||+.|+|||+..... ++.++||||+||++|+|++|+.||.+.
T Consensus       160 ~~~~gt~~y~apE~~~~~~~~~~~~DiwSlGvily~m~~G~~Pf~~~  206 (298)
T d1gz8a_         160 THEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGD  206 (298)
T ss_dssp             TCCBCCCTTCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred             eeecccceeeehhhhccccCCCccccccccchhhhHHhhCCCCCCCC
Confidence            4567999999999877665 588999999999999999999999654

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.93  E-value=1.1e-27  Score=248.70  Aligned_cols=149  Identities=26%  Similarity=0.387  Sum_probs=127.2

Q ss_pred             ccCCccceeeccC------------CeEEEEEEehHh---------hHHHHHHHHHHHHHHhhcc-hhhHHH--------
Q 045449          628 DRFSENNLIGIGN------------GMEVAVKVFHQQ---------YERALKSFEDECEVRKRIR-HRNLVK--------  677 (823)
Q Consensus       628 ~~f~~~~~lg~g~------------~~~vavK~~~~~---------~~~~~~~~~~E~~~l~~l~-h~niv~--------  677 (823)
                      ++|...+.||+|+            |+.||||+++..         .+...+.+.+|+.++++++ |||||+        
T Consensus         3 ~~y~~~~~iG~G~~g~V~~~~~~~~~~~~AvK~i~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~   82 (277)
T d1phka_           3 ENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTYETN   82 (277)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEECS
T ss_pred             ccCEEceEEecCcCeEEEEEEECCCCCEEEEEEEecccccchhHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEeecccC
Confidence            5788889999986            678999998542         1344567999999999997 999998        


Q ss_pred             --------------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCC
Q 045449          678 --------------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSG  725 (823)
Q Consensus       678 --------------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~  725 (823)
                                                      +++|++.+|+|+|+.+|+||||||+|||++.++.+||+|||+|+....
T Consensus        83 ~~~~ivmE~~~~g~L~~~l~~~~~l~e~~~~~~~~qi~~al~~lH~~~ivHrDlkp~Nill~~~~~~kl~DFG~a~~~~~  162 (277)
T d1phka_          83 TFFFLVFDLMKKGELFDYLTEKVTLSEKETRKIMRALLEVICALHKLNIVHRDLKPENILLDDDMNIKLTDFGFSCQLDP  162 (277)
T ss_dssp             SEEEEEEECCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCCTTCEECCT
T ss_pred             cceEEEEEcCCCchHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHcCCcccccccceEEEcCCCCeEEccchheeEccC
Confidence                                            478999999999999999999999999999999999999999998754


Q ss_pred             CCccccccccccCCCcCcccccCC------CccccccceehhhhhhccccCCCCCcCCCc
Q 045449          726 EDQLSKQTQTLATIGYMAPEYGTK------GRVSTRGDVCSFGIISGGKETRSMTVGETC  779 (823)
Q Consensus       726 ~~~~~~~~~~~gt~~y~aPE~~~~------~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~~  779 (823)
                      ...   ....+||+.|+|||++.+      ..++.++||||+||++|+|++|+.||.+..
T Consensus       163 ~~~---~~~~~gt~~y~~PE~~~~~~~~~~~~~~~~~DiwslGvilyeml~g~~Pf~~~~  219 (277)
T d1phka_         163 GEK---LREVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFWHRK  219 (277)
T ss_dssp             TCC---BCCCCSCGGGCCHHHHHHHHCTTSCCBCTHHHHHHHHHHHHHHHHSSCSSCCSS
T ss_pred             CCc---eeeeeccCCCCCHHHhhccccccCCCCCchheEcccchhhhhhccCCCCCCCCC
Confidence            322   344679999999998753      346889999999999999999999998764

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=7.3e-28  Score=248.02  Aligned_cols=185  Identities=28%  Similarity=0.293  Sum_probs=131.1

Q ss_pred             ccCCccceeeccC----------CeEEEEEEehHhhHHHHHHHHHHHHHHhhcchhhHHH--------------------
Q 045449          628 DRFSENNLIGIGN----------GMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVK--------------------  677 (823)
Q Consensus       628 ~~f~~~~~lg~g~----------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~--------------------  677 (823)
                      ++|...+.||+|+          |..||||+++...  ..++|.+|++++++++|||||+                    
T Consensus         7 ~~~~~~~~lG~G~fg~Vy~~~~~~~~vAvK~i~~~~--~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~~~lv~ey~~   84 (262)
T d1byga_           7 KELKLLQTIGKGEFGDVMLGDYRGNKVAVKCIKNDA--TAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMA   84 (262)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTEEEEEEECCCCC----HHHHHTHHHHTTCCCTTBCCEEEEECCC--CCEEEECCCT
T ss_pred             HHeEEeEEEecCCCeEEEEEEECCeEEEEEEECcHH--HHHHHHHHHHHHHhCCCCCEeeEEEEEEecCCcEEEEEeccC
Confidence            4566677888886          6779999997553  3468999999999999999998                    


Q ss_pred             -----------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccc
Q 045449          678 -----------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQ  734 (823)
Q Consensus       678 -----------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~  734 (823)
                                             ++.|++++|+|+|+.+|+||||||+||+++.++.+|++|||+++.....     ...
T Consensus        85 ~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~al~ylH~~~ivH~dlkp~Nil~~~~~~~kl~dfg~s~~~~~~-----~~~  159 (262)
T d1byga_          85 KGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGNNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASST-----QDT  159 (262)
T ss_dssp             TEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECTTSCEEECCCCC---------------
T ss_pred             CCCHHHHHHhcCCCCCCHHHHHHHHHHHHhhccccccCceeccccchHhheecCCCCEeecccccceecCCC-----Ccc
Confidence                                   3578899999999999999999999999999999999999999875432     223


Q ss_pred             cccCCCcCcccccCCCccccccceehhhhhhccccC-CCCCcCCCcccccccccccCCcccccccCCCcccccccccccc
Q 045449          735 TLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKET-RSMTVGETCTPVRESKYEVHPATTTIMEHPLPRVGEVMDVDRG  813 (823)
Q Consensus       735 ~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  813 (823)
                      ..+|..|+|||++.++.++.++|||||||++||+++ |+.|+.............. ....+.+....+.+.+++...-.
T Consensus       160 ~~~~~~y~aPE~l~~~~~t~~sDIwSfG~il~el~t~~~~p~~~~~~~~~~~~i~~-~~~~~~~~~~~~~~~~li~~cl~  238 (262)
T d1byga_         160 GKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKDVVPRVEK-GYKMDAPDGCPPAVYEVMKNCWH  238 (262)
T ss_dssp             --CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCGGGHHHHHTT-TCCCCCCTTCCHHHHHHHHHHTC
T ss_pred             ccccccCCChHHHhCCCCChHHHHHhHHHHHHHHHHCCCCCCCCCCHHHHHHHHHc-CCCCCCCccCCHHHHHHHHHHcc
Confidence            468999999999999999999999999999999998 6777765432211111100 01112233344555555555544


Q ss_pred             cccccCC
Q 045449          814 KARIQGK  820 (823)
Q Consensus       814 ~~~~~~~  820 (823)
                      ..+-+||
T Consensus       239 ~dP~~Rp  245 (262)
T d1byga_         239 LDAAMRP  245 (262)
T ss_dssp             SSGGGSC
T ss_pred             cCHhHCc
Confidence            4444443

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=4.5e-28  Score=256.83  Aligned_cols=149  Identities=30%  Similarity=0.344  Sum_probs=124.7

Q ss_pred             hccCCccceeeccC-------------CeEEEEEEehHhh--HHHHHHHHHHHHHHhhc---chhhHHH-----------
Q 045449          627 TDRFSENNLIGIGN-------------GMEVAVKVFHQQY--ERALKSFEDECEVRKRI---RHRNLVK-----------  677 (823)
Q Consensus       627 t~~f~~~~~lg~g~-------------~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l---~h~niv~-----------  677 (823)
                      .++|+..+.||+|+             ++.||||+++...  +.....+.+|+++++.+   +||||++           
T Consensus         6 ~~~Y~i~~~LG~G~fg~V~~a~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~~l~~l~~~~HpnIv~~~~~~~~~~~~   85 (305)
T d1blxa_           6 DQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRTD   85 (305)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEEECS
T ss_pred             cCCEEEEEEEecccCeEEEEEEEECCCCEEEEEEEEehhhccchHHHHHHHHHHHHHHHhhcCCCCcceeeeeecccccc
Confidence            46788888899886             4569999986432  12224567788887766   7999997           


Q ss_pred             -----------------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccc
Q 045449          678 -----------------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKL  722 (823)
Q Consensus       678 -----------------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~  722 (823)
                                                         ++.|++.+|+|+|+.+|+||||||+|||++.++.+||+|||+++.
T Consensus        86 ~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~ivHrDiKp~NILi~~~~~~kl~dfg~~~~  165 (305)
T d1blxa_          86 RETKLTLVFEHVDQDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLHSHRVVHRDLKPQNILVTSSGQIKLADFGLARI  165 (305)
T ss_dssp             SEEEEEEEEECCSCBHHHHHHHSCTTCSCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTCCEEECSCCSCCC
T ss_pred             cCceEEEEEEeccCCchhhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhCCEEecCCCccEEEEcCCCCeeecchhhhhh
Confidence                                               468999999999999999999999999999999999999999986


Q ss_pred             cCCCCccccccccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCC
Q 045449          723 LSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       723 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      ....   ......+||+.|+|||++.+..|+.++||||+||++|+|++|..||.+.
T Consensus       166 ~~~~---~~~~~~~gT~~Y~APE~~~~~~y~~~~DiwSlG~il~ell~g~~pf~~~  218 (305)
T d1blxa_         166 YSFQ---MALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGS  218 (305)
T ss_dssp             CCGG---GGGCCCCCCCTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred             hccc---ccCCCcccChhhcCcchhcCCCCChhehhhchHHHHHHHHHCCCCCCCC
Confidence            5432   2234578999999999999999999999999999999999999999754

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=8e-26  Score=236.77  Aligned_cols=254  Identities=19%  Similarity=0.214  Sum_probs=196.6

Q ss_pred             cEEEeeccccccccCccccCCCCCCeEEeecccccccCCCccCCCcccCcccccCccccCCCCcccccccccCCCCceEE
Q 045449          256 ETLNLGINSFSGTIPSSITNSSKLSDLELGENLFSGFIPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVL  335 (823)
Q Consensus       256 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~l~~L~~L  335 (823)
                      ..++.++++++ .+|..+.  +++++|+|++|+|+.+.+.+|.++++|++|++++|++....     ...+.++..++.+
T Consensus        14 ~~v~c~~~~L~-~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~-----~~~~~~~~~~~~l   85 (284)
T d1ozna_          14 VTTSCPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARID-----AAAFTGLALLEQL   85 (284)
T ss_dssp             CEEECCSSCCS-SCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEEC-----TTTTTTCTTCCEE
T ss_pred             eEEEcCCCCCC-ccCCCCC--CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccc-----ccccccccccccc
Confidence            34577777787 6677664  46899999999999888888999999999999999988773     3456677778887


Q ss_pred             Eee-cCCCCccCCccccccccccceEEecCCcceeccCccccCcccccEEEcccCcCCCCchhcccccCCCCEEEccCCC
Q 045449          336 IVT-GNPLDGILPKSIGNFSLSLETILMANCSISGNIPQVVGNLSNLLVLELGGNNLTGPIPVTFSQLQTLQAFDLTRNK  414 (823)
Q Consensus       336 ~Ls-~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~  414 (823)
                      +.. .|.++...|..|.++ ++|++|++++|.+....+..+....+|+.+++++|++++..+..|..+++|+.|++++|+
T Consensus        86 ~~~~~~~~~~l~~~~~~~l-~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~  164 (284)
T d1ozna_          86 DLSDNAQLRSVDPATFHGL-GRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR  164 (284)
T ss_dssp             ECCSCTTCCCCCTTTTTTC-TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             ccccccccccccchhhccc-ccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCc
Confidence            754 566776667777777 678888888888887777778888888888888888887667778888888888888888


Q ss_pred             CCCcchHhhhcCCCCCEEEcccCcCcccccccccCCCCCCeEeccCCccccccchhhhccCCCcEEeccccccccccCcc
Q 045449          415 LAGPITDELCHLARLHSLVLQGNKFSGSIPSCLGNLTSVRVLYLGLNIFTSVLSSTIWNLKDILFIDVSSNFLDGPLSLD  494 (823)
Q Consensus       415 l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~~p~~  494 (823)
                      +++..+..|.++++|+.+++++|++++..|..|.++++|++|++++|.+++..+..|+.+++|++|++++|.+.+..+..
T Consensus       165 l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~~~  244 (284)
T d1ozna_         165 ISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR  244 (284)
T ss_dssp             CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH
T ss_pred             ccccchhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCCccch
Confidence            88777778888888888888888888888888888888888888888888888888888888888888888887654421


Q ss_pred             ccCCCCCcEEEcccCCCCCCCCCcc
Q 045449          495 IGNLKVVIGLDFSRNNLSGDIPITI  519 (823)
Q Consensus       495 ~~~l~~L~~L~ls~N~l~g~ip~~~  519 (823)
                       .-...++.+....+++.+..|..+
T Consensus       245 -~l~~~l~~~~~~~~~~~C~~p~~l  268 (284)
T d1ozna_         245 -PLWAWLQKFRGSSSEVPCSLPQRL  268 (284)
T ss_dssp             -HHHHHHHHCCSEECCCBEEESGGG
T ss_pred             -HHHHHHHhCcCCCCceEeCCchHH
Confidence             112234455556666666555554

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=3.2e-28  Score=253.08  Aligned_cols=147  Identities=22%  Similarity=0.289  Sum_probs=122.9

Q ss_pred             ccCCccceeeccC------------CeEEEEEEehHhhH------HHHHHHHHHHHHHhhcc--hhhHHH----------
Q 045449          628 DRFSENNLIGIGN------------GMEVAVKVFHQQYE------RALKSFEDECEVRKRIR--HRNLVK----------  677 (823)
Q Consensus       628 ~~f~~~~~lg~g~------------~~~vavK~~~~~~~------~~~~~~~~E~~~l~~l~--h~niv~----------  677 (823)
                      ++|...+.||+|+            |+.||||++.....      ....++.+|++++++++  |||||+          
T Consensus         4 ~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~~~h~nIv~~~~~~~~~~~   83 (273)
T d1xwsa_           4 SQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFERPDS   83 (273)
T ss_dssp             TTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEEEECSSE
T ss_pred             CeEEEeEEEeeCCCeEEEEEEECCCCCEEEEEEEehHHccchhhhhHHHHHHHHHHHHHHhccCCCCccEEEEEEeeCCe
Confidence            5788888999986            67799999875431      11245778999999996  899998          


Q ss_pred             -------------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCC-CCcEEEeecccccccCC
Q 045449          678 -------------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDE-DMVAHISDFGIAKLLSG  725 (823)
Q Consensus       678 -------------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~-~~~~kl~DfGla~~~~~  725 (823)
                                                     ++.|++++|+|+|+++|+||||||+|||++. ++.+||+|||+|+....
T Consensus        84 ~~lv~e~~~~~~~l~~~~~~~~~l~e~~~~~~~~qi~~al~~lH~~~iiHrDiKp~NIll~~~~~~vkl~DFG~a~~~~~  163 (273)
T d1xwsa_          84 FVLILERPEPVQDLFDFITERGALQEELARSFFWQVLEAVRHCHNCGVLHRDIKDENILIDLNRGELKLIDFGSGALLKD  163 (273)
T ss_dssp             EEEEEECCSSEEEHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEETTTTEEEECCCTTCEECCS
T ss_pred             EEEEEEeccCcchHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCCccccCcccceEEecCCCeEEECccccceeccc
Confidence                                           4689999999999999999999999999985 47999999999987543


Q ss_pred             CCccccccccccCCCcCcccccCCCcc-ccccceehhhhhhccccCCCCCcCCC
Q 045449          726 EDQLSKQTQTLATIGYMAPEYGTKGRV-STRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       726 ~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      .    ..+..+||+.|+|||++.+..+ +.++||||+||++|+|++|+.||...
T Consensus       164 ~----~~~~~~GT~~y~aPE~~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~  213 (273)
T d1xwsa_         164 T----VYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHD  213 (273)
T ss_dssp             S----CBCCCCSCGGGSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSH
T ss_pred             c----cccccccCCCcCCHHHHcCCCCCCcccccccceeeehhHhhCCCCCCCc
Confidence            2    2345689999999999887765 67799999999999999999999764

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=3.5e-27  Score=251.97  Aligned_cols=144  Identities=26%  Similarity=0.343  Sum_probs=121.9

Q ss_pred             hccCCcc-ceeeccC------------CeEEEEEEehHhhHHHHHHHHHHHHHHhhc-chhhHHH---------------
Q 045449          627 TDRFSEN-NLIGIGN------------GMEVAVKVFHQQYERALKSFEDECEVRKRI-RHRNLVK---------------  677 (823)
Q Consensus       627 t~~f~~~-~~lg~g~------------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~---------------  677 (823)
                      .++|... ++||.|+            ++.||||+++..     +.+.+|++++.++ +|||||+               
T Consensus        10 ~~~y~i~~~~lG~G~fg~Vy~a~~~~~~~~vAiK~i~~~-----~~~~~E~~~~~~~~~hpnIv~l~~~~~~~~~~~~~~   84 (335)
T d2ozaa1          10 IDDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDC-----PKARREVELHWRASQCPHIVRIVDVYENLYAGRKCL   84 (335)
T ss_dssp             GGTEEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEECS-----HHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEE
T ss_pred             ccCEEEeeEEeeeccCeEEEEEEECCCCCEEEEEEECCc-----HHHHHHHHHHHHhcCCCCCCeEEEEEeecccCCCEE
Confidence            3567654 5689886            677999999654     4577899987665 8999997               


Q ss_pred             -------------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCC---CCcEEEeeccccccc
Q 045449          678 -------------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDE---DMVAHISDFGIAKLL  723 (823)
Q Consensus       678 -------------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~---~~~~kl~DfGla~~~  723 (823)
                                                     ++.|++.+|+|+|+.+|+||||||+|||++.   ++.+||+|||+|+..
T Consensus        85 ~ivmEy~~gg~L~~~i~~~~~~~l~e~~~~~i~~qi~~al~ylH~~~iiHRDiKp~NIll~~~~~~~~~Kl~DFG~a~~~  164 (335)
T d2ozaa1          85 LIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHSINIAHRDVKPENLLYTSKRPNAILKLTDFGFAKET  164 (335)
T ss_dssp             EEEEECCCSEEHHHHHHSCSCCCEEHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEESCSSTTCCEEECCCTTCEEC
T ss_pred             EEEEECCCCCcHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHcCCccccccccccccccccccccccccccceeeec
Confidence                                           4789999999999999999999999999985   467999999999876


Q ss_pred             CCCCccccccccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCC
Q 045449          724 SGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       724 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      .....   ....+||+.|||||++.+..|+.++||||+||++|+|++|..||.+.
T Consensus       165 ~~~~~---~~~~~gt~~y~aPE~~~~~~y~~~~DiwSlGvily~lltg~~Pf~~~  216 (335)
T d2ozaa1         165 TSHNS---LTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSN  216 (335)
T ss_dssp             CCCCC---CCCCSCCCSSCCCCCCCGGGGSHHHHHHHHHHHHHHHTTSSCSCEET
T ss_pred             cCCCc---cccccCCcccCCcHHHcCCCCCHHHHHHhhchhHHHHhhCCCCCCCC
Confidence            54332   34567999999999999999999999999999999999999999654

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1e-27  Score=252.76  Aligned_cols=138  Identities=30%  Similarity=0.354  Sum_probs=118.6

Q ss_pred             eEEEEEEehHhh-HHHHHHHHHHHHHHhhc-chhhHHH------------------------------------------
Q 045449          642 MEVAVKVFHQQY-ERALKSFEDECEVRKRI-RHRNLVK------------------------------------------  677 (823)
Q Consensus       642 ~~vavK~~~~~~-~~~~~~~~~E~~~l~~l-~h~niv~------------------------------------------  677 (823)
                      ..||||+++... .....++.+|+..+.++ +|||||+                                          
T Consensus        46 ~~vAvK~~~~~~~~~~~~~~~~e~~~l~~~~~HpnIv~~~~~~~~~~~~~~v~e~~~~g~l~~~i~~~~~~~~~~~~~~~  125 (299)
T d1fgka_          46 TKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPS  125 (299)
T ss_dssp             EEEEEECCCTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEECCCTTCBHHHHHHTTSCC---------
T ss_pred             eEEEEEEECcccChHHHHHHHHHHHHHHHhcCCCeEEecccccccCCeEEEEEEccCCCcHHHHHHhhcCCccccccccc
Confidence            469999997654 45567899999999999 8999998                                          


Q ss_pred             --------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccccccCCCcCc
Q 045449          678 --------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQTLATIGYMA  743 (823)
Q Consensus       678 --------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~a  743 (823)
                                    ++.|++.+|+|+|+.+||||||||+|||++.++.+||+|||+++...............||+.|+|
T Consensus       126 ~~~~~~l~~~~~~~~~~qi~~al~ylH~~~ivHrDiKp~NiLl~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~a  205 (299)
T d1fgka_         126 HNPEEQLSSKDLVSCAYQVARGMEYLASKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMA  205 (299)
T ss_dssp             ---CCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECTTCCEEECSTTCCCCGGGCCTTCCCTTSCCGGGGSC
T ss_pred             cCccccCCHHHHHHHHHHHHHHHHHhhhCCEEeeeecccceeecCCCCeEeccchhhccccccccccccccCCCChhhhh
Confidence                          246889999999999999999999999999999999999999997765444444455679999999


Q ss_pred             ccccCCCccccccceehhhhhhccccC-CCCCcCCCc
Q 045449          744 PEYGTKGRVSTRGDVCSFGIISGGKET-RSMTVGETC  779 (823)
Q Consensus       744 PE~~~~~~~~~~~Dv~S~Gvv~~~~~~-~~~~~~~~~  779 (823)
                      ||++.++.|+.++|||||||++|++++ |..||.+..
T Consensus       206 PE~l~~~~y~~k~DiwS~Gvvl~ell~~g~~p~~~~~  242 (299)
T d1fgka_         206 PEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVP  242 (299)
T ss_dssp             HHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCC
T ss_pred             hhHhcCCCCCchhhhHHhHHHHHHhccCCCCCCCCCC
Confidence            999999999999999999999999997 677886654

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=2.3e-27  Score=252.01  Aligned_cols=148  Identities=23%  Similarity=0.274  Sum_probs=127.2

