Citrus Sinensis ID: 045495

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------55
MGSNLLLLITLPILISIPFFSNPTCAANFARKSRVTPETICKYTPNQSYCKSMLANAKQTTDIYTYGRFSFRKAFSQSRKFLDLIDNYLKRPSTLSTAAIRALEDCYLLADLNMDYFSRSFQTVNNTSQILPAKQADDVQTRLSAILTNQQTCLDGLQAAVSAWSTANGLSVPLLDDTKLSSVLLALFKKGWVGQKRKGTIWQMPTGTQRLFGKDGRLPLIMSDENRAIYEKVCKRKLNSGDGRGVLVSKIVTVSQDGRGMFSTINDAINAAPNDTDVSNGYFLIYIKDGVYQEYVSIAKNKINLMMIGDGINQTIITGNRSAVDGWTTFNSATFAGPSKFQAVALRSGGDLSTFYSCSFEGYQDTLYTHSLRQFYRECDIYGTIDFILGNAAVVLQNCNIHARLPMIGQYNVITAQGRTDPNQNTGISIHNCTFRAADELASSNRTLPTYLGRPWKEYSRTVVMQSFLDGLINPAGWQIWTGDFALSTLYYAEYDNRGPGSNTANRVTWPGYHAINATDAANFTVSNFLLGDQWLPRTGVPYTGGLIS
ccHHHHHHHHHHHHHHHcccccccccccccccccccHHccccccccHHcHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccccccccEEEEccccccccccHHHHHHHccccccccccEEEEEEEcEEEEEEEEEccccccEEEEEEccccEEEEEcccccccccEEcccccccccccEEEEEEEcccEEEEEccEEEEcccccccccccEEEEccEEEEEcEEEEccEEEEEcccEEEEEccccccccEEEcccccccccccEEEEEccEEEEcccccccccccccccccccccccEEEEEccccccccccccccccccccccccEEEEEEccccccccccccccccccccccHHHHcccccccccccccccccccccccccccc
ccHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHcccccHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHcHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccHHHHHHHHcccccHHcccccccccccccEEEEcccccccccHHHHHHHccccccccccEEEEEEccEEEEccEEEccccccEEEEEcccccEEEEEccccccccccHHHccEccHHHcccccEEEccccEEEEEEEEEcccccEEEcccEEEEEccEEEEccccEEEccEEEEEccEEEEccccccccEEEEEEcccccccccEEEEEccEEEEccccHHHHHHccEEEEcccccccEEEEEccEEcccEcccccccccccccccccEEEEEccEcHHHccccccccccEEEcccHHHHHccHHHHHccccccccccccccccccc
MGSNLLLLItlpilisipffsnptcaanfarksrvtpetickytpnqsyCKSMLANakqttdiytygrFSFRKAFSQSRKFLDLIDNYLKRPSTLSTAAIRALEDCYLLADLNMDYFSRsfqtvnntsqilpakqadDVQTRLSAILTNQQTCLDGLQAAVSAWSTanglsvpllddtKLSSVLLALFKkgwvgqkrkgtiwqmptgtqrlfgkdgrlplimsdeNRAIYEKVCKRklnsgdgrgVLVSKIVTvsqdgrgmFSTINDAinaapndtdvsngYFLIYIKDGVYQEYVSIAKNKINLMMIgdginqtiitgnrsavdgwttfnsatfagpsKFQAVALRsggdlstfyscsfegyqdtLYTHSLRQFYRECDIYGTIDFILGNAAVVLQNCniharlpmigqynvitaqgrtdpnqntgisihncTFRAADElassnrtlptylgrpwkeysRTVVMQSFLDglinpagwqiwtgdFALSTLYYaeydnrgpgsntanrvtwpgyhainatdaanftvsnfllgdqwlprtgvpytgglis
MGSNLLLLITLPILISIPFFSNPTCAANfarksrvtpetiCKYTPNQSYCKSMLANAKQTTDIYTYGRFSFRKAFSQSRKFLDLIDNYLKRPSTLSTAAIRALEDCYLLADLNMDYFSRSFQTVNNTSQILPAKQADDVQTRLSAILTNQQTCLDGLQAAVSAWSTANGLSVPLLDDTKLSSVLLALfkkgwvgqkrkgtiwqmptgtqrlfgkdgrlPLIMSDENRAIYEKVCKrklnsgdgrgvlVSKIVTVSQDGRGMFSTINDAinaapndtdvSNGYFLIYIKDGVYQEYVSIAKNKINLMMIGDGINQTIITGNRSAVDGWTTFNSATFAGPSKFQAVALRSGGDLSTFYSCSFEGYQDTLYTHSLRQFYRECDIYGTIDFILGNAAVVLQNCNIHARLPMIGQYNVITAQGRTDPNQNTGISIHNCTFRAADELassnrtlptylgrpwkEYSRTVVMQSFLDGLINPAGWQIWTGDFALSTLYYAEYDNRGPGSNTANRVTWPGYHAINATDAANFTVSNFLlgdqwlprtgvpytgglis
MGSNllllitlpilisiPFFSNPTCAANFARKSRVTPETICKYTPNQSYCKSMLANAKQTTDIYTYGRFSFRKAFSQSRKFLDLIDNYLKRPSTLSTAAIRALEDCYLLADLNMDYFSRSFQTVNNTSQILPAKQADDVQTRLSAILTNQQTCLDGLQAAVSAWSTANGLSVPLLDDTKLSSVLLALFKKGWVGQKRKGTIWQMPTGTQRLFGKDGRLPLIMSDENRAIYEKVCKRKLNSGDGRGVLVSKIVTVSQDGRGMFSTINDAINAAPNDTDVSNGYFLIYIKDGVYQEYVSIAKNKINLMMIGDGINQTIITGNRSAVDGWTTFNSATFAGPSKFQAVALRSGGDLSTFYSCSFEGYQDTLYTHSLRQFYRECDIYGTIDFILGNAAVVLQNCNIHARLPMIGQYNVITAQGRTDPNQNTGISIHNCTFRAADELASSNRTLPTYLGRPWKEYSRTVVMQSFLDGLINPAGWQIWTGDFALSTLYYAEYDNRGPGSNTANRVTWPGYHAINATDAANFTVSNFLLGDQWLPRTGVPYTGGLIS
****LLLLITLPILISIPFFSNPTCAANFARKSRVTPETICKYTPNQSYCKSMLANAKQTTDIYTYGRFSFRKAFSQSRKFLDLIDNYLKRPSTLSTAAIRALEDCYLLADLNMDYFSRSFQTVNNTSQILPAKQADDVQTRLSAILTNQQTCLDGLQAAVSAWSTANGLSVPLLDDTKLSSVLLALFKKGWVGQKRKGTIWQMPTGTQRLFGKDGRLPLIMSDENRAIYEKVCKRKLNSGDGRGVLVSKIVTVSQDGRGMFSTINDAINAAPNDTDVSNGYFLIYIKDGVYQEYVSIAKNKINLMMIGDGINQTIITGNRSAVDGWTTFNSATFAGPSKFQAVALRSGGDLSTFYSCSFEGYQDTLYTHSLRQFYRECDIYGTIDFILGNAAVVLQNCNIHARLPMIGQYNVITAQGRTDPNQNTGISIHNCTFRAADELASSNRTLPTYLGRPWKEYSRTVVMQSFLDGLINPAGWQIWTGDFALSTLYYAEYDNRGPGSNTANRVTWPGYHAINATDAANFTVSNFLLGDQWLPRTGVPYTGG***
*GSNLLLLITLPILISIPF********************ICKYTPNQSYCK****************RFSFRKAFSQSRKF*******************RALEDCYLLADLNMDYFSRSFQTVN********KQADDVQTRLSAILTNQQTCLDGLQAAVSAWST*******LLDDTKLSSVLLALFK******************************LIMSDENRAIYEKVC**********GVLVSKIVTVSQDGRGMFSTINDAINAAPNDTDVSNGYFLIYIKDGVYQEYVSIAKNKINLMMIGDGINQTIITGNRSAVDGWTTFNSATFAGPSKFQAVALRSGGDLSTFYSCSFEGYQDTLYTHSLRQFYRECDIYGTIDFILGNAAVVLQNCNIHARLPMIGQYNVITAQGRTDPNQNTGISIHNCTFRAADELASSNRTLPTYLGRPWKEYSRTVVMQSFLDGLINPAGWQIWTGDFALSTLYYAEYDNRGPGSNTANRVTWPGYHAINATDAANFTVSNFLLGDQWLPRTGVPYTGGLIS
MGSNLLLLITLPILISIPFFSNPTCAANFARKSRVTPETICKYTPNQSYCKSMLANAKQTTDIYTYGRFSFRKAFSQSRKFLDLIDNYLKRPSTLSTAAIRALEDCYLLADLNMDYFSRSFQTVNNTSQILPAKQADDVQTRLSAILTNQQTCLDGLQAAVSAWSTANGLSVPLLDDTKLSSVLLALFKKGWVGQKRKGTIWQMPTGTQRLFGKDGRLPLIMSDENRAIYEKVCKRKLNSGDGRGVLVSKIVTVSQDGRGMFSTINDAINAAPNDTDVSNGYFLIYIKDGVYQEYVSIAKNKINLMMIGDGINQTIITGNRSAVDGWTTFNSATFAGPSKFQAVALRSGGDLSTFYSCSFEGYQDTLYTHSLRQFYRECDIYGTIDFILGNAAVVLQNCNIHARLPMIGQYNVITAQGRTDPNQNTGISIHNCTFRAADELASSNRTLPTYLGRPWKEYSRTVVMQSFLDGLINPAGWQIWTGDFALSTLYYAEYDNRGPGSNTANRVTWPGYHAINATDAANFTVSNFLLGDQWLPRTGVPYTGGLIS
MGSNLLLLITLPILISIPFFS***********SRVTPETICKYTPNQSYCKSMLANAKQTTDIYTYGRFSFRKAFSQSRKFLDLIDNYLKRPSTLSTAAIRALEDCYLLADLNMDYFSRSFQTVNNTSQILPAKQADDVQTRLSAILTNQQTCLDGLQAAVSAWSTANGLSVPLLDDTKLSSVLLALFKKGWVG**********************************I*****KR********GVLVSKIVTVSQDGRGMFSTINDAINAAPNDTDVSNGYFLIYIKDGVYQEYVSIAKNKINLMMIGDGINQTIITGNRSAVDGWTTFNSATFAGPSKFQAVALRSGGDLSTFYSCSFEGYQDTLYTHSLRQFYRECDIYGTIDFILGNAAVVLQNCNIHARLPMIGQYNVITAQGRTDPNQNTGISIHNCTFRAADELASSNRTLPTYLGRPWKEYSRTVVMQSFLDGLINPAGWQIWTGDFALSTLYYAEYDNRGPGSNTANRVTWPGYHAINATDAANFTVSNFLLGDQWLPRTGVPYTG****
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iiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MGSNLLLLITLPILISIPFFSNPTCAANFARKSRVTPETICKYTPNQSYCKSMLANAKQTTDIYTYGRFSFRKAFSQSRKFLDLIDNYLKRPSTLSTAAIRALEDCYLLADLNMDYFSRSFQTVNNTSQILPAKQADDVQTRLSAILTNQQTCLDGLQAAVSAWSTANGLSVPLLDDTKLSSVLLALFKKGWVGQKRKGTIWQMPTGTQRLFGKDGRLPLIMSDENRAIYEKVCKRKLNSGDGRGVLVSKIVTVSQDGRGMFSTINDAINAAPNDTDVSNGYFLIYIKDGVYQEYVSIAKNKINLMMIGDGINQTIITGNRSAVDGWTTFNSATFAGPSKFQAVALRSGGDLSTFYSCSFEGYQDTLYTHSLRQFYRECDIYGTIDFILGNAAVVLQNCNIHARLPMIGQYNVITAQGRTDPNQNTGISIHNCTFRAADELASSNRTLPTYLGRPWKEYSRTVVMQSFLDGLINPAGWQIWTGDFALSTLYYAEYDNRGPGSNTANRVTWPGYHAINATDAANFTVSNFLLGDQWLPRTGVPYTGGLIS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query549 2.2.26 [Sep-21-2011]
Q9SRX4579 Probable pectinesterase/p yes no 0.967 0.917 0.580 0.0
Q8RXK7573 Probable pectinesterase/p no no 0.985 0.944 0.574 0.0
O22256560 Probable pectinesterase/p no no 0.981 0.962 0.585 0.0
Q94CB1619 Probable pectinesterase/p no no 0.912 0.809 0.454 1e-132
Q9FF77624 Probable pectinesterase/p no no 0.905 0.796 0.451 1e-129
O48711547 Probable pectinesterase/p no no 0.885 0.888 0.413 1e-103
O04887510 Pectinesterase 2 OS=Citru no no 0.828 0.892 0.443 1e-101
Q43062522 Pectinesterase/pectineste N/A no 0.741 0.779 0.470 1e-101
P85076321 Pectinesterase OS=Actinid N/A no 0.524 0.897 0.595 3e-98
P14280546 Pectinesterase 1 OS=Solan N/A no 0.748 0.752 0.436 4e-98
>sp|Q9SRX4|PME7_ARATH Probable pectinesterase/pectinesterase inhibitor 7 OS=Arabidopsis thaliana GN=PME7 PE=2 SV=1 Back     alignment and function desciption
 Score =  652 bits (1682), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 336/579 (58%), Positives = 410/579 (70%), Gaps = 48/579 (8%)

