Citrus Sinensis ID: 045509

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-
Protein Sequence
MDDSSKEKSDRGQSTWKLGEPPDAGCVSYILSEFGWNLQEHESSTSYFAADHERSELAGNISSSFPAETTTDGGGLINPGRSADVSTSNPSVSSSSSEDPTEKSTGSGGKPPEIPSKARKKGQKRIRQPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSEDPTIVITTYEGQHCHHTVGFPRGGLINHEAAAFASHLTHAIPPYYYHQGVQITQETPGIKQQSHEEELIPVEAREHEPNALPEPPALPPPTDEGLLGDIVPPGMRNR
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccHHcccccccEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccccccccccccHHHcccEEEccccccccEEEEccccccccEEEEEcccccEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHccccccccccc
Coil and Loop (DISEMBL)
mddsskeksdrgqstwklgeppdagcvSYILSEFgwnlqehesstsyfaadherselagnisssfpaetttdggglinpgrsadvstsnpsvsssssedptekstgsggkppeipskaRKKGqkrirqprfafmtksevdhledgyrwrkygqkavknspfprsyyrctnskctvkkrverssedptivittyegqhchhtvgfprgglinHEAAAFASHlthaippyyyhqgvqitqetpgikqqsheeelipvearehepnalpeppalppptdegllgdivppgmrnr
Flexible Loop (DISEMBL)
mddsskeksdrgqstwklgeppdAGCVSYILSEFGWNLQEHESSTSYFAADHERSELAGNISSSFPAETTTDGGGLINPgrsadvstsnpsvsssssedptekstgsggkppeipskarkkgqkrirqprfafmtksevdhledgyrwrkygqkavknspfprsyyrctnskctvkkrverssedptIVITTYEGQHCHHTVGFPRGGLINHEAAAFASHLTHAIPPYYYHQGVQITQETPGIKQQSHEEELIPVEAREHEPNALpeppalppptdegllgdivppgmrnr
Low Complexity Region (SEG)
MDDSSKEKSDRGQSTWKLGEPPDAGCVSYILSEFGWNLQEHESSTSYFAADHERSELAGNISSSFPAETTTDGGGLINPGRsadvstsnpsvsssssedpteksTGSGGKPPEIPSKARKKGQKRIRQPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSEDPTIVITTYEGQHCHHTVGFPRGGLINHEAAAFASHLTHAIPPYYYHQGVQITQETPGIKQQSHEEELIPVEAREHepnalpeppalpppTDEGLLGDIVPPGMRNR
Disordered region (IsUnstruct)
***********************AGCVSYILSEFGWNLQ********************************************************************************************AFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKR*******PTIVITTYEGQHCHHTVGFPRGGLINHEAAAFASHLTHAIPPYYYHQGVQIT******************************************************
Disordered Region (DISOPRED)
************************************************************************************************************************************FMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSEDPTIVITTYEGQHCH*******************************************************************************LLGDIVPPGM***
Disordered Region (DISEMBL)
***************WKLGEPPDAGCVSYILSEFGWNLQEHESSTSYFAADHERSELAGNISSSFPAETTTDGGGLINPGRS********************************************RQPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSEDPTIVITTYEGQHCHHTVGFPRGGLINHEAAAFASHLTHAIPPYYYHQGVQITQET**********ELIPVEAREHEPNALPEPPALPPPTDEGLLGDIVPPGMRNR
Disordered Region (DISPRO)
******************************************************************************************************************************RQPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSEDPTIVITTYEGQH**********************************************************************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDDSSKEKSDRGQSTWKLGEPPDAGCVSYILSEFGWNLQEHESSTSYFAADHERSELAGNISSSFPAETTTDGGGLINPGRSADVSTSNPSVSSSSSEDPTEKSTGSGGKPPEIPSKARKKGQKRIRQPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSEDPTIVITTYEGQHCHHTVGFPRGGLINHEAAAFASHLTHAIPPYYYHQGVQITQETPGIKQQSHEEELIPVEAREHEPNALPEPPALPPPTDEGLLGDIVPPGMRNR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	291	2.2.26 [Sep-21-2011]
Q9C983	287	Probable WRKY transcripti	yes	no	0.845	0.857	0.518	7e-64
O22900	337	Probable WRKY transcripti	no	no	0.285	0.246	0.795	5e-35
Q8VWJ2	318	Probable WRKY transcripti	no	no	0.285	0.261	0.783	3e-34
Q93WV4	282	Probable WRKY transcripti	no	no	0.642	0.663	0.453	2e-33
Q9FGZ4	399	Probable WRKY transcripti	no	no	0.285	0.208	0.722	1e-31
Q9FL26	326	Probable WRKY transcripti	no	no	0.243	0.217	0.830	1e-31
Q9SVB7	304	Probable WRKY transcripti	no	no	0.326	0.312	0.604	2e-28
Q93WY4	218	Probable WRKY transcripti	no	no	0.285	0.380	0.662	1e-27
Q93WV6	277	Probable WRKY transcripti	no	no	0.295	0.310	0.623	7e-27
Q8GY11	109	Probable WRKY transcripti	no	no	0.261	0.697	0.644	8e-24

>sp|Q9C983|WRK57_ARATH Probable WRKY transcription factor 57 OS=Arabidopsis thaliana GN=WRKY57 PE=2 SV=1

 Score =  244 bits (622), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 141/272 (51%), Positives = 166/272 (61%), Gaps = 26/272 (9%)

Query: 27  VSYILSEFGWNLQEHESSTSYFAADHERSELAGNISSSFPAETTTDGGGLINPGRSADVS 86
            S ILS+FGWNL            D + ++  G      P   T+          +   +
Sbjct: 33  TSNILSDFGWNLHHSSDHPHSLRFDSDLTQTTG----VKPTTVTSSCSSSAAVSVAVTST 88

Query: 87  TSNPSVSSSSSEDPTEKSTGSGGK--PPEIPSKARKKGQKRIRQPRFAFMTKSEVDHLED 144
            +NPS +SSSSEDP E ST S  K  PPE P K +KK QKRIRQPRFAFMTKS+VD+LED
Sbjct: 89  NNNPSATSSSSEDPAENSTASAEKTPPPETPVKEKKKAQKRIRQPRFAFMTKSDVDNLED 148

Query: 145 GYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSEDPTIVITTYEGQHCHHTVGF 204
           GYRWRKYGQKAVKNSPFPRSYYRCTNS+CTVKKRVERSS+DP+IVITTYEGQHCH T+GF
Sbjct: 149 GYRWRKYGQKAVKNSPFPRSYYRCTNSRCTVKKRVERSSDDPSIVITTYEGQHCHQTIGF 208

Query: 205 PRGGLIN-HEAAAFASHLTHAIPPYYYHQGVQITQETPGIKQQSHEEELIPVEAREHEPN 263
           PRGG++  H+  +F SH                 QE   +  Q H +   P         
Sbjct: 209 PRGGILTAHDPHSFTSHHHLP----PPLPNPYYYQE---LLHQLHRDNNAPSP------- 254

Query: 264 ALPEP-----PALPPPTDEGLLGDIVPPGMRN 290
            LP P     PA+  P++EGLLGDIVP  MRN
Sbjct: 255 RLPRPTTEDTPAVSTPSEEGLLGDIVPQTMRN 286

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.
Arabidopsis thaliana (taxid: 3702)

>sp|O22900|WRK23_ARATH Probable WRKY transcription factor 23 OS=Arabidopsis thaliana GN=WRKY23 PE=2 SV=1

 Score =  148 bits (373), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 66/83 (79%), Positives = 71/83 (85%)

Query: 117 KARKKGQKRIRQPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVK 176
           KA+K  QKR R+ R AFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCT + C VK
Sbjct: 148 KAKKNNQKRQREARVAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTTASCNVK 207

Query: 177 KRVERSSEDPTIVITTYEGQHCH 199
           KRVERS  DP+ V+TTYEGQH H
Sbjct: 208 KRVERSFRDPSTVVTTYEGQHTH 230

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8VWJ2|WRK28_ARATH Probable WRKY transcription factor 28 OS=Arabidopsis thaliana GN=WRKY28 PE=2 SV=1

 Score =  145 bits (366), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 65/83 (78%), Positives = 72/83 (86%)

Query: 117 KARKKGQKRIRQPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVK 176
           K +K   K+ R+PR +FMTKSEVDHLEDGYRWRKYGQKAVKNSP+PRSYYRCT  KC VK
Sbjct: 146 KTKKTEVKKQREPRVSFMTKSEVDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCNVK 205

Query: 177 KRVERSSEDPTIVITTYEGQHCH 199
           KRVERS +DPT+VITTYEGQH H
Sbjct: 206 KRVERSFQDPTVVITTYEGQHNH 228

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93WV4|WRK71_ARATH Probable WRKY transcription factor 71 OS=Arabidopsis thaliana GN=WRKY71 PE=2 SV=1