Q ss_pred             hccCCccceeeccC------------CeEEEEEEehHhhHHHHHHHHHHHHHHhhcchhhHHH-----------------
Q 045449          627 TDRFSENNLIGIGN------------GMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVK-----------------  677 (823)
Q Consensus       627 t~~f~~~~~lg~g~------------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~-----------------  677 (823)
                      .++|...+.||+|+            ++.||||+++..... ...+.+|++++++++|||||+                 
T Consensus         4 ~~rY~i~~~lG~G~fg~Vy~~~~~~~~~~~AiK~i~~~~~~-~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~lvmE~   82 (321)
T d1tkia_           4 YEKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKGTD-QVLVKKEISILNIARHRNILHLHESFESMEELVMIFEF   82 (321)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCTHH-HHHHHHHHHHHHHSCCTTBCCEEEEEEETTEEEEEECC
T ss_pred             ccceEEEEEEecCCCeEEEEEEECCCCcEEEEEEEcCCccc-HHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEec
Confidence            36788888999986            677999999765432 356889999999999999999                 


Q ss_pred             ------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCC--CcEEEeecccccccCCCCcccc
Q 045449          678 ------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDED--MVAHISDFGIAKLLSGEDQLSK  731 (823)
Q Consensus       678 ------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~--~~~kl~DfGla~~~~~~~~~~~  731 (823)
                                              ++.|++++|+|+|+.+|+||||||+|||++.+  ..+||+|||+++.......   
T Consensus        83 ~~gg~L~~~i~~~~~~l~e~~~~~i~~qi~~al~yLH~~~iiHrDlKp~NIll~~~~~~~ikl~DFG~~~~~~~~~~---  159 (321)
T d1tkia_          83 ISGLDIFERINTSAFELNEREIVSYVHQVCEALQFLHSHNIGHFDIRPENIIYQTRRSSTIKIIEFGQARQLKPGDN---  159 (321)
T ss_dssp             CCCCBHHHHHTSSSCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESSSSCCCEEECCCTTCEECCTTCE---
T ss_pred             CCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccceeecCCCceEEEEcccchhhccccCCc---
Confidence                                    46899999999999999999999999999844  5899999999987654322   


Q ss_pred             ccccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCC
Q 045449          732 QTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       732 ~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      .....||+.|+|||...+..|+.++||||+||++|+|++|..||...
T Consensus       160 ~~~~~~t~~y~ape~~~~~~~~~~~DiWSlGvily~ll~G~~Pf~~~  206 (321)
T d1tkia_         160 FRLLFTAPEYYAPEVHQHDVVSTATDMWSLGTLVYVLLSGINPFLAE  206 (321)
T ss_dssp             EEEEESCGGGSCHHHHTTCEECHHHHHHHHHHHHHHHHHSSCTTCCS
T ss_pred             ccccccccccccchhccCCCCCchhhcccHHHHHHHHHhCCCCCCCC
Confidence            23467899999999999999999999999999999999999999764

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=4.7e-27  Score=252.98  Aligned_cols=152  Identities=27%  Similarity=0.338  Sum_probs=125.9

Q ss_pred             hccCCccceeeccC------------CeEEEEEEehHh-hHHHHHHHHHHHHHHhhcchhhHHH----------------
Q 045449          627 TDRFSENNLIGIGN------------GMEVAVKVFHQQ-YERALKSFEDECEVRKRIRHRNLVK----------------  677 (823)
Q Consensus       627 t~~f~~~~~lg~g~------------~~~vavK~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~----------------  677 (823)
                      +++|...+.||+|+            |+.||||++... .....+++.+|++++++++||||++                
T Consensus         7 ~~rY~~~~~LG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~Ei~il~~l~hp~iv~~~~~~~~~~~~~~~~~   86 (345)
T d1pmea_           7 GPRYTNLSYIGEGAYGMVCSAYDNVNKVRVAIKKISPFEHQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQMKDV   86 (345)
T ss_dssp             CTTEEEEEECC---CCCEEEEEETTTCSEEEEEEECCTTCHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSSTTTCCCE
T ss_pred             CCCeEEEEEEeeccCeEEEEEEECCCCcEEEEEEEehhcChHHHHHHHHHHHHHHHcCCCCCCcEEEEEeeccccccceE
Confidence            45788888899886            677999999643 3455678999999999999999997                


Q ss_pred             ---------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCcc-
Q 045449          678 ---------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQL-  729 (823)
Q Consensus       678 ---------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~-  729 (823)
                                                 ++.|++.+|+|+|+.||+||||||+|||++.++.+||+|||+|+........ 
T Consensus        87 ~l~~~~~~g~L~~~l~~~~l~~~~i~~i~~qil~al~yLH~~~iiHRDIKp~NILl~~~~~~kl~DfG~a~~~~~~~~~~  166 (345)
T d1pmea_          87 YLVTHLMGADLYKLLKTQHLSNDHICYFLYQILRGLKYIHSANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDHT  166 (345)
T ss_dssp             EEEEECCCEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTCEECCGGGCBC
T ss_pred             EEEEeecCCchhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHCCCcCCCCCcceEEECCCCCEEEcccCceeeccCCCccc
Confidence                                       4689999999999999999999999999999999999999999876433221 


Q ss_pred             ccccccccCCCcCcccccCC-CccccccceehhhhhhccccCCCCCcCCC
Q 045449          730 SKQTQTLATIGYMAPEYGTK-GRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       730 ~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      ......+||+.|+|||++.. ..++.++||||+||++++|++|..||...
T Consensus       167 ~~~~~~~gt~~y~aPE~l~~~~~~~~~~DiwSlG~il~eml~g~~pf~~~  216 (345)
T d1pmea_         167 GFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGK  216 (345)
T ss_dssp             CTTCCCCSCGGGCCGGGTTTBCSCSTHHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred             eeeccccccceechHHHhhcCCCCCchhhhhccCceehHHhhCCCCCCCC
Confidence            22345679999999999854 45789999999999999999999998653

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=2.8e-27  Score=252.19  Aligned_cols=152  Identities=26%  Similarity=0.335  Sum_probs=125.0

Q ss_pred             hccCCccceeeccC------------CeEEEEEEehHhh--HHHHHHHHHHHHHHhhcchhhHHH---------------
Q 045449          627 TDRFSENNLIGIGN------------GMEVAVKVFHQQY--ERALKSFEDECEVRKRIRHRNLVK---------------  677 (823)
Q Consensus       627 t~~f~~~~~lg~g~------------~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~---------------  677 (823)
                      .++|+..+.||+|+            |+.||||++....  +...+++.+|++++++++||||++               
T Consensus         9 ~~rY~i~~~LG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~h~nii~~~~~~~~~~~~~~~~   88 (318)
T d3blha1           9 VSKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKASPYNRC   88 (318)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEC----CTTSSCHHHHHHHHHHHHCCCTTBCCEEEEEEC--------
T ss_pred             cCCEEEEEEEecCcCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHHHhcCCCccceEeeeeccccccccc
Confidence            36888888999986            6789999986442  334467899999999999999997               


Q ss_pred             ---------------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccC
Q 045449          678 ---------------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLS  724 (823)
Q Consensus       678 ---------------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~  724 (823)
                                                       ++.|++++|+|+|+.+|+||||||+|||++.++.+|++|||+|+...
T Consensus        89 ~~~~~iv~e~~~~~~~~~~~~~~~~~~~~~~~~i~~qil~~l~~lH~~~ivHrDlKp~NILl~~~~~~kl~dfg~~~~~~  168 (318)
T d3blha1          89 KGSIYLVFDFCEHDLAGLLSNVLVKFTLSEIKRVMQMLLNGLYYIHRNKILHRDMKAANVLITRDGVLKLADFGLARAFS  168 (318)
T ss_dssp             --CEEEEEECCCEEHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTSCEEECCCTTCEECC
T ss_pred             CceEEEEEeccCCCccchhhhcccccccHHHHHHHHHHHHHHHHhccCCEEecCcCchheeecCCCcEEeeecceeeecc
Confidence                                             46799999999999999999999999999999999999999998765


Q ss_pred             CCCcc--ccccccccCCCcCcccccCCC-ccccccceehhhhhhccccCCCCCcCCC
Q 045449          725 GEDQL--SKQTQTLATIGYMAPEYGTKG-RVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       725 ~~~~~--~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      .....  ......+||+.|+|||++.+. .|+.++||||+||+++++++|..||.+.
T Consensus       169 ~~~~~~~~~~~~~~gT~~Y~aPE~~~~~~~~~~k~DiwSlGvil~el~~g~~pf~~~  225 (318)
T d3blha1         169 LAKNSQPNRYTNRVVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGN  225 (318)
T ss_dssp             C-----CCCCCSCCSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred             cccccccccccceecCHHHhhHHHHcCCCCCCcHHHcccCCceeeeHhhCCCCCCCC
Confidence            33221  122345799999999998765 6899999999999999999999999753

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=2.1e-27  Score=251.69  Aligned_cols=148  Identities=25%  Similarity=0.316  Sum_probs=125.6

Q ss_pred             ccCCccceeeccC-----------------CeEEEEEEehHhh-HHHHHHHHHHHHHHhhc-chhhHHH-----------
Q 045449          628 DRFSENNLIGIGN-----------------GMEVAVKVFHQQY-ERALKSFEDECEVRKRI-RHRNLVK-----------  677 (823)
Q Consensus       628 ~~f~~~~~lg~g~-----------------~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l-~h~niv~-----------  677 (823)
                      ++|...+.||.|+                 ++.||||+++... .....+|.+|+.+++++ +|||||+           
T Consensus        23 ~~~~l~~~iG~G~fg~Vy~a~~~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~E~~~~~~l~~HpnIv~~~g~~~~~~~~  102 (311)
T d1t46a_          23 NRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGGPT  102 (311)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSC
T ss_pred             HHeEEeeEEeecCCeEEEEEEEeccccCCCCeEEEEEEECcccCHHHHHHHHHHHHHHHhccCCCCEEEEEEEEeeCCEE
Confidence            5677778888886                 2458999997543 44456899999999999 6999998           


Q ss_pred             -----------------------------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCC
Q 045449          678 -----------------------------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDM  710 (823)
Q Consensus       678 -----------------------------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~  710 (823)
                                                                     ++.|++.+|+|+|++++|||||||+||+++.++
T Consensus       103 ~lvmE~~~~g~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~gl~~LH~~~ivHrDLKp~NIl~~~~~  182 (311)
T d1t46a_         103 LVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLASKNCIHRDLAARNILLTHGR  182 (311)
T ss_dssp             EEEEECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEETTT
T ss_pred             EEEEEcCCCCCHHHHHHhccccccccccccccccccccCCCHHHHHHHHHHHHHHHHHHHhCCeeecccccccccccccC
Confidence                                                           257889999999999999999999999999999


Q ss_pred             cEEEeecccccccCCCCccccccccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCc
Q 045449          711 VAHISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTV  775 (823)
Q Consensus       711 ~~kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~  775 (823)
                      .+|++|||.++..............+||+.|+|||++.++.++.++|||||||++|||+++..|+
T Consensus       183 ~~ki~DfG~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DIwS~G~~l~ellt~g~p~  247 (311)
T d1t46a_         183 ITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSP  247 (311)
T ss_dssp             EEEECCCGGGSCTTSCTTSEECSSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCS
T ss_pred             cccccccchheeccCCCcceEeeecccChHHcCHHHhcCCCCCCcccccchHHHHHHHHhCCCCC
Confidence            99999999999876554444455678999999999999999999999999999999999855443

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.92  E-value=2.1e-27  Score=250.71  Aligned_cols=150  Identities=23%  Similarity=0.250  Sum_probs=124.7

Q ss_pred             ccCCccceeeccC------------CeEEEEEEehHhhHHHHHHHHHHHHHHhhcchhhHHH------------------
Q 045449          628 DRFSENNLIGIGN------------GMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVK------------------  677 (823)
Q Consensus       628 ~~f~~~~~lg~g~------------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~------------------  677 (823)
                      ++|+..+.||+|+            |+.||||++.....  .+++.+|++++++++|+++|.                  
T Consensus         7 ~rY~l~~~iG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~--~~~~~~E~~i~~~l~~~~~i~~~~~~~~~~~~~~ivme~   84 (299)
T d1ckia_           7 NRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTK--HPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVMEL   84 (299)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEESCTT--SCCHHHHHHHHHHSTTSTTCCCEEEEEEETTEEEEEEEC
T ss_pred             CEEEEeEEEeeCCCcEEEEEEECCCCCEEEEEEEchhcc--CHHHHHHHHHHHHccCCCcccEEEEEEecCCEEEEEEEE
Confidence            4688888999986            67899998865432  246889999999998887775                  


Q ss_pred             -----------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCC---CCcEEEeecccccccCCCCcc--
Q 045449          678 -----------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDE---DMVAHISDFGIAKLLSGEDQL--  729 (823)
Q Consensus       678 -----------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~---~~~~kl~DfGla~~~~~~~~~--  729 (823)
                                             ++.|++.+|+|+|+.+|+||||||+|||++.   +..+|++|||+|+........  
T Consensus        85 ~~~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~iiHrDiKp~NIl~~~~~~~~~vkl~DFG~a~~~~~~~~~~~  164 (299)
T d1ckia_          85 LGPSLEDLFNFCSRKFSLKTVLLLADQMISRIEYIHSKNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDARTHQH  164 (299)
T ss_dssp             CCCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECCGGGTTCEEECCCSSCEECBCTTTCCB
T ss_pred             cCCchhhhhhhccCCCcHHHHHHHHHHHHHHHHHHHHCCeeeccCCHhhccccccCCCceeeeeccCcceeccccccccc
Confidence                                   4679999999999999999999999999863   457999999999987543321  


Q ss_pred             ---ccccccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCCc
Q 045449          730 ---SKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGETC  779 (823)
Q Consensus       730 ---~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~~  779 (823)
                         ......+||+.|||||++.+..++.++|||||||+++++.+|+.||....
T Consensus       165 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~~l~el~tg~~P~~~~~  217 (299)
T d1ckia_         165 IPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLK  217 (299)
T ss_dssp             CCCCBCCSCCCCSSSCCHHHHTTBCCCHHHHHHHHHHHHHHHHHSSCTTCCCC
T ss_pred             eeccccCCcCCCccccCHHHHhCCCCCChhhEEecCHHHHHHHhCCCcccccc
Confidence               12345679999999999999999999999999999999999999997643

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.92  E-value=2.2e-27  Score=249.28  Aligned_cols=149  Identities=19%  Similarity=0.220  Sum_probs=123.0

Q ss_pred             ccCCccceeeccC------------CeEEEEEEehHhhHHHHHHHHHHHHHHhhcch-hhHHH-----------------
Q 045449          628 DRFSENNLIGIGN------------GMEVAVKVFHQQYERALKSFEDECEVRKRIRH-RNLVK-----------------  677 (823)
Q Consensus       628 ~~f~~~~~lg~g~------------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h-~niv~-----------------  677 (823)
                      ++|...+.||+|+            |+.||||++.....  ...+.+|++.+.++.| +|++.                 
T Consensus         5 ~~Y~i~~~iG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~--~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~~vme~   82 (293)
T d1csna_           5 VHYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRSD--APQLRDEYRTYKLLAGCTGIPNVYYFGQEGLHNVLVIDL   82 (293)
T ss_dssp             TTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEECCTT--SCCHHHHHHHHHHTTTCTTCCCEEEEEEETTEEEEEEEC
T ss_pred             CceEEEEEEecCCCeEEEEEEECCCCCEEEEEEEccccC--cHHHHHHHHHHHHhcCCCCCCEEEEEeecCCccEEEEEe
Confidence            5788888999986            67799999854422  2457788889998866 77765                 


Q ss_pred             -----------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCC-----CCcEEEeecccccccCCCCc-
Q 045449          678 -----------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDE-----DMVAHISDFGIAKLLSGEDQ-  728 (823)
Q Consensus       678 -----------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~-----~~~~kl~DfGla~~~~~~~~-  728 (823)
                                             ++.|++.+|+|+|+.||+||||||+|||++.     ++.+||+|||+|+....... 
T Consensus        83 ~~~~l~~~~~~~~~~~~~~~~~~i~~q~~~~l~~lH~~giiHrDiKp~Nili~~~~~~~~~~vkl~DFG~a~~~~~~~~~  162 (293)
T d1csna_          83 LGPSLEDLLDLCGRKFSVKTVAMAAKQMLARVQSIHEKSLVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVKFYRDPVTK  162 (293)
T ss_dssp             CCCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHTTTEECCCCCGGGEEECCSSSTTTTCEEECCCTTCEESBCTTTC
T ss_pred             cCCCHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHCCceeccCCccceeecCcccccCCceEEcccceeEEcccCccc
Confidence                                   4678999999999999999999999999974     56899999999997653321 


Q ss_pred             ----cccccccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCC
Q 045449          729 ----LSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       729 ----~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                          .......+||+.|||||++.+..++.++||||+||++|++++|..||.+.
T Consensus       163 ~~~~~~~~~~~~GT~~y~aPE~~~~~~~~~~~DiwSlG~~l~elltg~~Pf~~~  216 (293)
T d1csna_         163 QHIPYREKKNLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGL  216 (293)
T ss_dssp             CBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSC
T ss_pred             cceeecccCceEEchhhcCHHHhcCCCCChHHHHHHhhHHHHHHHhCCCcCCCc
Confidence                11233567999999999999999999999999999999999999999754

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

Probab=99.92  E-value=2e-27  Score=249.15  Aligned_cols=149  Identities=26%  Similarity=0.368  Sum_probs=122.9

Q ss_pred             ccCCccceeeccC-----------CeEEEEEEehHhh--HHHHHHHHHHHHHHhhcchhhHHH-----------------
Q 045449          628 DRFSENNLIGIGN-----------GMEVAVKVFHQQY--ERALKSFEDECEVRKRIRHRNLVK-----------------  677 (823)
Q Consensus       628 ~~f~~~~~lg~g~-----------~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~-----------------  677 (823)
                      ++|..-+.||+|+           |+.||||++....  +...++|.+|+.++++++|||||+                 
T Consensus         2 ~~Y~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~i~~e~   81 (286)
T d1ob3a_           2 EKYHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVIHTKKRLVLVFEH   81 (286)
T ss_dssp             CSEEEEEEEEEETTEEEEEEEETTSCEEEEEEECCSSGGGCCCHHHHHHHHGGGGCCCTTBCCEEEEEECSSCEEEEEEC
T ss_pred             CCceeccEEecCCCcEEEEEEeCCCCEEEEEEEehhhcChHHHHHHHHHHHHHHhCCCCcEEeeeeecccCCceeEEEEe
Confidence            5777788888886           6779999986432  233478999999999999999998                 


Q ss_pred             -----------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccccccc
Q 045449          678 -----------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQTQ  734 (823)
Q Consensus       678 -----------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~~  734 (823)
                                             ++.|++.+|+|+|+.+||||||||+|||++.++.+|++|||.|........  ....
T Consensus        82 ~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~~L~~LH~~~IvHrDiKp~NIll~~~~~~kl~DfG~a~~~~~~~~--~~~~  159 (286)
T d1ob3a_          82 LDQDLKKLLDVCEGGLESVTAKSFLLQLLNGIAYCHDRRVLHRDLKPQNLLINREGELKIADFGLARAFGIPVR--KYTH  159 (286)
T ss_dssp             CSEEHHHHHHTSTTCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTSCEEECCTTHHHHHCC---------
T ss_pred             ehhhhHHHHHhhcCCcchhhhHHHHHHHHHHHHHhccCcEEecCCCCceeeEcCCCCEEecccccceecccCcc--ccce
Confidence                                   478999999999999999999999999999999999999999987654322  2334


Q ss_pred             cccCCCcCcccccCCC-ccccccceehhhhhhccccCCCCCcCCC
Q 045449          735 TLATIGYMAPEYGTKG-RVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       735 ~~gt~~y~aPE~~~~~-~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      ..|++.|+|||.+.+. .++.++||||+||+++++.+|+.||.+.
T Consensus       160 ~~~~~~y~~pE~~~~~~~~~~~~DiwslGv~l~el~~G~~pf~~~  204 (286)
T d1ob3a_         160 EIVTLWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMVNGTPLFPGV  204 (286)
T ss_dssp             --CCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred             ecccchhhhHHHHhCCCCCCcceeehhcCcHHHHHHHCCCCCCCC
Confidence            5789999999988754 4699999999999999999999999754

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=2.8e-27  Score=250.54  Aligned_cols=148  Identities=25%  Similarity=0.339  Sum_probs=118.2

Q ss_pred             ccCCccceeeccC------------C--eEEEEEEehHh-hHHHHHHHHHHHHHHhhc-chhhHHH--------------
Q 045449          628 DRFSENNLIGIGN------------G--MEVAVKVFHQQ-YERALKSFEDECEVRKRI-RHRNLVK--------------  677 (823)
Q Consensus       628 ~~f~~~~~lg~g~------------~--~~vavK~~~~~-~~~~~~~~~~E~~~l~~l-~h~niv~--------------  677 (823)
                      ++|...+.||+|+            |  ..||||++... .....++|.+|+++++++ +|||||+              
T Consensus        10 ~~~~~~~~iG~G~fg~Vy~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~~HpnIv~~~~~~~~~~~~~iV   89 (309)
T d1fvra_          10 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLA   89 (309)
T ss_dssp             GGCEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC------CHHHHHHHHHTTCCCCTTBCCEEEEEEETTEEEEE
T ss_pred             HHcEEEEEEeeCCCcEEEEEEECCCCeEEEEEEEEECcccChHHHHHHHHHHHHHHhccCCCCEeeEEEEEecCCeeEEE
Confidence            5677788899886            2  24788887543 334557899999999999 7999998              


Q ss_pred             ------------------------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEe
Q 045449          678 ------------------------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHIS  715 (823)
Q Consensus       678 ------------------------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~  715 (823)
                                                                ++.|++.+|+|+|+.+|+||||||+|||++.++.+||+
T Consensus        90 ~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~~lH~~~iiHrDlkp~NIL~~~~~~~kl~  169 (309)
T d1fvra_          90 IEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQKQFIHRDLAARNILVGENYVAKIA  169 (309)
T ss_dssp             ECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECGGGCEEEC
T ss_pred             EEecCCCcHHHHHhhccccccchhhhccccccCCCCHHHHHHHHHHHHHHHHhhhcCCccccccccceEEEcCCCceEEc
Confidence                                                      24688999999999999999999999999999999999


Q ss_pred             ecccccccCCCCccccccccccCCCcCcccccCCCccccccceehhhhhhccccCCCC-CcCCC
Q 045449          716 DFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSM-TVGET  778 (823)
Q Consensus       716 DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~-~~~~~  778 (823)
                      |||+|+......   ......||..|+|||.+.++.|+.++|||||||++|||+++.. ||.+.
T Consensus       170 DfG~a~~~~~~~---~~~~~~gt~~y~aPE~l~~~~~~~~sDvwSfGvil~ell~~~~~p~~~~  230 (309)
T d1fvra_         170 DFGLSRGQEVYV---KKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGM  230 (309)
T ss_dssp             CTTCEESSCEEC---CC----CCTTTCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTC
T ss_pred             cccccccccccc---cccceecCCcccchHHhccCCCCccceeehhHHHHHHHHhcCCCCCCCC
Confidence            999998653222   1234568999999999999999999999999999999999765 56543