Query: 13  ILISIPFFSNPTCAANFARKSRVTPETICKYTPNQSYCKSMLANAKQTTDIYTYGRFSFR 72
           ILI++ FF     A++   ++     TICK TP+  YCKS+  +++   ++  YG FS R
Sbjct: 7   ILITLSFFLQSVLASS---QTLSNSSTICKTTPDPKYCKSVFPHSQG--NVQQYGCFSIR 61

Query: 73  KAFSQSRKFLDLIDNYLKRPSTLST-AAIRALEDCYLLADLNMDYFSRSFQTVNNTS--- 128
           K+ SQSRKF+  +D Y+KR + LS  A IRAL+DC  LA L MDY   SF+TVN+TS   
Sbjct: 62  KSLSQSRKFIRTVDRYIKRNAHLSQPAVIRALQDCRFLAGLTMDYLLTSFETVNDTSAKT 121

Query: 129 --QILPAKQADDVQTRLSAILTNQQTCLDGLQAAVS---AWSTANGLSVPLLDDTKLSSV 183
             + L   +ADD+QT LSA LTN+QTCL+GL  A S    W+   G+++PL++DTKL  V
Sbjct: 122 SFKPLSFPKADDIQTLLSAALTNEQTCLEGLTTAASYSATWTVRTGVALPLVNDTKLLGV 181

Query: 184 LLALFKKGWVGQKRK--GTIWQMP-------TGTQRLFGKDGRLPLIMSDENRAIYEKVC 234
            LALF KGWV +K+K  G  W  P       T   RLF ++G LPL M+++ +A+YE + 
Sbjct: 182 SLALFTKGWVPKKKKRAGFAWAQPRSGSSTHTKPFRLF-RNGALPLKMTEKTKAVYESLS 240

Query: 235 KRKLNSGDGRG-------VLVSKIVTVSQDGRGMFSTINDAINAAPNDTDVSNGYFLIYI 287
           +RKL  GD  G       VL+S IVTVSQDG G F+ I  A+ AAPN+TD S G+FLIY+
Sbjct: 241 RRKLADGDSNGDGDDGSMVLISDIVTVSQDGTGNFTNITAAVAAAPNNTDGSAGFFLIYV 300

Query: 288 KDGVYQEYVSIAKNKINLMMIGDGINQTIITGNRSAVDGWTTFNSATFA----------- 336
             G+Y+EY+SIAKNK  +MMIGDGINQT++TGNRS VDGWTTFNSATFA           
Sbjct: 301 TAGIYEEYISIAKNKRYMMMIGDGINQTVVTGNRSVVDGWTTFNSATFAVTAPNFVAVNI 360

Query: 337 ------GPSKFQAVALRSGGDLSTFYSCSFEGYQDTLYTHSLRQFYRECDIYGTIDFILG 390
                 GP K QAVALRSG D S FYSCSFE YQDTLYTHSLRQFYRECD+YGT+DFI G
Sbjct: 361 TFRNTAGPEKHQAVALRSGADFSIFYSCSFEAYQDTLYTHSLRQFYRECDVYGTVDFIFG 420

Query: 391 NAAVVLQNCNIHARLPMIGQYNVITAQGRTDPNQNTGISIHNCTFRAADELASSNRTLPT 450
           NAAVV QNCN++ R PM  Q+N ITAQGR+DPNQNTG SI NCT + AD+L SSN T+ T
Sbjct: 421 NAAVVFQNCNLYPRKPMPNQFNAITAQGRSDPNQNTGTSIQNCTIKPADDLVSSNYTVKT 480

Query: 451 YLGRPWKEYSRTVVMQSFLDGLINPAGWQIWTGDFALSTLYYAEYDNRGPGSNTANRVTW 510
           YLGRPWKEYSRTV MQS++DG + P GW+ W GDFALSTLYYAEY+N GPGSNT NRVTW
Sbjct: 481 YLGRPWKEYSRTVYMQSYIDGFVEPVGWREWNGDFALSTLYYAEYNNTGPGSNTTNRVTW 540

Query: 511 PGYHAINATDAANFTVSNFLLGDQWLPRTGVPYTGGLIS 549
           PGYH IN+TDAANFTV+   +   W+ +TGVPYT GLIS
Sbjct: 541 PGYHVINSTDAANFTVTGLFIEADWIWKTGVPYTSGLIS 579
Acts in the modification of cell walls via demethylesterification of cell wall pectin.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 1
>sp|Q8RXK7|PME41_ARATH Probable pectinesterase/pectinesterase inhibitor 41 OS=Arabidopsis thaliana GN=PME41 PE=2 SV=2 Back     alignment and function description
>sp|O22256|PME20_ARATH Probable pectinesterase/pectinesterase inhibitor 20 OS=Arabidopsis thaliana GN=PME20 PE=2 SV=2 Back     alignment and function description
>sp|Q94CB1|PME25_ARATH Probable pectinesterase/pectinesterase inhibitor 25 OS=Arabidopsis thaliana GN=PME25 PE=2 SV=1 Back     alignment and function description
>sp|Q9FF77|PME47_ARATH Probable pectinesterase/pectinesterase inhibitor 47 OS=Arabidopsis thaliana GN=PME47 PE=2 SV=1 Back     alignment and function description
>sp|O48711|PME12_ARATH Probable pectinesterase/pectinesterase inhibitor 12 OS=Arabidopsis thaliana GN=PME12 PE=2 SV=1 Back     alignment and function description
>sp|O04887|PME2_CITSI Pectinesterase 2 OS=Citrus sinensis GN=PECS-2.1 PE=2 SV=1 Back     alignment and function description
>sp|Q43062|PME_PRUPE Pectinesterase/pectinesterase inhibitor PPE8B OS=Prunus persica PE=2 SV=1 Back     alignment and function description
>sp|P85076|PME_ACTDE Pectinesterase OS=Actinidia deliciosa PE=1 SV=1 Back     alignment and function description
>sp|P14280|PME1_SOLLC Pectinesterase 1 OS=Solanum lycopersicum GN=PME1.9 PE=1 SV=5 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query549
224128446560 predicted protein [Populus trichocarpa] 0.983 0.964 0.655 0.0
224068368558 predicted protein [Populus trichocarpa] 0.985 0.969 0.656 0.0
255564230566 Pectinesterase-2 precursor, putative [Ri 0.927 0.899 0.686 0.0
356536715559 PREDICTED: probable pectinesterase/pecti 0.967 0.949 0.632 0.0
356505590556 PREDICTED: probable pectinesterase/pecti 0.925 0.913 0.663 0.0
356572750555 PREDICTED: probable pectinesterase/pecti 0.925 0.915 0.657 0.0
359479963556 PREDICTED: probable pectinesterase/pecti 0.950 0.938 0.623 0.0
356500319553 PREDICTED: probable pectinesterase/pecti 0.939 0.933 0.645 0.0
356503911615 PREDICTED: LOW QUALITY PROTEIN: probable 0.978 0.873 0.619 0.0
356570974610 PREDICTED: probable pectinesterase/pecti 0.978 0.880 0.611 0.0
>gi|224128446|ref|XP_002320332.1| predicted protein [Populus trichocarpa] gi|222861105|gb|EEE98647.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  746 bits (1926), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/563 (65%), Positives = 436/563 (77%), Gaps = 23/563 (4%)

Query: 3   SNLLLLITLPILISIPFFSNPTCAANFARKSRVTPETICKYTPNQSYCKSMLANAKQTTD 62
           S L+ L+ L ++  +PF ++P+ A +      V+P T+CK TP+ S+CKS+L    Q+T+
Sbjct: 4   SKLISLVALAVVF-LPFLASPSLA-DVPSSDPVSPGTLCKDTPDPSFCKSVLP--VQSTN 59