 Score =  143 bits (360), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 92/203 (45%), Positives = 115/203 (56%), Gaps = 16/203 (7%)

Query: 89  NPSVSSSSSEDPTEKSTGSGGKPPEIPSKARKKGQKRIRQPRFAFMTKSEVDHLEDGYRW 148
           N +  S   ED      G G    ++  + +KKG+K+ R+ R AFMTKSE+DHLEDGYRW
Sbjct: 82  NTNDKSDQMEDNEGDLHGVGESSKQLTKQGKKKGEKKEREVRVAFMTKSEIDHLEDGYRW 141

Query: 149 RKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSEDPTIVITTYEGQHCHHTVGFPRGG 208
           RKYGQKAVKNSP+PRSYYRCT  KC VKKRVERS +DP+IVITTYEG+H H      RG 
Sbjct: 142 RKYGQKAVKNSPYPRSYYRCTTQKCNVKKRVERSFQDPSIVITTYEGKHNHPIPSTLRGT 201

Query: 209 -----LINHEAAAFASHLTHAIPPYYYHQGVQITQETPGIKQQSHEEELIPVEAREH-EP 262
                L+ H     +  L H+ P   +HQ   + + +P   Q       +   + EH   
Sbjct: 202 VAAEHLLVHRGGGGS--LLHSFPR--HHQDFLMMKHSPANYQS------VGSLSYEHGHG 251

Query: 263 NALPEPPALPPPTDEGLLGDIVP 285
            +        P  D GLL DIVP
Sbjct: 252 TSSYNFNNNQPVVDYGLLQDIVP 274

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FGZ4|WRK48_ARATH Probable WRKY transcription factor 48 OS=Arabidopsis thaliana GN=WRKY48 PE=2 SV=1

 Score =  137 bits (344), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 60/83 (72%), Positives = 71/83 (85%)

Query: 127 RQPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSEDP 186
           R+ RFAF+TKS++D+L+DGYRWRKYGQKAVKNSP+PRSYYRCT   C VKKRVERSS+DP
Sbjct: 205 REARFAFLTKSDIDNLDDGYRWRKYGQKAVKNSPYPRSYYRCTTVGCGVKKRVERSSDDP 264

Query: 187 TIVITTYEGQHCHHTVGFPRGGL 209
           +IV+TTYEGQH H     PRG +
Sbjct: 265 SIVMTTYEGQHTHPFPMTPRGHI 287

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FL26|WRKY8_ARATH Probable WRKY transcription factor 8 OS=Arabidopsis thaliana GN=WRKY8 PE=2 SV=1

 Score =  136 bits (343), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 59/71 (83%), Positives = 64/71 (90%)

Query: 129 PRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSEDPTI 188
           PR +FMTK+EVDHLEDGYRWRKYGQKAVKNSP+PRSYYRCT  KC VKKRVERS +DPT+
Sbjct: 169 PRVSFMTKTEVDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCNVKKRVERSYQDPTV 228

Query: 189 VITTYEGQHCH 199
           VITTYE QH H
Sbjct: 229 VITTYESQHNH 239

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SVB7|WRK13_ARATH Probable WRKY transcription factor 13 OS=Arabidopsis thaliana GN=WRKY13 PE=2 SV=1

 Score =  126 bits (317), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 58/96 (60%), Positives = 72/96 (75%), Gaps = 1/96 (1%)

Query: 104 STGSGGKPPEIPSKARKKGQKRIRQPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPR 163
           +T S G    +  K + K ++++R+PRF F T SEVD L+DGYRWRKYGQK VKN+  PR
Sbjct: 185 NTASLGVVSSLKMK-KLKTRRKVREPRFCFKTLSEVDVLDDGYRWRKYGQKVVKNTQHPR 243

Query: 164 SYYRCTNSKCTVKKRVERSSEDPTIVITTYEGQHCH 199
           SYYRCT  KC VKKRVER ++DP +VITTYEG+H H
Sbjct: 244 SYYRCTQDKCRVKKRVERLADDPRMVITTYEGRHLH 279

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93WY4|WRK12_ARATH Probable WRKY transcription factor 12 OS=Arabidopsis thaliana GN=WRKY12 PE=2 SV=1

 Score =  123 bits (309), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 55/83 (66%), Positives = 68/83 (81%)

Query: 117 KARKKGQKRIRQPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVK 176
           K + K ++++R+PRF F TKS+VD L+DGY+WRKYGQK VKNS  PRSYYRCT++ C VK
Sbjct: 119 KNKVKIRRKLREPRFCFQTKSDVDVLDDGYKWRKYGQKVVKNSLHPRSYYRCTHNNCRVK 178

Query: 177 KRVERSSEDPTIVITTYEGQHCH 199
           KRVER SED  +VITTYEG+H H
Sbjct: 179 KRVERLSEDCRMVITTYEGRHNH 201

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93WV6|WRK68_ARATH Probable WRKY transcription factor 68 OS=Arabidopsis thaliana GN=WRKY68 PE=2 SV=1

 Score =  121 bits (303), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 58/93 (62%), Positives = 73/93 (78%), Gaps = 7/93 (7%)

Query: 118 ARKKGQKRIRQPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKK 177
           +RK+ +K++  P+ +F+T+SEV HL+DGY+WRKYGQK VK+SPFPR+YYRCT + C VKK
Sbjct: 95  SRKQTKKKV--PKVSFITRSEVLHLDDGYKWRKYGQKPVKDSPFPRNYYRCTTTWCDVKK 152

Query: 178 RVERSSEDPTIVITTYEGQHCHHTVGFPRGGLI 210
           RVERS  DP+ VITTYEGQH H     PR  LI
Sbjct: 153 RVERSFSDPSSVITTYEGQHTH-----PRPLLI 180

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GY11|WRK43_ARATH Probable WRKY transcription factor 43 OS=Arabidopsis thaliana GN=WRKY43 PE=1 SV=1

 Score =  110 bits (276), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 49/76 (64%), Positives = 62/76 (81%)

Query: 124 KRIRQPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSS 183
           K+++ PRF+F TKS+ D L+DGYRWRKYGQK+VKNS +PRSYYRCT   C VKK+V+R S
Sbjct: 11  KKMKNPRFSFRTKSDADILDDGYRWRKYGQKSVKNSLYPRSYYRCTQHMCNVKKQVQRLS 70

Query: 184 EDPTIVITTYEGQHCH 199
           ++ +IV TTYEG H H
Sbjct: 71  KETSIVETTYEGIHNH 86

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	291
225423515	305	PREDICTED: probable WRKY transcription f	0.934	0.891	0.612	4e-78
297738067	283	unnamed protein product [Vitis vinifera]	0.879	0.904	0.615	6e-76
351723213	293	transcription factor [Glycine max] gi|16	0.941	0.935	0.535	2e-70
351723051	297	WRKY32 protein [Glycine max] gi|15193418	0.865	0.848	0.575	4e-70
255542086	313	hypothetical protein RCOM_1621230 [Ricin	0.948	0.881	0.506	2e-67
388491388	278	unknown [Medicago truncatula]	0.649	0.679	0.665	6e-63
15222282	287	putative WRKY transcription factor 57 [A	0.845	0.857	0.518	4e-62
259121387	163	WRKY transcription factor 11 [(Populus t	0.556	0.993	0.748	1e-61
297841665	285	hypothetical protein ARALYDRAFT_476056 [	0.835	0.852	0.494	5e-60
312283269	281	unnamed protein product [Thellungiella h	0.883	0.914	0.493	4e-56

>gi|225423515|ref|XP_002274549.1| PREDICTED: probable WRKY transcription factor 57 [Vitis vinifera]

 Score =  297 bits (760), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 182/297 (61%), Positives = 206/297 (69%), Gaps = 25/297 (8%)

Query: 12  GQSTWKLGEPPDAGCV------SYILSEFGWNLQ----EHESSTSYFAADHER---SELA 58
           G S+W LG   D+         S ILSEFGWNLQ     H S       D ER   S+LA
Sbjct: 15  GDSSWTLGAESDSVYFFGSDKESSILSEFGWNLQPEEAHHRSLEPERFGDVERIESSDLA 74

Query: 59  GNI--SSSFPAETTTDGGGLINPGRSADVSTSNPSVSSSSSEDPTEKSTGSGG-KPPEIP 115
           G +  + S   E +     + +  ++ D STSNPSVSSSSSEDP EKSTGSGG KPPEIP
Sbjct: 75  GRLPLAESSGLECSAAAAQIGSAEKAGDASTSNPSVSSSSSEDPPEKSTGSGGGKPPEIP 134

Query: 116 SKARKKGQKRIRQPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTV 175
           SK RKKGQKRIRQPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTV
Sbjct: 135 SKGRKKGQKRIRQPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTV 194