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.9e-26  Score=248.58  Aligned_cols=147  Identities=30%  Similarity=0.370  Sum_probs=123.8

Q ss_pred             hccCCccceeeccC------------CeEEEEEEehHh--hHHHHHHHHHHHHHHhhcchhhHHH---------------
Q 045449          627 TDRFSENNLIGIGN------------GMEVAVKVFHQQ--YERALKSFEDECEVRKRIRHRNLVK---------------  677 (823)
Q Consensus       627 t~~f~~~~~lg~g~------------~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~---------------  677 (823)
                      .++|...+.||+|+            |+.||||+++..  .+...+.+.+|++++++++|||||+               
T Consensus        17 ~~~Y~~i~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~hpniv~l~~~~~~~~~~~~~~   96 (346)
T d1cm8a_          17 RAVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLDDFT   96 (346)
T ss_dssp             BSSEEEEEEC------CEEEEEETTTCCEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSSTTTCC
T ss_pred             CCcEEEEEEEecCCCeEEEEEEECCCCCEEEEEEEchhhcChHHHHHHHHHHHHHHhcCCCCeeEEEEEeccCccccccc
Confidence            46788888888886            677999999743  2455678999999999999999997               


Q ss_pred             -----------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCc
Q 045449          678 -----------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQ  728 (823)
Q Consensus       678 -----------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~  728 (823)
                                                   ++.|++.+|+|+|+.||+||||||+|||++.++.+|++|||+|+.....  
T Consensus        97 ~~~lv~e~~~~~l~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~~IiHrDiKp~NIL~~~~~~~kl~Dfg~a~~~~~~--  174 (346)
T d1cm8a_          97 DFYLVMPFMGTDLGKLMKHEKLGEDRIQFLVYQMLKGLRYIHAAGIIHRDLKPGNLAVNEDCELKILDFGLARQADSE--  174 (346)
T ss_dssp             CCEEEEECCSEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTCEECCSS--
T ss_pred             eEEEEEecccccHHHHHHhccccHHHHHHHHHHHHHHHHHHHhCCCcccccCcchhhcccccccccccccceeccCCc--
Confidence                                         4679999999999999999999999999999999999999999876432  


Q ss_pred             cccccccccCCCcCcccccCCC-ccccccceehhhhhhccccCCCCCcCCC
Q 045449          729 LSKQTQTLATIGYMAPEYGTKG-RVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       729 ~~~~~~~~gt~~y~aPE~~~~~-~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                         .+..+||+.|+|||++.+. .++.++||||+||+++++++|..||.+.
T Consensus       175 ---~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlGvil~ell~g~~pf~~~  222 (346)
T d1cm8a_         175 ---MTGYVVTRWYRAPEVILNWMRYTQTVDIWSVGCIMAEMITGKTLFKGS  222 (346)
T ss_dssp             ---CCSSCSCGGGCCTHHHHTTTCCCTTHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             ---cccccccccccCHHHHcCCCCCCccchhhcchHHHHHHHHCcCCCCCC
Confidence               2456799999999988764 5689999999999999999999999664

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=3.8e-26  Score=240.75  Aligned_cols=149  Identities=28%  Similarity=0.332  Sum_probs=110.3

Q ss_pred             ccCCccceeeccC----------CeEEEEEEehHhhHHHHHHHHHHHHHHhhcchhhHHH--------------------
Q 045449          628 DRFSENNLIGIGN----------GMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVK--------------------  677 (823)
Q Consensus       628 ~~f~~~~~lg~g~----------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~--------------------  677 (823)
                      ++|...+.||+|+          |..||||+++..... ...++.|+..+.+++|||||+                    
T Consensus         3 ~~~~l~~~iG~G~fg~Vy~~~~~g~~vAvK~~~~~~~~-~~~~e~ei~~~~~~~HpnIv~~~~~~~~~~~~~~~~~lv~E   81 (303)
T d1vjya_           3 RTIVLQESIGKGRFGEVWRGKWRGEEVAVKIFSSREER-SWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVSD   81 (303)
T ss_dssp             GGEEEEEEEECCSSSEEEEEEETTEEEEEEEECGGGHH-HHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEEEE
T ss_pred             cEEEEEEEEeeCCCeEEEEEEECCEEEEEEEECccchh-HHHHHHHHHHHhhCCCCcCcceEEEEEeCCCcceEEEEEEe
Confidence            3455567788886          677999999755432 123345566667889999999                    


Q ss_pred             -----------------------HHHHHHHHhhhcC--------CCCEEeccCCCCCEEeCCCCcEEEeecccccccCCC
Q 045449          678 -----------------------IISSSLEYLHFGH--------SIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGE  726 (823)
Q Consensus       678 -----------------------~~~~~l~~L~~~h--------~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~  726 (823)
                                             ++.+++.+|+|+|        +++|+||||||+|||++.++.+||+|||+++.....
T Consensus        82 y~~~g~L~~~l~~~~l~~~~~~~~~~~ia~gl~~lH~~~~~~~~~~~IvHrDlKp~NILl~~~~~~Kl~DFGl~~~~~~~  161 (303)
T d1vjya_          82 YHEHGSLFDYLNRYTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSA  161 (303)
T ss_dssp             CCTTCBHHHHHHHCCBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCEEECSCCCGGGEEECTTSCEEECCCTTCEEEETT
T ss_pred             cccCCCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCCeeccccCccceEEcCCCCeEEEecCccccccCC
Confidence                                   1234444444444        579999999999999999999999999999987544


Q ss_pred             Cccc--cccccccCCCcCcccccCCC------ccccccceehhhhhhccccCCCCCcCC
Q 045449          727 DQLS--KQTQTLATIGYMAPEYGTKG------RVSTRGDVCSFGIISGGKETRSMTVGE  777 (823)
Q Consensus       727 ~~~~--~~~~~~gt~~y~aPE~~~~~------~~~~~~Dv~S~Gvv~~~~~~~~~~~~~  777 (823)
                      ....  .....+||+.|+|||++.+.      .++.++|||||||++||+++|..|+..
T Consensus       162 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~k~Di~S~Gvvl~el~tg~~~~~~  220 (303)
T d1vjya_         162 TDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGI  220 (303)
T ss_dssp             TTEECC----CCSCGGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHHTBCBTTB
T ss_pred             CcceeccccceecccCcCChhhccccccccCCCcCcchhhhhhHHHHHHHhhCCCCCCc
Confidence            3221  23356799999999997654      368899999999999999999877643

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=2.3e-26  Score=248.07  Aligned_cols=143  Identities=28%  Similarity=0.372  Sum_probs=121.0

Q ss_pred             cCCccceeeccC------------CeEEEEEEehHhhHHHHHHHHHHHHHHhhcchhhHHH-------------------
Q 045449          629 RFSENNLIGIGN------------GMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLVK-------------------  677 (823)
Q Consensus       629 ~f~~~~~lg~g~------------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~-------------------  677 (823)
                      +|...++||+|+            |+.||||++....    +.+.+|++++++++|||||+                   
T Consensus        21 ~Y~~~k~LG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~----~~~~~Ei~il~~l~h~niv~~~~~~~~~~~~~~~~~~~l   96 (350)
T d1q5ka_          21 SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDK----RFKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNL   96 (350)
T ss_dssp             EEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCS----SSCCHHHHHHHHCCCTTBCCEEEEEEEC--CCSCCEEEE
T ss_pred             CcEeeeEEeeCcCeEEEEEEECCCCCEEEEEEECccc----hHHHHHHHHHHhcCCCCCCcEEEEEEecCccCCceEEEE
Confidence            566778899986            6779999996543    23457999999999999998                   


Q ss_pred             ------------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCC-cEEEeecccccccCCC
Q 045449          678 ------------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDM-VAHISDFGIAKLLSGE  726 (823)
Q Consensus       678 ------------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~-~~kl~DfGla~~~~~~  726 (823)
                                                    ++.|++.+|+|+|++||+||||||+|||++.++ .+||+|||+|+.....
T Consensus        97 v~Ey~~~~~~~~l~~~~~~~~~l~~~~~~~i~~qil~aL~yLH~~~IiHrDiKp~NILl~~~~~~~kl~DFG~a~~~~~~  176 (350)
T d1q5ka_          97 VLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSFGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRG  176 (350)
T ss_dssp             EEECCSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHTTTEECCCCCGGGEEECTTTCCEEECCCTTCEECCTT
T ss_pred             EEeccCCccHHHHHhhhhccCCCCHHHHHHHHHHHHHHHHHHHhcCCcccCCCcceEEEecCCCceeEecccchhhccCC
Confidence                                          367999999999999999999999999999775 8999999999876543


Q ss_pred             CccccccccccCCCcCcccccCC-CccccccceehhhhhhccccCCCCCcCCC
Q 045449          727 DQLSKQTQTLATIGYMAPEYGTK-GRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       727 ~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      ..   ....+||+.|+|||.+.+ ..|+.++||||+||++|++++|..||...
T Consensus       177 ~~---~~~~~gt~~y~aPE~~~~~~~~~~~~DIwSlG~il~el~~g~~pf~~~  226 (350)
T d1q5ka_         177 EP---NVSYICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGD  226 (350)
T ss_dssp             SC---CCSCCSCTTSCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHTSCSSCCS
T ss_pred             cc---cccccccccccChHHhhcccCCCcceeecccceEEEehhhCCCCCCCC
Confidence            32   234679999999998765 56899999999999999999999998654

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=9.9e-26  Score=237.12  Aligned_cols=147  Identities=25%  Similarity=0.315  Sum_probs=125.1

Q ss_pred             ccCCccceeeccC------------CeEEEEEEehHhh--HHHHHHHHHHHHHHhhcchhhHHH----------------
Q 045449          628 DRFSENNLIGIGN------------GMEVAVKVFHQQY--ERALKSFEDECEVRKRIRHRNLVK----------------  677 (823)
Q Consensus       628 ~~f~~~~~lg~g~------------~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~----------------  677 (823)
                      ++|+..+.||+|+            ++.||||+++...  +...+++.+|++++++++|||||+                
T Consensus         2 ~ry~~i~~LG~G~fg~V~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~h~niv~~~~~~~~~~~~~iv~~   81 (292)
T d1unla_           2 QKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLVFE   81 (292)
T ss_dssp             CSEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEESSCSSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEE
T ss_pred             CCCEeeeEEecCcCeEEEEEEECCCCcEEEEEEEehhhCChHHHHHHHHHHHHHHhcCcCCEEeeccccccccceeEEee
Confidence            5788888999886            6679999985432  345678999999999999999998                


Q ss_pred             ------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCcccccc
Q 045449          678 ------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQT  733 (823)
Q Consensus       678 ------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~  733 (823)
                                              ++.|++++|+|+|+.+|+||||||+|||++.++.+|++|||.|+.......  ...
T Consensus        82 ~~~~~~l~~~~~~~~~~~~~~~~~~~~q~~~aL~~lH~~~IvHrDiKP~NIli~~~~~~kl~DFG~a~~~~~~~~--~~~  159 (292)
T d1unla_          82 FCDQDLKKYFDSCNGDLDPEIVKSFLFQLLKGLGFCHSRNVLHRDLKPQNLLINRNGELKLANFGLARAFGIPVR--CYS  159 (292)
T ss_dssp             CCSEEHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTCCEEECCCTTCEECCSCCS--CCC
T ss_pred             eccccccccccccccccchhHHHHHHHHHHHHHHHhhcCCEeeecccCcccccccCCceeeeecchhhcccCCCc--cce
Confidence                                    478999999999999999999999999999999999999999998654332  223


Q ss_pred             ccccCCCcCcccccCCCc-cccccceehhhhhhccccCCCCCcC
Q 045449          734 QTLATIGYMAPEYGTKGR-VSTRGDVCSFGIISGGKETRSMTVG  776 (823)
Q Consensus       734 ~~~gt~~y~aPE~~~~~~-~~~~~Dv~S~Gvv~~~~~~~~~~~~  776 (823)
                      ...+++.|+|||++.... ++.++||||+||++++|++|..||.
T Consensus       160 ~~~~~~~~~~pe~~~~~~~~~~~~DiwSlG~il~ell~g~~p~~  203 (292)
T d1unla_         160 AEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLF  203 (292)
T ss_dssp             SCCSCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHTTTSCCSC
T ss_pred             eeccccchhhhhHhccCCCCCchhhccccchHHHHHhhCCCCCC
Confidence            456789999999887665 6899999999999999999999864

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=8.3e-27  Score=247.81  Aligned_cols=150  Identities=25%  Similarity=0.338  Sum_probs=124.3

Q ss_pred             ccCCccceeeccC---------------CeEEEEEEehHhh----HHHHHHHHHHHHHHhhcch-hhHHH----------
Q 045449          628 DRFSENNLIGIGN---------------GMEVAVKVFHQQY----ERALKSFEDECEVRKRIRH-RNLVK----------  677 (823)
Q Consensus       628 ~~f~~~~~lg~g~---------------~~~vavK~~~~~~----~~~~~~~~~E~~~l~~l~h-~niv~----------  677 (823)
                      ++|+..+.||+|+               |+.||||+++...    ....+.+.+|++++++++| |||++          
T Consensus        24 ~~y~~~~~IG~G~fg~Vy~~~~~~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~~E~~il~~l~h~pnIv~~~~~~~~~~~  103 (322)
T d1vzoa_          24 ENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTETK  103 (322)
T ss_dssp             GGEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEEEETTE
T ss_pred             hceEEEEEEecCCCeEEEEEEECccCCCCcEEEEEEEehHHhccchHHHHHHHHHHHHHHhccCCCeEEEeeeeeccCCc
Confidence            6688889999886               4669999986432    2234678899999999977 89998          


Q ss_pred             ------------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCC
Q 045449          678 ------------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGED  727 (823)
Q Consensus       678 ------------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~  727 (823)
                                                    +++|++.+|+|+|+.+|+||||||+|||++.++.+||+|||+|+.+....
T Consensus       104 ~~~v~e~~~~~~L~~~i~~~~~~~e~~~~~~~~Qi~~al~~lH~~~ivHrDiKp~Nill~~~~~vkL~DFG~a~~~~~~~  183 (322)
T d1vzoa_         104 LHLILDYINGGELFTHLSQRERFTEHEVQIYVGEIVLALEHLHKLGIIYRDIKLENILLDSNGHVVLTDFGLSKEFVADE  183 (322)
T ss_dssp             EEEEECCCCSCBHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTSCEEESCSSEEEECCGGG
T ss_pred             eeeeeecccccHHHHHHHhcccccHHHHHHHHHHHHHHHHHhhcCCEEeccCCccceeecCCCCEEEeeccchhhhcccc
Confidence                                          46899999999999999999999999999999999999999998764333


Q ss_pred             ccccccccccCCCcCcccccCCC--ccccccceehhhhhhccccCCCCCcCCC
Q 045449          728 QLSKQTQTLATIGYMAPEYGTKG--RVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       728 ~~~~~~~~~gt~~y~aPE~~~~~--~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      . .......|++.|+|||.+.+.  .++.++||||+||++|+|++|..||...
T Consensus       184 ~-~~~~~~~g~~~~~~pe~~~~~~~~~~~ksDIWSlG~iLyelltG~~PF~~~  235 (322)
T d1vzoa_         184 T-ERAYDFCGTIEYMAPDIVRGGDSGHDKAVDWWSLGVLMYELLTGASPFTVD  235 (322)
T ss_dssp             G-GGGCGGGSCCTTCCHHHHTTCC---CTHHHHHHHHHHHHHHHHSSCTTSCT
T ss_pred             c-ccccccccccccchhHHhhcCCcCCCchhhhHHHHHHHHHHHhCCCCCCCC
Confidence            2 223456799999999998764  4688999999999999999999999664

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

Probab=99.90  E-value=2.2e-25  Score=238.32  Aligned_cols=145  Identities=22%  Similarity=0.328  Sum_probs=123.8

Q ss_pred             ccCCccceeeccC------------CeEEEEEEehHhhHHHHHHHHHHHHHHhhcc-hhhHHH-----------------
Q 045449          628 DRFSENNLIGIGN------------GMEVAVKVFHQQYERALKSFEDECEVRKRIR-HRNLVK-----------------  677 (823)
Q Consensus       628 ~~f~~~~~lg~g~------------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~-----------------  677 (823)
                      ++|...+.||.|+            |+.||||+++...   .+++.+|+++++++. ||||++                 
T Consensus        35 d~y~i~~~LG~G~fg~V~~a~~~~~~~~vAiK~i~~~~---~~~~~~Ei~il~~l~~hpnIv~~~~~~~~~~~~~~~~v~  111 (328)
T d3bqca1          35 DDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPVK---KKKIKREIKILENLRGGPNIITLADIVKDPVSRTPALVF  111 (328)
T ss_dssp             GGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSSC---HHHHHHHHHHHHHHTTSTTBCCEEEEEECTTTCSEEEEE
T ss_pred             cCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEECHHH---HHHHHHHHHHHHhccCCCCCcEEEEEEEecCCCceeEEE
Confidence            5788889999986            6779999997543   257889999999995 999998                 


Q ss_pred             ----------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCC-cEEEeecccccccCCCCccccccc
Q 045449          678 ----------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDM-VAHISDFGIAKLLSGEDQLSKQTQ  734 (823)
Q Consensus       678 ----------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~-~~kl~DfGla~~~~~~~~~~~~~~  734 (823)
                                            ++.|++.+|.|+|++||+||||||+|||++.++ .+||+|||+|+.......   ...
T Consensus       112 e~~~~~~L~~~~~~l~e~~i~~i~~qil~aL~~LH~~gIvHrDiKp~NILi~~~~~~vkl~DFG~a~~~~~~~~---~~~  188 (328)
T d3bqca1         112 EHVNNTDFKQLYQTLTDYDIRFYMYEILKALDYCHSMGIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPGQE---YNV  188 (328)
T ss_dssp             ECCCSCBGGGTTTSCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEETTTTEEEECCGGGCEECCTTCC---CCS
T ss_pred             eecCCCcHHHHhcCCCHHHHHHHHHHHHHHHHHHhhcccccccccccceEEcCCCCeeeecccccceeccCCCc---ccc
Confidence                                  478999999999999999999999999998654 699999999987654332   345


Q ss_pred             cccCCCcCcccccCCC-ccccccceehhhhhhccccCCCCCcCCC
Q 045449          735 TLATIGYMAPEYGTKG-RVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       735 ~~gt~~y~aPE~~~~~-~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      .+||+.|+|||.+.+. .++.++||||+||+++++.+|..||...
T Consensus       189 ~~~t~~y~aPE~~~~~~~~~~~~DiwslG~~l~e~~~g~~pf~~~  233 (328)
T d3bqca1         189 RVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHG  233 (328)
T ss_dssp             CCSCGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHTCSSSSCC
T ss_pred             cccCccccCcccccCCCCCCcccchhhhhhhhHHhccCCCCCCCC
Confidence            6799999999997765 4799999999999999999999998654

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=2.7e-25  Score=240.10  Aligned_cols=148  Identities=28%  Similarity=0.341  Sum_probs=119.9

Q ss_pred             ccCCccceeeccC------------CeEEEEEEehHhh--HHHHHHHHHHHHHHhhcchhhHHH----------------
Q 045449          628 DRFSENNLIGIGN------------GMEVAVKVFHQQY--ERALKSFEDECEVRKRIRHRNLVK----------------  677 (823)
Q Consensus       628 ~~f~~~~~lg~g~------------~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~----------------  677 (823)
                      ++|...+.||+|+            |+.||||++....  ....+++.+|+.++++++|||||+                
T Consensus        17 ~~Y~i~~~LG~G~fg~V~~~~d~~t~~~vAvK~i~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~~~~~f~~~~~~~~~~~   96 (355)
T d2b1pa1          17 KRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEFQD   96 (355)
T ss_dssp             TTEEEEEECSCC--CEEEEEEETTTTEEEEEEEEESTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCCSTTTCCE
T ss_pred             CCeEEEEEeecCcCeEEEEEEECCCCCEEEEEEEChhhcCHHHHHHHHHHHHHHHhcCCCCeeEEEEEEecccccccCce
Confidence            5788888999986            6789999996442  445578999999999999999998                


Q ss_pred             ---------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCccc
Q 045449          678 ---------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLS  730 (823)
Q Consensus       678 ---------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~  730 (823)
                                                 ++.|++.+|+|+|+.||+||||||+|||++.++.+|++|||+++......   
T Consensus        97 ~~iv~Ey~~~~l~~~~~~~~~~~~i~~~~~qil~gl~~LH~~giiHrDlKP~Nil~~~~~~~kl~df~~~~~~~~~~---  173 (355)
T d2b1pa1          97 VYLVMELMDANLCQVIQMELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSF---  173 (355)
T ss_dssp             EEEEEECCSEEHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTCCEEECCCCC-----------
T ss_pred             eEEEEeccchHHHHhhhcCCCHHHHHHHHHHHHHHHHHhhhcccccccCCccccccccccceeeechhhhhcccccc---
Confidence                                       46899999999999999999999999999999999999999988754432   


Q ss_pred             cccccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCCC
Q 045449          731 KQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       731 ~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                      .....+||+.|+|||++.+..++.++||||+||+++++.+|..||.+.
T Consensus       174 ~~~~~~~t~~y~aPE~l~~~~~~~~~DiwSlG~~l~ell~g~~pF~~~  221 (355)
T d2b1pa1         174 MMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGR  221 (355)
T ss_dssp             -------CCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             ccccccccccccChhhhcCCCCCCCcccccccchHHHHhhCCCCCCCC
Confidence            234567999999999999999999999999999999999999998643

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=3.1e-25  Score=239.40  Aligned_cols=147  Identities=32%  Similarity=0.394  Sum_probs=122.6

Q ss_pred             hccCCccceeeccC------------CeEEEEEEehHhh--HHHHHHHHHHHHHHhhcchhhHHH---------------
Q 045449          627 TDRFSENNLIGIGN------------GMEVAVKVFHQQY--ERALKSFEDECEVRKRIRHRNLVK---------------  677 (823)
Q Consensus       627 t~~f~~~~~lg~g~------------~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~---------------  677 (823)
                      +++|+..+.||+|+            |+.||||++....  ....+++.+|++++++++|||||+               
T Consensus        17 ~~rY~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~h~~iv~~~~~~~~~~~~~~~~   96 (348)
T d2gfsa1          17 PERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFN   96 (348)
T ss_dssp             ETTEEEEEECGGGTTSSEEEEEETTTTEEEEEEECSCTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSTTTCC
T ss_pred             CCCeEEEEEEecCCCeEEEEEEECCCCCEEEEEEECchhcChHHHHHHHHHHHHHHhcCCCCeeeEEEEEeeccccccCc
Confidence            56788888999986            6789999997443  344568999999999999999997               