Query: 63  IYTYGRFSFRKAFSQSRKFLDLIDNYLKRPSTLSTAAIRALEDCYLLADLNMDYFSRSFQ 122
           +Y   R   RK+ SQSRKFL+L++ YL R STLS AAIRALEDC  LA+LNM++   SFQ
Sbjct: 60  VYDSARLCVRKSLSQSRKFLNLVNEYLSRRSTLSVAAIRALEDCQFLANLNMEFLLSSFQ 119

Query: 123 TVNNTSQILPAKQADDVQTRLSAILTNQQTCLDGLQAAVSAWSTANGLSVPLLDDTKLSS 182
           TVN TS+ LP+ QAD+VQT LSAILTNQQTCLDGLQA  SA S +N LSVPL +DTKL S
Sbjct: 120 TVNATSKTLPSLQADNVQTLLSAILTNQQTCLDGLQATSSASSVSNDLSVPLSNDTKLYS 179

Query: 183 VLLALFKKGWVGQKRKGTIWQMPTGTQRLFGKDGRLPLIMSDENRAIYEKVCKRKLNSGD 242
           V LA F +GWV +K++G+ WQ P   Q  F + GRLP+ MS   RAIYE V  RKL    
Sbjct: 180 VSLAFFTEGWVPKKKRGSTWQ-PKSKQFAF-RHGRLPMKMSARTRAIYESVSTRKLLQTV 237

Query: 243 GRGVLVSKIVTVSQDGRGMFSTINDAINAAPNDTDVSNGYFLIYIKDGVYQEYVSIAKNK 302
              + VS IVTVSQDG+G F+TINDA+ AAPN+TD SNGYF+IY+  G+Y+EYVSIAKNK
Sbjct: 238 NNDIEVSDIVTVSQDGQGNFTTINDAVAAAPNNTDGSNGYFMIYVTAGIYEEYVSIAKNK 297

Query: 303 INLMMIGDGINQTIITGNRSAVDGWTTFNSATFA-----------------GPSKFQAVA 345
             LMM+GDGINQT+ITGNRS VDGWTTFNSATFA                 G  K QAVA
Sbjct: 298 KYLMMVGDGINQTVITGNRSVVDGWTTFNSATFAVVAPNFVAVNITFRNTAGAVKHQAVA 357

Query: 346 LRSGGDLSTFYSCSFEGYQDTLYTHSLRQFYRECDIYGTIDFILGNAAVVLQNCNIHARL 405
           +RSG DLS FY CSFEGYQDTLYTHSLRQFYRECDIYGT+DFI GNAAVVLQNCN++ RL
Sbjct: 358 VRSGADLSAFYGCSFEGYQDTLYTHSLRQFYRECDIYGTVDFIFGNAAVVLQNCNLYPRL 417

Query: 406 PMIGQYNVITAQGRTDPNQNTGISIHNCTFRAADELASSNRTLPTYLGRPWKEYSRTVVM 465
           PM GQ+N ITAQGRTDPNQNTG SIHNC  +AAD+LASSN T+ TYLGRPWK+YSRTV M
Sbjct: 418 PMSGQFNAITAQGRTDPNQNTGTSIHNCNIKAADDLASSNATVQTYLGRPWKQYSRTVYM 477

Query: 466 QSFLDGLINPAGWQIWTGDFALSTLYYAEYDNRGPGSNTANRVTWPGYHAINATDAANFT 525
           QSF+DGLINPAGWQIW+GDFAL+T YYAEY+N GPGS+T NRVTWPG+H INATDA NFT
Sbjct: 478 QSFMDGLINPAGWQIWSGDFALNTSYYAEYNNTGPGSDTTNRVTWPGFHVINATDAVNFT 537

Query: 526 VSNFLLGDQWLPRTGVPYTGGLI 548
           VS+FLLG+ WLP+T VP++ GLI
Sbjct: 538 VSSFLLGNDWLPQTAVPFSSGLI 560

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224068368|ref|XP_002302726.1| predicted protein [Populus trichocarpa] gi|222844452|gb|EEE81999.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255564230|ref|XP_002523112.1| Pectinesterase-2 precursor, putative [Ricinus communis] gi|223537674|gb|EEF39297.1| Pectinesterase-2 precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356536715|ref|XP_003536881.1| PREDICTED: probable pectinesterase/pectinesterase inhibitor 41-like [Glycine max] Back     alignment and taxonomy information
>gi|356505590|ref|XP_003521573.1| PREDICTED: probable pectinesterase/pectinesterase inhibitor 41-like [Glycine max] Back     alignment and taxonomy information
>gi|356572750|ref|XP_003554529.1| PREDICTED: probable pectinesterase/pectinesterase inhibitor 41-like [Glycine max] Back     alignment and taxonomy information
>gi|359479963|ref|XP_002268492.2| PREDICTED: probable pectinesterase/pectinesterase inhibitor 7-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|356500319|ref|XP_003518980.1| PREDICTED: probable pectinesterase/pectinesterase inhibitor 41-like [Glycine max] Back     alignment and taxonomy information
>gi|356503911|ref|XP_003520743.1| PREDICTED: LOW QUALITY PROTEIN: probable pectinesterase/pectinesterase inhibitor 7-like [Glycine max] Back     alignment and taxonomy information
>gi|356570974|ref|XP_003553657.1| PREDICTED: probable pectinesterase/pectinesterase inhibitor 7-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query549
TAIR|locus:2024750579 AT1G02810 [Arabidopsis thalian 0.484 0.459 0.625 8.1e-140
TAIR|locus:2062013560 AT2G47550 [Arabidopsis thalian 0.919 0.901 0.464 3.7e-119
TAIR|locus:2050941511 AT2G45220 [Arabidopsis thalian 0.519 0.557 0.557 3.4e-92
TAIR|locus:2133224573 ATPMEPCRB [Arabidopsis thalian 0.484 0.464 0.625 1.2e-90
TAIR|locus:2201230554 AT1G23200 [Arabidopsis thalian 0.890 0.882 0.421 6.5e-90
TAIR|locus:2101836519 AT3G60730 [Arabidopsis thalian 0.402 0.425 0.570 9.8e-90
TAIR|locus:2154277587 PMEPCRF "pectin methylesterase 0.772 0.722 0.433 3.3e-86
TAIR|locus:2099565594 AT3G47400 [Arabidopsis thalian 0.411 0.380 0.538 2.5e-83
TAIR|locus:2077710529 PME61 "pectin methylesterase 6 0.695 0.722 0.427 4.2e-79
TAIR|locus:2066195547 AT2G26440 [Arabidopsis thalian 0.892 0.895 0.375 6.8e-79
TAIR|locus:2024750 AT1G02810 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 907 (324.3 bits), Expect = 8.1e-140, Sum P(2) = 8.1e-140
 Identities = 169/270 (62%), Positives = 201/270 (74%)

Query:   280 NGYFLIYIKDGVYQEYVSIAKNKINLMMIGDGINQTIITGNRSAVDGWTTFNSATFAGPS 339
             N  +++ I DG+ Q  V+  ++ ++     +     +   N  AV+   TF +   AGP 
Sbjct:   314 NKRYMMMIGDGINQTVVTGNRSVVDGWTTFNSATFAVTAPNFVAVN--ITFRNT--AGPE 369

Query:   340 KFQAVALRSGGDLSTFYSCSFEGYQDTLYTHSLRQFYRECDIYGTIDFILGNAAVVLQNC 399
             K QAVALRSG D S FYSCSFE YQDTLYTHSLRQFYRECD+YGT+DFI GNAAVV QNC
Sbjct:   370 KHQAVALRSGADFSIFYSCSFEAYQDTLYTHSLRQFYRECDVYGTVDFIFGNAAVVFQNC 429

Query:   400 NIHARLPMIGQYNVITAQGRTDPNQNTGISIHNCTFRAADELASSNRTLPTYLGRPWKEY 459
             N++ R PM  Q+N ITAQGR+DPNQNTG SI NCT + AD+L SSN T+ TYLGRPWKEY
Sbjct:   430 NLYPRKPMPNQFNAITAQGRSDPNQNTGTSIQNCTIKPADDLVSSNYTVKTYLGRPWKEY 489

Query:   460 SRTVVMQSFLDGLINPAGWQIWTGDFALSTLYYAEYDNRGPGSNTANRVTWPGYHAINAT 519
             SRTV MQS++DG + P GW+ W GDFALSTLYYAEY+N GPGSNT NRVTWPGYH IN+T
Sbjct:   490 SRTVYMQSYIDGFVEPVGWREWNGDFALSTLYYAEYNNTGPGSNTTNRVTWPGYHVINST 549

Query:   520 DAANFTVSNFLLGDQWLPRTGVPYTGGLIS 549
             DAANFTV+   +   W+ +TGVPYT GLIS
Sbjct:   550 DAANFTVTGLFIEADWIWKTGVPYTSGLIS 579
GO:0004857 "enzyme inhibitor activity" evidence=IEA
GO:0005576 "extracellular region" evidence=ISM
GO:0005618 "cell wall" evidence=IEA
GO:0009505 "plant-type cell wall" evidence=ISS
GO:0030599 "pectinesterase activity" evidence=IEA;ISS
GO:0042545 "cell wall modification" evidence=IEA
TAIR|locus:2062013 AT2G47550 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2050941 AT2G45220 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2133224 ATPMEPCRB [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2201230 AT1G23200 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2101836 AT3G60730 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2154277 PMEPCRF "pectin methylesterase PCR fragment F" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2099565 AT3G47400 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2077710 PME61 "pectin methylesterase 61" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2066195 AT2G26440 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9SRX4PME7_ARATH3, ., 1, ., 1, ., 1, 10.58030.96720.9170yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.1.1.110.914
3rd Layer3.1.10.921

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00140717
pectinesterase family protein (EC-3.1.1.11) (561 aa)
(Populus trichocarpa)
Predicted Functional Partners:
estExt_Genewise1_v1.C_LG_VIII1759
SubName- Full=Putative uncharacterized protein; (327 aa)
  •  •  0.928
estExt_fgenesh4_pm.C_LG_VI0607
SubName- Full=Putative uncharacterized protein; (333 aa)
  •  •  0.925
fgenesh4_pg.C_LG_XVI000684
SubName- Full=Putative uncharacterized protein; (333 aa)
  •  •  0.924
gw1.X.2863.1
hypothetical protein (378 aa)
  •  •  0.923
eugene3.00081702
SubName- Full=Putative uncharacterized protein; (402 aa)
  •  •  0.923
gw1.II.376.1
hypothetical protein (392 aa)
  •  •  0.920
estExt_fgenesh4_pg.C_LG_I2215
hypothetical protein (403 aa)
  •  •  0.919
fgenesh4_pg.C_scaffold_170000043
hypothetical protein (396 aa)
  •  •  0.918
eugene3.00150667
SubName- Full=Putative uncharacterized protein; (404 aa)
  •  •  0.918
gw1.XI.2918.1
hypothetical protein (368 aa)
  •  •  0.918