Query: 176 KKRVERSSEDPTIVITTYEGQHCHHTVGFPRGGLINHEAAAFASHLTHAIPPYYYHQGVQ 235
           KKRVERSSEDP+IVITTYEGQHCHHTVGFPRGG+I+ E   F   +T  +  ++Y+  + 
Sbjct: 195 KKRVERSSEDPSIVITTYEGQHCHHTVGFPRGGVISQE-VTFDGRMTPPLTSHFYYPDMS 253

Query: 236 ITQET--PGIKQQSHEEELIPVEAREHEPNALPEPPALPPPTDEGLLGDIVPPGMRN 290
             +E    G   QSH+   +P +ARE    A P P     PTDEGLLGD+VPPGMRN
Sbjct: 254 FHREVSHSGSMAQSHQ---VPAQAREARALAEPSPQL---PTDEGLLGDMVPPGMRN 304

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297738067|emb|CBI27268.3| unnamed protein product [Vitis vinifera]

 Score =  290 bits (741), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 179/291 (61%), Positives = 202/291 (69%), Gaps = 35/291 (12%)

Query: 12  GQSTWKLGEPPDAGCV------SYILSEFGWNLQEHESSTSYFAADHERS---ELAGNIS 62
           G S+W LG   D+         S ILSEFGWNLQ  E+        H RS   E  G++ 
Sbjct: 15  GDSSWTLGAESDSVYFFGSDKESSILSEFGWNLQPEEA--------HHRSLEPERFGDVE 66

Query: 63  SSFPAETTTDGGGLINPGRSADVSTSNPSVSSSSSEDPTEKSTGSGG-KPPEIPSKARKK 121
                ET      + +  ++ D STSNPSVSSSSSEDP EKSTGSGG KPPEIPSK RKK
Sbjct: 67  R---IETQ-----IGSAEKAGDASTSNPSVSSSSSEDPPEKSTGSGGGKPPEIPSKGRKK 118

Query: 122 GQKRIRQPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVER 181
           GQKRIRQPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVER
Sbjct: 119 GQKRIRQPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVER 178

Query: 182 SSEDPTIVITTYEGQHCHHTVGFPRGGLINHEAAAFASHLTHAIPPYYYHQGVQITQET- 240
           SSEDP+IVITTYEGQHCHHTVGFPRGG+I+ E   F   +T  +  ++Y+  +   +E  
Sbjct: 179 SSEDPSIVITTYEGQHCHHTVGFPRGGVISQE-VTFDGRMTPPLTSHFYYPDMSFHREVS 237

Query: 241 -PGIKQQSHEEELIPVEAREHEPNALPEPPALPPPTDEGLLGDIVPPGMRN 290
             G   QSH+   +P +ARE    A P P     PTDEGLLGD+VPPGMRN
Sbjct: 238 HSGSMAQSHQ---VPAQAREARALAEPSPQL---PTDEGLLGDMVPPGMRN 282

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351723213|ref|NP_001237527.1| transcription factor [Glycine max] gi|166203225|gb|ABY84653.1| transcription factor [Glycine max]

 Score =  271 bits (693), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 166/310 (53%), Positives = 194/310 (62%), Gaps = 36/310 (11%)

Query: 1   MDDSSKEKSD----RGQSTWKLGEPPDAGCVSY-------ILSEFGWNLQEHESSTSYFA 49
           M+D  +  SD     G ++W L      G   +       IL EFGWNL+  +       
Sbjct: 1   MEDKDRAASDPAEFAGDTSWTLATDDSDGAYLFPGDRERSILREFGWNLEPDQP------ 54

Query: 50  ADHERSELAGNISSSFPAETTTDGGGLINPGRSADVSTSNPSVSSSSSEDPTEKSTGSGG 109
                + +  +  S  P +++  G   I P  +    ++N SVSSSSSEDP EKST S  
Sbjct: 55  -----NRIGTDDGSWRPVQSSLTGS--IEPAAAMSSRSNNQSVSSSSSEDPPEKSTVSDE 107

Query: 110 KPPEIPSKARKKGQKRIRQPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCT 169
           KPPEIPSK +KK  KRIRQPRFAFMTK+EVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCT
Sbjct: 108 KPPEIPSKGKKKEHKRIRQPRFAFMTKTEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCT 167

Query: 170 NSKCTVKKRVERSSEDPTIVITTYEGQHCHHTVGFPRGGLINHEAAAFASHLTHAIPPYY 229
           NSKCTVKKRVERSSEDPTIVITTYEGQHCHHTVGFPRGG+I+HE AAFAS L   +  +Y
Sbjct: 168 NSKCTVKKRVERSSEDPTIVITTYEGQHCHHTVGFPRGGIISHE-AAFASQLAPTMSQFY 226

Query: 230 YHQGVQITQETPGIKQQSHEEELIPVEAREHEPNALPEPPALP--------PPTDEGLLG 281
           Y   +Q+ ++       S      P +A +     L     LP        P TDEGLLG
Sbjct: 227 YP--IQLPRDN-NNNNNSFSSISQPCQAYDDAEGGLSAMMPLPADVSSQSQPSTDEGLLG 283

Query: 282 DIVPPGMRNR 291
           DIVPPGMR R
Sbjct: 284 DIVPPGMRIR 293

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351723051|ref|NP_001237777.1| WRKY32 protein [Glycine max] gi|151934189|gb|ABS18432.1| WRKY32 [Glycine max]

 Score =  271 bits (692), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 160/278 (57%), Positives = 181/278 (65%), Gaps = 26/278 (9%)

Query: 36  WNLQEHESSTSY-FAADHERS---ELAGNISSSFPAETTTDGGGLINPGRSADVSTSNPS 91
           W L   +S  +Y F  D ERS   E   N+    P    TD G L  P +S+   +  P 
Sbjct: 24  WTLAADDSDGAYLFPGDRERSILREFVWNLEPDQPNRIGTDDG-LWKPVQSSLTDSIEPV 82

Query: 92  VSS-----------SSSEDPTEKSTGSGGKPPEIPSKARKKGQKRIRQPRFAFMTKSEVD 140
            ++           SSSEDP EKST S  KPPEIPSK + KGQKRIRQPRFAFMTKSEVD
Sbjct: 83  AAAPSRSNNQSISSSSSEDPPEKSTVSDDKPPEIPSKGKNKGQKRIRQPRFAFMTKSEVD 142

Query: 141 HLEDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSEDPTIVITTYEGQHCHH 200
           HLEDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSEDPTIVITTYEGQHCHH
Sbjct: 143 HLEDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSEDPTIVITTYEGQHCHH 202

Query: 201 TVGFPRGGLINHEAAAFASHLTHAIPPYYYHQGVQI-TQETPGIKQQSHEEELIPVEAR- 258
           TVGFPRGG+  HE AAFA  L   +  +YY   +Q+ ++E       +      P +A+ 
Sbjct: 203 TVGFPRGGIFFHE-AAFAGQLAPTMSQFYYP--IQLPSRENDDNNNNTLSTISQPCQAQD 259

Query: 259 ---EHEPNALPEPPALP--PPTDEGLLGDIVPPGMRNR 291
              E     +P   + P  PPTDEGLLGDIVPPGMR R
Sbjct: 260 ETGEGSSVMMPADGSSPSQPPTDEGLLGDIVPPGMRIR 297

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255542086|ref|XP_002512107.1| hypothetical protein RCOM_1621230 [Ricinus communis] gi|223549287|gb|EEF50776.1| hypothetical protein RCOM_1621230 [Ricinus communis]

 Score =  261 bits (667), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 166/328 (50%), Positives = 189/328 (57%), Gaps = 52/328 (15%)

Query: 1   MDDSSKEKSD-RGQSTWKLGEPPDAGCVSY---------ILSEFGWNLQEHESSTSYF-- 48
           MDD      D    STW LG  PD+  VSY         ILSEFGWNL  H S       
Sbjct: 1   MDDKDNTGDDFVTDSTWTLG--PDSDGVSYFFATERESSILSEFGWNL--HTSEPERLDE 56

Query: 49  ---AADHERSELAGNISSSFPAETTTDG--------GGLINPGRSADVSTSNPSVS-SSS 96
                    ++LAGN+     A                L+   +S  V+ +   +     
Sbjct: 57  LDPIQSQNTADLAGNLRLHLRAAAAAACYKDRYLPVAILVLVRQSLAVAVAMLRLRIHQY 116

Query: 97  SEDPTEKSTGSGGKPPEIPS-------------KARKKGQKRIRQPRFAFMTKSEVDHLE 143
            + P      S    P +PS             K +KKGQKRIRQPRFAFMTKSEVDHLE
Sbjct: 117 RQAPVRIRQIS----PRVPSGNHLRYREIFCRSKGKKKGQKRIRQPRFAFMTKSEVDHLE 172