Q ss_pred             -----------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCc
Q 045449          678 -----------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQ  728 (823)
Q Consensus       678 -----------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~  728 (823)
                                                   ++.|++.+|+|+|+.||+||||||+|||++.++.+|++|||+|.....   
T Consensus        97 ~~~i~~~~~gg~L~~~~~~~~l~e~~~~~i~~qil~aL~~LH~~giiHrDiKp~NILi~~~~~~kl~dfg~a~~~~~---  173 (348)
T d2gfsa1          97 DVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDD---  173 (348)
T ss_dssp             CCEEEEECCSEEHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTCCEEECCC----CCTG---
T ss_pred             eEEEEEeecCCchhhhcccccccHHHHHHHHHHHHHHHHHHHhCCCcccccCCccccccccccccccccchhcccCc---
Confidence                                         468999999999999999999999999999999999999999976532   


Q ss_pred             cccccccccCCCcCcccccCCCc-cccccceehhhhhhccccCCCCCcCCC
Q 045449          729 LSKQTQTLATIGYMAPEYGTKGR-VSTRGDVCSFGIISGGKETRSMTVGET  778 (823)
Q Consensus       729 ~~~~~~~~gt~~y~aPE~~~~~~-~~~~~Dv~S~Gvv~~~~~~~~~~~~~~  778 (823)
                        ......||+.|+|||+..+.. ++.++||||+||++|++++|..||.+.
T Consensus       174 --~~~~~~g~~~y~apE~~~~~~~~~~~~DiwSlGv~l~~ll~g~~pF~~~  222 (348)
T d2gfsa1         174 --EMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGT  222 (348)
T ss_dssp             --GGSSSCHHHHTSCHHHHTTCSCCCTTHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred             --ccccccccccccCchhhcCCccCCcccchhhhhHHHHHHHhCCCCCCCC
Confidence              234467999999999876654 689999999999999999999998653

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=4.1e-23  Score=213.57  Aligned_cols=202  Identities=20%  Similarity=0.209  Sum_probs=136.3

Q ss_pred             CCCCCcEEEccCCcccccCCcccccCCCCccEEEeeccccccccCccccCCCCCCeEEeecccccccCCCccCCCcccCc
Q 045449          226 NMSALKEISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSITNSSKLSDLELGENLFSGFIPNTIGNLRNLEF  305 (823)
Q Consensus       226 ~l~~L~~L~Ls~N~l~g~lp~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~  305 (823)
                      +...+.+++.+++.|+ .+|..+.   ++|++|+|++|+|++..+.+|.++++|++|+|++|+|+.. | .++.+++|++
T Consensus         8 ~~~~~~~v~C~~~~L~-~iP~~lp---~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l-~-~~~~l~~L~~   81 (266)
T d1p9ag_           8 KVASHLEVNCDKRNLT-ALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-Q-VDGTLPVLGT   81 (266)
T ss_dssp             CSTTCCEEECTTSCCS-SCCSCCC---TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-E-CCSCCTTCCE
T ss_pred             ccCCCeEEEccCCCCC-eeCcCcC---cCCCEEECcCCcCCCcCHHHhhcccccccccccccccccc-c-cccccccccc
Confidence            4556666777777777 6776553   4677777777777766666777777777777777777643 2 2455666666


Q ss_pred             ccccCccccCCCCcccccccccCCCCceEEEeecCCCCccCCccccccccccceEEecCCcceeccCccccCcccccEEE
Q 045449          306 GNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGILPKSIGNFSLSLETILMANCSISGNIPQVVGNLSNLLVLE  385 (823)
Q Consensus       306 L~L~~N~l~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~  385 (823)
                      |+|++|+++..      +..+.+++                         +|++|++++|.+.+..+..+..+.++++|+
T Consensus        82 L~Ls~N~l~~~------~~~~~~l~-------------------------~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~  130 (266)
T d1p9ag_          82 LDLSHNQLQSL------PLLGQTLP-------------------------ALTVLDVSFNRLTSLPLGALRGLGELQELY  130 (266)
T ss_dssp             EECCSSCCSSC------CCCTTTCT-------------------------TCCEEECCSSCCCCCCSSTTTTCTTCCEEE
T ss_pred             ccccccccccc------cccccccc-------------------------ccccccccccccceeecccccccccccccc
Confidence            66666665543      12333444                         455555555555555555666667777777


Q ss_pred             cccCcCCCCchhcccccCCCCEEEccCCCCCCcchHhhhcCCCCCEEEcccCcCcccccccccCCCCCCeEeccCCcccc
Q 045449          386 LGGNNLTGPIPVTFSQLQTLQAFDLTRNKLAGPITDELCHLARLHSLVLQGNKFSGSIPSCLGNLTSVRVLYLGLNIFTS  465 (823)
Q Consensus       386 Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~  465 (823)
                      +++|.+++..+..+..+++|+.|++++|+|++..+..|..+++|++|+|++|+|+ .+|..+..+++|+.|+|++|.+.-
T Consensus       131 l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~C  209 (266)
T d1p9ag_         131 LKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC  209 (266)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred             ccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCCC
Confidence            7777777666666677777777777777777776667777777777777777777 677777777788888888887653

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=5.8e-23  Score=212.46  Aligned_cols=202  Identities=20%  Similarity=0.191  Sum_probs=163.8

Q ss_pred             CCCccEEEeeccccccccCccccCCCCCCeEEeecccccccCCCccCCCcccCcccccCccccCCCCcccccccccCCCC
Q 045449          252 LPNVETLNLGINSFSGTIPSSITNSSKLSDLELGENLFSGFIPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKK  331 (823)
Q Consensus       252 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~l~~  331 (823)
                      ...+.+.|.++++++ .+|..+.  +++++|+|++|+|++..+.+|.++++|++|+|++|+|+..       ..++.++ 
T Consensus         9 ~~~~~~v~C~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l-------~~~~~l~-   77 (266)
T d1p9ag_           9 VASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-------QVDGTLP-   77 (266)
T ss_dssp             STTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-------ECCSCCT-
T ss_pred             cCCCeEEEccCCCCC-eeCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccccc-------ccccccc-
Confidence            445566788888887 4676554  4678888888888777666777777777777777776543       1223334 


Q ss_pred             ceEEEeecCCCCccCCccccccccccceEEecCCcceeccCccccCcccccEEEcccCcCCCCchhcccccCCCCEEEcc
Q 045449          332 LKVLIVTGNPLDGILPKSIGNFSLSLETILMANCSISGNIPQVVGNLSNLLVLELGGNNLTGPIPVTFSQLQTLQAFDLT  411 (823)
Q Consensus       332 L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls  411 (823)
                                              +|++|+|++|++++ .+..+.++++|+.|++++|.+.+..+..+..+.++++|+++
T Consensus        78 ------------------------~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~  132 (266)
T d1p9ag_          78 ------------------------VLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK  132 (266)
T ss_dssp             ------------------------TCCEEECCSSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECT
T ss_pred             ------------------------cccccccccccccc-cccccccccccccccccccccceeecccccccccccccccc
Confidence                                    55555555555553 35677889999999999999998888889999999999999


Q ss_pred             CCCCCCcchHhhhcCCCCCEEEcccCcCcccccccccCCCCCCeEeccCCccccccchhhhccCCCcEEeccccccccc
Q 045449          412 RNKLAGPITDELCHLARLHSLVLQGNKFSGSIPSCLGNLTSVRVLYLGLNIFTSVLSSTIWNLKDILFIDVSSNFLDGP  490 (823)
Q Consensus       412 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~  490 (823)
                      +|.++...+..+..+++|+.|++++|++++..+..|..+++|++|+|++|+|+ .+|..+..++.|+.|+|++|.+...
T Consensus       133 ~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~Cd  210 (266)
T d1p9ag_         133 GNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCN  210 (266)
T ss_dssp             TSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCS
T ss_pred             ccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCCCC
Confidence            99999888888999999999999999999988899999999999999999999 5888899999999999999998753

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.85  E-value=4.3e-23  Score=223.79  Aligned_cols=144  Identities=25%  Similarity=0.269  Sum_probs=118.2

Q ss_pred             ccCCccceeeccC------------CeEEEEEEehHhhHHHHHHHHHHHHHHhhcchhhHH-----------H-------
Q 045449          628 DRFSENNLIGIGN------------GMEVAVKVFHQQYERALKSFEDECEVRKRIRHRNLV-----------K-------  677 (823)
Q Consensus       628 ~~f~~~~~lg~g~------------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv-----------~-------  677 (823)
                      ++|...+.||+|+            |+.||||+++... ...+.+.+|+.++++++|++++           +       
T Consensus        13 ~rY~i~~~LG~G~fg~Vy~~~~~~~g~~vAvKvi~~~~-~~~~~~~~Ei~~l~~l~~~~~~~~~~~~~~~iv~~~~~~~~   91 (362)
T d1q8ya_          13 ARYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGDK-VYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFNH   91 (362)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCH-HHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEEEEE
T ss_pred             CcEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeccc-cchHHHHHHHHHHHHhcchhhhhhhhcCcCceEEEEEEeee
Confidence            3578889999996            6779999997653 3346788999999998776543           3       


Q ss_pred             --------------------------------------HHHHHHHHhhhcCC-CCEEeccCCCCCEEeCCCC------cE
Q 045449          678 --------------------------------------IISSSLEYLHFGHS-IPIIHCDLKPSNVLLDEDM------VA  712 (823)
Q Consensus       678 --------------------------------------~~~~~l~~L~~~h~-~~ivHrdlk~~NiLl~~~~------~~  712 (823)
                                                            ++.|++.+|+|+|+ .||+||||||+|||++.++      .+
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~qil~al~~lh~~~~IvHrDlKp~NIll~~~~~~~~~~~~  171 (362)
T d1q8ya_          92 KGPNGVHVVMVFEVLGENLLALIKKYEHRGIPLIYVKQISKQLLLGLDYMHRRCGIIHTDIKPENVLMEIVDSPENLIQI  171 (362)
T ss_dssp             EETTEEEEEEEECCCCEEHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHTTCEECSCCSGGGEEEEEEETTTTEEEE
T ss_pred             ccccceeeeeeecccccccccccccccccCCcHHHHHHHHHHHHHHHHHHhhhcCcccccCChhHeeeeccCccccccee
Confidence                                                  36788899999986 8999999999999997554      48


Q ss_pred             EEeecccccccCCCCccccccccccCCCcCcccccCCCccccccceehhhhhhccccCCCCCcCC
Q 045449          713 HISDFGIAKLLSGEDQLSKQTQTLATIGYMAPEYGTKGRVSTRGDVCSFGIISGGKETRSMTVGE  777 (823)
Q Consensus       713 kl~DfGla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~S~Gvv~~~~~~~~~~~~~  777 (823)
                      |++|||.|+.....     ....+||+.|+|||++....|+.++||||+||+++++++|+.||..
T Consensus       172 kl~dfg~s~~~~~~-----~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pF~~  231 (362)
T d1q8ya_         172 KIADLGNACWYDEH-----YTNSIQTREYRSPEVLLGAPWGCGADIWSTACLIFELITGDFLFEP  231 (362)
T ss_dssp             EECCCTTCEETTBC-----CCSCCSCGGGCCHHHHHTCCCCTHHHHHHHHHHHHHHHHSSCCC--
T ss_pred             eEeecccccccccc-----cccccccccccChhhccccCCCccccccchHHHHHHHHHCCCCCCC
Confidence            99999999865322     2346799999999999999999999999999999999999999864

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.84  E-value=1.4e-19  Score=194.28  Aligned_cols=303  Identities=25%  Similarity=0.316  Sum_probs=175.4

Q ss_pred             cEEEEEcCCCCCccccCcccCCCCCCcEEEccCCCCCCCCCCCCCCCCCCCEEECCCCcCcCCCchhhhcCCCCcEEecc
Q 045449           53 RVIGLNISSFNLQGTITPQLGNLSSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQLFGSLSSFIFNMSSMTTIDLS  132 (823)
Q Consensus        53 ~v~~L~L~~~~l~g~~~~~l~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls  132 (823)
                      +++.|||++++++ .+|+.   +++|++|+|++|+|+ .+|..+   .+|+.|++++|+++. ++..   .++|++|||+
T Consensus        39 ~l~~LdLs~~~L~-~lp~~---~~~L~~L~Ls~N~l~-~lp~~~---~~L~~L~l~~n~l~~-l~~l---p~~L~~L~L~  106 (353)
T d1jl5a_          39 QAHELELNNLGLS-SLPEL---PPHLESLVASCNSLT-ELPELP---QSLKSLLVDNNNLKA-LSDL---PPLLEYLGVS  106 (353)
T ss_dssp             TCSEEECTTSCCS-CCCSC---CTTCSEEECCSSCCS-SCCCCC---TTCCEEECCSSCCSC-CCSC---CTTCCEEECC
T ss_pred             CCCEEEeCCCCCC-CCCCC---CCCCCEEECCCCCCc-ccccch---hhhhhhhhhhcccch-hhhh---cccccccccc
Confidence            4678999999998 46754   468999999999998 678654   578999999999873 3321   2469999999


Q ss_pred             cccccCccCccccCCCCCCccccccceeeeccceeeccCccccccchhhHHHHHhhcCCCcccCCcccCCcchhhhhccc
Q 045449          133 INRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEIGNLTKLKEIISTITNSTVCEIPREIGNLPYLARLALA  212 (823)
Q Consensus       133 ~N~l~~~~p~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~~l~~n~~~~~ip~~l~~l~~L~~L~Ls  212 (823)
                      +|.++ .+|.        ++.+++|++|++++|.++. .|.....+.                            .+++.
T Consensus       107 ~n~l~-~lp~--------~~~l~~L~~L~l~~~~~~~-~~~~~~~l~----------------------------~l~~~  148 (353)
T d1jl5a_         107 NNQLE-KLPE--------LQNSSFLKIIDVDNNSLKK-LPDLPPSLE----------------------------FIAAG  148 (353)
T ss_dssp             SSCCS-SCCC--------CTTCTTCCEEECCSSCCSC-CCCCCTTCC----------------------------EEECC
T ss_pred             ccccc-cccc--------hhhhccceeeccccccccc-ccccccccc----------------------------chhhc
Confidence            99987 3332        3678899999999998873 333322222                            22333


Q ss_pred             cccccCCccccccCCCCCcEEEccCCcccccCCcccccCCCCccEEEeeccccccccCccccCCCCCCeEEeeccccccc
Q 045449          213 TNNLVGVVPVTIFNMSALKEISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSITNSSKLSDLELGENLFSGF  292 (823)
Q Consensus       213 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~lp~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~  292 (823)
                      .+...  .+..+..++.++.+++++|.+. .++..    ....+.+..+.+.+. .+| .+..++.|+.+++++|.... 
T Consensus       149 ~~~~~--~~~~l~~l~~l~~L~l~~n~~~-~~~~~----~~~~~~l~~~~~~~~-~~~-~~~~l~~L~~l~l~~n~~~~-  218 (353)
T d1jl5a_         149 NNQLE--ELPELQNLPFLTAIYADNNSLK-KLPDL----PLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-  218 (353)
T ss_dssp             SSCCS--SCCCCTTCTTCCEEECCSSCCS-SCCCC----CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-
T ss_pred             ccccc--ccccccccccceeccccccccc-ccccc----ccccccccccccccc-ccc-cccccccccccccccccccc-
Confidence            22222  2234455666667777766665 23221    223345555555444 222 34566677777777776553 


Q ss_pred             CCCccCCCcccCcccccCccccCCCCcccccccccCCCCceEEEeecCCCCccCCccccccccccceEEecCCcceeccC
Q 045449          293 IPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGILPKSIGNFSLSLETILMANCSISGNIP  372 (823)
Q Consensus       293 ~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~p  372 (823)
                      ++.   ...++..+.+.+|.+.....         ....+...++..|.+.+.     ..++......++..+.+.+.  
T Consensus       219 ~~~---~~~~l~~~~~~~~~~~~~~~---------~~~~l~~~~~~~~~~~~l-----~~l~~~~~~~~~~~~~~~~~--  279 (353)
T d1jl5a_         219 LPD---LPPSLEALNVRDNYLTDLPE---------LPQSLTFLDVSENIFSGL-----SELPPNLYYLNASSNEIRSL--  279 (353)
T ss_dssp             CCS---CCTTCCEEECCSSCCSCCCC---------CCTTCCEEECCSSCCSEE-----SCCCTTCCEEECCSSCCSEE--
T ss_pred             ccc---cccccccccccccccccccc---------cccccccccccccccccc-----ccccchhcccccccCccccc--
Confidence            222   23345555566665554311         123444555555555432     11223344455555555432  


Q ss_pred             ccccCcccccEEEcccCcCCCCchhcccccCCCCEEEccCCCCCCcchHhhhcCCCCCEEEcccCcCcccccc
Q 045449          373 QVVGNLSNLLVLELGGNNLTGPIPVTFSQLQTLQAFDLTRNKLAGPITDELCHLARLHSLVLQGNKFSGSIPS  445 (823)
Q Consensus       373 ~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~  445 (823)
                        ...+++|++|+|++|+|+ .+|..   +++|+.|+|++|+|+ .+|.   .+++|+.|+|++|+++ .+|.
T Consensus       280 --~~~~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~L~~N~L~-~l~~---~~~~L~~L~L~~N~L~-~lp~  341 (353)
T d1jl5a_         280 --CDLPPSLEELNVSNNKLI-ELPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLR-EFPD  341 (353)
T ss_dssp             --CCCCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCS-SCCC
T ss_pred             --cccCCCCCEEECCCCccC-ccccc---cCCCCEEECCCCcCC-cccc---ccCCCCEEECcCCcCC-CCCc
Confidence              123456666777766666 44432   455666666666666 3442   2345666666666665 4443

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.84  E-value=3.7e-19  Score=191.01  Aligned_cols=304  Identities=21%  Similarity=0.237  Sum_probs=154.0

Q ss_pred             CCCcEEEccCCCCCCCCCCCCCCCCCCCEEECCCCcCcCCCchhhhcCCCCcEEecccccccCccCccccCCCCCCcccc
Q 045449           76 SSLQTLDLSHNKLSGNIPSSIFNMHTLKLLDFSDNQLFGSLSSFIFNMSSMTTIDLSINRLSGELPANICKIPSTLSKCK  155 (823)
Q Consensus        76 ~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~~p~~~~~l~  155 (823)
                      .++++|||++|.++ .+|+.   .++|++|+|++|+|+ .+|+.   +.+|+.|++++|+++ .++    .+|      +
T Consensus        38 ~~l~~LdLs~~~L~-~lp~~---~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~-~l~----~lp------~   98 (353)
T d1jl5a_          38 RQAHELELNNLGLS-SLPEL---PPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLK-ALS----DLP------P   98 (353)
T ss_dssp             HTCSEEECTTSCCS-CCCSC---CTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCS-CCC----SCC------T
T ss_pred             cCCCEEEeCCCCCC-CCCCC---CCCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccc-hhh----hhc------c
Confidence            36889999999987 56753   467888888888887 45654   356777788887776 222    111      3


Q ss_pred             ccceeeeccceeeccCccccccchhhHHHHHhhcCCCcccCCcccCCcchhhhhccccccccCCccccccCCCCCcEEEc
Q 045449          156 QLEELNLGFNNLSGAIPKEIGNLTKLKEIISTITNSTVCEIPREIGNLPYLARLALATNNLVGVVPVTIFNMSALKEISL  235 (823)
Q Consensus       156 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~~l~~n~~~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  235 (823)
                      +|++|++++|.++ .+|.                          ++.+++|++|++++|.+.....    ....+..+.+
T Consensus        99 ~L~~L~L~~n~l~-~lp~--------------------------~~~l~~L~~L~l~~~~~~~~~~----~~~~l~~l~~  147 (353)
T d1jl5a_          99 LLEYLGVSNNQLE-KLPE--------------------------LQNSSFLKIIDVDNNSLKKLPD----LPPSLEFIAA  147 (353)
T ss_dssp             TCCEEECCSSCCS-SCCC--------------------------CTTCTTCCEEECCSSCCSCCCC----CCTTCCEEEC
T ss_pred             ccccccccccccc-cccc--------------------------hhhhccceeecccccccccccc----ccccccchhh
Confidence            4677777777665 2221                          1223344455555555442211    1223334444


Q ss_pred             cCCcccccCCcccccCCCCccEEEeeccccccccCccccCCCCCCeEEeecccccccCCCccCCCcccCcccccCccccC
Q 045449          236 LNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSITNSSKLSDLELGENLFSGFIPNTIGNLRNLEFGNIADNYLTS  315 (823)
Q Consensus       236 s~N~l~g~lp~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~  315 (823)
                      ..+...                           .+..+..++.++.|++++|.+.... ...   ...+.+..+++.+..
T Consensus       148 ~~~~~~---------------------------~~~~l~~l~~l~~L~l~~n~~~~~~-~~~---~~~~~l~~~~~~~~~  196 (353)
T d1jl5a_         148 GNNQLE---------------------------ELPELQNLPFLTAIYADNNSLKKLP-DLP---LSLESIVAGNNILEE  196 (353)
T ss_dssp             CSSCCS---------------------------SCCCCTTCTTCCEEECCSSCCSSCC-CCC---TTCCEEECCSSCCSS
T ss_pred             cccccc---------------------------ccccccccccceecccccccccccc-ccc---ccccccccccccccc
Confidence            333332                           2233444445555555555444221 111   112233333333332


Q ss_pred             CCCcccccccccCCCCceEEEeecCCCCccCCccccccccccceEEecCCcceeccCccccCcccccEEEcccCcCCCCc
Q 045449          316 STPELSFLSSLTNCKKLKVLIVTGNPLDGILPKSIGNFSLSLETILMANCSISGNIPQVVGNLSNLLVLELGGNNLTGPI  395 (823)
Q Consensus       316 ~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~  395 (823)
                      .       ..+..++.|+.+++++|.... +|..    ..++..+.+..|.+... +   ....++...++..|.+.+. 
T Consensus       197 ~-------~~~~~l~~L~~l~l~~n~~~~-~~~~----~~~l~~~~~~~~~~~~~-~---~~~~~l~~~~~~~~~~~~l-  259 (353)
T d1jl5a_         197 L-------PELQNLPFLTTIYADNNLLKT-LPDL----PPSLEALNVRDNYLTDL-P---ELPQSLTFLDVSENIFSGL-  259 (353)
T ss_dssp             C-------CCCTTCTTCCEEECCSSCCSS-CCSC----CTTCCEEECCSSCCSCC-C---CCCTTCCEEECCSSCCSEE-
T ss_pred             c-------ccccccccccccccccccccc-cccc----ccccccccccccccccc-c---ccccccccccccccccccc-
Confidence            2       223445556666666655442 2221    13455555555555422 1   1233455555555555421 