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query549
PLN02713566 PLN02713, PLN02713, Probable pectinesterase/pectin 0.0
PLN03043538 PLN03043, PLN03043, Probable pectinesterase/pectin 0.0
pfam01095298 pfam01095, Pectinesterase, Pectinesterase 1e-173
PLN02416541 PLN02416, PLN02416, probable pectinesterase/pectin 1e-144
PLN02301548 PLN02301, PLN02301, pectinesterase/pectinesterase 1e-144
PLN02468565 PLN02468, PLN02468, putative pectinesterase/pectin 1e-140
PLN02484587 PLN02484, PLN02484, probable pectinesterase/pectin 1e-137
PLN02314586 PLN02314, PLN02314, pectinesterase 1e-136
PLN02201520 PLN02201, PLN02201, probable pectinesterase/pectin 1e-134
PLN02170529 PLN02170, PLN02170, probable pectinesterase/pectin 1e-133
PLN02916502 PLN02916, PLN02916, pectinesterase family protein 1e-131
PLN02745596 PLN02745, PLN02745, Putative pectinesterase/pectin 1e-130
PLN02506537 PLN02506, PLN02506, putative pectinesterase/pectin 1e-126
PLN02933530 PLN02933, PLN02933, Probable pectinesterase/pectin 1e-125
PLN02313587 PLN02313, PLN02313, Pectinesterase/pectinesterase 1e-121
PLN02995539 PLN02995, PLN02995, Probable pectinesterase/pectin 1e-119
PLN02488509 PLN02488, PLN02488, probable pectinesterase/pectin 1e-112
PLN02217 670 PLN02217, PLN02217, probable pectinesterase/pectin 1e-106
PLN02990572 PLN02990, PLN02990, Probable pectinesterase/pectin 1e-104
PLN02708553 PLN02708, PLN02708, Probable pectinesterase/pectin 9e-95
PLN02698497 PLN02698, PLN02698, Probable pectinesterase/pectin 1e-93
PLN02197588 PLN02197, PLN02197, pectinesterase 8e-75
PLN02432293 PLN02432, PLN02432, putative pectinesterase 7e-57
PLN02682369 PLN02682, PLN02682, pectinesterase family protein 3e-52
PLN02773317 PLN02773, PLN02773, pectinesterase 2e-49
PLN02497331 PLN02497, PLN02497, probable pectinesterase 3e-49
PLN02665366 PLN02665, PLN02665, pectinesterase family protein 1e-45
PLN02304379 PLN02304, PLN02304, probable pectinesterase 1e-45
PLN02671359 PLN02671, PLN02671, pectinesterase 7e-44
PLN02480343 PLN02480, PLN02480, Probable pectinesterase 7e-42
PLN02634359 PLN02634, PLN02634, probable pectinesterase 7e-39
PLN02176340 PLN02176, PLN02176, putative pectinesterase 1e-38
COG4677405 COG4677, PemB, Pectin methylesterase [Carbohydrate 1e-27
pfam04043145 pfam04043, PMEI, Plant invertase/pectin methyleste 8e-20
smart00856148 smart00856, PMEI, Plant invertase/pectin methylest 5e-19
TIGR01614178 TIGR01614, PME_inhib, pectinesterase inhibitor dom 2e-09
PRK10531422 PRK10531, PRK10531, acyl-CoA thioesterase; Provisi 3e-09
>gnl|CDD|215383 PLN02713, PLN02713, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information 
 Score =  864 bits (2234), Expect = 0.0
 Identities = 384/569 (67%), Positives = 446/569 (78%), Gaps = 23/569 (4%)

Query: 1   MGSNLLLLITLPILISIPFFSNPTCAANFARKSRVTPETICKYTPNQSYCKSMLANAKQT 60
           M S L+LL TL +L+    F + + A++    + V+P TIC  TP+ S+CKS+L +  Q 
Sbjct: 1   MSSKLILLTTLALLLL--LFFSSSSASDPPPSTPVSPSTICNTTPDPSFCKSVLPH-NQP 57

Query: 61  TDIYTYGRFSFRKAFSQSRKFLDLIDNYLKRPSTL-STAAIRALEDCYLLADLNMDYFSR 119
            ++Y YGRFS RK+ SQSRKFL L+D YLKR STL S +AIRALEDC  LA LN+D+   
Sbjct: 58  GNVYDYGRFSVRKSLSQSRKFLSLVDRYLKRNSTLLSKSAIRALEDCQFLAGLNIDFLLS 117

Query: 120 SFQTVNNTSQILPAKQADDVQTRLSAILTNQQTCLDGLQAAVSAWSTANGLSVPLLDDTK 179
           SF+TVN++S+ L   QADDVQT LSAILTNQQTCLDGLQAA SAWS  NGL+VPL +DTK
Sbjct: 118 SFETVNSSSKTLSDPQADDVQTLLSAILTNQQTCLDGLQAASSAWSVRNGLAVPLSNDTK 177

Query: 180 LSSVLLALFKKGWVGQKRKGT-IWQMPTGTQRLF-GKDGRLPLIMSDENRAIYEKVCKRK 237
           L SV LALF KGWV +K+KG    +     +     ++GRLPL M+++ RA+YE V +RK
Sbjct: 178 LYSVSLALFTKGWVPKKKKGRPKTKRKAHFKPFRAFRNGRLPLKMTEKTRAVYESVSRRK 237

Query: 238 LNSGDGRGVLVSKIVTVSQDGRGMFSTINDAINAAPNDTDVSNGYFLIYIKDGVYQEYVS 297
           L  GD   VLVS IVTV+Q+G G F+TINDA+ AAPN+TD SNGYF+IY+  GVY+EYVS
Sbjct: 238 LLDGDANAVLVSDIVTVNQNGTGNFTTINDAVAAAPNNTDGSNGYFVIYVTAGVYEEYVS 297

Query: 298 IAKNKINLMMIGDGINQTIITGNRSAVDGWTTFNSATF-----------------AGPSK 340
           I KNK  LMMIGDGINQT+ITGNRS VDGWTTFNSATF                 AGP+K
Sbjct: 298 IPKNKKYLMMIGDGINQTVITGNRSVVDGWTTFNSATFAVVGQNFVAVNITFRNTAGPAK 357

Query: 341 FQAVALRSGGDLSTFYSCSFEGYQDTLYTHSLRQFYRECDIYGTIDFILGNAAVVLQNCN 400
            QAVALRSG DLSTFYSCSFE YQDTLYTHSLRQFYRECDIYGT+DFI GNAAVV QNCN
Sbjct: 358 HQAVALRSGADLSTFYSCSFEAYQDTLYTHSLRQFYRECDIYGTVDFIFGNAAVVFQNCN 417

Query: 401 IHARLPMIGQYNVITAQGRTDPNQNTGISIHNCTFRAADELASSNRTLPTYLGRPWKEYS 460
           ++ RLPM GQ+N ITAQGRTDPNQNTG SI NCT +AAD+LASSN T+ TYLGRPWKEYS
Sbjct: 418 LYPRLPMQGQFNTITAQGRTDPNQNTGTSIQNCTIKAADDLASSNYTVKTYLGRPWKEYS 477

Query: 461 RTVVMQSFLDGLINPAGWQIWTGDFALSTLYYAEYDNRGPGSNTANRVTWPGYHAINATD 520
           RTVVMQS++DGLI+PAGW  W+GDFALSTLYYAEY+N GPGS+T NRVTWPGYH INATD
Sbjct: 478 RTVVMQSYIDGLIDPAGWMPWSGDFALSTLYYAEYNNTGPGSDTTNRVTWPGYHVINATD 537

Query: 521 AANFTVSNFLLGDQWLPRTGVPYTGGLIS 549
           AANFTVSNFLLGD WLP+TGVP+T GLIS
Sbjct: 538 AANFTVSNFLLGDGWLPQTGVPFTSGLIS 566