Query: 144 DGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSEDPTIVITTYEGQHCHHTVG 203
           DGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSEDPTIVITTYEGQHCHHTVG
Sbjct: 173 DGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSEDPTIVITTYEGQHCHHTVG 232

Query: 204 FPRGGLINHEAAAFASHLTHAIPPYYYHQGVQITQETPGIKQQSHEEELIPVEAREHEPN 263
           FPRGG+I+HE   F +H+T  +  +YY  G+Q  +E P    QS +     + A+  EP 
Sbjct: 233 FPRGGIISHE-VTFVNHMTPPVSQFYY-TGIQTPRENPPTITQSQQT----LPAQTGEPG 286

Query: 264 ALPEPPALPPPTDEGLLGDIVPPGMRNR 291
            L EP     PTDEGLLGDIVPPGMRNR
Sbjct: 287 TLREPNRR-GPTDEGLLGDIVPPGMRNR 313

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388491388|gb|AFK33760.1| unknown [Medicago truncatula]

 Score =  246 bits (629), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 133/200 (66%), Positives = 147/200 (73%), Gaps = 11/200 (5%)

Query: 98  EDPTEKSTGSGGKPPEIPSKARKKGQKRIRQPRFAFMTKSEVDHLEDGYRWRKYGQKAVK 157
           ED  EKST S  KPPE PSK++KKG+KRIRQPRFAFMTKSEVDHLEDGYRWRKYGQKAVK
Sbjct: 79  EDLPEKSTVSDEKPPETPSKSKKKGEKRIRQPRFAFMTKSEVDHLEDGYRWRKYGQKAVK 138

Query: 158 NSPFPRSYYRCTNSKCTVKKRVERSSEDPTIVITTYEGQHCHHTVGFPRGGLINHEAAAF 217
           NSPFPRSYYRCTNSKCTVKKRVERS EDPTIVITTYEGQHCHHTVGFPR G+I+HE ++F
Sbjct: 139 NSPFPRSYYRCTNSKCTVKKRVERSHEDPTIVITTYEGQHCHHTVGFPRTGMISHE-SSF 197

Query: 218 ASHLTHAIPPYYYHQGVQITQE----TPGIKQ--QSHEEELIPVEAREHEPNALPEPPAL 271
            S     +P +YY   VQ+  E    T  + Q  Q+H+       +      A   PP  
Sbjct: 198 TSQFAPTMPQFYY--PVQLPTELNTCTTTVFQLCQTHDHHEFTGGSSSATMLADASPPL- 254

Query: 272 PPPTDEGLLGDIVPPGMRNR 291
               DEGLLGDIVP GMRNR
Sbjct: 255 -DLADEGLLGDIVPRGMRNR 273

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15222282|ref|NP_177090.1| putative WRKY transcription factor 57 [Arabidopsis thaliana] gi|42572043|ref|NP_974112.1| putative WRKY transcription factor 57 [Arabidopsis thaliana] gi|29839613|sp|Q9C983.1|WRK57_ARATH RecName: Full=Probable WRKY transcription factor 57; AltName: Full=WRKY DNA-binding protein 57 gi|12325089|gb|AAG52498.1|AC018364_16 unknown protein; 38999-40790 [Arabidopsis thaliana] gi|18252125|gb|AAL61859.1| WRKY transcription factor 57 [Arabidopsis thaliana] gi|109946469|gb|ABG48413.1| At1g69310 [Arabidopsis thaliana] gi|225898070|dbj|BAH30367.1| hypothetical protein [Arabidopsis thaliana] gi|332196787|gb|AEE34908.1| putative WRKY transcription factor 57 [Arabidopsis thaliana] gi|332196788|gb|AEE34909.1| putative WRKY transcription factor 57 [Arabidopsis thaliana]

 Score =  244 bits (622), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 141/272 (51%), Positives = 166/272 (61%), Gaps = 26/272 (9%)

Query: 27  VSYILSEFGWNLQEHESSTSYFAADHERSELAGNISSSFPAETTTDGGGLINPGRSADVS 86
            S ILS+FGWNL            D + ++  G      P   T+          +   +
Sbjct: 33  TSNILSDFGWNLHHSSDHPHSLRFDSDLTQTTG----VKPTTVTSSCSSSAAVSVAVTST 88

Query: 87  TSNPSVSSSSSEDPTEKSTGSGGK--PPEIPSKARKKGQKRIRQPRFAFMTKSEVDHLED 144
            +NPS +SSSSEDP E ST S  K  PPE P K +KK QKRIRQPRFAFMTKS+VD+LED
Sbjct: 89  NNNPSATSSSSEDPAENSTASAEKTPPPETPVKEKKKAQKRIRQPRFAFMTKSDVDNLED 148

Query: 145 GYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSEDPTIVITTYEGQHCHHTVGF 204
           GYRWRKYGQKAVKNSPFPRSYYRCTNS+CTVKKRVERSS+DP+IVITTYEGQHCH T+GF
Sbjct: 149 GYRWRKYGQKAVKNSPFPRSYYRCTNSRCTVKKRVERSSDDPSIVITTYEGQHCHQTIGF 208

Query: 205 PRGGLIN-HEAAAFASHLTHAIPPYYYHQGVQITQETPGIKQQSHEEELIPVEAREHEPN 263
           PRGG++  H+  +F SH                 QE   +  Q H +   P         
Sbjct: 209 PRGGILTAHDPHSFTSHHHLP----PPLPNPYYYQE---LLHQLHRDNNAPSP------- 254

Query: 264 ALPEP-----PALPPPTDEGLLGDIVPPGMRN 290
            LP P     PA+  P++EGLLGDIVP  MRN
Sbjct: 255 RLPRPTTEDTPAVSTPSEEGLLGDIVPQTMRN 286

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|259121387|gb|ACV92013.1| WRKY transcription factor 11 [(Populus tomentosa x P. bolleana) x P. tomentosa]

 Score =  242 bits (618), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 128/171 (74%), Positives = 138/171 (80%), Gaps = 9/171 (5%)

Query: 120 KKGQKRIRQPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRV 179
           KKGQKRIRQPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRV
Sbjct: 1   KKGQKRIRQPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRV 60

Query: 180 ERSSEDPTIVITTYEGQHCHHTVGFPRGGLINHEAAAFASHLTHAIPPYYYHQGVQITQE 239
           ERSSEDP IVITTYEGQHCHHTVGFPRGG+I+HE A FASH+T     +YY  G+Q+ +E
Sbjct: 61  ERSSEDPAIVITTYEGQHCHHTVGFPRGGIISHE-ATFASHMTPPTSQFYY-PGMQLPRE 118

Query: 240 TPGIKQQSHEEELIPVEAREHEPNALP-EPPALPPPTDEGLLGDIVPPGMR 289
            P       +   +PV ARE   N +P   P L  PTDEGLLGDIVPPGMR
Sbjct: 119 NP--PSTVVQSRPLPVGAREC--NTVPTRTPQL--PTDEGLLGDIVPPGMR 163

Source: (Populus tomentosa x P. bolleana) x P. tomentosa

Species: (Populus tomentosa x P. bolleana) x P. tomentosa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297841665|ref|XP_002888714.1| hypothetical protein ARALYDRAFT_476056 [Arabidopsis lyrata subsp. lyrata] gi|297334555|gb|EFH64973.1| hypothetical protein ARALYDRAFT_476056 [Arabidopsis lyrata subsp. lyrata]

 Score =  237 bits (604), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 136/275 (49%), Positives = 167/275 (60%), Gaps = 32/275 (11%)

Query: 27  VSYILSEFGWNLQEHESSTSYFAADHERSELAGNISSSFPAETTTDGGGLINPGRSADVS 86
            S ILS+FGWNL            D + +   G      P   T+          +   +
Sbjct: 31  TSNILSDFGWNLHHSSDHQHSLRFDSDLTPTTG----VKPTTVTSSCSSSAAVSVAVTSN 86

Query: 87  TSNPSVSSSSSEDPTEKSTGSGGK--PPEIPSKARKKGQKRIRQPRFAFMTKSEVDHLED 144
            +NPS +SSSSED  E ST S  K  PPE P K +KK QKRIRQPRFAFMTKS+VD+LED
Sbjct: 87  NNNPSATSSSSEDLAENSTASAEKTPPPETPVKEKKKAQKRIRQPRFAFMTKSDVDNLED 146

Query: 145 GYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSEDPTIVITTYEGQHCHHTVGF 204
           GYRWRKYGQKAVKNSPFPRSYYRCTNS+CTVKKRVERSSEDP+IVITTYEGQHCH T+GF
Sbjct: 147 GYRWRKYGQKAVKNSPFPRSYYRCTNSRCTVKKRVERSSEDPSIVITTYEGQHCHQTIGF 206