Q ss_pred             hhcccccCCCCEEEccCCCCCCcchHhhhcCCCCCEEEcccCcCcccccccccCCCCCCeEeccCCccccccchhhhccC
Q 045449          396 PVTFSQLQTLQAFDLTRNKLAGPITDELCHLARLHSLVLQGNKFSGSIPSCLGNLTSVRVLYLGLNIFTSVLSSTIWNLK  475 (823)
Q Consensus       396 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~  475 (823)
                      +.   -.......++..|.+.+. +   ..+++|++|+|++|+|+ .+|..   +++|+.|+|++|+|+. +|..   ++
T Consensus       260 ~~---l~~~~~~~~~~~~~~~~~-~---~~~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~L~~N~L~~-l~~~---~~  324 (353)
T d1jl5a_         260 SE---LPPNLYYLNASSNEIRSL-C---DLPPSLEELNVSNNKLI-ELPAL---PPRLERLIASFNHLAE-VPEL---PQ  324 (353)
T ss_dssp             SC---CCTTCCEEECCSSCCSEE-C---CCCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCSC-CCCC---CT
T ss_pred             cc---ccchhcccccccCccccc-c---ccCCCCCEEECCCCccC-ccccc---cCCCCEEECCCCcCCc-cccc---cC
Confidence            11   012344556666665532 1   23456677777777766 45543   3556667777776664 3432   34


Q ss_pred             CCcEEeccccccccccCc
Q 045449          476 DILFIDVSSNFLDGPLSL  493 (823)
Q Consensus       476 ~L~~LdLs~N~l~g~~p~  493 (823)
                      +|+.|++++|+|+ .+|.
T Consensus       325 ~L~~L~L~~N~L~-~lp~  341 (353)
T d1jl5a_         325 NLKQLHVEYNPLR-EFPD  341 (353)
T ss_dssp             TCCEEECCSSCCS-SCCC
T ss_pred             CCCEEECcCCcCC-CCCc
Confidence            5666777777665 4443

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=2.5e-22  Score=224.12  Aligned_cols=397  Identities=19%  Similarity=0.150  Sum_probs=202.5

Q ss_pred             CcEEEEEcCCCCCcccc-CcccCCCCCCcEEEccCCCCCC----CCCCCCCCCCCCCEEECCCCcCcCCC----chhhh-
Q 045449           52 HRVIGLNISSFNLQGTI-TPQLGNLSSLQTLDLSHNKLSG----NIPSSIFNMHTLKLLDFSDNQLFGSL----SSFIF-  121 (823)
Q Consensus        52 ~~v~~L~L~~~~l~g~~-~~~l~~l~~L~~L~Ls~N~l~g----~~p~~~~~l~~L~~L~Ls~N~l~~~~----p~~~~-  121 (823)
                      .++++||++++++++.- ..-+..++++++|+|++|.|+.    .+...+..+++|++|||++|.|+...    ...+. 
T Consensus         2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~   81 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   81 (460)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhc
Confidence            46899999999998632 3335667899999999999872    34456778999999999999986322    22222 


Q ss_pred             cCCCCcEEecccccccCccCccccCCCCCCccccccceeeeccceeeccCccccccchhhHHHHHhhcCCCcccCCcccC
Q 045449          122 NMSSMTTIDLSINRLSGELPANICKIPSTLSKCKQLEELNLGFNNLSGAIPKEIGNLTKLKEIISTITNSTVCEIPREIG  201 (823)
Q Consensus       122 ~l~~L~~L~Ls~N~l~~~~p~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~~l~~n~~~~~ip~~l~  201 (823)
                      ...+|++|+|++|+++...   +..++..+..+++|++|+|++|.++..-...      +...  +.....         
T Consensus        82 ~~~~L~~L~L~~n~it~~~---~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~------l~~~--l~~~~~---------  141 (460)
T d1z7xw1          82 PSCKIQKLSLQNCCLTGAG---CGVLSSTLRTLPTLQELHLSDNLLGDAGLQL------LCEG--LLDPQC---------  141 (460)
T ss_dssp             TTCCCCEEECTTSCCBGGG---HHHHHHHTTSCTTCCEEECCSSBCHHHHHHH------HHHH--HTSTTC---------
T ss_pred             CCCCCCEEECCCCCccccc---cccccchhhccccccccccccccchhhhhhh------hhhc--cccccc---------
Confidence            2357999999999987431   1123334578899999999999887321111      1110  000000         


Q ss_pred             CcchhhhhccccccccCC----ccccccCCCCCcEEEccCCccccc----CCcccccCCCCccEEEeeccccccc----c
Q 045449          202 NLPYLARLALATNNLVGV----VPVTIFNMSALKEISLLNNSLSGS----LPSRIDLSLPNVETLNLGINSFSGT----I  269 (823)
Q Consensus       202 ~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~g~----lp~~~~~~l~~L~~L~Ls~N~l~~~----~  269 (823)
                         ...........+...    .-..+.....++.++++++.+...    +...+.........+++..+.+...    .
T Consensus       142 ---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~  218 (460)
T d1z7xw1         142 ---RLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDL  218 (460)
T ss_dssp             ---CCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHH
T ss_pred             ---ccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhcc
Confidence               000011111111100    001122345666777776655411    1111111233455666666654321    1


Q ss_pred             CccccCCCCCCeEEeecccccc-----cCCCccCCCcccCcccccCccccCCCCcccccccccCCCCceEEEeecCCCCc
Q 045449          270 PSSITNSSKLSDLELGENLFSG-----FIPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDG  344 (823)
Q Consensus       270 p~~~~~l~~L~~L~Ls~N~l~~-----~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~  344 (823)
                      ...+...+.++.+++++|++..     ..+..+.....++.+++++|.+...... .....+...+.++.+++++|.++.
T Consensus       219 ~~~l~~~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~-~~~~~l~~~~~l~~l~l~~n~i~~  297 (460)
T d1z7xw1         219 CGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCG-DLCRVLRAKESLKELSLAGNELGD  297 (460)
T ss_dssp             HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHH-HHHHHHHHCTTCCEEECTTCCCHH
T ss_pred             cccccccccccccchhhccccccccchhhcccccccccccccccccccccccccc-cccccccccccccccccccccccc
Confidence            1223445667777777776532     2223334455666666666665432110 022233445556666666666543


Q ss_pred             cCCccccccccccceEEecCCcceeccCccccCcccccEEEcccCcCCCCchh----cccccCCCCEEEccCCCCCCc--
Q 045449          345 ILPKSIGNFSLSLETILMANCSISGNIPQVVGNLSNLLVLELGGNNLTGPIPV----TFSQLQTLQAFDLTRNKLAGP--  418 (823)
Q Consensus       345 ~~p~~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~----~~~~l~~L~~L~Ls~N~l~~~--  418 (823)
                      .....+...                    .......|+.+++++|.++.....    .+....+|++|+|++|++++.  
T Consensus       298 ~~~~~l~~~--------------------l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~  357 (460)
T d1z7xw1         298 EGARLLCET--------------------LLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGV  357 (460)
T ss_dssp             HHHHHHHHH--------------------HTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHH
T ss_pred             cccchhhcc--------------------ccccccccccccccccchhhhhhhhcccccccccchhhhheeeecccCccc
Confidence            211111000                    001123455555555555433222    122334555566665555432  


Q ss_pred             --chHhhh-cCCCCCEEEcccCcCccc----ccccccCCCCCCeEeccCCccccccchhhh-----ccCCCcEEeccccc
Q 045449          419 --ITDELC-HLARLHSLVLQGNKFSGS----IPSCLGNLTSVRVLYLGLNIFTSVLSSTIW-----NLKDILFIDVSSNF  486 (823)
Q Consensus       419 --~p~~~~-~l~~L~~L~Ls~N~l~g~----~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~-----~l~~L~~LdLs~N~  486 (823)
                        ++..+. ..+.|++|+|++|.|+..    ++..+..+++|++|+|++|+++......+.     +...|+.|++++|.
T Consensus       358 ~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~  437 (460)
T d1z7xw1         358 RELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIY  437 (460)
T ss_dssp             HHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCC
T ss_pred             chhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCC
Confidence              112221 234456666666665432    333444455666666666666543332221     22356666666666


Q ss_pred             cccccC
Q 045449          487 LDGPLS  492 (823)
Q Consensus       487 l~g~~p  492 (823)
                      +.....
T Consensus       438 ~~~~~~  443 (460)
T d1z7xw1         438 WSEEME  443 (460)
T ss_dssp             CCHHHH
T ss_pred             CCHHHH
Confidence            665443

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.79  E-value=4.7e-19  Score=178.14  Aligned_cols=208  Identities=22%  Similarity=0.372  Sum_probs=130.3

Q ss_pred             cchhhhhccccccccCCccccccCCCCCcEEEccCCcccccCCcccccCCCCccEEEeeccccccccCccccCCCCCCeE
Q 045449          203 LPYLARLALATNNLVGVVPVTIFNMSALKEISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSITNSSKLSDL  282 (823)
Q Consensus       203 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~lp~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  282 (823)
                      +.++..++++.+++++..  .+.++.+|++|++++|.|+ .++ .+. .+++|++|++++|++++..|  +..+++|+++
T Consensus        18 l~~~~~~~l~~~~~~d~~--~~~~l~~L~~L~l~~~~i~-~l~-~l~-~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l   90 (227)
T d1h6ua2          18 LANAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVT-TIE-GVQ-YLNNLIGLELKDNQITDLAP--LKNLTKITEL   90 (227)
T ss_dssp             HHHHHHHHTTCSSTTSEE--CHHHHHTCCEEECTTSCCC-CCT-TGG-GCTTCCEEECCSSCCCCCGG--GTTCCSCCEE
T ss_pred             HHHHHHHHhCCCCcCCcC--CHHHcCCcCEEECCCCCCC-cch-hHh-cCCCCcEeecCCceeecccc--cccccccccc
Confidence            445566788888888653  4567788899999998887 554 344 38888888888888875443  7777888888


Q ss_pred             EeecccccccCCCccCCCcccCcccccCccccCCCCcccccccccCCCCceEEEeecCCCCccCCccccccccccceEEe
Q 045449          283 ELGENLFSGFIPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGILPKSIGNFSLSLETILM  362 (823)
Q Consensus       283 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L  362 (823)
                      ++++|.++..  ..+..+++|++++++++...+.       ..+...+.++.+.++++.+...                 
T Consensus        91 ~~~~n~~~~i--~~l~~l~~L~~l~l~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~-----------------  144 (227)
T d1h6ua2          91 ELSGNPLKNV--SAIAGLQSIKTLDLTSTQITDV-------TPLAGLSNLQVLYLDLNQITNI-----------------  144 (227)
T ss_dssp             ECCSCCCSCC--GGGTTCTTCCEEECTTSCCCCC-------GGGTTCTTCCEEECCSSCCCCC-----------------
T ss_pred             cccccccccc--cccccccccccccccccccccc-------chhccccchhhhhchhhhhchh-----------------
Confidence            8888877643  2466677777777776666553       2234445555555555544432                 


Q ss_pred             cCCcceeccCccccCcccccEEEcccCcCCCCchhcccccCCCCEEEccCCCCCCcchHhhhcCCCCCEEEcccCcCccc
Q 045449          363 ANCSISGNIPQVVGNLSNLLVLELGGNNLTGPIPVTFSQLQTLQAFDLTRNKLAGPITDELCHLARLHSLVLQGNKFSGS  442 (823)
Q Consensus       363 ~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~  442 (823)
                              .  .+.++++|+.|++++|.+++..  .+.++++|++|+|++|++++. + .+.++++|++|+|++|++++.
T Consensus       145 --------~--~~~~~~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~Ls~n~l~~l-~-~l~~l~~L~~L~Ls~N~lt~i  210 (227)
T d1h6ua2         145 --------S--PLAGLTNLQYLSIGNAQVSDLT--PLANLSKLTTLKADDNKISDI-S-PLASLPNLIEVHLKNNQISDV  210 (227)
T ss_dssp             --------G--GGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCC-G-GGGGCTTCCEEECTTSCCCBC
T ss_pred             --------h--hhccccccccccccccccccch--hhcccccceecccCCCccCCC-h-hhcCCCCCCEEECcCCcCCCC
Confidence                    1  2344555666666666555322  255566666666666666543 2 255666666666666666643


Q ss_pred             ccccccCCCCCCeEecc
Q 045449          443 IPSCLGNLTSVRVLYLG  459 (823)
Q Consensus       443 ~p~~~~~l~~L~~L~Ls  459 (823)
                      .|  ++++++|+.|+++
T Consensus       211 ~~--l~~l~~L~~L~ls  225 (227)
T d1h6ua2         211 SP--LANTSNLFIVTLT  225 (227)
T ss_dssp             GG--GTTCTTCCEEEEE
T ss_pred             cc--cccCCCCCEEEee
Confidence            22  5666666666665

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=1.1e-21  Score=218.86  Aligned_cols=188  Identities=19%  Similarity=0.188  Sum_probs=131.6

Q ss_pred             cccCCCCceEEEeecCCCCcc-----CCccccccccccceEEecCCcceecc----CccccCcccccEEEcccCcCCCCc
Q 045449          325 SLTNCKKLKVLIVTGNPLDGI-----LPKSIGNFSLSLETILMANCSISGNI----PQVVGNLSNLLVLELGGNNLTGPI  395 (823)
Q Consensus       325 ~l~~l~~L~~L~Ls~N~l~~~-----~p~~~~~~~~~L~~L~L~~N~l~~~~----p~~~~~l~~L~~L~Ls~N~l~g~~  395 (823)
                      .+...+.++.+++++|.+...     .+...... ..++.+++++|.+....    ...+...+.++.+++++|.++...
T Consensus       221 ~l~~~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~-~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~  299 (460)
T d1z7xw1         221 IVASKASLRELALGSNKLGDVGMAELCPGLLHPS-SRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEG  299 (460)
T ss_dssp             HHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTT-CCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHH
T ss_pred             cccccccccccchhhccccccccchhhccccccc-ccccccccccccccccccccccccccccccccccccccccccccc
Confidence            344566777888877776432     11111222 57888888888776432    334556788999999999987432


Q ss_pred             hhcc-----cccCCCCEEEccCCCCCCcchHhh----hcCCCCCEEEcccCcCccc----cccccc-CCCCCCeEeccCC
Q 045449          396 PVTF-----SQLQTLQAFDLTRNKLAGPITDEL----CHLARLHSLVLQGNKFSGS----IPSCLG-NLTSVRVLYLGLN  461 (823)
Q Consensus       396 p~~~-----~~l~~L~~L~Ls~N~l~~~~p~~~----~~l~~L~~L~Ls~N~l~g~----~p~~~~-~l~~L~~L~Ls~N  461 (823)
                      ...+     .....|+.+++++|.++......+    ....+|++|+|++|+++..    ++..+. ..+.|++|+|++|
T Consensus       300 ~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n  379 (460)
T d1z7xw1         300 ARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADC  379 (460)
T ss_dssp             HHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred             cchhhccccccccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCC
Confidence            2222     234689999999999986644433    4567899999999999753    333443 4677999999999


Q ss_pred             ccccc----cchhhhccCCCcEEeccccccccccCccc----c-CCCCCcEEEcccCCCCC
Q 045449          462 IFTSV----LSSTIWNLKDILFIDVSSNFLDGPLSLDI----G-NLKVVIGLDFSRNNLSG  513 (823)
Q Consensus       462 ~l~~~----~p~~~~~l~~L~~LdLs~N~l~g~~p~~~----~-~l~~L~~L~ls~N~l~g  513 (823)
                      .++..    ++..+...++|++|||++|+++......+    . +...|+.|++++|++..
T Consensus       380 ~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~  440 (460)
T d1z7xw1         380 DVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSE  440 (460)
T ss_dssp             CCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCH
T ss_pred             CCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCH
Confidence            99864    45567778999999999999986543333    2 34579999999998874

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=7.4e-19  Score=178.48  Aligned_cols=199  Identities=16%  Similarity=0.140  Sum_probs=91.7

Q ss_pred             CCcEEEccCCcccccCCcccccCCCCccEEEeecccccccc-CccccCCCCCCeEEeec-ccccccCCCccCCCcccCcc
Q 045449          229 ALKEISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTI-PSSITNSSKLSDLELGE-NLFSGFIPNTIGNLRNLEFG  306 (823)
Q Consensus       229 ~L~~L~Ls~N~l~g~lp~~~~~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L  306 (823)
                      ++++|+|++|.|+ .+|...+.++++|++|+|++|.+...+ +.+|.+++++++|++.. |++....+..|..+++|+.+
T Consensus        30 ~l~~L~Ls~n~i~-~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l  108 (242)
T d1xwdc1          30 NAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL  108 (242)
T ss_dssp             CCSEEEEESCCCC-EECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEE
T ss_pred             CCCEEECcCCcCC-ccChhHhhccchhhhhhhccccccceeecccccccccccccccccccccccccccccccccccccc
Confidence            3444444444444 344333333444444444444444322 22344444444444432 34444444444444444444


Q ss_pred             cccCccccCCCCcccccccccCCCCceEEEeecCCCCccCCccccccccccceEEecCCcceeccCccccCcc-cccEEE
Q 045449          307 NIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGILPKSIGNFSLSLETILMANCSISGNIPQVVGNLS-NLLVLE  385 (823)
Q Consensus       307 ~L~~N~l~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~-~L~~L~  385 (823)
                      ++++|.++....    ...+..+.                         .+..+...++.+....+..|.+++ .++.|+
T Consensus       109 ~l~~~~l~~~~~----~~~~~~l~-------------------------~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~  159 (242)
T d1xwdc1         109 LISNTGIKHLPD----VHKIHSLQ-------------------------KVLLDIQDNINIHTIERNSFVGLSFESVILW  159 (242)
T ss_dssp             EEESCCCCSCCC----CTTTCBSS-------------------------CEEEEEESCTTCCEECTTSSTTSBSSCEEEE
T ss_pred             ccchhhhccccc----cccccccc-------------------------ccccccccccccccccccccccccccceeee
Confidence            444444433211    11122223                         333444444455444444444443 455566


Q ss_pred             cccCcCCCCchhcccccCCCC-EEEccCCCCCCcchHhhhcCCCCCEEEcccCcCcccccccccCCCCCCeEec
Q 045449          386 LGGNNLTGPIPVTFSQLQTLQ-AFDLTRNKLAGPITDELCHLARLHSLVLQGNKFSGSIPSCLGNLTSVRVLYL  458 (823)
Q Consensus       386 Ls~N~l~g~~p~~~~~l~~L~-~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~L  458 (823)
                      +++|+++...+..|. ..+++ .+++++|+++...+..|.++++|++|+|++|+|+...+..|.+++.|+.+++
T Consensus       160 l~~n~l~~i~~~~~~-~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~  232 (242)
T d1xwdc1         160 LNKNGIQEIHNCAFN-GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST  232 (242)
T ss_dssp             CCSSCCCEECTTTTT-TCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSE
T ss_pred             ccccccccccccccc-chhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcC
Confidence            666666533332232 23333 3345555666444444566666666666666666443444556555555544

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=1.1e-18  Score=177.08  Aligned_cols=220  Identities=17%  Similarity=0.164  Sum_probs=149.3

Q ss_pred             cEEEccCCcccccCCcccccCCCCccEEEeeccccccccCccccCCCCCCeEEeecccccccC-CCccCCCcccCccccc
Q 045449          231 KEISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSITNSSKLSDLELGENLFSGFI-PNTIGNLRNLEFGNIA  309 (823)
Q Consensus       231 ~~L~Ls~N~l~g~lp~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~L~  309 (823)
                      +.++.+++.++ .+|..++   +++++|||++|+|+...+..|.++++|++|++++|.+...+ +..|.++++++++++.
T Consensus        11 ~~i~c~~~~l~-~iP~~l~---~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~   86 (242)
T d1xwdc1          11 RVFLCQESKVT-EIPSDLP---RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   86 (242)
T ss_dssp             SEEEEESCSCS-SCCSCSC---SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEE
T ss_pred             CEEEEeCCCCC-CcCCCCC---CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccc
Confidence            46677777776 6776553   36777777777777555556777777777777777766543 3345555555554433


Q ss_pred             CccccCCCCcccccccccCCCCceEEEeecCCCCccCCccccccccccceEEecCCcceeccC-ccccCcccccEEEccc
Q 045449          310 DNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGILPKSIGNFSLSLETILMANCSISGNIP-QVVGNLSNLLVLELGG  388 (823)
Q Consensus       310 ~N~l~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~Ls~  388 (823)
                      .                            .|++....+..|.++ ++|+++++++|+++...+ ..+..++.+..+..++
T Consensus        87 ~----------------------------~n~l~~~~~~~~~~l-~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n  137 (242)
T d1xwdc1          87 K----------------------------ANNLLYINPEAFQNL-PNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDN  137 (242)
T ss_dssp             C----------------------------CTTCCEECTTSEECC-TTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESC
T ss_pred             c----------------------------ccccccccccccccc-ccccccccchhhhcccccccccccccccccccccc
Confidence            2                            234444444455555 456666666665553322 2344567778888888


Q ss_pred             CcCCCCchhcccccC-CCCEEEccCCCCCCcchHhhhcCCCCCEE-EcccCcCcccccccccCCCCCCeEeccCCccccc
Q 045449          389 NNLTGPIPVTFSQLQ-TLQAFDLTRNKLAGPITDELCHLARLHSL-VLQGNKFSGSIPSCLGNLTSVRVLYLGLNIFTSV  466 (823)
Q Consensus       389 N~l~g~~p~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L-~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~  466 (823)
                      +++....+..|..++ .++.|++++|+++...+..| ...++..+ ++++|+++...+..|.++++|++|+|++|+++..
T Consensus       138 ~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~-~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l  216 (242)
T d1xwdc1         138 INIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSL  216 (242)
T ss_dssp             TTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTTT-TTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCC
T ss_pred             cccccccccccccccccceeeecccccccccccccc-cchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCcc
Confidence            888866667777665 78999999999996555444 44555544 6788889865566789999999999999999987


Q ss_pred             cchhhhccCCCcEEeccc
Q 045449          467 LSSTIWNLKDILFIDVSS  484 (823)
Q Consensus       467 ~p~~~~~l~~L~~LdLs~  484 (823)
                      .+..|.+++.|+++++.+
T Consensus       217 ~~~~~~~l~~L~~l~~~~  234 (242)
T d1xwdc1         217 PSYGLENLKKLRARSTYN  234 (242)
T ss_dssp             CSSSCTTCCEEESSSEES
T ss_pred             CHHHHcCCcccccCcCCC
Confidence            777788888888877654

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.76  E-value=2e-18  Score=173.42  Aligned_cols=205  Identities=19%  Similarity=0.272  Sum_probs=123.5

Q ss_pred             ccEEEeeccccccccCccccCCCCCCeEEeecccccccCCCccCCCcccCcccccCccccCCCCcccccccccCCCCceE
Q 045449          255 VETLNLGINSFSGTIPSSITNSSKLSDLELGENLFSGFIPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKV  334 (823)
Q Consensus       255 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~l~~L~~  334 (823)
                      +..++++.+++++.+  .+.++.+|+.|++++|.++..  +.+..+++|++|++++|++++.       ..+..+++|+.
T Consensus        21 ~~~~~l~~~~~~d~~--~~~~l~~L~~L~l~~~~i~~l--~~l~~l~~L~~L~ls~n~i~~~-------~~l~~l~~l~~   89 (227)
T d1h6ua2          21 AIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDL-------APLKNLTKITE   89 (227)
T ss_dssp             HHHHHTTCSSTTSEE--CHHHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCC-------GGGTTCCSCCE
T ss_pred             HHHHHhCCCCcCCcC--CHHHcCCcCEEECCCCCCCcc--hhHhcCCCCcEeecCCceeecc-------ccccccccccc
Confidence            344566666666543  345666777777777777754  2466677777777777766654       12555566666