Length = 566
>gnl|CDD|178606 PLN03043, PLN03043, Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>gnl|CDD|216297 pfam01095, Pectinesterase, Pectinesterase Back     alignment and domain information
>gnl|CDD|178037 PLN02416, PLN02416, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215170 PLN02301, PLN02301, pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178087 PLN02468, PLN02468, putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178102 PLN02484, PLN02484, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215179 PLN02314, PLN02314, pectinesterase Back     alignment and domain information
>gnl|CDD|177852 PLN02201, PLN02201, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215114 PLN02170, PLN02170, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178504 PLN02916, PLN02916, pectinesterase family protein Back     alignment and domain information
>gnl|CDD|178346 PLN02745, PLN02745, Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215280 PLN02506, PLN02506, putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178521 PLN02933, PLN02933, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|177947 PLN02313, PLN02313, Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178574 PLN02995, PLN02995, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178106 PLN02488, PLN02488, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215130 PLN02217, PLN02217, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215535 PLN02990, PLN02990, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215379 PLN02708, PLN02708, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178301 PLN02698, PLN02698, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|177848 PLN02197, PLN02197, pectinesterase Back     alignment and domain information
>gnl|CDD|178051 PLN02432, PLN02432, putative pectinesterase Back     alignment and domain information
>gnl|CDD|215367 PLN02682, PLN02682, pectinesterase family protein Back     alignment and domain information
>gnl|CDD|178372 PLN02773, PLN02773, pectinesterase Back     alignment and domain information
>gnl|CDD|178113 PLN02497, PLN02497, probable pectinesterase Back     alignment and domain information
>gnl|CDD|215357 PLN02665, PLN02665, pectinesterase family protein Back     alignment and domain information
>gnl|CDD|215173 PLN02304, PLN02304, probable pectinesterase Back     alignment and domain information
>gnl|CDD|178276 PLN02671, PLN02671, pectinesterase Back     alignment and domain information
>gnl|CDD|178098 PLN02480, PLN02480, Probable pectinesterase Back     alignment and domain information
>gnl|CDD|215340 PLN02634, PLN02634, probable pectinesterase Back     alignment and domain information
>gnl|CDD|215117 PLN02176, PLN02176, putative pectinesterase Back     alignment and domain information
>gnl|CDD|227022 COG4677, PemB, Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|217858 pfam04043, PMEI, Plant invertase/pectin methylesterase inhibitor Back     alignment and domain information
>gnl|CDD|214860 smart00856, PMEI, Plant invertase/pectin methylesterase inhibitor Back     alignment and domain information
>gnl|CDD|233492 TIGR01614, PME_inhib, pectinesterase inhibitor domain Back     alignment and domain information
>gnl|CDD|236709 PRK10531, PRK10531, acyl-CoA thioesterase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 549
PLN02713566 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02217 670 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02313587 Pectinesterase/pectinesterase inhibitor 100.0
PLN02990572 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02468565 putative pectinesterase/pectinesterase inhibitor 100.0
PLN02484587 probable pectinesterase/pectinesterase inhibitor 100.0
PLN03043538 Probable pectinesterase/pectinesterase inhibitor; 100.0
PLN02301548 pectinesterase/pectinesterase inhibitor 100.0
PLN02314586 pectinesterase 100.0
PLN02416541 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02197588 pectinesterase 100.0
PLN02506537 putative pectinesterase/pectinesterase inhibitor 100.0
PLN02745596 Putative pectinesterase/pectinesterase inhibitor 100.0
PLN02995539 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02488509 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02201520 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02933530 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02708553 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02170529 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02916502 pectinesterase family protein 100.0
PLN02698497 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02671359 pectinesterase 100.0
PLN02176340 putative pectinesterase 100.0
PLN02682369 pectinesterase family protein 100.0
PLN02497331 probable pectinesterase 100.0
PLN02304379 probable pectinesterase 100.0
PLN02634359 probable pectinesterase 100.0
PLN02665366 pectinesterase family protein 100.0
PLN02773317 pectinesterase 100.0
PLN02432293 putative pectinesterase 100.0
PF01095298 Pectinesterase: Pectinesterase; InterPro: IPR00007 100.0
PLN02480343 Probable pectinesterase 100.0
PRK10531422 acyl-CoA thioesterase; Provisional 100.0
COG4677405 PemB Pectin methylesterase [Carbohydrate transport 100.0
TIGR01614178 PME_inhib pectinesterase inhibitor domain. This mo 99.95
smart00856148 PMEI Plant invertase/pectin methylesterase inhibit 99.94
PF04043152 PMEI: Plant invertase/pectin methylesterase inhibi 99.91
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 98.67
PF07602246 DUF1565: Protein of unknown function (DUF1565); In 97.73
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 97.28
PF14592 425 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF 96.79
TIGR03808 455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 96.75
KOG1777 625 consensus Putative Zn-finger protein [General func 96.68
PRK10531422 acyl-CoA thioesterase; Provisional 96.15
PLN02480343 Probable pectinesterase 95.3
PLN02773317 pectinesterase 94.97
PLN02682369 pectinesterase family protein 94.75
PF01696386 Adeno_E1B_55K: Adenovirus EB1 55K protein / large 94.68
PF01095298 Pectinesterase: Pectinesterase; InterPro: IPR00007 94.51
PLN02432293 putative pectinesterase 94.47
PLN02933530 Probable pectinesterase/pectinesterase inhibitor 94.31
PLN02217 670 probable pectinesterase/pectinesterase inhibitor 93.65
PLN02497331 probable pectinesterase 93.52
PLN02304379 probable pectinesterase 93.4
PLN02176340 putative pectinesterase 93.36
PLN02708553 Probable pectinesterase/pectinesterase inhibitor 93.35
PLN02468565 putative pectinesterase/pectinesterase inhibitor 93.31
PLN02665366 pectinesterase family protein 93.29
PLN02745596 Putative pectinesterase/pectinesterase inhibitor 93.24
PLN02314586 pectinesterase 93.19
PLN02506537 putative pectinesterase/pectinesterase inhibitor 93.02
PLN02201520 probable pectinesterase/pectinesterase inhibitor 92.97
PLN03043538 Probable pectinesterase/pectinesterase inhibitor; 92.84
PLN02995539 Probable pectinesterase/pectinesterase inhibitor 92.78
PLN02170529 probable pectinesterase/pectinesterase inhibitor 92.77
PLN02916502 pectinesterase family protein 92.75
PLN02634359 probable pectinesterase 92.65
PLN02416541 probable pectinesterase/pectinesterase inhibitor 92.6
PLN02990572 Probable pectinesterase/pectinesterase inhibitor 92.47
PLN02313587 Pectinesterase/pectinesterase inhibitor 92.22
PLN02301548 pectinesterase/pectinesterase inhibitor 91.93
PLN02671359 pectinesterase 91.83
PLN02484587 probable pectinesterase/pectinesterase inhibitor 91.72
PLN02488509 probable pectinesterase/pectinesterase inhibitor 91.23
PLN02713566 Probable pectinesterase/pectinesterase inhibitor 90.92
PLN02698497 Probable pectinesterase/pectinesterase inhibitor 90.4
PLN02197588 pectinesterase 89.61
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 88.32
COG4677405 PemB Pectin methylesterase [Carbohydrate transport 81.62
COG3420 408 NosD Nitrous oxidase accessory protein [Inorganic 80.7
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information 
Probab=100.00  E-value=6.7e-139  Score=1138.15  Aligned_cols=544  Identities=70%  Similarity=1.119  Sum_probs=469.6

Q ss_pred             CCccchHHHHHHHHHHHhhccCccccccCC-CCCCchhhcccCCCCChhcHHHHhccCCCCCCHHHHHHHHHHHHHHHHH
Q 045495            1 MGSNLLLLITLPILISIPFFSNPTCAANFA-RKSRVTPETICKYTPNQSYCKSMLANAKQTTDIYTYGRFSFRKAFSQSR   79 (549)
Q Consensus         1 m~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~V~~~C~~T~yp~lC~ssLs~~p~~~dp~~L~~~al~~a~~~a~   79 (549)
                      |++++.++-   +|.+++|+.+..+.+..+ |-....++.+|+.|+||++|+++|++. ...+|++|++++|+++++++.
T Consensus         1 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~s~C~~T~YP~~C~ssLs~s-~~~d~~~l~~aaL~~tl~~a~   76 (566)
T PLN02713          1 MSSKLILLT---TLALLLLLFFSSSSASDPPPSTPVSPSTICNTTPDPSFCKSVLPHN-QPGNVYDYGRFSVRKSLSQSR   76 (566)
T ss_pred             CchhHHHHH---HHHHHHHHhcchhhhcCCCcCCCCCCccccCCCCChHHHHHHhccc-cCCCHHHHHHHHHHHHHHHHH
Confidence            666655544   344344444444444444 344468999999999999999999864 356899999999999999999


Q ss_pred             HHHHHHHHHhcCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccChhhHHHHHHHhhhhHHHHHhhhh
Q 045495           80 KFLDLIDNYLKRPST-LSTAAIRALEDCYLLADLNMDYFSRSFQTVNNTSQILPAKQADDVQTRLSAILTNQQTCLDGLQ  158 (549)
Q Consensus        80 ~a~~~i~~ll~~~~~-~~~~~k~AL~DC~el~~dAld~L~~S~~~l~~~~~~~~~~~~~Dv~TWLSAAlT~q~TC~DgF~  158 (549)
                      .+...++++....+. ++++++.||+||+|||++++|+|++++.+|+..+.....++.+|+|||||||||||+||+|||.
T Consensus        77 ~a~~~vs~L~~~~~~~~~~r~k~AL~DC~ELlddavD~L~~Sl~~l~~~~~~~~~~~~~DvqTWLSAALTnq~TClDGF~  156 (566)
T PLN02713         77 KFLSLVDRYLKRNSTLLSKSAIRALEDCQFLAGLNIDFLLSSFETVNSSSKTLSDPQADDVQTLLSAILTNQQTCLDGLQ  156 (566)
T ss_pred             HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHhhcchhhhhhhhh
Confidence            999999988654323 3889999999999999999999999999998543323457799999999999999999999998


Q ss_pred             cccccccccccccccchhhHHHHHHHHHhhcccccccccCC-cccC--CCCcccccCCCCCCCCccccchhhhHHHhhcc
Q 045495          159 AAVSAWSTANGLSVPLLDDTKLSSVLLALFKKGWVGQKRKG-TIWQ--MPTGTQRLFGKDGRLPLIMSDENRAIYEKVCK  235 (549)
Q Consensus       159 e~~~~~~~~~~l~~~l~~v~~L~SNALAiv~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~p~w~~~~~~~~~~~~~~  235 (549)
                      +.+.+..+++.|...+.++++|+||||||++..+....... ....  ...+++++. .+++||+||+..++++++.+.+
T Consensus       157 ~~~~~~~~k~~v~~~l~nvt~LtSNaLAlv~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~P~w~~~~d~~~~~~~~~  235 (566)
T PLN02713        157 AASSAWSVRNGLAVPLSNDTKLYSVSLALFTKGWVPKKKKGRPKTKRKAHFKPFRAF-RNGRLPLKMTEKTRAVYESVSR  235 (566)
T ss_pred             ccccchhHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccccccchhcc-ccCCCCcCcccccccccccccc
Confidence            76543356778889999999999999999996322111110 0000  011234443 2357999999999898988889


Q ss_pred             cccccCCCCCccccceEEEccCCCCCCccHHHHHHHCcCCCCCCCceEEEEEeCcEEeeEEEEeccCCceEEEeccccce
Q 045495          236 RKLNSGDGRGVLVSKIVTVSQDGRGMFSTINDAINAAPNDTDVSNGYFLIYIKDGVYQEYVSIAKNKINLMMIGDGINQT  315 (549)
Q Consensus       236 r~~~~~~~~~~~~~~~~vV~~dg~g~f~TIq~Ai~aap~~~~~~~~~~~I~I~~G~Y~E~v~i~~~k~~v~l~G~g~~~t  315 (549)
                      ||||++......+..+++|++||+|+|+|||+||+++|.+...+.+|++|+||||+|+|+|+|+++|+||+|+|+|+++|
T Consensus       236 R~ll~~~~~~~~~~~~~~Va~dGsG~f~TIq~Av~a~p~~~~~~~~~~vI~Ik~G~Y~E~V~i~~~k~~i~l~G~g~~~T  315 (566)
T PLN02713        236 RKLLDGDANAVLVSDIVTVNQNGTGNFTTINDAVAAAPNNTDGSNGYFVIYVTAGVYEEYVSIPKNKKYLMMIGDGINQT  315 (566)
T ss_pred             chhhcCccccccCCceEEECCCCCCCCCCHHHHHHhhhcccCCCCceEEEEEcCcEEEEEEEecCCCceEEEEecCCCCc
Confidence            99998754323344579999999999999999999999874334679999999999999999999999999999999999