Query: 205 PRGGLI-NHEAAAFASHLTHAIPPYYYHQGVQITQE--------TPGIKQQSHEEELIPV 255
           PRGG++ +H+  +F SH     P    +   ++  +        +P + + + E+ L   
Sbjct: 207 PRGGILTSHDPHSFTSHHHLPPPLPNPYYYQELLHQLHRDNNAPSPRLPKSTTEDAL--- 263

Query: 256 EAREHEPNALPEPPALPPPTDEGLLGDIVPPGMRN 290
                         A+  P++EGLLGDIVP  MRN
Sbjct: 264 --------------AVSNPSEEGLLGDIVPQTMRN 284

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|312283269|dbj|BAJ34500.1| unnamed protein product [Thellungiella halophila]

 Score =  224 bits (571), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 144/292 (49%), Positives = 178/292 (60%), Gaps = 35/292 (11%)

Query: 12  GQSTWKLGEPPDAGC-----VSYILSEFGWNLQEHESSTSYFAADHERSELAGNISSSFP 66
            +S W+    PD+        S ILS+F WNL  H SS+ +   D   +  AG + S   
Sbjct: 11  NESAWRQLTAPDSDDFFDRDTSNILSDFSWNL--HHSSSDHHRLDSGVTPTAG-VRSPVT 67

Query: 67  AETTTDGGGLINPGRSADVSTSN-PSVSSSSSEDPTEKSTGSGGKPPEIPSKARKKGQKR 125
               +      +     +VSTSN PS +SSSSEDP E ST    K P+ P K +KK QKR
Sbjct: 68  TNLHSSTSSCSSSLAVIEVSTSNNPSATSSSSEDPAENSTA--AKTPDTPKKEKKKAQKR 125

Query: 126 IRQPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSED 185
           IRQPRFAFMTKS+VD+LEDGYRWRKYGQKAVKNSPFPRSYYRCTNS+CTVKKRVERSSED
Sbjct: 126 IRQPRFAFMTKSDVDNLEDGYRWRKYGQKAVKNSPFPRSYYRCTNSRCTVKKRVERSSED 185

Query: 186 PTIVITTYEGQHCHHTVGFPRGGLIN-HEAAAFASHLTHAIPPYYYHQGVQITQETPGIK 244
           P++VITTYEGQHCH  +GFPRGG++  H+   F S                     P + 
Sbjct: 186 PSVVITTYEGQHCHQNIGFPRGGILTAHDPRNFTS----------------HHHLPPPLP 229

Query: 245 QQSHEEELIPVEAREHEPNA-LPEP-----PALPPPTDEGLLGDIVPPGMRN 290
              + +EL+    R++  +  LP+P     PA+  P++EGLLGDIV   MRN
Sbjct: 230 NPYYYQELLHQLHRDNTSSTRLPQPTTGDAPAVSNPSEEGLLGDIV-QTMRN 280

Source: Thellungiella halophila

Species: Eutrema halophilum

Genus: Eutrema

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	291
TAIR|locus:2007081	287	WRKY57 "AT1G69310" [Arabidopsi	0.848	0.860	0.479	1.1e-55
TAIR|locus:2157829	399	WRKY48 "WRKY DNA-binding prote	0.408	0.298	0.593	1.8e-41
TAIR|locus:2019382	282	WRKY71 "WRKY DNA-binding prote	0.584	0.602	0.473	9.2e-36
TAIR|locus:2141872	318	WRKY28 "WRKY DNA-binding prote	0.419	0.383	0.595	9.5e-34
TAIR|locus:2065124	337	WRKY23 "WRKY DNA-binding prote	0.285	0.246	0.795	1.5e-33
TAIR|locus:2170403	326	WRKY8 "WRKY DNA-binding protei	0.281	0.251	0.759	1.8e-32
TAIR|locus:2096019	277	WRKY68 [Arabidopsis thaliana (	0.570	0.599	0.412	3.1e-28
TAIR|locus:2122496	304	WRKY13 "WRKY DNA-binding prote	0.285	0.273	0.666	8.2e-28
TAIR|locus:505006317	218	WRKY12 "WRKY DNA-binding prote	0.285	0.380	0.662	5.7e-27
TAIR|locus:2078703	147	WRKY45 "WRKY DNA-binding prote	0.285	0.564	0.614	8.4e-26

TAIR|locus:2007081 WRKY57 "AT1G69310" [Arabidopsis thaliana (taxid:3702)]

 Score = 574 (207.1 bits), Expect = 1.1e-55, P = 1.1e-55
 Identities = 129/269 (47%), Positives = 151/269 (56%)

Query:    28 SYILSEFGWNLQEHESSTSYFAADHERSELAGNISSSFPAETTTDGGGLINPGRXXXXXX 87
             S ILS+FGWNL            D + ++  G +    P   T+                
Sbjct:    34 SNILSDFGWNLHHSSDHPHSLRFDSDLTQTTG-VK---PTTVTSSCSSSAAVSVAVTSTN 89

Query:    88 XXXXXXXXXXXXXXXXXTGSGGK--PPEIPSKARKKGQKRIRQPRFAFMTKSEVDHLEDG 145
                              T S  K  PPE P K +KK QKRIRQPRFAFMTKS+VD+LEDG
Sbjct:    90 NNPSATSSSSEDPAENSTASAEKTPPPETPVKEKKKAQKRIRQPRFAFMTKSDVDNLEDG 149

Query:   146 YRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSEDPTIVITTYEGQHCHHTVGFP 205
             YRWRKYGQKAVKNSPFPRSYYRCTNS+CTVKKRVERSS+DP+IVITTYEGQHCH T+GFP
Sbjct:   150 YRWRKYGQKAVKNSPFPRSYYRCTNSRCTVKKRVERSSDDPSIVITTYEGQHCHQTIGFP 209

Query:   206 RGGLIN-HEAAAFASH--LTHAIP-PYYYHQGVQITQETPGIKQQSHEEELIPVEAREHX 261
             RGG++  H+  +F SH  L   +P PYYY       QE   +  Q H +   P       
Sbjct:   210 RGGILTAHDPHSFTSHHHLPPPLPNPYYY-------QE---LLHQLHRDNNAPSPRLPRP 259

Query:   262 XXXXXXXXXXXXXTDEGLLGDIVPPGMRN 290
                          ++EGLLGDIVP  MRN
Sbjct:   260 TTEDTPAVSTP--SEEGLLGDIVPQTMRN 286

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0006970 "response to osmotic stress" evidence=IMP

GO:0009414 "response to water deprivation" evidence=IMP

GO:0009651 "response to salt stress" evidence=IMP

TAIR|locus:2157829 WRKY48 "WRKY DNA-binding protein 48" [Arabidopsis thaliana (taxid:3702)]

 Score = 376 (137.4 bits), Expect = 1.8e-41, Sum P(3) = 1.8e-41
 Identities = 76/128 (59%), Positives = 94/128 (73%)

Query:   109 GKPPEIPSKARKKGQKRIRQPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRC 168
             G  P++  KA+KK QK+ R+ RFAF+TKS++D+L+DGYRWRKYGQKAVKNSP+PRSYYRC
Sbjct:   189 GTKPQL--KAKKKNQKKAREARFAFLTKSDIDNLDDGYRWRKYGQKAVKNSPYPRSYYRC 246

Query:   169 TNSKCTVKKRVERSSEDPTIVITTYEGQHCHHTVGFPRG--GLINH----EAAAFASHLT 222
             T   C VKKRVERSS+DP+IV+TTYEGQH H     PRG  G++        A  AS  +
Sbjct:   247 TTVGCGVKKRVERSSDDPSIVMTTYEGQHTHPFPMTPRGHIGMLTSPILDHGATTASSSS 306

Query:   223 HAIP-PYY 229
              +IP P Y
Sbjct:   307 FSIPQPRY 314

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0003677 "DNA binding" evidence=IDA

GO:0009617 "response to bacterium" evidence=IEP

GO:0042742 "defense response to bacterium" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0006865 "amino acid transport" evidence=RCA

GO:0015824 "proline transport" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0052542 "defense response by callose deposition" evidence=RCA

TAIR|locus:2019382 WRKY71 "WRKY DNA-binding protein 71" [Arabidopsis thaliana (taxid:3702)]

 Score = 386 (140.9 bits), Expect = 9.2e-36, P = 9.2e-36
 Identities = 88/186 (47%), Positives = 108/186 (58%)

Query:   106 GSGGKPPEIPSKARKKGQKRIRQPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSY 165
             G G    ++  + +KKG+K+ R+ R AFMTKSE+DHLEDGYRWRKYGQKAVKNSP+PRSY
Sbjct:    99 GVGESSKQLTKQGKKKGEKKEREVRVAFMTKSEIDHLEDGYRWRKYGQKAVKNSPYPRSY 158