Q ss_pred             EEeecCCCCccCCccccccccccceEEecCCcceeccCccccCcccccEEEcccCcCCCCchhcccccCCCCEEEccCCC
Q 045449          335 LIVTGNPLDGILPKSIGNFSLSLETILMANCSISGNIPQVVGNLSNLLVLELGGNNLTGPIPVTFSQLQTLQAFDLTRNK  414 (823)
Q Consensus       335 L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~  414 (823)
                      +++++|.++..                           ..+..+++|+.++++++...+..  .+...+.++.+.++++.
T Consensus        90 l~~~~n~~~~i---------------------------~~l~~l~~L~~l~l~~~~~~~~~--~~~~~~~~~~l~~~~~~  140 (227)
T d1h6ua2          90 LELSGNPLKNV---------------------------SAIAGLQSIKTLDLTSTQITDVT--PLAGLSNLQVLYLDLNQ  140 (227)
T ss_dssp             EECCSCCCSCC---------------------------GGGTTCTTCCEEECTTSCCCCCG--GGTTCTTCCEEECCSSC
T ss_pred             ccccccccccc---------------------------ccccccccccccccccccccccc--hhccccchhhhhchhhh
Confidence            66665555421                           12445556666666666655332  24445566666666666


Q ss_pred             CCCcchHhhhcCCCCCEEEcccCcCcccccccccCCCCCCeEeccCCccccccchhhhccCCCcEEeccccccccccCcc
Q 045449          415 LAGPITDELCHLARLHSLVLQGNKFSGSIPSCLGNLTSVRVLYLGLNIFTSVLSSTIWNLKDILFIDVSSNFLDGPLSLD  494 (823)
Q Consensus       415 l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~~p~~  494 (823)
                      +....+  +.++++|+.|++++|.+++..  .++++++|+.|+|++|++++..  .+..+++|++|+|++|++++..|  
T Consensus       141 ~~~~~~--~~~~~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~Ls~n~l~~l~--~l~~l~~L~~L~Ls~N~lt~i~~--  212 (227)
T d1h6ua2         141 ITNISP--LAGLTNLQYLSIGNAQVSDLT--PLANLSKLTTLKADDNKISDIS--PLASLPNLIEVHLKNNQISDVSP--  212 (227)
T ss_dssp             CCCCGG--GGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCCG--GGGGCTTCCEEECTTSCCCBCGG--
T ss_pred             hchhhh--hccccccccccccccccccch--hhcccccceecccCCCccCCCh--hhcCCCCCCEEECcCCcCCCCcc--
Confidence            654322  455666666666666665432  2566667777777777766532  26667777777777777765432  


Q ss_pred             ccCCCCCcEEEcc
Q 045449          495 IGNLKVVIGLDFS  507 (823)
Q Consensus       495 ~~~l~~L~~L~ls  507 (823)
                      +++++.|+.|+++
T Consensus       213 l~~l~~L~~L~ls  225 (227)
T d1h6ua2         213 LANTSNLFIVTLT  225 (227)
T ss_dssp             GTTCTTCCEEEEE
T ss_pred             cccCCCCCEEEee
Confidence            6677777777775

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.75  E-value=8.3e-19  Score=171.27  Aligned_cols=173  Identities=23%  Similarity=0.292  Sum_probs=114.8

Q ss_pred             eEEEeecCCCCccCCccccccccccceEEecCCcceec-cCccccCcccccEEEcccCcCCCCchhcccccCCCCEEEcc
Q 045449          333 KVLIVTGNPLDGILPKSIGNFSLSLETILMANCSISGN-IPQVVGNLSNLLVLELGGNNLTGPIPVTFSQLQTLQAFDLT  411 (823)
Q Consensus       333 ~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~-~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls  411 (823)
                      +.++.++|+++ .+|..+   +.++++|+|++|+|++. .+..|.++++|+.|+|++|++.+..+..|..+++|++|+|+
T Consensus        11 ~~v~Cs~~~L~-~iP~~l---p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls   86 (192)
T d1w8aa_          11 TTVDCTGRGLK-EIPRDI---PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             TEEECTTSCCS-SCCSCC---CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CEEEEeCCCcC-ccCCCC---CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeec
Confidence            35666777776 345543   25677777777777653 35566777777777777777777777777777777777777


Q ss_pred             CCCCCCcchHhhhcCCCCCEEEcccCcCcccccccccCCCCCCeEeccCCccccccchhhhccCCCcEEecccccccccc
Q 045449          412 RNKLAGPITDELCHLARLHSLVLQGNKFSGSIPSCLGNLTSVRVLYLGLNIFTSVLSSTIWNLKDILFIDVSSNFLDGPL  491 (823)
Q Consensus       412 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~~  491 (823)
                      +|+|++..|..|.++++|++|+|++|+|++..|..|..+++|++|+|++|.+....... +-...++.+.+..|.+++..
T Consensus        87 ~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~-~~~~~l~~~~l~~~~~~c~~  165 (192)
T d1w8aa_          87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLA-WFAEWLRKKSLNGGAARCGA  165 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGH-HHHHHHHHHCCSGGGCBBCS
T ss_pred             cccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchH-HHhhhhhhhcccCCCeEeCC
Confidence            77777766667777777777777777777777777777777777777777776543321 11223445556666666655


Q ss_pred             CccccCCCCCcEEEcccCCCCC
Q 045449          492 SLDIGNLKVVIGLDFSRNNLSG  513 (823)
Q Consensus       492 p~~~~~l~~L~~L~ls~N~l~g  513 (823)
                      |..+   ..++.+||+.|.|..
T Consensus       166 p~~l---~~~~l~~L~~n~l~C  184 (192)
T d1w8aa_         166 PSKV---RDVQIKDLPHSEFKC  184 (192)
T ss_dssp             STTT---TTSBGGGSCTTTCCC
T ss_pred             Chhh---cCCEeeecCHhhCcC
Confidence            5433   334455666666653

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.74  E-value=2.5e-18  Score=167.84  Aligned_cols=179  Identities=18%  Similarity=0.204  Sum_probs=136.6

Q ss_pred             ccceEEecCCcceeccCccccCcccccEEEcccCcCCCCc-hhcccccCCCCEEEccCCCCCCcchHhhhcCCCCCEEEc
Q 045449          356 SLETILMANCSISGNIPQVVGNLSNLLVLELGGNNLTGPI-PVTFSQLQTLQAFDLTRNKLAGPITDELCHLARLHSLVL  434 (823)
Q Consensus       356 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~-p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  434 (823)
                      +.++++.++++++ .+|..+.  +++++|+|++|+|++.+ +..|.++++|+.|+|++|++++..+..|..+++|++|+|
T Consensus         9 ~~~~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~L   85 (192)
T d1w8aa_           9 EGTTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQL   85 (192)
T ss_dssp             ETTEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             cCCEEEEeCCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeee
Confidence            3567888888888 5666553  67889999999998644 556788999999999999999888888888999999999


Q ss_pred             ccCcCcccccccccCCCCCCeEeccCCccccccchhhhccCCCcEEeccccccccccCccccCCCCCcEEEcccCCCCCC
Q 045449          435 QGNKFSGSIPSCLGNLTSVRVLYLGLNIFTSVLSSTIWNLKDILFIDVSSNFLDGPLSLDIGNLKVVIGLDFSRNNLSGD  514 (823)
Q Consensus       435 s~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~  514 (823)
                      ++|+|++..|..|.++++|++|+|++|+|+++.|..|..+++|++|+|++|.+.+..+... -...++.+.+..|.+++.
T Consensus        86 s~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~-~~~~l~~~~l~~~~~~c~  164 (192)
T d1w8aa_          86 GENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAW-FAEWLRKKSLNGGAARCG  164 (192)
T ss_dssp             CSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHH-HHHHHHHHCCSGGGCBBC
T ss_pred             ccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchHH-HhhhhhhhcccCCCeEeC
Confidence            9999998888889999999999999999999888888889999999999998876544221 112345556677777755


Q ss_pred             CCCcccCccCCCCCCCCCCCcccccCCcccCCCCC
Q 045449          515 IPITIGEGEIPRGGPFANLTAKSFMGNELLCGLPD  549 (823)
Q Consensus       515 ip~~~~~g~ip~~~~~~~~~~~~~~~n~~~c~~~~  549 (823)
                      .|..+           ......++..|...|..+.
T Consensus       165 ~p~~l-----------~~~~l~~L~~n~l~C~~~~  188 (192)
T d1w8aa_         165 APSKV-----------RDVQIKDLPHSEFKCSSEN  188 (192)
T ss_dssp             SSTTT-----------TTSBGGGSCTTTCCCCCC-
T ss_pred             CChhh-----------cCCEeeecCHhhCcCCCCC
Confidence            55433           3344556777777776543

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.73  E-value=1.1e-17  Score=165.76  Aligned_cols=185  Identities=23%  Similarity=0.305  Sum_probs=117.4

Q ss_pred             hhhhhccccccccCCccccccCCCCCcEEEccCCcccccCCcccccCCCCccEEEeeccccccccCccccCCCCCCeEEe
Q 045449          205 YLARLALATNNLVGVVPVTIFNMSALKEISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSITNSSKLSDLEL  284 (823)
Q Consensus       205 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~lp~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L  284 (823)
                      +....++..+.+++.++.  ..+.+|++|++++|.++ .++ .+. .+++|++|+|++|+|++..  .++++++|++|++
T Consensus        25 ~~i~~~l~~~~~~~~~~~--~~L~~L~~L~l~~~~i~-~l~-~l~-~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l   97 (210)
T d1h6ta2          25 ETIKDNLKKKSVTDAVTQ--NELNSIDQIIANNSDIK-SVQ-GIQ-YLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFL   97 (210)
T ss_dssp             HHHHHHTTCSCTTSEECH--HHHHTCCEEECTTSCCC-CCT-TGG-GCTTCCEEECCSSCCCCCG--GGTTCTTCCEEEC
T ss_pred             HHHHHHhCcCccCCccCH--HHhcCccEEECcCCCCC-Cch-hHh-hCCCCCEEeCCCccccCcc--ccccCcccccccc
Confidence            344556777777665543  34667888888888877 343 233 3777888888888777533  2567777777777


Q ss_pred             ecccccccCCCccCCCcccCcccccCccccCCCCcccccccccCCCCceEEEeecCCCCccCCccccccccccceEEecC
Q 045449          285 GENLFSGFIPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGILPKSIGNFSLSLETILMAN  364 (823)
Q Consensus       285 s~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~  364 (823)
                      ++|++++. | .+..+++|+.|++++|.+...       ..+..+++++.+++++|.+++                    
T Consensus        98 ~~n~i~~l-~-~l~~l~~L~~L~l~~~~~~~~-------~~l~~l~~l~~l~~~~n~l~~--------------------  148 (210)
T d1h6ta2          98 DENKVKDL-S-SLKDLKKLKSLSLEHNGISDI-------NGLVHLPQLESLYLGNNKITD--------------------  148 (210)
T ss_dssp             CSSCCCCG-G-GGTTCTTCCEEECTTSCCCCC-------GGGGGCTTCCEEECCSSCCCC--------------------
T ss_pred             cccccccc-c-ccccccccccccccccccccc-------ccccccccccccccccccccc--------------------
Confidence            77777753 2 466666666666666665543       234455555555555555442                    


Q ss_pred             CcceeccCccccCcccccEEEcccCcCCCCchhcccccCCCCEEEccCCCCCCcchHhhhcCCCCCEEEccc
Q 045449          365 CSISGNIPQVVGNLSNLLVLELGGNNLTGPIPVTFSQLQTLQAFDLTRNKLAGPITDELCHLARLHSLVLQG  436 (823)
Q Consensus       365 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~  436 (823)
                             +..+..+++|+++++++|++++. +. +.++++|+.|+|++|+++. ++ .+.++++|++|+|++
T Consensus       149 -------~~~~~~l~~L~~l~l~~n~l~~i-~~-l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         149 -------ITVLSRLTKLDTLSLEDNQISDI-VP-LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             -------CGGGGGCTTCSEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEE
T ss_pred             -------ccccccccccccccccccccccc-cc-ccCCCCCCEEECCCCCCCC-Ch-hhcCCCCCCEEEccC
Confidence                   12344566777777777777643 32 6677777777777777774 34 467777777777764

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.71  E-value=2.2e-17  Score=162.04  Aligned_cols=181  Identities=23%  Similarity=0.310  Sum_probs=115.2

Q ss_pred             ccCcccccCccccCCCCcccccccccCCCCceEEEeecCCCCccCCccccccccccceEEecCCcceeccCccccCcccc
Q 045449          302 NLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGILPKSIGNFSLSLETILMANCSISGNIPQVVGNLSNL  381 (823)
Q Consensus       302 ~L~~L~L~~N~l~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L  381 (823)
                      +...+.++.+.+++..       ....+.+++.|++++|.++..  ..+..+ ++|++|++++|++++..|  ++++++|
T Consensus        19 ~~i~~~l~~~~~~~~~-------~~~~l~~l~~L~l~~~~i~~l--~~l~~l-~nL~~L~Ls~N~l~~~~~--l~~l~~L   86 (199)
T d2omxa2          19 EKMKTVLGKTNVTDTV-------SQTDLDQVTTLQADRLGIKSI--DGVEYL-NNLTQINFSNNQLTDITP--LKNLTKL   86 (199)
T ss_dssp             HHHHHHTTCSSTTSEE-------CHHHHTTCCEEECTTSCCCCC--TTGGGC-TTCCEEECCSSCCCCCGG--GTTCTTC
T ss_pred             HHHHHHhCCCCCCCcc-------CHHHhcCCCEEECCCCCCCCc--cccccC-CCcCcCccccccccCccc--ccCCccc
Confidence            3334455555555431       223455666666666666542  234455 567777777777665433  6677777


Q ss_pred             cEEEcccCcCCCCchhcccccCCCCEEEccCCCCCCcchHhhhcCCCCCEEEcccCcCcccccccccCCCCCCeEeccCC
Q 045449          382 LVLELGGNNLTGPIPVTFSQLQTLQAFDLTRNKLAGPITDELCHLARLHSLVLQGNKFSGSIPSCLGNLTSVRVLYLGLN  461 (823)
Q Consensus       382 ~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N  461 (823)
                      ++|++++|.+.. ++ .+.++++|+.|++++|.+....  .+..+++|+.|++++|++.. +| .+..+++|+.|++++|
T Consensus        87 ~~L~l~~n~~~~-~~-~l~~l~~L~~L~l~~~~~~~~~--~~~~l~~L~~L~l~~n~l~~-~~-~l~~~~~L~~L~l~~n  160 (199)
T d2omxa2          87 VDILMNNNQIAD-IT-PLANLTNLTGLTLFNNQITDID--PLKNLTNLNRLELSSNTISD-IS-ALSGLTSLQQLNFSSN  160 (199)
T ss_dssp             CEEECCSSCCCC-CG-GGTTCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCCC-CG-GGTTCTTCSEEECCSS
T ss_pred             cccccccccccc-cc-cccccccccccccccccccccc--ccchhhhhHHhhhhhhhhcc-cc-cccccccccccccccc
Confidence            777777777763 33 3667777777777777776432  35667777777777777763 22 4667777777777777


Q ss_pred             ccccccchhhhccCCCcEEeccccccccccCccccCCCCCcEE
Q 045449          462 IFTSVLSSTIWNLKDILFIDVSSNFLDGPLSLDIGNLKVVIGL  504 (823)
Q Consensus       462 ~l~~~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~l~~L~~L  504 (823)
                      ++++..  .+.++++|+.|++++|+++. ++ .++.+++|+.|
T Consensus       161 ~l~~l~--~l~~l~~L~~L~ls~N~i~~-i~-~l~~L~~L~~L  199 (199)
T d2omxa2         161 QVTDLK--PLANLTTLERLDISSNKVSD-IS-VLAKLTNLESL  199 (199)
T ss_dssp             CCCCCG--GGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCSEE
T ss_pred             cccCCc--cccCCCCCCEEECCCCCCCC-Cc-cccCCCCCCcC
Confidence            777643  36777777777777777765 33 46667776654

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.71  E-value=2.7e-17  Score=162.78  Aligned_cols=165  Identities=21%  Similarity=0.331  Sum_probs=107.6

Q ss_pred             CCCceEEEeecCCCCccCCccccccccccceEEecCCcceeccCccccCcccccEEEcccCcCCCCchhcccccCCCCEE
Q 045449          329 CKKLKVLIVTGNPLDGILPKSIGNFSLSLETILMANCSISGNIPQVVGNLSNLLVLELGGNNLTGPIPVTFSQLQTLQAF  408 (823)
Q Consensus       329 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L  408 (823)
                      +.+|+.|++++|.++...  .+..+ ++|++|++++|+|++..  .++.+++|++|++++|++++ +| .+..+++|+.|
T Consensus        45 L~~L~~L~l~~~~i~~l~--~l~~l-~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L  117 (210)
T d1h6ta2          45 LNSIDQIIANNSDIKSVQ--GIQYL-PNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSL  117 (210)
T ss_dssp             HHTCCEEECTTSCCCCCT--TGGGC-TTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEE
T ss_pred             hcCccEEECcCCCCCCch--hHhhC-CCCCEEeCCCccccCcc--ccccCccccccccccccccc-cc-ccccccccccc
Confidence            344555555555555432  24444 46666666666666533  24567777777777777763 44 36677777777


Q ss_pred             EccCCCCCCcchHhhhcCCCCCEEEcccCcCcccccccccCCCCCCeEeccCCccccccchhhhccCCCcEEeccccccc
Q 045449          409 DLTRNKLAGPITDELCHLARLHSLVLQGNKFSGSIPSCLGNLTSVRVLYLGLNIFTSVLSSTIWNLKDILFIDVSSNFLD  488 (823)
Q Consensus       409 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~  488 (823)
                      ++++|.+...  ..+.+++.++.+++++|.+++  +..+..+++|+.+++++|++++..  .+.++++|+.|+|++|+++
T Consensus       118 ~l~~~~~~~~--~~l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~i~--~l~~l~~L~~L~Ls~N~i~  191 (210)
T d1h6ta2         118 SLEHNGISDI--NGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIV--PLAGLTKLQNLYLSKNHIS  191 (210)
T ss_dssp             ECTTSCCCCC--GGGGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCC
T ss_pred             cccccccccc--ccccccccccccccccccccc--cccccccccccccccccccccccc--cccCCCCCCEEECCCCCCC
Confidence            7777777632  246677777777777777764  234666777777777777777643  2677777888888888776


Q ss_pred             cccCccccCCCCCcEEEccc
Q 045449          489 GPLSLDIGNLKVVIGLDFSR  508 (823)
Q Consensus       489 g~~p~~~~~l~~L~~L~ls~  508 (823)
                      . +| .+..+++|++|+|++
T Consensus       192 ~-l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         192 D-LR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             B-CG-GGTTCTTCSEEEEEE
T ss_pred             C-Ch-hhcCCCCCCEEEccC
Confidence            4 44 477778888888763

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.71  E-value=3.9e-17  Score=160.20  Aligned_cols=183  Identities=23%  Similarity=0.369  Sum_probs=113.7

Q ss_pred             cchhhhhccccccccCCccccccCCCCCcEEEccCCcccccCCcccccCCCCccEEEeeccccccccCccccCCCCCCeE
Q 045449          203 LPYLARLALATNNLVGVVPVTIFNMSALKEISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGTIPSSITNSSKLSDL  282 (823)
Q Consensus       203 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~lp~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  282 (823)
                      +.+...+.++.+.+++.++  ...+.++++|++++|.++ .++ .+. .+++|++|+|++|++++..|  +.++++|++|
T Consensus        17 l~~~i~~~l~~~~~~~~~~--~~~l~~l~~L~l~~~~i~-~l~-~l~-~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L   89 (199)
T d2omxa2          17 LAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIK-SID-GVE-YLNNLTQINFSNNQLTDITP--LKNLTKLVDI   89 (199)
T ss_dssp             HHHHHHHHTTCSSTTSEEC--HHHHTTCCEEECTTSCCC-CCT-TGG-GCTTCCEEECCSSCCCCCGG--GTTCTTCCEE
T ss_pred             HHHHHHHHhCCCCCCCccC--HHHhcCCCEEECCCCCCC-Ccc-ccc-cCCCcCcCccccccccCccc--ccCCcccccc
Confidence            4455566777887776543  345678888888888887 443 233 37777777777777775433  6777777777


Q ss_pred             EeecccccccCCCccCCCcccCcccccCccccCCCCcccccccccCCCCceEEEeecCCCCccCCccccccccccceEEe
Q 045449          283 ELGENLFSGFIPNTIGNLRNLEFGNIADNYLTSSTPELSFLSSLTNCKKLKVLIVTGNPLDGILPKSIGNFSLSLETILM  362 (823)
Q Consensus       283 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L  362 (823)
                      ++++|.+....  .+.++++|+.|++++|.+...       ..+..+++|+.|++++|++.                   
T Consensus        90 ~l~~n~~~~~~--~l~~l~~L~~L~l~~~~~~~~-------~~~~~l~~L~~L~l~~n~l~-------------------  141 (199)
T d2omxa2          90 LMNNNQIADIT--PLANLTNLTGLTLFNNQITDI-------DPLKNLTNLNRLELSSNTIS-------------------  141 (199)
T ss_dssp             ECCSSCCCCCG--GGTTCTTCSEEECCSSCCCCC-------GGGTTCTTCSEEECCSSCCC-------------------
T ss_pred             ccccccccccc--ccccccccccccccccccccc-------cccchhhhhHHhhhhhhhhc-------------------
Confidence            77777766432  356666666666666665543       12444555555555555443                   


Q ss_pred             cCCcceeccCccccCcccccEEEcccCcCCCCchhcccccCCCCEEEccCCCCCCcchHhhhcCCCCCEE
Q 045449          363 ANCSISGNIPQVVGNLSNLLVLELGGNNLTGPIPVTFSQLQTLQAFDLTRNKLAGPITDELCHLARLHSL  432 (823)
Q Consensus       363 ~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  432 (823)
                            . + ..+..+++|+.|++++|++++. + .++++++|++|++++|+++.. + .++++++|++|
T Consensus       142 ------~-~-~~l~~~~~L~~L~l~~n~l~~l-~-~l~~l~~L~~L~ls~N~i~~i-~-~l~~L~~L~~L  199 (199)
T d2omxa2         142 ------D-I-SALSGLTSLQQLNFSSNQVTDL-K-PLANLTTLERLDISSNKVSDI-S-VLAKLTNLESL  199 (199)
T ss_dssp             ------C-C-GGGTTCTTCSEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCCC-G-GGGGCTTCSEE
T ss_pred             ------c-c-ccccccccccccccccccccCC-c-cccCCCCCCEEECCCCCCCCC-c-cccCCCCCCcC
Confidence                  2 1 2345566667777777776643 2 266677777777777777642 3 35666666654

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=2.8e-16  Score=163.09  Aligned_cols=258  Identities=17%  Similarity=0.184  Sum_probs=131.3

Q ss_pred             hhccccccccCCccccccCCCCCcEEEccCCcccccCCcccccCCCCccEEEeeccccccc-cCccccCCCCCCeEEeec
Q 045449          208 RLALATNNLVGVVPVTIFNMSALKEISLLNNSLSGSLPSRIDLSLPNVETLNLGINSFSGT-IPSSITNSSKLSDLELGE  286 (823)
Q Consensus       208 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~lp~~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~Ls~  286 (823)
                      ++||+++.+.......+.. ..+..+.++...+...+.. .+ ...+|++|||+++.++.. ++..+..+++|++|+|++
T Consensus         4 ~lDLs~~~l~~~~l~~l~~-~~~~~lrl~~~~~~~~~~~-~~-~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~   80 (284)
T d2astb2           4 TLDLTGKNLHPDVTGRLLS-QGVIAFRCPRSFMDQPLAE-HF-SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEG   80 (284)
T ss_dssp             EEECTTCBCCHHHHHHHHH-TTCSEEECTTCEECSCCCS-CC-CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTT
T ss_pred             EEECCCCCCCchHHHHHHh-ccceEeeccccccccchhh-hc-cCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccc
Confidence            5677777664322222211 1344556665555422222 22 255778888887776543 344466777888888888


Q ss_pred             ccccccCCCccCCCcccCcccccCc-cccCCCCcccccccccCCCCceEEEeecC-CCCcc-CCccccccccccceEEec
Q 045449          287 NLFSGFIPNTIGNLRNLEFGNIADN-YLTSSTPELSFLSSLTNCKKLKVLIVTGN-PLDGI-LPKSIGNFSLSLETILMA  363 (823)
Q Consensus       287 N~l~~~~p~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~l~~L~~L~Ls~N-~l~~~-~p~~~~~~~~~L~~L~L~  363 (823)
                      +.+++..+..++.+++|++|+++++ .++...    +..-..++++|++|+++++ .++.. ++..+....+.|+.|+++
T Consensus        81 ~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~----l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~  156 (284)
T d2astb2          81 LRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFA----LQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLS  156 (284)
T ss_dssp             CBCCHHHHHHHTTCTTCSEEECTTCBSCCHHH----HHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECC
T ss_pred             cCCCcHHHHHHhcCCCCcCccccccccccccc----cchhhHHHHhccccccccccccccccchhhhcccccccchhhhc
Confidence            8777766677777777777777773 444220    1122345677777777764 33321 111222222344444444


Q ss_pred             CCcceeccCccccCcccccEEEcccCcCCCC-chhcccccCCCCEEEccCC-CCCCcchHhhhcCCCCCEEEccc-CcCc
Q 045449          364 NCSISGNIPQVVGNLSNLLVLELGGNNLTGP-IPVTFSQLQTLQAFDLTRN-KLAGPITDELCHLARLHSLVLQG-NKFS  440 (823)
Q Consensus       364 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~-~p~~~~~l~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~Ls~-N~l~  440 (823)
                      ++.                      +.++.. +...+..+++|++|++++| .+++.....+..+++|++|+|++ +.++
T Consensus       157 ~~~----------------------~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~  214 (284)
T d2astb2         157 GYR----------------------KNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDII  214 (284)
T ss_dssp             SCG----------------------GGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCC
T ss_pred             ccc----------------------cccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCC
Confidence            321                      122211 1122234455555555553 34444444555555566666655 3455


Q ss_pred             ccccccccCCCCCCeEeccCCccccccchhhhccCCCcEEeccccccccccCccccC
Q 045449          441 GSIPSCLGNLTSVRVLYLGLNIFTSVLSSTIWNLKDILFIDVSSNFLDGPLSLDIGN  497 (823)
Q Consensus       441 g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~~p~~~~~  497 (823)
                      +.....++++++|+.|+++++.-.+.++.....+++|   ++..++++...++.+++
T Consensus       215 ~~~l~~L~~~~~L~~L~l~~~~~d~~l~~l~~~lp~L---~i~~~~ls~~~~~~~~~  268 (284)
T d2astb2         215 PETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHL---QINCSHFTTIARPTIGN  268 (284)
T ss_dssp             GGGGGGGGGCTTCCEEECTTSSCTTCHHHHHHHSTTS---EESCCCSCCTTCSSCSS
T ss_pred             hHHHHHHhcCCCCCEEeeeCCCCHHHHHHHHHhCccc---cccCccCCCCCCCccCc
Confidence            4444555556666666666552112222222334443   34566666655555544

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.54  E-value=1.1e-15  Score=163.52  Aligned_cols=249  Identities=17%  Similarity=0.201  Sum_probs=143.3

Q ss_pred             CCCccEEEeeccccccc----cCccccCCCCCCeEEeecccccccC----------CCccCCCcccCcccccCccccCCC
Q 045449          252 LPNVETLNLGINSFSGT----IPSSITNSSKLSDLELGENLFSGFI----------PNTIGNLRNLEFGNIADNYLTSST  317 (823)
Q Consensus       252 l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~----------p~~~~~l~~L~~L~L~~N~l~~~~  317 (823)
                      ..+|+.|+|++|.+...    +-..+...++|+.|+++++......          ...+...++|+.|+|++|.++...
T Consensus        30 ~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~  109 (344)
T d2ca6a1          30 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA  109 (344)
T ss_dssp             CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred             CCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccccccccc
Confidence            56677777777776432    2334555667777777766443111          112233445555555555544321


Q ss_pred             CcccccccccCCCCceEEEeecCCCCccCCccccccccccceEEecCCcceeccCccccCcccccEEEcccCcCCCC---
Q 045449          318 PELSFLSSLTNCKKLKVLIVTGNPLDGILPKSIGNFSLSLETILMANCSISGNIPQVVGNLSNLLVLELGGNNLTGP---  394 (823)
Q Consensus       318 ~~~~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~---  394 (823)
                      .. .+...+..+++|+.|++++|.+...-...+..   .+..+.         ........+.|+.+++++|+++..   
T Consensus       110 ~~-~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~---~l~~~~---------~~~~~~~~~~L~~l~l~~n~i~~~~~~  176 (344)
T d2ca6a1         110 QE-PLIDFLSKHTPLEHLYLHNNGLGPQAGAKIAR---ALQELA---------VNKKAKNAPPLRSIICGRNRLENGSMK  176 (344)
T ss_dssp             HH-HHHHHHHHCTTCCEEECCSSCCHHHHHHHHHH---HHHHHH---------HHHHHHTCCCCCEEECCSSCCTGGGHH
T ss_pred             cc-chhhhhcccccchheecccccccccccccccc---cccccc---------cccccccCcccceeecccccccccccc
Confidence            10 12222334444555555554443110000100   000000         000112456788888888887632   


Q ss_pred             -chhcccccCCCCEEEccCCCCCCc-----chHhhhcCCCCCEEEcccCcCccc----ccccccCCCCCCeEeccCCccc
Q 045449          395 -IPVTFSQLQTLQAFDLTRNKLAGP-----ITDELCHLARLHSLVLQGNKFSGS----IPSCLGNLTSVRVLYLGLNIFT  464 (823)
Q Consensus       395 -~p~~~~~l~~L~~L~Ls~N~l~~~-----~p~~~~~l~~L~~L~Ls~N~l~g~----~p~~~~~l~~L~~L~Ls~N~l~  464 (823)
                       +...+...+.|+.|+|++|+++..     +...+..+++|+.|+|++|.++..    +...+..+++|++|+|++|.++
T Consensus       177 ~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~  256 (344)
T d2ca6a1         177 EWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLS  256 (344)
T ss_dssp             HHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCC
T ss_pred             cccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccC
Confidence             233455677888888888888742     223356678888999998888643    3455677888999999999887


Q ss_pred             cccchhh----hc--cCCCcEEeccccccccc----cCcccc-CCCCCcEEEcccCCCCC
Q 045449          465 SVLSSTI----WN--LKDILFIDVSSNFLDGP----LSLDIG-NLKVVIGLDFSRNNLSG  513 (823)
Q Consensus       465 ~~~p~~~----~~--l~~L~~LdLs~N~l~g~----~p~~~~-~l~~L~~L~ls~N~l~g  513 (823)
                      +.-...+    ..  ...|+.||+++|.++..    +...+. +++.|+.|++++|+++.
T Consensus       257 ~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         257 ARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             HHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             chhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence            7544333    22  35788999999988753    233342 56789999999998873

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.51  E-value=3.1e-14  Score=127.22  Aligned_cols=101  Identities=23%  Similarity=0.325  Sum_probs=52.1

Q ss_pred             EEEcccCcCCCCchhcccccCCCCEEEccCCCCCCcchHhhhcCCCCCEEEcccCcCcccccccccCCCCCCeEeccCCc
Q 045449          383 VLELGGNNLTGPIPVTFSQLQTLQAFDLTRNKLAGPITDELCHLARLHSLVLQGNKFSGSIPSCLGNLTSVRVLYLGLNI  462 (823)
Q Consensus       383 ~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~  462 (823)
                      +|||++|+++ .++ .+..+++|++|++++|+|+ .+|..++.+++|+.|++++|.|++ +| .++.+++|+.|++++|+
T Consensus         2 ~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~~N~   76 (124)
T d1dcea3           2 VLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNR   76 (124)
T ss_dssp             EEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSC
T ss_pred             EEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhcccccccccccccc-cC-ccccccccCeEECCCCc
Confidence            4555555554 233 2455555555555555555 234445555555555555555553 22 25555555555555555


Q ss_pred             cccccc-hhhhccCCCcEEeccccccc
Q 045449          463 FTSVLS-STIWNLKDILFIDVSSNFLD  488 (823)
Q Consensus       463 l~~~~p-~~~~~l~~L~~LdLs~N~l~  488 (823)
                      ++.... ..++.+++|+.|++++|+++
T Consensus        77 i~~~~~~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          77 LQQSAAIQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             CCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             cCCCCCchhhcCCCCCCEEECCCCcCC
Confidence            554322 34555555555555555554

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=6.6e-15  Score=152.52  Aligned_cols=191  Identities=18%  Similarity=0.208  Sum_probs=128.4

Q ss_pred             ccCCCCceEEEeecCCCCccCCccccccccccceEEecCC-cceec-cCccccCcccccEEEcccC-cCCCC-chhcccc
Q 045449          326 LTNCKKLKVLIVTGNPLDGILPKSIGNFSLSLETILMANC-SISGN-IPQVVGNLSNLLVLELGGN-NLTGP-IPVTFSQ  401 (823)
Q Consensus       326 l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~L~~L~L~~N-~l~~~-~p~~~~~l~~L~~L~Ls~N-~l~g~-~p~~~~~  401 (823)
                      +..+++|++|+|+++.+++..+..++.+ ++|++|+++++ .++.. +...+.++++|++|+++++ +++.. +...+..
T Consensus        67 ~~~c~~L~~L~L~~~~l~~~~~~~l~~~-~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~  145 (284)
T d2astb2          67 LSQCSKLQNLSLEGLRLSDPIVNTLAKN-SNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAH  145 (284)
T ss_dssp             HTTBCCCSEEECTTCBCCHHHHHHHTTC-TTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHH
T ss_pred             HHhCCCcccccccccCCCcHHHHHHhcC-CCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcc
Confidence            4445555555555555555445555554 45666666663 44422 1223456789999999985 45432 2233333


Q ss_pred             -cCCCCEEEccCC--CCCCc-chHhhhcCCCCCEEEcccC-cCcccccccccCCCCCCeEeccC-CccccccchhhhccC
Q 045449          402 -LQTLQAFDLTRN--KLAGP-ITDELCHLARLHSLVLQGN-KFSGSIPSCLGNLTSVRVLYLGL-NIFTSVLSSTIWNLK  475 (823)
Q Consensus       402 -l~~L~~L~Ls~N--~l~~~-~p~~~~~l~~L~~L~Ls~N-~l~g~~p~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~  475 (823)
                       .++|+.|++++.  .++.. +...+.++++|++|++++| .+++..+..+.++++|++|+|++ +.+++.....+++++
T Consensus       146 ~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~  225 (284)
T d2astb2         146 VSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIP  225 (284)
T ss_dssp             SCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCT
T ss_pred             cccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCC
Confidence             478999999975  45533 3333467899999999986 58888888999999999999999 578888888899999


Q ss_pred             CCcEEeccccccccccCccccCCCCCcEEEcccCCCCCCCCCccc
Q 045449          476 DILFIDVSSNFLDGPLSLDIGNLKVVIGLDFSRNNLSGDIPITIG  520 (823)
Q Consensus       476 ~L~~LdLs~N~l~g~~p~~~~~l~~L~~L~ls~N~l~g~ip~~~~  520 (823)
                      +|+.|+++++--.+.++.-...++.   |++..+++++..+.+++
T Consensus       226 ~L~~L~l~~~~~d~~l~~l~~~lp~---L~i~~~~ls~~~~~~~~  267 (284)
T d2astb2         226 TLKTLQVFGIVPDGTLQLLKEALPH---LQINCSHFTTIARPTIG  267 (284)
T ss_dssp             TCCEEECTTSSCTTCHHHHHHHSTT---SEESCCCSCCTTCSSCS
T ss_pred             CCCEEeeeCCCCHHHHHHHHHhCcc---ccccCccCCCCCCCccC
Confidence            9999999988322233322334555   55688899977666664

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=1.4e-14  Score=136.24  Aligned_cols=106  Identities=17%  Similarity=0.168  Sum_probs=48.4

Q ss_pred             ccceEEecCCcceeccCccccCcccccEEEcccCcCCCCchhcccccCCCCEEEccCCCCCCcchHhhhcCCCCCEEEcc
Q 045449          356 SLETILMANCSISGNIPQVVGNLSNLLVLELGGNNLTGPIPVTFSQLQTLQAFDLTRNKLAGPITDELCHLARLHSLVLQ  435 (823)
Q Consensus       356 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls  435 (823)
                      .+++|+|++|+|+.. +..+..+++|++|||++|+++ .++ .|..+++|++|++++|+++...+..+..+++|+.|+++
T Consensus        19 ~lr~L~L~~n~I~~i-~~~~~~l~~L~~L~Ls~N~i~-~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~   95 (162)
T d1a9na_          19 RDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIR-KLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILT   95 (162)
T ss_dssp             SCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCC-EEC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECC
T ss_pred             cCcEEECCCCCCCcc-CccccccccCCEEECCCCCCC-ccC-CcccCcchhhhhcccccccCCCccccccccccccceec
Confidence            445555555555432 333444455555555555554 222 24445555555555555543333333444555555555


Q ss_pred             cCcCccccc-ccccCCCCCCeEeccCCccc
Q 045449          436 GNKFSGSIP-SCLGNLTSVRVLYLGLNIFT  464 (823)
Q Consensus       436 ~N~l~g~~p-~~~~~l~~L~~L~Ls~N~l~  464 (823)
                      +|+++.... ..+..+++|+.|++++|.++
T Consensus        96 ~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~  125 (162)
T d1a9na_          96 NNSLVELGDLDPLASLKSLTYLCILRNPVT  125 (162)
T ss_dssp             SCCCCCGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred             cccccccccccccccccccchhhcCCCccc
Confidence            555442111 23444444444444444443

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.49  E-value=3.3e-15  Score=159.67  Aligned_cols=248  Identities=17%  Similarity=0.178  Sum_probs=138.3

Q ss_pred             cccccCCCCCcEEEccCCcccccCCccc---ccCCCCccEEEeeccccccc----------cCccccCCCCCCeEEeecc
Q 045449          221 PVTIFNMSALKEISLLNNSLSGSLPSRI---DLSLPNVETLNLGINSFSGT----------IPSSITNSSKLSDLELGEN  287 (823)
Q Consensus       221 p~~~~~l~~L~~L~Ls~N~l~g~lp~~~---~~~l~~L~~L~Ls~N~l~~~----------~p~~~~~l~~L~~L~Ls~N  287 (823)
                      ...+.+...|++|+|++|.++..-...+   ....++|+.|+++.+.+...          +...+...++|+.|+|++|
T Consensus        24 ~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n  103 (344)
T d2ca6a1          24 FAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN  103 (344)
T ss_dssp             SHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC
T ss_pred             HHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccc
Confidence            3456678899999999999864322222   12378999999998765421          2234566789999999999


Q ss_pred             ccccc----CCCccCCCcccCcccccCccccCCCCcc--------cccccccCCCCceEEEeecCCCCccCCcccccccc
Q 045449          288 LFSGF----IPNTIGNLRNLEFGNIADNYLTSSTPEL--------SFLSSLTNCKKLKVLIVTGNPLDGILPKSIGNFSL  355 (823)
Q Consensus       288 ~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~~~~~--------~~~~~l~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~  355 (823)
                      .++..    +...+...++|+.|++++|.+.......        .........+.|+.+++++|.+....-..      
T Consensus       104 ~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~------  177 (344)
T d2ca6a1         104 AFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKE------  177 (344)
T ss_dssp             CCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHH------
T ss_pred             ccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeeccccccccccccc------
Confidence            98764    3334556789999999999875321100        00011134566777777777665321111      


Q ss_pred             ccceEEecCCcceeccCccccCcccccEEEcccCcCCCC-----chhcccccCCCCEEEccCCCCCCc----chHhhhcC
Q 045449          356 SLETILMANCSISGNIPQVVGNLSNLLVLELGGNNLTGP-----IPVTFSQLQTLQAFDLTRNKLAGP----ITDELCHL  426 (823)
Q Consensus       356 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~-----~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l  426 (823)
                                     +...+...+.|+.|+|++|+++..     +...+...++|+.|+|++|.++..    +...+..+
T Consensus       178 ---------------l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~  242 (344)
T d2ca6a1         178 ---------------WAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSW  242 (344)
T ss_dssp             ---------------HHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGC
T ss_pred             ---------------ccchhhhhhhhcccccccccccccccccchhhhhcchhhhccccccccccccccccccccccccc
Confidence                           111223334455555555554421     122234445555555555555422    22334455


Q ss_pred             CCCCEEEcccCcCccccccc----cc--CCCCCCeEeccCCcccccc----chhhh-ccCCCcEEecccccccc
Q 045449          427 ARLHSLVLQGNKFSGSIPSC----LG--NLTSVRVLYLGLNIFTSVL----SSTIW-NLKDILFIDVSSNFLDG  489 (823)
Q Consensus       427 ~~L~~L~Ls~N~l~g~~p~~----~~--~l~~L~~L~Ls~N~l~~~~----p~~~~-~l~~L~~LdLs~N~l~g  489 (823)
                      ++|++|+|++|.+++.....    +.  ..+.|++|++++|.++..-    ...+. +.+.|+.|+|++|.+..
T Consensus       243 ~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         243 PNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             TTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             ccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence            55555566555555332221    21  1245666666666665432    22232 45667777777777653

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=4.2e-14  Score=132.80  Aligned_cols=109  Identities=19%  Similarity=0.227  Sum_probs=49.5

Q ss_pred             CcccccEEEcccCcCCCCchhcccccCCCCEEEccCCCCCCcchHhhhcCCCCCEEEcccCcCcccccccccCCCCCCeE
Q 045449          377 NLSNLLVLELGGNNLTGPIPVTFSQLQTLQAFDLTRNKLAGPITDELCHLARLHSLVLQGNKFSGSIPSCLGNLTSVRVL  456 (823)
Q Consensus       377 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L  456 (823)
                      ++.+|++|||++|+++ .++..+..+++|++|+|++|+|+. ++ .|..+++|++|++++|+++...+..+..+++|+.|
T Consensus        16 n~~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~~-l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L   92 (162)
T d1a9na_          16 NAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRK-LD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL   92 (162)
T ss_dssp             CTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCE-EC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred             CcCcCcEEECCCCCCC-ccCccccccccCCEEECCCCCCCc-cC-CcccCcchhhhhcccccccCCCccccccccccccc
Confidence            3444455555555554 233333444455555555555442 21 24444455555555555543333333444455555


Q ss_pred             eccCCccccccc-hhhhccCCCcEEeccccccc
Q 045449          457 YLGLNIFTSVLS-STIWNLKDILFIDVSSNFLD  488 (823)
Q Consensus       457 ~Ls~N~l~~~~p-~~~~~l~~L~~LdLs~N~l~  488 (823)
                      ++++|+++.... ..+..+++|++|++++|.++
T Consensus        93 ~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~  125 (162)
T d1a9na_          93 ILTNNSLVELGDLDPLASLKSLTYLCILRNPVT  125 (162)
T ss_dssp             ECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred             eeccccccccccccccccccccchhhcCCCccc
Confidence            555554443211 23444455555555555443

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.48  E-value=5.5e-15  Score=143.55  Aligned_cols=119  Identities=24%  Similarity=0.192  Sum_probs=85.1

Q ss_pred             ccceeeccC-----------CeEEEEEEehHhh------------------HHHHHHHHHHHHHHhhcchhhHHH-----
Q 045449          632 ENNLIGIGN-----------GMEVAVKVFHQQY------------------ERALKSFEDECEVRKRIRHRNLVK-----  677 (823)
Q Consensus       632 ~~~~lg~g~-----------~~~vavK~~~~~~------------------~~~~~~~~~E~~~l~~l~h~niv~-----  677 (823)
                      ..+.||+|+           |..||||+++...                  ......+.+|...+.++.|.+++.     
T Consensus         4 vg~~IG~G~~g~Vy~a~~~~g~~vAvKi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~v~~~~~~~   83 (191)
T d1zara2           4 IGKLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQGLAVPKVYAWE   83 (191)
T ss_dssp             EEEEEEECSSEEEEEEEETTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTTTSSSCCEEEEE
T ss_pred             hCCEeeeCcceEEEEEECCCCCEEEEEEEecccchhhhhhhhhhhccHHHHHHHHHHHHHHHHHHHHccCCCcceEEEec
Confidence            456777775           6789999875221                  112345667888888888877765     


Q ss_pred             ------------------------HHHHHHHHhhhcCCCCEEeccCCCCCEEeCCCCcEEEeecccccccCCCCcccccc
Q 045449          678 ------------------------IISSSLEYLHFGHSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKLLSGEDQLSKQT  733 (823)
Q Consensus       678 ------------------------~~~~~l~~L~~~h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~~~~~~~~~~~~  733 (823)
                                              ++.|++++++++|+.||+||||||+|||+++++ ++++|||.|+....+...    
T Consensus        84 ~~~lvme~~~~~~~~~l~~~~~~~i~~ql~~~l~~lH~~giiHrDiKP~NILv~~~~-~~liDFG~a~~~~~~~~~----  158 (191)
T d1zara2          84 GNAVLMELIDAKELYRVRVENPDEVLDMILEEVAKFYHRGIVHGDLSQYNVLVSEEG-IWIIDFPQSVEVGEEGWR----  158 (191)
T ss_dssp             TTEEEEECCCCEEGGGCCCSCHHHHHHHHHHHHHHHHHTTEECSCCSTTSEEEETTE-EEECCCTTCEETTSTTHH----
T ss_pred             CCEEEEEeeccccccchhhHHHHHHHHHHHHHHHHHhhCCEEEccCChhheeeeCCC-EEEEECCCcccCCCCCcH----
Confidence                                    578999999999999999999999999999654 899999999765422110    


Q ss_pred             ccccCCCcCc------ccccCCCccccccceehhh
Q 045449          734 QTLATIGYMA------PEYGTKGRVSTRGDVCSFG  762 (823)
Q Consensus       734 ~~~gt~~y~a------PE~~~~~~~~~~~Dv~S~G  762 (823)
                            .|..      .|. ....|+.++|+||..
T Consensus       159 ------~~l~rd~~~~~~~-f~r~y~~~~d~~s~~  186 (191)
T d1zara2         159 ------EILERDVRNIITY-FSRTYRTEKDINSAI  186 (191)
T ss_dssp             ------HHHHHHHHHHHHH-HHHHHCCCCCHHHHH
T ss_pred             ------HHHHHHHHHHHHH-HcCCCCCcccHHHHH
Confidence                  0111      111 135688999999974

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.47  E-value=1.3e-13  Score=123.00  Aligned_cols=118  Identities=20%  Similarity=0.233  Sum_probs=81.5

Q ss_pred             ceEEecCCcceeccCccccCcccccEEEcccCcCCCCchhcccccCCCCEEEccCCCCCCcchHhhhcCCCCCEEEcccC
Q 045449          358 ETILMANCSISGNIPQVVGNLSNLLVLELGGNNLTGPIPVTFSQLQTLQAFDLTRNKLAGPITDELCHLARLHSLVLQGN  437 (823)
Q Consensus       358 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N  437 (823)
                      ++|+|++|+++. ++ .+..+++|++||+++|+|+ .+|..++.+++|++|++++|+|++. | .+..+++|+.|++++|
T Consensus         1 R~L~Ls~n~l~~-l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~l-~-~~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           1 RVLHLAHKDLTV-LC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENV-D-GVANLPRLQELLLCNN   75 (124)
T ss_dssp             SEEECTTSCCSS-CC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCC-G-GGTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCCCC-Cc-ccccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccccc-C-ccccccccCeEECCCC
Confidence            356666676663 33 3677778888888888887 4666677788888888888888743 3 3777888888888888


Q ss_pred             cCcccc-cccccCCCCCCeEeccCCccccc---cchhhhccCCCcEE
Q 045449          438 KFSGSI-PSCLGNLTSVRVLYLGLNIFTSV---LSSTIWNLKDILFI  480 (823)
Q Consensus       438 ~l~g~~-p~~~~~l~~L~~L~Ls~N~l~~~---~p~~~~~l~~L~~L  480 (823)
                      +++... ...++.+++|+.|++++|.++..   .......+++|+.|
T Consensus        76 ~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          76 RLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             CCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             ccCCCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            887443 24577788888888888887653   22334455666554

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.32  E-value=2.4e-14  Score=139.36  Aligned_cols=126  Identities=23%  Similarity=0.278  Sum_probs=55.0

Q ss_pred             ccCcccccEEEcccCcCCCCchhcccccCCCCEEEccCCCCCCcchHhhhcCCCCCEEEcccCcCcccccccccCCCCCC
Q 045449          375 VGNLSNLLVLELGGNNLTGPIPVTFSQLQTLQAFDLTRNKLAGPITDELCHLARLHSLVLQGNKFSGSIPSCLGNLTSVR  454 (823)
Q Consensus       375 ~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~  454 (823)
                      +..+++|++|+|++|+++ .++ .+..+++|++|+|++|+|+ .+|..+..+++|+.|++++|+++. + +.+..+++|+
T Consensus        44 l~~L~~L~~L~Ls~n~I~-~i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~-l-~~~~~l~~L~  118 (198)
T d1m9la_          44 LSTLKACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-L-SGIEKLVNLR  118 (198)
T ss_dssp             HHHTTTCCEEECSEEEES-CCC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCC-H-HHHHHHHHSS
T ss_pred             HhcccccceeECcccCCC-Ccc-cccCCccccChhhcccccc-cccccccccccccccccccccccc-c-cccccccccc
Confidence            334444444444444444 222 2444444444444444444 223222333344444444444442 1 1234444444


Q ss_pred             eEeccCCccccccc-hhhhccCCCcEEeccccccccccCcc----------ccCCCCCcEEE
Q 045449          455 VLYLGLNIFTSVLS-STIWNLKDILFIDVSSNFLDGPLSLD----------IGNLKVVIGLD  505 (823)
Q Consensus       455 ~L~Ls~N~l~~~~p-~~~~~l~~L~~LdLs~N~l~g~~p~~----------~~~l~~L~~L~  505 (823)
                      .|++++|+++.... ..+..+++|+.|+|++|++....+..          +..+++|+.||
T Consensus       119 ~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         119 VLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             EEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             ccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            45554444444221 23444555555555555544333221          44566666665

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.30  E-value=8.4e-14  Score=135.46  Aligned_cols=128  Identities=20%  Similarity=0.247  Sum_probs=75.5

Q ss_pred             ccccccccccceEEecCCcceeccCccccCcccccEEEcccCcCCCCchhcccccCCCCEEEccCCCCCCcchHhhhcCC
Q 045449          348 KSIGNFSLSLETILMANCSISGNIPQVVGNLSNLLVLELGGNNLTGPIPVTFSQLQTLQAFDLTRNKLAGPITDELCHLA  427 (823)
Q Consensus       348 ~~~~~~~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~  427 (823)
                      ..+..+ .+|++|+|++|+|+. ++ .+.++++|++|+|++|+++ .+|..+..+++|++|++++|+++..  ..+..++
T Consensus        42 ~sl~~L-~~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~l--~~~~~l~  115 (198)
T d1m9la_          42 ATLSTL-KACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASL--SGIEKLV  115 (198)
T ss_dssp             HHHHHT-TTCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCCH--HHHHHHH
T ss_pred             hHHhcc-cccceeECcccCCCC-cc-cccCCccccChhhcccccc-ccccccccccccccccccccccccc--ccccccc
Confidence            344444 455556666555553 22 3556666666666666665 3444444455666666666666632  2355666


Q ss_pred             CCCEEEcccCcCccccc-ccccCCCCCCeEeccCCccccccch----------hhhccCCCcEEe
Q 045449          428 RLHSLVLQGNKFSGSIP-SCLGNLTSVRVLYLGLNIFTSVLSS----------TIWNLKDILFID  481 (823)
Q Consensus       428 ~L~~L~Ls~N~l~g~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~----------~~~~l~~L~~Ld  481 (823)
                      +|+.|+|++|+++.... ..+..+++|+.|+|++|.++...+.          .+..+++|+.||
T Consensus       116 ~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         116 NLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             HSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             cccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            66667776666663221 3466666777777777766554332          256788888887

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=7.5e-12  Score=116.32  Aligned_cols=91  Identities=19%  Similarity=0.118  Sum_probs=39.7

Q ss_pred             CccccCcccccEEEcccC-cCCCCchhcccccCCCCEEEccCCCCCCcchHhhhcCCCCCEEEcccCcCcccccccccCC
Q 045449          372 PQVVGNLSNLLVLELGGN-NLTGPIPVTFSQLQTLQAFDLTRNKLAGPITDELCHLARLHSLVLQGNKFSGSIPSCLGNL  450 (823)
Q Consensus       372 p~~~~~l~~L~~L~Ls~N-~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l  450 (823)
                      |..+..+++|++|++++| .++...+..|.++++|+.|+|++|+|+...+..|..+++|++|+|++|+|+...+..|.. 
T Consensus        24 p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~-  102 (156)
T d2ifga3          24 LHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQG-  102 (156)
T ss_dssp             TTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCS-
T ss_pred             cccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCcccChhhhcc-
Confidence            333444444444444433 244333334444444555555555444444444444444444444444444222222222 


Q ss_pred             CCCCeEeccCCcc
Q 045449          451 TSVRVLYLGLNIF  463 (823)
Q Consensus       451 ~~L~~L~Ls~N~l  463 (823)
                      .+|+.|+|++|.+
T Consensus       103 ~~l~~L~L~~Np~  115 (156)
T d2ifga3         103 LSLQELVLSGNPL  115 (156)
T ss_dssp             CCCCEEECCSSCC
T ss_pred             ccccccccCCCcc
Confidence            2344444444444

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=1.1e-11  Score=115.14  Aligned_cols=110  Identities=15%  Similarity=0.078  Sum_probs=75.6

Q ss_pred             CcccccEEEcccCcCCCCchhcccccCCCCEEEccCC-CCCCcchHhhhcCCCCCEEEcccCcCcccccccccCCCCCCe
Q 045449          377 NLSNLLVLELGGNNLTGPIPVTFSQLQTLQAFDLTRN-KLAGPITDELCHLARLHSLVLQGNKFSGSIPSCLGNLTSVRV  455 (823)
Q Consensus       377 ~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~  455 (823)
                      .+.....++.+++++. .+|..+..+++|+.|++++| .++...+..|.++++|+.|+|++|+|+...|..|..+++|++
T Consensus         6 ~c~~~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~   84 (156)
T d2ifga3           6 CPHGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSR   84 (156)
T ss_dssp             CCSSSSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCE
T ss_pred             CcCCCCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccc
Confidence            3444566777877776 56667777778888888655 477665666777777777777777777666777777777777


Q ss_pred             EeccCCccccccchhhhccCCCcEEeccccccc
Q 045449          456 LYLGLNIFTSVLSSTIWNLKDILFIDVSSNFLD  488 (823)
Q Consensus       456 L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~  488 (823)
                      |+|++|+|+...+..+.. ..|+.|+|++|.+.
T Consensus        85 L~Ls~N~l~~l~~~~~~~-~~l~~L~L~~Np~~  116 (156)
T d2ifga3          85 LNLSFNALESLSWKTVQG-LSLQELVLSGNPLH  116 (156)
T ss_dssp             EECCSSCCSCCCSTTTCS-CCCCEEECCSSCCC
T ss_pred             eeccCCCCcccChhhhcc-ccccccccCCCccc
Confidence            777777777644444433 35666666666664

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.52  E-value=5.4e-09  Score=97.24  Aligned_cols=83  Identities=17%  Similarity=0.099  Sum_probs=44.2

Q ss_pred             hhcCCCCCEEEcccCcCccc--ccccccCCCCCCeEeccCCccccccchhhhccCCCcEEeccccccccccCc-------
Q 045449          423 LCHLARLHSLVLQGNKFSGS--IPSCLGNLTSVRVLYLGLNIFTSVLSSTIWNLKDILFIDVSSNFLDGPLSL-------  493 (823)
Q Consensus       423 ~~~l~~L~~L~Ls~N~l~g~--~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~~p~-------  493 (823)
                      +..+++|++|+|++|+|+..  ++..+..+++|+.|+|++|.++...+-.......|+.|++++|.++.....       
T Consensus        61 ~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~  140 (162)
T d1koha1          61 EENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISA  140 (162)
T ss_dssp             HHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHH
T ss_pred             HHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHH
Confidence            34455555555555555532  223345555666666666666554443333444566666666666554332       


Q ss_pred             cccCCCCCcEEE
Q 045449          494 DIGNLKVVIGLD  505 (823)
Q Consensus       494 ~~~~l~~L~~L~  505 (823)
                      .+..+++|+.||
T Consensus       141 i~~~~P~L~~LD  152 (162)
T d1koha1         141 IRERFPKLLRLD  152 (162)
T ss_dssp             HHTTSTTCCEET
T ss_pred             HHHHCCCCCEEC
Confidence            144566666665

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.45  E-value=1.1e-08  Score=94.99  Aligned_cols=86  Identities=16%  Similarity=0.161  Sum_probs=48.6

Q ss_pred             hhcccccCCCCEEEccCCCCCCcc--hHhhhcCCCCCEEEcccCcCcccccccccCCCCCCeEeccCCccccccc-----
Q 045449          396 PVTFSQLQTLQAFDLTRNKLAGPI--TDELCHLARLHSLVLQGNKFSGSIPSCLGNLTSVRVLYLGLNIFTSVLS-----  468 (823)
Q Consensus       396 p~~~~~l~~L~~L~Ls~N~l~~~~--p~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~l~~L~~L~Ls~N~l~~~~p-----  468 (823)
                      +..+..+++|++|+|++|+|+...  +..+..+++|+.|+|++|.++...+-.+.....|+.|++++|.++....     
T Consensus        58 ~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y  137 (162)
T d1koha1          58 RIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTY  137 (162)
T ss_dssp             HHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHH
T ss_pred             HHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhH
Confidence            333445566666666666665432  2335556666666666666664333233334456667777776665433     


Q ss_pred             --hhhhccCCCcEEe
Q 045449          469 --STIWNLKDILFID  481 (823)
Q Consensus       469 --~~~~~l~~L~~Ld  481 (823)
                        ..+..+++|+.||
T Consensus       138 ~~~i~~~~P~L~~LD  152 (162)
T d1koha1         138 ISAIRERFPKLLRLD  152 (162)
T ss_dssp             HHHHHTTSTTCCEET
T ss_pred             HHHHHHHCCCCCEEC
Confidence              2355677777776

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.76  E-value=1.9e-05  Score=72.97  Aligned_cols=108  Identities=9%  Similarity=0.095  Sum_probs=53.1

Q ss_pred             cccccEEEcccC-cCCCC----chhcccccCCCCEEEccCCCCCCc----chHhhhcCCCCCEEEcccCcCcccc----c
Q 045449          378 LSNLLVLELGGN-NLTGP----IPVTFSQLQTLQAFDLTRNKLAGP----ITDELCHLARLHSLVLQGNKFSGSI----P  444 (823)
Q Consensus       378 l~~L~~L~Ls~N-~l~g~----~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~g~~----p  444 (823)
                      .++|++|+|+++ .++..    +-..+...++|++|+|++|.+...    +...+...+.|+.|+|++|.++...    -
T Consensus        14 ~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~   93 (167)
T d1pgva_          14 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL   93 (167)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred             CCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHH
Confidence            455666666653 34321    122344455666666666666522    2222334456666666666665321    1


Q ss_pred             ccccCCCCCCeEeccCCccccc-------cchhhhccCCCcEEecccc
Q 045449          445 SCLGNLTSVRVLYLGLNIFTSV-------LSSTIWNLKDILFIDVSSN  485 (823)
Q Consensus       445 ~~~~~l~~L~~L~Ls~N~l~~~-------~p~~~~~l~~L~~LdLs~N  485 (823)
                      ..+...++|++|+|++|.+...       +...+..-+.|+.|+++.+
T Consensus        94 ~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~  141 (167)
T d1pgva_          94 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA  141 (167)
T ss_dssp             HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             HHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCC
Confidence            2344455666666666544321       2233334455555555544

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.58  E-value=3.1e-05  Score=71.43  Aligned_cols=111  Identities=14%  Similarity=0.187  Sum_probs=78.2

Q ss_pred             cccCCCCEEEccCC-CCCCc----chHhhhcCCCCCEEEcccCcCcccc----cccccCCCCCCeEeccCCccccccc--
Q 045449          400 SQLQTLQAFDLTRN-KLAGP----ITDELCHLARLHSLVLQGNKFSGSI----PSCLGNLTSVRVLYLGLNIFTSVLS--  468 (823)
Q Consensus       400 ~~l~~L~~L~Ls~N-~l~~~----~p~~~~~l~~L~~L~Ls~N~l~g~~----p~~~~~l~~L~~L~Ls~N~l~~~~p--  468 (823)
                      .+.++|+.|+|+++ .++..    +-..+...+.|++|+|++|.+....    ...+...+.|+.|+|++|.++..-.  
T Consensus        12 ~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~   91 (167)
T d1pgva_          12 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR   91 (167)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             hCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHH
Confidence            34688999999974 56533    2234566788999999999987432    2345567889999999999886433  


Q ss_pred             --hhhhccCCCcEEeccccccccc-------cCccccCCCCCcEEEcccCC
Q 045449          469 --STIWNLKDILFIDVSSNFLDGP-------LSLDIGNLKVVIGLDFSRNN  510 (823)
Q Consensus       469 --~~~~~l~~L~~LdLs~N~l~g~-------~p~~~~~l~~L~~L~ls~N~  510 (823)
                        ..+...+.|+.|++++|.+...       +...+..-+.|+.|+++.+.
T Consensus        92 l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_          92 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCC
Confidence              3455667899999998865531       34455566888888886653

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.09  E-value=0.00011  Score=67.49  Aligned_cols=111  Identities=18%  Similarity=0.170  Sum_probs=55.5

Q ss_pred             cCcccccEEEccc-CcCCCC----chhcccccCCCCEEEccCCCCCCcchH----hhhcCCCCCEEEcccCcCccc----
Q 045449          376 GNLSNLLVLELGG-NNLTGP----IPVTFSQLQTLQAFDLTRNKLAGPITD----ELCHLARLHSLVLQGNKFSGS----  442 (823)
Q Consensus       376 ~~l~~L~~L~Ls~-N~l~g~----~p~~~~~l~~L~~L~Ls~N~l~~~~p~----~~~~l~~L~~L~Ls~N~l~g~----  442 (823)
                      .+.++|++|+|++ +.++..    +-..+...++|+.|+|++|.++...-.    .+...++++.+++++|.+...    
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~   93 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA   93 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHH
Confidence            3455666666665 345421    222344556666667776666543222    233456666666666666432    


Q ss_pred             ccccccCCCCCCeEec--cCCcccc----ccchhhhccCCCcEEeccccc
Q 045449          443 IPSCLGNLTSVRVLYL--GLNIFTS----VLSSTIWNLKDILFIDVSSNF  486 (823)
Q Consensus       443 ~p~~~~~l~~L~~L~L--s~N~l~~----~~p~~~~~l~~L~~LdLs~N~  486 (823)
                      +-..+...++|+.++|  +.|.+..    .+...+...+.|+.|+++.|.
T Consensus        94 l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_          94 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             HHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCC
Confidence            1233445555655433  3445533    223334445555555555443

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.84  E-value=0.00034  Score=63.98  Aligned_cols=113  Identities=11%  Similarity=0.151  Sum_probs=82.3

Q ss_pred             ccccCCCCEEEccC-CCCCCcc----hHhhhcCCCCCEEEcccCcCcccc----cccccCCCCCCeEeccCCcccccc--
Q 045449          399 FSQLQTLQAFDLTR-NKLAGPI----TDELCHLARLHSLVLQGNKFSGSI----PSCLGNLTSVRVLYLGLNIFTSVL--  467 (823)
Q Consensus       399 ~~~l~~L~~L~Ls~-N~l~~~~----p~~~~~l~~L~~L~Ls~N~l~g~~----p~~~~~l~~L~~L~Ls~N~l~~~~--  467 (823)
                      ..+.++|++|+|++ |.++...    -..+...+.|++|+|++|.++...    -..+...++++.+++++|.++...  
T Consensus        13 ~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~   92 (166)
T d1io0a_          13 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL   92 (166)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred             HhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHH
Confidence            45678999999998 5676432    233457889999999999987542    234566789999999999987643  


Q ss_pred             --chhhhccCCCcE--Eecccccccc----ccCccccCCCCCcEEEcccCCC
Q 045449          468 --SSTIWNLKDILF--IDVSSNFLDG----PLSLDIGNLKVVIGLDFSRNNL  511 (823)
Q Consensus       468 --p~~~~~l~~L~~--LdLs~N~l~g----~~p~~~~~l~~L~~L~ls~N~l  511 (823)
                        -..+...+.|+.  |++++|.+..    .+...+...+.|+.|+++.++.
T Consensus        93 ~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_          93 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCCC
Confidence              345667788886  4556788865    3445566788999999877653

>d2ppqa1 d.144.1.6 (A:5-320) Homoserine kinase ThrB {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Homoserine kinase ThrB
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=92.73  E-value=0.029  Score=56.29  Aligned_cols=32  Identities=31%  Similarity=0.358  Sum_probs=28.5

Q ss_pred             CCCEEeccCCCCCEEeCCCCcEEEeecccccc
Q 045449          691 SIPIIHCDLKPSNVLLDEDMVAHISDFGIAKL  722 (823)
Q Consensus       691 ~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~  722 (823)
                      ..|+||+|+.+.||+++++...-|.||+.|..
T Consensus       182 ~~giIHgDl~~dNvl~~~~~v~gvIDF~~~~~  213 (316)
T d2ppqa1         182 PAGVIHADLFQDNVFFLGDELSGLIDFYFACN  213 (316)
T ss_dssp             CEEEECSCCCGGGEEEETTEEEEECCCTTCEE
T ss_pred             ccccccCCcchhhhhcccccceeEeccccccc
Confidence            46899999999999999988888999998764

>d1zyla1 d.144.1.6 (A:4-328) RdoA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: RdoA
species: Escherichia coli [TaxId: 562]

Probab=88.55  E-value=0.11  Score=52.17  Aligned_cols=30  Identities=20%  Similarity=0.313  Sum_probs=24.6

Q ss_pred             CCCEEeccCCCCCEEeCCCCcEEEeecccccc
Q 045449          691 SIPIIHCDLKPSNVLLDEDMVAHISDFGIAKL  722 (823)
Q Consensus       691 ~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~  722 (823)
                      ..+++|+|+.+.|||++++  ..++||+-+..
T Consensus       191 p~~liHgDlh~~NvL~~~~--~~~IDFdd~~~  220 (325)
T d1zyla1         191 TVLRLHGDCHAGNILWRDG--PMFVDLDDARN  220 (325)
T ss_dssp             CCEECCSSCSGGGEEESSS--EEECCCTTCCE
T ss_pred             CceeecCCCCcccEEEeCC--ceEEechhccc
Confidence            3578999999999999754  45899997764

>d1nd4a_ d.144.1.6 (A:) Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase) {Bacteria (Klebsiella pneumoniae) [TaxId: 573]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase)
species: Bacteria (Klebsiella pneumoniae) [TaxId: 573]

Probab=81.64  E-value=0.32  Score=46.33  Aligned_cols=33  Identities=15%  Similarity=0.277  Sum_probs=27.9

Q ss_pred             CCCCEEeccCCCCCEEeCCCCcEEEeecccccc
Q 045449          690 HSIPIIHCDLKPSNVLLDEDMVAHISDFGIAKL  722 (823)
Q Consensus       690 h~~~ivHrdlk~~NiLl~~~~~~kl~DfGla~~  722 (823)
                      ....++|+|+.|.|||++++..+.|+||+.+..
T Consensus       173 ~~~~liHgD~~~~Nvl~~~~~~~~iID~~~~~~  205 (255)
T d1nd4a_         173 EDLVVTHGDACLPNIMVENGRFSGFIDCGRLGV  205 (255)
T ss_dssp             CCEEEECSSCCGGGEEEETTEEEEECCCTTCEE
T ss_pred             CCceEEeCCCCCcceEEeCCceEEEEEchhccc
Confidence            345689999999999999877788999997764