Q ss_pred             EEeccCcCCCCccccccccc-----------------CCCCccceeeEeecCCceEEEeceeecccceEEeccCceEEEe
Q 045495          316 IITGNRSAVDGWTTFNSATF-----------------AGPSKFQAVALRSGGDLSTFYSCSFEGYQDTLYTHSLRQFYRE  378 (549)
Q Consensus       316 iI~~~~~~~~g~~t~~saT~-----------------~g~~~~QAvAl~~~~d~~~f~~C~~~g~QDTL~~~~gr~~~~~  378 (549)
                      ||+|++++.+|++||+||||                 +|+.+|||||||++|||++||+|+|+|||||||+|++||||++
T Consensus       316 iIt~~~~~~~g~~T~~SaT~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~G~QDTLy~~~~Rqyy~~  395 (566)
T PLN02713        316 VITGNRSVVDGWTTFNSATFAVVGQNFVAVNITFRNTAGPAKHQAVALRSGADLSTFYSCSFEAYQDTLYTHSLRQFYRE  395 (566)
T ss_pred             EEEcCCcccCCCccccceeEEEECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeeccCCcceEECCCCEEEEe
Confidence            99999999999999999998                 7888999999999999999999999999999999999999999


Q ss_pred             cEEeeceeeEecCceEEeeeeeEEEeecCCCceEEEEecCCCCCCCCeEEEEEccEEeecCCcccCCCCcceEeecCCCC
Q 045495          379 CDIYGTIDFILGNAAVVLQNCNIHARLPMIGQYNVITAQGRTDPNQNTGISIHNCTFRAADELASSNRTLPTYLGRPWKE  458 (549)
Q Consensus       379 c~I~G~VDfIfG~a~a~f~~c~i~~~~~~~~~~~~itA~gr~~~~~~~G~vf~~c~i~~~~~~~~~~~~~~~yLGRpW~~  458 (549)
                      |+|+|+||||||+|++|||||+|+++++++++.|+||||||++|++++||||+||+|++++++.+.....++||||||++
T Consensus       396 C~I~GtVDFIFG~a~avfq~C~i~~~~~~~~~~~~iTAq~r~~~~~~~G~vf~~c~i~~~~~~~~~~~~~~~yLGRPW~~  475 (566)
T PLN02713        396 CDIYGTVDFIFGNAAVVFQNCNLYPRLPMQGQFNTITAQGRTDPNQNTGTSIQNCTIKAADDLASSNYTVKTYLGRPWKE  475 (566)
T ss_pred             eEEecccceecccceEEEeccEEEEecCCCCCcceeeecCCCCCCCCCEEEEEcCEEecCCcccccccccceeeecCCCC
Confidence            99999999999999999999999999988888999999999999999999999999999988876666678999999999


Q ss_pred             CCcEEEeccCCCCccCCCCCcCCCCCCCCCccEEEEecccCCCCCCCCcccCCCcccCCHHHHhchhhhccccCCCCcCC
Q 045495          459 YSRTVVMQSFLDGLINPAGWQIWTGDFALSTLYYAEYDNRGPGSNTANRVTWPGYHAINATDAANFTVSNFLLGDQWLPR  538 (549)
Q Consensus       459 ~sr~v~~~s~~~~~I~p~GW~~w~~~~~~~~~~f~Ey~n~GpGa~~s~Rv~w~~~~~l~~~ea~~~t~~~fi~g~~W~p~  538 (549)
                      |||||||+|+|+++|+|+||.+|++++.++|+||+||+|+|||+++++||+|+|+|+|+++||.+||+.+||+|++|+|.
T Consensus       476 ysr~V~~~s~~~~~I~p~GW~~w~~~~~~~t~~y~Ey~n~GpGa~~s~Rv~w~g~~~l~~~ea~~ft~~~fi~g~~Wl~~  555 (566)
T PLN02713        476 YSRTVVMQSYIDGLIDPAGWMPWSGDFALSTLYYAEYNNTGPGSDTTNRVTWPGYHVINATDAANFTVSNFLLGDGWLPQ  555 (566)
T ss_pred             cceEEEEecccCCeecccccCCCCCCCCCCceEEEEecccCCCCCcCCCccccceeecCHHHhhhccHhheeCCCCcCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCC
Q 045495          539 TGVPYTGGLIS  549 (549)
Q Consensus       539 ~~~p~~~g~~~  549 (549)
                      +||||++||++
T Consensus       556 ~gvp~~~gl~~  566 (566)
T PLN02713        556 TGVPFTSGLIS  566 (566)
T ss_pred             CCCCcccccCC
Confidence            99999999974

>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PLN02698 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>PLN02176 putative pectinesterase Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>PLN02497 probable pectinesterase Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR01614 PME_inhib pectinesterase inhibitor domain Back     alignment and domain information
>smart00856 PMEI Plant invertase/pectin methylesterase inhibitor Back     alignment and domain information
>PF04043 PMEI: Plant invertase/pectin methylesterase inhibitor; InterPro: IPR006501 This entry represents a plant domain of about 200 amino acids, characterised by four conserved cysteine residues Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>KOG1777 consensus Putative Zn-finger protein [General function prediction only] Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02497 probable pectinesterase Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>PLN02176 putative pectinesterase Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02698 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query549
1xg2_A317 Crystal Structure Of The Complex Between Pectin Met 2e-90
1gq8_A319 Pectin Methylesterase From Carrot Length = 319 2e-87
1qjv_A342 Pectin Methylesterase Pema From Erwinia Chrysanthem 1e-15
2ntb_A342 Crystal Structure Of Pectin Methylesterase In Compl 1e-15
3uw0_A364 Pectin Methylesterase From Yersinia Enterocolitica 3e-15
2nsp_A342 Crystal Structure Of Pectin Methylesterase D178a Mu 1e-14
>pdb|1XG2|A Chain A, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein Length = 317 Back     alignment and structure 
Iteration: 1

 Score =  329 bits (844), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 167/313 (53%), Positives = 203/313 (64%), Gaps = 21/313 (6%)
Query: 253 TVSQDGRGMFSTINDAINAAPNDTDVSNGYFLIYIKDGVYQEYVSIAKNKINLMMIGDGI 312
            V+QDG G + T+ +A+ AAP   D S   ++IY+K G Y+E V +A NK+NLM++GDG+
Sbjct: 6   VVAQDGTGDYQTLAEAVAAAP---DKSKTRYVIYVKRGTYKENVEVASNKMNLMIVGDGM 62
Query: 313 NQTIITGNRSAVDGWTTFNSATFA-----------------GPSKFQAVALRSGGDLSTF 355
             T ITG+ + VDG TTF SAT A                 GP+K QAVALR G D+S  
Sbjct: 63  YATTITGSLNVVDGSTTFRSATLAAVGQGFILQDICIQNTAGPAKDQAVALRVGADMSVI 122
Query: 356 YSCSFEGYQDTLYTHSLRQFYRECDIYGTIDFILGNAAVVLQNCNIHARLPMIGQYNVIT 415
             C  + YQDTLY HS RQFYR+  + GT+DFI GNAAVV Q C + AR P   Q N++T
Sbjct: 123 NRCRIDAYQDTLYAHSQRQFYRDSYVTGTVDFIFGNAAVVFQKCQLVARKPGKYQQNMVT 182
Query: 416 AQGRTDPNQNTGISIHNCTFRAADELASSNRTLPTYLGRPWKEYSRTVVMQSFLDGLINP 475
           AQGRTDPNQ TG SI  C   A+ +L    +  PTYLGRPWKEYSRTVVM+S+L GLINP
Sbjct: 183 AQGRTDPNQATGTSIQFCNIIASSDLEPVLKEFPTYLGRPWKEYSRTVVMESYLGGLINP 242
Query: 476 AGWQIWTGDFALSTLYYAEYDNRGPGSNTANRVTWPGYHAI-NATDAANFTVSNFLLGDQ 534
           AGW  W GDFAL TLYY E+ N GPG+ T+ RV WPGYH I +   A  FTV+  + G  
Sbjct: 243 AGWAEWDGDFALKTLYYGEFMNNGPGAGTSKRVKWPGYHVITDPAKAMPFTVAKLIQGGS 302
Query: 535 WLPRTGVPYTGGL 547
           WL  TGV Y  GL
Sbjct: 303 WLRSTGVAYVDGL 315
>pdb|1GQ8|A Chain A, Pectin Methylesterase From Carrot Length = 319 Back     alignment and structure
>pdb|1QJV|A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi Length = 342 Back     alignment and structure
>pdb|2NTB|A Chain A, Crystal Structure Of Pectin Methylesterase In Complex With Hexasaccharide V Length = 342 Back     alignment and structure
>pdb|3UW0|A Chain A, Pectin Methylesterase From Yersinia Enterocolitica Length = 364 Back     alignment and structure
>pdb|2NSP|A Chain A, Crystal Structure Of Pectin Methylesterase D178a Mutant In Complex With Hexasaccharide I Length = 342 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query549
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 1e-159
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 1e-158
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 1e-115
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 1e-108
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 2e-89
1x91_A153 Invertase/pectin methylesterase inhibitor family p 4e-21
1xg2_B153 Pectinesterase inhibitor; protein-protein complex, 2e-17
2cj4_A150 Invertase inhibitor; protein binding, four-helix b 4e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-07
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Length = 319 Back     alignment and structure
 Score =  454 bits (1170), Expect = e-159
 Identities = 166/318 (52%), Positives = 204/318 (64%), Gaps = 21/318 (6%)

Query: 248 VSKIVTVSQDGRGMFSTINDAINAAPNDTDVSNGYFLIYIKDGVYQEYVSIAKNKINLMM 307
           V   V V+ DG G + T+++A+ AAP D   S   ++I IK GVY+E V + K K N+M 
Sbjct: 5   VGPNVVVAADGSGDYKTVSEAVAAAPED---SKTRYVIRIKAGVYRENVDVPKKKKNIMF 61

Query: 308 IGDGINQTIITGNRSAVDGWTTFNSATF-----------------AGPSKFQAVALRSGG 350
           +GDG   TIIT +++  DG TTFNSAT                  AG +K QAVALR G 
Sbjct: 62  LGDGRTSTIITASKNVQDGSTTFNSATVAAVGAGFLARDITFQNTAGAAKHQAVALRVGS 121

Query: 351 DLSTFYSCSFEGYQDTLYTHSLRQFYRECDIYGTIDFILGNAAVVLQNCNIHARLPMIGQ 410
           DLS FY C    YQD+LY HS RQF+  C I GT+DFI GNAAVVLQ+C+IHAR P  GQ
Sbjct: 122 DLSAFYRCDILAYQDSLYVHSNRQFFINCFIAGTVDFIFGNAAVVLQDCDIHARRPGSGQ 181

Query: 411 YNVITAQGRTDPNQNTGISIHNCTFRAADELASSNRTLPTYLGRPWKEYSRTVVMQSFLD 470
            N++TAQGRTDPNQNTGI I      A  +L     + PTYLGRPWKEYSRTVVMQS + 
Sbjct: 182 KNMVTAQGRTDPNQNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEYSRTVVMQSSIT 241

Query: 471 GLINPAGWQIWTGDFALSTLYYAEYDNRGPGSNTANRVTWPGYHAI-NATDAANFTVSNF 529
            +INPAGW  W G+FAL TLYY EY N G G+ T+ RVTW G+  I ++T+A  FT  +F
Sbjct: 242 NVINPAGWFPWDGNFALDTLYYGEYQNTGAGAATSGRVTWKGFKVITSSTEAQGFTPGSF 301

Query: 530 LLGDQWLPRTGVPYTGGL 547
           + G  WL  T  P++ GL
Sbjct: 302 IAGGSWLKATTFPFSLGL 319
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Length = 317 Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Length = 342 Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Length = 364 Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Length = 422 Back     alignment and structure
>1x91_A Invertase/pectin methylesterase inhibitor family protein; four-helix bundle, alpha hairpin, disulfide bridge, domain- swapping, linker; 1.50A {Arabidopsis thaliana} SCOP: a.29.6.1 PDB: 1x8z_A 1x90_A Length = 153 Back     alignment and structure
>1xg2_B Pectinesterase inhibitor; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Actinidia chinensis} Length = 153 Back     alignment and structure
>2cj4_A Invertase inhibitor; protein binding, four-helix bundle, helical hairpin; 1.63A {Nicotiana tabacum} SCOP: a.29.6.1 PDB: 2cj5_A 2cj6_A 2cj7_A 2cj8_A 1rj1_A 1rj4_A* 2xqr_B* Length = 150 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query549
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 100.0
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 100.0
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 100.0
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 100.0
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 100.0
1x91_A153 Invertase/pectin methylesterase inhibitor family p 99.96
1xg2_B153 Pectinesterase inhibitor; protein-protein complex, 99.96
2cj4_A150 Invertase inhibitor; protein binding, four-helix b 99.95
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 99.17
1dbg_A 506 Chondroitinase B; beta helix, polysaccharide lyase 98.68
3eqn_A 758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 97.21
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 97.18
2inu_A410 Insulin fructotransferase; right-handed parallel b 97.13
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 95.34
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 95.07
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 94.94
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 94.8
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 94.56
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 93.92
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 93.66
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 93.32
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 92.67
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 92.26
2uvf_A 608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 90.24
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 90.15
1h80_A 464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 89.05
1rmg_A 422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 88.81
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 88.25
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 87.7
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 87.07
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 86.03
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 84.91
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 83.4
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 83.01
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 82.71
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 82.1
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 80.92
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
Probab=100.00  E-value=7e-91  Score=717.00  Aligned_cols=297  Identities=56%  Similarity=0.967  Sum_probs=282.1

Q ss_pred             cceEEEccCCCCCCccHHHHHHHCcCCCCCCCceEEEEEeCcEEeeEEEEeccCCceEEEeccccceEEeccCcCCCCcc
Q 045495          249 SKIVTVSQDGRGMFSTINDAINAAPNDTDVSNGYFLIYIKDGVYQEYVSIAKNKINLMMIGDGINQTIITGNRSAVDGWT  328 (549)
Q Consensus       249 ~~~~vV~~dg~g~f~TIq~Ai~aap~~~~~~~~~~~I~I~~G~Y~E~v~i~~~k~~v~l~G~g~~~tiI~~~~~~~~g~~  328 (549)
                      +++++|++||+|+|+|||+||+++|.+   +++|++|+|+||+|+|+|+|++.|++|||+|+|+++|+|+++.+..+|++
T Consensus         2 ~~~i~V~~dGsg~f~TIq~AI~aap~~---~~~~~~I~I~~G~Y~E~V~I~~~k~~Itl~G~g~~~tiI~~~~~~~~g~~   78 (317)
T 1xg2_A            2 IANAVVAQDGTGDYQTLAEAVAAAPDK---SKTRYVIYVKRGTYKENVEVASNKMNLMIVGDGMYATTITGSLNVVDGST   78 (317)
T ss_dssp             CCSEEECTTSCSSBSSHHHHHHHSCSS---CSSCEEEEECSEEEECCEEECTTSCSEEEEESCTTTEEEEECCCTTTTCC
T ss_pred             CceEEECCCCCCCcccHHHHHhhcccC---CCceEEEEEcCCEEeeeeecCCCCCcEEEEEcCCCCcEEEecccccCCCc
Confidence            468999999999999999999999998   57899999999999999999999999999999999999999998888899


Q ss_pred             ccccccc-----------------CCCCccceeeEeecCCceEEEeceeecccceEEeccCceEEEecEEeeceeeEecC
Q 045495          329 TFNSATF-----------------AGPSKFQAVALRSGGDLSTFYSCSFEGYQDTLYTHSLRQFYRECDIYGTIDFILGN  391 (549)
Q Consensus       329 t~~saT~-----------------~g~~~~QAvAl~~~~d~~~f~~C~~~g~QDTL~~~~gr~~~~~c~I~G~VDfIfG~  391 (549)
                      |+.|+||                 +|+.++|||||++.+|+++||||+|+|||||||+|++||||++|+|+|+||||||+
T Consensus        79 t~~satv~v~a~~f~~~~lt~~Nt~g~~~~qAvAl~v~~d~~~f~~c~f~g~QDTLy~~~~r~~~~~c~I~G~vDFIfG~  158 (317)
T 1xg2_A           79 TFRSATLAAVGQGFILQDICIQNTAGPAKDQAVALRVGADMSVINRCRIDAYQDTLYAHSQRQFYRDSYVTGTVDFIFGN  158 (317)
T ss_dssp             SGGGCSEEECSTTCEEESCEEEECCCGGGCCCCSEEECCTTEEEESCEEECSTTCEEECSSEEEEESCEEEESSSCEEEC
T ss_pred             ccceeEEEEECCCEEEEEeEEecccCCccCceEEEEEeCCcEEEEEeEeCccccceeecCccEEEEeeEEEeceeEEcCC
Confidence            9999988                 56667999999999999999999999999999999999999999999999999999


Q ss_pred             ceEEeeeeeEEEeecCCCceEEEEecCCCCCCCCeEEEEEccEEeecCCcccCCCCcceEeecCCCCCCcEEEeccCCCC
Q 045495          392 AAVVLQNCNIHARLPMIGQYNVITAQGRTDPNQNTGISIHNCTFRAADELASSNRTLPTYLGRPWKEYSRTVVMQSFLDG  471 (549)
Q Consensus       392 a~a~f~~c~i~~~~~~~~~~~~itA~gr~~~~~~~G~vf~~c~i~~~~~~~~~~~~~~~yLGRpW~~~sr~v~~~s~~~~  471 (549)
                      |+++||+|+|+++++.+++.++||||+|+++.+++||||+||+|++++++.+.....++||||||++|+|+|||+|+|++
T Consensus       159 ~~avf~~c~i~~~~~~~~~~~~itA~~r~~~~~~~G~vf~~c~i~~~~~~~~~~~~~~~yLGRpW~~~sr~v~~~t~~~~  238 (317)
T 1xg2_A          159 AAVVFQKCQLVARKPGKYQQNMVTAQGRTDPNQATGTSIQFCNIIASSDLEPVLKEFPTYLGRPWKEYSRTVVMESYLGG  238 (317)
T ss_dssp             CEEEEESCEEEECCCSTTCCEEEEEECCCCTTSCCEEEEESCEEEECTTTGGGTTTSCEEEECCSSTTCEEEEESCEECT
T ss_pred             ceEEEeeeEEEEeccCCCCccEEEecCcCCCCCCcEEEEECCEEecCCCccccccceeEEeecccCCCceEEEEecccCC
Confidence            99999999999998877888999999999999999999999999999887655556689999999999999999999999


Q ss_pred             ccCCCCCcCCCCCCCCCccEEEEecccCCCCCCCCcccCCCcccCC-HHHHhchhhhccccCCCCcCCCCCCCCCCCC
Q 045495          472 LINPAGWQIWTGDFALSTLYYAEYDNRGPGSNTANRVTWPGYHAIN-ATDAANFTVSNFLLGDQWLPRTGVPYTGGLI  548 (549)
Q Consensus       472 ~I~p~GW~~w~~~~~~~~~~f~Ey~n~GpGa~~s~Rv~w~~~~~l~-~~ea~~~t~~~fi~g~~W~p~~~~p~~~g~~  548 (549)
                      +|+|+||.+|++++++++++|+||+|+|||+++++||+|+++|+|+ ++||++|++.+||+|++|+|.+||||.+||.
T Consensus       239 ~I~p~GW~~w~~~~~~~t~~~~Ey~n~GpGa~~~~Rv~w~~~~~l~~~~ea~~~t~~~~i~g~~W~p~~~~~~~~~~~  316 (317)
T 1xg2_A          239 LINPAGWAEWDGDFALKTLYYGEFMNNGPGAGTSKRVKWPGYHVITDPAKAMPFTVAKLIQGGSWLRSTGVAYVDGLY  316 (317)
T ss_dssp             TBCTTCSCCSSTTTTTTTCEEEEESCBSTTCCCTTSCCCTTEEEECCHHHHGGGSHHHHSCTHHHHGGGCCCCCCSSC
T ss_pred             cccccccccCCCCCCcCceEEEEEcCCCCCCCcccccccccccccCCHHHHHHhhHHhhcCCCCCcCCCCcccccccc
Confidence            9999999999999899999999999999999999999999988885 6899999999999999999999999999985
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure
>1x91_A Invertase/pectin methylesterase inhibitor family protein; four-helix bundle, alpha hairpin, disulfide bridge, domain- swapping, linker; 1.50A {Arabidopsis thaliana} SCOP: a.29.6.1 PDB: 1x8z_A 1x90_A Back     alignment and structure
>1xg2_B Pectinesterase inhibitor; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Actinidia chinensis} Back     alignment and structure
>2cj4_A Invertase inhibitor; protein binding, four-helix bundle, helical hairpin; 1.63A {Nicotiana tabacum} SCOP: a.29.6.1 PDB: 2cj5_A 2cj6_A 2cj7_A 2cj8_A 1rj1_A 1rj4_A* 2xqr_B* Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 549
d1gq8a_319 b.80.1.5 (A:) Pectin methylesterase PemA {Carrot ( 1e-134
d1qjva_342 b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia 2e-78
d1x91a_149 a.29.6.1 (A:) Pectin methylesterase inhibitor 1, P 6e-19
d2cj4a1147 a.29.6.1 (A:4-150) Invertase inhibitor {Common tob 4e-16
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Length = 319 Back     information, alignment and structure

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectin methylesterase
domain: Pectin methylesterase PemA
species: Carrot (Daucus carota) [TaxId: 4039]