Query:   166 YRCTNSKCTVKKRVERSSEDPTIVITTYEGQHCHHTVGFPRGG-----LINHEAAAFASH 220
             YRCT  KC VKKRVERS +DP+IVITTYEG+H H      RG      L+ H        
Sbjct:   159 YRCTTQKCNVKKRVERSFQDPSIVITTYEGKHNHPIPSTLRGTVAAEHLLVHRGGG--GS 216

Query:   221 LTHAIPPYYYHQGVQITQETPGIKQQSHEEELIPVEAREHXXXXXXXXXXXXX-XTDEGL 279
             L H+ P +  HQ   + + +P    QS     +   + EH                D GL
Sbjct:   217 LLHSFPRH--HQDFLMMKHSPA-NYQS-----VGSLSYEHGHGTSSYNFNNNQPVVDYGL 268

Query:   280 LGDIVP 285
             L DIVP
Sbjct:   269 LQDIVP 274

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

TAIR|locus:2141872 WRKY28 "WRKY DNA-binding protein 28" [Arabidopsis thaliana (taxid:3702)]

 Score = 367 (134.2 bits), Expect = 9.5e-34, P = 9.5e-34
 Identities = 75/126 (59%), Positives = 87/126 (69%)

Query:   117 KARKKGQKRIRQPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVK 176
             K +K   K+ R+PR +FMTKSEVDHLEDGYRWRKYGQKAVKNSP+PRSYYRCT  KC VK
Sbjct:   146 KTKKTEVKKQREPRVSFMTKSEVDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCNVK 205

Query:   177 KRVERSSEDPTIVITTYEGQHCHHTVGFPRGGLINHEAAAFASHLTHAIPPYYYHQGVQI 236
             KRVERS +DPT+VITTYEGQH H      RG   +  AA F++ L    P  + H   + 
Sbjct:   206 KRVERSFQDPTVVITTYEGQHNHPIPTNLRGS--SAAAAMFSADLM--TPRSFAHDMFRT 261

Query:   237 TQETPG 242
                T G
Sbjct:   262 AAYTNG 267

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IDA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA;IDA

GO:0006865 "amino acid transport" evidence=RCA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

TAIR|locus:2065124 WRKY23 "WRKY DNA-binding protein 23" [Arabidopsis thaliana (taxid:3702)]

 Score = 365 (133.5 bits), Expect = 1.5e-33, P = 1.5e-33
 Identities = 66/83 (79%), Positives = 71/83 (85%)

Query:   117 KARKKGQKRIRQPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVK 176
             KA+K  QKR R+ R AFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCT + C VK
Sbjct:   148 KAKKNNQKRQREARVAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTTASCNVK 207

Query:   177 KRVERSSEDPTIVITTYEGQHCH 199
             KRVERS  DP+ V+TTYEGQH H
Sbjct:   208 KRVERSFRDPSTVVTTYEGQHTH 230

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009624 "response to nematode" evidence=IEP

GO:0009733 "response to auxin stimulus" evidence=IEP

TAIR|locus:2170403 WRKY8 "WRKY DNA-binding protein 8" [Arabidopsis thaliana (taxid:3702)]

 Score = 355 (130.0 bits), Expect = 1.8e-32, P = 1.8e-32
 Identities = 63/83 (75%), Positives = 73/83 (87%)

Query:   117 KARKKGQKRIRQPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVK 176
             K +KK +K+ ++PR +FMTK+EVDHLEDGYRWRKYGQKAVKNSP+PRSYYRCT  KC VK
Sbjct:   158 KTKKKEEKK-KEPRVSFMTKTEVDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCNVK 216

Query:   177 KRVERSSEDPTIVITTYEGQHCH 199
             KRVERS +DPT+VITTYE QH H
Sbjct:   217 KRVERSYQDPTVVITTYESQHNH 239

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0042742 "defense response to bacterium" evidence=IMP

GO:0050832 "defense response to fungus" evidence=IMP

GO:0070301 "cellular response to hydrogen peroxide" evidence=IEP

TAIR|locus:2096019 WRKY68 [Arabidopsis thaliana (taxid:3702)]

 Score = 315 (115.9 bits), Expect = 3.1e-28, P = 3.1e-28
 Identities = 73/177 (41%), Positives = 103/177 (58%)

Query:   118 ARKKGQKRIRQPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKK 177
             +RK+ +K++  P+ +F+T+SEV HL+DGY+WRKYGQK VK+SPFPR+YYRCT + C VKK
Sbjct:    95 SRKQTKKKV--PKVSFITRSEVLHLDDGYKWRKYGQKPVKDSPFPRNYYRCTTTWCDVKK 152

Query:   178 RVERSSEDPTIVITTYEGQHCHHT--VGFPRGGLINHEAAAFASHL-THAIPPYY--YHQ 232
             RVERS  DP+ VITTYEGQH H    +  P+ G      +A  +H+    +PP    Y+ 
Sbjct:   153 RVERSFSDPSSVITTYEGQHTHPRPLLIMPKEGSSPSNGSASRAHIGLPTLPPQLLDYNN 212

Query:   233 GVQITQETPGIKQQSHEEELIPVEARE-HXXXXXXXXXXXXXX---TDEGLLGDIVP 285
               Q    + G +  + +E+ I  +  + H                  D GLL D+VP
Sbjct:   213 QQQQAPSSFGTEYINRQEKGINHDDDDDHVVKKSRTRDLLDGAGLVKDHGLLQDVVP 269

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

TAIR|locus:2122496 WRKY13 "WRKY DNA-binding protein 13" [Arabidopsis thaliana (taxid:3702)]

 Score = 311 (114.5 bits), Expect = 8.2e-28, P = 8.2e-28
 Identities = 56/84 (66%), Positives = 68/84 (80%)

Query:   117 KARK-KGQKRIRQPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTV 175
             K +K K ++++R+PRF F T SEVD L+DGYRWRKYGQK VKN+  PRSYYRCT  KC V
Sbjct:   196 KMKKLKTRRKVREPRFCFKTLSEVDVLDDGYRWRKYGQKVVKNTQHPRSYYRCTQDKCRV 255

Query:   176 KKRVERSSEDPTIVITTYEGQHCH 199
             KKRVER ++DP +VITTYEG+H H
Sbjct:   256 KKRVERLADDPRMVITTYEGRHLH 279

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

TAIR|locus:505006317 WRKY12 "WRKY DNA-binding protein 12" [Arabidopsis thaliana (taxid:3702)]

 Score = 303 (111.7 bits), Expect = 5.7e-27, P = 5.7e-27
 Identities = 55/83 (66%), Positives = 68/83 (81%)

Query:   117 KARKKGQKRIRQPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVK 176
             K + K ++++R+PRF F TKS+VD L+DGY+WRKYGQK VKNS  PRSYYRCT++ C VK
Sbjct:   119 KNKVKIRRKLREPRFCFQTKSDVDVLDDGYKWRKYGQKVVKNSLHPRSYYRCTHNNCRVK 178

Query:   177 KRVERSSEDPTIVITTYEGQHCH 199
             KRVER SED  +VITTYEG+H H
Sbjct:   179 KRVERLSEDCRMVITTYEGRHNH 201

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009718 "anthocyanin-containing compound biosynthetic process" evidence=RCA

TAIR|locus:2078703 WRKY45 "WRKY DNA-binding protein 45" [Arabidopsis thaliana (taxid:3702)]

 Score = 292 (107.8 bits), Expect = 8.4e-26, P = 8.4e-26
 Identities = 51/83 (61%), Positives = 65/83 (78%)

Query:   117 KARKKGQKRIRQPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVK 176
             K R K +K+ R+ R+AF T+S+VD L+DGYRWRKYGQKAVKN+PFPRSYY+CT   C VK
Sbjct:    39 KPRSKKKKKEREARYAFQTRSQVDILDDGYRWRKYGQKAVKNNPFPRSYYKCTEEGCRVK 98

Query:   177 KRVERSSEDPTIVITTYEGQHCH 199
             K+V+R   D  +V+TTY+G H H
Sbjct:    99 KQVQRQWGDEGVVVTTYQGVHTH 121

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9C983	WRK57_ARATH	No assigned EC number	0.5183	0.8453	0.8571	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00030063001 SubName- Full=Chromosome chr1 scaffold_5, whole genome shotgun sequence; (305 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	291
smart00774	59	smart00774, WRKY, DNA binding domain	1e-35
pfam03106	60	pfam03106, WRKY, WRKY DNA -binding domain	1e-34

>gnl|CDD|214815 smart00774, WRKY, DNA binding domain

 Score =  121 bits (307), Expect = 1e-35
 Identities = 37/59 (62%), Positives = 49/59 (83%), Gaps = 1/59 (1%)

Query: 142 LEDGYRWRKYGQKAVKNSPFPRSYYRCTNSK-CTVKKRVERSSEDPTIVITTYEGQHCH 199
           L+DGY+WRKYGQK +K SP+PRSYYRCT ++ C  KK+V+RS +DP++V  TYEG+H H
Sbjct: 1   LDDGYQWRKYGQKVIKGSPYPRSYYRCTYTQGCPAKKQVQRSDDDPSVVEVTYEGEHTH 59

The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants, including pathogen defense, senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core is essential for function and WRKY binding. Length = 59

>gnl|CDD|145969 pfam03106, WRKY, WRKY DNA -binding domain

 Score =  119 bits (300), Expect = 1e-34
 Identities = 43/59 (72%), Positives = 48/59 (81%)

Query: 142 LEDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSEDPTIVITTYEGQHCHH 200
           L+DGY WRKYGQK VK SPFPRSYYRCT+  C VKK+VERSS+DP IV  TYEG+H H 
Sbjct: 1   LDDGYNWRKYGQKPVKGSPFPRSYYRCTSPGCPVKKQVERSSDDPQIVEITYEGEHNHP 59

Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	291
PF03106	60	WRKY: WRKY DNA -binding domain; InterPro: IPR00365	99.96
smart00774	59	WRKY DNA binding domain. The WRKY domain is a DNA	99.96
PF04500	62	FLYWCH: FLYWCH zinc finger domain; InterPro: IPR00	89.96
PF03101	91	FAR1: FAR1 DNA-binding domain; InterPro: IPR004330	84.72

>PF03106 WRKY: WRKY DNA -binding domain; InterPro: IPR003657 The WRKY domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger- like motif

Probab=99.96  E-value=1.7e-31  Score=198.74  Aligned_cols=59  Identities=68%  Similarity=1.322  Sum_probs=52.6

Q ss_pred             CCccchhhhcCccccCCCCCCcccccccCCccccccceecccCCCCEEEEEEecccCCC
Q 045509          142 LEDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSEDPTIVITTYEGQHCHH  200 (291)
Q Consensus       142 ~~DGy~WRKYGQK~Ikgs~~pRsYYRCt~~~C~akKqVqrs~~Dp~~~~~tY~G~H~H~  200 (291)
                      ++|||+|||||||.|+|+++||+||||++.+|+|+|+|||+.+|+.+++|||+|+|||+
T Consensus         1 ~~Dgy~WRKYGqK~i~g~~~pRsYYrCt~~~C~akK~Vqr~~~d~~~~~vtY~G~H~h~   59 (60)
T PF03106_consen    1 LDDGYRWRKYGQKNIKGSPYPRSYYRCTHPGCPAKKQVQRSADDPNIVIVTYEGEHNHP   59 (60)
T ss_dssp             --SSS-EEEEEEEEETTTTCEEEEEEEECTTEEEEEEEEEETTCCCEEEEEEES--SS-
T ss_pred             CCCCCchhhccCcccCCCceeeEeeeccccChhheeeEEEecCCCCEEEEEEeeeeCCC
Confidence            47999999999999999999999999999999999999999999999999999999996

The WRKY domain is found in one or two copies in a superfamily of plant transcription factors involved in the regulation of various physiological programs that are unique to plants, including pathogen defence, senescence, trichome development and the biosynthesis of secondary metabolites. The WRKY domain binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core of the W box is essential for function and WRKY binding []. Some proteins known to contain a WRKY domain include Arabidopsis thaliana ZAP1 (Zinc-dependent Activator Protein-1) and AtWRKY44/TTG2, a protein involved in trichome development and anthocyanin pigmentation; and wild oat ABF1-2, two proteins involved in the gibberelic acid-induced expression of the alpha-Amy2 gene. Structural studies indicate that this domain is a four-stranded beta-sheet with a zinc binding pocket, forming a novel zinc and DNA binding structure []. The WRKYGQK residues correspond to the most N-terminal beta-strand, which enables extensive hydrophobic interactions, contributing to the structural stability of the beta-sheet.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2AYD_A 1WJ2_A 2LEX_A.

>smart00774 WRKY DNA binding domain

Probab=99.96  E-value=1.7e-30  Score=193.64  Aligned_cols=58  Identities=66%  Similarity=1.296  Sum_probs=56.3

Q ss_pred             CCccchhhhcCccccCCCCCCcccccccC-CccccccceecccCCCCEEEEEEecccCC
Q 045509          142 LEDGYRWRKYGQKAVKNSPFPRSYYRCTN-SKCTVKKRVERSSEDPTIVITTYEGQHCH  199 (291)
Q Consensus       142 ~~DGy~WRKYGQK~Ikgs~~pRsYYRCt~-~~C~akKqVqrs~~Dp~~~~~tY~G~H~H  199 (291)
                      ++|||.|||||||.|+|+++||+|||||+ ++|+|+|+|||+.+|+.+++|||+|+|||
T Consensus         1 ~~DGy~WRKYGQK~ikgs~~pRsYYrCt~~~~C~a~K~Vq~~~~d~~~~~vtY~g~H~h   59 (59)
T smart00774        1 LDDGYQWRKYGQKVIKGSPFPRSYYRCTYSQGCPAKKQVQRSDDDPSVVEVTYEGEHTH   59 (59)
T ss_pred             CCCcccccccCcEecCCCcCcceEEeccccCCCCCcccEEEECCCCCEEEEEEeeEeCC
Confidence            47999999999999999999999999999 89999999999999999999999999998

The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants, including pathogen defense, senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core is essential for function and WRKY binding.

>PF04500 FLYWCH: FLYWCH zinc finger domain; InterPro: IPR007588 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=89.96  E-value=0.16  Score=35.62  Aligned_cols=48  Identities=25%  Similarity=0.573  Sum_probs=23.8

Q ss_pred             CCccchhhhcCccccCCCCCCcccccccCC---ccccccceecccCCCCEEEEEEecccCC
Q 045509          142 LEDGYRWRKYGQKAVKNSPFPRSYYRCTNS---KCTVKKRVERSSEDPTIVITTYEGQHCH  199 (291)
Q Consensus       142 ~~DGy~WRKYGQK~Ikgs~~pRsYYRCt~~---~C~akKqVqrs~~Dp~~~~~tY~G~H~H  199 (291)
                      .-|||.-+++...      ....|+||+..   +|.|+=.+.  .++.  .++...++|||
T Consensus        12 ~~~Gy~y~~~~~~------~~~~~WrC~~~~~~~C~a~~~~~--~~~~--~~~~~~~~HnH   62 (62)
T PF04500_consen   12 VYDGYRYYFNKRN------DGKTYWRCSRRRSHGCRARLITD--AGDG--RVVRTNGEHNH   62 (62)
T ss_dssp             EETTEEEEEEEE-------SS-EEEEEGGGTTS----EEEEE----TT--EEEE-S---SS
T ss_pred             EECCeEEECcCCC------CCcEEEEeCCCCCCCCeEEEEEE--CCCC--EEEECCCccCC
Confidence            4578886654444      45689999985   799977666  3344  34445599998

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a potential FLYWCH Zn-finger domain found in a number of eukaryotic proteins. FLYWCH is a C2H2-type zinc finger characterised by five conserved hydrophobic residues, containing the conserved sequence motif: F/Y-X(n)-L-X(n)-F/Y-X(n)-WXCX(6-12)CX(17-22)HXH where X indicates any amino acid. This domain was first characterised in Drosophila Modifier of mdg4 proteins, Mod(mgd4), putative chromatin modulators involved in higher order chromatin domains. Mod(mdg4) proteins share a common N-terminal BTB/POZ domain, but differ in their C-terminal region, most containing C-terminal FLYWCH zinc finger motifs []. The FLYWCH domain in Mod(mdg4) proteins has a putative role in protein-protein interactions; for example, Mod(mdg4)-67.2 interacts with DNA-binding protein Su(Hw) via its FLYWCH domain. FLYWCH domains have been described in other proteins as well, including suppressor of killer of prune, Su(Kpn), which contains 4 terminal FLYWCH zinc finger motifs in a tandem array and a C-terminal glutathione SH-transferase (GST) domain []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2RPR_A.

>PF03101 FAR1: FAR1 DNA-binding domain; InterPro: IPR004330 Phytochrome A is the primary photoreceptor for mediating various far-red light-induced responses in higher plants

Probab=84.72  E-value=0.66  Score=35.32  Aligned_cols=30  Identities=23%  Similarity=0.396  Sum_probs=25.5

Q ss_pred             ccccccceecccCCCCEEEEEEecccCCCCC
Q 045509          172 KCTVKKRVERSSEDPTIVITTYEGQHCHHTV  202 (291)
Q Consensus       172 ~C~akKqVqrs~~Dp~~~~~tY~G~H~H~~~  202 (291)
                      +|+|+=.|.+.. ++...++.+..+|||+..
T Consensus        61 gC~a~i~v~~~~-~~~w~v~~~~~~HNH~L~   90 (91)
T PF03101_consen   61 GCKARINVKRRK-DGKWRVTSFVLEHNHPLC   90 (91)
T ss_pred             CCCEEEEEEEcc-CCEEEEEECcCCcCCCCC
Confidence            899998888776 777888999999999853

It has been found that the proteins governing this response, which include FAR-RED ELONGATED HYPOCOTYL3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1), are a pair of homologous proteins sharing significant sequence homology to mutator-like transposases. These proteins appear to be novel transcription factors, which are essential for activating the expression of FHY1 and FHL (for FHY1-like) and related genes, whose products are required for light-induced phytochrome A nuclear accumulation and subsequent light responses in plants. The FRS (FAR1 Related Sequences) family of proteins share a similar domain structure to mutator-like transposases, including an N-terminal C2H2 zinc finger domain, a central putative core transposase domain, and a C-terminal SWIM motif (named after SWI2/SNF and MuDR transposases). It seems plausible that the FRS family represent transcription factors derived from mutator-like transposases [, ]. This entry represents a domain found in FAR1 and FRS proteins. It contains a WRKY like fold and is therefore most likely a zinc binding DNA-binding domain.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	291
1wj2_A	78	Solution Structure Of The C-Terminal Wrky Domain Of		3e-21
2ayd_A	76	Crystal Structure Of The C-Terminal Wrky Domainof A		6e-20

>pdb|1WJ2|A Chain A, Solution Structure Of The C-Terminal Wrky Domain Of Atwrky4 Length = 78

Iteration: 1
 Score = 98.6 bits (244), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 43/68 (63%), Positives = 52/68 (76%)
Query: 132 AFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSEDPTIVIT 191
              T SEVD L+DGYRWRKYGQK VK +P+PRSYY+CT   C V+K VER++ DP  V+T
Sbjct: 7   GVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVT 66
Query: 192 TYEGQHCH 199
           TYEG+H H
Sbjct: 67  TYEGKHNH 74

>pdb|2AYD|A Chain A, Crystal Structure Of The C-Terminal Wrky Domainof Atwrky1, An Sa-Induced And Partially Npr1-Dependent Transcription Factor Length = 76

Iteration: 1
 Score = 94.4 bits (233), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 43/70 (61%), Positives = 53/70 (75%)
Query: 130 RFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSEDPTIV 189
           R    T++  D + DGYRWRKYGQK+VK SP+PRSYYRC++  C VKK VERSS D  ++
Sbjct: 2   RIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLL 61
Query: 190 ITTYEGQHCH 199
           ITTYEG+H H
Sbjct: 62  ITTYEGKHDH 71
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	291
1wj2_A	78	Probable WRKY transcription factor 4; DNA-binding	3e-45
2ayd_A	76	WRKY transcription factor 1; beta strands, zinc fi	3e-42

>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A* Length = 78

 Score =  146 bits (371), Expect = 3e-45
 Identities = 43/73 (58%), Positives = 52/73 (71%)

Query: 127 RQPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSEDP 186
                   T SEVD L+DGYRWRKYGQK VK +P+PRSYY+CT   C V+K VER++ DP
Sbjct: 2   SSGSSGVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDP 61

Query: 187 TIVITTYEGQHCH 199
             V+TTYEG+H H
Sbjct: 62  KAVVTTYEGKHNH 74

>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana} Length = 76

 Score =  139 bits (351), Expect = 3e-42
 Identities = 43/70 (61%), Positives = 53/70 (75%)

Query: 130 RFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSEDPTIV 189
           R    T++  D + DGYRWRKYGQK+VK SP+PRSYYRC++  C VKK VERSS D  ++
Sbjct: 2   RIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLL 61

Query: 190 ITTYEGQHCH 199
           ITTYEG+H H
Sbjct: 62  ITTYEGKHDH 71

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	291
2ayd_A	76	WRKY transcription factor 1; beta strands, zinc fi	100.0
1wj2_A	78	Probable WRKY transcription factor 4; DNA-binding	100.0

>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}

Probab=100.00  E-value=4.5e-34  Score=221.16  Aligned_cols=73  Identities=59%  Similarity=1.063  Sum_probs=69.7

Q ss_pred             eeEEeccCccCCCCccchhhhcCccccCCCCCCcccccccCCccccccceecccCCCCEEEEEEecccCCCCC
Q 045509          130 RFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSEDPTIVITTYEGQHCHHTV  202 (291)
Q Consensus       130 r~~~~t~se~d~~~DGy~WRKYGQK~Ikgs~~pRsYYRCt~~~C~akKqVqrs~~Dp~~~~~tY~G~H~H~~~  202 (291)
                      ++++.|.+++++++|||+|||||||.|||++|||+|||||+.+|+|+|+|||+.+|+.+++|||+|+|||+.|
T Consensus         2 r~~v~t~~~~~~~~DGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p   74 (76)
T 2ayd_A            2 RIVVHTQTLFDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDHDMP   74 (76)
T ss_dssp             EEEEEEECSSSCCCCSSCEEEEEEECCTTCSSCEEEEEECSTTCCCEEEEEECSSSTTEEEEEEESCCSSCCC
T ss_pred             eEEEEecCCCCcCCCCchhhhCcccccCCCCCceeEeEcCCCCCCceeeEEEECCCCCEEEEEEccCcCCCCC
Confidence            5778888999999999999999999999999999999999999999999999999999999999999999865

>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*

Probab=100.00  E-value=5.1e-34  Score=221.83  Aligned_cols=73  Identities=59%  Similarity=1.075  Sum_probs=67.8

Q ss_pred             eeEEeccCccCCCCccchhhhcCccccCCCCCCcccccccCCccccccceecccCCCCEEEEEEecccCCCCC
Q 045509          130 RFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSEDPTIVITTYEGQHCHHTV  202 (291)
Q Consensus       130 r~~~~t~se~d~~~DGy~WRKYGQK~Ikgs~~pRsYYRCt~~~C~akKqVqrs~~Dp~~~~~tY~G~H~H~~~  202 (291)
                      ++++.|.+++++++|||+|||||||.|||++|||+|||||+.+|+|+|+|||+.+|+.+++|||+|+|||+.|
T Consensus         5 ~~~~~t~s~~~~~dDGy~WRKYGQK~ikgs~~PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p   77 (78)
T 1wj2_A            5 SSGVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLP   77 (78)
T ss_dssp             ---CCCCCCCCCCCSSSCBCCCEEECCTTCSSCEEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCCC
T ss_pred             eEEEeccCCCCcCCCCchhhhCcccccCCCcCeeEEeecCcCCCCcEeeEEEEcCCCCEEEEEEeeEcCCCCC
Confidence            5677888999999999999999999999999999999999999999999999999999999999999999865

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	291
d1wj2a_	71	g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cr	4e-32

>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 71

class: Small proteins
fold: WRKY DNA-binding domain
superfamily: WRKY DNA-binding domain
family: WRKY DNA-binding domain
domain: WRKY DNA-binding protein 4
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  111 bits (279), Expect = 4e-32
 Identities = 43/65 (66%), Positives = 52/65 (80%)

Query: 135 TKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSEDPTIVITTYE 194
           T SEVD L+DGYRWRKYGQK VK +P+PRSYY+CT   C V+K VER++ DP  V+TTYE
Sbjct: 3   TTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYE 62

Query: 195 GQHCH 199
           G+H H
Sbjct: 63  GKHNH 67

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	291
d1wj2a_	71	WRKY DNA-binding protein 4 {Thale cress (Arabidops	99.98

>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: WRKY DNA-binding domain
superfamily: WRKY DNA-binding domain
family: WRKY DNA-binding domain
domain: WRKY DNA-binding protein 4
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.98  E-value=6.3e-34  Score=216.16  Aligned_cols=69  Identities=62%  Similarity=1.148  Sum_probs=65.4

Q ss_pred             eccCccCCCCccchhhhcCccccCCCCCCcccccccCCccccccceecccCCCCEEEEEEecccCCCCC
Q 045509          134 MTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSEDPTIVITTYEGQHCHHTV  202 (291)
Q Consensus       134 ~t~se~d~~~DGy~WRKYGQK~Ikgs~~pRsYYRCt~~~C~akKqVqrs~~Dp~~~~~tY~G~H~H~~~  202 (291)
                      .|.+++++++|||+|||||||.|+|+++||+||||++++|+|+|+|||+.+||.+++|||+|+|||+.|
T Consensus         2 ~t~~~~~~~dDGy~WRKYGQK~ikgs~~pRsYYrCt~~~C~a~K~Vqr~~~d~~~~~vtY~G~H~h~~P   70 (71)
T d1wj2a_           2 QTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLP   70 (71)
T ss_dssp             CCCCCCCCCCSSSCBCCCEEECCTTCSSCEEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCCC
T ss_pred             ccccccccCCCCcEecccCceeccCCCCceEEEEccccCCCCcceEEEEcCCCCEEEEEEeeEeCCCCC
Confidence            356788899999999999999999999999999999999999999999999999999999999999765