 Score =  389 bits (1001), Expect = e-134
 Identities = 165/314 (52%), Positives = 203/314 (64%), Gaps = 21/314 (6%)

Query: 252 VTVSQDGRGMFSTINDAINAAPNDTDVSNGYFLIYIKDGVYQEYVSIAKNKINLMMIGDG 311
           V V+ DG G + T+++A+ AAP D   S   ++I IK GVY+E V + K K N+M +GDG
Sbjct: 9   VVVAADGSGDYKTVSEAVAAAPED---SKTRYVIRIKAGVYRENVDVPKKKKNIMFLGDG 65

Query: 312 INQTIITGNRSAVDGWTTFNSATF-----------------AGPSKFQAVALRSGGDLST 354
              TIIT +++  DG TTFNSAT                  AG +K QAVALR G DLS 
Sbjct: 66  RTSTIITASKNVQDGSTTFNSATVAAVGAGFLARDITFQNTAGAAKHQAVALRVGSDLSA 125

Query: 355 FYSCSFEGYQDTLYTHSLRQFYRECDIYGTIDFILGNAAVVLQNCNIHARLPMIGQYNVI 414
           FY C    YQD+LY HS RQF+  C I GT+DFI GNAAVVLQ+C+IHAR P  GQ N++
Sbjct: 126 FYRCDILAYQDSLYVHSNRQFFINCFIAGTVDFIFGNAAVVLQDCDIHARRPGSGQKNMV 185

Query: 415 TAQGRTDPNQNTGISIHNCTFRAADELASSNRTLPTYLGRPWKEYSRTVVMQSFLDGLIN 474
           TAQGRTDPNQNTGI I      A  +L     + PTYLGRPWKEYSRTVVMQS +  +IN
Sbjct: 186 TAQGRTDPNQNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEYSRTVVMQSSITNVIN 245

Query: 475 PAGWQIWTGDFALSTLYYAEYDNRGPGSNTANRVTWPGYHAI-NATDAANFTVSNFLLGD 533
           PAGW  W G+FAL TLYY EY N G G+ T+ RVTW G+  I ++T+A  FT  +F+ G 
Sbjct: 246 PAGWFPWDGNFALDTLYYGEYQNTGAGAATSGRVTWKGFKVITSSTEAQGFTPGSFIAGG 305

Query: 534 QWLPRTGVPYTGGL 547
            WL  T  P++ GL
Sbjct: 306 SWLKATTFPFSLGL 319
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Length = 342 Back     information, alignment and structure
>d1x91a_ a.29.6.1 (A:) Pectin methylesterase inhibitor 1, PMEI1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 149 Back     information, alignment and structure
>d2cj4a1 a.29.6.1 (A:4-150) Invertase inhibitor {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 147 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query549
d1gq8a_319 Pectin methylesterase PemA {Carrot (Daucus carota) 100.0
d1qjva_342 Pectin methylesterase PemA {Erwinia chrysanthemi [ 100.0
d1x91a_149 Pectin methylesterase inhibitor 1, PMEI1 {Thale cr 99.94
d2cj4a1147 Invertase inhibitor {Common tobacco (Nicotiana tab 99.94
d1ru4a_400 Pectate transeliminase {Erwinia chrysanthemi [TaxI 98.45
d1ofla_ 481 Chondroitinase B {Pedobacter heparinus [TaxId: 984 97.37
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 96.18
d1gq8a_319 Pectin methylesterase PemA {Carrot (Daucus carota) 95.48
d1qjva_342 Pectin methylesterase PemA {Erwinia chrysanthemi [ 94.61
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectin methylesterase
domain: Pectin methylesterase PemA
species: Carrot (Daucus carota) [TaxId: 4039]

Probab=100.00  E-value=3.7e-94  Score=736.62  Aligned_cols=298  Identities=55%  Similarity=0.939  Sum_probs=284.0

Q ss_pred             cccceEEEccCCCCCCccHHHHHHHCcCCCCCCCceEEEEEeCcEEeeEEEEeccCCceEEEeccccceEEeccCcCCCC
Q 045495          247 LVSKIVTVSQDGRGMFSTINDAINAAPNDTDVSNGYFLIYIKDGVYQEYVSIAKNKINLMMIGDGINQTIITGNRSAVDG  326 (549)
Q Consensus       247 ~~~~~~vV~~dg~g~f~TIq~Ai~aap~~~~~~~~~~~I~I~~G~Y~E~v~i~~~k~~v~l~G~g~~~tiI~~~~~~~~g  326 (549)
                      .++++++|++||+|+|+|||+||+++|.+   ++.|++|+|+||+|+|+|+|+++|++|+|+|+|++.|+|+++.+..++
T Consensus         4 ~~~p~i~V~~dGsGdf~TIq~AIda~p~~---~~~~~~I~I~~G~Y~E~V~I~~~k~~itl~G~g~~~tiIt~~~~~~~~   80 (319)
T d1gq8a_           4 TVGPNVVVAADGSGDYKTVSEAVAAAPED---SKTRYVIRIKAGVYRENVDVPKKKKNIMFLGDGRTSTIITASKNVQDG   80 (319)
T ss_dssp             SSCCSEEECTTSCSSBSSHHHHHHHSCSS---CSSCEEEEECSEEEECCEEECTTCCSEEEEESCTTTEEEEECCCTTTT
T ss_pred             cCCCCEEECCCCCCCccCHHHHHhhCccC---CCCcEEEEEcCceEEEEEEECCCCCeEEEEEcCCCCcEEEecccccCC
Confidence            46789999999999999999999999987   678999999999999999999999999999999999999999988888


Q ss_pred             ccccccccc-----------------CCCCccceeeEeecCCceEEEeceeecccceEEeccCceEEEecEEeeceeeEe
Q 045495          327 WTTFNSATF-----------------AGPSKFQAVALRSGGDLSTFYSCSFEGYQDTLYTHSLRQFYRECDIYGTIDFIL  389 (549)
Q Consensus       327 ~~t~~saT~-----------------~g~~~~QAvAl~~~~d~~~f~~C~~~g~QDTL~~~~gr~~~~~c~I~G~VDfIf  389 (549)
                      .+|+.|+||                 +|+.++|||||++.+||++||+|+|+|||||||++.|||||++|+|+|+|||||
T Consensus        81 ~~t~~sat~~v~~~~f~a~nitf~Nt~g~~~~QAvAl~v~gd~~~fy~c~f~G~QDTL~~~~gr~yf~~c~IeG~vDFIf  160 (319)
T d1gq8a_          81 STTFNSATVAAVGAGFLARDITFQNTAGAAKHQAVALRVGSDLSAFYRCDILAYQDSLYVHSNRQFFINCFIAGTVDFIF  160 (319)
T ss_dssp             CCTGGGCSEEECSTTCEEEEEEEEECCCGGGCCCCSEEECCTTEEEEEEEEECSTTCEEECSSEEEEESCEEEESSSCEE
T ss_pred             CccccccceeeecCCeEEEeeEEEeCCCCCCCcEEEEEecCcceEEEcceecccCCeeEECCCCEEEEeeEEEeeccEEe
Confidence            889999988                 577789999999999999999999999999999999999999999999999999


Q ss_pred             cCceEEeeeeeEEEeecCCCceEEEEecCCCCCCCCeEEEEEccEEeecCCcccCCCCcceEeecCCCCCCcEEEeccCC
Q 045495          390 GNAAVVLQNCNIHARLPMIGQYNVITAQGRTDPNQNTGISIHNCTFRAADELASSNRTLPTYLGRPWKEYSRTVVMQSFL  469 (549)
Q Consensus       390 G~a~a~f~~c~i~~~~~~~~~~~~itA~gr~~~~~~~G~vf~~c~i~~~~~~~~~~~~~~~yLGRpW~~~sr~v~~~s~~  469 (549)
                      |+|+++||+|+|+++++..++.|+||||+|+++.+++||||++|+|++++++.+.....++||||||++|+|+||++|+|
T Consensus       161 G~~~a~f~~c~i~~~~~~~~~~~~itA~~r~~~~~~~Gfvf~~c~i~~~~~~~~~~~~~~~yLGRpW~~~s~vvf~~t~l  240 (319)
T d1gq8a_         161 GNAAVVLQDCDIHARRPGSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEYSRTVVMQSSI  240 (319)
T ss_dssp             ESCEEEEESCEEEECCCSTTCCEEEEEECCCSTTCCCEEEEESCEEEECTTTGGGGGGSCEEEECCSSTTCEEEEESCEE
T ss_pred             cCceeEeecceeeeecCCCCCceEEEEcCcCCCCCCcEEEEEeeEEeCCCCccccccccceeccCCCCCcceEEEEeccc
Confidence            99999999999999988888889999999999999999999999999999876665667899999999999999999999


Q ss_pred             CCccCCCCCcCCCCCCCCCccEEEEecccCCCCCCCCcccCCCcc-cCCHHHHhchhhhccccCCCCcCCCCCCCCCCC
Q 045495          470 DGLINPAGWQIWTGDFALSTLYYAEYDNRGPGSNTANRVTWPGYH-AINATDAANFTVSNFLLGDQWLPRTGVPYTGGL  547 (549)
Q Consensus       470 ~~~I~p~GW~~w~~~~~~~~~~f~Ey~n~GpGa~~s~Rv~w~~~~-~l~~~ea~~~t~~~fi~g~~W~p~~~~p~~~g~  547 (549)
                      +++|.|+||.+|++.+++++++|+||+|+|||+++++||+|++++ +|+++||.+|+.++||+|++|+|.+||||..||
T Consensus       241 ~~~I~p~GW~~w~~~~~~~t~~f~Ey~n~GpGa~~s~Rv~w~~~~~~l~~~ea~~ft~~~fi~G~~Wl~~t~~p~~~~l  319 (319)
T d1gq8a_         241 TNVINPAGWFPWDGNFALDTLYYGEYQNTGAGAATSGRVTWKGFKVITSSTEAQGFTPGSFIAGGSWLKATTFPFSLGL  319 (319)
T ss_dssp             CTTBCTTCCCCSSTTTTTTTCEEEEESCBSGGGCCTTCCCCTTEEECCCHHHHHTTSHHHHSCGGGTSGGGTSCCCCCC
T ss_pred             ccccccccccccCCCCccCceEEEEEeccCCCcCcCCcccccceeeeCCHHHHHhhhHHhhcCCCcccccCCCccCCCC
Confidence            999999999999998899999999999999999999999999864 679999999999999999999999999999997
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1x91a_ a.29.6.1 (A:) Pectin methylesterase inhibitor 1, PMEI1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2cj4a1 a.29.6.1 (A:4-150) Invertase inhibitor {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure