Citrus Sinensis ID: 045562
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 525 | 2.2.26 [Sep-21-2011] | |||||||
| Q0WP01 | 557 | Probable peptide/nitrate | yes | no | 0.975 | 0.919 | 0.661 | 0.0 | |
| Q0WSZ6 | 561 | Probable peptide/nitrate | no | no | 0.973 | 0.910 | 0.574 | 1e-162 | |
| Q9C7U1 | 555 | Probable peptide/nitrate | no | no | 0.942 | 0.891 | 0.566 | 1e-160 | |
| Q9SK99 | 565 | Probable peptide/nitrate | no | no | 0.973 | 0.904 | 0.565 | 1e-160 | |
| Q8VZE2 | 557 | Probable peptide/nitrate | no | no | 0.958 | 0.903 | 0.577 | 1e-159 | |
| Q9SK96 | 564 | Probable peptide/nitrate | no | no | 0.975 | 0.907 | 0.558 | 1e-155 | |
| Q8RX67 | 538 | Probable peptide/nitrate | no | no | 0.883 | 0.862 | 0.557 | 1e-144 | |
| Q9M1I2 | 555 | Probable peptide/nitrate | no | no | 0.912 | 0.863 | 0.431 | 1e-126 | |
| Q9M390 | 570 | Peptide transporter PTR1 | no | no | 0.96 | 0.884 | 0.415 | 1e-113 | |
| P0CI03 | 575 | Putative peptide/nitrate | no | no | 0.961 | 0.878 | 0.399 | 1e-112 |
| >sp|Q0WP01|PTR9_ARATH Probable peptide/nitrate transporter At1g22540 OS=Arabidopsis thaliana GN=At1g22540 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 656 bits (1692), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/526 (66%), Positives = 414/526 (78%), Gaps = 14/526 (2%)
Query: 1 MAIS-EVLEAERPLVEDDVVDGCVDYKGRPVNNRSKYGGWRSALFIIGVEMAERFAYYGV 59
M+IS V EA PL+ V DY+ +P +S GGWRSA FIIGVE+AERFAYYG+
Sbjct: 1 MSISGAVDEAGTPLLAVTV-----DYRNKPAV-KSSSGGWRSAGFIIGVEVAERFAYYGI 54
Query: 60 SSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVL 119
SSNLITYLTGPL QSTA AA NVNAWSG ASLLPL GAF+ADSFLGR+R I+ AS +Y++
Sbjct: 55 SSNLITYLTGPLGQSTAAAAANVNAWSGTASLLPLLGAFVADSFLGRFRTILAASALYIV 114
Query: 120 GLGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQF 179
GLG+LTLSA++ S +SCS +FQVI FF +LYL+AL QGGHKPCVQAFGADQF
Sbjct: 115 GLGVLTLSAMIPSDCKVSNLLSSCSP-RFQVITFFSALYLVALAQGGHKPCVQAFGADQF 173
Query: 180 DSQHPLESKLKSSFFNWWYFGMCMGTFVTLTVLNYIQDNLNWILGFGIPCILMVIALVVF 239
D + P E K KSSFFNWWYFGMC GT TL VLNYIQDNL+W LGFGIPCI MV+ALVV
Sbjct: 174 DEKEPEECKAKSSFFNWWYFGMCFGTLTTLWVLNYIQDNLSWALGFGIPCIAMVVALVVL 233
Query: 240 LLGTKIYRYSLKGEEKSPFLRIGQVFVTAVRNWRITPSAIALEEEARGTLPHQSSEQFKF 299
LLGT YR+S++ E++SPF+RIG V+V AV+NW ++ +A EE G + SS+QF F
Sbjct: 234 LLGTCTYRFSIRREDQSPFVRIGNVYVAAVKNWSVSALDVAAAEERLGLVSCSSSQQFSF 293
Query: 300 LNKALLASNGSKGYGKVCSVGEVEEAKALLRLVPIWTTCLVYAIVFAQSSTFFTKQGVTM 359
LNKAL+A NGS CS+ E+EEAK++LRL PIW TCLVYA+VFAQS TFFTKQG TM
Sbjct: 294 LNKALVAKNGS------CSIDELEEAKSVLRLAPIWLTCLVYAVVFAQSPTFFTKQGATM 347
Query: 360 DRSVVADFQIPAASLQSFISLAIVLTIPIYDRIFVPIARTFTRKPAGITMLQRIGTGMFL 419
+RS+ ++I A+LQSFISL+IV+ IPIYDR+ +PIAR+FT KP GITMLQRIGTG+FL
Sbjct: 348 ERSITPGYKISPATLQSFISLSIVIFIPIYDRVLIPIARSFTHKPGGITMLQRIGTGIFL 407
Query: 420 SAASMTGATLVEMKRLKTAEEYGLVDKPNVTIPMSVWWLIPQYALLGVSEAFTMVGLQEF 479
S +M A LVEMKRLKTA +YGLVD P+ T+PMSVWWL+PQY L G+++ F MVGLQEF
Sbjct: 408 SFLAMVVAALVEMKRLKTAADYGLVDSPDATVPMSVWWLVPQYVLFGITDVFAMVGLQEF 467
Query: 480 FYDQVPTELRSVGLSLYLSIFGVGSFLSSFLISAIENATGGDGRDS 525
FYDQVP ELRSVGL+LYLSIFG+G+FLSSF+IS IE AT G+ S
Sbjct: 468 FYDQVPNELRSVGLALYLSIFGIGNFLSSFMISIIEKATSQSGQAS 513
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0WSZ6|PTR23_ARATH Probable peptide/nitrate transporter At1g72125 OS=Arabidopsis thaliana GN=At1g72125 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 571 bits (1471), Expect = e-162, Method: Compositional matrix adjust.
Identities = 298/519 (57%), Positives = 377/519 (72%), Gaps = 8/519 (1%)
Query: 9 AERPLVEDDVVDGCVDYKGRPVNNRSKYGGWRSALFIIGVEMAERFAYYGVSSNLITYLT 68
++ L E+ V+D VD++G RS G WR+A FIIGVE+AERFA YG+ SNLI+YLT
Sbjct: 5 SKTSLQEEYVIDA-VDHRGFSAR-RSITGRWRAAWFIIGVEVAERFANYGIGSNLISYLT 62
Query: 69 GPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVLGLGLLTLSA 128
GPL QSTA AA NVNAWSG++++LPL GAF+AD+FLGRY IIIAS IYVLGL LTLSA
Sbjct: 63 GPLGQSTAVAAANVNAWSGISTILPLLGAFVADAFLGRYITIIIASFIYVLGLAFLTLSA 122
Query: 129 VLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESK 188
L+ +T + S + F FFFSLYL+A+GQ GHKPCVQAFGADQFD ++P E+
Sbjct: 123 FLIPNNT----EVTSSPSSFLNALFFFSLYLVAIGQSGHKPCVQAFGADQFDEKNPQENS 178
Query: 189 LKSSFFNWWYFGMCMGTFVTLTVLNYIQDNLNWILGFGIPCILMVIALVVFLLGTKIYRY 248
+SSFFNWWY MC G + + V+ YIQ+N++W LGFGIPC+ MVI+LV+F+LG K YR+
Sbjct: 179 DRSSFFNWWYLSMCAGIGLAILVVVYIQENVSWALGFGIPCVFMVISLVLFVLGRKSYRF 238
Query: 249 S--LKGEEKSPFLRIGQVFVTAVRNWRITPSAIALEEEARGTLPHQSSEQFKFLNKALLA 306
S + EE +PF RIG+VF A +N R+ S + E +S E+ FLNKALL
Sbjct: 239 SKTRQEEETNPFTRIGRVFFVAFKNQRLNSSDLCKVELIEANRSQESPEELSFLNKALLV 298
Query: 307 SNGSKGYGKVCSVGEVEEAKALLRLVPIWTTCLVYAIVFAQSSTFFTKQGVTMDRSVVAD 366
N S C +VE+A AL+RL+P+W T L YAI FAQ TFFTKQGVTM+R++
Sbjct: 299 PNDSDEGEVACKSRDVEDATALVRLIPVWLTTLAYAIPFAQYMTFFTKQGVTMERTIFPG 358
Query: 367 FQIPAASLQSFISLAIVLTIPIYDRIFVPIARTFTRKPAGITMLQRIGTGMFLSAASMTG 426
+IP ASLQ IS++IVL +PIYDR+ VPI R+ T+ P GIT L+RIGTGM L+ +M
Sbjct: 359 VEIPPASLQVLISISIVLFVPIYDRVLVPIGRSITKDPCGITTLKRIGTGMVLATLTMVV 418
Query: 427 ATLVEMKRLKTAEEYGLVDKPNVTIPMSVWWLIPQYALLGVSEAFTMVGLQEFFYDQVPT 486
A LVE KRL+TA+EYGL+D+P T+PMS+WWL PQY LLG+++ T+VG+QEFFY QVPT
Sbjct: 419 AALVESKRLETAKEYGLIDQPKTTLPMSIWWLFPQYMLLGLADVHTLVGMQEFFYSQVPT 478
Query: 487 ELRSVGLSLYLSIFGVGSFLSSFLISAIENATGGDGRDS 525
ELRS+GL++YLS GVGS LSS LI I+ ATGGD +S
Sbjct: 479 ELRSLGLAIYLSAMGVGSLLSSLLIYLIDLATGGDAGNS 517
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9C7U1|PTR25_ARATH Probable peptide/nitrate transporter At1g72140 OS=Arabidopsis thaliana GN=At1g72140 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 565 bits (1455), Expect = e-160, Method: Compositional matrix adjust.
Identities = 294/519 (56%), Positives = 376/519 (72%), Gaps = 24/519 (4%)
Query: 13 LVEDDVVDGCVDYKGRPVNNRSKYGGWRSALFIIGVEMAERFAYYGVSSNLITYLTGPLA 72
+V ++ V+ VD++G P + RS G W+S+ F + E+AE+FAY+G++SNLITY T L
Sbjct: 13 IVSNENVEFSVDFRGNP-SIRSSSGAWKSSGFTMCAEVAEKFAYFGIASNLITYFTEALG 71
Query: 73 QSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVLGLGLLTLSAVLLS 132
+STA AA NVN W G A+ LPL +ADSFLGR+R I++ S Y++GLGLLT SA + S
Sbjct: 72 ESTAVAASNVNLWLGTAAFLPLIWGSIADSFLGRFRTILLTSSFYIMGLGLLTFSATIPS 131
Query: 133 GSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSS 192
+ SC +Q +VI FF +LYLIALG+GG K C++AFGADQFD Q P ESK KSS
Sbjct: 132 LCNDQETRESC-VSQVKVIIFFCALYLIALGEGGFKVCLRAFGADQFDEQDPNESKAKSS 190
Query: 193 FFNWWYFGMCMGTFVTLTVLNYIQDNLNWILGFGIPCILMVIALVVFLLGTKIYRYSLKG 252
+FNW YF + +G T V NY+Q+NL+W LG+ IPC+ M++AL +FLLG K YR+S G
Sbjct: 191 YFNWLYFAISIGILTTRLVTNYVQENLSWALGYAIPCLSMMLALFLFLLGIKTYRFSTGG 250
Query: 253 E------EKSPFLRIGQVFVTAVRNWRITPSAIALEEEARGTLPHQSSEQFKFLNKALLA 306
E +PF+RIG+VFV A RN R TPS L LP++S+++F+FL++A+++
Sbjct: 251 EGRQGKKHDNPFVRIGRVFVAAARNRRQTPSDTCL------LLPNESTKKFRFLDRAVIS 304
Query: 307 SNGSKGYGKVCSVGEVEEAKALLRLVPIWTTCLVYAIVFAQSSTFFTKQGVTMDRSVVAD 366
C EVEEAKA+L L+PIW LV+ IVFAQS TFFTKQG TMDRS+ +
Sbjct: 305 ----------CDSYEVEEAKAVLSLIPIWLCSLVFGIVFAQSPTFFTKQGSTMDRSISST 354
Query: 367 FQIPAASLQSFISLAIVLTIPIYDRIFVPIARTFTRKPAGITMLQRIGTGMFLSAASMTG 426
Q+PAA+LQ FISLAI++ IPIYDR+FVPIAR+ TRKPAGIT LQRI TG+FLS SM
Sbjct: 355 LQVPAATLQCFISLAILVFIPIYDRLFVPIARSITRKPAGITTLQRISTGIFLSIISMVI 414
Query: 427 ATLVEMKRLKTAEEYGLVDKPNVTIPMSVWWLIPQYALLGVSEAFTMVGLQEFFYDQVPT 486
A LVEMKRLKTA ++GLVD P T+PMSV WLIPQY L GVS+ FTMVGLQEFFY +VP
Sbjct: 415 AALVEMKRLKTARDHGLVDSPKATVPMSVCWLIPQYILFGVSDVFTMVGLQEFFYGEVPP 474
Query: 487 ELRSVGLSLYLSIFGVGSFLSSFLISAIENATGGDGRDS 525
+LRS+GL+LYLSI G+G+FLSSF++S IE AT G+ S
Sbjct: 475 QLRSMGLALYLSIIGIGNFLSSFMVSVIEEATSQSGQVS 513
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SK99|PTR11_ARATH Probable peptide/nitrate transporter At1g22570 OS=Arabidopsis thaliana GN=At1g22570 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 563 bits (1452), Expect = e-160, Method: Compositional matrix adjust.
Identities = 298/527 (56%), Positives = 387/527 (73%), Gaps = 16/527 (3%)
Query: 5 EVLEAERPLVEDDVVDGCVDYKGRPVNNRSKYGGWRSALFIIGVEMAERFAYYGVSSNLI 64
++ E E L+ED V D VD++G P +S GGWRSA FIIGVE+AERFAY+G++ NLI
Sbjct: 2 KIPEEEVALLEDYVSD-SVDHRGFPAG-KSSTGGWRSAWFIIGVEVAERFAYFGIACNLI 59
Query: 65 TYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVLGLGLL 124
TYLTGPL QSTA AA NVN WSG AS+LP+ GAF+AD++LGRYR I++ASLIY+LGLGLL
Sbjct: 60 TYLTGPLGQSTAKAAVNVNTWSGTASILPILGAFVADAYLGRYRTIVVASLIYILGLGLL 119
Query: 125 TLSAVLLSGSTSECQNTSCSANQFQV-IFFFFSLYLIALGQGGHKPCVQAFGADQFDSQH 183
TLSA L+ S+ +N + + V FF SLYL+A+GQGGHKPCVQAFGADQFD++
Sbjct: 120 TLSASLIIMGLSKQRNDASAKPSIWVNTLFFCSLYLVAIGQGGHKPCVQAFGADQFDAED 179
Query: 184 PLESKLKSSFFNWWYFGMCMGTFVTLTVLNYIQDNLNWILGFGIPCILMVIALVVFLLGT 243
P E + SFFNWW+ + G +++ V+ Y+Q+N+NW GFGIPC+ MV+AL +FLLG
Sbjct: 180 PKEVIARGSFFNWWFLSLSAGISISIIVVAYVQENVNWAFGFGIPCLFMVMALAIFLLGR 239
Query: 244 KIYRYSLKGEEK----SPFLRIGQVFVTAVRNWRITPSAIALEEEARGTLPHQSSEQFK- 298
KIYRY E+ + F RIG+VFV A +N ++ +LE + +G L SE+ K
Sbjct: 240 KIYRYPKGHHEEVNSSNTFARIGRVFVIAFKNRKLRLEHSSLELD-QGLLEDGQSEKRKD 298
Query: 299 ---FLNKALLASNGSKGYGKVCSVGEVEEAKALLRLVPIWTTCLVYAIVFAQSSTFFTKQ 355
FL KA+++ G + CS +V++AKAL+RL+PIW T +V I +AQ TFFTKQ
Sbjct: 299 RLNFLAKAMISREGVEP----CSGRDVDDAKALVRLIPIWITYVVSTIPYAQYITFFTKQ 354
Query: 356 GVTMDRSVVADFQIPAASLQSFISLAIVLTIPIYDRIFVPIARTFTRKPAGITMLQRIGT 415
GVT+DR ++ +IPAASL SF+ ++I++++P+Y+R+F+PIAR T+KP GITMLQRIG
Sbjct: 355 GVTVDRRILPGVEIPAASLLSFVGVSILISVPLYERVFLPIARKITKKPFGITMLQRIGA 414
Query: 416 GMFLSAASMTGATLVEMKRLKTAEEYGLVDKPNVTIPMSVWWLIPQYALLGVSEAFTMVG 475
GM LS +M A LVE KRLK A E+GLVDKP+VT+PMS+WW +PQY LLG+ + F+MVG
Sbjct: 415 GMVLSVFNMMLAALVESKRLKIAREHGLVDKPDVTVPMSIWWFVPQYLLLGMIDLFSMVG 474
Query: 476 LQEFFYDQVPTELRSVGLSLYLSIFGVGSFLSSFLISAIENATGGDG 522
QEFFYDQVPTELRS+GLSL LS G+ SFLS FLIS I+ ATG DG
Sbjct: 475 TQEFFYDQVPTELRSIGLSLSLSAMGLSSFLSGFLISLIDWATGKDG 521
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8VZE2|PTR22_ARATH Probable peptide/nitrate transporter At1g72120 OS=Arabidopsis thaliana GN=At1g72120 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 560 bits (1444), Expect = e-159, Method: Compositional matrix adjust.
Identities = 297/514 (57%), Positives = 377/514 (73%), Gaps = 11/514 (2%)
Query: 14 VEDDVVDGCVDYKGRPVNNRSKYGGWRSALFIIGVEMAERFAYYGVSSNLITYLTGPLAQ 73
++++ V VD++G RS G WR+ALFIIGVE+AERFAYYG+ SNLI+YLTGPL +
Sbjct: 9 LQEEYVTDAVDHRGLAAR-RSNTGRWRAALFIIGVEVAERFAYYGIGSNLISYLTGPLGE 67
Query: 74 STATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVLGLGLLTLSAVLLSG 133
STA AA NVNAWSG+A+LLP+ GAF+AD+FLGRYR III+SLIYVLGL LTLSA L+
Sbjct: 68 STAVAAANVNAWSGIATLLPVLGAFVADAFLGRYRTIIISSLIYVLGLAFLTLSAFLIPN 127
Query: 134 STSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSF 193
+T +TS N + FFFSLYL+A+GQ GHKPCVQAFGADQFD + E +SSF
Sbjct: 128 TTEVTSSTSSFLN----VLFFFSLYLVAIGQSGHKPCVQAFGADQFDEKDSQEKSDRSSF 183
Query: 194 FNWWYFGMCMGTFVTLTVLNYIQDNLNWILGFGIPCILMVIALVVFLLGTKIYRYSLK-- 251
FNWWY + G + V+ YIQ+ +W GFGIPC+ MVI+LV+F+ G +IYRYS +
Sbjct: 184 FNWWYLSLSAGICFAILVVVYIQEEFSWAFGFGIPCVFMVISLVLFVSGRRIYRYSKRRH 243
Query: 252 GEEKSPFLRIGQVFVTAVRNWRITPSAIALEEEARGTLPHQSSEQFKFLNKALLASNGSK 311
EE +PF RIG+VF A++N R++ S + E T P + S F NKALL N S
Sbjct: 244 EEEINPFTRIGRVFFVALKNQRLSSSDLCKVELEANTSPEKQS----FFNKALLVPNDSS 299
Query: 312 GYGKVCSVGEVEEAKALLRLVPIWTTCLVYAIVFAQSSTFFTKQGVTMDRSVVADFQIPA 371
+VE+A AL+RL+P+W T L YAI +AQ TFFTKQGVTMDR+++ +IP
Sbjct: 300 QGENASKSSDVEDATALIRLIPVWFTTLAYAIPYAQYMTFFTKQGVTMDRTILPGVKIPP 359
Query: 372 ASLQSFISLAIVLTIPIYDRIFVPIARTFTRKPAGITMLQRIGTGMFLSAASMTGATLVE 431
ASLQ FI ++IVL +PIYDR+FVPIAR T++P GIT L+RIGTG+ LS +M A LVE
Sbjct: 360 ASLQVFIGISIVLFVPIYDRVFVPIARLITKEPCGITTLKRIGTGIVLSTITMVIAALVE 419
Query: 432 MKRLKTAEEYGLVDKPNVTIPMSVWWLIPQYALLGVSEAFTMVGLQEFFYDQVPTELRSV 491
KRL+TA+E+GL+D+P T+PMS+WWLIPQY LLG+++ +T+VG+QEFFY QVPTELRS+
Sbjct: 420 FKRLETAKEHGLIDQPEATLPMSIWWLIPQYLLLGLADVYTLVGMQEFFYSQVPTELRSI 479
Query: 492 GLSLYLSIFGVGSFLSSFLISAIENATGGDGRDS 525
GL+LYLS GVGS LSS LIS I+ ATGGD +S
Sbjct: 480 GLALYLSALGVGSLLSSLLISLIDLATGGDAGNS 513
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SK96|PTR10_ARATH Probable peptide/nitrate transporter At1g22550 OS=Arabidopsis thaliana GN=At1g22550 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 550 bits (1417), Expect = e-155, Method: Compositional matrix adjust.
Identities = 294/526 (55%), Positives = 380/526 (72%), Gaps = 14/526 (2%)
Query: 6 VLEAERPLVEDDVVDGCVDYKGRPVNNRSKYGGWRSALFIIGVEMAERFAYYGVSSNLIT 65
+ E E L+ED V D VD++G P +S GGWRSA +IIGVE+ ERFAY+G+ SNLIT
Sbjct: 3 IAEEEAALIEDSVSD-SVDHRGLPAG-KSSTGGWRSAWYIIGVEVGERFAYFGIGSNLIT 60
Query: 66 YLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVLGLGLLT 125
YLTGPL QSTATAA NVN WSG AS+LP+ GAF+AD++LGRYR I++ASLIY+LGLGLLT
Sbjct: 61 YLTGPLGQSTATAAVNVNTWSGTASILPVLGAFIADAYLGRYRTIVVASLIYILGLGLLT 120
Query: 126 LSAVLLSGSTSECQ--NTSCSANQF--QVIFFFFSLYLIALGQGGHKPCVQAFGADQFDS 181
LS++L+ SE + N + SA F I FF SLYL+A+GQGGHKPCVQAFGADQFD
Sbjct: 121 LSSILILMGLSEQRQHNRNASAKPFFWVNILFFCSLYLVAIGQGGHKPCVQAFGADQFDV 180
Query: 182 QHPLESKLKSSFFNWWYFGMCMGTFVTLTVLNYIQDNLNWILGFGIPCILMVIALVVFLL 241
P E + SFFNWW+ + G +++ V+ Y+QDN+NW LGFGIPC+ MV+AL +FL
Sbjct: 181 GDPKERISRGSFFNWWFLSLSAGITLSIIVVVYVQDNVNWALGFGIPCLFMVMALALFLF 240
Query: 242 GTKIYRYSLKGEE--KSPFLRIGQVFVTAVRNWRITPSAIALEEEARGTLPHQSSEQFKF 299
G K YRY E + F RIG+VF+ A +N ++ + E + Q +F
Sbjct: 241 GRKTYRYPRGDREGKNNAFARIGRVFLVAFKNRKLKLTHSGQLEVGS---YKKCKGQLEF 297
Query: 300 LNKALLASNGSKGYGKVCSVGEVEEAKALLRLVPIWTTCLVYAIVFAQSSTFFTKQGVTM 359
L KALL G + CS +VE+A AL+RL+PIW T +V I +AQ +TFFTKQGVT+
Sbjct: 298 LAKALLPGEGGV---EPCSSRDVEDAMALVRLIPIWITSVVSTIPYAQYATFFTKQGVTV 354
Query: 360 DRSVVADFQIPAASLQSFISLAIVLTIPIYDRIFVPIARTFTRKPAGITMLQRIGTGMFL 419
DR ++ F+IP AS Q+ I L+I +++P Y+R+F+P+AR T+KP+GITMLQRIG GM L
Sbjct: 355 DRKILPGFEIPPASFQALIGLSIFISVPTYERVFLPLARLITKKPSGITMLQRIGAGMVL 414
Query: 420 SAASMTGATLVEMKRLKTAEEYGLVDKPNVTIPMSVWWLIPQYALLGVSEAFTMVGLQEF 479
S+ +M A LVEMKRL+TA+E+GLVD+P+ TIPMS+WW +PQY LLG+ + F++VG QEF
Sbjct: 415 SSLNMVVAALVEMKRLETAKEHGLVDRPDATIPMSIWWFVPQYLLLGMIDVFSLVGTQEF 474
Query: 480 FYDQVPTELRSVGLSLYLSIFGVGSFLSSFLISAIENATGGDGRDS 525
FYDQVPTELRS+GL+L LS G+ SFLS FLI+ I ATG +G DS
Sbjct: 475 FYDQVPTELRSIGLALSLSAMGLASFLSGFLITVINWATGKNGGDS 520
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8RX67|PTR24_ARATH Probable peptide/nitrate transporter At1g72130 OS=Arabidopsis thaliana GN=At1g72130 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 513 bits (1320), Expect = e-144, Method: Compositional matrix adjust.
Identities = 275/493 (55%), Positives = 355/493 (72%), Gaps = 29/493 (5%)
Query: 37 GGWRSALFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFG 96
GGW+SA II V+MAERFAY+G++SNLI YLTGPL +STA AA NVNAW+G + LPL G
Sbjct: 27 GGWKSARLIIVVQMAERFAYFGIASNLIMYLTGPLGESTAAAAANVNAWTGTVAFLPLLG 86
Query: 97 AFLADSFLGRYRAIIIASLIYVLGLGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFS 156
FLADS+LGR+R III+S +Y+LGLGLL+ S ++ S + S +NQ Q FFFS
Sbjct: 87 GFLADSYLGRFRTIIISSSLYILGLGLLSFSTMIPS-------HQSKDSNQLQETIFFFS 139
Query: 157 LYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWYFGMCMGTFVTLTVLNYIQ 216
LYL+A+GQGG+ PC++ FGADQFD E++ KSSFFNW FG C+ T V YIQ
Sbjct: 140 LYLVAIGQGGYNPCIKVFGADQFDGNDHKEARDKSSFFNWLMFGNCISILTTRLVSTYIQ 199
Query: 217 DNLNWILGFGIPCILMVIALVVFLLGTKIYRYSL-KGEEKSPFLRIGQVFVTAVRNWRIT 275
+NL+W LGFGIP + M+++L +FLLGT YR+S + +K+PF RI +VF+ A++N R
Sbjct: 200 ENLSWSLGFGIPSVSMLLSLFLFLLGTTSYRFSTERVGKKNPFARISRVFMEALKN-RRQ 258
Query: 276 PS---AIALEEEARGTLPHQSSEQFKFLNKALLASNGSKGYGKVCSVGEVEEAKALLRLV 332
P A A E L HQSS+QF+FL++A ++ C + E+EEAKA+LRL+
Sbjct: 259 PDLDIANANANETLLLLAHQSSKQFRFLDRAAIS----------CELAEIEEAKAVLRLI 308
Query: 333 PIWTTCLVYAIVFAQSSTFFTKQGVTMDRSVVADFQIPAASLQSFISLAIVLTIPIYDRI 392
PIW T +VY IV AQS TFFTKQG TMDRS+ +PAA+LQSFI+L++V+ IPIYDR+
Sbjct: 309 PIWITSVVYTIVHAQSPTFFTKQGATMDRSISPGLLVPAATLQSFINLSVVVFIPIYDRL 368
Query: 393 FVPIARTFTRKPAGITMLQRIGTGMFLSAASMTGATLVEMKRLKTAEEYGLVDKPNVTIP 452
VP AR+FT+ +GIT LQRIGTG+FLS +M A LVE KRL+ A + ++IP
Sbjct: 369 LVPFARSFTQNSSGITTLQRIGTGIFLSILAMVLAALVETKRLQAARD-------ELSIP 421
Query: 453 MSVWWLIPQYALLGVSEAFTMVGLQEFFYDQVPTELRSVGLSLYLSIFGVGSFLSSFLIS 512
MSVWWLIPQY + GVS+ FTMVGLQEFFY QVP+ELRSVG++L LSI+G G++LSSF+IS
Sbjct: 422 MSVWWLIPQYVIFGVSDMFTMVGLQEFFYGQVPSELRSVGMALNLSIYGAGNYLSSFMIS 481
Query: 513 AIENATGGDGRDS 525
I+ T G+ S
Sbjct: 482 VIDKITNQYGQRS 494
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M1I2|PTR46_ARATH Probable peptide/nitrate transporter At3g54450 OS=Arabidopsis thaliana GN=At3g54450 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 453 bits (1165), Expect = e-126, Method: Compositional matrix adjust.
Identities = 221/512 (43%), Positives = 331/512 (64%), Gaps = 33/512 (6%)
Query: 30 VNNRSKYGGWRSALFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVA 89
+N R+K GGW +ALFII VE+AERFA+YG++SNLIT+LT L QSTATAA+N+N W GV+
Sbjct: 8 INKRTK-GGWNAALFIIVVEIAERFAFYGLASNLITFLTNELGQSTATAAKNINTWIGVS 66
Query: 90 SLLPLFGAFLADSFLGRYRAIIIASLIYVLGLGLLTLSAVLLSGSTSECQNTSCSANQFQ 149
+ P+ GAFLADS LGR++ +++ S IY+LG+ +L LS +++ E
Sbjct: 67 CMFPILGAFLADSILGRFKTVLLTSFIYLLGIVMLPLSVTVVARRMREK----------- 115
Query: 150 VIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWYFGMCMGTFVTL 209
FF +LY++A+G+GGHKPCV F ADQF + E K+SFFN+WY + + + + +
Sbjct: 116 --VFFMALYVMAVGEGGHKPCVMTFAADQFGEANAEEKAAKTSFFNYWYMAIVLASSIAV 173
Query: 210 TVLNYIQDNLNWILGFGIPCILMVIALVVFLLGTKIYRYSLKGEEKSPFLRIGQVFVTAV 269
L +IQ+ ++W LGF I +VIA+V+FL+G YR + SPF R+ QV V A+
Sbjct: 174 LALIFIQERVSWSLGFSIIAGSVVIAIVIFLIGIPKYRKQVP--VGSPFTRVAQVMVAAL 231
Query: 270 RNWRITPS----AIALEEEARGTLPHQSSEQ---------FKFLNKALLAS----NGSKG 312
+ WR++ + + EEE L +S Q F+FL+KA + N ++
Sbjct: 232 KKWRLSSTRHHYGLCYEEEDEHKLESTNSNQVYLLARTNQFRFLDKATIIDEIDHNKNRN 291
Query: 313 YGKVCSVGEVEEAKALLRLVPIWTTCLVYAIVFAQSSTFFTKQGVTMDRSVVADFQIPAA 372
++C+V +VEE K +LRL+PIW + +++ Q +TFF KQG MDR++ F IP A
Sbjct: 292 PWRLCTVNQVEEVKLILRLIPIWISLIMFCATLTQLNTFFLKQGSMMDRTIGNHFTIPPA 351
Query: 373 SLQSFISLAIVLTIPIYDRIFVPIARTFTRKPAGITMLQRIGTGMFLSAASMTGATLVEM 432
+ QS + + I++ IP+YDR+FVP+ R T +GIT LQRIG G+F++ +M LVE
Sbjct: 352 AFQSIVGVTILILIPLYDRVFVPMVRKITNHHSGITSLQRIGVGLFVATFNMVICGLVEA 411
Query: 433 KRLKTAEEYGLVDKPNVTIPMSVWWLIPQYALLGVSEAFTMVGLQEFFYDQVPTELRSVG 492
KRLK A ++GL+D P +PMS WL+PQY L+G+ + FT+VG+QE FYDQ+P +RS+G
Sbjct: 412 KRLKVARDHGLIDSPKEVVPMSSLWLLPQYILVGIGDVFTIVGMQELFYDQMPETMRSIG 471
Query: 493 LSLYLSIFGVGSFLSSFLISAIENATGGDGRD 524
++++S+ GVGSF+S+ +IS ++ + G +
Sbjct: 472 AAIFISVVGVGSFVSTGIISTVQTISKSHGEE 503
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M390|PTR1_ARATH Peptide transporter PTR1 OS=Arabidopsis thaliana GN=PTR1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 408 bits (1048), Expect = e-113, Method: Compositional matrix adjust.
Identities = 218/525 (41%), Positives = 309/525 (58%), Gaps = 21/525 (4%)
Query: 15 EDDVV--DGCVDYKGRPVNNRSKYGGWRSALFIIGVEMAERFAYYGVSSNLITYLTGPLA 72
E DV DG VD P N + K G W++ FI+G E ER AYYG+ +NL+ YL L
Sbjct: 3 EKDVYTQDGTVDIHKNPAN-KEKTGNWKACRFILGNECCERLAYYGMGTNLVNYLESRLN 61
Query: 73 QSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVLGLGLLTLSAVLLS 132
Q ATAA NV WSG + PL GAF+AD++LGRY I IYV G+ LLTLSA +
Sbjct: 62 QGNATAANNVTNWSGTCYITPLIGAFIADAYLGRYWTIATFVFIYVSGMTLLTLSASVPG 121
Query: 133 GSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSS 192
C +C N Q FF +LY+IALG GG KPCV +FGADQFD E KSS
Sbjct: 122 LKPGNCNADTCHPNSSQTAVFFVALYMIALGTGGIKPCVSSFGADQFDENDENEKIKKSS 181
Query: 193 FFNWWYFGMCMGTFVTLTVLNYIQDNLNWILGFGIPCILMVIALVVFLLGTKIYRYSLKG 252
FFNW+YF + +G + TVL +IQ N+ W GFG+P + MVIA+ F G++ YR G
Sbjct: 182 FFNWFYFSINVGALIAATVLVWIQMNVGWGWGFGVPTVAMVIAVCFFFFGSRFYRLQRPG 241
Query: 253 EEKSPFLRIGQVFVTAVRNWRI-TPSAIAL-------EEEARGTLPHQSSEQFKFLNKAL 304
SP RI QV V A R + P +L E +G+ ++ KF +KA
Sbjct: 242 --GSPLTRIFQVIVAAFRKISVKVPEDKSLLFETADDESNIKGSRKLVHTDNLKFFDKAA 299
Query: 305 LAS------NGSKGYGKVCSVGEVEEAKALLRLVPIWTTCLVYAIVFAQSSTFFTKQGVT 358
+ S +G ++CSV +VEE K+++ L+P+W T +V+A V++Q ST F QG T
Sbjct: 300 VESQSDSIKDGEVNPWRLCSVTQVEELKSIITLLPVWATGIVFATVYSQMSTMFVLQGNT 359
Query: 359 MDRSVVADFQIPAASLQSFISLAIVLTIPIYDRIFVPIARTFTRKPAGITMLQRIGTGMF 418
MD+ + +F+IP+ASL F +++++ P+YD+ +P+AR FTR G T LQR+G G+
Sbjct: 360 MDQHMGKNFEIPSASLSLFDTVSVLFWTPVYDQFIIPLARKFTRNERGFTQLQRMGIGLV 419
Query: 419 LSAASMTGATLVEMKRLKTAEEYGLVDKPNVTIPMSVWWLIPQYALLGVSEAFTMVGLQE 478
+S +M A ++E+ RL + + D+ I MS++W IPQY L+G +E FT +G E
Sbjct: 420 VSIFAMITAGVLEVVRLDYVKTHNAYDQKQ--IHMSIFWQIPQYLLIGCAEVFTFIGQLE 477
Query: 479 FFYDQVPTELRSVGLSLYLSIFGVGSFLSSFLISAIENATGGDGR 523
FFYDQ P +RS+ +L L+ +G++LS+ L++ + T +G+
Sbjct: 478 FFYDQAPDAMRSLCSALSLTTVALGNYLSTVLVTVVMKITKKNGK 522
|
Peptide transporter. Mediates the transport of di- and tripeptides. High affinity transporter with low selectivity. No transport of amino acids. Arabidopsis thaliana (taxid: 3702) |
| >sp|P0CI03|PTR28_ARATH Putative peptide/nitrate transporter At2g37900 OS=Arabidopsis thaliana GN=At2g37900 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 405 bits (1042), Expect = e-112, Method: Compositional matrix adjust.
Identities = 216/541 (39%), Positives = 329/541 (60%), Gaps = 36/541 (6%)
Query: 4 SEVLEAERPLVEDDVVDGCVDYKGRPVNNRSKYGGWRSALFIIGVEMAERFAYYGVSSNL 63
+EVL+ + V+D +D +GR V R++ G WR+ALFII +E +ER +Y+G+++NL
Sbjct: 8 AEVLQDTYDDQQKWVLDSSLDSRGR-VPLRARTGAWRAALFIIAIEFSERLSYFGLATNL 66
Query: 64 ITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVLGLGL 123
+ YLT L Q A NVN WSGV +L+PL G F+AD++LGRY +++A+ IY++GL L
Sbjct: 67 VVYLTTILNQDLKMAIRNVNYWSGVTTLMPLLGGFIADAYLGRYATVLVATTIYLMGLVL 126
Query: 124 LTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQH 183
LT+S + G Q + + FF ++YLI++G GGHKP +++FGADQFD H
Sbjct: 127 LTMSW-FIPGLKPCHQEVCVEPRKAHEVAFFIAIYLISIGTGGHKPSLESFGADQFDDDH 185
Query: 184 PLESKLKSSFFNWWYFGMCMGTFVTLTVLNYIQDNLNWILGFGIPCILMVIALVVFLLGT 243
E K+K SFFNWW +C G +T + YI+D + W + I ++M I+L++F +G
Sbjct: 186 VEERKMKMSFFNWWNVSLCAGILTAVTAVAYIEDRVGWGVAGIILTVVMAISLIIFFIGK 245
Query: 244 KIYRYSLKGEEKSPFLRIGQVFVTAVRNWRIT-PSAIALEEEARGT-------LPHQSSE 295
YRY + SP I QVFV A+ + PS +L E T L H +E
Sbjct: 246 PFYRY--RTPSGSPLTPILQVFVAAIAKRNLPYPSDPSLLHEVSKTEFTSGRLLCH--TE 301
Query: 296 QFKFLNKALLASNGS------KGYGKVCSVGEVEEAKALLRLVPIWTTCLVYAIVFAQSS 349
KFL+KA + + + + ++ ++ +VEE K ++ ++PIW + L + I Q+S
Sbjct: 302 HLKFLDKAAIIEDKNPLALEKQSPWRLLTLTKVEETKLIINVIPIWFSTLAFGICATQAS 361
Query: 350 TFFTKQGVTMDRSVVADFQIPAASLQSFISLAIVLTIPIYDRIFVPIARTFTRKPAGITM 409
TFF KQ +TMDR + F +P AS+ + +L +++++ +Y+++ VP+ R+ TR GI +
Sbjct: 362 TFFIKQAITMDRH-IGGFTVPPASMFTLTALTLIISLTVYEKLLVPLLRSITRNQRGINI 420
Query: 410 LQRIGTGMFLSAASMTGATLVEMKRLKTAEEYGLVDKPNVTIPMSVWWLIPQYALLGVSE 469
LQRIGTGM S +M A LVE +RL D+ N PMSV WL PQ+ ++G ++
Sbjct: 421 LQRIGTGMIFSLITMIIAALVEKQRL---------DRTNNNKPMSVIWLAPQFMVIGFAD 471
Query: 470 AFTMVGLQEFFYDQVPTELRSVGLSLYLSIFGVGSFLSSFLISAI----ENATGGD--GR 523
AFT+VGLQE+FY QVP +RS+G++ YLS+ G SFL++ LI+A+ EN +G G+
Sbjct: 472 AFTLVGLQEYFYHQVPDSMRSLGIAFYLSVIGAASFLNNLLITAVDTLAENFSGKSWFGK 531
Query: 524 D 524
D
Sbjct: 532 D 532
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 525 | ||||||
| 359493461 | 1115 | PREDICTED: uncharacterized protein LOC10 | 0.979 | 0.460 | 0.748 | 0.0 | |
| 359493466 | 572 | PREDICTED: probable peptide/nitrate tran | 0.979 | 0.898 | 0.715 | 0.0 | |
| 296089515 | 755 | unnamed protein product [Vitis vinifera] | 0.979 | 0.680 | 0.715 | 0.0 | |
| 147836333 | 584 | hypothetical protein VITISV_011767 [Viti | 0.979 | 0.880 | 0.701 | 0.0 | |
| 359493470 | 572 | PREDICTED: LOW QUALITY PROTEIN: probable | 0.979 | 0.898 | 0.726 | 0.0 | |
| 147826923 | 572 | hypothetical protein VITISV_000973 [Viti | 0.979 | 0.898 | 0.726 | 0.0 | |
| 449451992 | 1122 | PREDICTED: LOW QUALITY PROTEIN: uncharac | 0.979 | 0.458 | 0.698 | 0.0 | |
| 296089506 | 2163 | unnamed protein product [Vitis vinifera] | 0.939 | 0.227 | 0.756 | 0.0 | |
| 296089516 | 687 | unnamed protein product [Vitis vinifera] | 0.980 | 0.749 | 0.717 | 0.0 | |
| 356509487 | 563 | PREDICTED: probable peptide/nitrate tran | 0.982 | 0.916 | 0.699 | 0.0 |
| >gi|359493461|ref|XP_002265921.2| PREDICTED: uncharacterized protein LOC100249450 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 767 bits (1980), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 389/520 (74%), Positives = 435/520 (83%), Gaps = 6/520 (1%)
Query: 10 ERPLVEDDVVDGCVDYKGRPVNNRSKYGGWRSALFIIGVEMAERFAYYGVSSNLITYLTG 69
E PL+ DD VDG D+KGRP RS GGWRSA FIIGVE+AERFAYYG+ SNLI++L G
Sbjct: 11 ETPLL-DDTVDGFADHKGRPAR-RSSSGGWRSASFIIGVEVAERFAYYGIGSNLISFLIG 68
Query: 70 PLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVLGLGLLTLSAV 129
PL QSTA AA NVN WSG ++LLPL GAF+AD++LGRY II+ASLIY+LGLGLL +SAV
Sbjct: 69 PLGQSTAAAAANVNTWSGTSTLLPLLGAFVADTYLGRYYTIIVASLIYILGLGLLAVSAV 128
Query: 130 LLSGSTSECQNT----SCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPL 185
L S S SECQ SCS Q QVI FFF+LYL+A+GQGGHKPCVQAFGADQFD Q P+
Sbjct: 129 LPSASPSECQKNDEIASCSPPQLQVILFFFALYLVAVGQGGHKPCVQAFGADQFDGQDPV 188
Query: 186 ESKLKSSFFNWWYFGMCMGTFVTLTVLNYIQDNLNWILGFGIPCILMVIALVVFLLGTKI 245
E K KSSFFNWWYF MC GT +TL +LNYIQDNLNW LGFGIPCI MVIAL+VFLLGTK
Sbjct: 189 EGKSKSSFFNWWYFSMCFGTLITLFILNYIQDNLNWGLGFGIPCIAMVIALLVFLLGTKT 248
Query: 246 YRYSLKGEEKSPFLRIGQVFVTAVRNWRITPSAIALEEEARGTLPHQSSEQFKFLNKALL 305
YRYS+ G+EKSPF+RIGQVFV A RNWR T S++ EE ARGTLPHQ S QF+FLNKALL
Sbjct: 249 YRYSVNGDEKSPFVRIGQVFVAAARNWRTTDSSLNFEEVARGTLPHQGSLQFRFLNKALL 308
Query: 306 ASNGSKGYGKVCSVGEVEEAKALLRLVPIWTTCLVYAIVFAQSSTFFTKQGVTMDRSVVA 365
A +GSK GKVCSV +VEEAKA+LRL PIW TCL YAIVFAQSSTFFTKQG+TMDRS+ +
Sbjct: 309 APDGSKDNGKVCSVSDVEEAKAVLRLFPIWATCLAYAIVFAQSSTFFTKQGITMDRSLGS 368
Query: 366 DFQIPAASLQSFISLAIVLTIPIYDRIFVPIARTFTRKPAGITMLQRIGTGMFLSAASMT 425
F IPAASLQSFI+LAI++ IPIYDRIFVPIAR+ TRKP+GITMLQRIGTG+FLS SM
Sbjct: 369 GFVIPAASLQSFITLAIIIFIPIYDRIFVPIARSLTRKPSGITMLQRIGTGIFLSCISMV 428
Query: 426 GATLVEMKRLKTAEEYGLVDKPNVTIPMSVWWLIPQYALLGVSEAFTMVGLQEFFYDQVP 485
A LVEMKRLKTAEEYGL+D P VT+PMSV WLIPQY L GVS+ FTMVGLQEFFYDQVP
Sbjct: 429 IAALVEMKRLKTAEEYGLIDMPKVTVPMSVCWLIPQYILFGVSDVFTMVGLQEFFYDQVP 488
Query: 486 TELRSVGLSLYLSIFGVGSFLSSFLISAIENATGGDGRDS 525
ELRSVGL+LYLSIFGVG+FLSSFLIS I+ T GDG+ S
Sbjct: 489 NELRSVGLALYLSIFGVGNFLSSFLISVIDKTTNGDGQGS 528
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359493466|ref|XP_003634604.1| PREDICTED: probable peptide/nitrate transporter At1g22540-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 763 bits (1969), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 372/520 (71%), Positives = 428/520 (82%), Gaps = 6/520 (1%)
Query: 10 ERPLVEDDVVDGCVDYKGRPVNNRSKYGGWRSALFIIGVEMAERFAYYGVSSNLITYLTG 69
E PL+ED +VDG D+KGRP RS G WRSA FIIGVE+AERFAY G+ +NLI YLTG
Sbjct: 11 ESPLLED-IVDGYTDHKGRPAR-RSTSGCWRSAYFIIGVEVAERFAYSGIQANLINYLTG 68
Query: 70 PLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVLGLGLLTLSAV 129
L S ATAAENVN WSG LLPL GAF+ADS+LGRYR IIIAS +Y+LGLGLLTLSAV
Sbjct: 69 RLGLSMATAAENVNTWSGTGGLLPLVGAFVADSYLGRYRTIIIASFLYILGLGLLTLSAV 128
Query: 130 LLSGSTSECQN----TSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPL 185
L S S S+CQ TSCS Q Q+I FFFSLYL+A+GQGGHKPC QAFGADQFD ++P
Sbjct: 129 LPSPSPSDCQKSNQITSCSPPQLQIILFFFSLYLVAVGQGGHKPCNQAFGADQFDGRNPE 188
Query: 186 ESKLKSSFFNWWYFGMCMGTFVTLTVLNYIQDNLNWILGFGIPCILMVIALVVFLLGTKI 245
E K KSSFFNWWYFG+C GT + +VL+YIQ+NLNW LGFGIPC++M+ AL++FLLGT+
Sbjct: 189 ECKAKSSFFNWWYFGLCFGTVINYSVLSYIQENLNWGLGFGIPCVVMIAALLLFLLGTRT 248
Query: 246 YRYSLKGEEKSPFLRIGQVFVTAVRNWRITPSAIALEEEARGTLPHQSSEQFKFLNKALL 305
YRYS+K +EKSPF+RIG+VF+ A +NWR PS +A EE AR HQ S+QFK LNKALL
Sbjct: 249 YRYSVKTDEKSPFVRIGKVFIAAAKNWRTMPSLVATEELAREAPHHQVSQQFKCLNKALL 308
Query: 306 ASNGSKGYGKVCSVGEVEEAKALLRLVPIWTTCLVYAIVFAQSSTFFTKQGVTMDRSVVA 365
A +GSKG G+ C++ VEEAKA+LRL PIWTTCLVYAI FAQSSTFFTKQG+TMDRS+
Sbjct: 309 APDGSKGNGRQCTIDNVEEAKAVLRLFPIWTTCLVYAIAFAQSSTFFTKQGITMDRSIGW 368
Query: 366 DFQIPAASLQSFISLAIVLTIPIYDRIFVPIARTFTRKPAGITMLQRIGTGMFLSAASMT 425
IPA+SLQ FI L+IVL +PIYDRI VPIART TRKP+GITMLQRIGTGMFLSA SM
Sbjct: 369 GIDIPASSLQGFIGLSIVLIVPIYDRILVPIARTLTRKPSGITMLQRIGTGMFLSAISMV 428
Query: 426 GATLVEMKRLKTAEEYGLVDKPNVTIPMSVWWLIPQYALLGVSEAFTMVGLQEFFYDQVP 485
A LVEMKRLKTA+E+GLVD PNVT+PMSVWWL+PQY L GVS+ T+VGLQEFFYDQVP
Sbjct: 429 VAALVEMKRLKTAQEHGLVDMPNVTLPMSVWWLLPQYILFGVSDVVTIVGLQEFFYDQVP 488
Query: 486 TELRSVGLSLYLSIFGVGSFLSSFLISAIENATGGDGRDS 525
TELRSVG++LYLSI GVG+FLSSFLISAIE ATGGDG+ S
Sbjct: 489 TELRSVGIALYLSILGVGNFLSSFLISAIEKATGGDGQHS 528
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296089515|emb|CBI39334.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 761 bits (1965), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 372/520 (71%), Positives = 428/520 (82%), Gaps = 6/520 (1%)
Query: 10 ERPLVEDDVVDGCVDYKGRPVNNRSKYGGWRSALFIIGVEMAERFAYYGVSSNLITYLTG 69
E PL+ED +VDG D+KGRP RS G WRSA FIIGVE+AERFAY G+ +NLI YLTG
Sbjct: 11 ESPLLED-IVDGYTDHKGRPAR-RSTSGCWRSAYFIIGVEVAERFAYSGIQANLINYLTG 68
Query: 70 PLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVLGLGLLTLSAV 129
L S ATAAENVN WSG LLPL GAF+ADS+LGRYR IIIAS +Y+LGLGLLTLSAV
Sbjct: 69 RLGLSMATAAENVNTWSGTGGLLPLVGAFVADSYLGRYRTIIIASFLYILGLGLLTLSAV 128
Query: 130 LLSGSTSECQN----TSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPL 185
L S S S+CQ TSCS Q Q+I FFFSLYL+A+GQGGHKPC QAFGADQFD ++P
Sbjct: 129 LPSPSPSDCQKSNQITSCSPPQLQIILFFFSLYLVAVGQGGHKPCNQAFGADQFDGRNPE 188
Query: 186 ESKLKSSFFNWWYFGMCMGTFVTLTVLNYIQDNLNWILGFGIPCILMVIALVVFLLGTKI 245
E K KSSFFNWWYFG+C GT + +VL+YIQ+NLNW LGFGIPC++M+ AL++FLLGT+
Sbjct: 189 ECKAKSSFFNWWYFGLCFGTVINYSVLSYIQENLNWGLGFGIPCVVMIAALLLFLLGTRT 248
Query: 246 YRYSLKGEEKSPFLRIGQVFVTAVRNWRITPSAIALEEEARGTLPHQSSEQFKFLNKALL 305
YRYS+K +EKSPF+RIG+VF+ A +NWR PS +A EE AR HQ S+QFK LNKALL
Sbjct: 249 YRYSVKTDEKSPFVRIGKVFIAAAKNWRTMPSLVATEELAREAPHHQVSQQFKCLNKALL 308
Query: 306 ASNGSKGYGKVCSVGEVEEAKALLRLVPIWTTCLVYAIVFAQSSTFFTKQGVTMDRSVVA 365
A +GSKG G+ C++ VEEAKA+LRL PIWTTCLVYAI FAQSSTFFTKQG+TMDRS+
Sbjct: 309 APDGSKGNGRQCTIDNVEEAKAVLRLFPIWTTCLVYAIAFAQSSTFFTKQGITMDRSIGW 368
Query: 366 DFQIPAASLQSFISLAIVLTIPIYDRIFVPIARTFTRKPAGITMLQRIGTGMFLSAASMT 425
IPA+SLQ FI L+IVL +PIYDRI VPIART TRKP+GITMLQRIGTGMFLSA SM
Sbjct: 369 GIDIPASSLQGFIGLSIVLIVPIYDRILVPIARTLTRKPSGITMLQRIGTGMFLSAISMV 428
Query: 426 GATLVEMKRLKTAEEYGLVDKPNVTIPMSVWWLIPQYALLGVSEAFTMVGLQEFFYDQVP 485
A LVEMKRLKTA+E+GLVD PNVT+PMSVWWL+PQY L GVS+ T+VGLQEFFYDQVP
Sbjct: 429 VAALVEMKRLKTAQEHGLVDMPNVTLPMSVWWLLPQYILFGVSDVVTIVGLQEFFYDQVP 488
Query: 486 TELRSVGLSLYLSIFGVGSFLSSFLISAIENATGGDGRDS 525
TELRSVG++LYLSI GVG+FLSSFLISAIE ATGGDG+ S
Sbjct: 489 TELRSVGIALYLSILGVGNFLSSFLISAIEKATGGDGQHS 528
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147836333|emb|CAN75422.1| hypothetical protein VITISV_011767 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 757 bits (1955), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/532 (70%), Positives = 430/532 (80%), Gaps = 18/532 (3%)
Query: 10 ERPLVEDDVVDGCVDYKGRPVNNRSKYGGWRSALFII------------GVEMAERFAYY 57
E PL+ED +VDG D+KGRP RS G WRSA FII GVE+AERFAY
Sbjct: 11 ESPLLED-IVDGYTDHKGRPAR-RSTSGCWRSAYFIIASSYRPRLYMXAGVEVAERFAYS 68
Query: 58 GVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIY 117
G+ +NLI YLTG L S ATAAENVN WSG LLPL GAF+ADS+LGRYR IIIAS +Y
Sbjct: 69 GIQANLINYLTGRLGLSMATAAENVNTWSGTGGLLPLVGAFVADSYLGRYRTIIIASFLY 128
Query: 118 VLGLGLLTLSAVLLSGSTSECQN----TSCSANQFQVIFFFFSLYLIALGQGGHKPCVQA 173
+LGLGLLTLSAVL S S S+CQ TSCS Q Q+I FFFSLYL+A+GQGGHKPC QA
Sbjct: 129 ILGLGLLTLSAVLPSPSPSDCQKSNQITSCSPPQLQIILFFFSLYLVAVGQGGHKPCNQA 188
Query: 174 FGADQFDSQHPLESKLKSSFFNWWYFGMCMGTFVTLTVLNYIQDNLNWILGFGIPCILMV 233
FGADQFD ++P E K KSSFFNWWYFG+C GT + +VL+YIQ+NLNW LGFGIPC++M+
Sbjct: 189 FGADQFDGRNPEECKAKSSFFNWWYFGLCFGTVINYSVLSYIQENLNWGLGFGIPCVVMI 248
Query: 234 IALVVFLLGTKIYRYSLKGEEKSPFLRIGQVFVTAVRNWRITPSAIALEEEARGTLPHQS 293
AL++FLLGT+ YRYS+K +EKSPF+RIG+VF+ A +NWR PS +A EE AR HQ
Sbjct: 249 AALLLFLLGTRTYRYSVKTDEKSPFVRIGKVFIAAAKNWRTMPSLVATEELAREAPHHQX 308
Query: 294 SEQFKFLNKALLASNGSKGYGKVCSVGEVEEAKALLRLVPIWTTCLVYAIVFAQSSTFFT 353
S+QFK LNKALLA +GSKG G+ C++ +VEEAKA+LRL PIWTTCLVYAI FAQSSTFFT
Sbjct: 309 SQQFKCLNKALLAPDGSKGNGRQCTIDDVEEAKAVLRLFPIWTTCLVYAIAFAQSSTFFT 368
Query: 354 KQGVTMDRSVVADFQIPAASLQSFISLAIVLTIPIYDRIFVPIARTFTRKPAGITMLQRI 413
KQG+TMDRS+ IPA+SLQ FI L+IVL +PIYDRI VPIART TRKP+GITMLQRI
Sbjct: 369 KQGITMDRSIGWGIDIPASSLQGFIGLSIVLIVPIYDRILVPIARTLTRKPSGITMLQRI 428
Query: 414 GTGMFLSAASMTGATLVEMKRLKTAEEYGLVDKPNVTIPMSVWWLIPQYALLGVSEAFTM 473
GTGMFLSA SM A LVEMKRLKTA+E+GLVD PNVT+PMSVWWL+PQY L GVS+ FT+
Sbjct: 429 GTGMFLSAISMVVAALVEMKRLKTAQEHGLVDMPNVTLPMSVWWLLPQYILFGVSDVFTI 488
Query: 474 VGLQEFFYDQVPTELRSVGLSLYLSIFGVGSFLSSFLISAIENATGGDGRDS 525
VGLQEFFYDQVPTELRSVG++LYLSI GVG+FLSSFLISAIE ATGGDG+ S
Sbjct: 489 VGLQEFFYDQVPTELRSVGIALYLSILGVGNFLSSFLISAIEKATGGDGQHS 540
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359493470|ref|XP_003634606.1| PREDICTED: LOW QUALITY PROTEIN: probable peptide/nitrate transporter At1g22540-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 754 bits (1947), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/520 (72%), Positives = 435/520 (83%), Gaps = 6/520 (1%)
Query: 10 ERPLVEDDVVDGCVDYKGRPVNNRSKYGGWRSALFIIGVEMAERFAYYGVSSNLITYLTG 69
E PL+ED VDG D+KGRP RS GGWRSA FIIGVE+AERFAYYG+ +NLI YLTG
Sbjct: 11 ESPLLED-TVDGYTDHKGRPAR-RSTSGGWRSAYFIIGVEVAERFAYYGIQANLINYLTG 68
Query: 70 PLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVLGLGLLTLSAV 129
L QS A+AAENVN W+G SLLPL GAF+ADS+LGRYR IIIASL+Y+LGLGLLTLSAV
Sbjct: 69 RLGQSIASAAENVNTWTGTGSLLPLVGAFVADSYLGRYRTIIIASLLYILGLGLLTLSAV 128
Query: 130 LLSGSTSEC----QNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPL 185
L S S S+C Q TSCS Q Q+I FFFSLYL+A+GQGGHKPC QAFGADQFD ++P
Sbjct: 129 LPSPSPSDCKESNQITSCSPPQLQIILFFFSLYLVAVGQGGHKPCTQAFGADQFDGRNPE 188
Query: 186 ESKLKSSFFNWWYFGMCMGTFVTLTVLNYIQDNLNWILGFGIPCILMVIALVVFLLGTKI 245
E K KSSFFNWWYFG+C GT +T +VL YIQ+NLNW LGFGIPC++M+ AL++FLLGT+
Sbjct: 189 ECKAKSSFFNWWYFGLCFGTVITYSVLTYIQENLNWGLGFGIPCVVMIAALLLFLLGTRT 248
Query: 246 YRYSLKGEEKSPFLRIGQVFVTAVRNWRITPSAIALEEEARGTLPHQSSEQFKFLNKALL 305
YRYS+K +E+SPF+RIG+VF+ A +NWR PS +A EE AR HQ S+QFK LNKALL
Sbjct: 249 YRYSVKKDERSPFVRIGKVFIAAAKNWRTMPSLVATEELAREAPHHQLSQQFKCLNKALL 308
Query: 306 ASNGSKGYGKVCSVGEVEEAKALLRLVPIWTTCLVYAIVFAQSSTFFTKQGVTMDRSVVA 365
A +GSKG G+ C++ +VEEAKA+LRL PIW TCLVYAIVFAQSSTFFTKQG+TMDRS+
Sbjct: 309 APDGSKGNGRQCTIDDVEEAKAVLRLFPIWATCLVYAIVFAQSSTFFTKQGITMDRSIGW 368
Query: 366 DFQIPAASLQSFISLAIVLTIPIYDRIFVPIARTFTRKPAGITMLQRIGTGMFLSAASMT 425
IPA+SLQ+FISL+IVL +PIYDRI VPIART TRKP+GITMLQRIGTGMFLSA SM
Sbjct: 369 GIDIPASSLQAFISLSIVLIVPIYDRILVPIARTLTRKPSGITMLQRIGTGMFLSAISMV 428
Query: 426 GATLVEMKRLKTAEEYGLVDKPNVTIPMSVWWLIPQYALLGVSEAFTMVGLQEFFYDQVP 485
A LVEMKRLKTA+E+GLVD PNVT+PMSVWWL+PQY L GVS+ FTMVGLQEFFYDQVP
Sbjct: 429 VAALVEMKRLKTAQEHGLVDMPNVTLPMSVWWLLPQYILFGVSDVFTMVGLQEFFYDQVP 488
Query: 486 TELRSVGLSLYLSIFGVGSFLSSFLISAIENATGGDGRDS 525
ELRSVG++LYLSI GVGSFLSSFLISAIE ATGGDG+ S
Sbjct: 489 IELRSVGIALYLSILGVGSFLSSFLISAIEKATGGDGQHS 528
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147826923|emb|CAN71099.1| hypothetical protein VITISV_000973 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 753 bits (1945), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/520 (72%), Positives = 435/520 (83%), Gaps = 6/520 (1%)
Query: 10 ERPLVEDDVVDGCVDYKGRPVNNRSKYGGWRSALFIIGVEMAERFAYYGVSSNLITYLTG 69
E PL+ED VDG D+KGRP RS GGWRSA FIIGVE+AERFAYYG+ +NLI YLTG
Sbjct: 11 ESPLLED-TVDGYTDHKGRPAR-RSTSGGWRSAYFIIGVEVAERFAYYGIQANLINYLTG 68
Query: 70 PLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVLGLGLLTLSAV 129
L QS A+AAENVN W+G SLLPL GAF+ADS+LGRYR IIIASL+Y+LGLGLLTLSAV
Sbjct: 69 RLGQSIASAAENVNTWTGTGSLLPLVGAFVADSYLGRYRTIIIASLLYILGLGLLTLSAV 128
Query: 130 LLSGSTSEC----QNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPL 185
L S S S+C Q TSCS Q Q+I FFFSLYL+A+GQGGHKPC QAFGADQFD ++P
Sbjct: 129 LPSPSPSDCKESNQITSCSPPQLQIILFFFSLYLVAVGQGGHKPCTQAFGADQFDGRNPE 188
Query: 186 ESKLKSSFFNWWYFGMCMGTFVTLTVLNYIQDNLNWILGFGIPCILMVIALVVFLLGTKI 245
E K KSSFFNWWYFG+C GT +T +VL YIQ+NLNW LGFGIPC++M+ AL++FLLGT+
Sbjct: 189 ECKAKSSFFNWWYFGLCFGTVITYSVLXYIQENLNWGLGFGIPCVVMIAALLLFLLGTRT 248
Query: 246 YRYSLKGEEKSPFLRIGQVFVTAVRNWRITPSAIALEEEARGTLPHQSSEQFKFLNKALL 305
YRYS+K +E+SPF+RIG+VF+ A +NWR PS +A EE AR HQ S+QFK LNKALL
Sbjct: 249 YRYSVKKDERSPFVRIGKVFIAAAKNWRTMPSLVATEELAREAPHHQLSQQFKCLNKALL 308
Query: 306 ASNGSKGYGKVCSVGEVEEAKALLRLVPIWTTCLVYAIVFAQSSTFFTKQGVTMDRSVVA 365
A +GSKG G+ C++ +VEEAKA+LRL PIW TCLVYAIVFAQSSTFFTKQG+TMDRS+
Sbjct: 309 APDGSKGNGRQCTIDDVEEAKAVLRLFPIWATCLVYAIVFAQSSTFFTKQGITMDRSIGW 368
Query: 366 DFQIPAASLQSFISLAIVLTIPIYDRIFVPIARTFTRKPAGITMLQRIGTGMFLSAASMT 425
IPA+SLQ+FISL+IVL +PIYDRI VPIART TRKP+GITMLQRIGTGMFLSA SM
Sbjct: 369 GIDIPASSLQAFISLSIVLIVPIYDRILVPIARTLTRKPSGITMLQRIGTGMFLSAISMV 428
Query: 426 GATLVEMKRLKTAEEYGLVDKPNVTIPMSVWWLIPQYALLGVSEAFTMVGLQEFFYDQVP 485
A LVEMKRLKTA+E+GLVD PNVT+PMSVWWL+PQY L GVS+ FTMVGLQEFFYDQVP
Sbjct: 429 VAALVEMKRLKTAQEHGLVDMPNVTLPMSVWWLLPQYILFGVSDVFTMVGLQEFFYDQVP 488
Query: 486 TELRSVGLSLYLSIFGVGSFLSSFLISAIENATGGDGRDS 525
ELRSVG++LYLSI GVGSFLSSFLISAIE ATGGDG+ S
Sbjct: 489 IELRSVGIALYLSILGVGSFLSSFLISAIEKATGGDGQHS 528
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449451992|ref|XP_004143744.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101218147 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 752 bits (1941), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 363/520 (69%), Positives = 428/520 (82%), Gaps = 6/520 (1%)
Query: 10 ERPLVEDDVVDGCVDYKGRPVNNRSKYGGWRSALFIIGVEMAERFAYYGVSSNLITYLTG 69
E PL+ D+ V+G V Y G PV RS GGWRSA IIGVE+AERFAYYGVSSNLI +LT
Sbjct: 2 EVPLL-DETVEGAVGYNGNPVC-RSNSGGWRSASLIIGVEVAERFAYYGVSSNLINFLTD 59
Query: 70 PLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVLGLGLLTLSAV 129
L QST TAA+NVNAWSG ASLLPL GAFLADSFLGRY I+++S +Y+LGLGLLT+SA+
Sbjct: 60 QLQQSTVTAAKNVNAWSGTASLLPLLGAFLADSFLGRYWTIVLSSALYILGLGLLTMSAL 119
Query: 130 LLSGSTSECQNTS----CSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPL 185
+ S STS CQ T CS N FQVI FFFSLYL+ L QGGHKPCVQAFGADQFD QHP
Sbjct: 120 IPSPSTSACQQTEKSLPCSPNLFQVILFFFSLYLVGLAQGGHKPCVQAFGADQFDGQHPK 179
Query: 186 ESKLKSSFFNWWYFGMCMGTFVTLTVLNYIQDNLNWILGFGIPCILMVIALVVFLLGTKI 245
ES+ KSSFFNWWYFG+ + TF T+ +LNY+QDNL+W LGFGIPCI MV+ALVVFLLGT+
Sbjct: 180 ESRSKSSFFNWWYFGISLATFATVNILNYVQDNLSWSLGFGIPCIAMVLALVVFLLGTRT 239
Query: 246 YRYSLKGEEKSPFLRIGQVFVTAVRNWRITPSAIALEEEARGTLPHQSSEQFKFLNKALL 305
YR+S + +E++PF+RIG+VFVTAV+NWR+ S +A EEE RG LPH SS+Q +FL+KAL+
Sbjct: 240 YRFSNRRDEENPFVRIGRVFVTAVKNWRVNSSEMAHEEEIRGLLPHHSSKQLRFLDKALI 299
Query: 306 ASNGSKGYGKVCSVGEVEEAKALLRLVPIWTTCLVYAIVFAQSSTFFTKQGVTMDRSVVA 365
N K G+ CS+ EVEEAKA+LRLVPIW CL +AIVF+QSSTFF KQGVTMDRS+
Sbjct: 300 TPNSLKEDGRACSISEVEEAKAVLRLVPIWVACLAFAIVFSQSSTFFIKQGVTMDRSITF 359
Query: 366 DFQIPAASLQSFISLAIVLTIPIYDRIFVPIARTFTRKPAGITMLQRIGTGMFLSAASMT 425
F++P+ASLQSFISL+IV+++ IYDRI +PIAR FT KP+GITMLQRIG GM LSA SM
Sbjct: 360 GFEVPSASLQSFISLSIVISLLIYDRILIPIARNFTGKPSGITMLQRIGFGMLLSAISMV 419
Query: 426 GATLVEMKRLKTAEEYGLVDKPNVTIPMSVWWLIPQYALLGVSEAFTMVGLQEFFYDQVP 485
A LVE+KRLKTA+EYGLVD P TIP+S+WWL+PQY L GV++AFTMVGLQEFFYDQVP
Sbjct: 420 IAALVEIKRLKTAQEYGLVDMPKATIPLSIWWLVPQYVLFGVADAFTMVGLQEFFYDQVP 479
Query: 486 TELRSVGLSLYLSIFGVGSFLSSFLISAIENATGGDGRDS 525
+ LRS+GLSLYLSIFG+G+FLSSFLISAIE T GDG+ S
Sbjct: 480 SGLRSIGLSLYLSIFGIGNFLSSFLISAIEKLTSGDGKQS 519
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296089506|emb|CBI39325.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 746 bits (1926), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 376/497 (75%), Positives = 420/497 (84%), Gaps = 4/497 (0%)
Query: 33 RSKYGGWRSALFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLL 92
RS GGWRSA FIIGVE+AERFAYYG+ SNLI++L GPL QSTA AA NVN WSG ++LL
Sbjct: 570 RSSSGGWRSASFIIGVEVAERFAYYGIGSNLISFLIGPLGQSTAAAAANVNTWSGTSTLL 629
Query: 93 PLFGAFLADSFLGRYRAIIIASLIYVLGLGLLTLSAVLLSGSTSECQNT----SCSANQF 148
PL GAF+AD++LGRY II+ASLIY+LGLGLL +SAVL S S SECQ SCS Q
Sbjct: 630 PLLGAFVADTYLGRYYTIIVASLIYILGLGLLAVSAVLPSASPSECQKNDEIASCSPPQL 689
Query: 149 QVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWYFGMCMGTFVT 208
QVI FFF+LYL+A+GQGGHKPCVQAFGADQFD Q P+E K KSSFFNWWYF MC GT +T
Sbjct: 690 QVILFFFALYLVAVGQGGHKPCVQAFGADQFDGQDPVEGKSKSSFFNWWYFSMCFGTLIT 749
Query: 209 LTVLNYIQDNLNWILGFGIPCILMVIALVVFLLGTKIYRYSLKGEEKSPFLRIGQVFVTA 268
L +LNYIQDNLNW LGFGIPCI MVIAL+VFLLGTK YRYS+ G+EKSPF+RIGQVFV A
Sbjct: 750 LFILNYIQDNLNWGLGFGIPCIAMVIALLVFLLGTKTYRYSVNGDEKSPFVRIGQVFVAA 809
Query: 269 VRNWRITPSAIALEEEARGTLPHQSSEQFKFLNKALLASNGSKGYGKVCSVGEVEEAKAL 328
RNWR T S++ EE ARGTLPHQ S QF+FLNKALLA +GSK GKVCSV +VEEAKA+
Sbjct: 810 ARNWRTTDSSLNFEEVARGTLPHQGSLQFRFLNKALLAPDGSKDNGKVCSVSDVEEAKAV 869
Query: 329 LRLVPIWTTCLVYAIVFAQSSTFFTKQGVTMDRSVVADFQIPAASLQSFISLAIVLTIPI 388
LRL PIW TCL YAIVFAQSSTFFTKQG+TMDRS+ + F IPAASLQSFI+LAI++ IPI
Sbjct: 870 LRLFPIWATCLAYAIVFAQSSTFFTKQGITMDRSLGSGFVIPAASLQSFITLAIIIFIPI 929
Query: 389 YDRIFVPIARTFTRKPAGITMLQRIGTGMFLSAASMTGATLVEMKRLKTAEEYGLVDKPN 448
YDRIFVPIAR+ TRKP+GITMLQRIGTG+FLS SM A LVEMKRLKTAEEYGL+D P
Sbjct: 930 YDRIFVPIARSLTRKPSGITMLQRIGTGIFLSCISMVIAALVEMKRLKTAEEYGLIDMPK 989
Query: 449 VTIPMSVWWLIPQYALLGVSEAFTMVGLQEFFYDQVPTELRSVGLSLYLSIFGVGSFLSS 508
VT+PMSV WLIPQY L GVS+ FTMVGLQEFFYDQVP ELRSVGL+LYLSIFGVG+FLSS
Sbjct: 990 VTVPMSVCWLIPQYILFGVSDVFTMVGLQEFFYDQVPNELRSVGLALYLSIFGVGNFLSS 1049
Query: 509 FLISAIENATGGDGRDS 525
FLIS I+ T GDG+ S
Sbjct: 1050 FLISVIDKTTNGDGQGS 1066
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296089516|emb|CBI39335.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 746 bits (1925), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/527 (71%), Positives = 435/527 (82%), Gaps = 12/527 (2%)
Query: 2 AISEVLEA------ERPLVEDDVVDGCVDYKGRPVNNRSKYGGWRSALFIIGVEMAERFA 55
AIS V+ A E PL+ED VDG D+KGRP RS GGWRSA FIIGVE+AERFA
Sbjct: 140 AISMVIAARTWLGPESPLLED-TVDGYTDHKGRPAR-RSTSGGWRSAYFIIGVEVAERFA 197
Query: 56 YYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASL 115
YYG+ +NLI YLTG L QS A+AAENVN W+G SLLPL GAF+ADS+LGRYR IIIASL
Sbjct: 198 YYGIQANLINYLTGRLGQSIASAAENVNTWTGTGSLLPLVGAFVADSYLGRYRTIIIASL 257
Query: 116 IYVLGLGLLTLSAVLLSGSTSEC----QNTSCSANQFQVIFFFFSLYLIALGQGGHKPCV 171
+Y+LGLGLLTLSAVL S S S+C Q TSCS Q Q+I FFFSLYL+A+GQGGHKPC
Sbjct: 258 LYILGLGLLTLSAVLPSPSPSDCKESNQITSCSPPQLQIILFFFSLYLVAVGQGGHKPCT 317
Query: 172 QAFGADQFDSQHPLESKLKSSFFNWWYFGMCMGTFVTLTVLNYIQDNLNWILGFGIPCIL 231
QAFGADQFD ++P E K KSSFFNWWYFG+C GT +T +VL YIQ+NLNW LGFGIPC++
Sbjct: 318 QAFGADQFDGRNPEECKAKSSFFNWWYFGLCFGTVITYSVLTYIQENLNWGLGFGIPCVV 377
Query: 232 MVIALVVFLLGTKIYRYSLKGEEKSPFLRIGQVFVTAVRNWRITPSAIALEEEARGTLPH 291
M+ AL++FLLGT+ YRYS+K +E+SPF+RIG+VF+ A +NWR PS +A EE AR H
Sbjct: 378 MIAALLLFLLGTRTYRYSVKKDERSPFVRIGKVFIAAAKNWRTMPSLVATEELAREAPHH 437
Query: 292 QSSEQFKFLNKALLASNGSKGYGKVCSVGEVEEAKALLRLVPIWTTCLVYAIVFAQSSTF 351
Q S+QFK LNKALLA +GSKG G+ C++ +VEEAKA+LRL PIW TCLVYAIVFAQSSTF
Sbjct: 438 QLSQQFKCLNKALLAPDGSKGNGRQCTIDDVEEAKAVLRLFPIWATCLVYAIVFAQSSTF 497
Query: 352 FTKQGVTMDRSVVADFQIPAASLQSFISLAIVLTIPIYDRIFVPIARTFTRKPAGITMLQ 411
FTKQG+TMDRS+ IPA+SLQ+FISL+IVL +PIYDRI VPIART TRKP+GITMLQ
Sbjct: 498 FTKQGITMDRSIGWGIDIPASSLQAFISLSIVLIVPIYDRILVPIARTLTRKPSGITMLQ 557
Query: 412 RIGTGMFLSAASMTGATLVEMKRLKTAEEYGLVDKPNVTIPMSVWWLIPQYALLGVSEAF 471
RIGTGMFLSA SM A LVEMKRLKTA+E+GLVD PNVT+PMSVWWL+PQY L GVS+ F
Sbjct: 558 RIGTGMFLSAISMVVAALVEMKRLKTAQEHGLVDMPNVTLPMSVWWLLPQYILFGVSDVF 617
Query: 472 TMVGLQEFFYDQVPTELRSVGLSLYLSIFGVGSFLSSFLISAIENAT 518
TMVGLQEFFYDQVP ELRSVG++LYLSI GVGSFLSSFLISAIE AT
Sbjct: 618 TMVGLQEFFYDQVPIELRSVGIALYLSILGVGSFLSSFLISAIEKAT 664
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356509487|ref|XP_003523479.1| PREDICTED: probable peptide/nitrate transporter At1g22540-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 743 bits (1918), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 370/529 (69%), Positives = 423/529 (79%), Gaps = 13/529 (2%)
Query: 1 MAISEVL---EAERPLVEDDVVDGCVDYKGRPVNNRSKYGGWRSALFIIGVEMAERFAYY 57
MAI ++ EAE PL+ + + G V++KG PV RS GGW++A FII VE+AERFAYY
Sbjct: 1 MAIDDLCGDSEAETPLLSETLY-GVVNFKGLPVL-RSTSGGWKAAAFIITVEVAERFAYY 58
Query: 58 GVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIY 117
G++SNLI YLTGPL QST TAAENVN WSG ASLLPL GAFLADSFLGRYR I++ASLIY
Sbjct: 59 GINSNLINYLTGPLGQSTVTAAENVNLWSGTASLLPLLGAFLADSFLGRYRTIVLASLIY 118
Query: 118 VLGLGLLTLSAVL-LSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGA 176
VLGL LLT S +L ++ S E Q+IFFFFSLYL+AL QGGHKPCVQAFGA
Sbjct: 119 VLGLSLLTFSTILPVTTSDGEVARP-------QLIFFFFSLYLVALAQGGHKPCVQAFGA 171
Query: 177 DQFDSQHPLESKLKSSFFNWWYFGMCMGTFVTLTVLNYIQDNLNWILGFGIPCILMVIAL 236
DQFD P E K +SSFFNWWYF G FVTL +LNY+QDN+ W+LGFGIPCI M+ AL
Sbjct: 172 DQFDVNDPEECKARSSFFNWWYFAFSAGLFVTLFILNYVQDNVGWVLGFGIPCIAMLTAL 231
Query: 237 VVFLLGTKIYRYSLKGEEKSPFLRIGQVFVTAVRNWRITPSAIALEEEARGTLPHQSSEQ 296
V+FL+GT YR+S++ EE+ PFLRIG+VF+ AV NWRITPSA+ EEEA GTLP S+Q
Sbjct: 232 VIFLIGTWTYRFSIRREERGPFLRIGRVFIVAVNNWRITPSAVTSEEEACGTLPCHGSDQ 291
Query: 297 FKFLNKALLASNGSKGYGKVCSVGEVEEAKALLRLVPIWTTCLVYAIVFAQSSTFFTKQG 356
F FLNKAL+ASNGSK G+VCS EVEEAKA+LRLVPIW TCL++AIVFAQSSTFFTKQG
Sbjct: 292 FSFLNKALIASNGSKEEGEVCSAAEVEEAKAVLRLVPIWATCLIFAIVFAQSSTFFTKQG 351
Query: 357 VTMDRSVVADFQIPAASLQSFISLAIVLTIPIYDRIFVPIARTFTRKPAGITMLQRIGTG 416
VTMDR ++ F +P ASLQS ISL+IVL IPIYDRI VP+AR FT KP+GITMLQRIGTG
Sbjct: 352 VTMDREILPGFYVPPASLQSIISLSIVLFIPIYDRIIVPVARAFTGKPSGITMLQRIGTG 411
Query: 417 MFLSAASMTGATLVEMKRLKTAEEYGLVDKPNVTIPMSVWWLIPQYALLGVSEAFTMVGL 476
M LSA SM A VEMKRLK A + GL+D PNVTIPMS+WWL+PQYAL G+++ F MVGL
Sbjct: 412 MLLSAISMVIAAFVEMKRLKVARDCGLIDMPNVTIPMSIWWLVPQYALFGIADVFAMVGL 471
Query: 477 QEFFYDQVPTELRSVGLSLYLSIFGVGSFLSSFLISAIENATGGDGRDS 525
QEFFYDQVP ELRSVGLSLYLSIFGVGSFLS FLISAIEN TG D R S
Sbjct: 472 QEFFYDQVPQELRSVGLSLYLSIFGVGSFLSGFLISAIENVTGKDNRHS 520
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 525 | ||||||
| TAIR|locus:2009487 | 557 | AT1G22540 [Arabidopsis thalian | 0.975 | 0.919 | 0.638 | 1.4e-174 | |
| TAIR|locus:2030326 | 557 | AT1G72120 [Arabidopsis thalian | 0.965 | 0.910 | 0.551 | 6.4e-147 | |
| TAIR|locus:4515102750 | 561 | AT1G72125 [Arabidopsis thalian | 0.965 | 0.903 | 0.553 | 2.8e-146 | |
| TAIR|locus:2009542 | 565 | AT1G22570 [Arabidopsis thalian | 0.971 | 0.902 | 0.537 | 3.3e-143 | |
| TAIR|locus:2009472 | 564 | AT1G22550 [Arabidopsis thalian | 0.971 | 0.904 | 0.535 | 1.8e-142 | |
| TAIR|locus:2206991 | 555 | AT1G72140 [Arabidopsis thalian | 0.942 | 0.891 | 0.545 | 6.1e-142 | |
| TAIR|locus:2030316 | 538 | AT1G72130 [Arabidopsis thalian | 0.883 | 0.862 | 0.535 | 5e-131 | |
| TAIR|locus:1006230253 | 555 | AT3G54450 [Arabidopsis thalian | 0.912 | 0.863 | 0.416 | 7e-109 | |
| TAIR|locus:2061843 | 583 | AT2G40460 [Arabidopsis thalian | 0.940 | 0.847 | 0.406 | 3.4e-100 | |
| TAIR|locus:2161438 | 582 | PTR3 "peptide transporter 3" [ | 0.963 | 0.869 | 0.390 | 1.3e-98 |
| TAIR|locus:2009487 AT1G22540 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1696 (602.1 bits), Expect = 1.4e-174, P = 1.4e-174
Identities = 336/526 (63%), Positives = 397/526 (75%)
Query: 1 MAISEVL-EAERPLVEDDVVDGCVDYKGRPVNNRSKYGGWRSALFIIGVEMAERFAYYGV 59
M+IS + EA PL+ V VDY+ +P +S GGWRSA FIIGVE+AERFAYYG+
Sbjct: 1 MSISGAVDEAGTPLLA--VT---VDYRNKPAV-KSSSGGWRSAGFIIGVEVAERFAYYGI 54
Query: 60 SSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIXXXXXXX 119
SSNLITYLTGPL QSTA AA NVNAWSG ASLLPL GAF+ADSFLGR+R I+
Sbjct: 55 SSNLITYLTGPLGQSTAAAAANVNAWSGTASLLPLLGAFVADSFLGRFRTILAASALYIV 114
Query: 120 XXXXXXXXXXXXXXXXXECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQF 179
+SCS +FQVI FF +LYL+AL QGGHKPCVQAFGADQF
Sbjct: 115 GLGVLTLSAMIPSDCKVSNLLSSCSP-RFQVITFFSALYLVALAQGGHKPCVQAFGADQF 173
Query: 180 DSQHPLESKLKSSFFNWWYFGMCMGTFVTLTVLNYIQDNLNWILGFGIPCILMVIALVVF 239
D + P E K KSSFFNWWYFGMC GT TL VLNYIQDNL+W LGFGIPCI MV+ALVV
Sbjct: 174 DEKEPEECKAKSSFFNWWYFGMCFGTLTTLWVLNYIQDNLSWALGFGIPCIAMVVALVVL 233
Query: 240 LLGTKIYRYSLKGEEKSPFLRIGQVFVTAVRNWRITPSAIALEEEARGTLPHQSSEQFKF 299
LLGT YR+S++ E++SPF+RIG V+V AV+NW ++ +A EE G + SS+QF F
Sbjct: 234 LLGTCTYRFSIRREDQSPFVRIGNVYVAAVKNWSVSALDVAAAEERLGLVSCSSSQQFSF 293
Query: 300 LNKALLASNGSKGYGKVCSVGEVEEAKALLRLVPIWTTCLVYAIVFAQSSTFFTKQGVTM 359
LNKAL+A NGS CS+ E+EEAK++LRL PIW TCLVYA+VFAQS TFFTKQG TM
Sbjct: 294 LNKALVAKNGS------CSIDELEEAKSVLRLAPIWLTCLVYAVVFAQSPTFFTKQGATM 347
Query: 360 DRSVVADFQIPAASLQSFISLAIVLTIPIYDRIFVPIARTFTRKPAGITMLQRIGTGMFL 419
+RS+ ++I A+LQSFISL+IV+ IPIYDR+ +PIAR+FT KP GITMLQRIGTG+FL
Sbjct: 348 ERSITPGYKISPATLQSFISLSIVIFIPIYDRVLIPIARSFTHKPGGITMLQRIGTGIFL 407
Query: 420 SAASMTGATLVEMKRLKTAEEYGLVDKPNVTIPMSVWWLIPQYALLGVSEAFTMVGLQEF 479
S +M A LVEMKRLKTA +YGLVD P+ T+PMSVWWL+PQY L G+++ F MVGLQEF
Sbjct: 408 SFLAMVVAALVEMKRLKTAADYGLVDSPDATVPMSVWWLVPQYVLFGITDVFAMVGLQEF 467
Query: 480 FYDQVPTELRSVGLSLYLSIFGVGSFLSSFLISAIENATGGDGRDS 525
FYDQVP ELRSVGL+LYLSIFG+G+FLSSF+IS IE AT G+ S
Sbjct: 468 FYDQVPNELRSVGLALYLSIFGIGNFLSSFMISIIEKATSQSGQAS 513
|
|
| TAIR|locus:2030326 AT1G72120 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1435 (510.2 bits), Expect = 6.4e-147, P = 6.4e-147
Identities = 286/519 (55%), Positives = 361/519 (69%)
Query: 9 AERPLVEDDVVDGCVDYKGRPVNNRSKYGGWRSALFIIGVEMAERFAYYGVSSNLITYLT 68
+E L E+ V D VD++G RS G WR+ALFIIGVE+AERFAYYG+ SNLI+YLT
Sbjct: 5 SEISLQEEYVTDA-VDHRGLAAR-RSNTGRWRAALFIIGVEVAERFAYYGIGSNLISYLT 62
Query: 69 GPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIXXXXXXXXXXXXXXXX 128
GPL +STA AA NVNAWSG+A+LLP+ GAF+AD+FLGRYR III
Sbjct: 63 GPLGESTAVAAANVNAWSGIATLLPVLGAFVADAFLGRYRTIIISSLIYVLGLAFLTLSA 122
Query: 129 XXXXXXXXECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESK 188
+TS N + FFFSLYL+A+GQ GHKPCVQAFGADQFD + E
Sbjct: 123 FLIPNTTEVTSSTSSFLN----VLFFFSLYLVAIGQSGHKPCVQAFGADQFDEKDSQEKS 178
Query: 189 LKSSFFNWWYFGMCMGTFVTLTVLNYIQDNLNWILGFGIPCILMVIALVVFLLGTKIYRY 248
+SSFFNWWY + G + V+ YIQ+ +W GFGIPC+ MVI+LV+F+ G +IYRY
Sbjct: 179 DRSSFFNWWYLSLSAGICFAILVVVYIQEEFSWAFGFGIPCVFMVISLVLFVSGRRIYRY 238
Query: 249 SLKG--EEKSPFLRIGQVFVTAVRNWRITPSAIALEEEARGTLPHQSSEQFKFLNKALLA 306
S + EE +PF RIG+VF A++N R++ S + E T P + S F NKALL
Sbjct: 239 SKRRHEEEINPFTRIGRVFFVALKNQRLSSSDLCKVELEANTSPEKQS----FFNKALLV 294
Query: 307 SNGSKGYGKVCSVGEVEEAKALLRLVPIWTTCLVYAIVFAQSSTFFTKQGVTMDRSVVAD 366
N S +VE+A AL+RL+P+W T L YAI +AQ TFFTKQGVTMDR+++
Sbjct: 295 PNDSSQGENASKSSDVEDATALIRLIPVWFTTLAYAIPYAQYMTFFTKQGVTMDRTILPG 354
Query: 367 FQIPAASLQSFISLAIVLTIPIYDRIFVPIARTFTRKPAGITMLQRIGTGMFLSAASMTG 426
+IP ASLQ FI ++IVL +PIYDR+FVPIAR T++P GIT L+RIGTG+ LS +M
Sbjct: 355 VKIPPASLQVFIGISIVLFVPIYDRVFVPIARLITKEPCGITTLKRIGTGIVLSTITMVI 414
Query: 427 ATLVEMKRLKTAEEYGLVDKPNVTIPMSVWWLIPQYALLGVSEAFTMVGLQEFFYDQVPT 486
A LVE KRL+TA+E+GL+D+P T+PMS+WWLIPQY LLG+++ +T+VG+QEFFY QVPT
Sbjct: 415 AALVEFKRLETAKEHGLIDQPEATLPMSIWWLIPQYLLLGLADVYTLVGMQEFFYSQVPT 474
Query: 487 ELRSVGLSLYLSIFGVGSFLSSFLISAIENATGGDGRDS 525
ELRS+GL+LYLS GVGS LSS LIS I+ ATGGD +S
Sbjct: 475 ELRSIGLALYLSALGVGSLLSSLLISLIDLATGGDAGNS 513
|
|
| TAIR|locus:4515102750 AT1G72125 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1429 (508.1 bits), Expect = 2.8e-146, P = 2.8e-146
Identities = 285/515 (55%), Positives = 360/515 (69%)
Query: 13 LVEDDVVDGCVDYKGRPVNNRSKYGGWRSALFIIGVEMAERFAYYGVSSNLITYLTGPLA 72
L E+ V+D VD++G RS G WR+A FIIGVE+AERFA YG+ SNLI+YLTGPL
Sbjct: 9 LQEEYVIDA-VDHRGFSAR-RSITGRWRAAWFIIGVEVAERFANYGIGSNLISYLTGPLG 66
Query: 73 QSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIXXXXXXXXXXXXXXXXXXXX 132
QSTA AA NVNAWSG++++LPL GAF+AD+FLGRY III
Sbjct: 67 QSTAVAAANVNAWSGISTILPLLGAFVADAFLGRYITIIIASFIYVLGLAFLTLSAFLIP 126
Query: 133 XXXXECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSS 192
+ TS S + F FFFSLYL+A+GQ GHKPCVQAFGADQFD ++P E+ +SS
Sbjct: 127 NNT---EVTS-SPSSFLNALFFFSLYLVAIGQSGHKPCVQAFGADQFDEKNPQENSDRSS 182
Query: 193 FFNWWYFGMCMGTFVTLTVLNYIQDNLNWILGFGIPCILMVIALVVFLLGTKIYRYSL-- 250
FFNWWY MC G + + V+ YIQ+N++W LGFGIPC+ MVI+LV+F+LG K YR+S
Sbjct: 183 FFNWWYLSMCAGIGLAILVVVYIQENVSWALGFGIPCVFMVISLVLFVLGRKSYRFSKTR 242
Query: 251 KGEEKSPFLRIGQVFVTAVRNWRITPSAIALEEEARGTLPHQSSEQFKFLNKALLASNGS 310
+ EE +PF RIG+VF A +N R+ S + E +S E+ FLNKALL N S
Sbjct: 243 QEEETNPFTRIGRVFFVAFKNQRLNSSDLCKVELIEANRSQESPEELSFLNKALLVPNDS 302
Query: 311 KGYGKVCSVGEVEEAKALLRLVPIWTTCLVYAIVFAQSSTFFTKQGVTMDRSVVADFQIP 370
C +VE+A AL+RL+P+W T L YAI FAQ TFFTKQGVTM+R++ +IP
Sbjct: 303 DEGEVACKSRDVEDATALVRLIPVWLTTLAYAIPFAQYMTFFTKQGVTMERTIFPGVEIP 362
Query: 371 AASLQSFISLAIVLTIPIYDRIFVPIARTFTRKPAGITMLQRIGTGMFLSAASMTGATLV 430
ASLQ IS++IVL +PIYDR+ VPI R+ T+ P GIT L+RIGTGM L+ +M A LV
Sbjct: 363 PASLQVLISISIVLFVPIYDRVLVPIGRSITKDPCGITTLKRIGTGMVLATLTMVVAALV 422
Query: 431 EMKRLKTAEEYGLVDKPNVTIPMSVWWLIPQYALLGVSEAFTMVGLQEFFYDQVPTELRS 490
E KRL+TA+EYGL+D+P T+PMS+WWL PQY LLG+++ T+VG+QEFFY QVPTELRS
Sbjct: 423 ESKRLETAKEYGLIDQPKTTLPMSIWWLFPQYMLLGLADVHTLVGMQEFFYSQVPTELRS 482
Query: 491 VGLSLYLSIFGVGSFLSSFLISAIENATGGDGRDS 525
+GL++YLS GVGS LSS LI I+ ATGGD +S
Sbjct: 483 LGLAIYLSAMGVGSLLSSLLIYLIDLATGGDAGNS 517
|
|
| TAIR|locus:2009542 AT1G22570 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1400 (497.9 bits), Expect = 3.3e-143, P = 3.3e-143
Identities = 284/528 (53%), Positives = 370/528 (70%)
Query: 5 EVLEAERPLVEDDVVDGCVDYKGRPVNNRSKYGGWRSALFIIGVEMAERFAYYGVSSNLI 64
++ E E L+ED V D VD++G P +S GGWRSA FIIGVE+AERFAY+G++ NLI
Sbjct: 2 KIPEEEVALLEDYVSDS-VDHRGFPAG-KSSTGGWRSAWFIIGVEVAERFAYFGIACNLI 59
Query: 65 TYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIXXXXXXXXXXXX 124
TYLTGPL QSTA AA NVN WSG AS+LP+ GAF+AD++LGRYR I++
Sbjct: 60 TYLTGPLGQSTAKAAVNVNTWSGTASILPILGAFVADAYLGRYRTIVVASLIYILGLGLL 119
Query: 125 XXXXXXXXXXXXECQNTSCSANQFQV-IFFFFSLYLIALGQGGHKPCVQAFGADQFDSQH 183
+ +N + + V FF SLYL+A+GQGGHKPCVQAFGADQFD++
Sbjct: 120 TLSASLIIMGLSKQRNDASAKPSIWVNTLFFCSLYLVAIGQGGHKPCVQAFGADQFDAED 179
Query: 184 PLESKLKSSFFNWWYFGMCMGTFVTLTVLNYIQDNLNWILGFGIPCILMVIALVVFLLGT 243
P E + SFFNWW+ + G +++ V+ Y+Q+N+NW GFGIPC+ MV+AL +FLLG
Sbjct: 180 PKEVIARGSFFNWWFLSLSAGISISIIVVAYVQENVNWAFGFGIPCLFMVMALAIFLLGR 239
Query: 244 KIYRYSLKG--EE---KSPFLRIGQVFVTAVRNWRITPSAIALEEEARGTLPHQSSEQFK 298
KIYRY KG EE + F RIG+VFV A +N ++ +LE + +G L SE+ K
Sbjct: 240 KIYRYP-KGHHEEVNSSNTFARIGRVFVIAFKNRKLRLEHSSLELD-QGLLEDGQSEKRK 297
Query: 299 ----FLNKALLASNGSKGYGKVCSVGEVEEAKALLRLVPIWTTCLVYAIVFAQSSTFFTK 354
FL KA+++ G + CS +V++AKAL+RL+PIW T +V I +AQ TFFTK
Sbjct: 298 DRLNFLAKAMISREGVEP----CSGRDVDDAKALVRLIPIWITYVVSTIPYAQYITFFTK 353
Query: 355 QGVTMDRSVVADFQIPAASLQSFISLAIVLTIPIYDRIFVPIARTFTRKPAGITMLQRIG 414
QGVT+DR ++ +IPAASL SF+ ++I++++P+Y+R+F+PIAR T+KP GITMLQRIG
Sbjct: 354 QGVTVDRRILPGVEIPAASLLSFVGVSILISVPLYERVFLPIARKITKKPFGITMLQRIG 413
Query: 415 TGMFLSAASMTGATLVEMKRLKTAEEYGLVDKPNVTIPMSVWWLIPQYALLGVSEAFTMV 474
GM LS +M A LVE KRLK A E+GLVDKP+VT+PMS+WW +PQY LLG+ + F+MV
Sbjct: 414 AGMVLSVFNMMLAALVESKRLKIAREHGLVDKPDVTVPMSIWWFVPQYLLLGMIDLFSMV 473
Query: 475 GLQEFFYDQVPTELRSVGLSLYLSIFGVGSFLSSFLISAIENATGGDG 522
G QEFFYDQVPTELRS+GLSL LS G+ SFLS FLIS I+ ATG DG
Sbjct: 474 GTQEFFYDQVPTELRSIGLSLSLSAMGLSSFLSGFLISLIDWATGKDG 521
|
|
| TAIR|locus:2009472 AT1G22550 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1393 (495.4 bits), Expect = 1.8e-142, P = 1.8e-142
Identities = 283/528 (53%), Positives = 365/528 (69%)
Query: 6 VLEAERPLVEDDVVDGCVDYKGRPVNNRSKYGGWRSALFIIGVEMAERFAYYGVSSNLIT 65
+ E E L+ED V D VD++G P +S GGWRSA +IIGVE+ ERFAY+G+ SNLIT
Sbjct: 3 IAEEEAALIEDSVSDS-VDHRGLPAG-KSSTGGWRSAWYIIGVEVGERFAYFGIGSNLIT 60
Query: 66 YLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIXXXXXXXXXXXXX 125
YLTGPL QSTATAA NVN WSG AS+LP+ GAF+AD++LGRYR I++
Sbjct: 61 YLTGPLGQSTATAAVNVNTWSGTASILPVLGAFIADAYLGRYRTIVVASLIYILGLGLLT 120
Query: 126 XXXXXXXXXXXECQ--NTSCSANQF-QV-IFFFFSLYLIALGQGGHKPCVQAFGADQFDS 181
E + N + SA F V I FF SLYL+A+GQGGHKPCVQAFGADQFD
Sbjct: 121 LSSILILMGLSEQRQHNRNASAKPFFWVNILFFCSLYLVAIGQGGHKPCVQAFGADQFDV 180
Query: 182 QHPLESKLKSSFFNWWYFGMCMGTFVTLTVLNYIQDNLNWILGFGIPCILMVIALVVFLL 241
P E + SFFNWW+ + G +++ V+ Y+QDN+NW LGFGIPC+ MV+AL +FL
Sbjct: 181 GDPKERISRGSFFNWWFLSLSAGITLSIIVVVYVQDNVNWALGFGIPCLFMVMALALFLF 240
Query: 242 GTKIYRYSLKGEE--KSPFLRIGQVFVTAVRN--WRITPSAIALEEEARGTLPHQSSEQF 297
G K YRY E + F RIG+VF+ A +N ++T S LE G+ + Q
Sbjct: 241 GRKTYRYPRGDREGKNNAFARIGRVFLVAFKNRKLKLTHSG-QLEV---GSYK-KCKGQL 295
Query: 298 KFLNKALLASNGSKGYGKVCSVGEVEEAKALLRLVPIWTTCLVYAIVFAQSSTFFTKQGV 357
+FL KALL G + CS +VE+A AL+RL+PIW T +V I +AQ +TFFTKQGV
Sbjct: 296 EFLAKALLPGEGGV---EPCSSRDVEDAMALVRLIPIWITSVVSTIPYAQYATFFTKQGV 352
Query: 358 TMDRSVVADFQIPAASLQSFISLAIVLTIPIYDRIFVPIARTFTRKPAGITMLQRIGTGM 417
T+DR ++ F+IP AS Q+ I L+I +++P Y+R+F+P+AR T+KP+GITMLQRIG GM
Sbjct: 353 TVDRKILPGFEIPPASFQALIGLSIFISVPTYERVFLPLARLITKKPSGITMLQRIGAGM 412
Query: 418 FLSAASMTGATLVEMKRLKTAEEYGLVDKPNVTIPMSVWWLIPQYALLGVSEAFTMVGLQ 477
LS+ +M A LVEMKRL+TA+E+GLVD+P+ TIPMS+WW +PQY LLG+ + F++VG Q
Sbjct: 413 VLSSLNMVVAALVEMKRLETAKEHGLVDRPDATIPMSIWWFVPQYLLLGMIDVFSLVGTQ 472
Query: 478 EFFYDQVPTELRSVGLSLYLSIFGVGSFLSSFLISAIENATGGDGRDS 525
EFFYDQVPTELRS+GL+L LS G+ SFLS FLI+ I ATG +G DS
Sbjct: 473 EFFYDQVPTELRSIGLALSLSAMGLASFLSGFLITVINWATGKNGGDS 520
|
|
| TAIR|locus:2206991 AT1G72140 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1388 (493.7 bits), Expect = 6.1e-142, P = 6.1e-142
Identities = 283/519 (54%), Positives = 363/519 (69%)
Query: 13 LVEDDVVDGCVDYKGRPVNNRSKYGGWRSALFIIGVEMAERFAYYGVSSNLITYLTGPLA 72
+V ++ V+ VD++G P + RS G W+S+ F + E+AE+FAY+G++SNLITY T L
Sbjct: 13 IVSNENVEFSVDFRGNP-SIRSSSGAWKSSGFTMCAEVAEKFAYFGIASNLITYFTEALG 71
Query: 73 QSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIXXXXXXXXXXXXXXXXXXXX 132
+STA AA NVN W G A+ LPL +ADSFLGR+R I++
Sbjct: 72 ESTAVAASNVNLWLGTAAFLPLIWGSIADSFLGRFRTILLTSSFYIMGLGLLTFSATIPS 131
Query: 133 XXXXECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSS 192
+ SC +Q +VI FF +LYLIALG+GG K C++AFGADQFD Q P ESK KSS
Sbjct: 132 LCNDQETRESC-VSQVKVIIFFCALYLIALGEGGFKVCLRAFGADQFDEQDPNESKAKSS 190
Query: 193 FFNWWYFGMCMGTFVTLTVLNYIQDNLNWILGFGIPCILMVIALVVFLLGTKIYRYSLKG 252
+FNW YF + +G T V NY+Q+NL+W LG+ IPC+ M++AL +FLLG K YR+S G
Sbjct: 191 YFNWLYFAISIGILTTRLVTNYVQENLSWALGYAIPCLSMMLALFLFLLGIKTYRFSTGG 250
Query: 253 EEK------SPFLRIGQVFVTAVRNWRITPSAIALEEEARGTLPHQSSEQFKFLNKALLA 306
E + +PF+RIG+VFV A RN R TPS L LP++S+++F+FL++A+++
Sbjct: 251 EGRQGKKHDNPFVRIGRVFVAAARNRRQTPSDTCL------LLPNESTKKFRFLDRAVIS 304
Query: 307 SNGSKGYGKVCSVGEVEEAKALLRLVPIWTTCLVYAIVFAQSSTFFTKQGVTMDRSVVAD 366
C EVEEAKA+L L+PIW LV+ IVFAQS TFFTKQG TMDRS+ +
Sbjct: 305 ----------CDSYEVEEAKAVLSLIPIWLCSLVFGIVFAQSPTFFTKQGSTMDRSISST 354
Query: 367 FQIPAASLQSFISLAIVLTIPIYDRIFVPIARTFTRKPAGITMLQRIGTGMFLSAASMTG 426
Q+PAA+LQ FISLAI++ IPIYDR+FVPIAR+ TRKPAGIT LQRI TG+FLS SM
Sbjct: 355 LQVPAATLQCFISLAILVFIPIYDRLFVPIARSITRKPAGITTLQRISTGIFLSIISMVI 414
Query: 427 ATLVEMKRLKTAEEYGLVDKPNVTIPMSVWWLIPQYALLGVSEAFTMVGLQEFFYDQVPT 486
A LVEMKRLKTA ++GLVD P T+PMSV WLIPQY L GVS+ FTMVGLQEFFY +VP
Sbjct: 415 AALVEMKRLKTARDHGLVDSPKATVPMSVCWLIPQYILFGVSDVFTMVGLQEFFYGEVPP 474
Query: 487 ELRSVGLSLYLSIFGVGSFLSSFLISAIENATGGDGRDS 525
+LRS+GL+LYLSI G+G+FLSSF++S IE AT G+ S
Sbjct: 475 QLRSMGLALYLSIIGIGNFLSSFMVSVIEEATSQSGQVS 513
|
|
| TAIR|locus:2030316 AT1G72130 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1285 (457.4 bits), Expect = 5.0e-131, P = 5.0e-131
Identities = 264/493 (53%), Positives = 338/493 (68%)
Query: 37 GGWRSALFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFG 96
GGW+SA II V+MAERFAY+G++SNLI YLTGPL +STA AA NVNAW+G + LPL G
Sbjct: 27 GGWKSARLIIVVQMAERFAYFGIASNLIMYLTGPLGESTAAAAANVNAWTGTVAFLPLLG 86
Query: 97 AFLADSFLGRYRAIIIXXXXXXXXXXXXXXXXXXXXXXXXECQNTSCSANQFQVIFFFFS 156
FLADS+LGR+R III + S +NQ Q FFFS
Sbjct: 87 GFLADSYLGRFRTIIISSSLYILGLGLLSFSTMIPS-------HQSKDSNQLQETIFFFS 139
Query: 157 LYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWYFGMCMGTFVTLTVLNYIQ 216
LYL+A+GQGG+ PC++ FGADQFD E++ KSSFFNW FG C+ T V YIQ
Sbjct: 140 LYLVAIGQGGYNPCIKVFGADQFDGNDHKEARDKSSFFNWLMFGNCISILTTRLVSTYIQ 199
Query: 217 DNLNWILGFGIPCILMVIALVVFLLGTKIYRYSLKGE-EKSPFLRIGQVFVTAVRNWRIT 275
+NL+W LGFGIP + M+++L +FLLGT YR+S + +K+PF RI +VF+ A++N R
Sbjct: 200 ENLSWSLGFGIPSVSMLLSLFLFLLGTTSYRFSTERVGKKNPFARISRVFMEALKNRR-Q 258
Query: 276 PSAIALEEEARGTL---PHQSSEQFKFLNKALLASNGSKGYGKVCSVGEVEEAKALLRLV 332
P A TL HQSS+QF+FL++A ++ C + E+EEAKA+LRL+
Sbjct: 259 PDLDIANANANETLLLLAHQSSKQFRFLDRAAIS----------CELAEIEEAKAVLRLI 308
Query: 333 PIWTTCLVYAIVFAQSSTFFTKQGVTMDRSVVADFQIPAASLQSFISLAIVLTIPIYDRI 392
PIW T +VY IV AQS TFFTKQG TMDRS+ +PAA+LQSFI+L++V+ IPIYDR+
Sbjct: 309 PIWITSVVYTIVHAQSPTFFTKQGATMDRSISPGLLVPAATLQSFINLSVVVFIPIYDRL 368
Query: 393 FVPIARTFTRKPAGITMLQRIGTGMFLSAASMTGATLVEMKRLKTAEEYGLVDKPNVTIP 452
VP AR+FT+ +GIT LQRIGTG+FLS +M A LVE KRL+ A + ++IP
Sbjct: 369 LVPFARSFTQNSSGITTLQRIGTGIFLSILAMVLAALVETKRLQAARD-------ELSIP 421
Query: 453 MSVWWLIPQYALLGVSEAFTMVGLQEFFYDQVPTELRSVGLSLYLSIFGVGSFLSSFLIS 512
MSVWWLIPQY + GVS+ FTMVGLQEFFY QVP+ELRSVG++L LSI+G G++LSSF+IS
Sbjct: 422 MSVWWLIPQYVIFGVSDMFTMVGLQEFFYGQVPSELRSVGMALNLSIYGAGNYLSSFMIS 481
Query: 513 AIENATGGDGRDS 525
I+ T G+ S
Sbjct: 482 VIDKITNQYGQRS 494
|
|
| TAIR|locus:1006230253 AT3G54450 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1076 (383.8 bits), Expect = 7.0e-109, P = 7.0e-109
Identities = 213/512 (41%), Positives = 321/512 (62%)
Query: 30 VNNRSKYGGWRSALFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVA 89
+N R+K GGW +ALFII VE+AERFA+YG++SNLIT+LT L QSTATAA+N+N W GV+
Sbjct: 8 INKRTK-GGWNAALFIIVVEIAERFAFYGLASNLITFLTNELGQSTATAAKNINTWIGVS 66
Query: 90 SLLPLFGAFLADSFLGRYRAIIIXXXXXXXXXXXXXXXXXXXXXXXXECQNTSCSANQFQ 149
+ P+ GAFLADS LGR++ +++ + + A + +
Sbjct: 67 CMFPILGAFLADSILGRFKTVLLTSFIYLLGIVMLPL-------------SVTVVARRMR 113
Query: 150 VIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWYFGMCMGTFVTL 209
FF +LY++A+G+GGHKPCV F ADQF + E K+SFFN+WY + + + + +
Sbjct: 114 EKVFFMALYVMAVGEGGHKPCVMTFAADQFGEANAEEKAAKTSFFNYWYMAIVLASSIAV 173
Query: 210 TVLNYIQDNLNWILGFGIPCILMVIALVVFLLGTKIYRYSLKGEEKSPFLRIGQVFVTAV 269
L +IQ+ ++W LGF I +VIA+V+FL+G YR + SPF R+ QV V A+
Sbjct: 174 LALIFIQERVSWSLGFSIIAGSVVIAIVIFLIGIPKYRKQVP--VGSPFTRVAQVMVAAL 231
Query: 270 RNWRITPS----AIALEEEARGTLPHQSSEQ---------FKFLNKALLAS----NGSKG 312
+ WR++ + + EEE L +S Q F+FL+KA + N ++
Sbjct: 232 KKWRLSSTRHHYGLCYEEEDEHKLESTNSNQVYLLARTNQFRFLDKATIIDEIDHNKNRN 291
Query: 313 YGKVCSVGEVEEAKALLRLVPIWTTCLVYAIVFAQSSTFFTKQGVTMDRSVVADFQIPAA 372
++C+V +VEE K +LRL+PIW + +++ Q +TFF KQG MDR++ F IP A
Sbjct: 292 PWRLCTVNQVEEVKLILRLIPIWISLIMFCATLTQLNTFFLKQGSMMDRTIGNHFTIPPA 351
Query: 373 SLQSFISLAIVLTIPIYDRIFVPIARTFTRKPAGITMLQRIGTGMFLSAASMTGATLVEM 432
+ QS + + I++ IP+YDR+FVP+ R T +GIT LQRIG G+F++ +M LVE
Sbjct: 352 AFQSIVGVTILILIPLYDRVFVPMVRKITNHHSGITSLQRIGVGLFVATFNMVICGLVEA 411
Query: 433 KRLKTAEEYGLVDKPNVTIPMSVWWLIPQYALLGVSEAFTMVGLQEFFYDQVPTELRSVG 492
KRLK A ++GL+D P +PMS WL+PQY L+G+ + FT+VG+QE FYDQ+P +RS+G
Sbjct: 412 KRLKVARDHGLIDSPKEVVPMSSLWLLPQYILVGIGDVFTIVGMQELFYDQMPETMRSIG 471
Query: 493 LSLYLSIFGVGSFLSSFLISAIENATGGDGRD 524
++++S+ GVGSF+S+ +IS ++ + G +
Sbjct: 472 AAIFISVVGVGSFVSTGIISTVQTISKSHGEE 503
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| TAIR|locus:2061843 AT2G40460 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 994 (355.0 bits), Expect = 3.4e-100, P = 3.4e-100
Identities = 210/516 (40%), Positives = 316/516 (61%)
Query: 20 DGCVDYKGRPVNNRSKYGGWRSALFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAA 79
DG VD +GRPV SK G WR+ F++G E ER A+YG++SNL+ YLT L + T ++
Sbjct: 10 DGTVDLQGRPVL-ASKTGRWRACSFLLGYEAFERMAFYGIASNLVNYLTKRLHEDTISSV 68
Query: 80 ENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIXXXXXXXXXXXXXXXXXXXXXXXXECQ 139
NVN WSG + P+ GA++ADS++GR+ C+
Sbjct: 69 RNVNNWSGAVWITPIAGAYIADSYIGRFWTFTASSLIYVLGMILLTMAVTVKSLRPT-CE 127
Query: 140 NTSCS-ANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWY 198
N C+ A+ QV FF+ SLY IA+G GG KP + FGADQFDS E K K SFFNWW
Sbjct: 128 NGVCNKASSLQVTFFYISLYTIAIGAGGTKPNISTFGADQFDSYSIEEKKQKVSFFNWWM 187
Query: 199 FGMCMGT-FVTLTVLNYIQDNLNWILGFGIPCILMVIALVVFLLGTKIYRYS-LKGEEKS 256
F +G F TL ++ YIQ+NL W LG+GIP + ++++LVVF +GT YR+ +K + +
Sbjct: 188 FSSFLGALFATLGLV-YIQENLGWGLGYGIPTVGLLVSLVVFYIGTPFYRHKVIKTDNLA 246
Query: 257 PFLRIGQVFVTAVRNWRIT-PSA-IALEE------EARGTLPHQSSEQFKFLNKALLASN 308
L QV + A +N ++ P + L E ++ G + F+FL+KA + ++
Sbjct: 247 KDLV--QVPIAAFKNRKLQCPDDHLELYELDSHYYKSNGKHQVHHTPVFRFLDKAAIKTS 304
Query: 309 GSKGYGKVCSVGEVEEAKALLRLVPIWTTCLVYAIVFAQSSTFFTKQGVTMDRSVVADFQ 368
C+V +VE AK +L L+ IW L+ + ++AQ +T F KQG T+DR + ++FQ
Sbjct: 305 SRVP----CTVTKVEVAKRVLGLIFIWLVTLIPSTLWAQVNTLFVKQGTTLDRKIGSNFQ 360
Query: 369 IPAASLQSFISLAIVLTIPIYDRIFVPIARTFTRKPAGITMLQRIGTGMFLSAASMTGAT 428
IPAASL SF++L+++L++P+YD+ FVP R T P GIT+LQR+G G + ++ A+
Sbjct: 361 IPAASLGSFVTLSMLLSVPMYDQSFVPFMRKKTGNPRGITLLQRLGVGFAIQIVAIAIAS 420
Query: 429 LVEMKRLKTAEEYGLVDKPNVTIPMSVWWLIPQYALLGVSEAFTMVGLQEFFYDQVPTEL 488
VE+KR++ +E+ + P +PMS++WL+PQY+LLG+ + F +GL EFFYDQ P E+
Sbjct: 421 AVEVKRMRVIKEFHITS-PTQVVPMSIFWLLPQYSLLGIGDVFNAIGLLEFFYDQSPEEM 479
Query: 489 RSVGLSLYLSIFGVGSFLSSFLISAIENATG-GDGR 523
+S+G + + S G+G+FL+SFL++ I+ T G G+
Sbjct: 480 QSLGTTFFTSGIGLGNFLNSFLVTMIDKITSKGGGK 515
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| TAIR|locus:2161438 PTR3 "peptide transporter 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 979 (349.7 bits), Expect = 1.3e-98, P = 1.3e-98
Identities = 204/523 (39%), Positives = 301/523 (57%)
Query: 14 VEDDVV-DGCVDYKGRPVNNRSKYGGWRSALFIIGVEMAERFAYYGVSSNLITYLTGPLA 72
V DD DG VD +G PV RS G W++ F++ E+ ER AYYG+SSNL Y+T L
Sbjct: 6 VGDDYTKDGTVDLQGNPVR-RSIRGRWKACSFVVVYEVFERMAYYGISSNLFIYMTTKLH 64
Query: 73 QSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIXXXXXXXXXXXXXXXXXXXX 132
Q T ++ NV W G + L P+ GA++ D+ LGRY +I
Sbjct: 65 QGTVKSSNNVTNWVGTSWLTPILGAYVGDALLGRYITFVISCAIYFSGMMVLTLSVTIPG 124
Query: 133 XXXXECQNTS---CS-ANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESK 188
EC T+ C A+ Q+ FF +LY +A+G GG KP + GADQFD P E
Sbjct: 125 IKPPECSTTNVENCEKASVLQLAVFFGALYTLAIGTGGTKPNISTIGADQFDVFDPKEKT 184
Query: 189 LKSSFFNWWYFGMCMGTFVTLTVLNYIQDNLNWILGFGIPCILMVIALVVFLLGTKIYRY 248
K SFFNWW F + GT TVL Y+QDN+ W LG+G+P + + I++ +FLLGT YR+
Sbjct: 185 QKLSFFNWWMFSIFFGTLFANTVLVYVQDNVGWTLGYGLPTLGLAISITIFLLGTPFYRH 244
Query: 249 SLKGEEKSPFLRIGQVFVTAVR--NWRITPSAIA------LEEEARGTLPHQSSEQFKFL 300
L SPF ++ +V V + R N +T + LE E +G P + +FL
Sbjct: 245 KLP--TGSPFTKMARVIVASFRKANAPMTHDITSFHELPSLEYERKGAFPIHPTPSLRFL 302
Query: 301 NKALLASNGSKGYGKVCSVGEVEEAKALLRLVPIWTTCLVYAIVFAQSSTFFTKQGVTMD 360
++A L + G+ +C+ EVEE K +LR++P+ V +++ AQ +T F KQG T+D
Sbjct: 303 DRASLKT-GTNHKWNLCTTTEVEETKQMLRMLPVLFITFVPSMMLAQINTLFVKQGTTLD 361
Query: 361 RSVVADFQIPAASLQSFISLAIVLTIPIYDRIFVPIARTFTRKPAGITMLQRIGTGMFLS 420
R V F IP ASL F++L+++++I +YDR+FV I R FT P GIT+LQR+G G+
Sbjct: 362 RKVTGSFSIPPASLSGFVTLSMLISIVLYDRVFVKITRKFTGNPRGITLLQRMGIGLIFH 421
Query: 421 AASMTGATLVEMKRLKTAEEYGLVDKPNVTIPMSVWWLIPQYALLGVSEAFTMVGLQEFF 480
M A++ E RLK A ++GL+ + V +P++++ L+PQ+ L+G++++F V EFF
Sbjct: 422 ILIMIVASVTERYRLKVAADHGLIHQTGVKLPLTIFALLPQFVLMGMADSFLEVAKLEFF 481
Query: 481 YDQVPTELRSVGLSLYLSIFGVGSFLSSFLISAIENATGGDGR 523
YDQ P ++S+G S + +G+F+SSFL+S + T GR
Sbjct: 482 YDQAPESMKSLGTSYSTTSLAIGNFMSSFLLSTVSEITKKRGR 524
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q0WP01 | PTR9_ARATH | No assigned EC number | 0.6615 | 0.9752 | 0.9192 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | GSVIVG00001842001 | SubName- Full=Chromosome chr18 scaffold_122, whole genome shotgun sequence; (572 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 525 | |||
| pfam00854 | 372 | pfam00854, PTR2, POT family | 4e-82 | |
| COG3104 | 498 | COG3104, PTR2, Dipeptide/tripeptide permease [Amin | 6e-39 | |
| TIGR00926 | 641 | TIGR00926, 2A1704, Peptide:H+ symporter (also tran | 6e-33 | |
| TIGR00924 | 475 | TIGR00924, yjdL_sub1_fam, amino acid/peptide trans | 3e-17 | |
| PRK15462 | 493 | PRK15462, PRK15462, dipeptide/tripeptide permease | 2e-14 | |
| PRK09584 | 500 | PRK09584, tppB, putative tripeptide transporter pe | 8e-07 | |
| PRK10207 | 489 | PRK10207, PRK10207, dipeptide/tripeptide permease | 1e-05 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 5e-04 |
| >gnl|CDD|216153 pfam00854, PTR2, POT family | Back alignment and domain information |
|---|
Score = 259 bits (665), Expect = 4e-82
Identities = 123/398 (30%), Positives = 191/398 (47%), Gaps = 30/398 (7%)
Query: 107 YRAIIIASLIYVLGLGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGG 166
++ I++ S+IY +G LLTL A+ S S QV F+ LYLIALG GG
Sbjct: 1 FKTILLGSIIYAIGHVLLTLGAIPPSLSP------------VQVALFYIGLYLIALGTGG 48
Query: 167 HKPCVQAFGADQFDSQHPLESKLKSSFFNWWYFGMCMGTFVTLTVLNYIQDNLNWILGFG 226
KP V AFGADQFD + FF+W+YF + G+ + + Y+Q N+ + LGFG
Sbjct: 49 IKPNVSAFGADQFDETQD---PRRDGFFSWFYFSINAGSLIATIITPYLQQNVGYPLGFG 105
Query: 227 IPCILMVIALVVFLLGTKIYRYSLKGEEKSPFLRIGQVFVTAVRNWRITPSAIALEEEAR 286
+P + M++AL+VFLLG++ Y+ + I +
Sbjct: 106 LPAVGMLLALLVFLLGSRRYKKKAPPGGSPFTVCIAFIIT--AAGKNRKLQLPKDSHWLY 163
Query: 287 GTLPHQS----SEQFKFLNKALLASNGSKGYGKVCSVGEVEEAKALLRLVPIWTTCLVYA 342
L + S+ A++ K + G V +A+L ++PIW ++
Sbjct: 164 WALEKYNKRSISQTKVHTRVAVIFIPLPKFWALFDQQGSVWLLQAILLMLPIWAFWILPD 223
Query: 343 IVFAQSSTFFTKQGVTMDRSVVADFQIPAASLQSFISLAIVLTIPIYDRIFVPIARTFTR 402
++ Q +T +Q TMDR + F+IP AS QSF LA+++ +PI D + P+ R
Sbjct: 224 QMWTQLATLIVRQVPTMDRIIYPLFEIPPASFQSFNPLAVLILLPILDFLVYPLL----R 279
Query: 403 KPAGITMLQRIGTGMFLSAASMTGATLVEMKRLKTAEEYGLVDKPNVTIPMSVWWLIPQY 462
G+T+ QR G GMF+ + A +VE KR + A GL P T+P+ + W +P+
Sbjct: 280 LKRGLTLPQRFGLGMFILIVANFLAAIVEAKRPRYAAALGLTS-PGWTVPLFILWSLPEL 338
Query: 463 ALLGVSEAFTMVGLQEFFYDQVPTELRSVGLSLYLSIF 500
+ GV A G EF D +P+ + S+ L +
Sbjct: 339 FISGVGLA----GALEFAPDALPSSMMSLWTLLSAAAA 372
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The POT (proton-dependent oligopeptide transport) family all appear to be proton dependent transporters. Length = 372 |
| >gnl|CDD|225646 COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 148 bits (375), Expect = 6e-39
Identities = 107/467 (22%), Positives = 181/467 (38%), Gaps = 60/467 (12%)
Query: 40 RSALFIIGVEMAERFAYYGVSSNLITYLT----GPLAQSTATAAENVNAWSGVASLLPLF 95
R I VE+ ERF+YYG+ + LI YL L A +A+ + L P+
Sbjct: 21 RGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPII 80
Query: 96 GAFLADSFLGRYRAIIIASLIYVLGLGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFF 155
G +LAD LG R I++ +++ +G +L +S+V +
Sbjct: 81 GGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGP------------------GGLYI 122
Query: 156 SLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWYFGMCMGTFVTLTVLNYI 215
L LI +G G KP + + + + P + F +Y G+ +G+ + + +
Sbjct: 123 GLALIIVGTGLFKPNISSLLGELYPKDDP----RRDGGFTLFYMGINIGSLIAPIITGLL 178
Query: 216 QDNLNWILGFGIPCILMVIALVVFLLGTKIYRYSLKGEEKSPFLRIGQVFVTAVRNWRIT 275
N W +GFG+ + M+I LV+FLLG + G P F +
Sbjct: 179 AINYGWHVGFGLAAVGMIIGLVIFLLGRR--HVKGIGGVPDPNPLS---FNFLLPVLGGL 233
Query: 276 PSAIALEEEARGTLPHQSSEQFKFLNKALLASNG-SKGYGKVC--SVGEVEEAKALLRLV 332
I A TL Q F L+ S + Y S +E + LL +
Sbjct: 234 VVMILA---ALLTLLLN---QNTFSGVLLVISILIAIIYFAEAFRSPKVFDERRRLLAAI 287
Query: 333 PIWTTCLVYAIVFAQSSTFFTKQGVTM-DRSVVADFQIPAASLQSFISLAIVLTIPIYDR 391
P++ +++ ++ Q + +R + F++P A QS I+L PI
Sbjct: 288 PLFLFAVIFWALYEQMGSSLNLYADRNVNRQIFG-FEVPPAWFQSLNPFFIILFSPILAA 346
Query: 392 IFVPIARTFTRKPAGITMLQRIGTGMFLSAASMTGATLVEMKRLKTAEEYGLVDKPNVTI 451
++ + R ++P + + G+ L+ L + GLV
Sbjct: 347 LWTKLGRG-NKQP---STPIKFALGLILAGLGFLILLLAGIWF---GGPSGLV------- 392
Query: 452 PMSVWWLIPQYALLGVSEAF-TMVGLQEFFYDQVPTELRSVGLSLYL 497
SVWWL+ Y L E F + VGL P L+S ++++
Sbjct: 393 --SVWWLVLSYVLQSFGELFISPVGL-SMVTKLAPPALKSFIMAMWF 436
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Length = 498 |
| >gnl|CDD|233190 TIGR00926, 2A1704, Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Score = 132 bits (334), Expect = 6e-33
Identities = 110/399 (27%), Positives = 186/399 (46%), Gaps = 58/399 (14%)
Query: 54 FAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIA 113
F+YYG+ + L+ YL L + TA + ++ + L PL GA +ADS+LG+++ I+
Sbjct: 1 FSYYGMKTILVLYLLNFLGWNEDTATNIYHTFTYLCYLTPLIGALIADSWLGKFKTILYL 60
Query: 114 SLIYVLGLGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQA 173
SL+YV+G L +L AV G + L LIALG GG KPCV A
Sbjct: 61 SLVYVVGHALASLGAVPSLG------------HPLHDALSLVGLALIALGTGGIKPCVSA 108
Query: 174 FGADQFDSQHPLESKLKSSFFNWWYFGMCMGTFVTLTVLNYIQDNLNWI-------LGFG 226
FG DQF+ + L+ FF+++YF + G+ + + ++ ++ L FG
Sbjct: 109 FGGDQFEERQ---LSLRFRFFSFFYFAINAGSLFSTIITPILRGDVGCFGCQDCFPLAFG 165
Query: 227 IPCILMVIALVVFLLGTKIYR-YSLKGEEKSPFLRIGQVFVTAVRNWRITPSAIALEEEA 285
+P ILM +AL+VF +G+K+Y+ G S ++ + V A++ T S
Sbjct: 166 VPGILMTLALIVFSMGSKMYKKKPPVGNIVS---KVMKCIVFALKKRFRTRS-------- 214
Query: 286 RGTLPHQSSEQFKFLNKALLASNGSKGYGKVC-SVGEVEEAKALLRLVPIWTTCLVYAIV 344
P +L+ + + + K LLR++ ++ ++ +
Sbjct: 215 -EDWPRLH-----WLD-----------WAAPKYLIRMIRSTKRLLRVLFLFIPLPMFWAL 257
Query: 345 FAQSSTFFTKQGVTMDRSVVADFQIPAASLQSFISLAIVLTIPIYDRIFVP-IARTFTRK 403
F Q + +T Q MD V F I +Q+ L +++ +PI+D + P +A+ TR
Sbjct: 258 FDQQGSRWTLQATRMD-GDVGLFPIQPDQMQAVNPLLVLILVPIFDYVVYPALAKCGTR- 315
Query: 404 PAGITMLQRIGTGMFLSAASMTGATLVEMKRLKTAEEYG 442
T L+++ GM L+A + A L++ K T E
Sbjct: 316 ---FTSLRKMAVGMLLAALAFAVAALLQNKINPTLPEEP 351
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[Transport and binding proteins, Amino acids, peptides and amines]. Length = 641 |
| >gnl|CDD|233189 TIGR00924, yjdL_sub1_fam, amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Score = 84.1 bits (208), Expect = 3e-17
Identities = 96/482 (19%), Positives = 166/482 (34%), Gaps = 82/482 (17%)
Query: 48 VEMAERFAYYGVSSNLITYL--TGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLG 105
VE+ ERF+YYG+ L YL L S A A+S + LL G + D G
Sbjct: 18 VELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWG 77
Query: 106 RYRAIIIASLIYVLGLGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQG 165
+ +++ + VL LG L+ + F+ L IA+G G
Sbjct: 78 TKKTMVLGGI--VLMLGHFMLAMSIYPDL------------------IFYGLGTIAVGSG 117
Query: 166 GHKPCVQAFGADQFDSQHPLESKLKSSFFNWWYFGMCMGTFVTLTVLNYIQDNLNWILGF 225
K + ++ + + F +Y + +G+F++ + I +N + +GF
Sbjct: 118 LFKANPSSMVGKLYERG---DMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGF 174
Query: 226 GIPCILMVIALVVFLLGTKIYRYS------LKGEEKSPFLR-------IGQVFVTAVRNW 272
+ + MVI L+ F G + R L G+ K+ + VF A
Sbjct: 175 NLAAVGMVIGLLTFFAGRHMLRDIGSVPDPLSGQGKTYGKLLLALLAALALVFFCAWLMH 234
Query: 273 RITPSAIALEEEARGTLPHQSSEQFKFLNKALLASNGSKGYGKVCSVGEVEEAKALLRLV 332
+ + I L + F L A +K Y +
Sbjct: 235 HVVIANILLMTVTLAVIIFFFRLAF---KPRLDAVARNKMYA----------------YI 275
Query: 333 PIWTTCLVYAIVFAQ---SSTFFTKQGVTMDRSVVADFQIPAASLQSFISLAIVLTIPIY 389
++ +V+ +++AQ S FF M ++ +P QS +V+ P+
Sbjct: 276 VLFLEAVVFWVLYAQMPTSLNFFADN--NMHHEMLG-MSVPVIWFQSLNPFWVVVGSPVL 332
Query: 390 DRIFVPIARTFTRKPAGITMLQRIGTGMFLSAASMTGATLVEMKRLKTAEEYGLVDKPNV 449
I+ + RK T + GM AS A D
Sbjct: 333 AMIWTRLG----RKGKDPTTPLKFTLGMLFCGASFLTF----------AASIWFADAGG- 377
Query: 450 TIPMSVWWLIPQYALLGVSE-AFTMVGLQEFFYDQVPTELRSVGLSLYLSIFGVGSFLSS 508
S W+++ Y + E + +GL ++ P L L ++ +GS L
Sbjct: 378 --LTSPWFMVLIYLFQTLGELMISPLGL-SWWTKIAPQRLMGQMLGMWFLAQAMGSLLGG 434
Query: 509 FL 510
+L
Sbjct: 435 YL 436
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The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists [Transport and binding proteins, Amino acids, peptides and amines]. Length = 475 |
| >gnl|CDD|237971 PRK15462, PRK15462, dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Score = 75.4 bits (185), Expect = 2e-14
Identities = 51/210 (24%), Positives = 97/210 (46%), Gaps = 23/210 (10%)
Query: 40 RSALFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFL 99
R+ +++ +++ E F++YG+ + LI YLT L A E +A+ + + P+ G FL
Sbjct: 9 RAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFL 68
Query: 100 ADSFLGRYRAIIIASLIYVLGLGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYL 159
AD LG A+++ +L+ +G +L A++ F + SL +
Sbjct: 69 ADKVLGNRMAVMLGALLMAIGHVVL-------------------GASEIHPSFLYLSLAI 109
Query: 160 IALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWYFGMCMGTFVTLTVLNYIQDNL 219
I G G K V + ++ P + F+ Y +G+ + Y Q+
Sbjct: 110 IVCGYGLFKSNVSCLLGELYEPTDP----RRDGGFSLMYAAGNVGSIIAPIACGYAQEEY 165
Query: 220 NWILGFGIPCILMVIALVVFLLGTKIYRYS 249
+W +GFG+ + M+ LV+FL G + + ++
Sbjct: 166 SWAMGFGLAAVGMIAGLVIFLCGNRHFTHT 195
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Length = 493 |
| >gnl|CDD|181969 PRK09584, tppB, putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 8e-07
Identities = 42/202 (20%), Positives = 83/202 (41%), Gaps = 23/202 (11%)
Query: 40 RSALFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFL 99
++ I +E+ ERF YYG+ + YL L S A + +++S + L G +L
Sbjct: 21 KAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWL 80
Query: 100 ADSFLGRYRAIIIASLIYVLGLGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYL 159
D LG R I++ +++ +G L+ S + +
Sbjct: 81 GDKVLGTKRVIMLGAIVLAIGYALVAWSG-------------------HDAGIVYMGMAT 121
Query: 160 IALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWYFGMCMGTFVTLTVLNYIQDNL 219
IA+G G K + + ++ P +L + F +Y + +G+F ++ ++
Sbjct: 122 IAVGNGLFKANPSSLLSTCYEKDDP---RLDGA-FTMYYMSINIGSFFSMLATPWLAAKY 177
Query: 220 NWILGFGIPCILMVIALVVFLL 241
W + F + + M+I +V F
Sbjct: 178 GWSVAFALSVVGMLITVVNFAF 199
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Length = 500 |
| >gnl|CDD|182306 PRK10207, PRK10207, dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 1e-05
Identities = 44/197 (22%), Positives = 80/197 (40%), Gaps = 23/197 (11%)
Query: 45 IIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFL 104
I VE+ ERF YYGV L + L S A A++ + L G ++ D L
Sbjct: 19 IFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLL 78
Query: 105 GRYRAIIIASLIYVLGLGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQ 164
G R I++ +++ +G + +S + F +L IA+G
Sbjct: 79 GTKRTIVLGAIVLAIGYFMTGMSL-------------------LKPDLIFIALGTIAVGN 119
Query: 165 GGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWYFGMCMGTFVTLTVLNYIQDNLNWILG 224
G K A A +P + F +Y + +G+ ++L++ I D + +
Sbjct: 120 GLFK----ANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVT 175
Query: 225 FGIPCILMVIALVVFLL 241
+ + ++IAL+V+
Sbjct: 176 YNLCGAGLIIALLVYFA 192
|
Length = 489 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 5e-04
Identities = 39/188 (20%), Positives = 71/188 (37%), Gaps = 27/188 (14%)
Query: 54 FAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIA 113
G+ S + L L S + A V+A+S +L L +L+D F GR R +++
Sbjct: 12 GLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRF-GRRRVLLLG 70
Query: 114 SLIYVLGLGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQA 173
L++ LG LL ++ + +L+ LG G P A
Sbjct: 71 LLLFALGSLLLAFAS--------------------SLWLLLVGRFLLGLGGGALYPAAAA 110
Query: 174 FGADQFDSQHPLESKLKSSFFNWWYFGMCMGTFVTLTVLNYIQDNLNWILGFGIPCILMV 233
A+ F + + + G +G + + + ++L W F I IL +
Sbjct: 111 LIAEWFPPKE------RGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGL 164
Query: 234 IALVVFLL 241
+ ++ L
Sbjct: 165 LLALLLLF 172
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 525 | |||
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 100.0 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 100.0 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 100.0 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 100.0 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 100.0 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 100.0 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 99.95 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.95 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.94 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.94 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.94 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.94 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.94 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.93 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.93 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.93 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.93 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.93 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.93 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.93 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.93 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.92 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.92 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.92 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.92 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.92 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.92 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.92 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.92 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.91 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.91 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.91 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.91 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.91 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.91 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.91 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.91 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.91 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.91 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.91 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.91 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.9 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.9 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.9 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.9 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.9 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.9 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.9 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.89 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.89 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.89 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.89 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 99.89 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.89 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.89 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.89 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.89 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.89 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.89 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.89 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.89 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.88 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.88 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.88 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.88 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.88 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.88 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.87 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.87 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.87 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.87 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.86 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.86 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.86 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.86 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.86 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.86 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.86 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.85 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.85 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 99.84 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.84 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.84 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 99.83 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.82 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.81 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.81 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 99.8 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 99.79 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 99.78 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.78 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.78 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 99.76 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.76 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.76 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.75 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 99.75 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 99.75 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.75 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 99.72 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 99.72 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.72 | |
| PRK11462 | 460 | putative transporter; Provisional | 99.7 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 99.66 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.64 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 99.64 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.63 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 99.63 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 99.61 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 99.6 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.56 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.55 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 99.55 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 99.55 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.51 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.49 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.49 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 99.46 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.46 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.44 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.43 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.41 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.4 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.4 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.4 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.39 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.39 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.39 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.39 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.38 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.38 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.38 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.38 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.38 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.37 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.36 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 99.35 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.33 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.33 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.33 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 99.32 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.32 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.31 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.31 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.3 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.3 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.29 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.28 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.28 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.28 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.27 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 99.26 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.25 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.24 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.23 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.23 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 99.23 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.22 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 99.21 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.21 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.2 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.19 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 99.16 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.16 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.16 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.15 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.14 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 99.14 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.14 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.13 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.13 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.13 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 99.13 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.13 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.11 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.08 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.08 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.06 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.05 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.05 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.04 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.03 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.03 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.03 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.02 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.0 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.0 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.0 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 98.99 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 98.99 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 98.98 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 98.98 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 98.96 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 98.95 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 98.94 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 98.93 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 98.92 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 98.91 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 98.89 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 98.88 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 98.86 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 98.86 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 98.85 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 98.85 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 98.83 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 98.81 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 98.8 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 98.8 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 98.76 | |
| PRK11043 | 401 | putative transporter; Provisional | 98.75 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 98.75 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 98.74 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 98.72 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 98.71 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 98.68 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 98.68 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 98.62 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 98.53 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 98.53 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 98.49 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 98.48 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 98.47 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 98.41 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 98.37 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 98.31 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 98.29 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 98.28 | |
| PRK11462 | 460 | putative transporter; Provisional | 98.27 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 98.26 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 98.26 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 98.26 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 98.25 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 98.25 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 98.25 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 98.15 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 98.14 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 98.13 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 98.13 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 98.12 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 98.1 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 98.06 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 98.0 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 97.97 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 97.96 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 97.89 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 97.86 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 97.85 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 97.76 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 97.69 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 97.61 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 97.56 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 97.46 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 97.36 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 97.29 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 97.2 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 97.19 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 97.12 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 96.95 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 96.94 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 96.94 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 96.82 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 96.82 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 96.33 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 96.15 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 95.49 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 95.09 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 94.64 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 94.22 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 93.76 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 93.54 | |
| KOG3810 | 433 | consensus Micronutrient transporters (folate trans | 92.88 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 92.05 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 91.82 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 91.21 | |
| KOG3097 | 390 | consensus Predicted membrane protein [Function unk | 91.19 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 89.54 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 89.54 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 89.47 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 89.26 | |
| PF01733 | 309 | Nucleoside_tran: Nucleoside transporter; InterPro: | 86.79 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 85.3 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 83.63 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 81.86 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 81.62 |
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-39 Score=347.06 Aligned_cols=479 Identities=50% Similarity=0.787 Sum_probs=419.5
Q ss_pred cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHH
Q 045562 35 KYGGWRSALFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIAS 114 (525)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~ 114 (525)
....|+....++..+.++++++|++..++-.|+++.+|.+...+.-.++.+.......++.+++++|.|+||.+++.++.
T Consensus 32 ~~g~~~s~~~il~~e~~e~~a~~g~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s 111 (571)
T KOG1237|consen 32 KTGGWLSAPFILGNEVLERLAFFGLVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGS 111 (571)
T ss_pred eechhHhHHHHHHHHHHHHHhHhcchhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 55678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhccCCCCcc----CCCCcCCCc-hhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccc
Q 045562 115 LIYVLGLGLLTLSAVLLSGSTSEC----QNTSCSANQ-FQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKL 189 (525)
Q Consensus 115 ~~~~~~~~l~~~~~~~~~~~~~~~----~~~~~~~~~-~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 189 (525)
++..+|..++.+....+....+.| .-..|.+.. .....++.++.+..+|.|+..|+..++.+|++++..+.+++.
T Consensus 112 ~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~ 191 (571)
T KOG1237|consen 112 LISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKG 191 (571)
T ss_pred HHHHHHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhC
Confidence 999999988888877777766665 233454433 345678888889999999999999999999999777777777
Q ss_pred cceehhhhHHHHhhhhHHHhhhhhhcccccchhhhHHHHHHHHHHHHHHHHhcccceeecCCCCCCchhhhHHHHHHHHH
Q 045562 190 KSSFFNWWYFGMCMGTFVTLTVLNYIQDNLNWILGFGIPCILMVIALVVFLLGTKIYRYSLKGEEKSPFLRIGQVFVTAV 269 (525)
Q Consensus 190 r~~~~~~~~~~~~~g~~~gp~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (525)
+.+.++|+++..++|..++..+..+++++.||...|.++.+++++++++++...+.+++.+|.+ +|..++.+++..+.
T Consensus 192 ~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~iF~~g~~~y~~~~p~g--sp~t~i~~Vlvaa~ 269 (571)
T KOG1237|consen 192 IPSFFNWFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNALAILIFLPGFPFYRYKKPRG--SPKTRIGQVLVAAA 269 (571)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHhhhhcccceeeccHHHHHHHHHHHHHHcCceeEEeeCCCC--CchhHHHHHHHHHH
Confidence 8899999999999999999999999999999999999999999999999999999999988888 89999999999988
Q ss_pred hccccCCchhhh-HhhhhC-CCCCCCccchhhhhHHHhhcCC------CCCCCcccchhhHHHHHHHHHHHHHHHHHHHH
Q 045562 270 RNWRITPSAIAL-EEEARG-TLPHQSSEQFKFLNKALLASNG------SKGYGKVCSVGEVEEAKALLRLVPIWTTCLVY 341 (525)
Q Consensus 270 ~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 341 (525)
+.++...+...+ ++.+.. ....+..+...+++.+.+.++. ...+|+.+..+++++.|.+++.++++....++
T Consensus 270 ~k~~~~~~~~~~~~~~~~~~~~~~~~t~~f~~l~kaa~~~~~~~~~~~~~~~w~lct~~~Vee~K~~lr~~Pi~~~~i~~ 349 (571)
T KOG1237|consen 270 FKRKAVVSLDPEELYYDCTDSVAIEGTKPFRFLDKAALKTSDDLKDGLDANPWRLCTVTQVEEVKAVLRLLPIWLTTIIY 349 (571)
T ss_pred HHHhccCCCcchhccccccccccccCCcccchhhHhhccCCcccccccccCCccCCCceehhhhhhhhhhhHHHHHHHHH
Confidence 877654433211 111111 1111223466777777765422 35679999988999999999999999999999
Q ss_pred HHHHhhccchhhhhhhccccCcccccccChhhhhhhhhHHHHHHHHhhhhhhhhhhhhhccCCCCCCchHHHHHHHHHHH
Q 045562 342 AIVFAQSSTFFTKQGVTMDRSVVADFQIPAASLQSFISLAIVLTIPIYDRIFVPIARTFTRKPAGITMLQRIGTGMFLSA 421 (525)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~l~~r~~~~~~~~~~~~~i~ig~~l~~ 421 (525)
+..+.|+.+.+..|+.+|++..+.++.+|++.++....+...+..|+++++..|+.+|+.+++..+++.+++.+|+++..
T Consensus 350 ~~~~aq~~t~~v~Q~~~mdr~~~~~f~ip~asl~~f~~~~~~~~iplydr~~vP~~~~~t~~~~~~t~lqrig~G~~~si 429 (571)
T KOG1237|consen 350 STVYAQMVTFFVLQATTMDRHLGSNFKIPAASLQVFILLSILIFIPLYDRVIVPFARKLTGNPFGITPLQRIGIGLVLSI 429 (571)
T ss_pred HHHHHhhhhheehhhhhcCCCCCCCeEeCchhHHHHHHHHHHhhhhhcceeehhhhhhhcCCCCCCChhheeeccchHHH
Confidence 99999999999999999999998669999999999999999999999999999999999998778999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhcCCcCCCCCCccchHHHHHHHHHHHHHHHHHHhhhhHHHhhhccCchhHHHHHHHHHHHHH
Q 045562 422 ASMTGATLVEMKRLKTAEEYGLVDKPNVTIPMSVWWLIPQYALLGVSEAFTMVGLQEFFYDQVPTELRSVGLSLYLSIFG 501 (525)
Q Consensus 422 i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~ 501 (525)
+++...+.+|.++.+++.++ ++...+.|.+|++++++++|++|++.+++++++.++++|++||+.+++++.+..+
T Consensus 430 ~sm~~aa~vE~krl~~~~~~-----~~~~~~mSi~W~iPQyvLig~~Evf~~vg~lEFfY~qaP~sMkS~~~al~l~t~a 504 (571)
T KOG1237|consen 430 LSMAVAGIVEAKRLKTAVSL-----LVETNPMSILWQIPQYVLLGAGEVFTSVGGLEFFYSQAPESMKSVATALWLLTVA 504 (571)
T ss_pred HHHHHHHHHHHHHhhhhhhc-----cCCCCCeeHHHHHHHHHHHHHHHHHHhhhhHHHhHhhCCHHHHHHHHHHHHHHHH
Confidence 99999999999999887651 2223479999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhccC
Q 045562 502 VGSFLSSFLISAIENATGG 520 (525)
Q Consensus 502 lg~~lg~~~~~~i~~~~~~ 520 (525)
+|+.++..++..+...+++
T Consensus 505 ~G~~lss~Lv~~v~~~t~~ 523 (571)
T KOG1237|consen 505 VGNYLSSVLVSLVQFSTGK 523 (571)
T ss_pred HHHHHHHHHHHHHHHhcCC
Confidence 9999999999999888854
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=332.71 Aligned_cols=419 Identities=23% Similarity=0.382 Sum_probs=340.5
Q ss_pred CCccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhccccC----CChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchH
Q 045562 32 NRSKYGGWRSALFIIGVEMAERFAYYGVSSNLITYLTGPLA----QSTATAAENVNAWSGVASLLPLFGAFLADSFLGRY 107 (525)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg----~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr 107 (525)
+++..+|||.++.++..++.|+++||+....+..|++.+++ +|.+++..+.++|....++.++++||++||++|+|
T Consensus 13 ~~~~f~~Pr~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~ 92 (498)
T COG3104 13 EMKFFGQPRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTR 92 (498)
T ss_pred ccccCCCCchHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchh
Confidence 44556799999999999999999999999999999998887 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccc
Q 045562 108 RAIIIASLIYVLGLGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLES 187 (525)
Q Consensus 108 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~ 187 (525)
+++++|.+++++|.++++.+.. .....++++..++++|.|+.+|+.+++++|++|+++++
T Consensus 93 ~tI~lGail~~iGh~~L~~~~~------------------~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~Dpr-- 152 (498)
T COG3104 93 RTIVLGAILMAIGHLVLAISSV------------------SGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPR-- 152 (498)
T ss_pred HHHHHHHHHHHHHHHHHhcccc------------------ccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcc--
Confidence 9999999999999999997731 12567889999999999999999999999999998876
Q ss_pred cccceehhhhHHHHhhhhHHHhhhhhhcccccchhhhHHHHHHHHHHHHHHHHhcccceeecCCCCCCchhhh------H
Q 045562 188 KLKSSFFNWWYFGMCMGTFVTLTVLNYIQDNLNWILGFGIPCILMVIALVVFLLGTKIYRYSLKGEEKSPFLR------I 261 (525)
Q Consensus 188 ~~r~~~~~~~~~~~~~g~~~gp~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~ 261 (525)
|-.+++++|.+.|+|+.++|.+.+++.++.||+..|.++++.+.++++.+++.++........++.+|... .
T Consensus 153 --rD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 230 (498)
T COG3104 153 --RDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSFNFLLPVL 230 (498)
T ss_pred --cCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHccchhcCCCCCCCccchhhhhhhhhH
Confidence 89999999999999999999999999999999999999999999999999999887765443322122211 1
Q ss_pred HHHHHHHHhcc--ccCCchhhhHhhhhCCCCCCCccchhhhhHHHhhc-----C---CCCCCCcccchhhHHHHHHHHHH
Q 045562 262 GQVFVTAVRNW--RITPSAIALEEEARGTLPHQSSEQFKFLNKALLAS-----N---GSKGYGKVCSVGEVEEAKALLRL 331 (525)
Q Consensus 262 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~---~~~~~~~~~~~~~~~~~~~l~~~ 331 (525)
...+....... .. ...+.+.....+. . ....++. +.+ .+|++++..
T Consensus 231 ~~~~~~~~~~~~~~~--------------------l~~~~~~~~~~~~~i~~~~~~~~~~~~~~---~~~-~er~r~~~~ 286 (498)
T COG3104 231 GGLVVMILAALLTLL--------------------LNQNTFSGVLLVISILIAIIYFAEAFRSP---KVF-DERRRLLAA 286 (498)
T ss_pred HHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHhccC---ccH-HHHHHHHHH
Confidence 11111111100 00 0000000000000 0 0111111 113 889999999
Q ss_pred HHHHHHHHHHHHHHhhccchhhhhhhc-cccCcccccccChhhhhhhhhHHHHHHHHhhhhhhhhhhhhhccCCCCCCch
Q 045562 332 VPIWTTCLVYAIVFAQSSTFFTKQGVT-MDRSVVADFQIPAASLQSFISLAIVLTIPIYDRIFVPIARTFTRKPAGITML 410 (525)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~l~~r~~~~~~~~~~~ 410 (525)
+++++..++||..+.|+++.+..++.+ .+++..+ ++++++++|++|++.++++.|+.+.++.|+.++. ++++++
T Consensus 287 ~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~g-~~vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~----~~ps~~ 361 (498)
T COG3104 287 IPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIFG-FEVPPAWFQSLNPFFIILFSPILAALWTKLGRGN----KQPSTP 361 (498)
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHhhcccccc-eecCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCC----CCCCcc
Confidence 999999999999999999999988864 4555455 8999999999999999999999999888877764 347899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCcCCCCCCccchHHHHHHHHHHHHHHHHHHhhhhHHHhhhccCchhHH
Q 045562 411 QRIGTGMFLSAASMTGATLVEMKRLKTAEEYGLVDKPNVTIPMSVWWLIPQYALLGVSEAFTMVGLQEFFYDQVPTELRS 490 (525)
Q Consensus 411 ~~i~ig~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg 490 (525)
.++.+|+++++.+++++........+ +. ...|.+|+++.+++.++||.+.+|.+.+++++.+|+++.+
T Consensus 362 ~KFalGl~l~g~~fl~l~~~~~~~~~---~~---------~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~~s 429 (498)
T COG3104 362 IKFALGLILAGLGFLILLLAGIWFGG---PS---------GLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALKS 429 (498)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcC---CC---------CCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHHHH
Confidence 99999999999999998886433211 01 1479999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 045562 491 VGLSLYLSIFGVGSFLSSFLISA 513 (525)
Q Consensus 491 ~~~gi~~~~~~lg~~lg~~~~~~ 513 (525)
..+++|.+....|+.++..+.+.
T Consensus 430 ~~ma~wfLt~a~~~~l~g~va~~ 452 (498)
T COG3104 430 FIMAMWFLTVAAGQTLGGQVAGL 452 (498)
T ss_pred HHHHHHHHHHHHHHHhhceeccc
Confidence 99999999999999999888773
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-36 Score=320.45 Aligned_cols=425 Identities=20% Similarity=0.307 Sum_probs=317.0
Q ss_pred ccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhccc--cCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHH
Q 045562 34 SKYGGWRSALFIIGVEMAERFAYYGVSSNLITYLTGP--LAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAII 111 (525)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~--lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~ 111 (525)
...++||.++.+++.++++++++|++.++++.|++++ +|++..+++.+.+.+.....++++++|+++||++|||+++.
T Consensus 4 ~~~~~p~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~ 83 (475)
T TIGR00924 4 TFFGHPKPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMV 83 (475)
T ss_pred cccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHH
Confidence 4457888999999999999999999999999999987 99999999999999999999999999999999339999999
Q ss_pred HHHHHHHHHHHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccc
Q 045562 112 IASLIYVLGLGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKS 191 (525)
Q Consensus 112 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~ 191 (525)
++.++..++..++++..+ .+.+++++++.|+|.|+..|+..++++|++|+++++ .|+
T Consensus 84 ~~~~~~~~g~~~~~~~~~--------------------~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~---~r~ 140 (475)
T TIGR00924 84 LGGIVLMLGHFMLAMSIY--------------------PDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMP---RRD 140 (475)
T ss_pred HHHHHHHHHHHHHHhccc--------------------HhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcc---ccc
Confidence 999999999988887643 567778999999999999999999999999876422 188
Q ss_pred eehhhhHHHHhhhhHHHhhhhhhcccccchhhhHHHHHHHHHHHHHHHHhcccceeecCCCCCCchhhh----HHHHH--
Q 045562 192 SFFNWWYFGMCMGTFVTLTVLNYIQDNLNWILGFGIPCILMVIALVVFLLGTKIYRYSLKGEEKSPFLR----IGQVF-- 265 (525)
Q Consensus 192 ~~~~~~~~~~~~g~~~gp~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-- 265 (525)
++++++|.+.++|..+||.+++++.+++||++.|.+.++..+++++.++..++.+++.++++ ++..+ ..+..
T Consensus 141 ~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 218 (475)
T TIGR00924 141 GGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIGLLTFFAGRHMLRDIGSVP--DPLSGQGKTYGKLLLA 218 (475)
T ss_pred ceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHcccccccCCCCC--CCcchhhhhhHHHHHH
Confidence 89999999999999999999999999999999999988777777666666665544332222 11100 00000
Q ss_pred -----HHHHhc-cccCCchhhhHhhhhCCCCCCCccchhhhhHHHhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHHH
Q 045562 266 -----VTAVRN-WRITPSAIALEEEARGTLPHQSSEQFKFLNKALLASNGSKGYGKVCSVGEVEEAKALLRLVPIWTTCL 339 (525)
Q Consensus 266 -----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 339 (525)
...... +........... .............. ....| .. ...++++....+.+++...
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~-~~~~~--~~---~~~~~~~~~~~l~l~~~~~ 282 (475)
T TIGR00924 219 LLAALALVFFCAWLMHHVVIANIL----------LMTVTLAVIIFFFR-LAFKP--RL---DAVARNKMYAYIVLFLEAV 282 (475)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHH----------HHHHHHHHHHHHHH-HHHhc--cC---CHHHHhHHHHHHHHHHHHH
Confidence 000000 000000000000 00000000000000 00001 01 1233445556777888889
Q ss_pred HHHHHHhhccchhhhhh-hccccCcccccccChhhhhhhhhHHHHHHHHhhhhhhhhhhhhhccCCCCCCchHHHHHHHH
Q 045562 340 VYAIVFAQSSTFFTKQG-VTMDRSVVADFQIPAASLQSFISLAIVLTIPIYDRIFVPIARTFTRKPAGITMLQRIGTGMF 418 (525)
Q Consensus 340 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~l~~r~~~~~~~~~~~~~i~ig~~ 418 (525)
++|..+.|+.+.+..+. .+++...++ ++.++++++++|++.+++++|+.++++.++.|| ....+...++.+|++
T Consensus 283 ~~~~~~~Q~~s~l~l~~~~~~~~~~~~-~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~----~~~~~~~~k~~~G~~ 357 (475)
T TIGR00924 283 VFWVLYAQMPTSLNFFADNNMHHEMLG-MSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRK----GKDPTTPLKFTLGML 357 (475)
T ss_pred HHHHHHHHhhhHHHHHHHHhccccccc-eEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhC----CCCCCcHHHHHHHHH
Confidence 99999999988776654 346666665 889999999999999999999988755445444 223567778999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcCCcCCCCCCccchHHHHHHHHHHHHHHHHHHhhhhHHHhhhccCchhHHHHHHHHHH
Q 045562 419 LSAASMTGATLVEMKRLKTAEEYGLVDKPNVTIPMSVWWLIPQYALLGVSEAFTMVGLQEFFYDQVPTELRSVGLSLYLS 498 (525)
Q Consensus 419 l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~ 498 (525)
+.+++++...+... +.++++ ..+++|+++++++.++||.+..|..++++++.+|+++||+++|++.+
T Consensus 358 l~~~~~~~~~~~~~----~~~~~~---------~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l 424 (475)
T TIGR00924 358 FCGASFLTFAASIW----FADAGG---------LTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGMWFL 424 (475)
T ss_pred HHHHHHHHHHHHHh----hcCCCC---------ccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 99999988876521 111111 46999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhh
Q 045562 499 IFGVGSFLSSFLISAIENA 517 (525)
Q Consensus 499 ~~~lg~~lg~~~~~~i~~~ 517 (525)
...+|+.+++.+.+...+.
T Consensus 425 ~~~~g~~l~~~~~~~~~~~ 443 (475)
T TIGR00924 425 AQAMGSLLGGYLATFGAVP 443 (475)
T ss_pred HHHHHHHHHHHHHHHHhcc
Confidence 9999999999998876554
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-36 Score=320.67 Aligned_cols=428 Identities=18% Similarity=0.281 Sum_probs=313.1
Q ss_pred cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHH
Q 045562 35 KYGGWRSALFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIAS 114 (525)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~ 114 (525)
.++|||.++.+++.++++++++|+..++++.|+++++|++..++.++.+.+.....+..+++|+++||++||||++.++.
T Consensus 9 ~~~~p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~ 88 (489)
T PRK10207 9 LLQQPRPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGA 88 (489)
T ss_pred hhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHH
Confidence 35789999999999999999999999999999999999999999999999999999999999999999339999999999
Q ss_pred HHHHHHHHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceeh
Q 045562 115 LIYVLGLGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFF 194 (525)
Q Consensus 115 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 194 (525)
+++.++.++++++.+. ...++++|+++++|.|...|+..++++|++|+++++ |.+++
T Consensus 89 ~~~~~g~~~~~~~~~~-------------------~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~----~~~~~ 145 (489)
T PRK10207 89 IVLAIGYFMTGMSLLK-------------------PDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPR----LDGAF 145 (489)
T ss_pred HHHHHHHHHHHHhccc-------------------hhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchh----hhcch
Confidence 9999999998876420 234567899999999999999999999999987522 68899
Q ss_pred hhhHHHHhhhhHHHhhhhhhcccccchhhhHHHHHHHHHHHHHHHHhcccceeecCCCCCCchhhhHHHHHHHHHhcccc
Q 045562 195 NWWYFGMCMGTFVTLTVLNYIQDNLNWILGFGIPCILMVIALVVFLLGTKIYRYSLKGEEKSPFLRIGQVFVTAVRNWRI 274 (525)
Q Consensus 195 ~~~~~~~~~g~~~gp~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (525)
++++++.|+|..+||.+++++.+++||++.|++..+..+++++.+...++.+++.+++.++++. |..+...........
T Consensus 146 ~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~~~~~l~~~~~~~~ 224 (489)
T PRK10207 146 TLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGAGLIIALLVYFACRGMVKDIGSEPDHKPM-SFSKLLLVLLGSVVM 224 (489)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHcchhhcccCCCCCccch-hhhhHHHHHHHHHHH
Confidence 9999999999999999999999999999999998776666666666665544332211111222 211111100000000
Q ss_pred CCchhhhHhhhhCCCCCCCccchhh-hhHHHhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccchhh
Q 045562 275 TPSAIALEEEARGTLPHQSSEQFKF-LNKALLASNGSKGYGKVCSVGEVEEAKALLRLVPIWTTCLVYAIVFAQSSTFFT 353 (525)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (525)
.. ..... . + ....... ......... ... +.+..+.+..++++.+..+.+++...++|..+.|....+.
T Consensus 225 ~~----~~~~~-~-~---~~~~~~~~~~~~~~i~~-~~f-~~~~~~~~~~~r~r~~~~~~l~~~~~~f~~~~~q~~~~l~ 293 (489)
T PRK10207 225 IF----VCAWL-M-H---NVEVANLVLIVLSIVVT-IIF-FREAFKLDKTGRNKMFVAFVLMLEAVVFYILYAQMPTSLN 293 (489)
T ss_pred HH----HHHHH-H-h---hhhHHHHHHHHHHHHHH-HHH-HHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHH
Confidence 00 00000 0 0 0000000 000000000 000 0000000123345555566666778899999999988777
Q ss_pred hhhh-ccccCcccccccChhhhhhhhhHHHHHHHHhhhhhhhhhhhhhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHH
Q 045562 354 KQGV-TMDRSVVADFQIPAASLQSFISLAIVLTIPIYDRIFVPIARTFTRKPAGITMLQRIGTGMFLSAASMTGATLVEM 432 (525)
Q Consensus 354 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~l~~r~~~~~~~~~~~~~i~ig~~l~~i~~~~~~~~~~ 432 (525)
.+.. ..+....+ +..++++++++|++.+++..|+.++ +.+|+++|+..+++.+++.+|+++.+++++.....+.
T Consensus 294 l~~~~~~~~~~~G-~~i~~~~~~~~n~~~iii~~pl~~~----l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~ 368 (489)
T PRK10207 294 FFAINNVHHEILG-FSINPVSFQALNPFWVVVASPILAG----IYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGM 368 (489)
T ss_pred HHHHHhccccccc-eEECHHHHHhHhHHHHHHHHHHHHH----HHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7665 35555554 7888999999999999999999876 5666666666688999999999999999876654332
Q ss_pred HHHhhhhhcCCcCCCCCCccchHHHHHHHHHHHHHHHHHHhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 045562 433 KRLKTAEEYGLVDKPNVTIPMSVWWLIPQYALLGVSEAFTMVGLQEFFYDQVPTELRSVGLSLYLSIFGVGSFLSSFLIS 512 (525)
Q Consensus 433 ~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~~~~~ 512 (525)
.. ...++ ..+.+|+++.+++.++||.+.+|+.++++.+.+|++++|.++|++++.+++|+.+|..+.+
T Consensus 369 ~~---~~~~~---------~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~ 436 (489)
T PRK10207 369 WF---ADAQG---------LTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVAT 436 (489)
T ss_pred hh---cCCCC---------ccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 00111 3578899999999999999999999999999999999999999999999999999998887
Q ss_pred Hh
Q 045562 513 AI 514 (525)
Q Consensus 513 ~i 514 (525)
..
T Consensus 437 ~~ 438 (489)
T PRK10207 437 FT 438 (489)
T ss_pred Hh
Confidence 65
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-36 Score=316.35 Aligned_cols=423 Identities=19% Similarity=0.282 Sum_probs=313.3
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHH
Q 045562 37 GGWRSALFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLI 116 (525)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~ 116 (525)
+|||.++.+++.++++++++|++..++|.|+++.+|++..+++.+.+.+.....++++++|+++||++||||++.++.++
T Consensus 6 ~~p~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il 85 (493)
T PRK15462 6 SQPRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALL 85 (493)
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHH
Confidence 47889999999999999999999999999999999999999999999999999999999999999987999999999999
Q ss_pred HHHHHHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhh
Q 045562 117 YVLGLGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNW 196 (525)
Q Consensus 117 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 196 (525)
.+++.+++..... ....++++..+..+|.|...++.+++++|++|+++++ |.+++++
T Consensus 86 ~~lg~lll~~~~~-------------------~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~----R~sgf~i 142 (493)
T PRK15462 86 MAIGHVVLGASEI-------------------HPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPR----RDGGFSL 142 (493)
T ss_pred HHHHHHHHHHhhc-------------------chhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCcc----ccceehH
Confidence 9988876654321 0133445555667888888899999999999986422 8999999
Q ss_pred hHHHHhhhhHHHhhhhhhcccccchhhhHHHHHHHHHHHHHHHHhcccceeecCCCCCCchhhh--HHHHHH---HHHhc
Q 045562 197 WYFGMCMGTFVTLTVLNYIQDNLNWILGFGIPCILMVIALVVFLLGTKIYRYSLKGEEKSPFLR--IGQVFV---TAVRN 271 (525)
Q Consensus 197 ~~~~~~~g~~~gp~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~---~~~~~ 271 (525)
+|...++|+.++|.+.+++.+..||+..|.+.++.++++++.++..++...+....+ ++|..+ ...... .....
T Consensus 143 ~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l~li~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 221 (493)
T PRK15462 143 MYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIAGLVIFLCGNRHFTHTRGVN-KKVLRATNFLLPNWGWLLVLLV 221 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCC-CCCchhhhHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999988877777777766665543321111 012111 000000 00000
Q ss_pred cccCCchhhhHhhhhCCCCCCCccchhhhhHH----HhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 045562 272 WRITPSAIALEEEARGTLPHQSSEQFKFLNKA----LLASNGSKGYGKVCSVGEVEEAKALLRLVPIWTTCLVYAIVFAQ 347 (525)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 347 (525)
.. .. ..... .. .++.... ....... .-+........++|+++...+.+++..++||..|.|
T Consensus 222 ~~----~~-~~~~~-----~~----~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~er~r~~~~~~l~~~~~~Fw~~~~Q 286 (493)
T PRK15462 222 AT----PA-LITVL-----FW----KEWSVYALIVATIIGLGV-LAKIYRKAENQKQRKELGLIVTLTFFSMLFWAFAQQ 286 (493)
T ss_pred HH----HH-HHHHH-----HH----HHHHHHHHHHHHHHHHHH-HHHHHHhcCCHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 00 00 00000 00 0000000 0000000 000000001256788888999999999999999999
Q ss_pred ccchhhhhhh-ccccCcccccccChhhhhhhhhHHHHHHHHhhhhhhhhhhhhhccCCCCCCchHHHHHHHHHHHHHHHH
Q 045562 348 SSTFFTKQGV-TMDRSVVADFQIPAASLQSFISLAIVLTIPIYDRIFVPIARTFTRKPAGITMLQRIGTGMFLSAASMTG 426 (525)
Q Consensus 348 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~l~~r~~~~~~~~~~~~~i~ig~~l~~i~~~~ 426 (525)
.++.+...+. +.|+.+++ +++|+++++++|++.++++.|+...++.++.+| +++++..+++.+|+++++++++.
T Consensus 287 ~~~sl~lfa~~~vd~~~~g-~~ip~~~~qslNp~~ii~l~P~~a~lw~~l~~~----~~~~s~~~Kfa~g~~~~g~~f~~ 361 (493)
T PRK15462 287 GGSSISLYIDRFVNRDMFG-YTVPTAMFQSINAFAVMLCGVFLAWVVKESVAG----NRTVRIWGKFALGLGLMSAGFCI 361 (493)
T ss_pred hhHHHHHHHHHhccchhcc-eeeCHHHHHhHhHHHHHHHHHHHHHHHHHHhcC----CCCCCcHHHHHHHHHHHHHHHHH
Confidence 9998887764 57888887 999999999999999999999999876555332 33578899999999999999988
Q ss_pred HHHHHHHHHhhhhhcCCcCCCCCCccchHHHHHHHHHHHHHHHHHHhhhhHHHhhhccCchhHHHHHHHHHHHH-HHHHH
Q 045562 427 ATLVEMKRLKTAEEYGLVDKPNVTIPMSVWWLIPQYALLGVSEAFTMVGLQEFFYDQVPTELRSVGLSLYLSIF-GVGSF 505 (525)
Q Consensus 427 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~-~lg~~ 505 (525)
+.+.... .+++| .++++|++..+++.++||.+.+|.+++.+++.+|++.||+.+|+|.+.. .+|+.
T Consensus 362 l~~~~~~----~~~~~---------~~s~~wl~~~~~~~t~gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~ 428 (493)
T PRK15462 362 LTLSARW----SAMYG---------HSSLPLMVLGLAVMGFAELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANY 428 (493)
T ss_pred HHHHHhh----cCCCC---------CcCHHHHHHHHHHHHHHHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence 8765421 11122 3789999999999999999999999999999999999999999997744 67777
Q ss_pred HHHHHHHHhhh
Q 045562 506 LSSFLISAIEN 516 (525)
Q Consensus 506 lg~~~~~~i~~ 516 (525)
++..+.+....
T Consensus 429 ~~g~~~~~~~~ 439 (493)
T PRK15462 429 LAGVIADQTSQ 439 (493)
T ss_pred HHHHHHHHhcc
Confidence 77777776643
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-34 Score=307.06 Aligned_cols=417 Identities=18% Similarity=0.344 Sum_probs=307.8
Q ss_pred cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHH
Q 045562 35 KYGGWRSALFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIAS 114 (525)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~ 114 (525)
..++||.++.+++.++++++++|++.++++.|+++++|++..+.+++.+.+........+++|+++||++|||+++.++.
T Consensus 16 ~~~~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~ 95 (500)
T PRK09584 16 AFKQPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGA 95 (500)
T ss_pred hhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 34678889999999999999999999999999999999999999888888877777777899999999339999999999
Q ss_pred HHHHHHHHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceeh
Q 045562 115 LIYVLGLGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFF 194 (525)
Q Consensus 115 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 194 (525)
++..++..++.++.. ....++++++++|+|.|...|+..++++|++|+++++ |.+++
T Consensus 96 ~~~~ig~~l~~~~~~-------------------~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~----~~~~~ 152 (500)
T PRK09584 96 IVLAIGYALVAWSGH-------------------DAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPR----LDGAF 152 (500)
T ss_pred HHHHHHHHHHHHhcc-------------------cHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchh----hhhcc
Confidence 999999888876532 1456678889999999999999999999999876422 56789
Q ss_pred hhhHHHHhhhhHHHhhhhhhcccccchhhhHHHHHHHHHHHHHHHHhcccceeecCCCCCCchhhhHHHHHH-------H
Q 045562 195 NWWYFGMCMGTFVTLTVLNYIQDNLNWILGFGIPCILMVIALVVFLLGTKIYRYSLKGEEKSPFLRIGQVFV-------T 267 (525)
Q Consensus 195 ~~~~~~~~~g~~~gp~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~ 267 (525)
+++|.+.++|..+||.+++++.+++||++.|++.++..+++++.++..++..++..++.++++.+. .+... .
T Consensus 153 ~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 231 (500)
T PRK09584 153 TMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLITVVNFAFCQRWVKQYGSKPDFEPINY-RKLLLTIVGVVAL 231 (500)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCCccccch-hhHHHHHHHHHHH
Confidence 999999999999999999999999999999999887777766655554433332211110022211 11110 0
Q ss_pred H-HhccccCCchhhhHhhhhCCCCCCCccchhhhhHHHhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045562 268 A-VRNWRITPSAIALEEEARGTLPHQSSEQFKFLNKALLASNGSKGYGKVCSVGEVEEAKALLRLVPIWTTCLVYAIVFA 346 (525)
Q Consensus 268 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 346 (525)
. ...+....... ............ ....+++..+....++++.+..+.+++..+++|..+.
T Consensus 232 ~~~~~~~~~~~~~----------------~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~f~~~~~ 293 (500)
T PRK09584 232 IAIATWLLHNQEI----------------ARMALGVVALGI--VVIFGKEAFAMKGAARRKMIVAFILMLEAIIFFVLYS 293 (500)
T ss_pred HHHHHHHHhcchH----------------HHHHHHHHHHHH--HHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 00000000000 000000000000 0000000000023455666666777788899999999
Q ss_pred hccchhhhhhhc-cccCcccccccChhhhhhhhhHHHHHHHHhhhhhhhhhhhhhccCCCCCCchHHHHHHHHHHHHHHH
Q 045562 347 QSSTFFTKQGVT-MDRSVVADFQIPAASLQSFISLAIVLTIPIYDRIFVPIARTFTRKPAGITMLQRIGTGMFLSAASMT 425 (525)
Q Consensus 347 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~l~~r~~~~~~~~~~~~~i~ig~~l~~i~~~ 425 (525)
|++..+..++.+ .+....+ ...++++++++|++.+++.+|+.+.++ +|+++| .++.+++.+|+++++++++
T Consensus 294 q~~~~l~~~~~~~~~~~~~g-~~i~~~~~~s~n~i~iil~~p~~~~~~----~~l~~r---~~~~~~~~~G~~l~~l~f~ 365 (500)
T PRK09584 294 QMPTSLNFFAIRNVEHSILG-IAVEPEQYQALNPFWIMIGSPILAAIY----NKMGDR---LPMPHKFAIGMVLCSGAFL 365 (500)
T ss_pred HhccHHHHHHHHhccccccc-eEECHHHHHHHhHHHHHHHHHHHHHHH----HHhCcC---CCcHHHHHHHHHHHHHHHH
Confidence 999998887643 4555555 788999999999999999999998854 444444 5678999999999999999
Q ss_pred HHHHHHHHHHhhhhhcCCcCCCCCCccchHHHHHHHHHHHHHHHHHHhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHH
Q 045562 426 GATLVEMKRLKTAEEYGLVDKPNVTIPMSVWWLIPQYALLGVSEAFTMVGLQEFFYDQVPTELRSVGLSLYLSIFGVGSF 505 (525)
Q Consensus 426 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~ 505 (525)
.......+ .+++| .++.+|+++.+++.++||++.+|...+++.+.+|+++||+++|++.+...+|+.
T Consensus 366 ~l~~~~~~----~~~~~---------~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~ 432 (500)
T PRK09584 366 VLPLGAKF----ANDAG---------IVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAAL 432 (500)
T ss_pred HHHHHHHh----cCCCC---------ccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHH
Confidence 98775422 22223 578889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh
Q 045562 506 LSSFLISAI 514 (525)
Q Consensus 506 lg~~~~~~i 514 (525)
++..+.+..
T Consensus 433 ~~g~~~~~~ 441 (500)
T PRK09584 433 IAGYVANLM 441 (500)
T ss_pred HHHHHHHHh
Confidence 988887644
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-25 Score=245.69 Aligned_cols=338 Identities=32% Similarity=0.560 Sum_probs=272.7
Q ss_pred HHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhccC
Q 045562 54 FAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVLGLGLLTLSAVLLSG 133 (525)
Q Consensus 54 ~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~~~~~l~~~~~~~~~~ 133 (525)
+++|++...+..|+++.+|++.+.+..+...+.....+.++++|+++|+++||++.+.++.+++.+|..++++...++..
T Consensus 1 FsyYGm~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~ 80 (654)
T TIGR00926 1 FSYYGMRTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSG 80 (654)
T ss_pred CceeecHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999888875431111
Q ss_pred CCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhhHHHHhhhhHHHhhhhh
Q 045562 134 STSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWYFGMCMGTFVTLTVLN 213 (525)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~ 213 (525)
. +......+++..+.++|.|+.+|+..++.+|+++++++ +.|.++++++|+++|+|+.+++++.+
T Consensus 81 ~------------~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~---~~~~s~F~~fY~~iNiGSlis~~i~~ 145 (654)
T TIGR00926 81 H------------PLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQL---SLRSRFFSFFYFAINAGSLISTIITP 145 (654)
T ss_pred c------------chHHHHHHHHHHHHHhhccccccCchhhhHhhcCccch---hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 12235577888999999999999999999999986432 22889999999999999999999999
Q ss_pred hcccc-------cchhhhHHHHHHHHHHHHHHHHhcccceeecCCCCCCchhhhHHHHHHHHHhccccCCchhhhHhhhh
Q 045562 214 YIQDN-------LNWILGFGIPCILMVIALVVFLLGTKIYRYSLKGEEKSPFLRIGQVFVTAVRNWRITPSAIALEEEAR 286 (525)
Q Consensus 214 ~l~~~-------~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (525)
++.++ .+|..+|.++++++++++++++...+.+++.++.+ ++..++.++...+.+++.....
T Consensus 146 ~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf~~g~k~y~~~~p~g--s~l~~v~~vi~~a~~~~~~~~~--------- 214 (654)
T TIGR00926 146 ILRGDVGCFGCQDCYPLAFGVPAILMILALIVFMAGSKMYKKKPPKG--NIVSKVIKCIVTALRKRFSTRS--------- 214 (654)
T ss_pred HHHHhhcccccCcchHHHHHHHHHHHHHHHHHHHHhccccCCCCCCc--cHHHHHHHHHHHHHHHhhccCC---------
Confidence 98744 36999999999999999999888888776665555 6666666666555543221110
Q ss_pred CCCCCCCccchhhhhHHHhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhccccCcccc
Q 045562 287 GTLPHQSSEQFKFLNKALLASNGSKGYGKVCSVGEVEEAKALLRLVPIWTTCLVYAIVFAQSSTFFTKQGVTMDRSVVAD 366 (525)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (525)
.+...+|.+.+.. + ..+++++++|++++.+.+++...++|..+.|..+.+..|+.+++..+++
T Consensus 215 ------~~~~~~~ld~a~~-------~---~~~~~V~evkrll~il~l~i~~~ifw~~~~Q~~s~~~~qa~~m~~~l~g- 277 (654)
T TIGR00926 215 ------EHWPLHWLDYAKD-------K---HDIRMIRSTKRLLRVLVLFIPLPMFWALFDQQGSRWTLQATRMDGDVGG- 277 (654)
T ss_pred ------cccchhHHHHhcc-------c---cccchHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHhcCccCC-
Confidence 0011233332211 0 1123578889999999999999999999999999999999888877766
Q ss_pred cccChhhhhhhhhHHHHHHHHhhhhhhhhhhhhhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 045562 367 FQIPAASLQSFISLAIVLTIPIYDRIFVPIARTFTRKPAGITMLQRIGTGMFLSAASMTGATLVEMKRLKT 437 (525)
Q Consensus 367 ~~~~~~~~~~~~~~~~i~~~~l~~~~~~~l~~r~~~~~~~~~~~~~i~ig~~l~~i~~~~~~~~~~~~~~~ 437 (525)
+.+++.+++.+|++.++++.|+++..+.|..+|.+.+ +++.+++.+|+++.++++++...++..++++
T Consensus 278 ~~ip~~~lq~~n~L~IIil~Pi~~~~lyp~l~~~~~~---ls~l~k~~iG~~la~la~~va~~ve~~~~~~ 345 (654)
T TIGR00926 278 FEIQPDQMQVVNPLLILIFVPIFDYIVYPAIAKCGTR---FTSLRKMAVGGLLAALSFFVAALVQLKVNPT 345 (654)
T ss_pred EecCHHHHHHHHHHHHHHhHHHHHHhHHHHHHhcCCC---CChHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 8899999999999999999999998878877776544 7899999999999999999999999888643
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.1e-25 Score=223.99 Aligned_cols=360 Identities=14% Similarity=0.084 Sum_probs=243.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHHHHHHHH
Q 045562 45 IIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVLGLGLL 124 (525)
Q Consensus 45 ~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~~~~~l~ 124 (525)
++...+...++.......+|.|.. +++.+..+.+++.+.+.++..++.++.|+++||+ |||+++..+.++..++..++
T Consensus 4 l~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~~~~~~~~~~~~~~~~ 81 (365)
T TIGR00900 4 LFAAQLISLIGTAITQVALPLYVL-AGTGSASVLSLAALAGMLPYVVLSPIAGALADRY-DRKKVMIGADLIRAVLVAVL 81 (365)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH-HhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhh-chhHHHHHHHHHHHHHHHHH
Confidence 455666666666667777888876 5899999999999999999999999999999999 99999999988888877777
Q ss_pred HHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhhHHHHhhh
Q 045562 125 TLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWYFGMCMG 204 (525)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g 204 (525)
.+....+. .+.+.+++.|++.|++.+...+...+++.|.+|+++ |++++++.+....+|
T Consensus 82 ~~~~~~~~---------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g 140 (365)
T TIGR00900 82 PFVALLGG---------------LNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQ------LTQANSLSQAVRSLF 140 (365)
T ss_pred HHHHHcCC---------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH------HHHHHhHHHHHHHHH
Confidence 66642100 137888999999999999999999999999999988 999999999999999
Q ss_pred hHHHhhhhhhcccccchhhhHHHHHHHHHHHHHHHHhcccceeecCCCCCCchhh-hHHHHHHHHHhccccCCchhhhHh
Q 045562 205 TFVTLTVLNYIQDNLNWILGFGIPCILMVIALVVFLLGTKIYRYSLKGEEKSPFL-RIGQVFVTAVRNWRITPSAIALEE 283 (525)
Q Consensus 205 ~~~gp~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 283 (525)
..+||.+++++.+..||+..|++.++..++..+..+..+.+.++. +++ ++.. +..+
T Consensus 141 ~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~-------------------- 197 (365)
T TIGR00900 141 YIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLIVSVRIPELAA-SEI--QALSNAVLR-------------------- 197 (365)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcccccCCC-ccc--cccchhHHH--------------------
Confidence 999999999999999999999888776665554444333211110 011 0000 0000
Q ss_pred hhhCCCCCCCccchhhhhHHHhhcCCCCCCCcccchhhHHHHHHHHHHHHHH-HHHHHHHHHHhhccchhhhhhhccccC
Q 045562 284 EARGTLPHQSSEQFKFLNKALLASNGSKGYGKVCSVGEVEEAKALLRLVPIW-TTCLVYAIVFAQSSTFFTKQGVTMDRS 362 (525)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (525)
+..+. ++ ...+.+.++...... +....+..........+..+....+
T Consensus 198 --------------~~~~~-----------~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 245 (365)
T TIGR00900 198 --------------DTREG-----------IK-----FVLKNPLLRTLLLLALLFNLVFAPAIVALFPYVQSKYLGRG-- 245 (365)
T ss_pred --------------HHHhH-----------HH-----HHHcCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCc--
Confidence 00000 00 011111222211111 1111111121112122221111111
Q ss_pred cccccccChhhhhhhhhHHHHHHHHhhhhhhhhhhhhhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcC
Q 045562 363 VVADFQIPAASLQSFISLAIVLTIPIYDRIFVPIARTFTRKPAGITMLQRIGTGMFLSAASMTGATLVEMKRLKTAEEYG 442 (525)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~l~~r~~~~~~~~~~~~~i~ig~~l~~i~~~~~~~~~~~~~~~~~~~g 442 (525)
....+.+.....+..++..++.++ +.||.++| +.+..+..+.+++.....+..
T Consensus 246 -----~~~~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~----------- 298 (365)
T TIGR00900 246 -----STHYGWVLAAFGLGALLGALLLGL----LGRYFKRM-------ALMTGAIFVIGLAILVVGLTP----------- 298 (365)
T ss_pred -----hHHHHHHHHHHHHHHHHHHHHHHH----HHHHhchh-------HHHHHHHHHHHHHHHHHHhhc-----------
Confidence 111223334444444455555443 56664443 556666666777666665531
Q ss_pred CcCCCCCCccchHHHHHHHHHHHHHHHHHHhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 045562 443 LVDKPNVTIPMSVWWLIPQYALLGVSEAFTMVGLQEFFYDQVPTELRSVGLSLYLSIFGVGSFLSSFLISAIENATG 519 (525)
Q Consensus 443 ~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~~~~~~i~~~~~ 519 (525)
+ +.+...+..++.+++.+...+..++++.+..|++.||++.|++++...++..+++.+.|.+.+..|
T Consensus 299 ---------~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~~g 365 (365)
T TIGR00900 299 ---------P-NFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLADHLG 365 (365)
T ss_pred ---------h-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 1 356667778899999999999999999999999999999999999999999999999999998764
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.4e-24 Score=225.22 Aligned_cols=350 Identities=12% Similarity=0.133 Sum_probs=242.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHHHHHH
Q 045562 43 LFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVLGLG 122 (525)
Q Consensus 43 ~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~~~~~ 122 (525)
++++...++...+.+.+.++++.|+++++|.|..+.|++.+...+...+..+++|+++||+ |||+++..+.++..++.+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~-g~k~~l~~~~~~~~~~~~ 91 (400)
T PRK11646 13 YFLLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRF-GAKPMIVTGMLMRAAGFA 91 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHh-CchHHHHHHHHHHHHHHH
Confidence 6677888889999999999999999999999999999999999999999999999999999 999999999999999888
Q ss_pred HHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhhHHHHh
Q 045562 123 LLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWYFGMC 202 (525)
Q Consensus 123 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 202 (525)
++...++ .+.+++.|++.|++.+...|...+++.|.+|+++ |++++++.+...+
T Consensus 92 ~~~~~~~--------------------~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~a~~~~~~~~~ 145 (400)
T PRK11646 92 TMAIAHE--------------------PWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQ------RGRFFSLLMMQDS 145 (400)
T ss_pred HHHHhcc--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHH
Confidence 8876643 6778899999999998888999999999999888 9999999999999
Q ss_pred hhhHHHhhhhhhcccccchhhhHHHHHHHHHHHHHHHHhcccceeecCCCCCCchhhhHHHHHHHHHhccccCCchhhhH
Q 045562 203 MGTFVTLTVLNYIQDNLNWILGFGIPCILMVIALVVFLLGTKIYRYSLKGEEKSPFLRIGQVFVTAVRNWRITPSAIALE 282 (525)
Q Consensus 203 ~g~~~gp~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (525)
+|..+||.+++++. .+||++.|++.++..++..+......++.+.+ +.+ ++ ..+.
T Consensus 146 ~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~~~i~~~~~~~~~~~~-~~~--~~---~~~~------------------ 200 (400)
T PRK11646 146 AGAVIGALLGSWLL-QYDFRLVCATGAVLFVLAAAFNAWLLPAYKLS-TVR--TP---VREG------------------ 200 (400)
T ss_pred HHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHhCCccccc-ccc--hh---hHHH------------------
Confidence 99999999999998 68999999988766555443333333321100 000 00 0000
Q ss_pred hhhhCCCCCCCccchhhhhHHHhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhccccC
Q 045562 283 EEARGTLPHQSSEQFKFLNKALLASNGSKGYGKVCSVGEVEEAKALLRLVPIWTTCLVYAIVFAQSSTFFTKQGVTMDRS 362 (525)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (525)
+ + +...+ ++++..... ...++..+.+....++.+. ...
T Consensus 201 ----------------~---------------~----~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~p~~~---~~~ 238 (400)
T PRK11646 201 ----------------M---------------T----RVLRD-KRFVTYVLT---LTGYYMLAVQVMLMLPIMV---NDI 238 (400)
T ss_pred ----------------H---------------H----HHHcC-chHHHHHHH---HHHHHHHHHHHHHhhhhhH---Hhh
Confidence 0 0 00111 111111111 1111111112111111111 110
Q ss_pred cccccccChhhhhhhhhHHHHHHHHhhhhhhhhhhhhhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcC
Q 045562 363 VVADFQIPAASLQSFISLAIVLTIPIYDRIFVPIARTFTRKPAGITMLQRIGTGMFLSAASMTGATLVEMKRLKTAEEYG 442 (525)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~l~~r~~~~~~~~~~~~~i~ig~~l~~i~~~~~~~~~~~~~~~~~~~g 442 (525)
+. .....+.+.....+......... .+..+|. ....+.+..+.++.+++.+.+...
T Consensus 239 -~~-~~~~~g~l~~~~~~~~~~~~~~~----~~~~~~r------~~~~~~~~~~~~~~~~~~~~l~~~------------ 294 (400)
T PRK11646 239 -AG-SPSAVKWMYAIEACLSLTLLYPI----ARWSEKR------FRLEHRLMAGLLIMSLSMFPIGMV------------ 294 (400)
T ss_pred -cC-CchHHHHHHHHHHHHHHHHHHHH----HHHHHHh------cchhHHHHHHHHHHHHHHHHHHHh------------
Confidence 00 11112223333333332222222 2233321 223355677777777777666543
Q ss_pred CcCCCCCCccchHHHHHHHHHHHHHHHHHHhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC
Q 045562 443 LVDKPNVTIPMSVWWLIPQYALLGVSEAFTMVGLQEFFYDQVPTELRSVGLSLYLSIFGVGSFLSSFLISAIENATGG 520 (525)
Q Consensus 443 ~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~~~~~~i~~~~~~ 520 (525)
.+.+++....++.+++++...|...+++.+.+|++.||+++|++++...+|+.+|+.+.|.+.+.+++
T Consensus 295 ----------~~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~~ 362 (400)
T PRK11646 295 ----------SNLQQLFTLICLFYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGKA 362 (400)
T ss_pred ----------hhHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHhh
Confidence 23445555667788899999999999999999999999999999999999999999999999998754
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.6e-24 Score=221.03 Aligned_cols=352 Identities=12% Similarity=0.078 Sum_probs=242.3
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHH
Q 045562 39 WRSALFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYV 118 (525)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~ 118 (525)
.|++..+....+...++.....+.+|.|+.+++|.|..+.+++.+.+.+...+++++.|+++||+ ||||++..+.++..
T Consensus 14 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~-g~r~~l~~~~~~~~ 92 (399)
T PRK05122 14 TLRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTL-GPKKAVVFGLCGCA 92 (399)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhcc-CCcchHHHHHHHHH
Confidence 45677788888888899888999999999999999999999999999999999999999999999 99999999998888
Q ss_pred HHHHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhhH
Q 045562 119 LGLGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWY 198 (525)
Q Consensus 119 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 198 (525)
++.+.+.+....... ...+...+++.|+++|++.+...+...+++.|.+|+++ |++++++..
T Consensus 93 ~~~~~~~~~~~~~~~------------~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~ 154 (399)
T PRK05122 93 LSGLLYLLAGLLAAW------------PVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALH------TGRVISWNG 154 (399)
T ss_pred HHHHHHHHhhhhhcc------------chhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhh------hccchhhhh
Confidence 776666554321100 00235678999999999999999999999999999988 999999999
Q ss_pred HHHhhhhHHHhhhhhhcccccchhhhHHHHHHHHHHHHHHHHhcccceeecCCCCCCchhhhHHHHHHHHHhccccCCch
Q 045562 199 FGMCMGTFVTLTVLNYIQDNLNWILGFGIPCILMVIALVVFLLGTKIYRYSLKGEEKSPFLRIGQVFVTAVRNWRITPSA 278 (525)
Q Consensus 199 ~~~~~g~~~gp~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (525)
...+.|..+||.+++++.+++||+..+++.++..++.++.. ++. ++.++++ ++..
T Consensus 155 ~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~--~~~~------------------- 209 (399)
T PRK05122 155 IATYGALAIGAPLGVLLYHWGGLAGLGLLIMLLALLGLLLA---RPR-PAVPPVK--GERL------------------- 209 (399)
T ss_pred hhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHH---hcC-CCCCCCC--ccch-------------------
Confidence 99999999999999999999999998877665443332221 111 1111111 0000
Q ss_pred hhhHhhhhCCCCCCCccchhhhhHHHhhcCCCCCCCcccchhhHHHHHHHHHHH-HHHHHHHHHHHHHhhccchhhhhhh
Q 045562 279 IALEEEARGTLPHQSSEQFKFLNKALLASNGSKGYGKVCSVGEVEEAKALLRLV-PIWTTCLVYAIVFAQSSTFFTKQGV 357 (525)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (525)
++ ....++.+... ...+....+.......+.++..+
T Consensus 210 -------------------~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 246 (399)
T PRK05122 210 -------------------PF----------------------RRVLGRVWPYGMGLALASIGFGTIATFITLYYAAR-- 246 (399)
T ss_pred -------------------hH----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--
Confidence 00 00000111100 01111111111111111111110
Q ss_pred ccccCcccccccChhhhhhhhhHHHHHHHHhhhhhhhhhhhhhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 045562 358 TMDRSVVADFQIPAASLQSFISLAIVLTIPIYDRIFVPIARTFTRKPAGITMLQRIGTGMFLSAASMTGATLVEMKRLKT 437 (525)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~l~~r~~~~~~~~~~~~~i~ig~~l~~i~~~~~~~~~~~~~~~ 437 (525)
. .. ..........+..++..++.++ +.||.++| +.+..+.++.+++.......
T Consensus 247 --~------~~-~~~~~~~~~~~~~~~~~~~~g~----l~~r~~~~-------~~~~~~~~~~~~~~~~~~~~------- 299 (399)
T PRK05122 247 --G------WD-GAALALTLFGVAFVGARLLFGN----LINRLGGL-------RVAIVSLLVEILGLLLLWLA------- 299 (399)
T ss_pred --c------cc-cchHHHHHHHHHHHHHHHHHHH----HHHHhccH-------HHHHHHHHHHHHHHHHHHHh-------
Confidence 1 10 1112223333344444444443 67775443 66777777777776666543
Q ss_pred hhhcCCcCCCCCCccchHHHHHHHHHHHHHHHHHHhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 045562 438 AEEYGLVDKPNVTIPMSVWWLIPQYALLGVSEAFTMVGLQEFFYDQVPTELRSVGLSLYLSIFGVGSFLSSFLISAIENA 517 (525)
Q Consensus 438 ~~~~g~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~~~~~~i~~~ 517 (525)
.+.+.+.+..++.|++.+...+.......+..|++.||+++|+++....+|..+++.+.|.+.+.
T Consensus 300 ---------------~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~ 364 (399)
T PRK05122 300 ---------------PSPWMALIGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASW 364 (399)
T ss_pred ---------------ccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 24555666778899999988888888888999999999999999999999999999999999887
Q ss_pred cc
Q 045562 518 TG 519 (525)
Q Consensus 518 ~~ 519 (525)
.|
T Consensus 365 ~g 366 (399)
T PRK05122 365 FG 366 (399)
T ss_pred cC
Confidence 64
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.2e-25 Score=228.80 Aligned_cols=358 Identities=15% Similarity=0.086 Sum_probs=243.4
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHH
Q 045562 37 GGWRSALFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLI 116 (525)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~ 116 (525)
+.+|+.+.++...++...+.+.+.++++.|+++++|+|..+++++.+.+.+...+..++.|+++||+ |||+++.++.++
T Consensus 4 ~~~~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~k~~~~~~~~~ 82 (395)
T PRK10054 4 SLRRSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKF-DKKRYMLLAITA 82 (395)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CcchhHHHHHHH
Confidence 3466788888899999999999999999999999999999999999999999999999999999998 999999999988
Q ss_pred HHHHHHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhh
Q 045562 117 YVLGLGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNW 196 (525)
Q Consensus 117 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 196 (525)
..++.+++.+.++ .+.+++.+.+.+.+.+...+...+...|.+|+++ |++++++
T Consensus 83 ~~~~~~~~~~~~~--------------------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~g~ 136 (395)
T PRK10054 83 FASGFIAIPLVNN--------------------VTLVVLFFALINCAYSVFSTVLKAWFADNLSSTS------KTKIFSL 136 (395)
T ss_pred HHHHHHHHHHHhH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhH------HHHHHHH
Confidence 8888877777654 5667777888888777778888999999999888 9999999
Q ss_pred hHHHHhhhhHHHhhhhhhcccccchhhhHHHHHHHHHHHHHHHHhcccceeecCCCCCCchhhhHHHHHHHHHhccccCC
Q 045562 197 WYFGMCMGTFVTLTVLNYIQDNLNWILGFGIPCILMVIALVVFLLGTKIYRYSLKGEEKSPFLRIGQVFVTAVRNWRITP 276 (525)
Q Consensus 197 ~~~~~~~g~~~gp~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (525)
.+...++|..+||.+++++.+ .+|+.+|.+.+++.++.++......++.++.++++ ++ +..+
T Consensus 137 ~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~--~~--~~~~------------- 198 (395)
T PRK10054 137 NYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAAICSAFPLVFIQIWVQRSEKAIATE--TG--SVWS------------- 198 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHHHHHHHHHHHHHHHHhccccccccc--hh--hhhh-------------
Confidence 999999999999999998875 79999999888776666544433222211110000 00 0000
Q ss_pred chhhhHhhhhCCCCCCCccchhhhhHHHhhcCCCCCCCcccchhhHHHHHHHHHHHH-HHHHHHHHHHHHhhccchhhhh
Q 045562 277 SAIALEEEARGTLPHQSSEQFKFLNKALLASNGSKGYGKVCSVGEVEEAKALLRLVP-IWTTCLVYAIVFAQSSTFFTKQ 355 (525)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 355 (525)
. + ...+.|+++.... ..+............+.+....
T Consensus 199 ----------------------------------------~-~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 236 (395)
T PRK10054 199 ----------------------------------------P-S-VLLQDKALLWFTCSGFLASFVSGAFASCISQYVMVV 236 (395)
T ss_pred ----------------------------------------h-h-hhccCceehHHHHHHHHHHHHHHHhhhhHHHHHHHh
Confidence 0 0 0011111111111 1111111111111111111110
Q ss_pred hhccccCcccccccChhhhhhhhhHHHHHHHHhhhhhhhhhhhhhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045562 356 GVTMDRSVVADFQIPAASLQSFISLAIVLTIPIYDRIFVPIARTFTRKPAGITMLQRIGTGMFLSAASMTGATLVEMKRL 435 (525)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~l~~r~~~~~~~~~~~~~i~ig~~l~~i~~~~~~~~~~~~~ 435 (525)
. +. +. .....+.+...+....+...+.. .++.||.+ +++.+..++++.++++......
T Consensus 237 -~--~~--~~-~~~~~g~~~~~~~~~~~~~~~~~----g~~~~~~~-------~~~~l~~~~~~~~~~~~~~~~~----- 294 (395)
T PRK10054 237 -A--DS--DF-AEKVVAVVLPVNAAMVVSLQYSV----GRRLNAAN-------IRPLMTAGTLCFVIGLVGFIFS----- 294 (395)
T ss_pred -c--cc--ch-HHHHHHHHHHhhhhheeeehhHH----HHHHccCC-------chhHHHHHHHHHHHHHHHHHHc-----
Confidence 0 10 00 00111223333333333333332 23555543 3366777877777777665542
Q ss_pred hhhhhcCCcCCCCCCccchHHHHHHHHHHHHHHHHHHhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 045562 436 KTAEEYGLVDKPNVTIPMSVWWLIPQYALLGVSEAFTMVGLQEFFYDQVPTELRSVGLSLYLSIFGVGSFLSSFLISAIE 515 (525)
Q Consensus 436 ~~~~~~g~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~~~~~~i~ 515 (525)
..+++.+....++.++|+....|..++++.+.+|++.||++.+..+ ...+|..+||.+.|.+.
T Consensus 295 ----------------~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~ 357 (395)
T PRK10054 295 ----------------GNSLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVIL 357 (395)
T ss_pred ----------------chHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHH
Confidence 1244545566789999999999999999999999999999998766 56689999999999999
Q ss_pred hhccC
Q 045562 516 NATGG 520 (525)
Q Consensus 516 ~~~~~ 520 (525)
+..|.
T Consensus 358 ~~~g~ 362 (395)
T PRK10054 358 TTLPP 362 (395)
T ss_pred HHcCh
Confidence 98753
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.7e-24 Score=221.01 Aligned_cols=352 Identities=13% Similarity=0.123 Sum_probs=236.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHHH
Q 045562 40 RSALFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVL 119 (525)
Q Consensus 40 ~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~~ 119 (525)
+..+.+.+..+....+.....+.+|.|+++++|.|..+.+++.+.+.+...+++++.|+++||+ ||||++..+.+...+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~-g~r~~l~~~~~~~~~ 93 (392)
T PRK12382 15 FSLFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQY-GAKRSALQGMLACGL 93 (392)
T ss_pred ccHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhh-cchHHHHHHHHHHHH
Confidence 3456666677777778888889999999999999999999999999999999999999999999 999999998887666
Q ss_pred HHHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhhHH
Q 045562 120 GLGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWYF 199 (525)
Q Consensus 120 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 199 (525)
+.+........+. ....+.+.+++.|+++|++.+...+...+++.|.+|+++ |++++++++.
T Consensus 94 ~~~~~~~~~~~~~------------~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~a~~~~~~ 155 (392)
T PRK12382 94 AGLAYLLAAILPV------------SAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKH------SGKVMSWNGM 155 (392)
T ss_pred HHHHHHhhhcccc------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccc------cchhhhHHHH
Confidence 5543322211000 001236788999999999999988888899999999888 9999999999
Q ss_pred HHhhhhHHHhhhhhhcccccchhhhHHHHHHHHHHHHHHHHhcccceeecCCCCCCchhhhHHHHHHHHHhccccCCchh
Q 045562 200 GMCMGTFVTLTVLNYIQDNLNWILGFGIPCILMVIALVVFLLGTKIYRYSLKGEEKSPFLRIGQVFVTAVRNWRITPSAI 279 (525)
Q Consensus 200 ~~~~g~~~gp~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (525)
+.+.|..+||.+++++.+.+||+..+.+..+..++.+ ...++ .++.++++++++ +
T Consensus 156 ~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~--~------------------- 210 (392)
T PRK12382 156 AMYGALAAGAPLGLLLHSHFGFAALALTTMVLPLLAW---AFNGT-VRKVPAHAGERP--S------------------- 210 (392)
T ss_pred HHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHH---HHHHh-ccCCCCCcccCc--h-------------------
Confidence 9999999999999999998999987765544332222 11111 111111110000 0
Q ss_pred hhHhhhhCCCCCCCccchhhhhHHHhhcCCCCCCCcccchhhHHHHHHHHHH-HHHHHHHHHHHHHHhhccchhhhhhhc
Q 045562 280 ALEEEARGTLPHQSSEQFKFLNKALLASNGSKGYGKVCSVGEVEEAKALLRL-VPIWTTCLVYAIVFAQSSTFFTKQGVT 358 (525)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (525)
. + +..+.++.. ....+....+.......+.++..
T Consensus 211 -------------------~---------------~-------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~---- 245 (392)
T PRK12382 211 -------------------L---------------W-------SVVGLIWKPGLGLALQGVGFAVIGTFVSLYFAS---- 245 (392)
T ss_pred -------------------H---------------H-------HHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHh----
Confidence 0 0 000000000 00111111111111111111111
Q ss_pred cccCcccccccChhhhhhhhhHHHHHHHHhhhhhhhhhhhhhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 045562 359 MDRSVVADFQIPAASLQSFISLAIVLTIPIYDRIFVPIARTFTRKPAGITMLQRIGTGMFLSAASMTGATLVEMKRLKTA 438 (525)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~l~~r~~~~~~~~~~~~~i~ig~~l~~i~~~~~~~~~~~~~~~~ 438 (525)
. + .. ..........+..++..++.++ +.||.++| +.+..+..+.+++++.....
T Consensus 246 --~--~--~~-~~~~~~~~~~~~~~~~~~~~g~----l~~r~g~~-------~~~~~~~~~~~~~~~~~~~~-------- 299 (392)
T PRK12382 246 --K--G--WA-MAGFTLTAFGGAFVLMRVLFGW----MPDRFGGV-------KVAIVSLLVETVGLLLLWLA-------- 299 (392)
T ss_pred --c--C--Cc-hhHHHHHHHHHHHHHHHHHHHH----HHHhcCCC-------eehHHHHHHHHHHHHHHHHc--------
Confidence 0 0 10 1112222333334444555444 67776554 55667777777776665542
Q ss_pred hhcCCcCCCCCCccchHHHHHHHHHHHHHHHHHHhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 045562 439 EEYGLVDKPNVTIPMSVWWLIPQYALLGVSEAFTMVGLQEFFYDQVPTELRSVGLSLYLSIFGVGSFLSSFLISAIENAT 518 (525)
Q Consensus 439 ~~~g~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~~~~~~i~~~~ 518 (525)
.+.+......++.+++.+...+.......+..|+++||++.|++++...+|+.+++.+.+.+.+..
T Consensus 300 --------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~ 365 (392)
T PRK12382 300 --------------PTAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSF 365 (392)
T ss_pred --------------ccHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 244555667788899988888888889999999999999999999999999999999999999876
Q ss_pred cC
Q 045562 519 GG 520 (525)
Q Consensus 519 ~~ 520 (525)
|-
T Consensus 366 g~ 367 (392)
T PRK12382 366 GY 367 (392)
T ss_pred Cc
Confidence 53
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.8e-24 Score=222.82 Aligned_cols=350 Identities=13% Similarity=0.118 Sum_probs=236.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHH
Q 045562 39 WRSALFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYV 118 (525)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~ 118 (525)
|..++.+.+..+......|...+.+|. +.+++|.|..+.++..+.+.+...++.++.|+++||+ |||+++..+.++..
T Consensus 8 ~~~~~~l~~~~~~~~~~~~~~~~~~~~-l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~ 85 (390)
T PRK03545 8 WLRVVTLALAAFIFNTTEFVPVGLLSD-IAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNV-ERRKLLIGLFVLFI 85 (390)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHcchHH-HHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-ChHHHHHHHHHHHH
Confidence 444555566666655555554455554 6679999999999999999999999999999999999 99999999999999
Q ss_pred HHHHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhhH
Q 045562 119 LGLGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWY 198 (525)
Q Consensus 119 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 198 (525)
++.+++.++++ ++.+++.|+++|++.+...+...+++.|++|+++ |+++++++.
T Consensus 86 ~~~~~~~~~~~--------------------~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~g~~~ 139 (390)
T PRK03545 86 ASHVLSALAWN--------------------FTVLLISRIGIAFAHAIFWSITASLAIRVAPAGK------KAQALSLLA 139 (390)
T ss_pred HHHHHHHHhcc--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhh------hhhHHHHHH
Confidence 99888888754 7889999999999999888999999999999988 999999999
Q ss_pred HHHhhhhHHHhhhhhhcccccchhhhHHHHHHHHHHHHHHHHhcccceeecCCCCCCchhhhHHHHHHHHHhccccCCch
Q 045562 199 FGMCMGTFVTLTVLNYIQDNLNWILGFGIPCILMVIALVVFLLGTKIYRYSLKGEEKSPFLRIGQVFVTAVRNWRITPSA 278 (525)
Q Consensus 199 ~~~~~g~~~gp~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (525)
.+.++|..++|.+++.+.+..|||+.|++.++..++..+..+...++.+ ++++++..+. .
T Consensus 140 ~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~----~~~~~~~~~~----~------------ 199 (390)
T PRK03545 140 TGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLLIKLLPLLP----SEHSGSLKSL----P------------ 199 (390)
T ss_pred HHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhCCCCC----CCCcchHHHH----H------------
Confidence 9999999999999999999899999999988766555444333323211 1100100000 0
Q ss_pred hhhHhhhhCCCCCCCccchhhhhHHHhhcCCCCCCCcccchhhHHHHHHHHHHHH-HHHHHHHHHHHHhhccchhhhhhh
Q 045562 279 IALEEEARGTLPHQSSEQFKFLNKALLASNGSKGYGKVCSVGEVEEAKALLRLVP-IWTTCLVYAIVFAQSSTFFTKQGV 357 (525)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 357 (525)
+...++.++.... ..+.....+..+...+.++.. ..
T Consensus 200 ------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~ 236 (390)
T PRK03545 200 ------------------------------------------LLFRRPALVSLYLLTVVVVTAHFTAYSYIEPFVQQ-VA 236 (390)
T ss_pred ------------------------------------------HHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hc
Confidence 0111111111111 111111122222212222211 01
Q ss_pred ccccCcccccccChhhhhhhhhHHHHHHHHhhhhhhhhhhhhhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 045562 358 TMDRSVVADFQIPAASLQSFISLAIVLTIPIYDRIFVPIARTFTRKPAGITMLQRIGTGMFLSAASMTGATLVEMKRLKT 437 (525)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~l~~r~~~~~~~~~~~~~i~ig~~l~~i~~~~~~~~~~~~~~~ 437 (525)
.++ ....+.+.....+..++..++.++ +.||.++ +.+..+..+.+++.......
T Consensus 237 g~s-------~~~~~~~~~~~~~~~~~g~~~~g~----l~dr~~~--------~~~~~~~~~~~~~~~~l~~~------- 290 (390)
T PRK03545 237 GLS-------ENFATLLLLLFGGAGIIGSVLFSR----LGNRHPS--------GFLLIAIALLLVCLLLLLPA------- 290 (390)
T ss_pred CCC-------ccHHHHHHHHHHHHHHHHHHHHHH----Hhhccch--------hHHHHHHHHHHHHHHHHHHH-------
Confidence 111 111223334444444555555444 6666443 23445555555554433322
Q ss_pred hhhcCCcCCCCCCccchHHHHHHHHHHHHHHHHHHhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 045562 438 AEEYGLVDKPNVTIPMSVWWLIPQYALLGVSEAFTMVGLQEFFYDQVPTELRSVGLSLYLSIFGVGSFLSSFLISAIENA 517 (525)
Q Consensus 438 ~~~~g~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~~~~~~i~~~ 517 (525)
..+.+.++...++.|++.....+..++.+.+..| +.|++++|+++....+|..+|+.+.|.+.+.
T Consensus 291 --------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~ 355 (390)
T PRK03545 291 --------------ANSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLH 355 (390)
T ss_pred --------------hchHHHHHHHHHHHHHHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 1355666667788888888777888888888877 5789999999999999999999999999987
Q ss_pred ccC
Q 045562 518 TGG 520 (525)
Q Consensus 518 ~~~ 520 (525)
.|-
T Consensus 356 ~g~ 358 (390)
T PRK03545 356 LGL 358 (390)
T ss_pred cCh
Confidence 754
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.2e-24 Score=221.20 Aligned_cols=359 Identities=13% Similarity=0.064 Sum_probs=237.4
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHH
Q 045562 39 WRSALFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYV 118 (525)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~ 118 (525)
|..+....+..+.+.+..+......| .+.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||+++..+.++..
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~ 91 (406)
T PRK11551 14 ALTIGLCFLVALLEGLDLQSAGVAAP-RMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRI-GRKRILIVSVALFG 91 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHH
Confidence 44455555566666666666555555 45568999999999999999999999999999999999 99999999998888
Q ss_pred HHHHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhhH
Q 045562 119 LGLGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWY 198 (525)
Q Consensus 119 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 198 (525)
++.+++.+..+ ++.+++.|++.|++.+...+...+++.|.+|+++ |++++++.+
T Consensus 92 ~~~~~~~~~~~--------------------~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~ 145 (406)
T PRK11551 92 LFSLATAQAWD--------------------FPSLLVARLLTGVGLGGALPNLIALTSEAVGPRL------RGTAVSLMY 145 (406)
T ss_pred HHHHHHHHhcc--------------------HHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHH------HHHHHHHHH
Confidence 88777776643 6888899999999999999999999999999988 999999999
Q ss_pred HHHhhhhHHHhhhhhhcccccchhhhHHHHHHHHHHHHHHHHhcccceeecCCCCCCchhhhHHHHHHHHHhccccCCch
Q 045562 199 FGMCMGTFVTLTVLNYIQDNLNWILGFGIPCILMVIALVVFLLGTKIYRYSLKGEEKSPFLRIGQVFVTAVRNWRITPSA 278 (525)
Q Consensus 199 ~~~~~g~~~gp~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (525)
....+|..++|.+++.+.+.++|+..|++.+++.++..+......++.++.++++ +...
T Consensus 146 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~------------------- 204 (406)
T PRK11551 146 CGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAA--GAGK------------------- 204 (406)
T ss_pred HHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhcc--Ccch-------------------
Confidence 9999999999999999988899999999877655554444433333221110000 0000
Q ss_pred hhhHhhhhCCCCCCCccchhhhhHHHhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhc
Q 045562 279 IALEEEARGTLPHQSSEQFKFLNKALLASNGSKGYGKVCSVGEVEEAKALLRLVPIWTTCLVYAIVFAQSSTFFTKQGVT 358 (525)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (525)
+.....+. ..+ ....++...............+....+.+.++.. ..
T Consensus 205 ----------------~~~~~~~~--------------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~--~g 251 (406)
T PRK11551 205 ----------------QRAPVLRA--------------LFG-EGRATATLLLWISYFFTLIVLYFLLNWLPSLLVG--QG 251 (406)
T ss_pred ----------------hhhhhHHH--------------Hhh-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CC
Confidence 00000000 000 0011111111111111112222222222222211 11
Q ss_pred cccCcccccccChhhhhhhhhHHHHHHHHhhhhhhhhhhhhhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 045562 359 MDRSVVADFQIPAASLQSFISLAIVLTIPIYDRIFVPIARTFTRKPAGITMLQRIGTGMFLSAASMTGATLVEMKRLKTA 438 (525)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~l~~r~~~~~~~~~~~~~i~ig~~l~~i~~~~~~~~~~~~~~~~ 438 (525)
++ ....+.+.....+..++...+.+. +.||+++| +.+.++.+..+++++.....
T Consensus 252 ~s-------~~~~~~~~~~~~~~~~~~~~~~g~----l~dr~g~~-------~~~~~~~~~~~~~~~~~~~~-------- 305 (406)
T PRK11551 252 LS-------RSQAGLVQIAFNIGGALGSLLIGA----LMDRLRPR-------RVVLLIYAGILASLAALAAA-------- 305 (406)
T ss_pred CC-------hhhhhHHHHHHHHHHHHHHHHHHH----HHHHHhHH-------HHHHHHHHHHHHHHHHHHhc--------
Confidence 11 111223344444444455555444 67775543 45555555555555444432
Q ss_pred hhcCCcCCCCCCccchHHHHHHHHHHHHHHHHHHhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 045562 439 EEYGLVDKPNVTIPMSVWWLIPQYALLGVSEAFTMVGLQEFFYDQVPTELRSVGLSLYLSIFGVGSFLSSFLISAIENAT 518 (525)
Q Consensus 439 ~~~g~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~~~~~~i~~~~ 518 (525)
.+.+.+....++.+++.....+...++..+..|++.||++.|+.+....+|..+++.+.|.+.+..
T Consensus 306 --------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~ 371 (406)
T PRK11551 306 --------------PSFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALG 371 (406)
T ss_pred --------------CcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccC
Confidence 244555566677788777788888999999999999999999999999999999999999998765
Q ss_pred c
Q 045562 519 G 519 (525)
Q Consensus 519 ~ 519 (525)
+
T Consensus 372 ~ 372 (406)
T PRK11551 372 R 372 (406)
T ss_pred C
Confidence 4
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.9e-24 Score=226.72 Aligned_cols=396 Identities=15% Similarity=0.129 Sum_probs=248.3
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHH
Q 045562 39 WRSALFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYV 118 (525)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~ 118 (525)
|..+..+....+...+..-.+..-+|. +.+++|.+..+.+|+.+.+.++..+..++.|+++||+ |||+++..+.+++.
T Consensus 5 ~~~~~~~~~~~~~~~ld~tiv~~a~p~-i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~-Grk~~l~~~~~~~~ 82 (495)
T PRK14995 5 WLTLVIIVLVYIPVAIDATVLHVAAPT-LSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRI-GFKRLLMLGGTLFG 82 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHH
Confidence 334445555555555555545445554 5678999999999999999999999999999999999 99999999999999
Q ss_pred HHHHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccc-cCCCcccccccceehhhh
Q 045562 119 LGLGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQF-DSQHPLESKLKSSFFNWW 197 (525)
Q Consensus 119 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~-~~~~~~~~~~r~~~~~~~ 197 (525)
++.++++++++ .+.++++|+++|+|.++..|...+.+.+.+ |+++ |+++++++
T Consensus 83 ~~~~~~~~a~~--------------------~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~------r~~~~g~~ 136 (495)
T PRK14995 83 LASLAAAFSPT--------------------ASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQ------RNMALGVW 136 (495)
T ss_pred HHHHHHHHcCC--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH------HHHHHHHH
Confidence 99999998754 788999999999999998888888887877 5566 99999999
Q ss_pred HHHHhhhhHHHhhhhhhcccccchhhhHHHHHHHHHHHHHHHHhcccceeecCCCCCCchhhhHHHHHHHHHhccccCCc
Q 045562 198 YFGMCMGTFVTLTVLNYIQDNLNWILGFGIPCILMVIALVVFLLGTKIYRYSLKGEEKSPFLRIGQVFVTAVRNWRITPS 277 (525)
Q Consensus 198 ~~~~~~g~~~gp~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (525)
....++|..+||.+++++.+++|||+.|++...+.++.++..+...++.+++ ++ ++. |..+.............
T Consensus 137 ~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~~-~~---~~~-d~~g~~~~~~~~~~l~~- 210 (495)
T PRK14995 137 AAVGSGGAAFGPLVGGILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQAGR-RD---QPL-NLGHALMLIVAILLLVY- 210 (495)
T ss_pred HHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhCCCCCCC-CC---CCC-ChHhHHHHHHHHHHHHH-
Confidence 9999999999999999999999999999998876666555544444432211 11 111 11111110000000000
Q ss_pred hhhhHhhhhCCCCCCCccchhhhhH----------HHh--hcCCCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 045562 278 AIALEEEARGTLPHQSSEQFKFLNK----------ALL--ASNGSKGYGKVCSVGEVEEAKALLRLVPIWTTCLVYAIVF 345 (525)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 345 (525)
... .. .+.....+.-. ..+ .+...+.|..+.. ..+.+.+.......+... ..+
T Consensus 211 ---~~~--~~----~~~~~~~~~~~~~~~~~~~~l~~f~~~e~~~~~p~~~~~---lf~~~~~~~~~~~~~~~~---~~~ 275 (495)
T PRK14995 211 ---SAK--TA----LKGFLSLWVTSLTLLTGALLLGLFIRTQLAASRPMIDMR---LFTHRIILSGVVMAMTAM---ITL 275 (495)
T ss_pred ---HHH--hc----cccCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCcCHH---HhCCcccHHHHHHHHHHH---HHH
Confidence 000 00 00000000000 000 0011122321111 111122222111111111 111
Q ss_pred hhccchhhhhhhccccCcccccccChhhhhhhhhHHHHHHHHhhhhhhhhhhhhhccCCCCCCchHHHHHHHHHHHHHHH
Q 045562 346 AQSSTFFTKQGVTMDRSVVADFQIPAASLQSFISLAIVLTIPIYDRIFVPIARTFTRKPAGITMLQRIGTGMFLSAASMT 425 (525)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~l~~r~~~~~~~~~~~~~i~ig~~l~~i~~~ 425 (525)
.....+++.+ ++...+. .....+.+.....+...+..++.++ +.||.++| +.+..|.++.++++.
T Consensus 276 ~~~~~~~~~~---lq~v~g~-s~~~ag~~~~~~~~~~~~~~~~~g~----l~~r~g~~-------~~~~~g~~~~~~~~~ 340 (495)
T PRK14995 276 VGFELLMAQE---LQFVHGL-SPLEAGMFMLPVMVASGFSGPIAGI----LVSRLGLR-------LVATGGMALSALSFY 340 (495)
T ss_pred HHHHHHHHHH---HHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHHH----HHHHcCch-------HHHHHHHHHHHHHHH
Confidence 1111111111 1111111 1122233444445555556666555 67776544 567778888877776
Q ss_pred HHHHHHHHHHhhhhhcCCcCCCCCCccchHHHHHHHHHHHHHHHHHHhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHH
Q 045562 426 GATLVEMKRLKTAEEYGLVDKPNVTIPMSVWWLIPQYALLGVSEAFTMVGLQEFFYDQVPTELRSVGLSLYLSIFGVGSF 505 (525)
Q Consensus 426 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~ 505 (525)
....... ..+.+......++.|+|.++..++.+..+.+.+|++++|.+++++++.+.+|+.
T Consensus 341 ~l~~~~~-------------------~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~ 401 (495)
T PRK14995 341 GLAMTDF-------------------STQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAG 401 (495)
T ss_pred HHHHhcC-------------------CCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHH
Confidence 6554310 124455566788899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhh
Q 045562 506 LSSFLISAIENA 517 (525)
Q Consensus 506 lg~~~~~~i~~~ 517 (525)
+|+.+.+.+.+.
T Consensus 402 ~G~ai~g~i~~~ 413 (495)
T PRK14995 402 LGIAIFGLLLSR 413 (495)
T ss_pred HHHHHHHHHHHH
Confidence 999999988654
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.6e-23 Score=212.32 Aligned_cols=352 Identities=15% Similarity=0.149 Sum_probs=257.1
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHH
Q 045562 38 GWRSALFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIY 117 (525)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~ 117 (525)
.+..++.+....|.....-+...+.+|. +.+++|.|...+|..++.|..+..++.|+...++||+ .||++++..+.++
T Consensus 11 ~~~~l~aLa~~~F~igttEfv~~gLLp~-iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~-~Rr~lLl~~l~lF 88 (394)
T COG2814 11 MWLALLALALAAFAIGTTEFVPVGLLPP-IAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRL-ERRRLLLGLLALF 88 (394)
T ss_pred chHHHHHHHHHHHHHHhHHHHHHhchHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccc-chHHHHHHHHHHH
Confidence 3667888889999999999999998887 5679999999999999999999999999999999999 9999999999999
Q ss_pred HHHHHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhh
Q 045562 118 VLGLGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWW 197 (525)
Q Consensus 118 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 197 (525)
+++.++++++.+ ++.++++|++.|+..|.+++...++.+++.|+++ |++++++.
T Consensus 89 i~~n~l~alAp~--------------------f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~------~~~Aiaiv 142 (394)
T COG2814 89 IVSNLLSALAPS--------------------FAVLLLARALAGLAHGVFWSIAAALAARLVPPGK------RGRALALV 142 (394)
T ss_pred HHHHHHHHHhcc--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc------hhhHHHHH
Confidence 999999999966 8999999999999999999999999999999999 99999999
Q ss_pred HHHHhhhhHHHhhhhhhcccccchhhhHHHHHHHHHHHHHHHHhcccceeecCCCCCCchhhhHHHHHHHHHhccccCCc
Q 045562 198 YFGMCMGTFVTLTVLNYIQDNLNWILGFGIPCILMVIALVVFLLGTKIYRYSLKGEEKSPFLRIGQVFVTAVRNWRITPS 277 (525)
Q Consensus 198 ~~~~~~g~~~gp~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (525)
..+..++.++|.+++.++.+.+|||.+|++.+.+.+++++..+...| +...++....+..+..
T Consensus 143 ~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP--~~~~~~~~~~~~~~~~--------------- 205 (394)
T COG2814 143 FTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLLP--PSEISGSLPGPLRTLL--------------- 205 (394)
T ss_pred HHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC--CccCCCCCCcchhHHH---------------
Confidence 99999999999999999999999999999988888887777666655 1111111001100000
Q ss_pred hhhhHhhhhCCCCCCCccchhhhhHHHhhcCCCCCCCcccchhhHHHHHHHHH-HHHHHHHHHHHHHHHhhccchhhhhh
Q 045562 278 AIALEEEARGTLPHQSSEQFKFLNKALLASNGSKGYGKVCSVGEVEEAKALLR-LVPIWTTCLVYAIVFAQSSTFFTKQG 356 (525)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (525)
..-.+++++. .....+.....|..|..+..++.+.
T Consensus 206 -------------------------------------------~~l~~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v- 241 (394)
T COG2814 206 -------------------------------------------RLLRRPGVLLGLLATFLFMTGHFALYTYIRPFLESV- 241 (394)
T ss_pred -------------------------------------------HHhcCchHHHHHHHHHHHHcchhhhHHhHHHHHHHc-
Confidence 0111122222 2222233333444443333333221
Q ss_pred hccccCcccccccChhhhhhhhhHHHHHHHHhhhhhhhhhhhhhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045562 357 VTMDRSVVADFQIPAASLQSFISLAIVLTIPIYDRIFVPIARTFTRKPAGITMLQRIGTGMFLSAASMTGATLVEMKRLK 436 (525)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~l~~r~~~~~~~~~~~~~i~ig~~l~~i~~~~~~~~~~~~~~ 436 (525)
.+. .....++......+..++...+.++ +.|| + +++.+.....+.++.++.+.+.
T Consensus 242 ------~g~-s~~~vs~~Ll~~Gv~~~~Gn~~gGr----l~dr-~-------~~~~l~~~~~l~a~~~l~l~~~------ 296 (394)
T COG2814 242 ------AGF-SVSAVSLVLLAFGIAGFIGNLLGGR----LADR-G-------PRRALIAALLLLALALLALTFT------ 296 (394)
T ss_pred ------cCC-CHhHHHHHHHHHHHHHHHHHHHHhh----hccc-c-------chhHHHHHHHHHHHHHHHHHHh------
Confidence 111 1112233445555555666666555 6666 2 2356666767777777776664
Q ss_pred hhhhcCCcCCCCCCccchHHHHHHHHHHHHHHHHHHhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 045562 437 TAEEYGLVDKPNVTIPMSVWWLIPQYALLGVSEAFTMVGLQEFFYDQVPTELRSVGLSLYLSIFGVGSFLSSFLISAIEN 516 (525)
Q Consensus 437 ~~~~~g~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~~~~~~i~~ 516 (525)
+.+.+......++.+++.....+..+....+.+ ++.++.+++++....++|..+|..+.|.+.+
T Consensus 297 ---------------~~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~~~-p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~ 360 (394)
T COG2814 297 ---------------GASPALALALLFLWGFAFSPALQGLQTRLARLA-PDAADLAGSLNVAAFNLGIALGAALGGLVLD 360 (394)
T ss_pred ---------------cchHHHHHHHHHHHHHHhhhhhhHHHHHhcccC-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 235555555666666665555555555555533 4669999999999999999999999999998
Q ss_pred hcc
Q 045562 517 ATG 519 (525)
Q Consensus 517 ~~~ 519 (525)
..|
T Consensus 361 ~~g 363 (394)
T COG2814 361 ALG 363 (394)
T ss_pred hhc
Confidence 854
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.5e-23 Score=218.73 Aligned_cols=352 Identities=9% Similarity=0.068 Sum_probs=236.3
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHH
Q 045562 36 YGGWRSALFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASL 115 (525)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~ 115 (525)
|+.|+.+..+.+..+......|...+.+|.+ .+++|.++.+.++..+.+.+...++.++.|+++||+ |||++++.+.+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~-grr~~~~~~~~ 93 (394)
T PRK10213 16 RPNWSAVFSVAFCVACLIIVEFLPVSLLTPM-AQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQAT-DRRYVVILFAV 93 (394)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHH-HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccc-CcHHHHHHHHH
Confidence 4457777777777777777777777777775 468999999999999999999999999999999999 99999999999
Q ss_pred HHHHHHHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehh
Q 045562 116 IYVLGLGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFN 195 (525)
Q Consensus 116 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 195 (525)
+.+++.+++.+.++ ++.+++.|+++|++.+...|...+++.|.+|+++ |+++.+
T Consensus 94 ~~~~~~~~~~~~~~--------------------~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~------~~~a~~ 147 (394)
T PRK10213 94 LLTLSCLLVSFANS--------------------FSLLLIGRACLGLALGGFWAMSASLTMRLVPPRT------VPKALS 147 (394)
T ss_pred HHHHHHHHHHHHCh--------------------HHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhH------HHHHHH
Confidence 99998888877644 7899999999999999999999999999999988 999999
Q ss_pred hhHHHHhhhhHHHhhhhhhcccccchhhhHHHHHHHHHHHHHHHHhcccceeecCCCCCCchhhhHHHHHHHHHhccccC
Q 045562 196 WWYFGMCMGTFVTLTVLNYIQDNLNWILGFGIPCILMVIALVVFLLGTKIYRYSLKGEEKSPFLRIGQVFVTAVRNWRIT 275 (525)
Q Consensus 196 ~~~~~~~~g~~~gp~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (525)
+.....++|..++|.+++++.+.+||++.|++.+++.++..+......++. ++++ ++..+
T Consensus 148 ~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l~~~~~~p~~----~~~~-~~~~~--------------- 207 (394)
T PRK10213 148 VIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIFWIIKSLPSL----PGEP-SHQKQ--------------- 207 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHCCCC----Cccc-ccchh---------------
Confidence 999999999999999999999999999999988765554443333222221 1110 00000
Q ss_pred CchhhhHhhhhCCCCCCCccchhhhhHHHhhcCCCCCCCcccchhhHHHHHHHHHHHHH-HHHHHHHHHHHhhccchhhh
Q 045562 276 PSAIALEEEARGTLPHQSSEQFKFLNKALLASNGSKGYGKVCSVGEVEEAKALLRLVPI-WTTCLVYAIVFAQSSTFFTK 354 (525)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~ 354 (525)
++ . ...+++.++..... +......+..+...+..+..
T Consensus 208 ----------------------~~-----------------~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 245 (394)
T PRK10213 208 ----------------------NT-----------------F---RLLQRPGVMAGMIAIFMSFAGQFAFFTYIRPVYMN 245 (394)
T ss_pred ----------------------HH-----------------H---HHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 0 01111222222111 11111111111111122211
Q ss_pred hhhccccCcccccccChhhhhhhhhHHHHHHHHhhhhhhhhhhhhhccCCCCCCchHHHHHHHHH-HHHHHHHHHHHHHH
Q 045562 355 QGVTMDRSVVADFQIPAASLQSFISLAIVLTIPIYDRIFVPIARTFTRKPAGITMLQRIGTGMFL-SAASMTGATLVEMK 433 (525)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~l~~r~~~~~~~~~~~~~i~ig~~l-~~i~~~~~~~~~~~ 433 (525)
.. +. .....+.+.....+..++...+.++ +.||.. .+.+..+..+ ....++.....
T Consensus 246 ---~~----g~-s~~~~g~~~~~~~~~~iig~~~~~~----l~~r~~--------~~~l~~~~~~~~~~~~~l~~~~--- 302 (394)
T PRK10213 246 ---LA----GF-GVDGLTLVLLSFGIASFVGTSLSSF----ILKRSV--------KLALAGAPLVLAVSALVLTLWG--- 302 (394)
T ss_pred ---hc----CC-ChhHHHHHHHHHHHHHHHHHHHHHH----HHhccc--------hhHHHHHHHHHHHHHHHHHHHh---
Confidence 11 11 0111122333333444444444333 555521 1222333333 33333333321
Q ss_pred HHhhhhhcCCcCCCCCCccchHHHHHHHHHHHHHHHHHHhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045562 434 RLKTAEEYGLVDKPNVTIPMSVWWLIPQYALLGVSEAFTMVGLQEFFYDQVPTELRSVGLSLYLSIFGVGSFLSSFLISA 513 (525)
Q Consensus 434 ~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~~~~~~ 513 (525)
.+.+.+....++.|++.+...+..++++.+..|+ .+++..+++.....+|..+|+.+.|.
T Consensus 303 -------------------~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~lg~~~G~~l~G~ 362 (394)
T PRK10213 303 -------------------SDKIVATGVAIIWGLTFALVPVGWSTWITRSLAD-QAEKAGSIQVAVIQLANTCGAAIGGY 362 (394)
T ss_pred -------------------hhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2455666678888999999999999999999985 47788888888889999999999999
Q ss_pred hhhhccC
Q 045562 514 IENATGG 520 (525)
Q Consensus 514 i~~~~~~ 520 (525)
+.+..|.
T Consensus 363 l~~~~g~ 369 (394)
T PRK10213 363 ALDNIGL 369 (394)
T ss_pred HHhccCh
Confidence 9987754
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.6e-23 Score=217.94 Aligned_cols=382 Identities=12% Similarity=0.078 Sum_probs=234.9
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHH
Q 045562 37 GGWRSALFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLI 116 (525)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~ 116 (525)
.+|+......+..+...+..+......+ .+++++|.+..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~-g~r~~~~~~~~~ 86 (405)
T TIGR00891 9 AQWNAFSAAWLGWLLDAFDFFLVALVLA-EVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRY-GRRLPMVTSIVL 86 (405)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHH
Confidence 4566666777777777777776666655 56779999999999999999999999999999999999 999999999998
Q ss_pred HHHHHHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhh
Q 045562 117 YVLGLGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNW 196 (525)
Q Consensus 117 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 196 (525)
.+++.+++.+..+ ++.+++.|++.|++.+...+...+++.|.+|+++ |+++.++
T Consensus 87 ~~~~~~~~~~~~~--------------------~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~ 140 (405)
T TIGR00891 87 FSAGTLACGFAPG--------------------YITMFIARLVIGIGMGGEYGSSAAYVIESWPKHL------RNKASGL 140 (405)
T ss_pred HHHHHHHHHHhcc--------------------HHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhh------hhHHHHH
Confidence 8888888877644 7888999999999999999999999999999988 9999999
Q ss_pred hHHHHhhhhHHHhhhhhhcccccc--hhhhHHHHHHHHHHHHHHHHhcccceeecCCCCCCchhhhHHHHHHHHHhcccc
Q 045562 197 WYFGMCMGTFVTLTVLNYIQDNLN--WILGFGIPCILMVIALVVFLLGTKIYRYSLKGEEKSPFLRIGQVFVTAVRNWRI 274 (525)
Q Consensus 197 ~~~~~~~g~~~gp~~~~~l~~~~g--~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (525)
.+....+|..++|.+++.+.+..+ |++.|.+.++..++.++..... ++.++.++++ +...+..+......++...
T Consensus 141 ~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 217 (405)
T TIGR00891 141 LISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFALWLRKNI-PEAEDWKEKH--AGKALVRTMVDILYGGEHR 217 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHhC-CCChhHHHHh--hhhhhhhhHHHHHhccchh
Confidence 999999999999999998887666 9999987665544443333222 2211100000 0000000000000000000
Q ss_pred CCchhhhHhhhhCCCCCCCccchhhhhHHHhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhh
Q 045562 275 TPSAIALEEEARGTLPHQSSEQFKFLNKALLASNGSKGYGKVCSVGEVEEAKALLRLVPIWTTCLVYAIVFAQSSTFFTK 354 (525)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (525)
.+....+. ..+ ... ....++...... .................++.
T Consensus 218 --------------------~~~~~~~~--------~~~---~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 263 (405)
T TIGR00891 218 --------------------IANIVMTL--------AAA---MVQ-SAGKRWPTFVYL--VVLVLFANLYSHPIQDLLPT 263 (405)
T ss_pred --------------------hhhhhhhh--------hHH---hhh-hhhhhhHHHHHH--HHHHHHHHHHHhhhhhhhHH
Confidence 00000000 000 000 000111111111 11111111111111111221
Q ss_pred hhhccccCcccccccChhhhhhhhhHHHHHHHHhhhhhhhhhhhhhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 045562 355 QGVTMDRSVVADFQIPAASLQSFISLAIVLTIPIYDRIFVPIARTFTRKPAGITMLQRIGTGMFLSAASMTGATLVEMKR 434 (525)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~l~~r~~~~~~~~~~~~~i~ig~~l~~i~~~~~~~~~~~~ 434 (525)
+. ....+. .....+.+.....+..++..++.++ +.||+++| +.+.++.++.++........
T Consensus 264 ~~---~~~~g~-s~~~~~~~~~~~~~~~~~g~~~~g~----l~dr~g~~-------~~~~~~~~~~~~~~~~~~~~---- 324 (405)
T TIGR00891 264 YL---KADLGL-SPHTVANIVVFSNIGAIVGGCVFGF----LGDWLGRR-------KAYVCSLLAGQLLIIPVFAI---- 324 (405)
T ss_pred HH---HHHhCC-CHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhCch-------hhhHHHHHHHHHHHHHHHHh----
Confidence 11 000111 1111223344445555555555554 67776655 44445544443322221111
Q ss_pred HhhhhhcCCcCCCCCCccchHHHHHHHHHHHHHHHHHHhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045562 435 LKTAEEYGLVDKPNVTIPMSVWWLIPQYALLGVSEAFTMVGLQEFFYDQVPTELRSVGLSLYLSIFGVGSFLSSFLISAI 514 (525)
Q Consensus 435 ~~~~~~~g~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~~~~~~i 514 (525)
..+.+.+.+..++.++......+....++.+..|++.||+++|+.+....+|..++|.+.|.+
T Consensus 325 -----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l 387 (405)
T TIGR00891 325 -----------------GANVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALL 387 (405)
T ss_pred -----------------CCchHHHHHHHHHHHHHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 123344444445555555555667778899999999999999999999999999999999999
Q ss_pred hhhcc
Q 045562 515 ENATG 519 (525)
Q Consensus 515 ~~~~~ 519 (525)
.+..|
T Consensus 388 ~~~~g 392 (405)
T TIGR00891 388 AQRLD 392 (405)
T ss_pred HHhcc
Confidence 99887
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.8e-24 Score=217.31 Aligned_cols=349 Identities=22% Similarity=0.303 Sum_probs=230.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHHHHHHHHH
Q 045562 46 IGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVLGLGLLT 125 (525)
Q Consensus 46 ~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~~~~~l~~ 125 (525)
++..+...+....+.+.+|.++.+++|.+..+.+++.+.+.+...++.++.|+++||+ |||+++..+.++.+++..+..
T Consensus 2 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~l~~~~~~~~~~~~~~~ 80 (352)
T PF07690_consen 2 FLAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRF-GRRRVLIIGLLLFALGSLLLA 80 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCeeeEeehhhhhhhHHHHhh
Confidence 4556666777777777888788899999999999999999999999999999999998 999999999999888855555
Q ss_pred HhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhhHHHHhhhh
Q 045562 126 LSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWYFGMCMGT 205 (525)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~ 205 (525)
++.+ .+.+++.|++.|++.+...+...+++.|.+|+++ |++++++.+...++|.
T Consensus 81 ~~~~--------------------~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~~~~g~ 134 (352)
T PF07690_consen 81 FASN--------------------FWLLLIARFLLGIGSGFFSPASNALIADWFPPEE------RGRAFGILSAGFSLGS 134 (352)
T ss_dssp HHCC--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCC------HHHHHHHHHHHHHHHH
T ss_pred hhhh--------------------HHHHhhhccccccccccccccccccccccchhhh------hhhccccccchhhhhh
Confidence 5422 5689999999999999999999999999999988 9999999999999999
Q ss_pred HHHhhhhhhcccccchhhhHHHHHHHHHHHHHHHHhcccceeecCCCCCCchhhhHHHHHHHHHhccccCCchhhhHhhh
Q 045562 206 FVTLTVLNYIQDNLNWILGFGIPCILMVIALVVFLLGTKIYRYSLKGEEKSPFLRIGQVFVTAVRNWRITPSAIALEEEA 285 (525)
Q Consensus 206 ~~gp~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (525)
.++|.+++++.+++||++.|++.++..++..++.....++.++.++++ ++..+.
T Consensus 135 ~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~--~~~~~~------------------------ 188 (352)
T PF07690_consen 135 ILGPLLGGFLISYFGWRWAFLISAILSLIAAILFILFLPEPPPPRERE--SPKESE------------------------ 188 (352)
T ss_dssp HHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHHHHCCC---STTTT----SSTTTT------------------------
T ss_pred hcccchhhhhhhccccccccccccchhhhhhhhHhhhhhhcccccccc--cccccc------------------------
Confidence 999999999999999999999988887776554333332211111111 000000
Q ss_pred hCCCCCCCccchhhhhHHHhhcCCCCCCCcc-cchhhHHHHHHHHHHHHHHHHH-HHHHHHHhhccchhhhhhhccccCc
Q 045562 286 RGTLPHQSSEQFKFLNKALLASNGSKGYGKV-CSVGEVEEAKALLRLVPIWTTC-LVYAIVFAQSSTFFTKQGVTMDRSV 363 (525)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (525)
++. +.++.+ ++ ...+++.++......+.. ..+.......+. +..+....+
T Consensus 189 -------~~~---------------~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~--- 240 (352)
T PF07690_consen 189 -------SKK---------------PKPLKPGFK--SLFKNPVLWILLIAFFLFFFVFSGFSFFLPL-YLQEVLGFS--- 240 (352)
T ss_dssp ---------H---------------HHCCCH-CT--HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH-HCCHHHHCC---
T ss_pred -------ccc---------------ccccccccc--cccccchhhhhhhhhhHHHHHHHHhhcccch-hhhhccCCC---
Confidence 000 001111 11 122223222111111111 122221111111 111111111
Q ss_pred ccccccChhhhhhhhhHHHHHHHHhhhhhhhhhhhhhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCC
Q 045562 364 VADFQIPAASLQSFISLAIVLTIPIYDRIFVPIARTFTRKPAGITMLQRIGTGMFLSAASMTGATLVEMKRLKTAEEYGL 443 (525)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~l~~r~~~~~~~~~~~~~i~ig~~l~~i~~~~~~~~~~~~~~~~~~~g~ 443 (525)
+ ....+.+.....+..++..++.++ +.||+++| +...+......+..........
T Consensus 241 ~---~~~~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~----------- 295 (352)
T PF07690_consen 241 G---PSQAGLLFSIFGIVGIIGSLLAGR----LSDRFGRR-------RRLLIAILLLILGALGLLLLPF----------- 295 (352)
T ss_dssp T---HHHHHHHHHHHHHHHHHHHHHHHH----HHHHTTCH-------HHHHHHHHHHHHHHHHHCCSHH-----------
T ss_pred H---HHHHHHHHHHHHHHHHHHHHHHHH----HHHHcCcH-------HHHHHHHHHHHHHHHHHHHHHH-----------
Confidence 0 011222344444555555555555 56664432 4444444444444444333211
Q ss_pred cCCCCCCccchHHHHHHHHHHHHHHHHHHhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHHH
Q 045562 444 VDKPNVTIPMSVWWLIPQYALLGVSEAFTMVGLQEFFYDQVPTELRSVGLSLYLSIFGVGSFLSS 508 (525)
Q Consensus 444 ~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~ 508 (525)
..+..+.....++.|++.+...+...+++.+..|++.||++.|+.++...+|..+||
T Consensus 296 --------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 296 --------SSSPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp --------HCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 124556666778899999999999999999999999999999999999999999987
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.4e-23 Score=219.50 Aligned_cols=395 Identities=13% Similarity=0.081 Sum_probs=249.6
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHH
Q 045562 39 WRSALFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYV 118 (525)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~ 118 (525)
.+.++.+....+...+..+.+.+.+|.|.. ++|.+..+.+++.+.+.++..++.++.|+++||+ |||++++.+.++..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~~ 86 (471)
T PRK10504 9 RWQLWIVAFGFFMQSLDTTIVNTALPSMAQ-SLGESPLHMHMVIVSYVLTVAVMLPASGWLADRV-GVRNIFFTAIVLFT 86 (471)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-chHHHHHHHHHHHH
Confidence 346677778888888888888888988875 6999999999999999999999999999999999 99999999988888
Q ss_pred HHHHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhhH
Q 045562 119 LGLGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWY 198 (525)
Q Consensus 119 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 198 (525)
++.+++.+..+ .+.+++.|+++|++.+...|...+++.|.+|+++ |++++++.+
T Consensus 87 ~~~~~~~~~~~--------------------~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~ 140 (471)
T PRK10504 87 LGSLFCALSGT--------------------LNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQ------YMAAMTFVT 140 (471)
T ss_pred HHHHHHHHhCC--------------------HHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHH------HHHHHHHHH
Confidence 88877776543 6778899999999999999999999999999888 999999999
Q ss_pred HHHhhhhHHHhhhhhhcccccchhhhHHHHHHHHHHHHHHHHhcccceeecCCCCCCchhhhHHHHHHHHHhccccCCch
Q 045562 199 FGMCMGTFVTLTVLNYIQDNLNWILGFGIPCILMVIALVVFLLGTKIYRYSLKGEEKSPFLRIGQVFVTAVRNWRITPSA 278 (525)
Q Consensus 199 ~~~~~g~~~gp~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (525)
...++|..+||.+++++.++.||++.|.+......+..+......++.+.++.+ .|...............
T Consensus 141 ~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~~~r------~~~~~~~~~~~~~~~~~--- 211 (471)
T PRK10504 141 LPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLMLMPNYTMQTRR------FDLSGFLLLAVGMATLT--- 211 (471)
T ss_pred HHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCCccccCCC------CChHHHHHHHHHHHHHH---
Confidence 999999999999999999999999999988766655555444443332211111 11111110000000000
Q ss_pred hhhHhhhhCCCCCCCccchhhhhH-----H----------HhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 045562 279 IALEEEARGTLPHQSSEQFKFLNK-----A----------LLASNGSKGYGKVCSVGEVEEAKALLRLVPIWTTCLVYAI 343 (525)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~-----~----------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 343 (525)
+ ...+ .+...|... . .........+. ...+ ....+.+...+...+.....+.
T Consensus 212 ---~-~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-l~~~~~~~~~l~~~~~~~~~~~ 278 (471)
T PRK10504 212 ---L-ALDG------SKGLGLSPLAIAGLVAVGVVALLLYLLHARNNNRAL--FSLK-LFRTRTFSLGLAGSFAGRIGSG 278 (471)
T ss_pred ---H-HHhc------CCcCCcchHHHHHHHHHHHHHHHHHHHHHhcCCCCc--cCHH-HhcccchHHHHHHHHHHHHHHH
Confidence 0 0000 000000000 0 00000001111 0000 1112222222211111111111
Q ss_pred HHhhccchhhhhhhccccCcccccccChhhhhhhhhHHHHHHHHhhhhhhhhhhhhhccCCCCCCchHHHHHHHHHHHHH
Q 045562 344 VFAQSSTFFTKQGVTMDRSVVADFQIPAASLQSFISLAIVLTIPIYDRIFVPIARTFTRKPAGITMLQRIGTGMFLSAAS 423 (525)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~l~~r~~~~~~~~~~~~~i~ig~~l~~i~ 423 (525)
....+..++..+..+. .....+.+.....+..++..++.+ ++.||+++| +.+..+..+.++.
T Consensus 279 ~~~~~~~~~~~~~~g~-------~~~~~g~~~~~~~~~~~~~~~~~~----~l~~r~g~~-------~~~~~~~~~~~~~ 340 (471)
T PRK10504 279 MLPFMTPVFLQIGLGF-------SPFHAGLMMIPMVLGSMGMKRIVV----QVVNRFGYR-------RVLVATTLGLALV 340 (471)
T ss_pred HHHHHHHHHHHHHcCC-------CHHHHHHHHHHHHHHHHHHHHHHH----HHHHHcCch-------HHHHHHHHHHHHH
Confidence 1111222222111111 111112222222333333334444 467776554 6677777777776
Q ss_pred HHHHHHHHHHHHhhhhhcCCcCCCCCCccchHHHHHHHHHHHHHHHHHHhhhhHHHhhhccCchhHHHHHHHHHHHHHHH
Q 045562 424 MTGATLVEMKRLKTAEEYGLVDKPNVTIPMSVWWLIPQYALLGVSEAFTMVGLQEFFYDQVPTELRSVGLSLYLSIFGVG 503 (525)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg 503 (525)
......... ..+.+.+....++.|++.++..+..+....+.+|++.+|.++|++++...+|
T Consensus 341 ~~~~~~~~~-------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g 401 (471)
T PRK10504 341 SLLFMLVAL-------------------LGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLS 401 (471)
T ss_pred HHHHHhccc-------------------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHH
Confidence 655554210 1223334445677788888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhccC
Q 045562 504 SFLSSFLISAIENATGG 520 (525)
Q Consensus 504 ~~lg~~~~~~i~~~~~~ 520 (525)
+.+|+.+.|.+.+..|.
T Consensus 402 ~~ig~~i~g~ll~~~g~ 418 (471)
T PRK10504 402 MSIGVTIAGLLLGLFGQ 418 (471)
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 99999999999887764
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-22 Score=210.60 Aligned_cols=381 Identities=15% Similarity=0.113 Sum_probs=226.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHHH
Q 045562 40 RSALFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVL 119 (525)
Q Consensus 40 ~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~~ 119 (525)
+.........+......+... ...+++.+++|.+..+.+++.+...++..++.++.|+++||+ |||+.+..+.++..+
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~~ 94 (398)
T TIGR00895 17 RAIILSFLIMLMDGYDLAAMG-FAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRI-GRKRVLLWSILLFSV 94 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-hhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHh-hhHHHHHHHHHHHHH
Confidence 333444444444444444443 444456678999999999999999999999999999999999 999999999988888
Q ss_pred HHHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhhHH
Q 045562 120 GLGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWYF 199 (525)
Q Consensus 120 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 199 (525)
+.+++.+..+ .+.+++.+++.|++.+...+...+++.|.+|+++ |++++++.+.
T Consensus 95 ~~~~~~~~~~--------------------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~ 148 (398)
T TIGR00895 95 FTLLCALATN--------------------VTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRF------RGTAVGLMFC 148 (398)
T ss_pred HHHHHHHccc--------------------hHHHHHHHHHHhcccccchhhHHHHHHHHcCHHh------hchhHhhHhh
Confidence 8877776643 6778889999999999999999999999999888 9999999999
Q ss_pred HHhhhhHHHhhhhhhcccccchhhhHHHHHHHHHHHHHHHHhcccceeecCCCCCCchhhhHHHHHHHHHhccccCCchh
Q 045562 200 GMCMGTFVTLTVLNYIQDNLNWILGFGIPCILMVIALVVFLLGTKIYRYSLKGEEKSPFLRIGQVFVTAVRNWRITPSAI 279 (525)
Q Consensus 200 ~~~~g~~~gp~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (525)
...+|..++|.+++++.++.||+..|++.++..++..+..+...++.+....+++.+...+..+ ..... . ..+..
T Consensus 149 ~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~-~~~~~ 223 (398)
T TIGR00895 149 GYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSKRPETVRRIVN---AIAPQ-M-QAEAQ 223 (398)
T ss_pred HHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHHHHHHHHhCCCCChHHHhcCHHHHHHHHH---HHHHh-c-ccccc
Confidence 9999999999999999999999999998864444444433333332211100100000000000 00000 0 00000
Q ss_pred hhHhhhhCCCCCCCccchhhhhHHHhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhcc
Q 045562 280 ALEEEARGTLPHQSSEQFKFLNKALLASNGSKGYGKVCSVGEVEEAKALLRLVPIWTTCLVYAIVFAQSSTFFTKQGVTM 359 (525)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (525)
.....++.+...+ +..++...+ ....++.........+....++......+ .+.. ..
T Consensus 224 -------~~~~~~~~~~~~~-----------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~ 280 (398)
T TIGR00895 224 -------SALPEQKATQGTK-----------RSVFKALFQ-GKTARITVLLWLLYFMLLVGVYFLTNWLP-KLMV---EL 280 (398)
T ss_pred -------ccccccccccchh-----------hHHHHHHhc-chhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH---Hc
Confidence 0000000000000 000000000 00011111111111111111111111111 1111 11
Q ss_pred ccCcccccccChhhhhhhhhHHHHHHHHhhhhhhhhhhhhhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 045562 360 DRSVVADFQIPAASLQSFISLAIVLTIPIYDRIFVPIARTFTRKPAGITMLQRIGTGMFLSAASMTGATLVEMKRLKTAE 439 (525)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~l~~r~~~~~~~~~~~~~i~ig~~l~~i~~~~~~~~~~~~~~~~~ 439 (525)
+. .....+.+.....+..++..++.+. +.||+++| .+..+..+.++........
T Consensus 281 ----g~-~~~~~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~--------~~~~~~~~~~~~~~~~~~~--------- 334 (398)
T TIGR00895 281 ----GF-SLSLAATGGALFNFGGVIGSIIFGW----LADRLGPR--------VTALLLLLGAVFAVLVGST--------- 334 (398)
T ss_pred ----CC-CHHHHHHHHHHHHHHHHHHHHHHHH----HHhhcchH--------HHHHHHHHHHHHHHHHHHH---------
Confidence 11 1111223334444445555555544 66775432 2333333333333222221
Q ss_pred hcCCcCCCCCCccchHHHHHHHHHHHHHHHHHHhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045562 440 EYGLVDKPNVTIPMSVWWLIPQYALLGVSEAFTMVGLQEFFYDQVPTELRSVGLSLYLSIFGVGSFLSSFLISAI 514 (525)
Q Consensus 440 ~~g~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~~~~~~i 514 (525)
..+.+......++.+++.+...+...+++.+..|++.||++.|+.+....+|..+||.+.|.+
T Consensus 335 ------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l 397 (398)
T TIGR00895 335 ------------LFSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL 397 (398)
T ss_pred ------------hhCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence 124455566778889999999999999999999999999999999999999999999999875
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.2e-23 Score=221.67 Aligned_cols=397 Identities=13% Similarity=0.106 Sum_probs=248.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHHHHH
Q 045562 42 ALFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVLGL 121 (525)
Q Consensus 42 ~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~~~~ 121 (525)
...+....+...+....+...+| ++.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||++++.+.++..++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~ 81 (485)
T TIGR00711 4 TIVLMLGTFMAVLDSTIVNVAIP-TIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRF-GTRRLFLISTFAFTLGS 81 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHh-CcHHHHHHHHHHHHHHH
Confidence 34444555555555555555555 45668999999999999999999999999999999999 99999999999999998
Q ss_pred HHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhhHHHH
Q 045562 122 GLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWYFGM 201 (525)
Q Consensus 122 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 201 (525)
+++....+ ...+++.|+++|++.+...+...+++.|.+|+++ |++++++++...
T Consensus 82 ~~~~~~~~--------------------~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~ 135 (485)
T TIGR00711 82 LLCGVAPN--------------------LELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEK------RGRAMAIWGLTV 135 (485)
T ss_pred HHHhCcCC--------------------HHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHH------HHHHHHHHHHHH
Confidence 88887644 7889999999999999999999999999999888 999999999999
Q ss_pred hhhhHHHhhhhhhcccccchhhhHHHHHHHHHHHHHHHHhcccceeecCCCCCCchhhhHHHHHHHHHhccccCCchhhh
Q 045562 202 CMGTFVTLTVLNYIQDNLNWILGFGIPCILMVIALVVFLLGTKIYRYSLKGEEKSPFLRIGQVFVTAVRNWRITPSAIAL 281 (525)
Q Consensus 202 ~~g~~~gp~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (525)
.+|..+||.+++++.++.||++.|++.+...++..+..+...++.++. ++ ++. |...............
T Consensus 136 ~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~-d~~g~~l~~~~~~~~~------ 204 (485)
T TIGR00711 136 LVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVAFFILPRDKPA--AS--ENF-DFLGLLLLSVGLGSLL------ 204 (485)
T ss_pred HHHhhhhhccHhHhccCcCceehhhhhhHHHHHHHHHHHHHcCCcccc--cc--CCC-cHHHHHHHHHHHHHHH------
Confidence 999999999999999999999999988776665555444443332111 11 111 1111111000000000
Q ss_pred HhhhhCCCCCCCccchhhhhH-------HH--hhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccchh
Q 045562 282 EEEARGTLPHQSSEQFKFLNK-------AL--LASNGSKGYGKVCSVGEVEEAKALLRLVPIWTTCLVYAIVFAQSSTFF 352 (525)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~-------~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 352 (525)
.....+...-...+....... .. ......+.|..+. +..++++.....+...+....++......+.++
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 282 (485)
T TIGR00711 205 YGLSEGPERGWFDSNEILILSITGLVAIIAFVVWELTDDNPLVDL--RLFKYRNFTIGCVYMSLLGLGLYGSFYLLPLYL 282 (485)
T ss_pred HHHhhCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHcCCCCccCH--HHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000000000000000000000 00 0000111121111 011111111111111122222222222122222
Q ss_pred hhhhhccccCcccccccChhhhhhhhhHHHHHHHHhhhhhhhhhhhhhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHH
Q 045562 353 TKQGVTMDRSVVADFQIPAASLQSFISLAIVLTIPIYDRIFVPIARTFTRKPAGITMLQRIGTGMFLSAASMTGATLVEM 432 (525)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~l~~r~~~~~~~~~~~~~i~ig~~l~~i~~~~~~~~~~ 432 (525)
.. ..+. .....+.+.....+..++..++.++ +.||.++| +.+.+|..+.+++..+..+..
T Consensus 283 ~~-------~~g~-s~~~~g~~~~~~~~~~~~~~~~~g~----l~~r~~~~-------~~~~~g~~~~~~~~~~~~~~~- 342 (485)
T TIGR00711 283 QQ-------VLGY-TALQAGLHILPVGLAPMLSSPIAGR----MGDKIDPR-------KLVTIGLILYAVGFYWRAFTF- 342 (485)
T ss_pred HH-------hcCC-CHHHHHHHHHHHHHHHHHHHHHHHH----HHhhcCcH-------HHHHHHHHHHHHHHHHHhccC-
Confidence 11 1111 1112233444455556666666555 56775443 667778888777776665210
Q ss_pred HHHhhhhhcCCcCCCCCCccchHHHHHHHHHHHHHHHHHHhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 045562 433 KRLKTAEEYGLVDKPNVTIPMSVWWLIPQYALLGVSEAFTMVGLQEFFYDQVPTELRSVGLSLYLSIFGVGSFLSSFLIS 512 (525)
Q Consensus 433 ~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~~~~~ 512 (525)
++ ..+.+.+....++.|++.+...++......+..|+++||+++|++++.+.+|+.+|+.+.+
T Consensus 343 -------------~~----~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g 405 (485)
T TIGR00711 343 -------------TP----DTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALIT 405 (485)
T ss_pred -------------CC----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 2355566667888999999988888888889999999999999999999999999999999
Q ss_pred Hhhh
Q 045562 513 AIEN 516 (525)
Q Consensus 513 ~i~~ 516 (525)
.+.+
T Consensus 406 ~~~~ 409 (485)
T TIGR00711 406 TILT 409 (485)
T ss_pred HHHH
Confidence 8875
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-22 Score=213.10 Aligned_cols=180 Identities=11% Similarity=0.057 Sum_probs=148.4
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHH
Q 045562 38 GWRSALFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIY 117 (525)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~ 117 (525)
+|+.++.+.+..++.......+ ++....+++++|.+..+.+++.+.+.++..+++++.|+++||+ |||+++..++++.
T Consensus 6 ~~~~~~~~~~~~~~~~~d~~~~-~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-G~r~~~~~~~~~~ 83 (412)
T TIGR02332 6 FRRLIIFLFILFIFSFLDRINI-GFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAII-GARRWIAGIMVLW 83 (412)
T ss_pred hhHHHHHHHHHHHHHHhhhhhH-HHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHh-ChHHHHHHHHHHH
Confidence 3444444445445444444444 4555588999999999999999999999999999999999999 9999999999999
Q ss_pred HHHHHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhh
Q 045562 118 VLGLGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWW 197 (525)
Q Consensus 118 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 197 (525)
.++..+++++.+ .+.+++.|++.|++.+...|...+++.|++|+++ |+++++++
T Consensus 84 ~~~~~~~~~~~~--------------------~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------rg~~~~~~ 137 (412)
T TIGR02332 84 GIASTATMFATG--------------------PESLYLLRILVGIAEAGFLPGILLYLTFWFPAYF------RARANALF 137 (412)
T ss_pred HHHHHHHHHhcC--------------------HHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHH------HHHHHHHH
Confidence 999998888754 6889999999999999999999999999999988 99999999
Q ss_pred HHHHhhhhHHHhhhhhhccc------ccchhhhHHHHHHHHHHHHHHHHhcccc
Q 045562 198 YFGMCMGTFVTLTVLNYIQD------NLNWILGFGIPCILMVIALVVFLLGTKI 245 (525)
Q Consensus 198 ~~~~~~g~~~gp~~~~~l~~------~~g~~~~f~~~~~~~~~~~~~~~~~~~~ 245 (525)
+....+|..++|.+++++.+ ..|||+.|++.++..++..++.++..++
T Consensus 138 ~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~ 191 (412)
T TIGR02332 138 MIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDD 191 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCC
Confidence 99999999999999998763 4699999999776665544444444443
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.7e-22 Score=206.93 Aligned_cols=347 Identities=12% Similarity=0.078 Sum_probs=221.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHH-HHHHHHHHHHHH
Q 045562 46 IGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIII-ASLIYVLGLGLL 124 (525)
Q Consensus 46 ~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~-~~~~~~~~~~l~ 124 (525)
++..++..++.....+.+|.|+++++|.|..+.+++.+.+.+...+..++.|+++||+ ||||.++. +.++..++.+++
T Consensus 3 ~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~-g~r~~~~~~~~~~~~~~~~~~ 81 (375)
T TIGR00899 3 LLVAFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQ-GDRKGLILFCCLLAALACLLF 81 (375)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHHHHH
Confidence 3456777888888889999999999999999999999999999999999999999999 98887654 455555666666
Q ss_pred HHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCccccccccee--hhhhHHHHh
Q 045562 125 TLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSF--FNWWYFGMC 202 (525)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~--~~~~~~~~~ 202 (525)
..+++ ++.+++.|++++.+.+...|...++..|..|+++ |.++ .+......+
T Consensus 82 ~~~~~--------------------~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~ 135 (375)
T TIGR00899 82 AWNRN--------------------YFLLLVLGVLLSSFASTANPQLFALAREHADRTG------REAVMFSSVMRAQIS 135 (375)
T ss_pred Hhcch--------------------HHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcc------hhhHHHHHHHHHHHh
Confidence 65543 6777788888888878788888888888887665 5544 577777889
Q ss_pred hhhHHHhhhhhhcccccchhhhHHHHHHHHHHHHHHHHhcccceeecCCCCCCchhhhHHHHHHHHHhccccCCchhhhH
Q 045562 203 MGTFVTLTVLNYIQDNLNWILGFGIPCILMVIALVVFLLGTKIYRYSLKGEEKSPFLRIGQVFVTAVRNWRITPSAIALE 282 (525)
Q Consensus 203 ~g~~~gp~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (525)
+|..+||.+++++.+.+||++.|++.++..++..+..+...++.++.++++ +...
T Consensus 136 ~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~----------------------- 190 (375)
T TIGR00899 136 LAWVIGPPLAFWLALGFGFTVMFLTAALAFVLCGVLVWLFLPSYPRGAPGA--LTRL----------------------- 190 (375)
T ss_pred HHHHHhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhCCCcccCcccc--cCcc-----------------------
Confidence 999999999999999899999999988776665555444333322111110 0000
Q ss_pred hhhhCCCCCCCccchhhhhHHHhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhccccC
Q 045562 283 EEARGTLPHQSSEQFKFLNKALLASNGSKGYGKVCSVGEVEEAKALLRLVPIWTTCLVYAIVFAQSSTFFTKQGVTMDRS 362 (525)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (525)
++ +.. .+ .++.+.+.. . .++...........++.++.. ....+
T Consensus 191 ---------------~~-----------~~~---~~---~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~-~~g~~-- 233 (375)
T TIGR00899 191 ---------------EV-----------RGL---LA---SRDTRLLFV-A-CTLMWGCNILYIINMPLLIIH-ELGLP-- 233 (375)
T ss_pred ---------------hh-----------hhh---hc---CcchHHHHH-H-HHHHHHHHHHHHhhhHHHHHH-HcCCC--
Confidence 00 000 00 000111111 1 111111111111122222211 11111
Q ss_pred cccccccChhhhhhhhhHHHHHHHHhhhhhhhhhhhhhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcC
Q 045562 363 VVADFQIPAASLQSFISLAIVLTIPIYDRIFVPIARTFTRKPAGITMLQRIGTGMFLSAASMTGATLVEMKRLKTAEEYG 442 (525)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~l~~r~~~~~~~~~~~~~i~ig~~l~~i~~~~~~~~~~~~~~~~~~~g 442 (525)
....+.+.....+..+...++.+ ++.||+++| +.+.++.++..+.+......
T Consensus 234 -----~~~~g~~~~~~~~~~~~~~~~~g----~l~~r~g~~-------~~~~~~~~~~~~~~~~~~~~------------ 285 (375)
T TIGR00899 234 -----DKLAGLMMGTAAGLEIPFMLLAG----YLIKRFGKR-------RLMLLAALAGVAFYTGLAAD------------ 285 (375)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHhHH----HHHHHhcch-------hHHHHHHHHHHHHHHHHHHH------------
Confidence 11112222222233333334433 467776654 45555555544444333321
Q ss_pred CcCCCCCCccchHHHHHHHHHHHHHHHHHHhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC
Q 045562 443 LVDKPNVTIPMSVWWLIPQYALLGVSEAFTMVGLQEFFYDQVPTELRSVGLSLYLSIFGVGSFLSSFLISAIENATGG 520 (525)
Q Consensus 443 ~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~~~~~~i~~~~~~ 520 (525)
.+.+.+....++.+++.+...+..+.+..+..|++ ++.++|+++....+|..+++.+.|.+.+..|-
T Consensus 286 ----------~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~ 352 (375)
T TIGR00899 286 ----------NSLWALLMLQLLNAIFIGILAGIGMLYFQDLMPGR-AGAATTLYTNTGRVGWIIAGSVGGILAERWSY 352 (375)
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 24455555667778888888888888999988875 67999999999999999999999999887653
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.92 E-value=3e-22 Score=221.26 Aligned_cols=157 Identities=15% Similarity=0.139 Sum_probs=132.9
Q ss_pred HHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhccCCCCccC
Q 045562 60 SSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVLGLGLLTLSAVLLSGSTSECQ 139 (525)
Q Consensus 60 ~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 139 (525)
.+.+.+++.+++|.+..+.+++.+++.++..++.+++|+++||+ |||+++++++++.+++.++++++.+
T Consensus 186 is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~-GRR~~lii~lil~~i~~ll~afa~s---------- 254 (742)
T TIGR01299 186 VGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKL-GRKQCLLICLSVNGFFAFFSSFVQG---------- 254 (742)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHHhh----------
Confidence 34445567778999999999999999999999999999999999 9999999999988888888887754
Q ss_pred CCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhhHHHHhhhhHHHhhhhhhcccc-
Q 045562 140 NTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWYFGMCMGTFVTLTVLNYIQDN- 218 (525)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l~~~- 218 (525)
++.++++|++.|++.|+..|...++++|.+|++. |++.++++.....+|.++++.++.++...
T Consensus 255 ----------~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~------Rg~~~g~~~~~~~iG~ila~~la~~il~~~ 318 (742)
T TIGR01299 255 ----------YGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEK------RGEHLSWLCMFWMIGGIYAAAMAWAIIPHY 318 (742)
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 7889999999999999999999999999999988 99999999999999999998877554432
Q ss_pred ------------cchhhhHHHHHHHHHHHHHHHHhcc
Q 045562 219 ------------LNWILGFGIPCILMVIALVVFLLGT 243 (525)
Q Consensus 219 ------------~g~~~~f~~~~~~~~~~~~~~~~~~ 243 (525)
.+||+.|++.++..++.++..++.+
T Consensus 319 G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lP 355 (742)
T TIGR01299 319 GWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMP 355 (742)
T ss_pred cchhccccccccccHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3689988887776666555544443
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.8e-23 Score=212.89 Aligned_cols=357 Identities=15% Similarity=0.112 Sum_probs=236.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHH-----HHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHH
Q 045562 40 RSALFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTAT-----AAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIAS 114 (525)
Q Consensus 40 ~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~-----~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~ 114 (525)
|+...+....++..+++....+.+|.|++ ++|.+..+ .+++.+.+.+...++.++.|+++||+ |||+++..+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~ 91 (408)
T PRK09874 14 RNLTVAWLGCFLTGAAFSLVMPFLPLYVE-QLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRK-GRKIMLLRSA 91 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHH-HhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-CcHHHHHHHH
Confidence 34556667777888888888899999886 58888654 47888889999999999999999999 9999999998
Q ss_pred HHHHHHHHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceeh
Q 045562 115 LIYVLGLGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFF 194 (525)
Q Consensus 115 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 194 (525)
++..++.+++....+ .+.+++.|++.|++.+ ..+...+++.|.+|+++ |+++.
T Consensus 92 ~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~------~~~~~ 144 (408)
T PRK09874 92 LGMGIVMVLMGLAQN--------------------IWQFLILRALLGLLGG-FVPNANALIATQVPRNK------SGWAL 144 (408)
T ss_pred HHHHHHHHHHHHHhh--------------------HHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhh------hhHHH
Confidence 888888877776543 6788899999999865 46777888999999888 99999
Q ss_pred hhhHHHHhhhhHHHhhhhhhcccccchhhhHHHHHHHHHHHHHHHHhcccceeecCCCCCCchhhhHHHHHHHHHhcccc
Q 045562 195 NWWYFGMCMGTFVTLTVLNYIQDNLNWILGFGIPCILMVIALVVFLLGTKIYRYSLKGEEKSPFLRIGQVFVTAVRNWRI 274 (525)
Q Consensus 195 ~~~~~~~~~g~~~gp~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (525)
++.+....+|..++|.+++.+.+.++|+..|++.++..++..+..+...++.++ +++ ++.....+.
T Consensus 145 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~---------- 210 (408)
T PRK09874 145 GTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITASVLFLCFLVTLFCIRENFQ--PVS--KKEMLHMRE---------- 210 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhccCcc--ccc--chhhhHHHH----------
Confidence 999999999999999999999998999999998887766655544443332111 111 000000000
Q ss_pred CCchhhhHhhhhCCCCCCCccchhhhhHHHhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhh
Q 045562 275 TPSAIALEEEARGTLPHQSSEQFKFLNKALLASNGSKGYGKVCSVGEVEEAKALLRLVPIWTTCLVYAIVFAQSSTFFTK 354 (525)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (525)
..+ ..++++.++..... ..............+..
T Consensus 211 ------------------------~~~-------------------~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 244 (408)
T PRK09874 211 ------------------------VVT-------------------SLKNPKLVLSLFVT---TLIIQVATGSIAPILTL 244 (408)
T ss_pred ------------------------HHH-------------------hCcCCchHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 000 00001111111111 11111111111111211
Q ss_pred hhhccccCcccccccChhhhhhhhhHHHHHHHHhhhhhhhhhhhhhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 045562 355 QGVTMDRSVVADFQIPAASLQSFISLAIVLTIPIYDRIFVPIARTFTRKPAGITMLQRIGTGMFLSAASMTGATLVEMKR 434 (525)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~l~~r~~~~~~~~~~~~~i~ig~~l~~i~~~~~~~~~~~~ 434 (525)
+.......... .....+.+.....+..++..++.++ +.||+++| +.+..+..+.+++.+.....
T Consensus 245 ~~~~~~~~~~~-~~~~~g~~~~~~~l~~~~~~~~~g~----l~dr~g~~-------~~~~~~~~~~~~~~~~~~~~---- 308 (408)
T PRK09874 245 YVRELAGNVSN-IAFISGMIASVPGVAALLSAPRLGK----LGDRIGPE-------KILITALIFSVLLLIPMSFV---- 308 (408)
T ss_pred HHHHHhccchH-HHHHHHHHHHHHHHHHHHHHHHHHH----HHhccccc-------hhHHHHHHHHHHHHHHHHHh----
Confidence 11110000000 0000111222333444444555444 67776554 55666666666655554432
Q ss_pred HhhhhhcCCcCCCCCCccchHHHHHHHHHHHHHHHHHHhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045562 435 LKTAEEYGLVDKPNVTIPMSVWWLIPQYALLGVSEAFTMVGLQEFFYDQVPTELRSVGLSLYLSIFGVGSFLSSFLISAI 514 (525)
Q Consensus 435 ~~~~~~~g~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~~~~~~i 514 (525)
.+.+.+....++.|++.+...+...+.+.+..|++.+|+.+++++....+|..+|+.+.|.+
T Consensus 309 ------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l 370 (408)
T PRK09874 309 ------------------QTPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAI 370 (408)
T ss_pred ------------------ccHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHH
Confidence 24555666777889999999999999999999999999999999999999999999999999
Q ss_pred hhhcc
Q 045562 515 ENATG 519 (525)
Q Consensus 515 ~~~~~ 519 (525)
.+..|
T Consensus 371 ~~~~g 375 (408)
T PRK09874 371 SANYG 375 (408)
T ss_pred Hhhcc
Confidence 87765
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.1e-22 Score=208.33 Aligned_cols=355 Identities=13% Similarity=0.111 Sum_probs=231.5
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHH
Q 045562 39 WRSALFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYV 118 (525)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~ 118 (525)
++.++.+....+..........+.+|. +.+++|.|..+.+++.+.+.++..++.++.|+++||+ |||+++..+.++..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~~ 81 (385)
T TIGR00710 4 KAFALLLGCLSILGPLGIDMYLPAFPE-IAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRY-GRRPVLLLGLFIFA 81 (385)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcccHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhc-CChHHHHHHHHHHH
Confidence 344555555555666666666666765 4568999999999999999999999999999999999 99999999999888
Q ss_pred HHHHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhhH
Q 045562 119 LGLGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWY 198 (525)
Q Consensus 119 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 198 (525)
++.+++...++ .+.+++.|++.|++.+...+...+++.|.+|+++ |++++++.+
T Consensus 82 ~~~~~~~~~~~--------------------~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~ 135 (385)
T TIGR00710 82 LSSLGLALSNN--------------------IETLLVLRFVQAFGASAGSVISQALVRDIYPGEE------LSRIYSILM 135 (385)
T ss_pred HHHHHHHHHcc--------------------HHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHH------HHHHHHHHH
Confidence 88888877644 6788899999999999999999999999999888 999999999
Q ss_pred HHHhhhhHHHhhhhhhcccccchhhhHHHHHHHHHHHHHHHHhcccceeecCCCCCCchhhhHHHHHHHHHhccccCCch
Q 045562 199 FGMCMGTFVTLTVLNYIQDNLNWILGFGIPCILMVIALVVFLLGTKIYRYSLKGEEKSPFLRIGQVFVTAVRNWRITPSA 278 (525)
Q Consensus 199 ~~~~~g~~~gp~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (525)
....+|..++|.+++++.++++|+..|++.++..++..+..+...++.++.+++ +...+..+.
T Consensus 136 ~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-------------- 198 (385)
T TIGR00710 136 PVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFFILPETLPYEAR---IQISTYFET-------------- 198 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCCCCCccc---CCHHHHHHH--------------
Confidence 999999999999999999989999999887776665555544443332111000 000000000
Q ss_pred hhhHhhhhCCCCCCCccchhhhhHHHhhcCCCCCCCcccchhhHHHHHHHHHHHHH-HHHHHHHHHHHhhccchhhhhhh
Q 045562 279 IALEEEARGTLPHQSSEQFKFLNKALLASNGSKGYGKVCSVGEVEEAKALLRLVPI-WTTCLVYAIVFAQSSTFFTKQGV 357 (525)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 357 (525)
.. ...+.++++..... ......++ .+......+..+..
T Consensus 199 --------------------------------------~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 237 (385)
T TIGR00710 199 --------------------------------------FL--LLLKSKMFWGYALIYGASFGGFF-AFFSGAPFVYIDIM 237 (385)
T ss_pred --------------------------------------HH--HHHcCchhHHHHHHHHHHHHHHH-HHHHcChHHHHHHc
Confidence 00 00111111111111 11111111 11111111111111
Q ss_pred ccccCcccccccChhhhhhhhhHHHHHHHHhhhhhhhhhhhhhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 045562 358 TMDRSVVADFQIPAASLQSFISLAIVLTIPIYDRIFVPIARTFTRKPAGITMLQRIGTGMFLSAASMTGATLVEMKRLKT 437 (525)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~l~~r~~~~~~~~~~~~~i~ig~~l~~i~~~~~~~~~~~~~~~ 437 (525)
..+ ....+.+.....+..++..++.++ +.||+++| +.+..+..+..++..+.......
T Consensus 238 g~~-------~~~~g~~~~~~~~~~~~~~~~~g~----l~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~---- 295 (385)
T TIGR00710 238 GVS-------PSVFGLLFALNIIAMIFGGFLNGR----FIKKWGAK-------SLLRMGLILFAVSAVLLEITAIL---- 295 (385)
T ss_pred CCC-------HHHHHHHHHHHHHHHHHHHHHHHH----HHHhcCHH-------HHHHHHHHHHHHHHHHHHHHHHh----
Confidence 111 111223344445555555666555 56665443 66666777777666655543210
Q ss_pred hhhcCCcCCCCCCccchHHHHHHHHHHHHHHHHHHhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 045562 438 AEEYGLVDKPNVTIPMSVWWLIPQYALLGVSEAFTMVGLQEFFYDQVPTELRSVGLSLYLSIFGVGSFLSSFLISAIE 515 (525)
Q Consensus 438 ~~~~g~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~~~~~~i~ 515 (525)
. ..+.+.+....++.+++.+...+....+..+..| +.+|+++++++.....++.+.+.+.+.+.
T Consensus 296 ----~---------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~~~~ 359 (385)
T TIGR00710 296 ----G---------LGSWAMIIGPMMFVGIGNSMISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVSLIH 359 (385)
T ss_pred ----c---------cchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 0 1233444556677889899889998888888877 57999999999887765555555555444
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.6e-22 Score=208.80 Aligned_cols=338 Identities=11% Similarity=-0.002 Sum_probs=207.2
Q ss_pred HHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhc
Q 045562 52 ERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVLGLGLLTLSAVLL 131 (525)
Q Consensus 52 ~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~~~~~l~~~~~~~~ 131 (525)
++...+.+.+.+|. +++++|.|..+.+++.+.+.++..+++++.|+++||+ |||+++..+......+........
T Consensus 3 ~~~~~~~~~~~lp~-i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~~~~~~~~~~--- 77 (368)
T TIGR00903 3 SQAIWVTFSPVLSL-VAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRA-FKRWFLFGSLATFAAAAGRLLDPF--- 77 (368)
T ss_pred hhHHHHHHHhhHHH-HHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cchHHHHHHHHHHHHHHHHHHHhc---
Confidence 34444445555654 5668999999999999999999999999999999999 999987655544444332222212
Q ss_pred cCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhhHHHHhhhhHHHhhh
Q 045562 132 SGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWYFGMCMGTFVTLTV 211 (525)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~ 211 (525)
++..+++.|+++|++.+. .+.....++|++|+++ |++++++.+.+..+|..+++++
T Consensus 78 -----------------~~~~l~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~------r~~a~~~~~~~~~lG~~l~~~~ 133 (368)
T TIGR00903 78 -----------------NYEWLLACQLLAALGQPF-LLNAFAPAASQIREER------RDLVISLLSFAMYLGIIFALAA 133 (368)
T ss_pred -----------------cHHHHHHHHHHHHhHhHH-HHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHH
Confidence 278899999999999986 4556666799999888 9999999999999999999999
Q ss_pred hhhcccccchhhhHHHHHHHHHHHHHHHHhcccceeecCCCCCCchhhhHHHHHHHHHhccccCCchhhhHhhhhCCCCC
Q 045562 212 LNYIQDNLNWILGFGIPCILMVIALVVFLLGTKIYRYSLKGEEKSPFLRIGQVFVTAVRNWRITPSAIALEEEARGTLPH 291 (525)
Q Consensus 212 ~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (525)
++++.+++|||..|++.+++.++..+.++...++.++.+++. ....+..+
T Consensus 134 ~~~l~~~~gWr~~f~~~~~l~~~~~~~~~~~lp~~p~~~~~~--~~~~~~~~---------------------------- 183 (368)
T TIGR00903 134 GLKIYTAGGLQLLIIPIAAVAAAGIILVLAALPALPFQAAEG--FGFKDAVK---------------------------- 183 (368)
T ss_pred HHHHHHccchHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCC--cchHHHHH----------------------------
Confidence 999999999999999866665554444443333221111110 00000000
Q ss_pred CCccchhhhhHHHhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhccccCcccccccCh
Q 045562 292 QSSEQFKFLNKALLASNGSKGYGKVCSVGEVEEAKALLRLVPIWTTCLVYAIVFAQSSTFFTKQGVTMDRSVVADFQIPA 371 (525)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (525)
++++ ..+++..........+....++....+.++++... ..+. ..
T Consensus 184 ---------------------~~~~----ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~L~~~--g~s~--------~~ 228 (368)
T TIGR00903 184 ---------------------EFGA----LAGRKDLWIIGAILGFGVALFDNLAIWLEAALRPA--GLED--------IA 228 (368)
T ss_pred ---------------------HHHH----HHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCh--------HH
Confidence 0000 01112222222223334444555555556655321 1111 11
Q ss_pred hhhhhhhhHHHHHHHHhhhhhhhhhhhhhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCcCCCCCCc
Q 045562 372 ASLQSFISLAIVLTIPIYDRIFVPIARTFTRKPAGITMLQRIGTGMFLSAASMTGATLVEMKRLKTAEEYGLVDKPNVTI 451 (525)
Q Consensus 372 ~~~~~~~~~~~i~~~~l~~~~~~~l~~r~~~~~~~~~~~~~i~ig~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 451 (525)
+.......+...+.. . .+.||..||+ .+...+....++.++........
T Consensus 229 ~~~~~l~~~~g~~g~---~----~~~d~~~r~~---~r~~~~~~~~~~~a~~~~~~~~~--------------------- 277 (368)
T TIGR00903 229 GDAVALAILAGLIGV---A----VIPDRVARAG---LRSIYIRAAALLIAAFFLALAFE--------------------- 277 (368)
T ss_pred HHHHHHHHHHHHHHH---H----HhhHHhhhhh---hHHHHHHHHHHHHHHHHHHHHHc---------------------
Confidence 112222122222221 1 2445543321 11111222333334433333321
Q ss_pred cchHHHHHHHHHHHHHHHHHHhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 045562 452 PMSVWWLIPQYALLGVSEAFTMVGLQEFFYDQVPTELRSVGLSLYLSIFGVGSFLSSFLISAIE 515 (525)
Q Consensus 452 ~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~~~~~~i~ 515 (525)
.+.+..+....+.+++.....+..+++..|..|++.||+++|+.+....+|+.+++.+.+.+.
T Consensus 278 -~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~ 340 (368)
T TIGR00903 278 -LNRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFI 340 (368)
T ss_pred -cccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHh
Confidence 123333444555666666677778899999999999999999999999999999999988665
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.5e-22 Score=213.10 Aligned_cols=166 Identities=16% Similarity=0.238 Sum_probs=143.8
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHH
Q 045562 38 GWRSALFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIY 117 (525)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~ 117 (525)
+++......+..+...+..+.....+ .++++++|.|..+.+++.+.+.++..++.++.|+++||+ |||+++..+.++.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~-g~r~~l~~~~~~~ 93 (426)
T PRK12307 16 QKNALFSAWLGYVFDGFDFMLIFYIM-YLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKF-GRKPLMMWSIVAY 93 (426)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHH
Confidence 34555666666666666666554444 467789999999999999999999999999999999999 9999999999999
Q ss_pred HHHHHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhh
Q 045562 118 VLGLGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWW 197 (525)
Q Consensus 118 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 197 (525)
.++..++.++.+ .+.+++.|++.|++.+...+...+++.|.+|+++ |+++.++.
T Consensus 94 ~~~~~~~~~~~~--------------------~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~------r~~~~~~~ 147 (426)
T PRK12307 94 SVGTGLSGLASG--------------------VIMLTLSRFIVGMGMAGEYACASTYAVESWPKHL------KSKASAFL 147 (426)
T ss_pred HHHHHHHHHHhH--------------------HHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhH------hhHhhhHH
Confidence 999888888754 7889999999999999999999999999999998 99999999
Q ss_pred HHHHhhhhHHHhhhhhhcccccchhhhHHHHHHH
Q 045562 198 YFGMCMGTFVTLTVLNYIQDNLNWILGFGIPCIL 231 (525)
Q Consensus 198 ~~~~~~g~~~gp~~~~~l~~~~g~~~~f~~~~~~ 231 (525)
+.+..+|..++|.+.+.+.+.+||++.|++.++.
T Consensus 148 ~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~~~~ 181 (426)
T PRK12307 148 VSGFGIGNIIAAYFMPSFAEAYGWRAAFFVGLLP 181 (426)
T ss_pred HHHHhHHHHHHHHHHHHHcccCCHHHHHHHHHHH
Confidence 9999999999999999999989999999875543
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.91 E-value=8e-23 Score=209.96 Aligned_cols=345 Identities=12% Similarity=0.087 Sum_probs=223.8
Q ss_pred HHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 045562 53 RFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVLGLGLLTLSAVLLS 132 (525)
Q Consensus 53 ~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~~~~~l~~~~~~~~~ 132 (525)
....|.. +.+.+++.+++|.|..+.+++.+.+.++..++.++.|+++||+ |||+++..+.++..++.+++.++.+
T Consensus 16 ~~~~~~~-~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~-G~r~~~~~~~~~~~~~~~~~~~~~~--- 90 (377)
T TIGR00890 16 SGYVYTW-TLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKF-GPRAVAMLGGILYGLGFTFYAIADS--- 90 (377)
T ss_pred hhHHhhh-hhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHc-CccchhHHhHHHHHHHHHHHHHHHH---
Confidence 3335544 4455677889999999999999999999999999999999999 9999999999999999988888765
Q ss_pred CCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhhHHHHhhhhHHHhhhh
Q 045562 133 GSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWYFGMCMGTFVTLTVL 212 (525)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~ 212 (525)
.+.+++.|++.|++.+...+.....+.+.+| ++ |+++.++...+.++|..+++.+.
T Consensus 91 -----------------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~------~~~~~~~~~~~~~~g~~~~~~~~ 146 (377)
T TIGR00890 91 -----------------LAALYLTYGLASAGVGIAYGIALNTAVKWFP-DK------RGLASGIIIGGYGLGSFILSPLI 146 (377)
T ss_pred -----------------HHHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cc------cHHHHHHHHHhcchhHhHHHHHH
Confidence 7888999999999999887888888888887 45 89999999999999988877777
Q ss_pred hhcccccchhhhHHHHHHHHHHHHHHHHhcccceeecCCCCCCchhhhHHHHHHHHHhccccCCchhhhHhhhhCCCCCC
Q 045562 213 NYIQDNLNWILGFGIPCILMVIALVVFLLGTKIYRYSLKGEEKSPFLRIGQVFVTAVRNWRITPSAIALEEEARGTLPHQ 292 (525)
Q Consensus 213 ~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (525)
+.+.+..|||+.|++.++..++..+..+...++.++...++ ++..
T Consensus 147 ~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---------------------------------- 191 (377)
T TIGR00890 147 TSVINLEGVPAAFIYMGIIFLLVIVLGAFLIGYPPGQLIKT-NIEV---------------------------------- 191 (377)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHHHHHHHheecCchhcccc-Cccc----------------------------------
Confidence 77777789999999888766655444433332211100000 0000
Q ss_pred CccchhhhhHHHhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhccccCcccccccChh
Q 045562 293 SSEQFKFLNKALLASNGSKGYGKVCSVGEVEEAKALLRLVPIWTTCLVYAIVFAQSSTFFTKQGVTMDRSVVADFQIPAA 372 (525)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (525)
+..+.++. +...++.++............... ....+..+..... . ......
T Consensus 192 ~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~----~-~~~~~~ 243 (377)
T TIGR00890 192 SVKDYTVW--------------------EMLRTPQFWVLYLSFFLNAVSGLL---LIGLYKPYGQSLG----L-SDGFLV 243 (377)
T ss_pred chhhhhHH--------------------HHHcCccHHHHHHHHHHHhHHHHH---HHHHHHHHHHHcC----C-CHHHHH
Confidence 00000000 000111111111111111111111 1111111111111 0 111122
Q ss_pred hhhhhhhHHHHHHHHhhhhhhhhhhhhhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCcCCCCCCcc
Q 045562 373 SLQSFISLAIVLTIPIYDRIFVPIARTFTRKPAGITMLQRIGTGMFLSAASMTGATLVEMKRLKTAEEYGLVDKPNVTIP 452 (525)
Q Consensus 373 ~~~~~~~~~~i~~~~l~~~~~~~l~~r~~~~~~~~~~~~~i~ig~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 452 (525)
.+.....+..++..++.++ +.||+++| +.+.++.++.+++.+.....+ .
T Consensus 244 ~~~~~~~~~~~~~~~~~g~----l~dr~g~~-------~~~~~~~~~~~~~~~~~~~~~--------------------~ 292 (377)
T TIGR00890 244 LAVSISSIFNGGGRPFLGA----LSDKIGRQ-------KTMSIVFGISAVGMAAMLFIP--------------------M 292 (377)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHhhh-------hhhhHHHHHHHHHHHHHHHcc--------------------c
Confidence 3444445555555566555 67776554 556677777777766655431 1
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC
Q 045562 453 MSVWWLIPQYALLGVSEAFTMVGLQEFFYDQVPTELRSVGLSLYLSIFGVGSFLSSFLISAIENATGG 520 (525)
Q Consensus 453 ~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~~~~~~i~~~~~~ 520 (525)
.+.+......++.+++.+...+....++.+..|+++||++.|+++....+|+.+++.+.|.+.+..|-
T Consensus 293 ~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~ 360 (377)
T TIGR00890 293 LNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGF 360 (377)
T ss_pred chhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhch
Confidence 12222333445566666666667778899999999999999999999999999999999999887653
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-22 Score=209.77 Aligned_cols=157 Identities=18% Similarity=0.216 Sum_probs=138.1
Q ss_pred HHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhccCCCCccCC
Q 045562 61 SNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVLGLGLLTLSAVLLSGSTSECQN 140 (525)
Q Consensus 61 ~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 140 (525)
+...+++.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||+++..+.++..++..++.+..+
T Consensus 14 ~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~~~~~~~~~~~~~----------- 81 (399)
T TIGR00893 14 SFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRF-GARKTLAVFIVIWGVFTGLQAFAGA----------- 81 (399)
T ss_pred hHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhc-CcceeeHHHHHHHHHHHHHHHHHcC-----------
Confidence 3344557889999999999999999999999999999999999 9999999999998888888887754
Q ss_pred CCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhhHHHHhhhhHHHhhhhhhcccccc
Q 045562 141 TSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWYFGMCMGTFVTLTVLNYIQDNLN 220 (525)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l~~~~g 220 (525)
.+.+++.|++.|++.+...+...+++.|.+|+++ |++++++.+...++|..++|.+++++.+..+
T Consensus 82 ---------~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~ 146 (399)
T TIGR00893 82 ---------YVSLYILRVLLGAAEAPFFPGIILIVASWFPASE------RATAVSIFNSAQGLGGIIGGPLVGWILIHFS 146 (399)
T ss_pred ---------HHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHH------HHHHHHHHHHhchHHHHHHHHHHHHHHHhCC
Confidence 7889999999999999999999999999999988 9999999999999999999999999988899
Q ss_pred hhhhHHHHHHHHHHHHHHHHhccc
Q 045562 221 WILGFGIPCILMVIALVVFLLGTK 244 (525)
Q Consensus 221 ~~~~f~~~~~~~~~~~~~~~~~~~ 244 (525)
|++.|++.++..++..+..+...+
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~ 170 (399)
T TIGR00893 147 WQWAFIIEGVLGIIWGVLWLKFIP 170 (399)
T ss_pred chHHHHHHHHHHHHHHHHhhheec
Confidence 999999887666555544444333
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.2e-22 Score=213.58 Aligned_cols=360 Identities=12% Similarity=0.030 Sum_probs=232.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHHHHH
Q 045562 42 ALFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVLGL 121 (525)
Q Consensus 42 ~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~~~~ 121 (525)
...++...++..+........+|.+.+ +++.+..+.+++.+.+.+...++.++.|+++||+ |||+++..+..+..++.
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~-g~~~~l~~~~~~~~~~~ 96 (417)
T PRK10489 19 FRAVFIARFISIFGLGLLGVAVPVQIQ-MMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRY-DRKKLILLARGTCGLGF 96 (417)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhc-CCceEEEehHHHHHHHH
Confidence 334444556666666666667777765 6778999999999999999999999999999999 99999998887777666
Q ss_pred HHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhhHHHH
Q 045562 122 GLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWYFGM 201 (525)
Q Consensus 122 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 201 (525)
.++........ .+++.+++.|++.|++.+...++..+++.|.+|+++ |+++.++.+...
T Consensus 97 ~~~~~~~~~~~---------------~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~ 155 (417)
T PRK10489 97 IGLALNAFLPE---------------PSLLAIYLLGLWDGFFGSLGVTALLAATPALVGREN------LMQAGAITMLTV 155 (417)
T ss_pred HHHHHHHHcCC---------------CcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHH------HHHHHHHHHHHH
Confidence 55543211000 125778889999999988888888999999999888 999999999999
Q ss_pred hhhhHHHhhhhhhcccccchhhhHHHHHHHHHHHHHHHHhcccceeecCCCCCCchhhhHHHHHHHHHhccccCCchhhh
Q 045562 202 CMGTFVTLTVLNYIQDNLNWILGFGIPCILMVIALVVFLLGTKIYRYSLKGEEKSPFLRIGQVFVTAVRNWRITPSAIAL 281 (525)
Q Consensus 202 ~~g~~~gp~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (525)
++|..+||.+++++.+..+|++.|++.++..++..+..+..++ .++++.++ +++..+..+.+
T Consensus 156 ~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~-~~~~~~~~~~~---------------- 217 (417)
T PRK10489 156 RLGSVISPALGGLLIAAGGVAWNYGLAAAGTFITLLPLLRLPA-LPPPPQPR-EHPLRSLLAGF---------------- 217 (417)
T ss_pred hHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhCCC-CCCCCccc-ccchHHHHHHH----------------
Confidence 9999999999999998889999998877766655544443322 11110000 01100000000
Q ss_pred HhhhhCCCCCCCccchhhhhHHHhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhcccc
Q 045562 282 EEEARGTLPHQSSEQFKFLNKALLASNGSKGYGKVCSVGEVEEAKALLRLVPIWTTCLVYAIVFAQSSTFFTKQGVTMDR 361 (525)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (525)
+ ...+.+.+............... ....++.+. ..
T Consensus 218 ---------------------------------~-----~~~~~~~~~~~~~~~~~~~~~~~----~~~~~p~~~---~~ 252 (417)
T PRK10489 218 ---------------------------------R-----FLLASPVVGGIALLGGLLTMASA----VRVLYPALA---DE 252 (417)
T ss_pred ---------------------------------H-----HHHcChHHHHHHHHHHHHHHHHh----HHHhhHHHH---Hh
Confidence 0 01111111111111111111111 111111111 11
Q ss_pred CcccccccChhhhhhhhhHHHHHHHHhhhhhhhhhhhhhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 045562 362 SVVADFQIPAASLQSFISLAIVLTIPIYDRIFVPIARTFTRKPAGITMLQRIGTGMFLSAASMTGATLVEMKRLKTAEEY 441 (525)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~l~~r~~~~~~~~~~~~~i~ig~~l~~i~~~~~~~~~~~~~~~~~~~ 441 (525)
..+. .....+.+.....+..++...+.++ +.||. .+.+.+..+.++.+++++.+...
T Consensus 253 ~~g~-~~~~~g~~~~~~~~g~~ig~~~~~~----l~~~~-------~~~~~l~~~~~~~~~~~~~~~~~----------- 309 (417)
T PRK10489 253 VWQM-GAAQIGLLYAAVPLGAALGALTSGW----LAHSA-------RPGLLMLLSTLGSFLAVGLFGLM----------- 309 (417)
T ss_pred ccCC-ChhHhHHHHHHHHHHHHHHHHHHHH----hhhcc-------CcchHHHHHHHHHHHHHHHHHcc-----------
Confidence 1111 1111233344444444444444433 44442 22245666777776666655542
Q ss_pred CCcCCCCCCccchHHHHHHHHHHHHHHHHHHhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCC
Q 045562 442 GLVDKPNVTIPMSVWWLIPQYALLGVSEAFTMVGLQEFFYDQVPTELRSVGLSLYLSIFGVGSFLSSFLISAIENATGGD 521 (525)
Q Consensus 442 g~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~~~~~~i~~~~~~~ 521 (525)
.+++.+....++.+++.+...+...+++.+..|++.||+++|+++....+|..+|+.+.|++.+..|..
T Consensus 310 -----------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~ 378 (417)
T PRK10489 310 -----------PMWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPV 378 (417)
T ss_pred -----------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchh
Confidence 345556667788888888888888899999999999999999999999999999999999999987643
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.5e-22 Score=206.95 Aligned_cols=339 Identities=14% Similarity=0.109 Sum_probs=226.4
Q ss_pred HHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhh
Q 045562 49 EMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVLGLGLLTLSA 128 (525)
Q Consensus 49 ~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~~~~~l~~~~~ 128 (525)
.+..+-..+.+.+.+|. +++++|.|..+.+++.+.+.++..++.++.|+++||+ |||+++..+..+.+++.+++++++
T Consensus 18 ~~~~~~~~~~~~~~lp~-i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~-G~r~~l~~~~~l~~~~~~~~~~a~ 95 (393)
T PRK09705 18 GLNMRPLLTSVGPLLPQ-LRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHV-SERRSVAISLLLIAVGALMRELYP 95 (393)
T ss_pred HHHcchhhhccchhHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHh-CchHHHHHHHHHHHHHHHHHHHCc
Confidence 33344444666666665 6679999999999999999999999999999999999 999999999999999999999886
Q ss_pred hhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhhHHHHhhhhHHH
Q 045562 129 VLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWYFGMCMGTFVT 208 (525)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g 208 (525)
+ ++.++++|+++|++.+...+...+++.|.+| ++ |+++++.+..+.+.|..+|
T Consensus 96 ~--------------------~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~------~~~~~g~~~~~~~~g~~~g 148 (393)
T PRK09705 96 Q--------------------SALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QR------TPLVMGLWSAALMGGGGLG 148 (393)
T ss_pred c--------------------hHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-cc------chhHHHHHHHHHHHHHHHH
Confidence 5 6788999999999999999999999999987 66 8999999999999999999
Q ss_pred hhhhhhccccc-chhhhHHHHHHHHHHHHHHHHhcccceeecCCCCCCchhhhHHHHHHHHHhccccCCchhhhHhhhhC
Q 045562 209 LTVLNYIQDNL-NWILGFGIPCILMVIALVVFLLGTKIYRYSLKGEEKSPFLRIGQVFVTAVRNWRITPSAIALEEEARG 287 (525)
Q Consensus 209 p~~~~~l~~~~-g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (525)
+.+++++.++. +||..+.+.++..++.++..+...++. +++++++.
T Consensus 149 ~~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~----------------------------- 195 (393)
T PRK09705 149 AAITPWLVQHSETWYQTLAWWALPAVVALFAWWWQSARE----VASSHKTT----------------------------- 195 (393)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhcCC----CccccCCC-----------------------------
Confidence 99999988875 799988765554444433333222211 11100000
Q ss_pred CCCCCCccchhhhhHHHhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhccccCccccc
Q 045562 288 TLPHQSSEQFKFLNKALLASNGSKGYGKVCSVGEVEEAKALLRLVPIWTTCLVYAIVFAQSSTFFTKQGVTMDRSVVADF 367 (525)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (525)
..+.+ ...+++.....+...+....++....+.+.++.+ ...+
T Consensus 196 -----------------------~~~~~-----~l~~~~~~~l~~~~~~~~~~~~~~~~~lp~~l~~--~g~s------- 238 (393)
T PRK09705 196 -----------------------TTPVR-----VVFTPRAWTLGVYFGLINGGYASLIAWLPAFYIE--IGAS------- 238 (393)
T ss_pred -----------------------cCCcc-----cccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCC-------
Confidence 00000 0111111111111122222333333333333322 1111
Q ss_pred ccChhhhhhhhhHHHHHHHHhhhhhhhhhhhhhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCcCCC
Q 045562 368 QIPAASLQSFISLAIVLTIPIYDRIFVPIARTFTRKPAGITMLQRIGTGMFLSAASMTGATLVEMKRLKTAEEYGLVDKP 447 (525)
Q Consensus 368 ~~~~~~~~~~~~~~~i~~~~l~~~~~~~l~~r~~~~~~~~~~~~~i~ig~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~ 447 (525)
....+.+.....+..++..++.++ +.||.++| +.+.+++.+..++...+....
T Consensus 239 ~~~ag~~~~~~~i~~i~g~~~~g~----l~~r~~~~-------~~~~~~~~l~~~~~~~~~~~~---------------- 291 (393)
T PRK09705 239 AQYSGSLLALMTLGQAAGALLMPA----MARHQDRR-------KLLMLALVLQLVGFCGFIWLP---------------- 291 (393)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHH----HHhhccch-------HHHHHHHHHHHHHHHHHHHcc----------------
Confidence 111223444444555555555444 67775544 566777777777666554321
Q ss_pred CCCccchHHHHHHHHHHHHHHHHHHhhhhHHHhhhccC-chhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC
Q 045562 448 NVTIPMSVWWLIPQYALLGVSEAFTMVGLQEFFYDQVP-TELRSVGLSLYLSIFGVGSFLSSFLISAIENATGG 520 (525)
Q Consensus 448 ~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P-~~~rg~~~gi~~~~~~lg~~lg~~~~~~i~~~~~~ 520 (525)
.+...+ ..++.+++.+...|.......+..| ++.+|+..|+.+....++..++|.+.|++.+.+|+
T Consensus 292 -----~~~~~~--~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~ 358 (393)
T PRK09705 292 -----LQLPVL--WAMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGN 358 (393)
T ss_pred -----chHHHH--HHHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 122222 2345577777777777777777774 68899999999999999999999999999999875
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.5e-22 Score=205.07 Aligned_cols=174 Identities=11% Similarity=0.170 Sum_probs=151.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHHH
Q 045562 40 RSALFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVL 119 (525)
Q Consensus 40 ~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~~ 119 (525)
+.++.+.+..+......+.+.+.+|.+ ++++|.+..+.++..+.+.++..++.++.|+++||+ |||+++..+.++.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~ 80 (382)
T PRK10091 3 KVILSLALGTFGLGMAEFGIMGVLTEL-AHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRY-SLKHILLFLVALCVI 80 (382)
T ss_pred chHHHHHHHHHHHHhhHHHHHhChHHH-HHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccC-ccHHHHHHHHHHHHH
Confidence 456777777788888878888888764 568999999999999999999999999999999999 999999999999999
Q ss_pred HHHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhhHH
Q 045562 120 GLGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWYF 199 (525)
Q Consensus 120 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 199 (525)
+.+++.++++ .+.+++.|++.|++.+...+...+++.|.+|+++ |+++++....
T Consensus 81 ~~~l~~~~~~--------------------~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~ 134 (382)
T PRK10091 81 GNAMFTLSSS--------------------YLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGK------VTAAVAGMVS 134 (382)
T ss_pred HHHHHHHhCc--------------------HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHH------hhHHHHHHHH
Confidence 9988887754 7889999999999999888888889999999887 8999999999
Q ss_pred HHhhhhHHHhhhhhhcccccchhhhHHHHHHHHHHHHHHHHh
Q 045562 200 GMCMGTFVTLTVLNYIQDNLNWILGFGIPCILMVIALVVFLL 241 (525)
Q Consensus 200 ~~~~g~~~gp~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~ 241 (525)
+..+|..++|.+++++.+.+|||++|++.++..++..+..+.
T Consensus 135 ~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~ 176 (382)
T PRK10091 135 GMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLASIYF 176 (382)
T ss_pred HHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999899999999988765555444333
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=7e-22 Score=208.87 Aligned_cols=164 Identities=13% Similarity=0.102 Sum_probs=140.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHHHHHHH
Q 045562 44 FIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVLGLGL 123 (525)
Q Consensus 44 ~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~~~~~l 123 (525)
..++..+...+..+.+...+|.+. +++|.|..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++..++.++
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~~~~~~~~~~~~~~~ 104 (434)
T PRK11663 27 TMYLGYALFYFTRKSFNAAMPEML-ADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRS-NARYFMGIGLIATGIINIL 104 (434)
T ss_pred HHHHHHHHHHHhhhhHHHhhHHHH-HhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhc-CCchhHHHHHHHHHHHHHH
Confidence 333444444444455556676665 47999999999999999999999999999999999 9999999999999998888
Q ss_pred HHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhhHHHHhh
Q 045562 124 LTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWYFGMCM 203 (525)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 203 (525)
+.+..+ .+.+++.|++.|++.|...+...+++.|++|+++ |++++++++.+.++
T Consensus 105 ~~~~~~--------------------~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~------rg~~~~~~~~~~~~ 158 (434)
T PRK11663 105 FGFSSS--------------------LWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTE------RGGWWAIWNTAHNV 158 (434)
T ss_pred HHHHhH--------------------HHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHH------HHHHHHHHHHHHHH
Confidence 887754 6788889999999999989999999999999988 99999999999999
Q ss_pred hhHHHhhhhhhcccccchhhhHHHHHHHHHHH
Q 045562 204 GTFVTLTVLNYIQDNLNWILGFGIPCILMVIA 235 (525)
Q Consensus 204 g~~~gp~~~~~l~~~~g~~~~f~~~~~~~~~~ 235 (525)
|..++|.+++++.+.+|||+.|++.++..++.
T Consensus 159 g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~ 190 (434)
T PRK11663 159 GGALIPLVVGAIALHYGWRYGMMIAGIIAIVV 190 (434)
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 99999999999999999999999877655443
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.7e-22 Score=206.16 Aligned_cols=155 Identities=15% Similarity=0.148 Sum_probs=134.8
Q ss_pred HHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhccCCCCccCCC
Q 045562 62 NLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVLGLGLLTLSAVLLSGSTSECQNT 141 (525)
Q Consensus 62 ~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 141 (525)
...+++.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||+++..+.++..++.+++.++.+
T Consensus 16 ~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~~~------------ 82 (379)
T TIGR00881 16 LAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRS-NPRVFLPIGLILCAIVNLFFGFSTS------------ 82 (379)
T ss_pred hhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhh-CCeehhHHHHHHHHHHHHHHHHhhh------------
Confidence 334467789999999999999999999999999999999999 9999999999999999888887754
Q ss_pred CcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhhHHHHhhhhHHHh-hhhhhcccccc
Q 045562 142 SCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWYFGMCMGTFVTL-TVLNYIQDNLN 220 (525)
Q Consensus 142 ~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp-~~~~~l~~~~g 220 (525)
.+.+++.|++.|++.+...+...+++.|.+|+++ |++++++.+...++|..++| .+++.+.+..+
T Consensus 83 --------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 148 (379)
T TIGR00881 83 --------LWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSE------RGTWVSFWNCSHNVGGGLLPPLVLFGIAELYS 148 (379)
T ss_pred --------HHHHHHHHHHHHhhccccCCchHHHHHHhcCHhh------heeeEeehhccchhHHHHHHHHHHHHHHhcCC
Confidence 7889999999999999999999999999999988 99999999999999999999 57777777889
Q ss_pred hhhhHHHHHHHHHHHHHHHHhcc
Q 045562 221 WILGFGIPCILMVIALVVFLLGT 243 (525)
Q Consensus 221 ~~~~f~~~~~~~~~~~~~~~~~~ 243 (525)
|+..|++.+++.++..+..+...
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~ 171 (379)
T TIGR00881 149 WHWVFIVPGIIAIIVSLICFLLL 171 (379)
T ss_pred chhHHHHHHHHHHHHHHHHheee
Confidence 99999887766555444444333
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.2e-21 Score=203.34 Aligned_cols=345 Identities=12% Similarity=0.065 Sum_probs=226.5
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHH
Q 045562 39 WRSALFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYV 118 (525)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~ 118 (525)
.|.++.++...+...+....+.+.+|.|+. ++|.|..+.|++.+.+.++..+++++.|+++||+ |||+++..+.++..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~-~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~-g~k~~~~~~~~~~~ 82 (381)
T PRK03633 5 TRPVLLLLCGLLLLTLAIAVLNTLVPLWLA-QEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRI-GFNRSYYLASLIFA 82 (381)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHH
Confidence 456788888888888888888899999887 6899999999999999999999999999999999 99999999999999
Q ss_pred HHHHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhhH
Q 045562 119 LGLGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWY 198 (525)
Q Consensus 119 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 198 (525)
++...+.+.++ .+.+++.|+++|++.+...|...+.+.+..++++ |++++++++
T Consensus 83 ~~~~~~~~~~~--------------------~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~ 136 (381)
T PRK03633 83 AGCAGLGLMVG--------------------FWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRN------RGRLLAAYM 136 (381)
T ss_pred HHHHHHHHhcc--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HHHHHHHHH
Confidence 88888777654 7888999999999999988888888888888887 999999999
Q ss_pred HHHhhhhHHHhhhhhhcccccchhhhHHHHHHHHHHHHHHHHhcccceeecCCCCCCchhhhHHHHHHHHHhccccCCch
Q 045562 199 FGMCMGTFVTLTVLNYIQDNLNWILGFGIPCILMVIALVVFLLGTKIYRYSLKGEEKSPFLRIGQVFVTAVRNWRITPSA 278 (525)
Q Consensus 199 ~~~~~g~~~gp~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (525)
...++|..+||.+++++.+...+...+...... ...+..+ ..+.+ ++++++ ++..+
T Consensus 137 ~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~--~~~~~~--~~~~~------------------ 192 (381)
T PRK03633 137 MVYYLGTVLGQLLVSKVSTELMSVLPWVTGLVL-AAILPLL-FTRIL--NQQAEN--HDSTS------------------ 192 (381)
T ss_pred HHHHHHHHHHHHHHhcccccccchHHHHHHHHH-HHHHHHH-Hhccc--CCCCCC--CCCCC------------------
Confidence 999999999999999987754343333322221 1111111 11111 000000 00000
Q ss_pred hhhHhhhhCCCCCCCccchhhhhHHHhhcCCCCCCCcccchhhHHHHHHHHHHHH-HHHHHHHHHHHHhhccchhhhhhh
Q 045562 279 IALEEEARGTLPHQSSEQFKFLNKALLASNGSKGYGKVCSVGEVEEAKALLRLVP-IWTTCLVYAIVFAQSSTFFTKQGV 357 (525)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 357 (525)
.. +...+ +..+.... .+.....+...+...+.++..
T Consensus 193 --------------------------------------~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~--- 229 (381)
T PRK03633 193 --------------------------------------IW-PMLKL-RQARLGVNGCIISGIVLGSLYGLMPLYLNH--- 229 (381)
T ss_pred --------------------------------------HH-HHHHh-cchHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 00 00111 11111111 111111111111111221111
Q ss_pred ccccCcccccccChhhhhhhhhHHHHHHHHhhhhhhhhhhhhhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 045562 358 TMDRSVVADFQIPAASLQSFISLAIVLTIPIYDRIFVPIARTFTRKPAGITMLQRIGTGMFLSAASMTGATLVEMKRLKT 437 (525)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~l~~r~~~~~~~~~~~~~i~ig~~l~~i~~~~~~~~~~~~~~~ 437 (525)
. +. .....+.+.....+..++...+. .++.||+++| +.+..+..+.+++......
T Consensus 230 -~----g~-s~~~~g~~~~~~~~~~~~~~~~~----g~l~dr~~~~-------~~l~~~~~~~~~~~~~~~~-------- 284 (381)
T PRK03633 230 -Q----GM-SDASIGFWMALLVSAGILGQWPI----GRLADRFGRL-------LVLRVQVFVVILGSIAMLS-------- 284 (381)
T ss_pred -c----CC-CHHHHHHHHHHHHHHHHHHHhhh----HHHHHHcCcH-------HHHHHHHHHHHHHHHHHhh--------
Confidence 0 11 11111223333334444444443 4477775543 5666666666665543321
Q ss_pred hhhcCCcCCCCCCccchHHHHHHHHHHHHHHHHHHhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 045562 438 AEEYGLVDKPNVTIPMSVWWLIPQYALLGVSEAFTMVGLQEFFYDQVPTELRSVGLSLYLSIFGVGSFLSSFLISAIENA 517 (525)
Q Consensus 438 ~~~~g~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~~~~~~i~~~ 517 (525)
. +......++.+++.....|..++.+.+..|++.++.+.+.+++...+|+.+||.+.|++.+.
T Consensus 285 ----------------~-~~~~~~~~l~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~ 347 (381)
T PRK03633 285 ----------------Q-AAMAPALFILGAAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQN 347 (381)
T ss_pred ----------------h-HHHHHHHHHHHHHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 11223445667777778899999999999999989899999999999999999999999887
Q ss_pred ccC
Q 045562 518 TGG 520 (525)
Q Consensus 518 ~~~ 520 (525)
+|.
T Consensus 348 ~g~ 350 (381)
T PRK03633 348 YSD 350 (381)
T ss_pred hCc
Confidence 764
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.8e-21 Score=204.54 Aligned_cols=368 Identities=15% Similarity=0.177 Sum_probs=213.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--CCChHHHHHHH-----HHHHHHHHhhhhhHHHHhhhccchHHHHH
Q 045562 39 WRSALFIIGVEMAERFAYYGVSSNLITYLTGPL--AQSTATAAENV-----NAWSGVASLLPLFGAFLADSFLGRYRAII 111 (525)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~l--g~s~~~~~~~~-----~~~~~~~~~~~~~~G~lsD~~~Grr~~~~ 111 (525)
+|..+..++..+++.+....+....+.++.+++ +.++.+ +++. ++..++..++.++.|+++||+ |||+++.
T Consensus 21 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~-Grr~~l~ 98 (438)
T PRK09952 21 RRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPAM-GTLAAFATFGVGFLFRPLGGVVFGHFGDRL-GRKRMLM 98 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHhh-ccHHHHH
Confidence 344455555666666666544444555555544 566653 4432 233445667778889999999 9999999
Q ss_pred HHHHHHHHHHHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccc
Q 045562 112 IASLIYVLGLGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKS 191 (525)
Q Consensus 112 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~ 191 (525)
.+.+++.++.++++++++..... .++...+++.|+++|++.|+..|....++.|.+|+++ |+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~------rg 160 (438)
T PRK09952 99 LTVWMMGIATALIGLLPSFSTIG------------WWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNK------KA 160 (438)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHH------------HHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCC------Cc
Confidence 99999999999988875411100 0112358889999999999999999999999999988 99
Q ss_pred eehhhhHHHHhhhhHHHhhhhhhcc--------cccchhhhHHHHHHHHHHHHHHHHhcccceeecCCCCCCchhhhHHH
Q 045562 192 SFFNWWYFGMCMGTFVTLTVLNYIQ--------DNLNWILGFGIPCILMVIALVVFLLGTKIYRYSLKGEEKSPFLRIGQ 263 (525)
Q Consensus 192 ~~~~~~~~~~~~g~~~gp~~~~~l~--------~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (525)
+..+..+.+..+|..++..+..++. ..+|||.+|++.++..++.+ +. ++.. ++ +|... +
T Consensus 161 ~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~~---~l-~~~~----~e---s~~~~--~ 227 (438)
T PRK09952 161 FYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIAL---WV-RNGM----EE---SAEFE--Q 227 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHHH---HH-HHhC----CC---ChhHH--H
Confidence 9999988888888888877766554 35799999998776543322 11 1111 11 11000 0
Q ss_pred HHHHHHhccccCCchhhhHhhhhCCCCCCCccchhhhhHHHhhcCCCCCCCcccchhhHHHHHHHHHHHHHH-HHHHHHH
Q 045562 264 VFVTAVRNWRITPSAIALEEEARGTLPHQSSEQFKFLNKALLASNGSKGYGKVCSVGEVEEAKALLRLVPIW-TTCLVYA 342 (525)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~ 342 (525)
.+.+.. +. ..+.++. +...++++......... .....++
T Consensus 228 -----~~~~~~------------------~~--------------~~~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~ 267 (438)
T PRK09952 228 -----QQHEQA------------------AA--------------KKRIPVI---EALLRHPGAFLKIIALRLCELLTMY 267 (438)
T ss_pred -----HHhhcc------------------cc--------------cccCCHH---HHHHHchHHHHHHHHHHHHHHHHHH
Confidence 000000 00 0000100 00111222222111111 1122223
Q ss_pred HHHhhccchhhhhhhccccCcccccccChhh---hhhhhhHHHHHHHHhhhhhhhhhhhhhccCCCCCCchHHHHHHHHH
Q 045562 343 IVFAQSSTFFTKQGVTMDRSVVADFQIPAAS---LQSFISLAIVLTIPIYDRIFVPIARTFTRKPAGITMLQRIGTGMFL 419 (525)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~~~~l~~~~~~~l~~r~~~~~~~~~~~~~i~ig~~l 419 (525)
....+.+.++. +.. +.+... .........++..++.++ +.||++|| +.+..+.++
T Consensus 268 ~~~~~~~~y~~-~~~----------g~s~~~~~~~~~~~g~~~~i~~~~~g~----l~Dr~grr-------~~~~~~~~~ 325 (438)
T PRK09952 268 IVTAFALNYST-QNL----------GLPRELFLNIGLLVGGLSCLTIPCFAW----LADRFGRR-------RVYITGALI 325 (438)
T ss_pred HHHHHHHHHHH-Hhc----------CCCHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhCch-------HHHHHHHHH
Confidence 22222222221 111 111111 122223333444555544 67887665 455555555
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcCCcCCCCCCccchHHHHHHHHHHHHHHHHHHhhhhHHHhhhccCchhHHHHHHHHH-H
Q 045562 420 SAASMTGATLVEMKRLKTAEEYGLVDKPNVTIPMSVWWLIPQYALLGVSEAFTMVGLQEFFYDQVPTELRSVGLSLYL-S 498 (525)
Q Consensus 420 ~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~-~ 498 (525)
..++.......... ..+.+.++...++.+++.+...+..+.++.|..|++.|+.+.|+.+ +
T Consensus 326 ~~~~~~~~~~~~~~------------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~ 387 (438)
T PRK09952 326 GTLSAFPFFMALEA------------------QSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQV 387 (438)
T ss_pred HHHHHHHHHHHHHc------------------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHH
Confidence 44433322221000 1123334445566678877778888899999999999999999955 4
Q ss_pred HHHHHHHHHHHHHHHhhhhcc
Q 045562 499 IFGVGSFLSSFLISAIENATG 519 (525)
Q Consensus 499 ~~~lg~~lg~~~~~~i~~~~~ 519 (525)
...+|+.++|.+.+++.+.++
T Consensus 388 ~~~lgg~~~p~i~g~l~~~~~ 408 (438)
T PRK09952 388 ASVVGGGFTPFIAAALVTYFG 408 (438)
T ss_pred HHHHHHHHHHHHHHHHHHhcC
Confidence 566899999999999988664
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-21 Score=205.38 Aligned_cols=345 Identities=12% Similarity=0.052 Sum_probs=223.5
Q ss_pred HHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhccC
Q 045562 54 FAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVLGLGLLTLSAVLLSG 133 (525)
Q Consensus 54 ~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~~~~~l~~~~~~~~~~ 133 (525)
+....+.+.++. +.+++|.|..+.++..+.+.++..++.++.|+++||+ |||+++..+..+..++.+++..+.+
T Consensus 27 ~~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~~---- 100 (406)
T PRK15402 27 IANDMIQPGMLA-VVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRI-GRRPVMLAGVAFFILTCLAILLAQS---- 100 (406)
T ss_pred hhhhhHhcchHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHHHHHHHHHHHHcc----
Confidence 344445555655 4568999999999999999999999999999999999 9999999999888888887776643
Q ss_pred CCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhhHHHHhhhhHHHhhhhh
Q 045562 134 STSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWYFGMCMGTFVTLTVLN 213 (525)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~ 213 (525)
.+.+++.|+++|++.+...+...+.+.|.+|+++ |.++.++.+....+|..++|.+++
T Consensus 101 ----------------~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~i~~ 158 (406)
T PRK15402 101 ----------------IEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEAD------AIKITALMANVALLAPLLGPLVGA 158 (406)
T ss_pred ----------------HHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhH------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788899999999999888888999999999888 889999988888899999999999
Q ss_pred hcccccchhhhHHHHHHHHHHHHHHHHhcccceeecCCCCCCchhhhHHHHHHHHHhccccCCchhhhHhhhhCCCCCCC
Q 045562 214 YIQDNLNWILGFGIPCILMVIALVVFLLGTKIYRYSLKGEEKSPFLRIGQVFVTAVRNWRITPSAIALEEEARGTLPHQS 293 (525)
Q Consensus 214 ~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (525)
++.++.+|++.|++.++..++..+..+...++.++.++++ .+..+..+.
T Consensus 159 ~l~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~----------------------------- 207 (406)
T PRK15402 159 ALIHVLPWRGMFVLFAALAALSFFGLWRAMPETAGRVGEK--LSLKELGRD----------------------------- 207 (406)
T ss_pred HHHHccCccHHHHHHHHHHHHHHHHHHHhCCCCCcccccc--ccHHHHHHH-----------------------------
Confidence 9999899999998877766665554433333221110000 000000000
Q ss_pred ccchhhhhHHHhhcCCCCCCCcccchhhHHHHHHHHHHHH-HHHHHHHHHHHHhhccchhhhhhhccccCcccccccChh
Q 045562 294 SEQFKFLNKALLASNGSKGYGKVCSVGEVEEAKALLRLVP-IWTTCLVYAIVFAQSSTFFTKQGVTMDRSVVADFQIPAA 372 (525)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (525)
. + .....+.++.... ..+............+..+.. ....+ ....+
T Consensus 208 -----------------------~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~g~~-------~~~~g 254 (406)
T PRK15402 208 -----------------------Y-K-LVLKNRRFVAGALALGLVSLPLLAWIALSPVILIS-GEQLS-------SYEYG 254 (406)
T ss_pred -----------------------H-H-HHHcCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-HhCCC-------HHHHH
Confidence 0 0 0111111211111 111111111111111111111 01111 01111
Q ss_pred hhhhhhhHHHHHHHHhhhhhhhhhhhhhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCcCCCCCCcc
Q 045562 373 SLQSFISLAIVLTIPIYDRIFVPIARTFTRKPAGITMLQRIGTGMFLSAASMTGATLVEMKRLKTAEEYGLVDKPNVTIP 452 (525)
Q Consensus 373 ~~~~~~~~~~i~~~~l~~~~~~~l~~r~~~~~~~~~~~~~i~ig~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 452 (525)
.......+..++..++. .++.||.++ ++.+.++.++..++.+........ . .
T Consensus 255 ~~~~~~~~~~~~g~~~~----g~l~~r~~~-------~~~~~~~~~~~~~g~~~~~~~~~~--------~---------~ 306 (406)
T PRK15402 255 LLQVPVFGALIAGNLTL----ARLTSRRPL-------RSLIRMGLWPMVAGLLLAALATVI--------S---------S 306 (406)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHhcCH-------HHHHHHHHHHHHHHHHHHHHHHHc--------c---------c
Confidence 12222222233333333 346677543 366777887777777766653210 0 1
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 045562 453 MSVWWLIPQYALLGVSEAFTMVGLQEFFYDQVPTELRSVGLSLYLSIFGVGSFLSSFLISAIENATG 519 (525)
Q Consensus 453 ~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~~~~~~i~~~~~ 519 (525)
.+.+++....++.+++++...+..+..... .++++||+..+++++...+|..+|+.+.+.+.+..+
T Consensus 307 ~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~ 372 (406)
T PRK15402 307 HAYLWLTAGLSLYAFGIGLANAGLYRLTLF-SSDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLGGG 372 (406)
T ss_pred ccHHHHHHHHHHHHHHHHHHhhhHHHHHhh-hccccccHHHHHHHHHHHHHHHHHHHHHHhcccCCc
Confidence 356667778888999999888877666544 455899999999999999999999999998877654
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.3e-21 Score=198.57 Aligned_cols=326 Identities=20% Similarity=0.267 Sum_probs=248.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHHHHHHH
Q 045562 44 FIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVLGLGL 123 (525)
Q Consensus 44 ~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~~~~~l 123 (525)
.+....+...+..+...+.++.|.. ++|.+..+.+++.+...+...++.++.|+++||+ |||+.+..+.++..++.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~-g~r~~~~~~~~~~~~~~~~ 80 (352)
T cd06174 3 LLFLGFFLSGLDRGLLSPALPLLAE-DLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRF-GRRRVLLLGLLLFALGSLL 80 (352)
T ss_pred HHHHHHHHHHHhhhhhHhhHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-CCchhhHHHHHHHHHHHHH
Confidence 4556667778888888888888775 6799999999999999999999999999999999 9999999999999999888
Q ss_pred HHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhhHHHHhh
Q 045562 124 LTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWYFGMCM 203 (525)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 203 (525)
+....+ .+.+++.|++.|++.+...+...+++.|.+|+++ |++++++.+...++
T Consensus 81 ~~~~~~--------------------~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~ 134 (352)
T cd06174 81 LAFASS--------------------LWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKE------RGRALGLFSAGFGL 134 (352)
T ss_pred HHHhcc--------------------HHHHHHHHHHHHcccccccHhHHHHHHHhCCccc------hhhhhhHHHHHHHH
Confidence 887643 6888999999999999999999999999999988 99999999999999
Q ss_pred hhHHHhhhhhhcccccchhhhHHHHHHHHHHHHHHHHhcccceeecCCCCCCchhhhHHHHHHHHHhccccCCchhhhHh
Q 045562 204 GTFVTLTVLNYIQDNLNWILGFGIPCILMVIALVVFLLGTKIYRYSLKGEEKSPFLRIGQVFVTAVRNWRITPSAIALEE 283 (525)
Q Consensus 204 g~~~gp~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (525)
|..++|.+++++.+..+|+..|++.++..++..+.....+ +
T Consensus 135 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~------------------------------ 175 (352)
T cd06174 135 GALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFLL---------R------------------------------ 175 (352)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH---------H------------------------------
Confidence 9999999999999988999999988877666554443322 0
Q ss_pred hhhCCCCCCCccchhhhhHHHhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhccccCc
Q 045562 284 EARGTLPHQSSEQFKFLNKALLASNGSKGYGKVCSVGEVEEAKALLRLVPIWTTCLVYAIVFAQSSTFFTKQGVTMDRSV 363 (525)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (525)
.++...............+......+..+..
T Consensus 176 -------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 206 (352)
T cd06174 176 -------------------------------------------LLLLLALAFFLLSFGYYGLLTYLPLYLQEVL------ 206 (352)
T ss_pred -------------------------------------------HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhc------
Confidence 0000011111111111111111111111100
Q ss_pred ccccccChhhhhhhhhHHHHHHHHhhhhhhhhhhhhhccCCCCCCchH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhcC
Q 045562 364 VADFQIPAASLQSFISLAIVLTIPIYDRIFVPIARTFTRKPAGITMLQ-RIGTGMFLSAASMTGATLVEMKRLKTAEEYG 442 (525)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~l~~r~~~~~~~~~~~~-~i~ig~~l~~i~~~~~~~~~~~~~~~~~~~g 442 (525)
+. .....+.+.....+..++..++.++ +.||.++| + .+.++..+..++.+.....
T Consensus 207 ~~-~~~~~~~~~~~~~~~~~i~~~~~~~----~~~~~~~~-------~~~~~~~~~~~~i~~~~~~~~------------ 262 (352)
T cd06174 207 GL-SAAEAGLLLSLFGLGGILGALLGGL----LSDRLGRR-------RLLLLIGLLLAALGLLLLALA------------ 262 (352)
T ss_pred CC-CHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhh-------hHHHHHHHHHHHHHHHHHHHh------------
Confidence 11 1122234455556666666666555 66776655 5 6778888888888777763
Q ss_pred CcCCCCCCccchHHHHHHHHHHHHHHHHHHhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 045562 443 LVDKPNVTIPMSVWWLIPQYALLGVSEAFTMVGLQEFFYDQVPTELRSVGLSLYLSIFGVGSFLSSFLISAIENATG 519 (525)
Q Consensus 443 ~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~~~~~~i~~~~~ 519 (525)
.+.+......++.+++.+...+...+++.+..|+++|++.+|+++....+|+.+++.+.+.+.+..+
T Consensus 263 ----------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~ 329 (352)
T cd06174 263 ----------PSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGG 329 (352)
T ss_pred ----------ccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 2466777888999999999999999999999999999999999999999999999999999987543
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.6e-22 Score=212.95 Aligned_cols=167 Identities=16% Similarity=0.229 Sum_probs=142.5
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHH
Q 045562 38 GWRSALFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIY 117 (525)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~ 117 (525)
+++....+....+...+..+.....+ .++.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||+++..+.++.
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~ 95 (496)
T PRK03893 18 QWKAFSAAWLGYLLDGFDFVLITLVL-TEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRY-GRRLAMVISIVLF 95 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHH
Confidence 34444555555566666665555444 456779999999999999999999999999999999999 9999999999988
Q ss_pred HHHHHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhh
Q 045562 118 VLGLGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWW 197 (525)
Q Consensus 118 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 197 (525)
.++.+++.+..+ .+.+++.|++.|++.++..+...+++.|.+|+++ |+++++..
T Consensus 96 ~~~~~~~~~~~~--------------------~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~ 149 (496)
T PRK03893 96 SVGTLACGFAPG--------------------YWTLFIARLVIGMGMAGEYGSSATYVIESWPKHL------RNKASGFL 149 (496)
T ss_pred HHHHHHHHHHhH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HHHHHHHH
Confidence 888888887654 6888999999999999999999999999999988 99999999
Q ss_pred HHHHhhhhHHHhhhhhhcccccchhhhHHHHHHHH
Q 045562 198 YFGMCMGTFVTLTVLNYIQDNLNWILGFGIPCILM 232 (525)
Q Consensus 198 ~~~~~~g~~~gp~~~~~l~~~~g~~~~f~~~~~~~ 232 (525)
+...++|..++|.+.+++.+++||++.|++.++..
T Consensus 150 ~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~~~~~~ 184 (496)
T PRK03893 150 ISGFSIGAVVAAQVYSLVVPVWGWRALFFIGILPI 184 (496)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 99999999999999999999999999998755433
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.5e-21 Score=200.00 Aligned_cols=172 Identities=12% Similarity=0.071 Sum_probs=141.9
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHH
Q 045562 36 YGGWRSALFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASL 115 (525)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~ 115 (525)
.+.||++.......+......+...++++.|+ +++|.+..+.+++.+.+.++..++.++.|+++||+ ||||++..+..
T Consensus 9 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~-g~k~~l~~~~~ 86 (402)
T TIGR00897 9 IGIPLNLLWGYIGVVVFMTGDGLEQGWLSPFL-KALGLSPQQSASAFTLYGIAAAISAWISGVVAEII-GPLKTMMIGLL 86 (402)
T ss_pred cCCCchhhHHHHHHHHHHHhhhhHHHhHHHHH-HHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHH
Confidence 35677888888888888888888888899988 47899999999999999999999999999999999 99999999998
Q ss_pred HHHHHHHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehh
Q 045562 116 IYVLGLGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFN 195 (525)
Q Consensus 116 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 195 (525)
+..++..++...... ..+.+.+++.|++.|+|.+...+...+.+.+.+|+++ |+++.+
T Consensus 87 ~~~~~~~~~~~~~~~----------------~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~------~g~~~g 144 (402)
T TIGR00897 87 LWCVGHAAFIVFGLG----------------HANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDN------LSSAVG 144 (402)
T ss_pred HHHHHHHHHHHHhcc----------------CccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHH------HHHHHH
Confidence 888876655321110 0125677889999999988887888888899999888 999999
Q ss_pred hhHHHHhhhh-HHHhhhhhhcccccchhhhHHHHHHH
Q 045562 196 WWYFGMCMGT-FVTLTVLNYIQDNLNWILGFGIPCIL 231 (525)
Q Consensus 196 ~~~~~~~~g~-~~gp~~~~~l~~~~g~~~~f~~~~~~ 231 (525)
+.+.+.++|. .++|.+++++.+.+||+..++.....
T Consensus 145 ~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~~~ 181 (402)
T TIGR00897 145 WFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSALAF 181 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHH
Confidence 9999999996 58999999999888976665554433
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.9e-21 Score=204.03 Aligned_cols=169 Identities=16% Similarity=0.237 Sum_probs=126.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccccC---CChHHHHH---HHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHHHH
Q 045562 47 GVEMAERFAYYGVSSNLITYLTGPLA---QSTATAAE---NVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVLG 120 (525)
Q Consensus 47 ~~~~~~~~~~y~~~~~l~~yl~~~lg---~s~~~~~~---~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~~~ 120 (525)
+..+++.+.... .+++..++.++++ .+..+.+. +.+...++..++.+++|+++||+ |||+++..+.+++.++
T Consensus 29 ~~~~~~~~d~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~-Grr~~l~~~~~~~~~~ 106 (432)
T PRK10406 29 SGNLVEWFDFYV-YSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKH-GRKKSMLISVCMMCFG 106 (432)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHH
Confidence 445555555554 5667778888874 45554333 33344455558899999999999 9999999999999999
Q ss_pred HHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhhHHH
Q 045562 121 LGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWYFG 200 (525)
Q Consensus 121 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 200 (525)
.++++++.+..... ..+...+++.|+++|++.|+..|...++++|.+|+++ |+++.++.+.+
T Consensus 107 ~~~~~~~~~~~~~~------------~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~------rg~~~~~~~~~ 168 (432)
T PRK10406 107 SLVIACLPGYETIG------------TWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGR------KGFYASFQYVT 168 (432)
T ss_pred HHHHhhcCCchhHH------------HHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCc------ccHHHHHHHHH
Confidence 99888764311000 0123568899999999999999999999999999988 99999998888
Q ss_pred HhhhhHHHhhhhhhcc--------cccchhhhHHHHHHHHHHH
Q 045562 201 MCMGTFVTLTVLNYIQ--------DNLNWILGFGIPCILMVIA 235 (525)
Q Consensus 201 ~~~g~~~gp~~~~~l~--------~~~g~~~~f~~~~~~~~~~ 235 (525)
.+.|..+++.+...+. ..+|||.+|++.++..++.
T Consensus 169 ~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~ 211 (432)
T PRK10406 169 LIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVA 211 (432)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHH
Confidence 8888888877655443 2579999999877655443
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.9e-22 Score=210.47 Aligned_cols=156 Identities=13% Similarity=0.054 Sum_probs=128.2
Q ss_pred HHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhccCCCCccCCCCc
Q 045562 64 ITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVLGLGLLTLSAVLLSGSTSECQNTSC 143 (525)
Q Consensus 64 ~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 143 (525)
.+.+.+++|.+..+.+++.+.+.+++.++++++|+++||+ |||+++..+.++..++..+++.....
T Consensus 52 ~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~r~~l~~~~~~~~~~~~~~~~~~~~------------- 117 (467)
T PRK09556 52 QNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGK-NTKQFLPFLLILSAICMLGFGASLGS------------- 117 (467)
T ss_pred hHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhcc-CccchHHHHHHHHHHHHHHHHHHHhc-------------
Confidence 3457789999999999999999999999999999999999 99999998888877776666653110
Q ss_pred CCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhhHHHHhhhhHHHhhhhhhccccc---c
Q 045562 144 SANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWYFGMCMGTFVTLTVLNYIQDNL---N 220 (525)
Q Consensus 144 ~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l~~~~---g 220 (525)
...+.+.+++.|+++|++.+...|...++++|++|+++ |+++++++..+.++|..+++.+..++.+.+ +
T Consensus 118 --~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~ 189 (467)
T PRK09556 118 --GSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRK------RGRFLGFWNISHNLGGAGAGGVALWGANYFFDGH 189 (467)
T ss_pred --ccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccc------eeeeEEeeecccchhhhHHHHHHHHHHHhhccCc
Confidence 01237889999999999999999999999999999999 999999999999999999999887766543 5
Q ss_pred hhhhHHHHHHHHHHHHHHHHh
Q 045562 221 WILGFGIPCILMVIALVVFLL 241 (525)
Q Consensus 221 ~~~~f~~~~~~~~~~~~~~~~ 241 (525)
|+..|.+.++..++..+..+.
T Consensus 190 ~~~~f~~~g~~~~~~~i~~~~ 210 (467)
T PRK09556 190 VIGMFIFPSIIALIIGFIGLR 210 (467)
T ss_pred chhHHHHHHHHHHHHHHHHHH
Confidence 888888766655544333333
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.9e-21 Score=200.52 Aligned_cols=353 Identities=12% Similarity=0.078 Sum_probs=230.3
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHH
Q 045562 38 GWRSALFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIY 117 (525)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~ 117 (525)
|+|-.+...+..++.....+.....+|. +.+++|+|..+.+++.+.+.++..++.++.|+++||+ |||+++..+.++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~-i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~-g~r~~~~~~~~~~ 82 (394)
T PRK03699 5 RIKLTWISFLSYALTGALVIVTGMVMGP-IAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEII-PLKRQLIFGFALM 82 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHH
Confidence 4555666666666666666666666666 5568999999999999999999999999999999999 9999999999988
Q ss_pred HHHHHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhh
Q 045562 118 VLGLGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWW 197 (525)
Q Consensus 118 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 197 (525)
.++..++.+.++ .+.+++.|+++|++.+...+...+++.|.+|+++ |+++.+..
T Consensus 83 ~i~~~l~~~~~~--------------------~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~------r~~~~~~~ 136 (394)
T PRK03699 83 ILAVAGLMFSHS--------------------LALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQ------RGSRLLFT 136 (394)
T ss_pred HHHHHHHHHcch--------------------HHHHHHHHHHHHHhhHhhccchhHHhhhhcccch------HHHHHHHH
Confidence 888888877644 6788899999999999988999999999999887 99999988
Q ss_pred HHHHhhhhHHHhhhhhhcc-cccchhhhHHHHHHHHHHHHHHHHhcccceeecCCCCCCchhhhHHHHHHHHHhccccCC
Q 045562 198 YFGMCMGTFVTLTVLNYIQ-DNLNWILGFGIPCILMVIALVVFLLGTKIYRYSLKGEEKSPFLRIGQVFVTAVRNWRITP 276 (525)
Q Consensus 198 ~~~~~~g~~~gp~~~~~l~-~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (525)
+....+|+.++|.+.+++. +..|||++|.+.++..++..+..+.. + .++.++++ +. ..
T Consensus 137 ~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~~~~~~~~~~~-~-~p~~~~~~---~~--------------~~-- 195 (394)
T PRK03699 137 DSFFSMAGMIFPIIAAYLLARSIEWYWVYACIGLVYVAIFILTLFS-E-FPALGKHA---PK--------------AD-- 195 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhc-C-CccccccC---cc--------------cc--
Confidence 8888999999999988765 45799999988776555443333321 1 11100000 00 00
Q ss_pred chhhhHhhhhCCCCCCCccchhhhhHHHhhcCCCCCCCcccchhhHHHHHHHH-HHHHHHHHHHHHHHHHhhccchhhhh
Q 045562 277 SAIALEEEARGTLPHQSSEQFKFLNKALLASNGSKGYGKVCSVGEVEEAKALL-RLVPIWTTCLVYAIVFAQSSTFFTKQ 355 (525)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (525)
++ ..+.+| ++.++ ..+...+.....+....+.+.++.+.
T Consensus 196 ----------------~~--------------~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~ 235 (394)
T PRK03699 196 ----------------KP--------------VAKEKW----------GIGVLFLAIAALLYILAQLTFISWVPEYAQKK 235 (394)
T ss_pred ----------------Cc--------------cccccC----------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 001111 01111 11111111122222222233332221
Q ss_pred hhccccCcccccccChhhhhhhhhHHHHHHHHhhhhhhhhhhhhhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045562 356 GVTMDRSVVADFQIPAASLQSFISLAIVLTIPIYDRIFVPIARTFTRKPAGITMLQRIGTGMFLSAASMTGATLVEMKRL 435 (525)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~l~~r~~~~~~~~~~~~~i~ig~~l~~i~~~~~~~~~~~~~ 435 (525)
..++ ....+.+.....+...+..++.+. +.||+++| +.+.....+..+....+..
T Consensus 236 -~g~s-------~~~~~~~~~~~~~~~~ig~~~~g~----l~dr~~~~-------~~l~~~~~~~~~~~~~~~~------ 290 (394)
T PRK03699 236 -FGMS-------LEDAGNLVSNFWMAYMVGMWIFSF----IVRFFDLQ-------RILTVLAGLALVLMYLFVN------ 290 (394)
T ss_pred -cCCC-------hHHhhHHHHHHHHHHHHHHHHHHH----HHHHhchh-------hHHHHHHHHHHHHHHHHHH------
Confidence 1111 111222333334444555555544 56776544 4444444444444443332
Q ss_pred hhhhhcCCcCCCCCCccchHHHHHHHHHHHHHHHHHHhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 045562 436 KTAEEYGLVDKPNVTIPMSVWWLIPQYALLGVSEAFTMVGLQEFFYDQVPTELRSVGLSLYLSIFGVGSFLSSFLISAIE 515 (525)
Q Consensus 436 ~~~~~~g~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~~~~~~i~ 515 (525)
..+.+++....++.|++.+...+...++..+..|++ ++...|..+....+|..++|.+.|.+.
T Consensus 291 ----------------~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~g~~i~p~~~G~l~ 353 (394)
T PRK03699 291 ----------------TDDPSHLLYAILGLGFFSSAIYTTIITLGSQQTKVA-SPKLVNFILTCGTIGTMLTFVVTSPIV 353 (394)
T ss_pred ----------------cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC-CHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 124445555667778877777888888888877755 677888888889999999999999999
Q ss_pred hhccCC
Q 045562 516 NATGGD 521 (525)
Q Consensus 516 ~~~~~~ 521 (525)
+.+|..
T Consensus 354 ~~~g~~ 359 (394)
T PRK03699 354 AHFGLQ 359 (394)
T ss_pred HHhCch
Confidence 987654
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=6e-21 Score=199.11 Aligned_cols=349 Identities=12% Similarity=0.078 Sum_probs=207.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHH-HHHhhhhhHHHHhhhccchHHHH-HHHHHHH
Q 045562 40 RSALFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSG-VASLLPLFGAFLADSFLGRYRAI-IIASLIY 117 (525)
Q Consensus 40 ~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~-~~~~~~~~~G~lsD~~~Grr~~~-~~~~~~~ 117 (525)
...+..+...++.++....+.+.++.|+.+++|.|.++.|++.+...+ ...+.++++|+ +||+ ||||.+ ..+.++.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~-g~r~~~~~~~~~~~ 92 (393)
T PRK15011 15 LTSTAFLIVAFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKR-GDRKSLIVFCCLLG 92 (393)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-Hhcc-cchhHHHHHHHHHH
Confidence 356667777889999988899999999999999999999999876655 55555666666 9999 888765 4555555
Q ss_pred HHHHHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccc--eehh
Q 045562 118 VLGLGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKS--SFFN 195 (525)
Q Consensus 118 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~--~~~~ 195 (525)
.++..++.++.+ ++.+++.+.+.+...+...|...++..|..++++ |. ...+
T Consensus 93 ~~~~~~~~~~~~--------------------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~ 146 (393)
T PRK15011 93 VLACTLFAWNRN--------------------YFVLLFVGVFLSSFGSTANPQMFALAREHADKTG------REAVMFSS 146 (393)
T ss_pred HHHHHHHHHhhH--------------------HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhcc------chHHHHHH
Confidence 566655555543 4555444444443344567777788888776554 42 3346
Q ss_pred hhHHHHhhhhHHHhhhhhhcccccchhhhHHHHHHHHHHHHHHHHhcccceeecCCCCCCchhhhHHHHHHHHHhccccC
Q 045562 196 WWYFGMCMGTFVTLTVLNYIQDNLNWILGFGIPCILMVIALVVFLLGTKIYRYSLKGEEKSPFLRIGQVFVTAVRNWRIT 275 (525)
Q Consensus 196 ~~~~~~~~g~~~gp~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (525)
+.+.+.++|..+||.+++++.+++|||.+|++.++..++..+.++...|+.+++++++ + . . .
T Consensus 147 ~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~-----------~--~- 208 (393)
T PRK15011 147 FLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVWLFLPSMRKELPLA---T-G-----------T--L- 208 (393)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhcCccCCCCccc---c-c-----------c--c-
Confidence 7888899999999999999999899999999887666555444444334322111110 0 0 0 0
Q ss_pred CchhhhHhhhhCCCCCCCccchhhhhHHHhhcCCCCCCCcccchhhHHHHHHHHHHHHH-HHHHHHHHHHHhhccchhhh
Q 045562 276 PSAIALEEEARGTLPHQSSEQFKFLNKALLASNGSKGYGKVCSVGEVEEAKALLRLVPI-WTTCLVYAIVFAQSSTFFTK 354 (525)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~ 354 (525)
+ . . .++++..+..... ......++......+.++..
T Consensus 209 -----------------------------------~-~---~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~ 245 (393)
T PRK15011 209 -----------------------------------E-A---P----RRNRRDTLLLFVICTLMWGTNSLYIINMPLFIIN 245 (393)
T ss_pred -----------------------------------c-c---c----ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0 0 0000111111111 11111111111111221111
Q ss_pred hhhccccCcccccccChhhhhhhhhHHHHHHHHhhhhhhhhhhhhhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 045562 355 QGVTMDRSVVADFQIPAASLQSFISLAIVLTIPIYDRIFVPIARTFTRKPAGITMLQRIGTGMFLSAASMTGATLVEMKR 434 (525)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~l~~r~~~~~~~~~~~~~i~ig~~l~~i~~~~~~~~~~~~ 434 (525)
....+ ....+.+.....+..++..++.++ +.||+++| +.+..+.+...+.+......
T Consensus 246 -~~~~~-------~~~~g~~~~~~~~~~i~~~~~~G~----l~dr~g~~-------~~~~~~~~~~~~~~~~~~~~---- 302 (393)
T PRK15011 246 -ELHLP-------EKLAGVMMGTAAGLEIPTMLIAGY----FAKRLGKR-------FLMRVAAVAGVCFYAGMLMA---- 302 (393)
T ss_pred -HcCCC-------HHHHHHHHHHHHHHHHHHHHHHHH----HHHHhChH-------HHHHHHHHHHHHHHHHHHHH----
Confidence 11111 011122223333333344455444 67776654 44555555544443333221
Q ss_pred HhhhhhcCCcCCCCCCccchHHHHHHHHHHHHHHHHHHhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045562 435 LKTAEEYGLVDKPNVTIPMSVWWLIPQYALLGVSEAFTMVGLQEFFYDQVPTELRSVGLSLYLSIFGVGSFLSSFLISAI 514 (525)
Q Consensus 435 ~~~~~~~g~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~~~~~~i 514 (525)
.+.++.....++.+++.+...+....+..+..|++ ||+++++++....+|..+++.+.|.+
T Consensus 303 ------------------~~~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p~~-~g~~~~~~~~~~~lg~~~g~~l~G~i 363 (393)
T PRK15011 303 ------------------HSPAILLGLQLLNAIYIGILGGIGMLYFQDLMPGQ-AGSATTLYTNTSRVGWIIAGSLAGIV 363 (393)
T ss_pred ------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-cchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 13444445556666666666666677788888865 99999999999999999999999999
Q ss_pred hhhcc
Q 045562 515 ENATG 519 (525)
Q Consensus 515 ~~~~~ 519 (525)
.+..|
T Consensus 364 ~~~~g 368 (393)
T PRK15011 364 AEIWN 368 (393)
T ss_pred HHHhh
Confidence 88754
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=4e-21 Score=200.48 Aligned_cols=349 Identities=14% Similarity=0.086 Sum_probs=219.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHHH
Q 045562 40 RSALFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVL 119 (525)
Q Consensus 40 ~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~~ 119 (525)
|+.+.+....++..++...+...++.. .+++|.+..+.+++.+.+.+...+..+++|+++||+ |||++++++.++.++
T Consensus 3 ~~f~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~-grr~vl~~~~~~~~~ 80 (393)
T PRK11195 3 KGFYAIMAAQFFSALADNALLFAAIAL-LKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSF-PKGRVMFIANGIKLL 80 (393)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHH-HHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhcc-CCchhhHHHHHHHHH
Confidence 345666777777777655555555544 568899999999999999999999999999999999 999999999998888
Q ss_pred HHHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhhHH
Q 045562 120 GLGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWYF 199 (525)
Q Consensus 120 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 199 (525)
+.+++....+ .++.|+++|++.+...|+..+++.|.+|+++ |+++.++.+.
T Consensus 81 ~~~~~~~~~~-----------------------~~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~------~~~a~~~~~~ 131 (393)
T PRK11195 81 GCLLMLFGIH-----------------------PLLAYGLVGIGAAAYSPAKYGILTELLPGEK------LVKANGWMEG 131 (393)
T ss_pred HHHHHHHHHH-----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HHHHHHHHHH
Confidence 8777665432 2678999999999999999999999999988 9999999999
Q ss_pred HHhhhhHHHhhhhhhcccccchhhhHHHHHHHHHHHHHHHHhcccceeecCCCCCCchhhhHHHHHHHHHhccccCCchh
Q 045562 200 GMCMGTFVTLTVLNYIQDNLNWILGFGIPCILMVIALVVFLLGTKIYRYSLKGEEKSPFLRIGQVFVTAVRNWRITPSAI 279 (525)
Q Consensus 200 ~~~~g~~~gp~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (525)
..++|..+||.++|++.+. .|+..+.+.+.+.+++.+.....++ .+..+++.+.++. ...+..
T Consensus 132 ~~~~~~~~Gp~lgG~l~~~-~~~~~~~i~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~-~~~~~~-------------- 194 (393)
T PRK11195 132 STIAAILLGTVLGGALADP-HAEAALAVCALIYLLAALFNLFIPR-LGARRPGQSWNPI-ALLRDF-------------- 194 (393)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCC-CcccccccCCCHH-HHHHHH--------------
Confidence 9999999999999999885 4777777666554444333333322 1111111000110 000000
Q ss_pred hhHhhhhCCCCCCCccchhhhhHHHhhcCCCCCCCcccchhhHHHHHHHHHHHHH-HHHHHHHHHHHhhccchhhhhhhc
Q 045562 280 ALEEEARGTLPHQSSEQFKFLNKALLASNGSKGYGKVCSVGEVEEAKALLRLVPI-WTTCLVYAIVFAQSSTFFTKQGVT 358 (525)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 358 (525)
.+..+ ...+.+.+...... .+...........++. +..+...
T Consensus 195 --------------------~~~~~----------------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~lg 237 (393)
T PRK11195 195 --------------------FHACR----------------VLWRDKLGRFSLAGTTLFWGAGATLRFLVLA-WAPVALG 237 (393)
T ss_pred --------------------HHHHH----------------HHHhCchhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcC
Confidence 00000 01111111111111 0111111111111111 1111111
Q ss_pred cccCcccccccChhhhhhhhhHHHHHHHHhhhhhhhhhhhhhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 045562 359 MDRSVVADFQIPAASLQSFISLAIVLTIPIYDRIFVPIARTFTRKPAGITMLQRIGTGMFLSAASMTGATLVEMKRLKTA 438 (525)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~l~~r~~~~~~~~~~~~~i~ig~~l~~i~~~~~~~~~~~~~~~~ 438 (525)
. .....+.+.....+..++..++.++ +.+|.+ ..+.+..|. +.++........
T Consensus 238 ~-------s~~~~G~~~~~~~~g~i~g~~~~~~----l~~~~~-------~~~~~~~g~-~~~~~~~~~~~~-------- 290 (393)
T PRK11195 238 I-------TLNQPAYLQAVVAIGIAVGAGAAAR----LVTLET-------VLRVLPAGI-LMGLVVLLMALQ-------- 290 (393)
T ss_pred C-------ChhHHHHHHHHHHHHHHHHHHHHHH----HhcCCc-------ccchHHHHH-HHHHHHHHHHHH--------
Confidence 1 1112233444445555555555444 444432 224455554 333333333321
Q ss_pred hhcCCcCCCCCCccchHHHHHHHHHHHHHHHHHHhhhhHHHhhhccCchh-HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045562 439 EEYGLVDKPNVTIPMSVWWLIPQYALLGVSEAFTMVGLQEFFYDQVPTEL-RSVGLSLYLSIFGVGSFLSSFLISAI 514 (525)
Q Consensus 439 ~~~g~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~-rg~~~gi~~~~~~lg~~lg~~~~~~i 514 (525)
.++++.....++.|++.++..++.++.+++..|++. +|++.++.++.+.++..++..+.+.+
T Consensus 291 --------------~~~~~~~~~~~~~G~~~g~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~ 353 (393)
T PRK11195 291 --------------HSLLPAYPLLILIGALGGFFVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLL 353 (393)
T ss_pred --------------hHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHH
Confidence 255666667778899999988989999998877765 79999999999999999999998866
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.1e-20 Score=192.94 Aligned_cols=349 Identities=9% Similarity=-0.079 Sum_probs=223.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHH-HHHHH
Q 045562 42 ALFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASL-IYVLG 120 (525)
Q Consensus 42 ~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~-~~~~~ 120 (525)
.+.+....+....++-...+++|.|++ ++|.|..+++++.+.+.+...+.+++.|.++||+ ||++....... ...+.
T Consensus 6 ~~~l~~~~~~~~~~~~~~~p~l~~~l~-~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~l~ 83 (382)
T TIGR00902 6 FRWLALGFFGYFCAYGIFLPFFPAWLK-GIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDA-NHIIIALRLLALASAIF 83 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHH
Confidence 333455556666666667799999996 7899999999999999999999999999999998 87543322211 11111
Q ss_pred HH-HHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhhHH
Q 045562 121 LG-LLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWYF 199 (525)
Q Consensus 121 ~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 199 (525)
.. ++...+ +.+.+++.|++++.+.+...|...++..+. +++ |++.++....
T Consensus 84 ~~~~~~~~~--------------------~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~------~~~~~g~~~~ 135 (382)
T TIGR00902 84 AAAFSAGAH--------------------NAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQ------FGLDYGKVRL 135 (382)
T ss_pred HHHHHHhhh--------------------hHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHH------cCCCccHHHH
Confidence 11 222222 267888889999999888888888887543 344 8999999999
Q ss_pred HHhhhhHHHhhhhhhcccccchhhhHHHHHHHHHHHHHHHHhcccceeecCCCCCCchhhhHHHHHHHHHhccccCCchh
Q 045562 200 GMCMGTFVTLTVLNYIQDNLNWILGFGIPCILMVIALVVFLLGTKIYRYSLKGEEKSPFLRIGQVFVTAVRNWRITPSAI 279 (525)
Q Consensus 200 ~~~~g~~~gp~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (525)
..++|.+++|.+++++.+++||+..|.+..+...+.+ ..+..+++.+ +++++++ +
T Consensus 136 ~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~~~~~~~-~~~~~~~~~~---~~~~~~~-~-------------------- 190 (382)
T TIGR00902 136 IGSAAFIIGSALFGGLIGMFDEQNILAILTAGLAFML-IGFLIKPTIP---PKDAIPE-D-------------------- 190 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHH-HHHHcCCCCC---CCccccc-c--------------------
Confidence 9999999999999999999999999987665433222 2222222111 1110000 0
Q ss_pred hhHhhhhCCCCCCCccchhhhhHHHhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhcc
Q 045562 280 ALEEEARGTLPHQSSEQFKFLNKALLASNGSKGYGKVCSVGEVEEAKALLRLVPIWTTCLVYAIVFAQSSTFFTKQGVTM 359 (525)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (525)
+ ..+.+... ...++|+++...... ...+..+.++.++.+.+-.
T Consensus 191 -------------~-----------------~~~~~~~~--~~l~~~~~~~~l~~~---~l~~~~~~~~~~~~~~~l~-- 233 (382)
T TIGR00902 191 -------------E-----------------SQGDSAFI--ALLKNPMNLRFLAAV---CLIQGAHAAYYGFSAIYWQ-- 233 (382)
T ss_pred -------------c-----------------cccchhHH--HHHcChHHHHHHHHH---HHHHHHHHHHHHHHHHHHH--
Confidence 0 00000000 111122332222211 1112222222222221111
Q ss_pred ccCcccccccChhhhhhhhhHHHHHHHHhhhhhhhhhhhhhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 045562 360 DRSVVADFQIPAASLQSFISLAIVLTIPIYDRIFVPIARTFTRKPAGITMLQRIGTGMFLSAASMTGATLVEMKRLKTAE 439 (525)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~l~~r~~~~~~~~~~~~~i~ig~~l~~i~~~~~~~~~~~~~~~~~ 439 (525)
+ .+. .....+.......+..++..++. .++.|| .++++.+.++.++.++.+..+...
T Consensus 234 ~--~g~-s~~~~g~l~~~~~~~~i~~~~~~----~~l~~r-------~g~~~~l~~~~~~~~~~~~~~~~~--------- 290 (382)
T TIGR00902 234 A--AGI-SASATGLLWGIGVLAEIIIFAFS----NKLFQN-------CSARDLLLISAIACVGRWAIIGAI--------- 290 (382)
T ss_pred H--CCC-CHhHHHHHHHHHHHHHHHHHHHh----HHHHhh-------CCHHHHHHHHHHHHHHHHHHHHhH---------
Confidence 1 111 11112222233333333333333 335666 455588889999999998887764
Q ss_pred hcCCcCCCCCCccchHHHHHHHHHHHHHHHHHHhhhhHHHhhhccCchhHHHHHHHHH-HHHHHHHHHHHHHHHHhhhhc
Q 045562 440 EYGLVDKPNVTIPMSVWWLIPQYALLGVSEAFTMVGLQEFFYDQVPTELRSVGLSLYL-SIFGVGSFLSSFLISAIENAT 518 (525)
Q Consensus 440 ~~g~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~-~~~~lg~~lg~~~~~~i~~~~ 518 (525)
.+++.+....++.+++.++..+....++.+. |++.|++++++++ ...++|..+++.+.|.+.+..
T Consensus 291 -------------~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~ 356 (382)
T TIGR00902 291 -------------EAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTL 356 (382)
T ss_pred -------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3667777788999999999999999999988 9999999999987 577899999999999999987
Q ss_pred c
Q 045562 519 G 519 (525)
Q Consensus 519 ~ 519 (525)
|
T Consensus 357 g 357 (382)
T TIGR00902 357 G 357 (382)
T ss_pred c
Confidence 5
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-20 Score=202.93 Aligned_cols=175 Identities=17% Similarity=0.168 Sum_probs=128.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHH-HHH-----HHHHHHHHHHhhhhhHHHHhhhccchHHHHHHH
Q 045562 40 RSALFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTAT-AAE-----NVNAWSGVASLLPLFGAFLADSFLGRYRAIIIA 113 (525)
Q Consensus 40 ~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~-~~~-----~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~ 113 (525)
+.++...+..+++.+.+.. ..+...++.++++.+... ..+ +.++..++..++.++.|+++||+ |||+++.++
T Consensus 16 ~~~~~~~~g~~~~~~d~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~-Grr~~l~~~ 93 (490)
T PRK10642 16 KAITAASLGNAMEWFDFGV-YGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKY-GRQKILAIT 93 (490)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHH
Confidence 3344555666666665554 445556777777543321 121 24566778889999999999999 999999999
Q ss_pred HHHHHHHHHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCccccccccee
Q 045562 114 SLIYVLGLGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSF 193 (525)
Q Consensus 114 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 193 (525)
++++.++.++++++.+...... ++...+++.|+++|++.|+..+...++++|++|+++ |+++
T Consensus 94 ~~l~~i~~~~~a~~~~~~~~g~------------~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~------Rg~~ 155 (490)
T PRK10642 94 IVIMSISTFCIGLIPSYATIGI------------WAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRK------RGFM 155 (490)
T ss_pred HHHHHHHHHHHHhcccHHHHHH------------HHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCC------CcHH
Confidence 9999999999998755111000 011248899999999999999999999999999998 9999
Q ss_pred hhhhHHHHhhhhHHHhhhhhhcc--------cccchhhhHHHHHHHHHH
Q 045562 194 FNWWYFGMCMGTFVTLTVLNYIQ--------DNLNWILGFGIPCILMVI 234 (525)
Q Consensus 194 ~~~~~~~~~~g~~~gp~~~~~l~--------~~~g~~~~f~~~~~~~~~ 234 (525)
.++...+..+|..+|+.+...+. .++|||++|++.++..++
T Consensus 156 ~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~ 204 (490)
T PRK10642 156 GSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGII 204 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHH
Confidence 99988888888887776554332 368999999987654443
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.2e-21 Score=206.28 Aligned_cols=354 Identities=15% Similarity=0.055 Sum_probs=218.3
Q ss_pred HHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhccCCCCccCCCCcC
Q 045562 65 TYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVLGLGLLTLSAVLLSGSTSECQNTSCS 144 (525)
Q Consensus 65 ~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 144 (525)
..+.+++|.+..+.+++.+.+.+...++.+++|+++||+ |||++++.+.++..++.++++++.+
T Consensus 43 ~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~~--------------- 106 (455)
T TIGR00892 43 KELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRF-GCRPVVIAGGLLASLGMILASFSSN--------------- 106 (455)
T ss_pred HHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHc-CchHHHHhhHHHHHHHHHHHHHhhh---------------
Confidence 345679999999999999999988899999999999999 9999999999888888888877644
Q ss_pred CCchhHHHHHH-HHHHHHhccccCccchhhhhhccccCCCcccccccceehhhhHHHHhhhhHHHhhhhhhcccccchhh
Q 045562 145 ANQFQVIFFFF-SLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWYFGMCMGTFVTLTVLNYIQDNLNWIL 223 (525)
Q Consensus 145 ~~~~~~~~~~~-~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l~~~~g~~~ 223 (525)
.+.+++ .|++.|++.+...+...+++.+.+| ++ |+++.++.+.+..+|..++|.+++++.+.+|||+
T Consensus 107 -----~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~------r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~ 174 (455)
T TIGR00892 107 -----VIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RR------RPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRG 174 (455)
T ss_pred -----HHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hh------HHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHH
Confidence 455544 5688899998776777788889886 56 8999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhcccceeecCCCCCCchhhhHHHHHHHHHhccccCCchhhhHhhhhCCCCCCCccchhhhhHH
Q 045562 224 GFGIPCILMVIALVVFLLGTKIYRYSLKGEEKSPFLRIGQVFVTAVRNWRITPSAIALEEEARGTLPHQSSEQFKFLNKA 303 (525)
Q Consensus 224 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (525)
+|++.+++.+++.+..++.++..+.....+ .... . ..+. +...++.......
T Consensus 175 ~f~~~~~~~~~~~v~~~~~~~~~~~~~~~~--~~~~-----------~-~~~~-----------~~~~~~~~~~~~~--- 226 (455)
T TIGR00892 175 SFLILGGLLLHCCVCGALMRPVGPSQRVSK--SKSK-----------E-GLPP-----------DGSTKKLSKKSTA--- 226 (455)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCccccccc--cccc-----------c-cCCC-----------CCccccccccchh---
Confidence 999988776655544444433211100000 0000 0 0000 0000000000000
Q ss_pred HhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhccccCcccccccChhhhhhhhhHHHH
Q 045562 304 LLASNGSKGYGKVCSVGEVEEAKALLRLVPIWTTCLVYAIVFAQSSTFFTKQGVTMDRSVVADFQIPAASLQSFISLAIV 383 (525)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 383 (525)
.+..++.+. ....++.++..... .......+......+..+.. + .+. .....+.+.....+..+
T Consensus 227 -----~~~~~~~~~---~~~~~~~~~~~~~~---~~l~~~~~~~~~~~l~~~~~--~--~g~-s~~~~g~~~~~~~~~~~ 290 (455)
T TIGR00892 227 -----EKINRFLDF---SLFTHRGFLVYLSG---NVIMFLGFFAPIIFLVPYAK--D--KGV-DEYEAAFLLSIIGFVDI 290 (455)
T ss_pred -----hhhhhhcch---HHhcCchHHHHHHH---HHHHHHHccchHHHHHHHHH--H--cCC-CHHHHHHHHHHHHHHHH
Confidence 000000000 01111222221111 11111111111112222111 1 111 11222334455555556
Q ss_pred HHHHhhhhhhhhhhhhhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCcCCCCCCccchHHHHHHHHH
Q 045562 384 LTIPIYDRIFVPIARTFTRKPAGITMLQRIGTGMFLSAASMTGATLVEMKRLKTAEEYGLVDKPNVTIPMSVWWLIPQYA 463 (525)
Q Consensus 384 ~~~~l~~~~~~~l~~r~~~~~~~~~~~~~i~ig~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~ 463 (525)
+..|+.+. +.||...+ ......+..+.++.+++.+..... .+.+.++...+
T Consensus 291 ~~~~~~g~----l~d~~~~~---~~~~~~~~~~~~~~~l~~ll~~~~----------------------~~~~~~~i~~~ 341 (455)
T TIGR00892 291 FARPSCGL----IAGLKWIR---PHVQYLFSFALLFNGLTHLLCALA----------------------GDYTGLVIYCI 341 (455)
T ss_pred HHHHHHHH----HhcccccC---HHHHHHHHHHHHHHHHHHHHHHHh----------------------chHHHHHHHHH
Confidence 66666555 44442111 011122333444444444433321 35666777788
Q ss_pred HHHHHHHHHhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 045562 464 LLGVSEAFTMVGLQEFFYDQVPTELRSVGLSLYLSIFGVGSFLSSFLISAIENATG 519 (525)
Q Consensus 464 l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~~~~~~i~~~~~ 519 (525)
+.|++.+...+...+.+.+.+|++.+|++.|++++...+|+++|+.+.|.+.+.++
T Consensus 342 ~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g 397 (455)
T TIGR00892 342 FFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATK 397 (455)
T ss_pred HHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcC
Confidence 88999999999999999999999999999999999999999999999999988765
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.3e-20 Score=199.15 Aligned_cols=171 Identities=14% Similarity=0.161 Sum_probs=124.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHH-HHHHHH-----HHHhhhhhHHHHhhhccchHHHHHHH
Q 045562 40 RSALFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAEN-VNAWSG-----VASLLPLFGAFLADSFLGRYRAIIIA 113 (525)
Q Consensus 40 ~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~-~~~~~~-----~~~~~~~~~G~lsD~~~Grr~~~~~~ 113 (525)
+.........++..+....+ .+..+.+.++++.+..+.+.. .+...+ ...++.++.|+++||+ |||+.++.+
T Consensus 15 ~~~~~~~~~~~~~~~d~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~-Grr~~l~~~ 92 (434)
T PRK15075 15 RAILRVTSGNFLEMFDFFLF-GFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRV-GRRKGLIVT 92 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhh-chHHHHHHH
Confidence 34455555566665555544 445557778898887765433 222222 1235788999999999 999999999
Q ss_pred HHHHHHHHHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCccccccccee
Q 045562 114 SLIYVLGLGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSF 193 (525)
Q Consensus 114 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 193 (525)
.+++.++.++++++.+...... .....+++.|+++|++.+...+....+++|++|+++ |+++
T Consensus 93 ~~~~~~~~~l~~~~~~~~~~~~------------~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~------rg~~ 154 (434)
T PRK15075 93 LSIMASGTLLIAFVPGYATIGL------------AAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGR------KGFY 154 (434)
T ss_pred HHHHHHHHHHHHhCCcHHHHHH------------HHHHHHHHHHHHhhccccccHHHHHHHHHhhCCccc------chHH
Confidence 9999999999888754100000 001246899999999999999999999999999998 9999
Q ss_pred hhhhHHHHhhhhHHHhhhhhhc--------ccccchhhhHHHHHH
Q 045562 194 FNWWYFGMCMGTFVTLTVLNYI--------QDNLNWILGFGIPCI 230 (525)
Q Consensus 194 ~~~~~~~~~~g~~~gp~~~~~l--------~~~~g~~~~f~~~~~ 230 (525)
.++.....++|..+++.+++.+ .+.+|||++|++.++
T Consensus 155 ~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~ 199 (434)
T PRK15075 155 TSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCL 199 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHH
Confidence 9998888888888887777665 256899999987543
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.3e-21 Score=201.19 Aligned_cols=370 Identities=12% Similarity=0.010 Sum_probs=221.3
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHH
Q 045562 39 WRSALFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYV 118 (525)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~ 118 (525)
.++.|.+....++..++++.+.++++.|+++++|+|..+.+.+.+.+.+...+++++.|+++||+ |||+++.++..+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~-g~r~~~~~~~~~~~ 87 (420)
T PRK09528 9 NPNYWIFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKL-GLKKHLLWIISGLL 87 (420)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHH
Confidence 34677777778888888888899999999999999999999999999999999999999999999 99999988766555
Q ss_pred HHHHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhhH
Q 045562 119 LGLGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWY 198 (525)
Q Consensus 119 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 198 (525)
++...+......+.. ........++.++..+...+.....+.++.++..+ .++..++..+
T Consensus 88 ~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~g~~~g~~~ 147 (420)
T PRK09528 88 VLFGPFFIYVFAPLL----------------QYNILLGAIVGGIYLGFGFLAGAGAIEAYIERVSR----RSGFEYGRAR 147 (420)
T ss_pred HHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHhhhhhccchhhhhhHHHHHHh----hccccchhhH
Confidence 443322211000000 00111122222333332222222333333332111 1677888888
Q ss_pred HHHhhhhHHHhhhhhhcccccchhhhHHHHHHHHHHHHHHHHhcccceeecCCCCCCchhhhHHHHHHHHHhccccCCch
Q 045562 199 FGMCMGTFVTLTVLNYIQDNLNWILGFGIPCILMVIALVVFLLGTKIYRYSLKGEEKSPFLRIGQVFVTAVRNWRITPSA 278 (525)
Q Consensus 199 ~~~~~g~~~gp~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (525)
...++|..++|.+++++.+ .+|+.+|++.++..++.++..+..+++.+++...+ +. . +
T Consensus 148 ~~~~~g~~i~~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~----------~-------- 205 (420)
T PRK09528 148 MWGSLGWALCAFIAGILFN-INPQINFWLGSGSALILLVLLFFAKPDAPSTAKVA--NA-L----------G-------- 205 (420)
T ss_pred HhhhHHHHHHHHHHHHHHh-cCchHhHHHHHHHHHHHHHHHhcccccccchhhhc--cc-h----------h--------
Confidence 8889999999999999876 58999998887666655555444433211110000 00 0 0
Q ss_pred hhhHhhhhCCCCCCCccchhhhhHHHhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHH-hhccchhhhhhh
Q 045562 279 IALEEEARGTLPHQSSEQFKFLNKALLASNGSKGYGKVCSVGEVEEAKALLRLVPIWTTCLVYAIVF-AQSSTFFTKQGV 357 (525)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 357 (525)
.+++...+.+... ..+ ++.++............+..+ .+++.++..+..
T Consensus 206 -------------~~~~~~~~~~~~~----------------~l~-~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (420)
T PRK09528 206 -------------ANASAVSLKDALA----------------LLK-LPKFWFLVLYVIGVACFYDVFDQQFPNFFASFFA 255 (420)
T ss_pred -------------cccccccHHHHHH----------------Hcc-CCCeEeehHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 0000000000000 000 111111111111111112222 222333222111
Q ss_pred ccccCcccccccChhhhhhhhhHHHHHHHHhhhhhhhhhhhhhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 045562 358 TMDRSVVADFQIPAASLQSFISLAIVLTIPIYDRIFVPIARTFTRKPAGITMLQRIGTGMFLSAASMTGATLVEMKRLKT 437 (525)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~l~~r~~~~~~~~~~~~~i~ig~~l~~i~~~~~~~~~~~~~~~ 437 (525)
+... .....+.+.....+...+..++.++ +.||+++| +.+..+.++.+++.+...+.
T Consensus 256 --~~~~---~~~~~g~~~~~~~~~~~~~~~~~g~----l~dr~g~~-------~~~~~~~~l~~~~~~l~~~~------- 312 (420)
T PRK09528 256 --TPEQ---GTRVFGYLNSFQVFLEALIMFFAPF----IINRIGAK-------NALLLAGTIMAVRIIGSGFA------- 312 (420)
T ss_pred --ccCc---chHHHHHHHHHHHHHHHHHHHHHHH----HHHHhCcc-------hhhHHHHHHHHHHHHHHHhc-------
Confidence 1000 0011223444444445555555555 77886655 56777777777777776653
Q ss_pred hhhcCCcCCCCCCccchHHHHHHHHHHHHHHHHHHhhhhHHHhhhccCchhHHHHHHH-HHHHHHHHHHHHHHHHHHhhh
Q 045562 438 AEEYGLVDKPNVTIPMSVWWLIPQYALLGVSEAFTMVGLQEFFYDQVPTELRSVGLSL-YLSIFGVGSFLSSFLISAIEN 516 (525)
Q Consensus 438 ~~~~g~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi-~~~~~~lg~~lg~~~~~~i~~ 516 (525)
.++++++...++.+++.....+...+++.+..|++.+++..++ +++...+|+.+++.+.|++.+
T Consensus 313 ---------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~ 377 (420)
T PRK09528 313 ---------------TGPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYD 377 (420)
T ss_pred ---------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHH
Confidence 3566677778888888888888888999999999999988766 788899999999999999998
Q ss_pred hcc
Q 045562 517 ATG 519 (525)
Q Consensus 517 ~~~ 519 (525)
..|
T Consensus 378 ~~G 380 (420)
T PRK09528 378 SIG 380 (420)
T ss_pred hhC
Confidence 775
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.5e-23 Score=212.92 Aligned_cols=362 Identities=35% Similarity=0.576 Sum_probs=231.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCccc
Q 045562 107 YRAIIIASLIYVLGLGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLE 186 (525)
Q Consensus 107 r~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~ 186 (525)
+|++.++.+++.+|.+++.++..++.. +.+.+...++++.+++++|.|+.+|+..++++|+++++++.
T Consensus 1 yktI~~g~~~~~~G~~ll~l~~~~~~~-----------~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~- 68 (372)
T PF00854_consen 1 YKTILLGSIVYLLGHVLLTLSAIPPSL-----------PSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDS- 68 (372)
T ss_dssp HHHHHHHHHHHHHHHHH--HHHTSSSC-----------------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTT-
T ss_pred CHhhhHHHHHHHHHHHHhHHHHhcchh-----------hhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchh-
Confidence 478999999999999998877654333 12234678999999999999999999999999999977422
Q ss_pred ccccceehhhhHHHHhhhhHHHhhhhhhcccccchhhhHHHHHHHHHHHHHHHHhcccceeec-CCCCCCchhhhHH-HH
Q 045562 187 SKLKSSFFNWWYFGMCMGTFVTLTVLNYIQDNLNWILGFGIPCILMVIALVVFLLGTKIYRYS-LKGEEKSPFLRIG-QV 264 (525)
Q Consensus 187 ~~~r~~~~~~~~~~~~~g~~~gp~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~ 264 (525)
.|.++++++|++.|+|..+++.+.+++.++.||...|.++.+.++++++.++..++++++. ++.+ ++..+.. ..
T Consensus 69 --~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~~~~y~~~~~~~~--~~~~~~~~~~ 144 (372)
T PF00854_consen 69 --RRDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSGRKRYRKVAPPGG--SPLTNFIKLV 144 (372)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCCCCTT--S-------S--S--SHHH
T ss_pred --hhhhhHHHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhCCcCCcCcCccCC--cccchhHHHH
Confidence 2899999999999999999999999999999999999999999999999999999888776 4444 5555522 23
Q ss_pred HHHHHhccccCCchhhh-Hhh---hhCCCCCCCccchhhhhHHHhhcCCCCCCCcc-cchhhHHHHHHHHHHHHHHHHHH
Q 045562 265 FVTAVRNWRITPSAIAL-EEE---ARGTLPHQSSEQFKFLNKALLASNGSKGYGKV-CSVGEVEEAKALLRLVPIWTTCL 339 (525)
Q Consensus 265 ~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~ 339 (525)
.....++.....+.... ..+ ......... .... ...... .......++. .+.+++++.+.+.+.+..+...+
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~i 221 (372)
T PF00854_consen 145 LVAAFKKRKLAVPKGSSWLDWALFQYSERSIFG-IIVF-IRAAVI-FFPEIFFWALFCQVQRVEELKALIRFLPIFLFWI 221 (372)
T ss_dssp HHHHHHHHCCCH-HHHHHHHHHHHHHCCCCCCC-CCCH-HHHHHH-HCCCHHHHTTTSSTTTHHHCCHHHCHHHCCCHHH
T ss_pred HHHHHHHhhcccccchHHHHHhhhhhhhhhhhh-hhhh-ccchhh-hhhhhhhcccCCccceeeeeeeeeeccccCeEEE
Confidence 33333333332211111 110 100000000 0000 000000 0000000110 11223555556666666666666
Q ss_pred HHHHHHhhccchhhhhhhccccCcccccccChhhhhhhhhHHHHHHHHhhhhhhhhhhhhhccCCCCCCchHHHHHHHHH
Q 045562 340 VYAIVFAQSSTFFTKQGVTMDRSVVADFQIPAASLQSFISLAIVLTIPIYDRIFVPIARTFTRKPAGITMLQRIGTGMFL 419 (525)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~l~~r~~~~~~~~~~~~~i~ig~~l 419 (525)
.+...+.+...+...+...++....+.++.|+++++++|++.++++.|+++++++|+.+ .+ +..++..++.+|+++
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~l~~~n~i~iii~~pi~~~~~~p~~~-~~---~~~~~~~k~~~G~~~ 297 (372)
T PF00854_consen 222 FYWQMYSQLNTFFLLQVPQMDRGIGGLFGIPPAWLQSFNPIFIIIFIPILDRVVYPLLR-RG---IQPSPPQKFGIGMVF 297 (372)
T ss_dssp HHHHHCTCCHHHHHHCGGGTTT-SS------SGGGTTHHHHHCHHHHHHHHHHCCCTTT-T---------HHHHHHH-HH
T ss_pred EeeehhhhhhhHHHHhccccccccccccccccchhhhHHHHHHHHHHHHHHHHHhHHhh-hc---ccchhhhhhhHHHHH
Confidence 77777777777777776667655554588999999999999999999999999999988 22 237889999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcCCcCCCCCCccchHHHHHHHHHHHHHHHHHHhhhhHHHhhhccCchhHHHHHHHHHHH
Q 045562 420 SAASMTGATLVEMKRLKTAEEYGLVDKPNVTIPMSVWWLIPQYALLGVSEAFTMVGLQEFFYDQVPTELRSVGLSLYLSI 499 (525)
Q Consensus 420 ~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~ 499 (525)
..++.+....++..+....+++| ..+.+|.+..+++..++|.+.++.+.+...+.+|++..+..+|++...
T Consensus 298 ~~~~~~~~~~v~~~r~~~~~~~~---------~~~~~~~~~~~~~~~~~e~~l~~~g~~~~~~~a~~~~p~~m~~~~~~~ 368 (372)
T PF00854_consen 298 AILAMFVAAIVEIRRLCYAQPCG---------KVSPWWQVPMYIFWLIPEYFLSGTGESAAYEFAPSRAPSSMMGIWFAL 368 (372)
T ss_dssp HHHHHHTTTHHHH---HH----T---------T--THHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTT-SSSSTHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhcccccC---------CCChhhHHHHHHHHHHHHHHhhHHHHHHHHHhhHHhhhHHHHHHHHHH
Confidence 99999999988876655554544 345577789999999999999999999777777777777777776654
Q ss_pred H
Q 045562 500 F 500 (525)
Q Consensus 500 ~ 500 (525)
.
T Consensus 369 ~ 369 (372)
T PF00854_consen 369 S 369 (372)
T ss_dssp H
T ss_pred h
Confidence 4
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1e-20 Score=201.00 Aligned_cols=156 Identities=11% Similarity=0.083 Sum_probs=124.3
Q ss_pred HHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhccCCCCccCCC
Q 045562 62 NLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVLGLGLLTLSAVLLSGSTSECQNT 141 (525)
Q Consensus 62 ~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 141 (525)
+..+|+.++ |.+..+.+++.+.+.++..+++++.|+++||+ |||++++++.++.+++.+++.+....
T Consensus 50 ~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~-g~k~~l~~~~~~~~i~~~~~~~~~~~----------- 116 (452)
T PRK11273 50 LAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAAAVMLFMGFVPWA----------- 116 (452)
T ss_pred HhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhcc-CCchhHHHHHHHHHHHHHHHHhhhcc-----------
Confidence 344567777 99999999999999999999999999999999 99999999999888888877765310
Q ss_pred CcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhhHHHHhhhhH-HHhhhhhhcccccc
Q 045562 142 SCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWYFGMCMGTF-VTLTVLNYIQDNLN 220 (525)
Q Consensus 142 ~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~-~gp~~~~~l~~~~g 220 (525)
+.+.+.+++.|++.|++.+...|.....+.|++|+++ |++++++++.+.++|.. .+|+.+..+....|
T Consensus 117 -----~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~g 185 (452)
T PRK11273 117 -----TSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------RGGIVSVWNCAHNVGGGLPPLLFLLGMAWFND 185 (452)
T ss_pred -----cccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHH------HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcc
Confidence 0125678888999999999988888888999999988 99999999999998864 45554433333458
Q ss_pred hhhhHHHHHHHHHHHHHHHHh
Q 045562 221 WILGFGIPCILMVIALVVFLL 241 (525)
Q Consensus 221 ~~~~f~~~~~~~~~~~~~~~~ 241 (525)
||+.|++.+++.++..++.++
T Consensus 186 w~~~f~i~~~~~~~~~~l~~~ 206 (452)
T PRK11273 186 WHAALYMPAFAAILVALFAFA 206 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999877665554443333
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.89 E-value=7e-21 Score=202.99 Aligned_cols=150 Identities=14% Similarity=0.143 Sum_probs=130.4
Q ss_pred ccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhccCCCCccCCCCcCCCchh
Q 045562 70 PLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVLGLGLLTLSAVLLSGSTSECQNTSCSANQFQ 149 (525)
Q Consensus 70 ~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (525)
+++++..+.|.+.+.+.+++.++++++|+++||+ |||+++..+.++..++.+++..... ..
T Consensus 70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~~------------------~~ 130 (465)
T TIGR00894 70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKY-VFKWSIGIGMFLSSVISIVIPWAAG------------------GG 130 (465)
T ss_pred CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHh-CcchhhHHHHHHHHHHHHHHHHHHH------------------cC
Confidence 6899999999999999999999999999999999 9999999999888888777654422 11
Q ss_pred HHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhhHHHHhhhhHHHhhhhhhccccc-chhhhHHHH
Q 045562 150 VIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWYFGMCMGTFVTLTVLNYIQDNL-NWILGFGIP 228 (525)
Q Consensus 150 ~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l~~~~-g~~~~f~~~ 228 (525)
.+.+++.|+++|++.+...|....+++|++|+++ |++++++.+.+.++|..++|.+++++.+.+ ||+.+|++.
T Consensus 131 ~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~ 204 (465)
T TIGR00894 131 IALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKE------RSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVF 204 (465)
T ss_pred chHHHHHHHHHHHhcccchhhHHHHHHhcCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhh
Confidence 5678899999999999999999999999999998 999999999999999999999999999884 999999998
Q ss_pred HHHHHHHHHHHHhccc
Q 045562 229 CILMVIALVVFLLGTK 244 (525)
Q Consensus 229 ~~~~~~~~~~~~~~~~ 244 (525)
++..++..+.++...+
T Consensus 205 ~~~~~~~~~~~~~~~~ 220 (465)
T TIGR00894 205 GIVGCAWSLLWFVFPA 220 (465)
T ss_pred hHHHHHHHHHHHHHhc
Confidence 8776655554444443
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.4e-20 Score=194.66 Aligned_cols=369 Identities=10% Similarity=0.012 Sum_probs=228.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHHH
Q 045562 40 RSALFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVL 119 (525)
Q Consensus 40 ~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~~ 119 (525)
|..|.+....++...+...+.+++|.|+++++|.+..+.+++.+.+.+...+++++.|+++||+ |||+.++.+....++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~ 80 (396)
T TIGR00882 2 TNFWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKL-GLKKHLLWIISGLLV 80 (396)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHH
Confidence 3567777778888888888899999999999999999999999999999999999999999999 999999887666554
Q ss_pred HHHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhhHH
Q 045562 120 GLGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWYF 199 (525)
Q Consensus 120 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 199 (525)
+...+......+... .......++.+++.|++.+...|...++..|..+ + ++..++....
T Consensus 81 ~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~------~~~~~g~~~~ 140 (396)
T TIGR00882 81 LFAPFFIYVFGPLLQ------------SNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSR--N------SNFEYGKARM 140 (396)
T ss_pred HHHHHHHHHhhhHHH------------HHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhh--h------cccccchhhh
Confidence 433322110000000 0012345667788888888888887777666432 2 4456777778
Q ss_pred HHhhhhHHHhhhhhhcccccchhhhHHHHHHHHHHHHHHHHhcccceeecCCCCCCchhhhHHHHHHHHHhccccCCchh
Q 045562 200 GMCMGTFVTLTVLNYIQDNLNWILGFGIPCILMVIALVVFLLGTKIYRYSLKGEEKSPFLRIGQVFVTAVRNWRITPSAI 279 (525)
Q Consensus 200 ~~~~g~~~gp~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (525)
..++|..+||.+++.+.+ .+|+.+|++.+++.++..+..+...++.++ ++ +. .+ ..+.
T Consensus 141 ~~~~g~~~g~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~---~~--~~-~~-------~~~~-------- 198 (396)
T TIGR00882 141 FGCVGWALCASIAGILFS-IDPQIVFWLGSGFALILMLLLMFAKPKAPS---SA--TV-AN-------ALGA-------- 198 (396)
T ss_pred hcccHHHHHHHHHhhhhc-cCchHHHHHHHHHHHHHHHHHHHhCCCCch---hh--hh-hc-------cccc--------
Confidence 889999999999998876 599999998877666555444433332111 00 00 00 0000
Q ss_pred hhHhhhhCCCCCCCccchhhhhHHHhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHH-hhccchhhhhhhc
Q 045562 280 ALEEEARGTLPHQSSEQFKFLNKALLASNGSKGYGKVCSVGEVEEAKALLRLVPIWTTCLVYAIVF-AQSSTFFTKQGVT 358 (525)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 358 (525)
+.++.+..+.. +..+.|.++..+.........+..+ .+.+.++..+.
T Consensus 199 ----------~~~~~~~~~~~--------------------~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~y~~~~~-- 246 (396)
T TIGR00882 199 ----------NASAFSLKLAL--------------------ELFRQRKFWMFVLYVVGVACVYDVFDQQFANFFTSFF-- 246 (396)
T ss_pred ----------ccCCCCHHHHH--------------------HHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--
Confidence 00000000000 0111112222221111111111122 12222222211
Q ss_pred cccCcccccccChhhhhhhhhHHHHHHHHhhhhhhhhhhhhhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 045562 359 MDRSVVADFQIPAASLQSFISLAIVLTIPIYDRIFVPIARTFTRKPAGITMLQRIGTGMFLSAASMTGATLVEMKRLKTA 438 (525)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~l~~r~~~~~~~~~~~~~i~ig~~l~~i~~~~~~~~~~~~~~~~ 438 (525)
.. .+. .....+.+.....+...+.....+ ++.||+++| +.+.++.++.++.+......
T Consensus 247 -~~-~~~-~~~~~g~~~~~~~i~~~~~~~~~g----~l~~r~g~~-------~~l~~~~~l~~l~~~~~~~~-------- 304 (396)
T TIGR00882 247 -AT-PQQ-GTRVFGYVTTMGELLNALIMFCAP----LIINRIGAK-------NALLIAGTIMSVRIIGSSFA-------- 304 (396)
T ss_pred -cc-ccc-chHHHHHHHHHHHHHHHHHHHHHH----HHHHHhccc-------hhHHHHHHHHHHHHHHHHhc--------
Confidence 10 000 000112233333444444444443 477886655 56777777777776665542
Q ss_pred hhcCCcCCCCCCccchHHHHHHHHHHHHHHHHHHhhhhHHHhhhccCchhHHHHHHH-HHHHHHHHHHHHHHHHHHhhhh
Q 045562 439 EEYGLVDKPNVTIPMSVWWLIPQYALLGVSEAFTMVGLQEFFYDQVPTELRSVGLSL-YLSIFGVGSFLSSFLISAIENA 517 (525)
Q Consensus 439 ~~~g~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi-~~~~~~lg~~lg~~~~~~i~~~ 517 (525)
.+++++.+..++.+++.........++..+..|++.+++..++ +++...+|+.+++.+.|++.+.
T Consensus 305 --------------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~ 370 (396)
T TIGR00882 305 --------------TTALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDS 370 (396)
T ss_pred --------------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHh
Confidence 3566677778888888877777777888888899999887776 6789999999999999999998
Q ss_pred cc
Q 045562 518 TG 519 (525)
Q Consensus 518 ~~ 519 (525)
+|
T Consensus 371 ~G 372 (396)
T TIGR00882 371 IG 372 (396)
T ss_pred cc
Confidence 75
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.4e-21 Score=193.20 Aligned_cols=381 Identities=14% Similarity=0.046 Sum_probs=249.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHH---HHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHH
Q 045562 40 RSALFIIGVEMAERFAYYGVSSN---LITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLI 116 (525)
Q Consensus 40 ~~~~~~~~~~~~~~~~~y~~~~~---l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~ 116 (525)
|.-+.++...++...++|.+--. ..+++.++.++|.++.|.+.+++.+.+.++.++.|.++||. +.|..+-.++++
T Consensus 25 ~~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~-npr~fm~~gLil 103 (448)
T COG2271 25 RWRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRS-NPRYFMAFGLIL 103 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccC-CCceeehHHHHH
Confidence 34456677777777777776543 34688889999999999999999999999999999999999 999999999999
Q ss_pred HHHHHHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhh
Q 045562 117 YVLGLGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNW 196 (525)
Q Consensus 117 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 196 (525)
.++..+++++..+ .+.+.+.-++.|+.+|.-.|++...++.++|++| ||+..++
T Consensus 104 sai~nil~Gfs~s--------------------~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~e------RG~~~si 157 (448)
T COG2271 104 SAIVNILFGFSPS--------------------LFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKE------RGTWWSI 157 (448)
T ss_pred HHHHHHHHhhhhH--------------------HHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccc------cCceEEE
Confidence 9999999999865 7888888999999999999999999999999999 9999999
Q ss_pred hHHHHhhhhHHHhhhh--hhcccccchhhhHHHHHHHHHHHHHHHHhcccceeecCCCCCCchhhhHHHHHHHHHhcccc
Q 045562 197 WYFGMCMGTFVTLTVL--NYIQDNLNWILGFGIPCILMVIALVVFLLGTKIYRYSLKGEEKSPFLRIGQVFVTAVRNWRI 274 (525)
Q Consensus 197 ~~~~~~~g~~~gp~~~--~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (525)
++.+-|+|+.+.|++. +++..+++||..|++++++.++.-+.++...|+.+++..- .+..
T Consensus 158 Wn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~Pqs~GL---P~ie--------------- 219 (448)
T COG2271 158 WNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQSEGL---PPIE--------------- 219 (448)
T ss_pred ehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCCccccCC---CCHH---------------
Confidence 9999999999999999 9999989999999999977666544444444433322110 1100
Q ss_pred CCchhhhHhhhhCCCCCCCccchhhhhHHHhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccc---h
Q 045562 275 TPSAIALEEEARGTLPHQSSEQFKFLNKALLASNGSKGYGKVCSVGEVEEAKALLRLVPIWTTCLVYAIVFAQSST---F 351 (525)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~ 351 (525)
+..+|......++++. .....++...+-+-..|.++.+ .+..+..|.+.+.+.. .
T Consensus 220 ------~~~~d~~e~~~~~~~~-------------~~ls~~~i~~~YVL~Nk~iW~l---a~a~vfvYivR~gi~dW~p~ 277 (448)
T COG2271 220 ------EYRGDPLEIYEEEKEN-------------EGLTAWQIFVKYVLKNKLIWLL---ALANVFVYVVRYGINDWGPL 277 (448)
T ss_pred ------HhhcCchhhhhhhccC-------------CCccHHHHHHHHHHcChHHHHH---HHHHHHHHHHHHHHhhhHHH
Confidence 0000000000000000 0001011111112222333322 2334444444444432 2
Q ss_pred hhhhhhccccCcccccccChhhhhhhhhHHHHHHHHhhhhhhhhhhhhhccCCCCCCchHHHHHHHHHHHHHHHHHHHHH
Q 045562 352 FTKQGVTMDRSVVADFQIPAASLQSFISLAIVLTIPIYDRIFVPIARTFTRKPAGITMLQRIGTGMFLSAASMTGATLVE 431 (525)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~l~~r~~~~~~~~~~~~~i~ig~~l~~i~~~~~~~~~ 431 (525)
+..+..+.+ .....+.....-...+....+.+. +.||+.+-+| . ....+.+++..++.+.+...+
T Consensus 278 YL~e~k~~s-------~~~a~~a~~lfE~agl~G~Ll~Gw----lSDklfkgrR--~--p~~~i~~~~i~~~~~~~w~~~ 342 (448)
T COG2271 278 YLSEVKGFS-------LVKANWAISLFEVAGLPGTLLAGW----LSDKLFKGRR--G--PMALIFMLLITASLVLYWLAP 342 (448)
T ss_pred HHHHhcCCC-------HHHHHHHHHHHHHHhhHHHHHHHH----HHHHhccccc--c--hHHHHHHHHHHHHHHHHHcCC
Confidence 333222222 122334445555666666666665 5666542211 1 122333333444444333321
Q ss_pred HHHHhhhhhcCCcCCCCCCccchHHHHHHHHHHHHHHHHHHhhhhHHHhhhccCchhHHHHHHHHHHHHHH-HHHHHHHH
Q 045562 432 MKRLKTAEEYGLVDKPNVTIPMSVWWLIPQYALLGVSEAFTMVGLQEFFYDQVPTELRSVGLSLYLSIFGV-GSFLSSFL 510 (525)
Q Consensus 432 ~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~l-g~~lg~~~ 510 (525)
..+.+.....++.+|+-.-...-..-..+.|.+|++..|++.|+..++..+ |+.++...
T Consensus 343 --------------------~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~ 402 (448)
T COG2271 343 --------------------NGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLP 402 (448)
T ss_pred --------------------CccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCc
Confidence 134555566666666554444444445677899999999999999999999 99999999
Q ss_pred HHHhhhhccCCC
Q 045562 511 ISAIENATGGDG 522 (525)
Q Consensus 511 ~~~i~~~~~~~g 522 (525)
.|++.|.+|=+|
T Consensus 403 ~g~i~d~~gW~g 414 (448)
T COG2271 403 LGYIADTWGWDG 414 (448)
T ss_pred ceeeEecCCCcc
Confidence 999987765444
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.89 E-value=1e-20 Score=200.49 Aligned_cols=146 Identities=18% Similarity=0.332 Sum_probs=125.4
Q ss_pred CChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhccCCCCccCCCCcCCCchhHHH
Q 045562 73 QSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVLGLGLLTLSAVLLSGSTSECQNTSCSANQFQVIF 152 (525)
Q Consensus 73 ~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (525)
.+..+.+++.+.+.++..++.++.|+++||+ |||+++..+.++..++.+++...... ...+.
T Consensus 68 ~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~-grr~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~ 129 (481)
T TIGR00879 68 YSSSLWGLVVSIFLVGGFIGALFAGWLSDRF-GRKKSLLIIALLFVIGAILMGLAAFA-----------------LSVEM 129 (481)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHhhHhhhhh-hhHHHHHHHHHHHHHHHHHHHHhccc-----------------cchHH
Confidence 4489999999999999999999999999999 99999999999998888888655321 22468
Q ss_pred HHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhhHHHHhhhhHHHhhhh---hhcccccchhhhHHHHH
Q 045562 153 FFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWYFGMCMGTFVTLTVL---NYIQDNLNWILGFGIPC 229 (525)
Q Consensus 153 ~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~---~~l~~~~g~~~~f~~~~ 229 (525)
+++.|+++|++.+...+...++++|.+|+++ |++++++++.+.++|..++|.++ ..+.+..+||+.|++.+
T Consensus 130 ~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~~~ 203 (481)
T TIGR00879 130 LIVGRVLLGIGVGIASALVPMYLSEIAPKAL------RGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQL 203 (481)
T ss_pred HHHHHHHHHhhhhHHHhHHHHHHHccCChhh------hhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHH
Confidence 8999999999999999999999999999998 99999999999999999999999 77777889999999966
Q ss_pred HHHHHHHHHHHhc
Q 045562 230 ILMVIALVVFLLG 242 (525)
Q Consensus 230 ~~~~~~~~~~~~~ 242 (525)
+..++.++..++.
T Consensus 204 ~~~~~~~~~~~~l 216 (481)
T TIGR00879 204 IPAGLLFLGLFFL 216 (481)
T ss_pred HHHHHHHHHHhcC
Confidence 6555554444443
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.7e-20 Score=193.00 Aligned_cols=171 Identities=12% Similarity=0.146 Sum_probs=143.5
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHH
Q 045562 39 WRSALFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYV 118 (525)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~ 118 (525)
+|..+.+....++..+..+...+.+|.+ .+++|.|+.+.+++.+.+.++..++.++.|+++||+ |||+.+..+.++..
T Consensus 7 ~~~l~~~~~~~~~~~~~~~~~~p~~~~i-~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~-grr~~~~~~~~~~~ 84 (394)
T PRK11652 7 VNLLFMLVLLVAVGQMAQTIYVPAIADM-ARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRV-GRRPVILVGMSIFI 84 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhc-CChHHHHHHHHHHH
Confidence 4455556666666666666666667655 468999999999999999999999999999999999 99999999998888
Q ss_pred HHHHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhhH
Q 045562 119 LGLGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWY 198 (525)
Q Consensus 119 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 198 (525)
++.+++....+ .+.+++.|++.|++.+...+....+..|.+++++ |+++.++.+
T Consensus 85 ~~~~~~~~~~~--------------------~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~ 138 (394)
T PRK11652 85 LGTLVALFAHS--------------------LTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQ------LRHANSLLN 138 (394)
T ss_pred HHHHHHHHHcc--------------------HHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHH------HHHHHHHHH
Confidence 88887776643 6788999999999998887888888899998877 899999999
Q ss_pred HHHhhhhHHHhhhhhhcccccchhhhHHHHHHHHHHHHH
Q 045562 199 FGMCMGTFVTLTVLNYIQDNLNWILGFGIPCILMVIALV 237 (525)
Q Consensus 199 ~~~~~g~~~gp~~~~~l~~~~g~~~~f~~~~~~~~~~~~ 237 (525)
.+..++..++|.+++++.+..||+.+|++.++..++..+
T Consensus 139 ~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~ 177 (394)
T PRK11652 139 MGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTF 177 (394)
T ss_pred HHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHH
Confidence 999999999999999999989999999987765554433
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.7e-20 Score=195.98 Aligned_cols=162 Identities=13% Similarity=0.150 Sum_probs=135.1
Q ss_pred HHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhccC
Q 045562 54 FAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVLGLGLLTLSAVLLSG 133 (525)
Q Consensus 54 ~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~~~~~l~~~~~~~~~~ 133 (525)
++...+.+.++. +++++|.+..+.++..+.+.++..++.++.|+++||+ |||+++..+.++..++..++.+..+
T Consensus 20 ~~~~~~~p~~~~-i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~~~~---- 93 (401)
T PRK11043 20 LATDMYLPAFKA-IQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRY-GRKPVLLAGLSLFALGSLGMLWVES---- 93 (401)
T ss_pred HHHHHHHhhHHH-HHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhc-CCcHHHHHHHHHHHHHHHHHHHhcC----
Confidence 333333444443 5678999999999999999999999999999999999 9999999999888888877776643
Q ss_pred CCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhhHHHHhhhhHHHhhhhh
Q 045562 134 STSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWYFGMCMGTFVTLTVLN 213 (525)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~ 213 (525)
.+.+++.|+++|++.+...+...+++.|.+|+++ +++.++..+....+|..++|.+++
T Consensus 94 ----------------~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~i~~ 151 (401)
T PRK11043 94 ----------------AAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQK------ANRVFATIMPLVALSPALAPLLGA 151 (401)
T ss_pred ----------------HHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHH------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6888899999999988887888899999999887 888888888888999999999999
Q ss_pred hcccccchhhhHHHHHHHHHHHHHHHHhcc
Q 045562 214 YIQDNLNWILGFGIPCILMVIALVVFLLGT 243 (525)
Q Consensus 214 ~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~ 243 (525)
++.+.+||+..|++.++..++..+..+..+
T Consensus 152 ~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 181 (401)
T PRK11043 152 WLLNHFGWQAIFATLFAITLLLILPTLRLK 181 (401)
T ss_pred HHHhcCChHHHHHHHHHHHHHHHHHHHHcC
Confidence 999999999999888766666554444433
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.3e-20 Score=201.28 Aligned_cols=158 Identities=14% Similarity=0.161 Sum_probs=125.9
Q ss_pred ccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhccCCCCccCCCCcCCCchh
Q 045562 70 PLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVLGLGLLTLSAVLLSGSTSECQNTSCSANQFQ 149 (525)
Q Consensus 70 ~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (525)
+++.+..+.+++.+.+.++..++++++|+++||+ |||+++.++.+++.++.++++++..... .....+...
T Consensus 49 ~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~-Grr~~~~~~~~l~~i~~~~~~~~~~~~~--------~~~~~~~~~ 119 (479)
T PRK10077 49 SESAANSLLGFCVASALIGCIIGGALGGYCSNRF-GRRDSLKIAAVLFFISALGSAWPEFGFT--------SIGPDNTGY 119 (479)
T ss_pred cccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHhhccccc--------cccccchhH
Confidence 3488999999999999999999999999999999 9999999999998888777765321000 000011123
Q ss_pred HHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhhHHHHhhhhHHHhhhhhhcc--------cccch
Q 045562 150 VIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWYFGMCMGTFVTLTVLNYIQ--------DNLNW 221 (525)
Q Consensus 150 ~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l~--------~~~g~ 221 (525)
...++++|+++|++.|+..|...++++|++|+++ |+++++....+..+|..+++.+++.+. +..||
T Consensus 120 ~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~------rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gW 193 (479)
T PRK10077 120 VPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHI------RGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGW 193 (479)
T ss_pred HHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhh------hhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCCh
Confidence 5678899999999999999999999999999998 999999999999999999887765432 45799
Q ss_pred hhhHHHHHHHHHHHHHHHHhc
Q 045562 222 ILGFGIPCILMVIALVVFLLG 242 (525)
Q Consensus 222 ~~~f~~~~~~~~~~~~~~~~~ 242 (525)
|++|++.++..++..+..++.
T Consensus 194 r~~f~~~~~~~~~~~~~~~~l 214 (479)
T PRK10077 194 RYMFASEAIPALLFLMLLYFV 214 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHcC
Confidence 999998877666655444443
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.3e-20 Score=201.08 Aligned_cols=349 Identities=12% Similarity=0.081 Sum_probs=217.4
Q ss_pred HhccccCCC---hHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhccCCCCccCCCC
Q 045562 66 YLTGPLAQS---TATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVLGLGLLTLSAVLLSGSTSECQNTS 142 (525)
Q Consensus 66 yl~~~lg~s---~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 142 (525)
.+.++++++ ..+.++..+.+.++..++.++.|+++||+ |||++++++.++..++.++.+++.+
T Consensus 114 ~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~-Grr~~~~~~~~~~~i~~~~~~~~~~------------- 179 (505)
T TIGR00898 114 TIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRF-GRKKVLLLSTLVTAVSGVLTAFSPN------------- 179 (505)
T ss_pred cEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhc-cchHHHHHHHHHHHHHHHHHHHccc-------------
Confidence 467789999 89999999999999999999999999998 9999999999998888888877654
Q ss_pred cCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhhHHHHhhhhHHHhhhhhhcccccchh
Q 045562 143 CSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWYFGMCMGTFVTLTVLNYIQDNLNWI 222 (525)
Q Consensus 143 ~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l~~~~g~~ 222 (525)
++.+++.|++.|++.++..+...+++.|.+|+++ |+++.++......+|.+++|.++..+.+ ||
T Consensus 180 -------~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~------r~~~~~~~~~~~~~g~~~~~~~~~~~~~---wr 243 (505)
T TIGR00898 180 -------YTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQ------RAIVGTLIQVFFSLGLVLLPLVAYFIPD---WR 243 (505)
T ss_pred -------HHHHHHHHHHHHhhccchHHHHHHHhheecChhh------hHHHHHHHHHHHHHHHHHHHHHHHHhhH---HH
Confidence 7889999999999999999999999999999998 9999999998999999999988876654 99
Q ss_pred hhHHHHHHHHHHHHHHHHhcccceeecCCCCCCchhhhHHHHHHHHHhccccCCchhhhHhhhhCCCCCCCccchhhhhH
Q 045562 223 LGFGIPCILMVIALVVFLLGTKIYRYSLKGEEKSPFLRIGQVFVTAVRNWRITPSAIALEEEARGTLPHQSSEQFKFLNK 302 (525)
Q Consensus 223 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (525)
+.|++.++..++..+..++.++..+....++ ...+..+......+........... . .+.
T Consensus 244 ~~~~~~~i~~~~~~~~~~~~~esp~~l~~~~---~~~~a~~~l~~~~~~~~~~~~~~~~-~----------------~~~ 303 (505)
T TIGR00898 244 WLQLAVSLPTFLFFLLSWFVPESPRWLISQG---RIEEALKILQRIAKINGKKLPAEVL-S----------------LSL 303 (505)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCChHHHHHCC---CHHHHHHHHHHHHHHcCCCCCHHHH-h----------------hhh
Confidence 9999888776665555544433211111111 1112222222211111110000000 0 000
Q ss_pred HHh-hcCCCCCCCcccchhhHHHHHHHHHH-HHHHHHHHHHHHHHhhccchhhhhhhccccCcccccccChhhhhhhhhH
Q 045562 303 ALL-ASNGSKGYGKVCSVGEVEEAKALLRL-VPIWTTCLVYAIVFAQSSTFFTKQGVTMDRSVVADFQIPAASLQSFISL 380 (525)
Q Consensus 303 ~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (525)
.+. .+...+..+++ ....+.+... +............++..... .+ . ...+.........+
T Consensus 304 ~~~~~~~~~~~~~~~-----l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~-~----~~~~~~~~~~~~~~ 366 (505)
T TIGR00898 304 EKDLSSSKKQYSFLD-----LFRTPNLRKTTLCLMMLWFTTAFSYYGLVLD-------LG-N----LGGNIYLDLFISGL 366 (505)
T ss_pred hhhhhhccCCCcHHH-----HhCChHHHHHHHHHHHHHHHHHHHHHHHhcc-------cc-c----cCCChHHHHHHHHH
Confidence 000 00000011111 1111111111 11111111111111111111 11 0 11111111222223
Q ss_pred HHHHHHHhhhhhhhhhhhhhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCcCCCCCCccchHHHHHH
Q 045562 381 AIVLTIPIYDRIFVPIARTFTRKPAGITMLQRIGTGMFLSAASMTGATLVEMKRLKTAEEYGLVDKPNVTIPMSVWWLIP 460 (525)
Q Consensus 381 ~~i~~~~l~~~~~~~l~~r~~~~~~~~~~~~~i~ig~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~ 460 (525)
..+....+. ..+.||++|| +.+.++.++.+++.+...... ....++...
T Consensus 367 ~~i~~~~~~----~~l~dr~grr-------~~~~~~~~~~~~~~l~~~~~~--------------------~~~~~~~~~ 415 (505)
T TIGR00898 367 VELPAKLIT----LLLIDRLGRR-------YTMAASLLLAGVALLLLLFVP--------------------VDLYFLRTA 415 (505)
T ss_pred HHHHHHHHH----HHHHHHhCCH-------HHHHHHHHHHHHHHHHHHHcC--------------------CCchHHHHH
Confidence 333333333 3367787665 667777777777776666532 112244445
Q ss_pred HHHHHHHHHHHHhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 045562 461 QYALLGVSEAFTMVGLQEFFYDQVPTELRSVGLSLYLSIFGVGSFLSSFLIS 512 (525)
Q Consensus 461 ~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~~~~~ 512 (525)
..++.+++.....+..+.+..|..|++.|++++|+.+....+|++++|.+.+
T Consensus 416 ~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~ 467 (505)
T TIGR00898 416 LAVLGKFGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY 467 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH
Confidence 5566677777778888999999999999999999999999999999999988
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.5e-21 Score=196.05 Aligned_cols=159 Identities=17% Similarity=0.129 Sum_probs=135.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHHHH
Q 045562 41 SALFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVLG 120 (525)
Q Consensus 41 ~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~~~ 120 (525)
+.+...+..+......+...+++|.|+++++|.|..+.+++.+.+.++..++.++.|+++||+ |||+.+..+.++..++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~i~ 80 (366)
T TIGR00886 2 NLFFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKF-GPRYTTTLSLLLLAIP 80 (366)
T ss_pred chHHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHH
Confidence 456666777777778888888888889999999999999999999999999999999999999 9999999999999999
Q ss_pred HHHHHHhh-hhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhhHH
Q 045562 121 LGLLTLSA-VLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWYF 199 (525)
Q Consensus 121 ~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 199 (525)
.+++.+.. + ++.+++.|+++|++.+. .+...++++|.+|+++ |+++.++...
T Consensus 81 ~~~~~~~~~~--------------------~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~------r~~~~~~~~~ 133 (366)
T TIGR00886 81 CLWAGLAVQS--------------------YSVLLLLRLFIGIAGGS-FASCMPWISFFFPKKI------QGTALGLAAG 133 (366)
T ss_pred HHHHHHHhhh--------------------HHHHHHHHHHHHHhchh-hHhHHHHHHHhcCHhh------hhHHHHHHHH
Confidence 88888765 3 68888999999999665 4567889999999988 9999999887
Q ss_pred HHhhhhHHHhhhhhhccc----------ccchhhhHHH
Q 045562 200 GMCMGTFVTLTVLNYIQD----------NLNWILGFGI 227 (525)
Q Consensus 200 ~~~~g~~~gp~~~~~l~~----------~~g~~~~f~~ 227 (525)
..++|..+++.+++.+.. ..+|++.|++
T Consensus 134 ~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~ 171 (366)
T TIGR00886 134 WGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVI 171 (366)
T ss_pred HhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHH
Confidence 778888777777765543 3489999943
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.88 E-value=4e-20 Score=197.91 Aligned_cols=363 Identities=17% Similarity=0.124 Sum_probs=248.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHHH
Q 045562 40 RSALFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVL 119 (525)
Q Consensus 40 ~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~~ 119 (525)
|+...+....++.+++..+...-++-++. ++.-|+..++++..+..+...+..+++|.++||+ .|||+++.+.++.++
T Consensus 10 ~~Fr~lw~a~~iS~lG~~~~~va~~wlv~-~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~-drrrili~~~~~~~~ 87 (524)
T PF05977_consen 10 RNFRRLWIAQLISNLGDWMQTVALAWLVT-QLTGSPLMVALVQAASTLPILLLSLFAGALADRF-DRRRILILSQLLRAL 87 (524)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cchHHHHHHHHHHHH
Confidence 34555666677777777666555555554 5677888999999999999999999999999999 999999999887766
Q ss_pred HHHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhhHH
Q 045562 120 GLGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWYF 199 (525)
Q Consensus 120 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 199 (525)
....+++...... .+.+.+++.-++.|++.+...|+.++++.|++|+++ ..++.++.+.
T Consensus 88 ~~~~L~~l~~~~~---------------~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~------L~~A~al~s~ 146 (524)
T PF05977_consen 88 VALLLAVLAFFGL---------------LSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKED------LPAANALNSI 146 (524)
T ss_pred HHHHHHHHHHhCc---------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhh------HHHHHHHHHH
Confidence 6555554432111 236788888899999999999999999999999998 9999999999
Q ss_pred HHhhhhHHHhhhhhhcccccchhhhHHHHHHHHHHHHHHHHhcccceeecCCCCCCchhhhHHHHHHHHHhccccCCchh
Q 045562 200 GMCMGTFVTLTVLNYIQDNLNWILGFGIPCILMVIALVVFLLGTKIYRYSLKGEEKSPFLRIGQVFVTAVRNWRITPSAI 279 (525)
Q Consensus 200 ~~~~g~~~gp~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (525)
..+++..+||.++|.+...+|-..+|.+.++..++.+..+...+++.++++..+ ++...+....+.
T Consensus 147 ~~niar~iGPalgG~Lva~~G~~~~f~inalsfl~~i~~l~~~~~~~~~~~~~~-e~~~~~l~~G~r------------- 212 (524)
T PF05977_consen 147 SFNIARIIGPALGGILVAFFGAAAAFLINALSFLISILALLRWKPPPPPSSLPR-ERFFSALREGLR------------- 212 (524)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccch-hhhhhhHHHHHH-------------
Confidence 999999999999999999899999999999887776655555443221111010 011111111100
Q ss_pred hhHhhhhCCCCCCCccchhhhhHHHhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhcc
Q 045562 280 ALEEEARGTLPHQSSEQFKFLNKALLASNGSKGYGKVCSVGEVEEAKALLRLVPIWTTCLVYAIVFAQSSTFFTKQGVTM 359 (525)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (525)
...+.+.+...+........+...+. ..++...
T Consensus 213 -----------------------------------------yv~~~~~l~~~l~~~~~~~l~~~a~~---aLlPl~a--- 245 (524)
T PF05977_consen 213 -----------------------------------------YVRSSPPLRSVLLRSFLFNLFASAVW---ALLPLFA--- 245 (524)
T ss_pred -----------------------------------------HHhcchHHHHHHHHHHHHHHhhhHHH---HhhhHHH---
Confidence 01111222111111111111111111 1122211
Q ss_pred ccCcccccccChhhhhhhhhHHHHHHHHhhhhhhhhhhhhhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 045562 360 DRSVVADFQIPAASLQSFISLAIVLTIPIYDRIFVPIARTFTRKPAGITMLQRIGTGMFLSAASMTGATLVEMKRLKTAE 439 (525)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~l~~r~~~~~~~~~~~~~i~ig~~l~~i~~~~~~~~~~~~~~~~~ 439 (525)
...+++ .....+.+.+..++..++...+..+ +.+| .+..+.+..+.++.+++.+.+++.
T Consensus 246 ~~~l~~-~a~~yGll~a~~gvGai~Gal~~~~----l~~~-------~~~~~lv~~~~~~~a~~~~~lal~--------- 304 (524)
T PF05977_consen 246 RDVLGG-GASGYGLLLAAFGVGAILGALLLPR----LRRR-------LSSRRLVLLASLLFALALLLLALS--------- 304 (524)
T ss_pred HHHhCC-cHHHHHHHHHHHHHHHHHHHHHHHH----hhcc-------cCcchhhHHHHHHHHHHHHHHhcc---------
Confidence 111111 1112234445555555554444332 3344 344467778888888888777763
Q ss_pred hcCCcCCCCCCccchHHHHHHHHHHHHHHHHHHhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 045562 440 EYGLVDKPNVTIPMSVWWLIPQYALLGVSEAFTMVGLQEFFYDQVPTELRSVGLSLYLSIFGVGSFLSSFLISAIENATG 519 (525)
Q Consensus 440 ~~g~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~~~~~~i~~~~~ 519 (525)
.+.+...+.+++.|++........++.+++..|+++||+.++++++....+..+|.++.|.+.+..|
T Consensus 305 -------------~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g 371 (524)
T PF05977_consen 305 -------------PSFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFG 371 (524)
T ss_pred -------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3667777888999999999999999999999999999999999999999999999999999999876
Q ss_pred C
Q 045562 520 G 520 (525)
Q Consensus 520 ~ 520 (525)
.
T Consensus 372 ~ 372 (524)
T PF05977_consen 372 V 372 (524)
T ss_pred H
Confidence 4
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.1e-19 Score=188.97 Aligned_cols=340 Identities=11% Similarity=0.002 Sum_probs=214.1
Q ss_pred HHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchH----HHHHHHHHHHHHHHHHH
Q 045562 49 EMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRY----RAIIIASLIYVLGLGLL 124 (525)
Q Consensus 49 ~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr----~~~~~~~~~~~~~~~l~ 124 (525)
.+....+...+.+++|.|++ ++|.|..++|++.+++.+...++.+++|.++||+ ||+ +.+.++..+. .....
T Consensus 13 ~~~~~~~~g~~~p~l~~~l~-~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~--~~~~~ 88 (382)
T PRK11128 13 YFGYFFAYGVFLPFWSVWLK-GQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDP-SQLIPALRLLALLTLLF--AVAFW 88 (382)
T ss_pred HHHHHHHHHHHhhhHHHHHH-hcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhh-cchHHHHHHHHHHHHHH--HHHHH
Confidence 44445666777899999996 6899999999999999999999999999999999 984 3332222111 11111
Q ss_pred HHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhhHHHHhhh
Q 045562 125 TLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWYFGMCMG 204 (525)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g 204 (525)
... ++.+.+++.|++.|++.+...|...++..+. .++ |+++++......++|
T Consensus 89 ~~~--------------------~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~------~~~a~~~~~~~~~lg 140 (382)
T PRK11128 89 FGA--------------------HSFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQ------IGLDYGKVRLWGSIA 140 (382)
T ss_pred Hhc--------------------ccHHHHHHHHHHHHHHHcccccHHHHHHHHH--Hhh------ccCCcchHHHHHHHH
Confidence 111 2267788899999999999999888887776 334 788888888889999
Q ss_pred hHHHhhhhhhcccccchhhhHHHHHHHHHHHHHHHHhcccceeecCCCCCCchhhhHHHHHHHHHhccccCCchhhhHhh
Q 045562 205 TFVTLTVLNYIQDNLNWILGFGIPCILMVIALVVFLLGTKIYRYSLKGEEKSPFLRIGQVFVTAVRNWRITPSAIALEEE 284 (525)
Q Consensus 205 ~~~gp~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (525)
..+||.+++++.+++||+..|++.++..++..+... ..++. ++++ ++..+ .
T Consensus 141 ~~igp~lgg~l~~~~g~~~~f~~~~~~~~~~~~~~~-~~~~~---~~~~--~~~~~-------------~---------- 191 (382)
T PRK11128 141 FVIGSALTGKLVSWFGEQAILWILTAGVASMLLGQL-LRPTI---MPQG--ESRQQ-------------E---------- 191 (382)
T ss_pred HHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHH-ccCCC---CCcc--ccccc-------------c----------
Confidence 999999999999999999999877755444333222 22211 1111 00000 0
Q ss_pred hhCCCCCCCccchhhhhHHHhhcCCCCCCCcccchhhHHHHHHHHHHHH-HHHHHHHHHHHHhhccchhhhhhhccccCc
Q 045562 285 ARGTLPHQSSEQFKFLNKALLASNGSKGYGKVCSVGEVEEAKALLRLVP-IWTTCLVYAIVFAQSSTFFTKQGVTMDRSV 363 (525)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (525)
++. ... +. +..+.+.++.... .++....+...+...+.++ . + .
T Consensus 192 --------~~~---------------~~~---~~--~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~-----~--~ 235 (382)
T PRK11128 192 --------SAG---------------WPA---WK--ALLKEPTVWRFLLCVSLLQGSHAAYYGFSAIYW-Q-----A--A 235 (382)
T ss_pred --------ccc---------------cch---HH--HHHcChhHHHHHHHHHHHHHHhHhHHHHHHHHH-H-----H--C
Confidence 000 000 00 1111222322222 1111111111221111111 1 1 1
Q ss_pred ccccccChhhhhhhhhHHHHHHHHhhhhhhhhhhhhhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCC
Q 045562 364 VADFQIPAASLQSFISLAIVLTIPIYDRIFVPIARTFTRKPAGITMLQRIGTGMFLSAASMTGATLVEMKRLKTAEEYGL 443 (525)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~l~~r~~~~~~~~~~~~~i~ig~~l~~i~~~~~~~~~~~~~~~~~~~g~ 443 (525)
+. .....+.+.....+..++...+.+ ++.||+ +.++.+..+.++.+++++.....
T Consensus 236 g~-s~~~~g~~~~~~~~~~~~~~~~~g----~l~~r~-------~~~~~l~~~~~~~~~~~~~~~~~------------- 290 (382)
T PRK11128 236 GY-SASTIGYLWSLGVVAEVLIFAFSN----RLFRRW-------SARDLLLLSAICGVVRWGLMGST------------- 290 (382)
T ss_pred CC-CHhHHHHHHHHHHHHHHHHHHHHH----HHHHHC-------CHHHHHHHHHHHHHHHHHHHHhh-------------
Confidence 11 111123333334443333344433 366664 34467778888888877666543
Q ss_pred cCCCCCCccchHHHHHHHHHHHHHHHHHHhhhhHHHhhhccCchhHHHHHHHHH-HHHHHHHHHHHHHHHHhhhhccC
Q 045562 444 VDKPNVTIPMSVWWLIPQYALLGVSEAFTMVGLQEFFYDQVPTELRSVGLSLYL-SIFGVGSFLSSFLISAIENATGG 520 (525)
Q Consensus 444 ~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~-~~~~lg~~lg~~~~~~i~~~~~~ 520 (525)
.+++.+++..++.++++++..+....+..+. |++.+++.+++++ +...+|..+|+.+.|.+.+.+|.
T Consensus 291 ---------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~ 358 (382)
T PRK11128 291 ---------TALPWLIVIQILHCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGA 358 (382)
T ss_pred ---------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH
Confidence 3566677788899999999999999998887 5666799999887 66778889999999999988753
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.7e-20 Score=190.04 Aligned_cols=172 Identities=16% Similarity=0.164 Sum_probs=144.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHHHHH
Q 045562 42 ALFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVLGL 121 (525)
Q Consensus 42 ~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~~~~ 121 (525)
+.+.+...+....+.....+.+|.+ .+++|.|..+.++..+.+.++..++.++.|+++||+ |||+.+..+.++..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~lp~~-~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~-g~r~~l~~~~~~~~i~~ 82 (392)
T PRK10473 5 LLCSFALVLLYPAGIDMYLVGLPRI-AADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRS-GRKPVAIPGAALFIIAS 82 (392)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHh-CChHHHHHHHHHHHHHH
Confidence 4455556666666666666667665 467999999999999999999999999999999999 99999999999888888
Q ss_pred HHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhhHHHH
Q 045562 122 GLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWYFGM 201 (525)
Q Consensus 122 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 201 (525)
.++....+ .+.+++.|+++|++.+...+...+++.|.+|+++ |+++.++.+...
T Consensus 83 ~~~~~~~~--------------------~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~ 136 (392)
T PRK10473 83 LLCSLAET--------------------SSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRR------RAKVLSLLNGIT 136 (392)
T ss_pred HHHHHhCc--------------------HHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHH
Confidence 88776643 6778889999999999988899999999999988 999999999999
Q ss_pred hhhhHHHhhhhhhcccccchhhhHHHHHHHHHHHHHHHHh
Q 045562 202 CMGTFVTLTVLNYIQDNLNWILGFGIPCILMVIALVVFLL 241 (525)
Q Consensus 202 ~~g~~~gp~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~ 241 (525)
++|..++|.+++++.+..||+..|++.++..++..+..+.
T Consensus 137 ~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~ 176 (392)
T PRK10473 137 CIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLLSLF 176 (392)
T ss_pred HHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999888899999998887666555444433
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.7e-20 Score=198.61 Aligned_cols=183 Identities=15% Similarity=0.115 Sum_probs=136.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhcc----ccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHH
Q 045562 40 RSALFIIGVEMAERFAYYGVSSNLITYLTG----PLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASL 115 (525)
Q Consensus 40 ~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~----~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~ 115 (525)
+.+.++.+..+...+....+....+..-.+ +.+.+..+.+++.+.+.++..++.++.|+++||+ |||+++.++.+
T Consensus 16 ~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~-Grr~~~~~~~~ 94 (502)
T TIGR00887 16 RAIVIAGVGFFTDSYDLFCISLVTKMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKL-GRKRVYGMELI 94 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccHHHHHHHHH
Confidence 334444455555555554444444432221 2345566778999999999999999999999999 99999999999
Q ss_pred HHHHHHHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehh
Q 045562 116 IYVLGLGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFN 195 (525)
Q Consensus 116 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 195 (525)
+..++.+++.++.+.. ...+...++++|+++|++.|+..+..+.+++|.+|+++ |+++.+
T Consensus 95 ~~~v~~~~~~~~~~~~--------------~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~------Rg~~~~ 154 (502)
T TIGR00887 95 IMIIATVASGLSPGSS--------------PKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKW------RGAMMA 154 (502)
T ss_pred HHHHHHHHHHHccCcc--------------cchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhh------HHHHHH
Confidence 9999888877653200 00125789999999999999999999999999999999 999999
Q ss_pred hhHHHHhhhhHHHhhhhhhccc-----------------------ccchhhhHHHHHHHHHHHHHHHHhcc
Q 045562 196 WWYFGMCMGTFVTLTVLNYIQD-----------------------NLNWILGFGIPCILMVIALVVFLLGT 243 (525)
Q Consensus 196 ~~~~~~~~g~~~gp~~~~~l~~-----------------------~~g~~~~f~~~~~~~~~~~~~~~~~~ 243 (525)
+.+....+|..+++.++.++.. ..+||..|.+.++..++..+..+..+
T Consensus 155 ~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~lp 225 (502)
T TIGR00887 155 AVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIP 225 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999999999999888765421 24799999887766655544444433
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.7e-20 Score=197.98 Aligned_cols=174 Identities=13% Similarity=0.057 Sum_probs=132.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHHH
Q 045562 40 RSALFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVL 119 (525)
Q Consensus 40 ~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~~ 119 (525)
+.+.......+......+...+.+| ++.+++|++..+.+++.+.+.++..++.+++|+++||+ |||+++..+.++..+
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-G~r~~~~~~~~~~~~ 113 (476)
T PLN00028 36 RAFHLSWISFFTCFVSTFAAAPLLP-IIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLY-GPRYGSAFLLMLTAP 113 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHHHH
Confidence 3444444444555555555555554 56779999999999998889999999999999999999 999999999888888
Q ss_pred HHHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhhHH
Q 045562 120 GLGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWYF 199 (525)
Q Consensus 120 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 199 (525)
+.++++++.+ ...+++.|+++|++.+... ....+++|++|+++ |+++.++.+.
T Consensus 114 ~~~~~~~~~s--------------------~~~l~~~r~l~G~~~~~~~-~~~~~i~~~~~~~~------rg~a~g~~~~ 166 (476)
T PLN00028 114 AVFCMSLVSS--------------------ATGFIAVRFFIGFSLATFV-SCQYWMSTMFNGKI------VGTANGIAAG 166 (476)
T ss_pred HHHHHHHhcC--------------------HHHHHHHHHHHHHHHHhhH-HHHHHHHHhcChhh------eeHHHHHHHH
Confidence 8877777644 6778889999999988654 45567899999988 9999999887
Q ss_pred HHhhhhHHHhhhhhhcc----c-----ccchhhhHHHHHHHHHHHHHHHHhc
Q 045562 200 GMCMGTFVTLTVLNYIQ----D-----NLNWILGFGIPCILMVIALVVFLLG 242 (525)
Q Consensus 200 ~~~~g~~~gp~~~~~l~----~-----~~g~~~~f~~~~~~~~~~~~~~~~~ 242 (525)
..++|..+++.+.+.+. + ..|||++|++.+++.++..+..+..
T Consensus 167 ~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~~ 218 (476)
T PLN00028 167 WGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLTL 218 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777766655432 2 2589999998887666554444443
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.2e-19 Score=188.59 Aligned_cols=165 Identities=13% Similarity=0.153 Sum_probs=138.9
Q ss_pred HHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhc
Q 045562 52 ERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVLGLGLLTLSAVLL 131 (525)
Q Consensus 52 ~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~~~~~l~~~~~~~~ 131 (525)
..+....+.+-+|. +.+++|.+..+.++..+.+.++..+++++.|+++||+ |||+++..+.++..++.+++..+++
T Consensus 28 ~~~~~~~~~p~l~~-i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~-Grr~~l~~~~~~~~~~~~~~~~a~~-- 103 (413)
T PRK15403 28 AYLTTDLIQPGIIN-VVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRI-GRRPVLITGALIFTLACAATLFTTS-- 103 (413)
T ss_pred HHHHHHhhccCHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHc-CchHHHHHHHHHHHHHHHHHHHcCC--
Confidence 33344444444554 5678999999999999999999999999999999999 9999999999999998888887754
Q ss_pred cCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhhHHHHhhhhHHHhhh
Q 045562 132 SGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWYFGMCMGTFVTLTV 211 (525)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~ 211 (525)
.+.++++|+++|++.+...+...+++.|.+|+++ |++++++++...++|..+||.+
T Consensus 104 ------------------~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~l 159 (413)
T PRK15403 104 ------------------MTQFLIARFIQGTSICFIATVGYVTVQEAFGQTK------GIKLMAIITSIVLVAPIIGPLS 159 (413)
T ss_pred ------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHHH
Confidence 7889999999999988766677788899999888 8999999999999999999999
Q ss_pred hhhcccccchhhhHHHHHHHHHHHHHHHHhccc
Q 045562 212 LNYIQDNLNWILGFGIPCILMVIALVVFLLGTK 244 (525)
Q Consensus 212 ~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~ 244 (525)
++++.+++||++.|++.++..+++.+..+...+
T Consensus 160 g~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~lp 192 (413)
T PRK15403 160 GAALMHFVHWKVLFAIIAVMGLIAFVGLLLAMP 192 (413)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999998899999999988776666554444333
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.4e-20 Score=190.21 Aligned_cols=161 Identities=16% Similarity=0.213 Sum_probs=140.2
Q ss_pred HHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhccC
Q 045562 54 FAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVLGLGLLTLSAVLLSG 133 (525)
Q Consensus 54 ~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~~~~~l~~~~~~~~~~ 133 (525)
++.....+.+|.+.+ ++|.|..+.+++.+.+.++..++.++.|+++||+ |||+++..+.++..++..++....+
T Consensus 5 ~~~~~~~p~~~~~~~-~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~i~~~~~~~~~~---- 78 (377)
T PRK11102 5 LAIDMYLPALPVIAA-DFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSF-GRKPVILGGTLVFALAAVACALAQT---- 78 (377)
T ss_pred hHHHHHhccHHHHHH-HhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhc-CChHHHHHHHHHHHHHHHHHHHHcc----
Confidence 344556678887775 7899999999999999999999999999999999 9999999999999988888887644
Q ss_pred CCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhhHHHHhhhhHHHhhhhh
Q 045562 134 STSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWYFGMCMGTFVTLTVLN 213 (525)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~ 213 (525)
.+.+++.|++.|++.+...+...+++.|.+|+++ |++++++.+....+|..++|.+++
T Consensus 79 ----------------~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~ 136 (377)
T PRK11102 79 ----------------IDQLIYMRFLHGLAAAAASVVINALMRDMFPKEE------FSRMMSFVTLVMTIAPLLAPIIGG 136 (377)
T ss_pred ----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788899999999999999999999999999988 999999999999999999999999
Q ss_pred hcccccchhhhHHHHHHHHHHHHHHHHhc
Q 045562 214 YIQDNLNWILGFGIPCILMVIALVVFLLG 242 (525)
Q Consensus 214 ~l~~~~g~~~~f~~~~~~~~~~~~~~~~~ 242 (525)
++.+..||+..|++.++..++..+.....
T Consensus 137 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (377)
T PRK11102 137 WLLVWFSWHAIFWVLALAAILAAALVFFF 165 (377)
T ss_pred HHHHHcChHHHHHHHHHHHHHHHHHHHHh
Confidence 99998999999988776666554444333
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.5e-20 Score=194.12 Aligned_cols=359 Identities=14% Similarity=0.147 Sum_probs=227.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhc---cch-HHHHHHHHHHHHHHHHH
Q 045562 48 VEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSF---LGR-YRAIIIASLIYVLGLGL 123 (525)
Q Consensus 48 ~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~---~Gr-r~~~~~~~~~~~~~~~l 123 (525)
..+..+.....+.++++.|+++++|.++.++|.+.++..+...+..|+.|+++||. +|| |+.+..+....+++.++
T Consensus 7 g~~~~~~~~~~~~~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~ 86 (437)
T TIGR00792 7 GDFGNNFIFAIVSTYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVL 86 (437)
T ss_pred chHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHH
Confidence 34556666777778999999999999999999999999999999999999999983 277 45677777777777776
Q ss_pred HHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhcccc-CCCcccccccceehhhhHHHHh
Q 045562 124 LTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFD-SQHPLESKLKSSFFNWWYFGMC 202 (525)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~-~~~~~~~~~r~~~~~~~~~~~~ 202 (525)
+....+.. .......+++.+++.+++.+...++..++..|..+ +++ |++..++.+...+
T Consensus 87 ~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~------R~~~~~~~~~~~~ 146 (437)
T TIGR00792 87 LFTTPDFS--------------ATGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRE------RESLSTFRRFGAT 146 (437)
T ss_pred HHhCCCCC--------------cchHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHH------HHHHHHHHHHHHH
Confidence 66543210 01224566677778888888888888899999885 455 8999999888888
Q ss_pred hhhHHHhhhhhhcc-------cccchhhhHHHHHHHHHHHHHHHHhcccceeecCCCCCCchhhhHHHHHHHHHhccccC
Q 045562 203 MGTFVTLTVLNYIQ-------DNLNWILGFGIPCILMVIALVVFLLGTKIYRYSLKGEEKSPFLRIGQVFVTAVRNWRIT 275 (525)
Q Consensus 203 ~g~~~gp~~~~~l~-------~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (525)
+|..+++.+.+.+. +..||+..+.+.+++.++..+..+...++.+++.++++ ++
T Consensus 147 ~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~e~~~~~~~~~-~~------------------ 207 (437)
T TIGR00792 147 LGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVSLIICFFGTKERYSEIPKNI-EK------------------ 207 (437)
T ss_pred HHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHHHHHcCCEecCCCCCccc-cc------------------
Confidence 88777766655443 34689999888877666655554444443221101100 00
Q ss_pred CchhhhHhhhhCCCCCCCccchhhhhHHHhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhh
Q 045562 276 PSAIALEEEARGTLPHQSSEQFKFLNKALLASNGSKGYGKVCSVGEVEEAKALLRLVPIWTTCLVYAIVFAQSSTFFTKQ 355 (525)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (525)
+.+..+ ..+ ...+.|.++..+...+.....+........++..
T Consensus 208 --------------------~~~~~~---------------~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 250 (437)
T TIGR00792 208 --------------------KLSLKQ---------------IFK-ALFKNDQLLILCLAYLFYNLAFNIKNGVQVYYFT- 250 (437)
T ss_pred --------------------CCCHHH---------------HHH-HHhCCHHHHHHHHHHHHHHHHHHHHcchhheeEe-
Confidence 000000 000 0111222222222111111111111111111111
Q ss_pred hhccccCcccccccChhhhhhhhhHHHHHHHHhhhhhhhhhhhhhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045562 356 GVTMDRSVVADFQIPAASLQSFISLAIVLTIPIYDRIFVPIARTFTRKPAGITMLQRIGTGMFLSAASMTGATLVEMKRL 435 (525)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~l~~r~~~~~~~~~~~~~i~ig~~l~~i~~~~~~~~~~~~~ 435 (525)
...+ .....+.+.....+..++..++.++ +.||+++| +.+..+.++.+++.+...+.
T Consensus 251 -----~~~~--~~~~~~~~~~~~~i~~ii~~~~~~~----l~~r~g~~-------~~~~~~~~~~~~~~~~~~~~----- 307 (437)
T TIGR00792 251 -----YVLG--DPELFSYMGSIAIVAGLIGVLLFPR----LVKKFGRK-------ILFAGGILLMVLGYLIFFFA----- 307 (437)
T ss_pred -----eecC--ChHHHHHHHHHHHHHHHHHHHHHHH----HHHHhCcH-------HHHHHHHHHHHHHHHHHHHc-----
Confidence 1011 1111122333334555555555544 67776544 66777887777777666543
Q ss_pred hhhhhcCCcCCCCCCccchHHHHHHHHHHHHHHHHHHhhhhHHHhhhccC-------chhHHHHHHHHHHHHHHHHHHHH
Q 045562 436 KTAEEYGLVDKPNVTIPMSVWWLIPQYALLGVSEAFTMVGLQEFFYDQVP-------TELRSVGLSLYLSIFGVGSFLSS 508 (525)
Q Consensus 436 ~~~~~~g~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P-------~~~rg~~~gi~~~~~~lg~~lg~ 508 (525)
+.+.+.+.+..++.+++.+...+..++++.+.+| ++.+|.+.|++++...+|..+++
T Consensus 308 ----------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~ 371 (437)
T TIGR00792 308 ----------------GSNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAG 371 (437)
T ss_pred ----------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHH
Confidence 1244555666778889999889999999988876 56789999999999999999999
Q ss_pred HHHHHhhhhccCC
Q 045562 509 FLISAIENATGGD 521 (525)
Q Consensus 509 ~~~~~i~~~~~~~ 521 (525)
.+.|.+.+..|-.
T Consensus 372 ~i~g~ll~~~G~~ 384 (437)
T TIGR00792 372 FLVGLILGIIGYV 384 (437)
T ss_pred HHHHHHHHHcCCC
Confidence 9999999887654
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.4e-19 Score=187.11 Aligned_cols=320 Identities=14% Similarity=0.147 Sum_probs=191.2
Q ss_pred HHhhhhhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCc
Q 045562 89 ASLLPLFGAFLADSFLGRYRAIIIASLIYVLGLGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHK 168 (525)
Q Consensus 89 ~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~ 168 (525)
..++.++.|+++||+ |||+++..+.++..++..++.+..+..... .+....+++.|+++|++.+...
T Consensus 48 ~~i~~~~~G~l~dr~-g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~r~l~G~~~~~~~ 114 (394)
T TIGR00883 48 RPLGAIVFGHFGDRI-GRKKTLVITLLMMGIGTLLIGLLPSYATIG------------IWAPILLLLARLIQGFSLGGEW 114 (394)
T ss_pred hhhHHHHhhhhhhhh-hhHHHHHHHHHHHHHHHHHHhhCCChhhhH------------HHHHHHHHHHHHHHHhhccccc
Confidence 346789999999999 999999999999999988888764311000 0112358889999999999999
Q ss_pred cchhhhhhccccCCCcccccccceehhhhHHHHhhhhHHHhhhhhhcc--------cccchhhhHHHHHHHHHHHHHHHH
Q 045562 169 PCVQAFGADQFDSQHPLESKLKSSFFNWWYFGMCMGTFVTLTVLNYIQ--------DNLNWILGFGIPCILMVIALVVFL 240 (525)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l~--------~~~g~~~~f~~~~~~~~~~~~~~~ 240 (525)
+..++++.|.+|+++ |++..++.+.+..+|..+++.++..+. +..+|+.+|++.++..++++....
T Consensus 115 ~~~~~~~~~~~~~~~------r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 188 (394)
T TIGR00883 115 GGAALYLAEYAPPGK------RGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIGLYLRR 188 (394)
T ss_pred cccHHHhhhcCCccc------chHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHHHHHHHHHHHHHHHHHHH
Confidence 999999999999988 999999999999999999998876543 357899999887766555443322
Q ss_pred hcccceeecCCCCCCchhhhHHHHHHHHHhccccCCchhhhHhhhhCCCCCCCccchhhhhHHHhhcCCCCCCCcccchh
Q 045562 241 LGTKIYRYSLKGEEKSPFLRIGQVFVTAVRNWRITPSAIALEEEARGTLPHQSSEQFKFLNKALLASNGSKGYGKVCSVG 320 (525)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (525)
..+++ ++.++++ +.. +. .+.++++.
T Consensus 189 ~~~~~-~~~~~~~-----------------~~~-------------------~~---------------~~~~~~~~--- 213 (394)
T TIGR00883 189 NLEET-PVFEKAQ-----------------EKH-------------------KK---------------KRGPIRET--- 213 (394)
T ss_pred hcCCC-hhHHHHH-----------------hcc-------------------cc---------------ccCCHHHH---
Confidence 22211 0000000 000 00 00000000
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhccccCcccccccChhhhhhhhhHHHHHHHHhhhhhhhhhhhhh
Q 045562 321 EVEEAKALLRLVPIWTTCLVYAIVFAQSSTFFTKQGVTMDRSVVADFQIPAASLQSFISLAIVLTIPIYDRIFVPIARTF 400 (525)
Q Consensus 321 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~l~~r~ 400 (525)
..+.++.++........ ....+.......+.+.. ...+. .....+.......+..++..++.++ +.||+
T Consensus 214 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~---~~~g~-~~~~~~~~~~~~~~~~~~~~~~~g~----l~dr~ 282 (394)
T TIGR00883 214 LTKHRKPFLLGLGLVIA---TTTTFYLITTYLPTYLT---QTLGL-SANSALLVLMLSLILFFITIPLSGA----LSDRI 282 (394)
T ss_pred HHhchHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH---HhcCC-ChhHHHHHHHHHHHHHHHHHHHHHH----HHHHh
Confidence 01111122222211111 11111111112221110 00010 1111222333444455555555554 67776
Q ss_pred ccCCCCCCchHHHHHHHHHH-HHHHHHHHHHHHHHHhhhhhcCCcCCCCCCccchHHHHHHHHHHHHHHHHHHhhhhHHH
Q 045562 401 TRKPAGITMLQRIGTGMFLS-AASMTGATLVEMKRLKTAEEYGLVDKPNVTIPMSVWWLIPQYALLGVSEAFTMVGLQEF 479 (525)
Q Consensus 401 ~~~~~~~~~~~~i~ig~~l~-~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~ 479 (525)
++| +.+..+..+. ..+......... ..+.+......++.+++.+...+..+++
T Consensus 283 g~~-------~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 336 (394)
T TIGR00883 283 GRR-------PVLIIFTVLAALLAVPLLMALLD-------------------SGSFTLFFFLVLGLALIGGMYTGPMGSF 336 (394)
T ss_pred chH-------HHHHHHHHHHHHHHHHHHHHHhc-------------------CCchHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 554 3333333222 222222221110 1245555566777888888888999999
Q ss_pred hhhccCchhHHHHHHH-HHHHHHHHHHHHHHHHHHhhhhcc
Q 045562 480 FYDQVPTELRSVGLSL-YLSIFGVGSFLSSFLISAIENATG 519 (525)
Q Consensus 480 ~~~~~P~~~rg~~~gi-~~~~~~lg~~lg~~~~~~i~~~~~ 519 (525)
+.+..|++.|+++.|+ +++...+|..++|.+.|++.+..|
T Consensus 337 ~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g 377 (394)
T TIGR00883 337 LPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTG 377 (394)
T ss_pred HHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcC
Confidence 9999999999999998 456677899999999999998876
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.3e-19 Score=186.26 Aligned_cols=329 Identities=13% Similarity=0.109 Sum_probs=212.2
Q ss_pred HHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhccCCCCccC
Q 045562 60 SSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVLGLGLLTLSAVLLSGSTSECQ 139 (525)
Q Consensus 60 ~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 139 (525)
.+.+| .+.+++|.|..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++..++.+.+ ...+
T Consensus 20 ~~~lp-~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~-~~~~---------- 86 (355)
T TIGR00896 20 GPLLP-QIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRF-GEERSVAAGLLLIAAGILIR-SAPG---------- 86 (355)
T ss_pred cccHH-HHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-CchHHHHHHHHHHHHHHHHH-Hhcc----------
Confidence 34555 46679999999999999999999999999999999999 99999999988777776655 3322
Q ss_pred CCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhhHHHHhhhhHHHhhhhhhccccc
Q 045562 140 NTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWYFGMCMGTFVTLTVLNYIQDNL 219 (525)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l~~~~ 219 (525)
.+.+++.|++.|++.+...+..+.++.|.+| ++ |+++.++++...++|..+++.+++++.++.
T Consensus 87 ----------~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~------~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~ 149 (355)
T TIGR00896 87 ----------TALLFAGTALIGVGIAIINVLLPSLIKRDFP-QR------VGLMTGLYSMALMGGAALAAAATVPLAQHS 149 (355)
T ss_pred ----------HHHHHHHHHHHHHHHHHHhccchHHHHHhCc-ch------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5777899999999999888888888888886 46 899999999999999999999999887765
Q ss_pred c--hhhhHHHHHHHHHHHHHHHHhcccceeecCCCCCCchhhhHHHHHHHHHhccccCCchhhhHhhhhCCCCCCCccch
Q 045562 220 N--WILGFGIPCILMVIALVVFLLGTKIYRYSLKGEEKSPFLRIGQVFVTAVRNWRITPSAIALEEEARGTLPHQSSEQF 297 (525)
Q Consensus 220 g--~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (525)
+ |+..|.+.++..++...... ++ .+++++++ ++.
T Consensus 150 ~~~w~~~f~~~~~~~~~~~~~~~--~~-~~~~~~~~--~~~--------------------------------------- 185 (355)
T TIGR00896 150 GGHWQQALAWWALPALLALLAWI--PQ-VRRRVAAN--QTT--------------------------------------- 185 (355)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHh--hh-hccccCCC--CCC---------------------------------------
Confidence 3 99988776654433322221 11 11111110 000
Q ss_pred hhhhHHHhhcCCCCCCCcccchhhHHHHHHHHHHH-HHHHHHHHHHHHHhhccchhhhhhhccccCcccccccChhhhhh
Q 045562 298 KFLNKALLASNGSKGYGKVCSVGEVEEAKALLRLV-PIWTTCLVYAIVFAQSSTFFTKQGVTMDRSVVADFQIPAASLQS 376 (525)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (525)
.+.++++. .++ +.++... ...+....++......+.++.+ . +. .....+.+..
T Consensus 186 ------------~~~~~~~~----~~~-~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~--~------g~-~~~~~g~~~~ 239 (355)
T TIGR00896 186 ------------TRLTPVRI----WRS-PLAWQVTVFFGLQSGLYYSLIGWLPAILIS--H------GA-SAATAGSLLA 239 (355)
T ss_pred ------------CCCCCchh----hcC-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--c------CC-CHHHHHHHHH
Confidence 00000000 111 1222111 1111122222222222222211 1 11 1112233445
Q ss_pred hhhHHHHHHHHhhhhhhhhhhhhhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCcCCCCCCccchHH
Q 045562 377 FISLAIVLTIPIYDRIFVPIARTFTRKPAGITMLQRIGTGMFLSAASMTGATLVEMKRLKTAEEYGLVDKPNVTIPMSVW 456 (525)
Q Consensus 377 ~~~~~~i~~~~l~~~~~~~l~~r~~~~~~~~~~~~~i~ig~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 456 (525)
...+..++..++.++ +.||+++| ++.+.++.++.+++.+...+.. .+..
T Consensus 240 ~~~~~~i~~~~~~g~----l~dr~~~~------~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~ 288 (355)
T TIGR00896 240 LMQLAQAASALLIPA----LARRVKDQ------RGIVAVLAVLQLVGLCGLLFAP---------------------MHGL 288 (355)
T ss_pred HHHHHHHHHHHhHHH----HHhhhccc------hHHHHHHHHHHHHHHHHHHHhh---------------------hhHH
Confidence 555555555665555 66776332 1445667777777766665532 1111
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHhhhcc-CchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCC
Q 045562 457 WLIPQYALLGVSEAFTMVGLQEFFYDQV-PTELRSVGLSLYLSIFGVGSFLSSFLISAIENATGGD 521 (525)
Q Consensus 457 ~l~~~~~l~g~g~~~~~~~~~~~~~~~~-P~~~rg~~~gi~~~~~~lg~~lg~~~~~~i~~~~~~~ 521 (525)
++ ..++.|++.+...+...+.+.+.. +++.++..+++.+....++..++|.+.|++.+.+|+-
T Consensus 289 ~~--~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g~~ 352 (355)
T TIGR00896 289 WA--WALVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISGNW 352 (355)
T ss_pred HH--HHHHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 11 346778999888888777776555 4677899999999999999999999999999998753
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.4e-19 Score=189.58 Aligned_cols=149 Identities=15% Similarity=0.120 Sum_probs=120.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHHHHH
Q 045562 42 ALFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVLGL 121 (525)
Q Consensus 42 ~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~~~~ 121 (525)
+..+..+.+...+........+|. +++++|.|..+.++..+.+.++..++.++.|+++||+ |||+++..+..+++++.
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~p~-i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~-G~r~~l~~g~~~~~~~~ 105 (438)
T PRK10133 28 FALLCSLFFLWAVANNLNDILLPQ-FQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGLFLYALGA 105 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHH
Confidence 344444555555555555555655 5889999999999999999999999999999999999 99999999999999998
Q ss_pred HHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhhHHHH
Q 045562 122 GLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWYFGM 201 (525)
Q Consensus 122 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 201 (525)
+++...... .+++.++++|+++|+|.|...+..++++.|..|+++ |...++..+...
T Consensus 106 ~l~~~~~~a-----------------~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~------~~~~~s~~~~~~ 162 (438)
T PRK10133 106 ALFWPAAEI-----------------MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS------GHFRLNLAQTFN 162 (438)
T ss_pred HHHHHHHhc-----------------CCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhh------HHHHHHHHHHHH
Confidence 776422110 227889999999999999999999999998766665 666788888888
Q ss_pred hhhhHHHhhhhhhc
Q 045562 202 CMGTFVTLTVLNYI 215 (525)
Q Consensus 202 ~~g~~~gp~~~~~l 215 (525)
.+|..+||.+++.+
T Consensus 163 ~~G~~~g~~~g~~l 176 (438)
T PRK10133 163 SFGAIIAVVFGQSL 176 (438)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999887654
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2e-19 Score=188.42 Aligned_cols=357 Identities=14% Similarity=0.035 Sum_probs=224.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHHH
Q 045562 41 SALFIIGVEMAERFAYYGVSSNLITYLTG-PLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVL 119 (525)
Q Consensus 41 ~~~~~~~~~~~~~~~~y~~~~~l~~yl~~-~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~~ 119 (525)
+.+.+....+...+......+.+...+.+ ++|+|..+.+++.+.+.+...+++++.|++.||+ |.|+++.++.++..+
T Consensus 34 r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~-G~R~v~~~~~ll~~i 112 (462)
T PRK15034 34 RNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIF-GGRRWTVFSTAILII 112 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHHHH
Confidence 34445555566666666666666666654 7999999999999999999999999999999999 999999999998888
Q ss_pred HHHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhhHH
Q 045562 120 GLGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWYF 199 (525)
Q Consensus 120 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 199 (525)
...+++++..... .+++.+++.|++.|++ +...+.....+++++|+++ |++++++...
T Consensus 113 ~~~~~~~a~~~~~---------------~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~------rG~A~Gi~~g 170 (462)
T PRK15034 113 PCVWLGIAVQNPN---------------TPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAK------QGSALGINGG 170 (462)
T ss_pred HHHHHHHHHcccC---------------CCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhH------hHHHHHHHHH
Confidence 8888776511000 1278999999999998 6688889999999999998 9999999866
Q ss_pred HHhhhhHHHhhhhhh-----ccc-------------ccchhhhHHHHHHHHHHHHHHHHhcccceeecCCCCCCchhhhH
Q 045562 200 GMCMGTFVTLTVLNY-----IQD-------------NLNWILGFGIPCILMVIALVVFLLGTKIYRYSLKGEEKSPFLRI 261 (525)
Q Consensus 200 ~~~~g~~~gp~~~~~-----l~~-------------~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (525)
..++|..+++.+... +.. ..+|+.++++..++.++..+..++..++.++ ++ ....+.
T Consensus 171 ~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~---~~--~~~~~~ 245 (462)
T PRK15034 171 LGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDIAS---SR--ASIADQ 245 (462)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCccc---cc--cCHHHH
Confidence 666666555444432 212 3347777767666655555444444332111 11 111111
Q ss_pred HHHHHHHHhccccCCchhhhHhhhhCCCCCCCccchhhhhHHHhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHHHHH
Q 045562 262 GQVFVTAVRNWRITPSAIALEEEARGTLPHQSSEQFKFLNKALLASNGSKGYGKVCSVGEVEEAKALLRLVPIWTTCLVY 341 (525)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 341 (525)
.+ . .+ .++.+....+.++....
T Consensus 246 ~~----v-----------------------------------------------------lk-~~~~Wllslly~~tFG~ 267 (462)
T PRK15034 246 LP----V-----------------------------------------------------LQ-RLHLWLLSLLYLATFGS 267 (462)
T ss_pred HH----H-----------------------------------------------------hC-CCchhHHHHHHHHHHHH
Confidence 00 0 11 11222333333333333
Q ss_pred HHHHh-hccchhhhhhhccccCcccccccChhhhhhhhhHHHHHHHHhhhhhhhhhhhhhccCCCCCCchHHHHHHHHHH
Q 045562 342 AIVFA-QSSTFFTKQGVTMDRSVVADFQIPAASLQSFISLAIVLTIPIYDRIFVPIARTFTRKPAGITMLQRIGTGMFLS 420 (525)
Q Consensus 342 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~l~~r~~~~~~~~~~~~~i~ig~~l~ 420 (525)
+..+. .++.++... .+ .........+.+++..+..|+.+. +.||++++ +.+.++++++
T Consensus 268 fvg~s~~lp~~~~~~---~~-------~~~~l~~~~l~~l~~~l~rplgG~----LADRiG~~-------~vl~~~~i~~ 326 (462)
T PRK15034 268 FIGFSAGFAMLAKTQ---FP-------DVNILRLAFFGPFIGAIARSVGGA----ISDKFGGV-------RVTLINFIFM 326 (462)
T ss_pred HHHHHHHHHHHHHHH---cC-------hHHHHHHHHHHHHHHHHHHHhhHH----HHHhcCch-------HHHHHHHHHH
Confidence 33333 222222211 11 001111122335556666777766 78886654 6677777666
Q ss_pred HHHHHHHHHHHHHHHhhhhhcCCcCCCCCCccchHHHHHHHHHHHHHHHHHHhhhhHHHhhhccCc--------------
Q 045562 421 AASMTGATLVEMKRLKTAEEYGLVDKPNVTIPMSVWWLIPQYALLGVSEAFTMVGLQEFFYDQVPT-------------- 486 (525)
Q Consensus 421 ~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~-------------- 486 (525)
.+......... |. +...+++.....++...++.++.+...+-++.+..|+
T Consensus 327 ~i~~~~~~l~l---------------p~-~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~ 390 (462)
T PRK15034 327 AIFSALLFLTL---------------PG-TGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDE 390 (462)
T ss_pred HHHHHHHHHHh---------------cc-ccccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchh
Confidence 66543322221 00 0013455555555555566666677777777776764
Q ss_pred -------hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC
Q 045562 487 -------ELRSVGLSLYLSIFGVGSFLSSFLISAIENATGG 520 (525)
Q Consensus 487 -------~~rg~~~gi~~~~~~lg~~lg~~~~~~i~~~~~~ 520 (525)
++.|..+|+......+|+++-|.+.+...+.+|+
T Consensus 391 ~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~ 431 (462)
T PRK15034 391 QAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGS 431 (462)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCC
Confidence 2678899999999999999999999999888865
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.5e-20 Score=196.11 Aligned_cols=157 Identities=12% Similarity=0.091 Sum_probs=127.6
Q ss_pred HHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhccCCCCccCCCCc
Q 045562 64 ITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVLGLGLLTLSAVLLSGSTSECQNTSC 143 (525)
Q Consensus 64 ~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 143 (525)
.+++++ +|.+..+.+++.+.+.++..++.++.|+++||+ |||+.+..+.++..++..++......
T Consensus 50 ~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~~~~------------- 114 (438)
T TIGR00712 50 MPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILSAAVMLLMGFVPWA------------- 114 (438)
T ss_pred hHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhcc-CCceehHHHHHHHHHHHHHHhccccc-------------
Confidence 346665 599999999999999999999999999999999 99999999988888887776554210
Q ss_pred CCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhhHHHHhhhhHHHhhhhhhc-ccccchh
Q 045562 144 SANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWYFGMCMGTFVTLTVLNYI-QDNLNWI 222 (525)
Q Consensus 144 ~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l-~~~~g~~ 222 (525)
..+...+++.|++.|++.+...+.....+.|.+|+++ |++++++++...++|+.++|.+.+.+ .+..+||
T Consensus 115 ---~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~------rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~ 185 (438)
T TIGR00712 115 ---TSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSE------RGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWH 185 (438)
T ss_pred ---cchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCccc------chhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhH
Confidence 0125677788999999999988988999999999998 99999999999999999998887754 4457899
Q ss_pred hhHHHHHHHHHHHHHHHHhccc
Q 045562 223 LGFGIPCILMVIALVVFLLGTK 244 (525)
Q Consensus 223 ~~f~~~~~~~~~~~~~~~~~~~ 244 (525)
.+|++.++..++..+..+...+
T Consensus 186 ~~f~~~~~~~~i~~~~~~~~~~ 207 (438)
T TIGR00712 186 AALYFPAICAIIVALFAFAMMR 207 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc
Confidence 9999988776665444443333
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.5e-19 Score=211.39 Aligned_cols=362 Identities=14% Similarity=0.055 Sum_probs=219.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCh--HHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHH
Q 045562 40 RSALFIIGVEMAERFAYYGVSSNLITYLTGPLAQST--ATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIY 117 (525)
Q Consensus 40 ~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~--~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~ 117 (525)
+....+++..++.++...+....+..++...++.+. ...+++.+++.+...++.+++|+++||+ |||++++++.++.
T Consensus 9 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~-grk~~l~~~~~~~ 87 (1146)
T PRK08633 9 IGFLPLLLTQFLNAFNDLGHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKF-SKNRVIRIVKLFE 87 (1146)
T ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccc-cHHHHHHHHHHHH
Confidence 345555566666666555555556556655555543 3468888899999999999999999999 9999999988776
Q ss_pred HHHHHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhh
Q 045562 118 VLGLGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWW 197 (525)
Q Consensus 118 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 197 (525)
++..+++.+.... .+++.+++.|+++|++.+...|...++++|.+|+++ |++++++.
T Consensus 88 ~~~~~~~~~~~~~-----------------~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~ 144 (1146)
T PRK08633 88 VGLTLLIVLAYYL-----------------GWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKEN------LSRANGLL 144 (1146)
T ss_pred HHHHHHHHHHHHH-----------------ccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCccc------chhhhhHH
Confidence 6655554443210 126889999999999999999999999999999998 99999999
Q ss_pred HHHHhhhhHHHhhhhhhcccc--------c-chhhhHHHHHHHHH-HHHHHHHhcccceeecCCCCCCchhhhHHHHHHH
Q 045562 198 YFGMCMGTFVTLTVLNYIQDN--------L-NWILGFGIPCILMV-IALVVFLLGTKIYRYSLKGEEKSPFLRIGQVFVT 267 (525)
Q Consensus 198 ~~~~~~g~~~gp~~~~~l~~~--------~-g~~~~f~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (525)
..+.++|.++||.+++++.+. + +|.+.+.+..+... ++++..+. .++.+...+.++ +...
T Consensus 145 ~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~-------- 214 (1146)
T PRK08633 145 EAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLLAVAVLGLIFAYR-LPKVPAAAPEVF-DKKK-------- 214 (1146)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHHHHHhc-CcCCCCCCcccc-cccc--------
Confidence 999999999999999998765 2 33333333332222 22222222 222111111100 0000
Q ss_pred HHhccccCCchhhhHhhhhCCCCCCCccchhhhhHHHhhcCCCCCCCcccchhhHHHHHHHHHHHH-HHHHHHHHHHHHh
Q 045562 268 AVRNWRITPSAIALEEEARGTLPHQSSEQFKFLNKALLASNGSKGYGKVCSVGEVEEAKALLRLVP-IWTTCLVYAIVFA 346 (525)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~ 346 (525)
.....+..+. ++ ...+.+.++..+. ..+.....+....
T Consensus 215 -------------------------~~~~~~~~~~-----------~~-----~l~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (1146)
T PRK08633 215 -------------------------YLFPKLLWRN-----------LK-----LLRSDRVLWLAIIGLSYFWFISQLAQA 253 (1146)
T ss_pred -------------------------cccHHHHHHH-----------HH-----HHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 0000000000 00 0111111211111 1111111111111
Q ss_pred hccchhhhhhhccccCcccccccChhhhhhhhhHHHHHHHHhhhhhhhhhhhhhccCCCCCCchHHHHHHHHHHHHHHHH
Q 045562 347 QSSTFFTKQGVTMDRSVVADFQIPAASLQSFISLAIVLTIPIYDRIFVPIARTFTRKPAGITMLQRIGTGMFLSAASMTG 426 (525)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~l~~r~~~~~~~~~~~~~i~ig~~l~~i~~~~ 426 (525)
.++.++.. ....+ .....+.+.....+..++...+.++ +.||.+++ +.+.++.++.+++.++
T Consensus 254 ~~~~~~~~-~~g~s------~~~~~g~~~~~~~ig~~~g~~~~g~----l~~r~~~~-------~~~~~~~~~~~~~~~~ 315 (1146)
T PRK08633 254 NFPAYAKE-VLGLD------NTFQVQYLLAASAIGIGIGSLLAGR----LSGRHIEL-------GLVPLGALGLALSLFL 315 (1146)
T ss_pred hhHHHHHH-HhCCC------cHHHHHHHHHHHHHHHHHHHHHHHH----HhCCceEc-------cchhHHHHHHHHHHHH
Confidence 12221111 11111 0001223333444444444444443 56665433 4566677777777666
Q ss_pred HHHHHHHHHhhhhhcCCcCCCCCCccchHHHHHHHHHHHHHHHHHHhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHH
Q 045562 427 ATLVEMKRLKTAEEYGLVDKPNVTIPMSVWWLIPQYALLGVSEAFTMVGLQEFFYDQVPTELRSVGLSLYLSIFGVGSFL 506 (525)
Q Consensus 427 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~l 506 (525)
+.+. .+.+.+++..++.+++.++..+..++++.+.+|++.||+++|++++...+|..+
T Consensus 316 ~~~~----------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~ 373 (1146)
T PRK08633 316 LPTA----------------------PSLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLL 373 (1146)
T ss_pred HHHh----------------------hhHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHH
Confidence 6653 256667777888899999999999999999999999999999999999999988
Q ss_pred HHHHHHHhhh
Q 045562 507 SSFLISAIEN 516 (525)
Q Consensus 507 g~~~~~~i~~ 516 (525)
++.+.+.+..
T Consensus 374 ~~~~~~~l~~ 383 (1146)
T PRK08633 374 FLALTTLFSG 383 (1146)
T ss_pred HHHHHHHHHH
Confidence 8877766543
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.8e-19 Score=210.82 Aligned_cols=349 Identities=11% Similarity=0.056 Sum_probs=205.7
Q ss_pred HhccccCCCh-HHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHH--HHHHHHHHHHhhhhccCCCCccCCCC
Q 045562 66 YLTGPLAQST-ATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLI--YVLGLGLLTLSAVLLSGSTSECQNTS 142 (525)
Q Consensus 66 yl~~~lg~s~-~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~ 142 (525)
.+.++.+.+. ...++..+++.+...+..+++|+++||+ |||+++...... ......+..+..
T Consensus 41 ~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~-~rk~~~~~~~~~~~~~~~~~~~~~~~-------------- 105 (1140)
T PRK06814 41 GLSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKY-DKAKLAKILKFAEIGIAALAIYGFHL-------------- 105 (1140)
T ss_pred HhccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhc-cHHHHHHHHHHHHHHHHHHHHHHHHH--------------
Confidence 3444444433 3467778889999999999999999999 999986442221 111211222221
Q ss_pred cCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhhHHHHhhhhHHHhhhhhhcccccchh
Q 045562 143 CSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWYFGMCMGTFVTLTVLNYIQDNLNWI 222 (525)
Q Consensus 143 ~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l~~~~g~~ 222 (525)
.+++.++++|+++|++.+...|+..+++.|++|+++ |++++++.+.+.++|.++||.++|++....||+
T Consensus 106 -----~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~------~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~ 174 (1140)
T PRK06814 106 -----NSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDE------LLGANALVEAGTFIAILLGTIIGGLATISGNFV 174 (1140)
T ss_pred -----hhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccc------cchhhHHHHHHHHHHHHHHHHHHHHHHhccccH
Confidence 127889999999999999999999999999999998 999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHhcccceeecCCCC--CCchhhhHHHHHHHHHhccccCCchhhhHhhhhCCCCCCCccchhhh
Q 045562 223 LGFGIPCILMVIALVVFLLGTKIYRYSLKGE--EKSPFLRIGQVFVTAVRNWRITPSAIALEEEARGTLPHQSSEQFKFL 300 (525)
Q Consensus 223 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (525)
..|...++..+++++..+..++. +..+++. +.+...+....+.
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------------------------- 219 (1140)
T PRK06814 175 ILVALLMGIAVLGWLASLFIPKT-GNAAPDLKIDRNIIRSTITLLK---------------------------------- 219 (1140)
T ss_pred HHHHHHHHHHHHHHHHHhhCCCC-CCCCCCCeeccchHHHHHHHHH----------------------------------
Confidence 99855554444444443333321 1111111 0000000000000
Q ss_pred hHHHhhcCCCCCCCcccchhhHHHHHHHHHHHHH-HHHHHHHHHHHhhccchhhhhhhccccCcccccccChhhhhhhhh
Q 045562 301 NKALLASNGSKGYGKVCSVGEVEEAKALLRLVPI-WTTCLVYAIVFAQSSTFFTKQGVTMDRSVVADFQIPAASLQSFIS 379 (525)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (525)
.....+.++..... ......+.....+++.++.. .++. .....+.+.+...
T Consensus 220 --------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-------~~g~-~~~~~g~~~~~~~ 271 (1140)
T PRK06814 220 --------------------YAKADKRIWLAILGISWFWLVGAVVLSQLPLLAKE-------TLGG-DENVATLFLAVFS 271 (1140)
T ss_pred --------------------HHhcCchHHHHHHHHHHHHHHHHHHHHHhHHHHHH-------HcCC-chHHHHHHHHHHH
Confidence 01111222222211 11112222222222222211 1111 1112334555555
Q ss_pred HHHHHHHHhhhhhhhhhhhhhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcC-CcCCCCCCccchHHHH
Q 045562 380 LAIVLTIPIYDRIFVPIARTFTRKPAGITMLQRIGTGMFLSAASMTGATLVEMKRLKTAEEYG-LVDKPNVTIPMSVWWL 458 (525)
Q Consensus 380 ~~~i~~~~l~~~~~~~l~~r~~~~~~~~~~~~~i~ig~~l~~i~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~l 458 (525)
+..+++..+.++ +.+|..++ +.+..+.++.++..+...+... +...... .+.--......+.+.+
T Consensus 272 ~g~~ig~~~~g~----l~~~~~~~-------~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 337 (1140)
T PRK06814 272 VGVAVGSFLASK----LSEGRITL-------LYVPIGALLMGLFGLDLAFASS---SVPAEPAQLKSILVFLSKRHGWRI 337 (1140)
T ss_pred HHHHHHHHHHHH----HhCCceee-------eeehHHHHHHHHHHHHHHhccc---ccccccccccchhhhhcccccHHH
Confidence 666666666555 44443222 2344444444443332222100 0000000 0000000001355667
Q ss_pred HHHHHHHHHHHHHHhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 045562 459 IPQYALLGVSEAFTMVGLQEFFYDQVPTELRSVGLSLYLSIFGVGSFLSSFLISAIENA 517 (525)
Q Consensus 459 ~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~~~~~~i~~~ 517 (525)
.+..++.|++.++..+...+++.+.+|+++||+++|++++...+|..+++.+.+.+.+.
T Consensus 338 ~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~ 396 (1140)
T PRK06814 338 LIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQAL 396 (1140)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 77888899999999999999999999999999999999999999999999999988753
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.7e-19 Score=181.40 Aligned_cols=327 Identities=13% Similarity=0.067 Sum_probs=198.0
Q ss_pred HHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhc----cchHHHH-HHHHHHHHHHHHHHHHhhhhccCCC
Q 045562 61 SNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSF----LGRYRAI-IIASLIYVLGLGLLTLSAVLLSGST 135 (525)
Q Consensus 61 ~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~----~Grr~~~-~~~~~~~~~~~~l~~~~~~~~~~~~ 135 (525)
+.+|.++ +++|+|.++.++.... .+...+ .+++|.++||+ .||||.+ +.+.++..+....+.+... .
T Consensus 9 ~~~~~~~-~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~---~-- 80 (356)
T TIGR00901 9 NTLPYWL-RSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVP---S-- 80 (356)
T ss_pred hHHHHHH-HHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCc---c--
Confidence 3455555 5789999999988644 444444 89999999997 3788874 5666666666555554421 0
Q ss_pred CccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhhHHHHhhhhHHHhhhhhhc
Q 045562 136 SECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWYFGMCMGTFVTLTVLNYI 215 (525)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l 215 (525)
.+.+.+....++.+++.+...++..+++.|++|+++ |+++.++...+.++|..+++.+++++
T Consensus 81 ------------~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~------r~~~~~~~~~~~~~G~~~~~~l~~~l 142 (356)
T TIGR00901 81 ------------TDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEE------LGYGSTIYIVGYRAGMLLSGSLALVL 142 (356)
T ss_pred ------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhh------hchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 225556666677788888888999999999999988 99999999999999999999999999
Q ss_pred ccccc--------hhhhHHHHHHHHHHHHHHHHhcccceeecCCCCCCchhhhHHHHHHHHHhccccCCchhhhHhhhhC
Q 045562 216 QDNLN--------WILGFGIPCILMVIALVVFLLGTKIYRYSLKGEEKSPFLRIGQVFVTAVRNWRITPSAIALEEEARG 287 (525)
Q Consensus 216 ~~~~g--------~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (525)
....| ||.+|++.++..++..+..+...|+..+.++++ ++...+..+
T Consensus 143 ~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~~~~~e~~~~~~~~-~~~~~~~~~------------------------ 197 (356)
T TIGR00901 143 ASPEFANTGLITLWGYIFFWTALLILPGLLVTLFLAKEPQEDASVP-KPLTQAVLK------------------------ 197 (356)
T ss_pred hhhcccccccccccHHHHHHHHHHHHHHHHHHHHhccCCCcccccc-hhHHHHHHH------------------------
Confidence 88888 999999988877666555454444321111110 000000000
Q ss_pred CCCCCCccchhhhhHHHhhcCCCCCCCcccchhhHHHH--HHHHHHHHH-HHHHHHHHHHHhhccchhhhhhhccccCcc
Q 045562 288 TLPHQSSEQFKFLNKALLASNGSKGYGKVCSVGEVEEA--KALLRLVPI-WTTCLVYAIVFAQSSTFFTKQGVTMDRSVV 364 (525)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (525)
+ .. ...+++ +.++..... ++....++......+.++..
T Consensus 198 -------------------------~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---------- 238 (356)
T TIGR00901 198 -------------------------P---IR-EFFQRKNMIQALLLLLLIVLYKLGDSAATVLTTLFLLD---------- 238 (356)
T ss_pred -------------------------H---HH-HHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------
Confidence 0 00 001111 112222111 11222222222222222211
Q ss_pred cccccChhhhhhhh---h-HHHHHHHHhhhhhhhhhhhhhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 045562 365 ADFQIPAASLQSFI---S-LAIVLTIPIYDRIFVPIARTFTRKPAGITMLQRIGTGMFLSAASMTGATLVEMKRLKTAEE 440 (525)
Q Consensus 365 ~~~~~~~~~~~~~~---~-~~~i~~~~l~~~~~~~l~~r~~~~~~~~~~~~~i~ig~~l~~i~~~~~~~~~~~~~~~~~~ 440 (525)
.+.++..+.... . +..++..++.+ ++.||+++| +.+.++.++.+++.....+......+ . +
T Consensus 239 --~g~~~~~~g~~~~~~~~~~~~~g~~~~g----~l~~r~g~~-------~~l~~~~~~~~~~~~~~~~~~~~~~~-~-~ 303 (356)
T TIGR00901 239 --MGFSKEEIALVAKINGLLGAILGGLIGG----IIMQPLNIL-------YALLLFGIVQALTNAGFVWLASNGHH-D-G 303 (356)
T ss_pred --cCCCHHHHHHHhHHHHHHHHHHHHHHHH----HHHhhhhHH-------HHHHHHHHHHHHHHHHHHHHHhcCcc-c-c
Confidence 112222222222 2 22233344433 367776544 66777777777766655443100000 0 0
Q ss_pred cCCcCCCCCCccchHHHHHHHHHHHHHHHHHHhhhhHHHhhhccCchhHHHHHHHHHHHHH
Q 045562 441 YGLVDKPNVTIPMSVWWLIPQYALLGVSEAFTMVGLQEFFYDQVPTELRSVGLSLYLSIFG 501 (525)
Q Consensus 441 ~g~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~ 501 (525)
.+ +.+.+.+....++.+++.++.++...++..+.+|+++||+++|++++...
T Consensus 304 ~~---------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 304 IT---------FPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA 355 (356)
T ss_pred cc---------cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence 00 13456677777888999999999999999999999999999999887654
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.2e-18 Score=181.28 Aligned_cols=357 Identities=13% Similarity=0.071 Sum_probs=212.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHHHHHHHH
Q 045562 45 IIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVLGLGLL 124 (525)
Q Consensus 45 ~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~~~~~l~ 124 (525)
+.+..|+...++-...++++.|+++++|++..+.|++.+.+.++..++++++|+++||+++||+++.++.++..++..+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~ 86 (418)
T TIGR00889 7 LKFMSFLQWFIWGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFA 86 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 44555555566666679999999999999999999999999999999999999999998345778888777776666666
Q ss_pred HHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhcc--------ccCCCcccccccceehhh
Q 045562 125 TLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQ--------FDSQHPLESKLKSSFFNW 196 (525)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~--------~~~~~~~~~~~r~~~~~~ 196 (525)
.+.++ .+.+++.|++.+++.+...+...+...+. .+... |.+.+|
T Consensus 87 ~~~~~--------------------~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~------~~r~~G- 139 (418)
T TIGR00889 87 AQVTT--------------------PAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFP------PIRVMG- 139 (418)
T ss_pred HHhcC--------------------HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCC------Ceeeeh-
Confidence 65543 56777888888888776666655543222 22222 566665
Q ss_pred hHHHHhhhhHHHhhhhhhcccccchhhhHHHHHHHHHHHHHHHHhcccceeecCCCCCCchhhhHHHHHHHHHhccccCC
Q 045562 197 WYFGMCMGTFVTLTVLNYIQDNLNWILGFGIPCILMVIALVVFLLGTKIYRYSLKGEEKSPFLRIGQVFVTAVRNWRITP 276 (525)
Q Consensus 197 ~~~~~~~g~~~gp~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (525)
.+|.++||.+++.+.....|. +|++.+++.++..+..+. .++.++.++++ +. +..+.. .
T Consensus 140 -----~lG~~ig~~l~g~l~~~~~~~-~f~~~~~~~~~~~~~~~~-~~e~~~~~~~~--~~--~~~~~~-------~--- 198 (418)
T TIGR00889 140 -----TIGFIAAMWAVSLLDIELSNI-QLYITAGSSALLGVFALT-LPDIPVAKSTA--KM--SIKVML-------G--- 198 (418)
T ss_pred -----hHHHHHHHHHHHHhcccchhH-HHHHHHHHHHHHHHHHhc-CCCCCCCcccc--cc--CHHHHh-------h---
Confidence 478888999998874433354 455555554444443332 33221110000 00 000000 0
Q ss_pred chhhhHhhhhCCCCCCCccchhhhhHHHhhcCCCCCCCcccchhhHHHHHHHHHHHH-HHHHHHHHHHHHhhccchhhhh
Q 045562 277 SAIALEEEARGTLPHQSSEQFKFLNKALLASNGSKGYGKVCSVGEVEEAKALLRLVP-IWTTCLVYAIVFAQSSTFFTKQ 355 (525)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 355 (525)
.+. . ...+.++++.... .++........+...+......
T Consensus 199 --------------------~~~-------------------~-~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (418)
T TIGR00889 199 --------------------LDA-------------------F-ILFKNKRMAIFFFFSMLLGAPLQITNIFGNGFLHEF 238 (418)
T ss_pred --------------------hhH-------------------H-HHhcCCCeeeHHHHHHHHHhHHHHHHHhHHHHHHHh
Confidence 000 0 0000011111111 1111111111111111111111
Q ss_pred hhccccCccccc-ccChhhhhhhhhHHHHHHHHhhhhhhhhhhhhhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 045562 356 GVTMDRSVVADF-QIPAASLQSFISLAIVLTIPIYDRIFVPIARTFTRKPAGITMLQRIGTGMFLSAASMTGATLVEMKR 434 (525)
Q Consensus 356 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~l~~~~~~~l~~r~~~~~~~~~~~~~i~ig~~l~~i~~~~~~~~~~~~ 434 (525)
. .+.....++ ....+.......+..++...+.++ +.||+++| +.+.++.++.++++.........
T Consensus 239 g--~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~----l~dr~g~r-------~~l~~~~~~~~v~~~l~~~~~~~- 304 (418)
T TIGR00889 239 G--RNPEFADSFVVKNASIWMSLSQFSEIFFILTIPF----FLKRFGIK-------KVMLLSLVAWALRFGFFAYGDPE- 304 (418)
T ss_pred c--ccccccchhhhhhHHHHHHHHHHHHHHHHHHHHH----HHHHhCcH-------HHHHHHHHHHHHHHHHHHHcCcc-
Confidence 1 010000000 011233344444444444544444 67776554 77888888888877666542100
Q ss_pred HhhhhhcCCcCCCCCCccchHHHHHHHHHHHHHHHHHHhhhhHHHhhhccCchhHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 045562 435 LKTAEEYGLVDKPNVTIPMSVWWLIPQYALLGVSEAFTMVGLQEFFYDQVPTELRSVGLSLYL-SIFGVGSFLSSFLISA 513 (525)
Q Consensus 435 ~~~~~~~g~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~-~~~~lg~~lg~~~~~~ 513 (525)
..+++.+....++.+++++...+....++.+..|++.||+++|+.+ ....+|+.+||.+.|.
T Consensus 305 -----------------~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~ 367 (418)
T TIGR00889 305 -----------------YFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGV 367 (418)
T ss_pred -----------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 1123455667788999999999999999999999999999999997 6788999999999999
Q ss_pred hhhhccC
Q 045562 514 IENATGG 520 (525)
Q Consensus 514 i~~~~~~ 520 (525)
+.+.+|+
T Consensus 368 l~~~~g~ 374 (418)
T TIGR00889 368 MVEKMFA 374 (418)
T ss_pred HHHHhcc
Confidence 9998875
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.5e-20 Score=190.26 Aligned_cols=180 Identities=17% Similarity=0.210 Sum_probs=160.8
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHH
Q 045562 38 GWRSALFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIY 117 (525)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~ 117 (525)
..+.+..+....+.+...-|.+...++ =.++.+|.+....|++...+.+.+.+..|+.|+++||+ .||+++..|..++
T Consensus 31 ~~~~l~il~~vnlmny~Dr~~iagv~~-~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadry-NR~~v~~vG~~iW 108 (493)
T KOG1330|consen 31 PTLTLVILCLVNLMNYADRYTIAGVLK-EVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRY-NRKRVIAVGIFIW 108 (493)
T ss_pred chHHHHHHHHHHHHHHhhhhhhhhhhH-HHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhc-CcceEEeeHHHHH
Confidence 344556667778888888887766554 47789999999999999999999999999999999999 9999999999999
Q ss_pred HHHHHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhh
Q 045562 118 VLGLGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWW 197 (525)
Q Consensus 118 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 197 (525)
.++.++.+++.. +|.+.+.|.+.|+|.+...|..+++++|.||+++ |++.++++
T Consensus 109 ~~Av~~~~fs~~--------------------Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~------Rs~~~~if 162 (493)
T KOG1330|consen 109 TLAVFASGFSNH--------------------FWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDK------RSRVLGIF 162 (493)
T ss_pred HHHHHHHHHHHH--------------------HHHHHHHHHHhccchhhhcccchhHhhhcCcchh------hhHHHHHh
Confidence 999999998854 8999999999999999999999999999999999 99999999
Q ss_pred HHHHhhhhHHHhhhhhhcccccc-hhhhHHHHHHHHHHHHHHHHhcccc
Q 045562 198 YFGMCMGTFVTLTVLNYIQDNLN-WILGFGIPCILMVIALVVFLLGTKI 245 (525)
Q Consensus 198 ~~~~~~g~~~gp~~~~~l~~~~g-~~~~f~~~~~~~~~~~~~~~~~~~~ 245 (525)
|++..+|..+|.+++..+.+..+ ||++|.+.+++.++..++.++..++
T Consensus 163 y~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~e 211 (493)
T KOG1330|consen 163 YFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVRE 211 (493)
T ss_pred hhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhccC
Confidence 99999999999999999988777 9999999998888876666665554
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.7e-18 Score=181.15 Aligned_cols=359 Identities=12% Similarity=0.117 Sum_probs=225.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhc----cchHHH-HHHH
Q 045562 39 WRSALFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSF----LGRYRA-IIIA 113 (525)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~----~Grr~~-~~~~ 113 (525)
+|+.+.++...+......+...+.+|.|++ +.|.+..+++.. +..... .+..+++|.++||+ +||||. +..+
T Consensus 11 ~~~~~~~~~l~~~~gl~~~~~~~~l~~~l~-~~g~~~~~ig~~-~~~~~~-~~~~~l~gpl~Dr~~~~~~Grrr~~ll~~ 87 (491)
T PRK11010 11 QPNSAILLILGFASGLPLALTSGTLQAWMT-VENIDLKTIGFF-SLVGQA-YVFKFLWSPLMDRYTPPFLGRRRGWLLAT 87 (491)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCHHHHHHH-HHHHHH-HHHHHHHHHHHHcccccCCCCchHHHHHH
Confidence 556777888888888888888899999987 459999999886 233333 26889999999996 167764 6677
Q ss_pred HHHHHHHHHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCccccccccee
Q 045562 114 SLIYVLGLGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSF 193 (525)
Q Consensus 114 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 193 (525)
.+..+++...+++... ..+.+.+.+.+++.+++.+...+...++..|++|+++ |+++
T Consensus 88 ~i~~~~~~~~~a~~~~-----------------~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~------rg~~ 144 (491)
T PRK11010 88 QLLLLVAIAAMGFLEP-----------------GTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEE------RGAG 144 (491)
T ss_pred HHHHHHHHHHHHHcCC-----------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh------hHHH
Confidence 7777777777666421 0236778888999999999999999999999999988 9999
Q ss_pred hhhhHHHHhhhhHHHhhhhhhccc-ccchhhhHHHHHHHHHHHHHHHHhcccceeecCCCCCCchhhhHHHHHHHHHhcc
Q 045562 194 FNWWYFGMCMGTFVTLTVLNYIQD-NLNWILGFGIPCILMVIALVVFLLGTKIYRYSLKGEEKSPFLRIGQVFVTAVRNW 272 (525)
Q Consensus 194 ~~~~~~~~~~g~~~gp~~~~~l~~-~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (525)
.++...+..+|..+++.+++++.+ ..|||.+|++.++..++..+..+.. ++.++.++++ ++......+
T Consensus 145 ~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~~~~-~e~~~~~~~~-~~~~~~~~~--------- 213 (491)
T PRK11010 145 AAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCIIATLLA-PEPTDTIPVP-KTLEQAVVA--------- 213 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHhc-CCCccccccc-cchhhhHHH---------
Confidence 999999999999999999999988 5799999999887766655544443 3211110111 000000000
Q ss_pred ccCCchhhhHhhhhCCCCCCCccchhhhhHHHhhcCCCCCCCcccchhhHHHHHHHHHHH-HHHHHHHHHHHHHhhccch
Q 045562 273 RITPSAIALEEEARGTLPHQSSEQFKFLNKALLASNGSKGYGKVCSVGEVEEAKALLRLV-PIWTTCLVYAIVFAQSSTF 351 (525)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~ 351 (525)
++++. .. ++..+... ..+......+..+...+.+
T Consensus 214 ----------------------------------------~l~~~----~~-~~~~~~~ll~~~l~~~~~~~~~~~~~~~ 248 (491)
T PRK11010 214 ----------------------------------------PLRDF----FG-RNNAWLILLLIVLYKLGDAFAMSLTTTF 248 (491)
T ss_pred ----------------------------------------HHHHH----Hc-CcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000 11 11111111 1111112222222222222
Q ss_pred hhhhhhccccCcccccccChhhhhhhh----hHHHHHHHHhhhhhhhhhhhhhccCCCCCCchHHHHHHHHHHHHHHHHH
Q 045562 352 FTKQGVTMDRSVVADFQIPAASLQSFI----SLAIVLTIPIYDRIFVPIARTFTRKPAGITMLQRIGTGMFLSAASMTGA 427 (525)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~~~~l~~~~~~~l~~r~~~~~~~~~~~~~i~ig~~l~~i~~~~~ 427 (525)
+.. . .+.+........ .+..++...+.+. +.||+++| +.+.++.++.+++.+.+
T Consensus 249 l~~-~----------~G~s~~~~g~~~~~~g~i~~iiG~ll~G~----L~dr~g~~-------~~l~i~~~l~~l~~l~~ 306 (491)
T PRK11010 249 LIR-G----------VGFDAGEVGLVNKTLGLLATIVGALYGGI----LMQRLSLF-------RALMIFGILQGVSNAGY 306 (491)
T ss_pred HHH-h----------cCCCHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhHH-------HHHHHHHHHHHHHHHHH
Confidence 221 1 122222222222 2333344444444 67776544 44444444444443322
Q ss_pred HHHHHHHHhhhhhcCCcCCCCCCccchHHHHHHHHHHHHHHHHHHhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHH
Q 045562 428 TLVEMKRLKTAEEYGLVDKPNVTIPMSVWWLIPQYALLGVSEAFTMVGLQEFFYDQVPTELRSVGLSLYLSIFGVGSFLS 507 (525)
Q Consensus 428 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg 507 (525)
...... ..+.+.+....++..++.++..+...++..+.+|++.+++..|+.+....+|..++
T Consensus 307 ~~l~~~------------------~~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~ 368 (491)
T PRK11010 307 WLLSIT------------------DKNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYV 368 (491)
T ss_pred HHHHhc------------------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHH
Confidence 211100 12344444455665556666667778888999999999999999999999999999
Q ss_pred HHHHHHhhhhcc
Q 045562 508 SFLISAIENATG 519 (525)
Q Consensus 508 ~~~~~~i~~~~~ 519 (525)
+.+.|.+.+.+|
T Consensus 369 ~~~~G~l~~~~G 380 (491)
T PRK11010 369 GPVAGWFVEAHG 380 (491)
T ss_pred HHHHHHHHHHhC
Confidence 999999998765
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.84 E-value=7e-19 Score=176.94 Aligned_cols=362 Identities=15% Similarity=0.092 Sum_probs=260.2
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHH
Q 045562 39 WRSALFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYV 118 (525)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~ 118 (525)
.++.+.+....+...+..+.+.+.+.+++.+++|+|+.|.+++.....+..++.+++-|.+.||+ |.|++.+++.++.+
T Consensus 12 ~~~~L~~S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drf-GgR~~~~~s~~l~~ 90 (417)
T COG2223 12 ARRNLWLSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRF-GGRKWTILSMLLLL 90 (417)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhccc-CchHHHHHHHHHHH
Confidence 34455577777888888888889999999999999999999999999999999999999999999 88888888999888
Q ss_pred HHHHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhhH
Q 045562 119 LGLGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWY 198 (525)
Q Consensus 119 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 198 (525)
+-.+..+++...+ +.+.+++.+++.|++.+- .....+++++++|+++ +|.++|++-
T Consensus 91 IP~~~~~~a~~~~-----------------~~~~ll~~gll~G~~Gas-Fav~m~~~s~~fP~~~------qG~AlGI~g 146 (417)
T COG2223 91 IPCLGLAFAVTYP-----------------STWQLLVIGLLLGLAGAS-FAVGMPNASFFFPKEK------QGLALGIAG 146 (417)
T ss_pred HHHHHHHHHccCC-----------------chHHHHHHHHHHhcccce-ehcccccccccCChhh------hhHHHHHhc
Confidence 8888888876522 247888999999988554 5678899999999999 999999999
Q ss_pred HHHhhhhHHHhhhhhhcccccc---hhhhHHHHHHHHHHHHHHHHhcccceeecCCCCCCchhhhHHHHHHHHHhccccC
Q 045562 199 FGMCMGTFVTLTVLNYIQDNLN---WILGFGIPCILMVIALVVFLLGTKIYRYSLKGEEKSPFLRIGQVFVTAVRNWRIT 275 (525)
Q Consensus 199 ~~~~~g~~~gp~~~~~l~~~~g---~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (525)
..|+|..+...++.++...+| |+.+..+.++.+++..+..++..++.++.++.. ++..+ .
T Consensus 147 -~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~~--~~~~~--~------------ 209 (417)
T COG2223 147 -AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMNDVPEHRASV--KPQLP--A------------ 209 (417)
T ss_pred -cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhccc--cccch--h------------
Confidence 899999999999999888888 999998888888887777777666544332222 11000 0
Q ss_pred CchhhhHhhhhCCCCCCCccchhhhhHHHhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhc-cchhhh
Q 045562 276 PSAIALEEEARGTLPHQSSEQFKFLNKALLASNGSKGYGKVCSVGEVEEAKALLRLVPIWTTCLVYAIVFAQS-STFFTK 354 (525)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~ 354 (525)
+ + +.+..++..+....+.+.+...+..+..+ +.++.+
T Consensus 210 -------------------------------------~---~--~~v~~~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~ 247 (417)
T COG2223 210 -------------------------------------Q---L--KAVFSNKDTWLLSLLYFATFGGFVGFSAYLPMYLVT 247 (417)
T ss_pred -------------------------------------H---H--HHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0 01232344445555555555555555444 333332
Q ss_pred hhhccccCcccccccChhhhhhhhhHHHHHHHHhhhhhhhhhhhhhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 045562 355 QGVTMDRSVVADFQIPAASLQSFISLAIVLTIPIYDRIFVPIARTFTRKPAGITMLQRIGTGMFLSAASMTGATLVEMKR 434 (525)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~l~~r~~~~~~~~~~~~~i~ig~~l~~i~~~~~~~~~~~~ 434 (525)
+ ++. .....+.+....++...+.-|+.+. +.||++.+ +...+.+..++++.....+..+.
T Consensus 248 ~-------fg~-~~~~Ag~~a~~f~~~g~l~Rp~GG~----LsDR~Gg~-------rv~~~~f~~~~~~~~~l~~~~~~- 307 (417)
T COG2223 248 Q-------FGL-SPVTAGLIAFLFPLIGALARPLGGW----LSDRIGGR-------RVTLAVFVGMALAAALLSLFLTG- 307 (417)
T ss_pred h-------cCC-ChhhHHHHHHHHHHHHHHHHhccch----hhhhccch-------hHHHHHHHHHHHHHHHHHccccc-
Confidence 1 121 2333445667777888888888777 78886554 77778888888877777764211
Q ss_pred HhhhhhcCCcCCCCCCccchHHHHHHHHHHHHHHHHHHhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045562 435 LKTAEEYGLVDKPNVTIPMSVWWLIPQYALLGVSEAFTMVGLQEFFYDQVPTELRSVGLSLYLSIFGVGSFLSSFLISAI 514 (525)
Q Consensus 435 ~~~~~~~g~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~~~~~~i 514 (525)
..+ ..+.+.....++...+..++-+...+..+....|+ +-|...|+......+|++.=|...+..
T Consensus 308 ----~~~----------~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~-~~G~v~G~vga~G~lGGf~lp~~~g~~ 372 (417)
T COG2223 308 ----FGH----------GGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPK-ETGAVTGIVGAIGGLGGFFLPLAFGVS 372 (417)
T ss_pred ----ccc----------CcchHHHHHHHHHHHHHhccCcchheeechHHHHh-hhhHHHHHHHHhccccccchhHHHHHH
Confidence 000 13444444445555555555566666666666655 578899999999999999999999999
Q ss_pred hhhcc
Q 045562 515 ENATG 519 (525)
Q Consensus 515 ~~~~~ 519 (525)
.+.+|
T Consensus 373 ~~~tg 377 (417)
T COG2223 373 LDLTG 377 (417)
T ss_pred HHhcc
Confidence 88887
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.5e-19 Score=186.84 Aligned_cols=349 Identities=15% Similarity=0.117 Sum_probs=224.5
Q ss_pred cccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhccCCCCccCCCCcCCCch
Q 045562 69 GPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVLGLGLLTLSAVLLSGSTSECQNTSCSANQF 148 (525)
Q Consensus 69 ~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (525)
++++++..+-+++.+++..+..++++++|+++||+ |-|+++..+.++.++++++...+.. .
T Consensus 66 ~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~-G~r~v~~~~~~~sa~~t~l~P~aa~------------------~ 126 (466)
T KOG2532|consen 66 GEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKF-GARRVFFISGLISALLTLLTPLAAS------------------I 126 (466)
T ss_pred ceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHc-CchHHHHHHHHHHHHHHHHHHHHHH------------------h
Confidence 36889999999999999999999999999999999 9999999999999999999998865 3
Q ss_pred hHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhhHHHHhhhhHHHhhhhhhcccc-cchhhhHHH
Q 045562 149 QVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWYFGMCMGTFVTLTVLNYIQDN-LNWILGFGI 227 (525)
Q Consensus 149 ~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l~~~-~g~~~~f~~ 227 (525)
..+.+++.|+++|++.|...|+...+.+++.|++| |++..++.+.+..+|.+++.+++|++.+. +||+.+|++
T Consensus 127 ~~~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~E------rs~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~ 200 (466)
T KOG2532|consen 127 GFYLLLVLRFLQGLGQGVLFPAIGSILAKWAPPNE------RSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYV 200 (466)
T ss_pred cchhhHHHHHHhHHHHhHHHhhhhceeeeECCHHH------HHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHH
Confidence 34578999999999999999999999999999999 99999999999999999999999999998 999999999
Q ss_pred HHHHHHHHHHHHHhcccceeecCCCCCCchhhhHHHHHHHHHhccccCCchhhhHhhhhCCCCCCCccchhhhhHHHhhc
Q 045562 228 PCILMVIALVVFLLGTKIYRYSLKGEEKSPFLRIGQVFVTAVRNWRITPSAIALEEEARGTLPHQSSEQFKFLNKALLAS 307 (525)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (525)
.+...++..+++++...+.+.+++.- +. +..+.+ .+++.. ... +
T Consensus 201 ~g~~g~i~~~~w~~~~~d~P~~h~~i--s~--~El~~I---~~~k~~--------------~~~---------------~ 244 (466)
T KOG2532|consen 201 FGIVGLIWFILWFLFYSDSPSKHPNI--SE--KELKYI---EKGKSE--------------AHV---------------K 244 (466)
T ss_pred HHHHHHHHHHHHHHHhcCCcccCCCC--CH--HHHHHH---Hhcccc--------------ccc---------------C
Confidence 99887776666655554322222211 00 000000 000000 000 0
Q ss_pred CCCCCCCcccchhhHHHHHHHHHH-HHHHHHHHHHHHHHhhccchhhhhhhccccCcccccccChhhhhhhhhHHHHHHH
Q 045562 308 NGSKGYGKVCSVGEVEEAKALLRL-VPIWTTCLVYAIVFAQSSTFFTKQGVTMDRSVVADFQIPAASLQSFISLAIVLTI 386 (525)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 386 (525)
...+.||+...+ .+.++.. +..+.-...++....+.|+++.+ ..+.+. ...+.+.++.-+...+..
T Consensus 245 ~~~~vP~~~i~t-----s~~vwai~~~~f~~~~~~~~l~~y~PtY~~~-VL~f~v-------~~~G~~salP~l~~~~~k 311 (466)
T KOG2532|consen 245 KKPPVPYKAILT-----SPPVWAIWISAFGGNWGFYLLLTYLPTYLKE-VLGFDV-------RETGFLSALPFLAMAIVK 311 (466)
T ss_pred CCCCCCHHHHHc-----CHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH-HhCCCh-------hhhhHHHHHHHHHHHHHH
Confidence 002445543321 1222221 11222222333333333444332 222222 223445555555555556
Q ss_pred HhhhhhhhhhhhhhccCCCCCCchHHH--HHHHHHHHHHHHHHHHHHHHHHhhhhhcCCcCCCCCCccchHHHHHHHHHH
Q 045562 387 PIYDRIFVPIARTFTRKPAGITMLQRI--GTGMFLSAASMTGATLVEMKRLKTAEEYGLVDKPNVTIPMSVWWLIPQYAL 464 (525)
Q Consensus 387 ~l~~~~~~~l~~r~~~~~~~~~~~~~i--~ig~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~l 464 (525)
.+.+.+.|++..| . ...+..+++ .++....++.++.+++.. ..+. ++....+.
T Consensus 312 ~~~g~lsD~l~~~-~---ls~t~~rkifn~i~~~~~ai~l~~l~~~~--------------------~~~~-~~a~~~l~ 366 (466)
T KOG2532|consen 312 FVAGQLSDRLTFR-I---LSETTVRKIFNTIAFGGPAVFLLVLAFTS--------------------DEHR-LLAVILLT 366 (466)
T ss_pred HHHHHHHHHHhhc-c---CchHhHHHHHHhHHHHHHHHHHHeeeecC--------------------CCcc-hHHHHHHH
Confidence 6666644444333 1 113333444 445555566566666542 0112 22333333
Q ss_pred HHHHHHHHhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 045562 465 LGVSEAFTMVGLQEFFYDQVPTELRSVGLSLYLSIFGVGSFLSSFLISAIEN 516 (525)
Q Consensus 465 ~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~~~~~~i~~ 516 (525)
.+.+.......+...-....-+++-+..+|+.++...+..+++|.+++.+..
T Consensus 367 ~~~~~~g~~~~Gf~~~~~~~apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~ 418 (466)
T KOG2532|consen 367 IAIGLSGFNISGFYKNHQDIAPQHAGFVMGIINFVGALAGFIAPLLVGIIVT 418 (466)
T ss_pred HHHHHcccchhhhHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHheeeEeC
Confidence 3344444444444444444245669999999999999999999999998874
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.6e-17 Score=174.29 Aligned_cols=169 Identities=13% Similarity=0.104 Sum_probs=135.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHHHHHH
Q 045562 43 LFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVLGLG 122 (525)
Q Consensus 43 ~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~~~~~ 122 (525)
+.+....+...+......+.+ +.+++++|.|..+.+++.+.+.++..++.++.|++.||+ |||+++..+.++++++..
T Consensus 6 ~~~~~~f~~~G~~~~~~~~l~-~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~-G~r~~~~~g~~l~~~g~~ 83 (410)
T TIGR00885 6 ALITSLFALWGFANDITNPMV-PQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKL-SYKAGILLGLFLYALGAF 83 (410)
T ss_pred HHHHHHHHHHHHHHHhHHHHH-HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHHH
Confidence 333344444444443333445 456889999999999999999999999999999999999 999999999999999987
Q ss_pred HHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhhHHHHh
Q 045562 123 LLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWYFGMC 202 (525)
Q Consensus 123 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 202 (525)
++..+... .+++.+++.|++.|+|.|...+..++++.+..|+++ |++..+..+...+
T Consensus 84 l~~~~~~~-----------------~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~ 140 (410)
T TIGR00885 84 LFWPAAEI-----------------MNYTLFLVGLFILTAGLGFLETAANPYILVMGPEST------ATRRLNLAQSFNP 140 (410)
T ss_pred HHHHHHhh-----------------ccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhH------HHHHHHHHHHHHH
Confidence 76544210 126888999999999999999999999999999888 8889999999999
Q ss_pred hhhHHHhhhhhhccc--------------------------ccchhhhHHHHHHHHHHHH
Q 045562 203 MGTFVTLTVLNYIQD--------------------------NLNWILGFGIPCILMVIAL 236 (525)
Q Consensus 203 ~g~~~gp~~~~~l~~--------------------------~~g~~~~f~~~~~~~~~~~ 236 (525)
+|..+||.+++.+.. ..+||.+|++.+++.++..
T Consensus 141 lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~ 200 (410)
T TIGR00885 141 FGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVA 200 (410)
T ss_pred HHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999887632 2469999987776555443
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.5e-17 Score=169.75 Aligned_cols=169 Identities=12% Similarity=0.123 Sum_probs=134.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhcc----chH-HHHHHHHHHHHH
Q 045562 45 IIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFL----GRY-RAIIIASLIYVL 119 (525)
Q Consensus 45 ~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~----Grr-~~~~~~~~~~~~ 119 (525)
++..++.....+.....-+|.|++ +.|+|.+++|++...... .+..+++|+++||+. ||| +.+..+.++.++
T Consensus 4 ~~~l~~~~~~~~~~~~~~~~~~l~-~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l 80 (402)
T PRK11902 4 MLLLGFASGLPLALTSGTLQAWMT-VEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAA 80 (402)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHH
Confidence 455666777777777889999998 459999999998666554 589999999999982 555 578888888877
Q ss_pred HHHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhhHH
Q 045562 120 GLGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWYF 199 (525)
Q Consensus 120 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 199 (525)
+..++.+... ..+.+.+++..++.++..+...|...+++.|.+|+++ |+++.++...
T Consensus 81 ~~~~l~~~~~-----------------~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~------r~~~~~~~~~ 137 (402)
T PRK11902 81 SIAAMAFCPP-----------------HAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEE------RGAGAAVKVL 137 (402)
T ss_pred HHHHHHhcCc-----------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhh------hhHHHHHHHH
Confidence 7777666521 0125666666677788888889999999999999998 9999999999
Q ss_pred HHhhhhHHHhhhhhhcccc-cchhhhHHHHHHHHHHHHHHH
Q 045562 200 GMCMGTFVTLTVLNYIQDN-LNWILGFGIPCILMVIALVVF 239 (525)
Q Consensus 200 ~~~~g~~~gp~~~~~l~~~-~g~~~~f~~~~~~~~~~~~~~ 239 (525)
+..+|..+++.+++++.+. .|||..|++.++..++..+..
T Consensus 138 g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~~l~~ 178 (402)
T PRK11902 138 GYRLAMLVSGGLALWLADRVLGWGNTYLLMAGLMLAGALTT 178 (402)
T ss_pred HHHHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988885 599999998887665544433
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.4e-17 Score=171.91 Aligned_cols=416 Identities=14% Similarity=0.076 Sum_probs=250.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhh----ccchHHHHHHH-HH
Q 045562 41 SALFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADS----FLGRYRAIIIA-SL 115 (525)
Q Consensus 41 ~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~----~~Grr~~~~~~-~~ 115 (525)
++..+....+..++++-...++++.|+ +++|.+....+.+..+..+...+.+|+.|+++|| + ||||.++++ .+
T Consensus 5 ~li~~~~~~~Giq~~~~l~~~~l~~yl-~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~-GRRrp~il~g~~ 82 (477)
T TIGR01301 5 KLLRVASVAAGVQFGWALQLSLLTPYV-QELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRF-GRRRPFIAAGAA 82 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCC-CChHHHHHHHHH
Confidence 455566666667777777778888887 4899999999999999999999999999999995 7 999988875 55
Q ss_pred HHHHHHHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehh
Q 045562 116 IYVLGLGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFN 195 (525)
Q Consensus 116 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 195 (525)
..+++..+++.+.+......++ .+=.......+.++++..+..++.....+...++++|++|+++++ ++.+.+
T Consensus 83 ~~~~~l~ll~~~~~~~~~~~~~---~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~----~~~a~~ 155 (477)
T TIGR01301 83 LVAFAVILIGFAADIGHLFGDN---LDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARR----TRIANA 155 (477)
T ss_pred HHHHHHHHHHhCchhhhhcccc---ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHH----HHHHHH
Confidence 5666666666543211000000 000000111234445555566677777888899999999988621 367999
Q ss_pred hhHHHHhhhhHHHhhhhhhc--cccc-------------chhhhHHHHHHHHHHHHHHHHhcccceeecCCCCCCchhhh
Q 045562 196 WWYFGMCMGTFVTLTVLNYI--QDNL-------------NWILGFGIPCILMVIALVVFLLGTKIYRYSLKGEEKSPFLR 260 (525)
Q Consensus 196 ~~~~~~~~g~~~gp~~~~~l--~~~~-------------g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (525)
+.+.+.++|..+|+.++++. .+.+ +.+..|++.+++.+++.++.....||.+...+++ .+..+
T Consensus 156 ~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~--~~~~~ 233 (477)
T TIGR01301 156 YFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDD--FINSE 233 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCcccc--chhhh
Confidence 99999999999999999864 2222 6788999998888887777766666544321111 00000
Q ss_pred HHHHHHHHHhccccCCchhhhHhhhhCCCCCCCccchhhhhHHHhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHHHH
Q 045562 261 IGQVFVTAVRNWRITPSAIALEEEARGTLPHQSSEQFKFLNKALLASNGSKGYGKVCSVGEVEEAKALLRLVPIWTTCLV 340 (525)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 340 (525)
.+ +.++.+. ...+++..+....-.|.+.+.+.+.+..-.
T Consensus 234 -------------~~--------------~~~~~~~--------------~~~~~~i~~~~~~mP~~m~~l~~vqffsW~ 272 (477)
T TIGR01301 234 -------------AA--------------PPSKHGE--------------EAFFGELFGAFKYLPRPVWILLLVTCLNWI 272 (477)
T ss_pred -------------cc--------------cccccch--------------hhhHHHHHHHHHHCCHHHHHHHHHHHHHHH
Confidence 00 0000000 000111111112222444455555455555
Q ss_pred HHHHHhhccchhhhhhhcc-ccCcccccccChh-hhhhhhhHHHHHHHHhhhhhhhhhhhhhccCCCCCCchHHHHHHHH
Q 045562 341 YAIVFAQSSTFFTKQGVTM-DRSVVADFQIPAA-SLQSFISLAIVLTIPIYDRIFVPIARTFTRKPAGITMLQRIGTGMF 418 (525)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~i~~~~l~~~~~~~l~~r~~~~~~~~~~~~~i~ig~~ 418 (525)
.|..+..+.+.+.-+...- +.... ...+.+ -+.....+...+...+++.++.++.+|+++| ++.-.++.+
T Consensus 273 a~f~~~~y~T~~vg~~v~~~~~~~~--~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~~g~~------k~~~~~s~~ 344 (477)
T TIGR01301 273 AWFPFILFDTDWMGREVYGGSVNQG--AKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRGWGAG------KRLWGIVNI 344 (477)
T ss_pred HHHHHHHhccHHHHHHHcCCCCcch--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------hhHHHHHHH
Confidence 5555555555554432111 10000 000001 0111112222222235555556677776543 133477878
Q ss_pred HHHHHHHHHHHHHHHHHhhhhh---cCCcCCCCCCccch-HHHHHHHHHHHHHHHHHHhhhhHHHhhhccCc--hhHHHH
Q 045562 419 LSAASMTGATLVEMKRLKTAEE---YGLVDKPNVTIPMS-VWWLIPQYALLGVSEAFTMVGLQEFFYDQVPT--ELRSVG 492 (525)
Q Consensus 419 l~~i~~~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~-~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~--~~rg~~ 492 (525)
+.++++....++.....|..+. .+.+. | +.. .+.++..+.+.|+..+..+..-++++++..|+ +.+|..
T Consensus 345 ~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~-~----~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~ 419 (477)
T TIGR01301 345 ILAICLAATVLVTYVAKNSRYYDGDGESLP-P----PTGIKASALIVFAILGIPLAITYSIPFALASIRSSNLGAGQGLS 419 (477)
T ss_pred HHHHHHHHHHHHHhhhhccccccccccccC-c----chhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHccccCCCCcch
Confidence 8888887777654211110000 01110 0 122 46677788999999999999999999999995 455999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccCC
Q 045562 493 LSLYLSIFGVGSFLSSFLISAIENATGGD 521 (525)
Q Consensus 493 ~gi~~~~~~lg~~lg~~~~~~i~~~~~~~ 521 (525)
+|+.|++..+.+++.+...|.+.+..|++
T Consensus 420 mgilN~~I~lpQii~sl~~g~~~~~~g~~ 448 (477)
T TIGR01301 420 MGVLNLAIVIPQIIVSLGSGPWDQLFGGG 448 (477)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999988888753
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.7e-17 Score=174.43 Aligned_cols=364 Identities=11% Similarity=0.049 Sum_probs=216.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhh----ccch-HHHHHHHH
Q 045562 40 RSALFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADS----FLGR-YRAIIIAS 114 (525)
Q Consensus 40 ~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~----~~Gr-r~~~~~~~ 114 (525)
++.+.-.+..+..+.....+..+++.|+++.+|+|+..+|.+..+..+...+..|+.|+++|| + || |+.++.+.
T Consensus 9 ~~~~~yg~g~~~~~~~~~~~~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~-Grrrp~il~~~ 87 (444)
T PRK09669 9 KDKIGYGLGDTACNLVWQTVMLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRH-GQFRPYLLWFA 87 (444)
T ss_pred HHHHhhcchhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCC-CCcchhHHHHH
Confidence 344444456677777777778899999999999999999999999999999999999999999 5 66 56666677
Q ss_pred HHHHHHHHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccC-CCccccccccee
Q 045562 115 LIYVLGLGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDS-QHPLESKLKSSF 193 (525)
Q Consensus 115 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~-~~~~~~~~r~~~ 193 (525)
+..+++..++..... .+ .+.....+++..++.+.+......+..++.+|+.++ ++ |.+.
T Consensus 88 ~~~~i~~~l~f~~p~---~~-----------~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~e------R~~l 147 (444)
T PRK09669 88 IPFGVVCLLTFYTPD---FG-----------ATGKIIYACVTYILLSLVYTAINVPYCAMPGAITNDPRE------RHSL 147 (444)
T ss_pred HHHHHHHHHHHhCCC---CC-----------cchHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHH------HHHH
Confidence 777666655543321 10 012244555555566666666777788999999854 44 8888
Q ss_pred hhhhHHHHhhhhHHHhhhhhhccc-------ccchhhhHHHHHHHHHHHHHHHHhcccceeecCCCCCCchhhhHHHHHH
Q 045562 194 FNWWYFGMCMGTFVTLTVLNYIQD-------NLNWILGFGIPCILMVIALVVFLLGTKIYRYSLKGEEKSPFLRIGQVFV 266 (525)
Q Consensus 194 ~~~~~~~~~~g~~~gp~~~~~l~~-------~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (525)
.++.....++|..+++.+...+.. ..||+..+.+.+++.++..+..+...|+..+. +++ ++ .+..+.+.
T Consensus 148 ~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~~~~~~~~~e~~~~-~~~--~~-~~~~~~~~ 223 (444)
T PRK09669 148 QSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVLFFCCFFMTKERYTP-EVD--NS-SSVWKDLK 223 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHhCCeEEecCC-CCc--CC-CCHHHHHH
Confidence 888888888887777665443322 34677777766665555544444433322111 111 00 00000000
Q ss_pred HHHhccccCCchhhhHhhhhCCCCCCCccchhhhhHHHhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045562 267 TAVRNWRITPSAIALEEEARGTLPHQSSEQFKFLNKALLASNGSKGYGKVCSVGEVEEAKALLRLVPIWTTCLVYAIVFA 346 (525)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 346 (525)
.....|.++..+...+..........
T Consensus 224 ------------------------------------------------------~~~~n~~~~~l~~~~~~~~~~~~~~~ 249 (444)
T PRK09669 224 ------------------------------------------------------LLLGNSQWRIMFIFNVVLLTAVVTRG 249 (444)
T ss_pred ------------------------------------------------------HHhCCchHHHHHHHHHHHHHHHHHHh
Confidence 01111122222211111111111111
Q ss_pred hccchhhhhhhccccCcccccccChhhhhhhhhHHHHHHHHhhhhhhhhhhhhhccCCCCCCchHHHHHHHHHHHHHHHH
Q 045562 347 QSSTFFTKQGVTMDRSVVADFQIPAASLQSFISLAIVLTIPIYDRIFVPIARTFTRKPAGITMLQRIGTGMFLSAASMTG 426 (525)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~l~~r~~~~~~~~~~~~~i~ig~~l~~i~~~~ 426 (525)
....++..+ .++ .......+.....+..++..++.+ ++.||+++| +....+.++..+....
T Consensus 250 ~~~~y~~~~--~~~------~~~~~~~~~~~~~i~~ii~~~~~~----~l~~r~gk~-------~~~~~~~~~~~~~~~~ 310 (444)
T PRK09669 250 GATLYYVNY--VLL------RPDLATLFLVTGMIAGLFGALLSE----RLLGKFDRV-------RAFKWTIVAFVILSAL 310 (444)
T ss_pred hhhheeeee--ecC------CHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhChH-------HHHHHHHHHHHHHHHH
Confidence 111111111 111 100011122222233334444444 467776544 5555565554443332
Q ss_pred HHHHHHHHHhhhhhcCCcCCCCCCccchHHHHHHHHHHHHHHHHHHhhhhHHHhhhccC-------chhHHHHHHHHHHH
Q 045562 427 ATLVEMKRLKTAEEYGLVDKPNVTIPMSVWWLIPQYALLGVSEAFTMVGLQEFFYDQVP-------TELRSVGLSLYLSI 499 (525)
Q Consensus 427 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P-------~~~rg~~~gi~~~~ 499 (525)
..... +.+.+.+.+..++.+++.+...+..++++.+.+| ++..|...|++++.
T Consensus 311 ~~~~~--------------------~~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~ 370 (444)
T PRK09669 311 IFFIP--------------------PSNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFA 370 (444)
T ss_pred HHHhC--------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHH
Confidence 22221 2345556667788999999999999999999886 34467789999999
Q ss_pred HHHHHHHHHHHHHHhhhhccCC
Q 045562 500 FGVGSFLSSFLISAIENATGGD 521 (525)
Q Consensus 500 ~~lg~~lg~~~~~~i~~~~~~~ 521 (525)
..+|..+|+.+.|.+.+..|-+
T Consensus 371 ~klg~alg~~i~g~ll~~~Gy~ 392 (444)
T PRK09669 371 IKLGLAIGGAVVGWILAWVDYV 392 (444)
T ss_pred HHHHHHHHHHHHHHHHHHcCCC
Confidence 9999999999999999988764
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.6e-17 Score=162.61 Aligned_cols=361 Identities=12% Similarity=0.076 Sum_probs=215.1
Q ss_pred HHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhccC
Q 045562 54 FAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVLGLGLLTLSAVLLSG 133 (525)
Q Consensus 54 ~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~~~~~l~~~~~~~~~~ 133 (525)
+.+.++..+- .-..++.+.+..-.|.+-+.+++.+.+..+.+|.++||+ |||+++.+|.+..++...+.+.+.+
T Consensus 47 ~~~~~V~~F~-~a~~~~~~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~y-GRkpvll~c~~~va~s~ll~~~S~~---- 120 (451)
T KOG2615|consen 47 FVVFMVRDFN-IAIGEPDGASVFYAGFLGSSFSILQFISSPLWGCLSDRY-GRKPVLLACLIGVALSYLLWALSRN---- 120 (451)
T ss_pred HHHHhhHHHH-HhhCCcccccchhhhhHhhHHHHHHHHhhhhhhhhhhhh-CchHHHHHHHHHHHHHHHHHHHHHH----
Confidence 4444444333 233445556677889999999999999999999999999 9999999999999998888888765
Q ss_pred CCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhhHHHHhhhhHHHhhhhh
Q 045562 134 STSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWYFGMCMGTFVTLTVLN 213 (525)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~ 213 (525)
+..++++|++.|+..|-. ....++++|.+++++ |+.+++....+..+|.++||.++|
T Consensus 121 ----------------F~afv~aR~l~Gi~kgnl-~v~rAiisdV~sek~------r~l~ms~v~~a~~lGfilGPmIGg 177 (451)
T KOG2615|consen 121 ----------------FAAFVLARFLGGIFKGNL-SVIRAIISDVVSEKY------RPLGMSLVGTAFGLGFILGPMIGG 177 (451)
T ss_pred ----------------HHHHHHHHHhhhhccCch-HHHHHHHHhhcChhh------ccceeeeeehhhhcchhhcchhhh
Confidence 666777799999998875 567899999999998 999999999999999999999999
Q ss_pred hccc---ccchhhhHHH-HHHHHHHH---HHHHHhcccceee-cCCCCCCchhhhHHHHHHHHHhccccCCchhhhHhhh
Q 045562 214 YIQD---NLNWILGFGI-PCILMVIA---LVVFLLGTKIYRY-SLKGEEKSPFLRIGQVFVTAVRNWRITPSAIALEEEA 285 (525)
Q Consensus 214 ~l~~---~~g~~~~f~~-~~~~~~~~---~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (525)
++.. ..|- .+|.. +.+..+++ +..+.+..+|+-+ ++.+++.++.++....-
T Consensus 178 yla~f~~~~g~-~p~alP~~~v~i~a~~~v~~~~~~lpETL~~rk~~~~~~~~~~~~~~~-------------------- 236 (451)
T KOG2615|consen 178 YLAQFSSISGS-YPFALPCLLVFILAAGDVTFFPWFLPETLPLRKRNDEHSTLQEAADDR-------------------- 236 (451)
T ss_pred HHHhhHhhhcc-CchHHHHHHHHHHHHHHHHHHHHhCCccccchhhcccccchhhhhhhh--------------------
Confidence 9987 2332 22222 22222222 3333343443322 11111111111111000
Q ss_pred hCCCCCCCccchhhhhHHHhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhccccCccc
Q 045562 286 RGTLPHQSSEQFKFLNKALLASNGSKGYGKVCSVGEVEEAKALLRLVPIWTTCLVYAIVFAQSSTFFTKQGVTMDRSVVA 365 (525)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (525)
.+..+.++.+.... ....|.. +.+- .+......++.|.-....+......++. ++
T Consensus 237 ------~~~~~~~~~~~v~~---lrn~p~~----------~~i~----~~~i~~l~~~ly~~l~s~~~~t~~~l~~--~r 291 (451)
T KOG2615|consen 237 ------LALLKFARIFKVAA---LRNPPLL----------DFIS----VLRIFGLHYFLYLELFSGLENTVLFLTH--GR 291 (451)
T ss_pred ------hhhcchhhhhhhhh---hcCcccc----------chHH----HHHHHHHHHHHHHHHHHHHHhhHHHhhc--Cc
Confidence 00000111111110 0111111 1110 1111111122222221111111111110 11
Q ss_pred ccccChhhhhhhhhHHHHHHHHhhhhhhhhhhhhhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCcC
Q 045562 366 DFQIPAASLQSFISLAIVLTIPIYDRIFVPIARTFTRKPAGITMLQRIGTGMFLSAASMTGATLVEMKRLKTAEEYGLVD 445 (525)
Q Consensus 366 ~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~l~~r~~~~~~~~~~~~~i~ig~~l~~i~~~~~~~~~~~~~~~~~~~g~~~ 445 (525)
++..+....-+.....++ +.+++....|..+|.... ..-....++.++.=.++..+..
T Consensus 292 -fg~ss~~~G~vl~~tGl~-m~~~ql~~~~~l~~~~~~-----~~a~l~~~l~~~vP~~llls~~--------------- 349 (451)
T KOG2615|consen 292 -FGYSSMQQGKVLSTTGLL-MLVIQLALVPILPRYKGN-----IKAVLLFSLLLIVPAFLLLSLA--------------- 349 (451)
T ss_pred -cCCChhhheeeeehhhHH-HHHHHHhccccccccccc-----hhhHHHHHHHHHHHHHHHHhcc---------------
Confidence 333333322222222322 223333345566664321 1223344555554445555542
Q ss_pred CCCCCccchHHHHHHHHHHHHHHHHHHhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 045562 446 KPNVTIPMSVWWLIPQYALLGVSEAFTMVGLQEFFYDQVPTELRSVGLSLYLSIFGVGSFLSSFLISAIENAT 518 (525)
Q Consensus 446 ~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~~~~~~i~~~~ 518 (525)
.....+.....+.++..+...+.+..++.+..|.+.||...|+......++.++||.+.|.+..|.
T Consensus 350 -------~~~~~l~~~s~l~sf~~A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~Ws 415 (451)
T KOG2615|consen 350 -------RTPVVLYLGSTLKSFSTASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFSWS 415 (451)
T ss_pred -------ccchhhhHHHHHHHHHHHHhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEEEe
Confidence 234556777888899999999999999999999999999999999999999999999999888776
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.5e-17 Score=174.11 Aligned_cols=371 Identities=13% Similarity=0.068 Sum_probs=223.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhh----hccch-HHHHHHHHH
Q 045562 41 SALFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLAD----SFLGR-YRAIIIASL 115 (525)
Q Consensus 41 ~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD----~~~Gr-r~~~~~~~~ 115 (525)
+.+.-.+..+..++....+.++++.|+++.+|+++..+|.+..+.-+...+..|+.|+++| |+ || |+.+.++..
T Consensus 7 ~~~~yg~g~~~~~~~~~~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~-Grrrp~il~g~i 85 (473)
T PRK10429 7 TKLSYGFGAFGKDFAIGIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRW-GKFKPWILIGTL 85 (473)
T ss_pred HHHhhccchhHHhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCC-CCcchhHhhhhH
Confidence 3344456677778888888899999999999999999999999999999999999999999 66 76 667777777
Q ss_pred HHHHHHHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhcccc-CCCcccccccceeh
Q 045562 116 IYVLGLGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFD-SQHPLESKLKSSFF 194 (525)
Q Consensus 116 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~-~~~~~~~~~r~~~~ 194 (525)
..+++..++..... .. .+.....+++..++..++......+..++.+|+.+ +++ |.+..
T Consensus 86 ~~~i~~~llf~~p~---~~-----------~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~e------R~~l~ 145 (473)
T PRK10429 86 ANSVVLFLLFSAHL---FE-----------GTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKRE------REQLV 145 (473)
T ss_pred HHHHHHHHHHcCCC---CC-----------ccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHH------HHHHH
Confidence 77777666643321 10 01223445555556677777788888999999995 555 89988
Q ss_pred hhhHHHHhhhhHHHhhhhhhccc-------ccchhhhHHHHHHHHHHHHHHHHhcccceeecCCCCCCchhhhHHHHHHH
Q 045562 195 NWWYFGMCMGTFVTLTVLNYIQD-------NLNWILGFGIPCILMVIALVVFLLGTKIYRYSLKGEEKSPFLRIGQVFVT 267 (525)
Q Consensus 195 ~~~~~~~~~g~~~gp~~~~~l~~-------~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (525)
++.....++|+.+.+.+...+.+ ..+|+....+.+++.+++.+..+...||.... ++. ++.
T Consensus 146 ~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~e~~~~-~~~--~~~--------- 213 (473)
T PRK10429 146 PYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFIVSTIITLRNVHEVYSS-DNQ--VSA--------- 213 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHcCceecCCc-ccc--ccc---------
Confidence 88777777776665554433211 23566655555555554444444433332110 000 000
Q ss_pred HHhccccCCchhhhHhhhhCCCCCCCccchhhhhHHHhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 045562 268 AVRNWRITPSAIALEEEARGTLPHQSSEQFKFLNKALLASNGSKGYGKVCSVGEVEEAKALLRLVPIWTTCLVYAIVFAQ 347 (525)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 347 (525)
++ ++.++++..+...++ |.++..+...+...........
T Consensus 214 -------------------------~~---------------~~~~~~~~~~~~~~n-~~~~~ll~~~~~~~~~~~~~~~ 252 (473)
T PRK10429 214 -------------------------EG---------------SHLTLKDIVALIYKN-DQLSCLLGMALAYNIASNIING 252 (473)
T ss_pred -------------------------cc---------------cCCCHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHhh
Confidence 00 000111110001122 3333332222222222222222
Q ss_pred ccchhhhhhhccccCcccccccChhhhhhhhhHHHHHHHHhhhhhhhhhhhhhccCCCCCCchHHHHHHHHHHHHHHHHH
Q 045562 348 SSTFFTKQGVTMDRSVVADFQIPAASLQSFISLAIVLTIPIYDRIFVPIARTFTRKPAGITMLQRIGTGMFLSAASMTGA 427 (525)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~l~~r~~~~~~~~~~~~~i~ig~~l~~i~~~~~ 427 (525)
...++..+. .. .....+.+.....+..++..++.++ +.||+++| +.+.++.++..++.+..
T Consensus 253 ~~~y~~~y~--~~------~~~~~~~~~~~~~i~~ii~~~~~~~----l~~r~gkk-------~~~~~~~~~~~~~~~~~ 313 (473)
T PRK10429 253 FAIYYFTYV--IG------DADLFPYYLSYAGAANLVTLILFPR----LVKSLSRR-------ILWAGASIFPVLSCGVL 313 (473)
T ss_pred heeeEEEEE--CC------CHHHHHHHHHHHHHHHHHHHHHHHH----HHHHcCcH-------HHHHHHHHHHHHHHHHH
Confidence 222222111 11 1111122334444555566666554 67776554 66666666655555444
Q ss_pred HHHHHHHHhhhhhcCCcCCCCCCccchHHHHHHHHHHHHHHHHHHhhhhHHHhhhccC-------chhHHHHHHHHHHHH
Q 045562 428 TLVEMKRLKTAEEYGLVDKPNVTIPMSVWWLIPQYALLGVSEAFTMVGLQEFFYDQVP-------TELRSVGLSLYLSIF 500 (525)
Q Consensus 428 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P-------~~~rg~~~gi~~~~~ 500 (525)
...... . +.+.+.+++..++.+++.+...+...++..+.+| ++..|...|.+.+..
T Consensus 314 ~~~~~~-----------~------~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~ 376 (473)
T PRK10429 314 LLMGLA-----------A------PHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVV 376 (473)
T ss_pred HHHhcc-----------C------chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHH
Confidence 321000 0 1245556666778899999999999999999977 445677999999999
Q ss_pred HHHHHHHHHHHHHhhhhccCC
Q 045562 501 GVGSFLSSFLISAIENATGGD 521 (525)
Q Consensus 501 ~lg~~lg~~~~~~i~~~~~~~ 521 (525)
.+|..+++.+.|.+.+..|-+
T Consensus 377 K~~~al~~~i~g~~l~~~Gy~ 397 (473)
T PRK10429 377 KGGSAFAAFFIGVVLGLIGYV 397 (473)
T ss_pred HHHHHHHHHHHHHHHHHcCCC
Confidence 999999999999999888764
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.5e-16 Score=162.11 Aligned_cols=361 Identities=12% Similarity=-0.003 Sum_probs=207.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHH--HHHHHHHHHhhhhhH-HHHhhhccchHHHHHHHHHHH-
Q 045562 42 ALFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAEN--VNAWSGVASLLPLFG-AFLADSFLGRYRAIIIASLIY- 117 (525)
Q Consensus 42 ~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~--~~~~~~~~~~~~~~~-G~lsD~~~Grr~~~~~~~~~~- 117 (525)
...+...++.+.+.+....+.+|.|++ +.|.|..+.|.. .........+..|+. ++.+||+ ||||..++...+.
T Consensus 3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~-~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~-g~r~~~i~~~~~~~ 80 (390)
T TIGR02718 3 VITLGLLYLSQGIPIGLAMDALPTLLR-EDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRL-GRRRSWVLPMQCLV 80 (390)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccC-CcchhHHHHHHHHH
Confidence 455667788888888888899999997 569999999987 355567776666666 6689998 9998876655332
Q ss_pred HHHHHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhh
Q 045562 118 VLGLGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWW 197 (525)
Q Consensus 118 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 197 (525)
......+.... +.. .....++....+.++..+...+...++..|..++++ ++...+..
T Consensus 81 ~~~~~~~~~~~--~~~--------------~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~------~~~~~~~~ 138 (390)
T TIGR02718 81 SACLASLALVG--PDV--------------AGAGWAVGLLACASLASATQDIATDGMAAEHFNGRT------LAKGNAVQ 138 (390)
T ss_pred HHHHHHHHcCC--cch--------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhh------hhHHHHHH
Confidence 22222222111 000 002233334444556666666777777777777666 67777777
Q ss_pred HHHHhhhhHHHhhhhhhcccccchhhhHHHHHHHHHHHHHHHHhcccceeecCCCCCCchhhhHHHHHHHHHhccccCCc
Q 045562 198 YFGMCMGTFVTLTVLNYIQDNLNWILGFGIPCILMVIALVVFLLGTKIYRYSLKGEEKSPFLRIGQVFVTAVRNWRITPS 277 (525)
Q Consensus 198 ~~~~~~g~~~gp~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (525)
..+..+|..+|+...+++.+++||+.+|++.+++.++..+..+..+++.+++ +++ +..+ .+.+.
T Consensus 139 ~~g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~~~~~~~~~~-~~~---~~~~-~~~~~----------- 202 (390)
T TIGR02718 139 IAGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVCVLWLKDRAVAS-PEA---PLAR-RASLF----------- 202 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCCCcCc-ccc---chhh-HHHHH-----------
Confidence 7777899999998888999999999999998877766555544443321110 010 0000 00000
Q ss_pred hhhhHhhhhCCCCCCCccchhhhhHHHhhcCCCCCCCcccchhhHHHHHHHHHHHHH-HHHHHHHHHHHhhccchhhhhh
Q 045562 278 AIALEEEARGTLPHQSSEQFKFLNKALLASNGSKGYGKVCSVGEVEEAKALLRLVPI-WTTCLVYAIVFAQSSTFFTKQG 356 (525)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 356 (525)
+..+++.++..+.. ++........+. +...+..
T Consensus 203 -------------------------------------------~~l~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~l~-- 236 (390)
T TIGR02718 203 -------------------------------------------RFFRRPLAWSLLALALLSAMTAVSGFG-LSKLYLV-- 236 (390)
T ss_pred -------------------------------------------HHHcCcCHHHHHHHHHHHHHHHHHHHH-HhhHHHH--
Confidence 00011111111111 111111222222 2111111
Q ss_pred hccccCcccccccChhhhhhhhhHHHHHHHHhhhhhhhhhhhhhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045562 357 VTMDRSVVADFQIPAASLQSFISLAIVLTIPIYDRIFVPIARTFTRKPAGITMLQRIGTGMFLSAASMTGATLVEMKRLK 436 (525)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~l~~r~~~~~~~~~~~~~i~ig~~l~~i~~~~~~~~~~~~~~ 436 (525)
+ .+.+++...............+...+..++.||+++| +.+.++.++.++............
T Consensus 237 ---~------~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~-------~~l~~~~~~~~~~~~~~~~~~~~~-- 298 (390)
T TIGR02718 237 ---D------AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLW-------RTFILGVGLAGSLALLWFAQAAFW-- 298 (390)
T ss_pred ---h------cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHH-------HHHHHHHHHHHHHHHHHHHHHHcc--
Confidence 1 1223333333332222222333333344577775543 555556555433322222111000
Q ss_pred hhhhcCCcCCCCCCccchHHHHHHHHHHHHHHHHHHhhhhHHHhhhccCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 045562 437 TAEEYGLVDKPNVTIPMSVWWLIPQYALLGVSEAFTMVGLQEFFYDQVPT-ELRSVGLSLYLSIFGVGSFLSSFLISAIE 515 (525)
Q Consensus 437 ~~~~~g~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~-~~rg~~~gi~~~~~~lg~~lg~~~~~~i~ 515 (525)
...+.+.+....++.+++.+...+..+....+..++ +.+|+.+++.+....+|..+++.+.|.+.
T Consensus 299 --------------~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~ 364 (390)
T TIGR02718 299 --------------LAPGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLT 364 (390)
T ss_pred --------------cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 011233333444555666777888888888888876 89999999999999999999999999999
Q ss_pred hhccC
Q 045562 516 NATGG 520 (525)
Q Consensus 516 ~~~~~ 520 (525)
+..|-
T Consensus 365 ~~~G~ 369 (390)
T TIGR02718 365 DRFGY 369 (390)
T ss_pred HHHcc
Confidence 98763
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.78 E-value=4e-17 Score=179.68 Aligned_cols=201 Identities=17% Similarity=0.219 Sum_probs=153.6
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHH
Q 045562 38 GWRSALFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIY 117 (525)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~ 117 (525)
.++.+++.+...++......++.......++++++++..+.|++.+.+.++..++.++.|+++||+ |||+.+.++.+++
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~-~r~~~i~~g~ll~ 108 (633)
T TIGR00805 30 KIKVFSLLLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKL-HRPIVIGIGCAIM 108 (633)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhccc-CcceEEEecHHHH
Confidence 344444444444555555556666666778889999999999999999999999999999999998 9999999999999
Q ss_pred HHHHHHHHHhhhhcc----------------CCCCccCC------------CCcCCCc---hhHHHHHHHHHHHHhcccc
Q 045562 118 VLGLGLLTLSAVLLS----------------GSTSECQN------------TSCSANQ---FQVIFFFFSLYLIALGQGG 166 (525)
Q Consensus 118 ~~~~~l~~~~~~~~~----------------~~~~~~~~------------~~~~~~~---~~~~~~~~~~~l~g~g~g~ 166 (525)
+++.+++++++.... .....|.. ..|.+.+ ..+..++++|+++|+|.+.
T Consensus 109 ~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~ 188 (633)
T TIGR00805 109 GLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATP 188 (633)
T ss_pred HHHHHHHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCc
Confidence 999999988752110 00112211 1233322 2456788999999999999
Q ss_pred CccchhhhhhccccCCCcccccccceehhhhHHHHhhhhHHHhhhhhhccccc----------------------chhhh
Q 045562 167 HKPCVQAFGADQFDSQHPLESKLKSSFFNWWYFGMCMGTFVTLTVLNYIQDNL----------------------NWILG 224 (525)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l~~~~----------------------g~~~~ 224 (525)
..+...+++.|.+|+++ |+.++++++.+..+|..+|+++++++.+.+ +|+..
T Consensus 189 ~~~~~~~~i~d~~~~~~------~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~ 262 (633)
T TIGR00805 189 IFPLGISYIDDFAKSKN------SPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIG 262 (633)
T ss_pred chhcCchhhhccCCccc------cHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHH
Confidence 99999999999999999 999999999999999999999999876532 27888
Q ss_pred HHHHHHHHHHHHHHHHhcccc
Q 045562 225 FGIPCILMVIALVVFLLGTKI 245 (525)
Q Consensus 225 f~~~~~~~~~~~~~~~~~~~~ 245 (525)
|++.+++.++..+.++..+++
T Consensus 263 Fli~g~l~~l~~v~l~~~p~~ 283 (633)
T TIGR00805 263 FLICGGVALLTSIPFFFFPKA 283 (633)
T ss_pred HHHHHHHHHHHHHHHHhCccc
Confidence 888776666655445554443
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.2e-16 Score=163.89 Aligned_cols=362 Identities=14% Similarity=0.074 Sum_probs=220.9
Q ss_pred HHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHH
Q 045562 79 AENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVLGLGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLY 158 (525)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (525)
+.+++++.++.+++.+++|+++||+ |||+.+.++.++..++.+++.++... .+..+++++|+
T Consensus 63 S~~vs~f~iG~~~Gs~~~~~la~~~-GRK~~l~~~~~l~~~~~~~~~~s~~~-----------------~~~e~li~GR~ 124 (485)
T KOG0569|consen 63 SLIVSIFFIGGMIGSFSSGLLADRF-GRKNALLLSNLLAVLAALLMGLSKSA-----------------PSFEMLILGRL 124 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh-cchHHHHHHHHHHHHHHHHHHHHHHh-----------------hhHHHHHHHHH
Confidence 4667888999999999999999999 99999999999888888887776542 23689999999
Q ss_pred HHHhccccCccchhhhhhccccCCCcccccccceehhhhHHHHhhhhHHHhhhhh--hcccccchhhhHHHHHHHHHHHH
Q 045562 159 LIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWYFGMCMGTFVTLTVLN--YIQDNLNWILGFGIPCILMVIAL 236 (525)
Q Consensus 159 l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~--~l~~~~g~~~~f~~~~~~~~~~~ 236 (525)
+.|+..|......+-++.|..|++- ||..-.....+.++|..+|..++. .+.+.-.|++.+.+..+..++.+
T Consensus 125 i~Gl~~gl~~~~~pmyl~E~sP~~~------RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l 198 (485)
T KOG0569|consen 125 IVGLACGLSTGLVPMYLTEISPKNL------RGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQL 198 (485)
T ss_pred HHHHHhHHHHHHHHHHHhhcChhhh------ccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999 999999999999999999977774 45666679999999888888777
Q ss_pred HHHHhcccceeecCCCCCCchhhhHHHHHHHHHhccccCCchhhh-HhhhhCCCCCCCccchhhhhHHHhhcCCCCCCCc
Q 045562 237 VVFLLGTKIYRYSLKGEEKSPFLRIGQVFVTAVRNWRITPSAIAL-EEEARGTLPHQSSEQFKFLNKALLASNGSKGYGK 315 (525)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (525)
+.+.+.++..+.---++ +...+..+. +.-.+++......+++ .++.+.. ...+....+++
T Consensus 199 ~~l~~~PESPk~Ll~~k--~~~~~A~~s-l~~y~G~~~~~~~~e~~~~e~~~~----------------~~~~~~~~sl~ 259 (485)
T KOG0569|consen 199 ALLPFLPESPKYLLIKK--GDEEEARKA-LKFYRGKEDVEAEIEEMLREIEEE----------------ELEKKKQISLR 259 (485)
T ss_pred HHHhcCCCCcchHHHHc--CCHHHHHHH-HHHHhCCCcchhHHHHHHHHHHHh----------------ccccccCCcHH
Confidence 77777665333211111 111111111 1112222211111111 1110000 00001122222
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhh--hccccCcccccccChhh---hhhhhhHHHHHHHHhhh
Q 045562 316 VCSVGEVEEAKALLRLVPIWTTCLVYAIVFAQSSTFFTKQG--VTMDRSVVADFQIPAAS---LQSFISLAIVLTIPIYD 390 (525)
Q Consensus 316 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~---~~~~~~~~~i~~~~l~~ 390 (525)
+..+ ....|+.+...+.+ ...+|+.+...... ..+-.. .+++... .......+.++...+
T Consensus 260 ~~~~-~~~lR~~~~i~~~v--------~~~qq~sGi~ai~~Yst~i~~~----aG~~~~~a~~an~~~g~v~~~~t~~-- 324 (485)
T KOG0569|consen 260 QLLK-NPTLRRPLLIGIVV--------SFAQQFSGINAIFFYSTSIFKT----AGFTPEEAQYANLGIGIVNLLSTLV-- 324 (485)
T ss_pred HHhc-CcchhHHHHHHHHH--------HHHHHhcCcceeHHHHHHHHHH----cCCCHHHHHHHHHHHHHHHHHHHHH--
Confidence 2211 12223332222211 11223322111111 101111 1222222 222222222222222
Q ss_pred hhhhhhhhhhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCcCCCCCCccchHHHHHHHHHHHHHHHH
Q 045562 391 RIFVPIARTFTRKPAGITMLQRIGTGMFLSAASMTGATLVEMKRLKTAEEYGLVDKPNVTIPMSVWWLIPQYALLGVSEA 470 (525)
Q Consensus 391 ~~~~~l~~r~~~~~~~~~~~~~i~ig~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~l~g~g~~ 470 (525)
...+.||+||| +.+.++..++.+..+++........... +.-.+..+...+++.+...
T Consensus 325 --~~~lid~~gRR-------pLll~~~~~~~~~~~~~~~~~~l~~~~~-------------~~~~y~~i~~~~~~~~~f~ 382 (485)
T KOG0569|consen 325 --SPFLIDRLGRR-------PLLLISLSLMAVALLLMSIALFLSNSFG-------------SWLSYLCIAAIFLFIISFA 382 (485)
T ss_pred --HHHHHHhcCCc-------HHHHHHHHHHHHHHHHHHHHHHHHHHhh-------------hHHHHHHHHHHHHHHHhhh
Confidence 22378898887 7788888888888777766543321100 0011122334444444333
Q ss_pred -HHhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC
Q 045562 471 -FTMVGLQEFFYDQVPTELRSVGLSLYLSIFGVGSFLSSFLISAIENATGG 520 (525)
Q Consensus 471 -~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~~~~~~i~~~~~~ 520 (525)
...|..+-+.+|.+|.+.|+.++++..+.+.+.+++-......+.+..|.
T Consensus 383 ~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~ 433 (485)
T KOG0569|consen 383 IGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP 433 (485)
T ss_pred cCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 35888899999999999999999999999999999999999999888764
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.76 E-value=9.9e-16 Score=164.11 Aligned_cols=374 Identities=16% Similarity=0.102 Sum_probs=213.4
Q ss_pred HHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhccCCCCccCCCC
Q 045562 63 LITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVLGLGLLTLSAVLLSGSTSECQNTS 142 (525)
Q Consensus 63 l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 142 (525)
...++.+++|-+ ....|+...+.+...+..++.|.++|.+ |||..++.+.++..+|.+.++.+.+
T Consensus 66 ~l~~I~~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlf-GRr~~~i~g~~l~vvG~Iv~atA~~------------- 130 (599)
T PF06609_consen 66 ILPYINADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLF-GRRYFFIIGSLLGVVGSIVCATAQN------------- 130 (599)
T ss_pred HHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHh-cchHHHHHHHHHHHhHHHHhhcCCc-------------
Confidence 345788889876 4556788899999999999999999999 9999999999999999999998865
Q ss_pred cCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhhHHHHhhhhHHHhhhhhhcccccchh
Q 045562 143 CSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWYFGMCMGTFVTLTVLNYIQDNLNWI 222 (525)
Q Consensus 143 ~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l~~~~g~~ 222 (525)
...++++..+.|+|.|... .....++|..|.+. |..+..+...........+|.++..+..+.+||
T Consensus 131 -------~~~~iag~~l~GvgaG~~~-~~~~~isEl~p~k~------R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WR 196 (599)
T PF06609_consen 131 -------MNTFIAGMVLYGVGAGVQE-LAALAISELVPNKW------RGLGLAIASIPFIITTWISPLIAQLFAAHSGWR 196 (599)
T ss_pred -------HHHHHHHHHHHHHhhHHHH-HHHHHHHHhcccch------hhhHhHHHHHHHHhhhcccHHHHHHhccCCCcc
Confidence 7889999999999977654 45666899999877 877776666555555556777776666667899
Q ss_pred hhHHHHHHHHHHHHHHHH--hcccceeecCCCCCCchhh-----hHHHHHHHHHhccccCCchhhhHhhhhCCCCCCCcc
Q 045562 223 LGFGIPCILMVIALVVFL--LGTKIYRYSLKGEEKSPFL-----RIGQVFVTAVRNWRITPSAIALEEEARGTLPHQSSE 295 (525)
Q Consensus 223 ~~f~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (525)
|.|++..+...++++..+ +.+++.+..+.++ .+..+ |....++..........+ +.. .|. .
T Consensus 197 w~~~~~~i~~~i~~vl~~~fY~PP~~~~~~~~~-~s~~~~l~~lD~IG~~L~~~Gl~LfLlg----l~w-gG~------~ 264 (599)
T PF06609_consen 197 WIFYIFIIWSGIALVLIFFFYFPPPRAQLHGRK-LSKREQLKELDWIGIFLFIAGLALFLLG----LSW-GGY------P 264 (599)
T ss_pred hHHHHHHHHHHHHHHHHHHHhCCCchhhhcccc-CcHHHHHHHhhHHHHHHHHHHHHHHHHH----Hhc-cCC------C
Confidence 999999887666554433 3222222111111 01111 111111111000000000 000 010 0
Q ss_pred chhhhhHHHhh----------c----C---CCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhc
Q 045562 296 QFKFLNKALLA----------S----N---GSKGYGKVCSVGEVEEAKALLRLVPIWTTCLVYAIVFAQSSTFFTKQGVT 358 (525)
Q Consensus 296 ~~~~~~~~~~~----------~----~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (525)
...|.+..-+. . + ..+.|.- ..+..+++|.+... +++..+....|......++.+...
T Consensus 265 ~~~W~Sa~VIa~lviG~~~Lv~F~~wE~~~~~~~Pl~--P~~Lf~~~r~~~~~---lvi~fi~G~~~~s~~~l~p~~~~~ 339 (599)
T PF06609_consen 265 YYPWKSAHVIAPLVIGFVLLVAFVVWEWFGAPKDPLF--PHRLFKDRRGFAAL---LVISFISGMNFFSVNILWPQQVVN 339 (599)
T ss_pred CCCCCCccchhhHHHHHHHHHHHHHhhhhccCCCCcC--CHHHhccchHHHHH---HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 01121100000 0 0 1122211 00112222222221 122222233333333444443322
Q ss_pred cc-cCcccccccChhhhhhhhhHHHHHHHHhhhhhhhhhhhhhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 045562 359 MD-RSVVADFQIPAASLQSFISLAIVLTIPIYDRIFVPIARTFTRKPAGITMLQRIGTGMFLSAASMTGATLVEMKRLKT 437 (525)
Q Consensus 359 ~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~l~~r~~~~~~~~~~~~~i~ig~~l~~i~~~~~~~~~~~~~~~ 437 (525)
+- ..... . ....++.....+...+.+.+.+. +.++.+ +.+..+.++.+++.+....++...
T Consensus 340 vf~~d~~~-~-~~~~~~s~~~~fg~~~g~~i~g~----l~~~ir------~~Kw~li~~~~~~ta~~Gama~~~------ 401 (599)
T PF06609_consen 340 VFGSDPIS-I-TEIGWISSPVGFGSCAGAVILGL----LFSKIR------HIKWQLIFGSVLMTAFCGAMAAVR------ 401 (599)
T ss_pred hccCCCcc-c-ceeehhhhhHHHHHHHHHHHHHH----HHHHcc------chhHHHHHHHHHHHHHHHHHHHcc------
Confidence 11 00000 0 01223333344444444433333 344432 122445667766666555555431
Q ss_pred hhhcCCcCCCCCCccchHHHHHHHHHHHHHHHHHHhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045562 438 AEEYGLVDKPNVTIPMSVWWLIPQYALLGVSEAFTMVGLQEFFYDQVPTELRSVGLSLYLSIFGVGSFLSSFLISAI 514 (525)
Q Consensus 438 ~~~~g~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~~~~~~i 514 (525)
+.+....+...++.+++.+.........++-.+|++..|+++|+....+.+|+.+|..+...+
T Consensus 402 --------------~~n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~~I 464 (599)
T PF06609_consen 402 --------------PDNKNAAIAFLVLAGFGIGGILVPAIVIAQLIVPDEDIGTATGLTGSIRSIGGSIGYAIYNAI 464 (599)
T ss_pred --------------CCCcchHHHHHHHHHHhHHHHHHHHHHeeEeeeCchHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 112223345567888888888888888888999999999999999999999999998876543
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.76 E-value=7.5e-17 Score=170.21 Aligned_cols=361 Identities=13% Similarity=0.138 Sum_probs=239.6
Q ss_pred HHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhh----hccch-HHHHHHHHHHHHHHHHH
Q 045562 49 EMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLAD----SFLGR-YRAIIIASLIYVLGLGL 123 (525)
Q Consensus 49 ~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD----~~~Gr-r~~~~~~~~~~~~~~~l 123 (525)
.+..++.......++..|+++.+|+++...+.+..+.-+..++..|+.|+++| |+ || |+.+.+|.+...++.++
T Consensus 10 ~~~~~~~~~~~~~~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~-Grrrp~~l~g~i~~~~~~~l 88 (428)
T PF13347_consen 10 DLGYNMIWSLLSSYLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRW-GRRRPWILIGAILLALSFFL 88 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccc-cccceEeehhhHHHHHHHHH
Confidence 45666666667778999999999999999999999999999999999999999 77 65 55555777888888777
Q ss_pred HHHh-hhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhhHHHHh
Q 045562 124 LTLS-AVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWYFGMC 202 (525)
Q Consensus 124 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 202 (525)
+... ....+. +.....+++..++..++......+..++.+|+.+++++ |.+..++......
T Consensus 89 lf~~~p~~~~~-------------~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~-----R~~l~~~~~~~~~ 150 (428)
T PF13347_consen 89 LFSPPPAGLSF-------------TAKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDE-----RTRLSSWRMIFSM 150 (428)
T ss_pred hhccccchhhh-------------hhHHHHHHHHHHHHHHhhhhccCchhhcCccccccHhh-----hhhHHHHHHHHHH
Confidence 7754 210110 01234456666677888888889999999999986431 8999999888888
Q ss_pred hhhHHHhhhhhhccccc-------chhhhHHHHHHHHHHHHHHHHhcccceeecCCCCCCchhhhHHHHHHHHHhccccC
Q 045562 203 MGTFVTLTVLNYIQDNL-------NWILGFGIPCILMVIALVVFLLGTKIYRYSLKGEEKSPFLRIGQVFVTAVRNWRIT 275 (525)
Q Consensus 203 ~g~~~gp~~~~~l~~~~-------g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (525)
+|..+...+.+.+.+.+ +|+....+.+++.++..++.....||.+...+++ ++
T Consensus 151 ~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke~~~~~~~~--~~------------------ 210 (428)
T PF13347_consen 151 IGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFFLITFFFVKERSVEVTEQ--EK------------------ 210 (428)
T ss_pred HHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHhhhhhheeeecccccccc--cc------------------
Confidence 88865555555443322 5888777777666666666655555411111111 00
Q ss_pred CchhhhHhhhhCCCCCCCccchhhhhHHHhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhh
Q 045562 276 PSAIALEEEARGTLPHQSSEQFKFLNKALLASNGSKGYGKVCSVGEVEEAKALLRLVPIWTTCLVYAIVFAQSSTFFTKQ 355 (525)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (525)
+.++++..++..++ |.+...+...+.....+........++..+
T Consensus 211 -----------------------------------~~~~~~~~~~~~~n-r~~~~l~~~~~~~~~~~~~~~~~~~y~~~~ 254 (428)
T PF13347_consen 211 -----------------------------------KISLRDSLRSLFRN-RPFRILLLAFFLQWLAFALMNTFLPYYFTY 254 (428)
T ss_pred -----------------------------------ccccccchhhhccc-chHHHHHHHHHHHHhhhhhhhhHHHHHHHH
Confidence 00111111111122 223332222222222222222222223222
Q ss_pred hhccccCcccccccChhhhhhhhhHHHHHHHHhhhhhhhhhhhhhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045562 356 GVTMDRSVVADFQIPAASLQSFISLAIVLTIPIYDRIFVPIARTFTRKPAGITMLQRIGTGMFLSAASMTGATLVEMKRL 435 (525)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~l~~r~~~~~~~~~~~~~i~ig~~l~~i~~~~~~~~~~~~~ 435 (525)
....+ ...+.+.....+..++..|+..+ +.||+++| +.+..+.++.+++.++..+..
T Consensus 255 vl~~~--------~~~~~~~~~~~~~~~v~~~~~~~----l~~r~gk~-------~~~~~~~~~~~~~~~~~~~~~---- 311 (428)
T PF13347_consen 255 VLGNE--------GLISIFMLIFFVASIVGSPLWGR----LSKRFGKK-------KVYIIGLLLAALGFLLLFFLG---- 311 (428)
T ss_pred HhcCc--------hhhHHHHHHHHHHHHHHHHHHHH----HHHHccce-------eehhhhHHHHHHHHHHHHHHH----
Confidence 21111 11233444445556666666554 77886665 678888888888888877763
Q ss_pred hhhhhcCCcCCCCCCccchHHHHHHHHHHHHHHHHHHhhhhHHHhhhccCc-------hhHHHHHHHHHHHHHHHHHHHH
Q 045562 436 KTAEEYGLVDKPNVTIPMSVWWLIPQYALLGVSEAFTMVGLQEFFYDQVPT-------ELRSVGLSLYLSIFGVGSFLSS 508 (525)
Q Consensus 436 ~~~~~~g~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~-------~~rg~~~gi~~~~~~lg~~lg~ 508 (525)
+.+.+++.+..++.+++.+..++..+++..|..+. +..|...|++++...++..+++
T Consensus 312 ----------------~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~ 375 (428)
T PF13347_consen 312 ----------------PGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAG 375 (428)
T ss_pred ----------------hhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHH
Confidence 24778888899999999999999999999998874 4579999999999999999999
Q ss_pred HHHHHhhhhccCCCC
Q 045562 509 FLISAIENATGGDGR 523 (525)
Q Consensus 509 ~~~~~i~~~~~~~g~ 523 (525)
.+.+.+.+..|-+++
T Consensus 376 ~i~g~~l~~~Gy~~~ 390 (428)
T PF13347_consen 376 AIVGLLLALVGYDAN 390 (428)
T ss_pred HHHHHHHHHhCcCCC
Confidence 999999998887665
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=9.5e-16 Score=162.77 Aligned_cols=368 Identities=13% Similarity=0.096 Sum_probs=206.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhc---cchHH-HHHHHHHH
Q 045562 41 SALFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSF---LGRYR-AIIIASLI 116 (525)
Q Consensus 41 ~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~---~Grr~-~~~~~~~~ 116 (525)
..+.-....+..+..+..+.++++.|+++.+|++..++|.+.....+...+..++.|+++||. +|||| .+.++.+.
T Consensus 9 ~~~~yg~g~~~~~~~~~~~~~~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~ 88 (448)
T PRK09848 9 TIVGYSLGDVANNFAFAMGALFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAP 88 (448)
T ss_pred HHHhhccchHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHH
Confidence 344444567777888877888999999999999999999999999999999999999999995 25565 44556555
Q ss_pred HHHHHHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhh
Q 045562 117 YVLGLGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNW 196 (525)
Q Consensus 117 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 196 (525)
..+...++.......+. +......+....+.+++.+...++..++..++.++.++ |.+..++
T Consensus 89 ~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~-----r~~~~~~ 150 (448)
T PRK09848 89 LMIFSVLVFWVPTDWSH-------------SSKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQS-----RARLGAA 150 (448)
T ss_pred HHHHHHHHHhCcCCCCc-------------chHHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHH-----HHHHHHH
Confidence 55444443222110000 01133344455667888888888888888887765331 7776665
Q ss_pred hHHH-----HhhhhHHHhhhhhhcccccchhhhHHHHHHHHHHHHHHHHhcccceeecCCCCCCchhhhHHHHHHHHHhc
Q 045562 197 WYFG-----MCMGTFVTLTVLNYIQDNLNWILGFGIPCILMVIALVVFLLGTKIYRYSLKGEEKSPFLRIGQVFVTAVRN 271 (525)
Q Consensus 197 ~~~~-----~~~g~~~gp~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (525)
...+ ..++..++|.+.+.........+..+. .++.+++++..+......++..+++.+++ ...+.+.
T Consensus 151 r~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~e~~~~~~~~~--~~~~~~~----- 222 (448)
T PRK09848 151 RGIAASLTFVCLAFLIGPSIKNSSPEEMVSVYHFWT-IVLAIAGMVLYFICFKSTRENVVRIVAQP--SLKISLQ----- 222 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHH-HHHHHHHHHHHHHHHcCcEeccCCCccCC--CHHHHHH-----
Confidence 4432 346666677766644322111111111 11122222222221111111111110010 0000000
Q ss_pred cccCCchhhhHhhhhCCCCCCCccchhhhhHHHhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccch
Q 045562 272 WRITPSAIALEEEARGTLPHQSSEQFKFLNKALLASNGSKGYGKVCSVGEVEEAKALLRLVPIWTTCLVYAIVFAQSSTF 351 (525)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 351 (525)
...+.|.+...... ....+..+......
T Consensus 223 -------------------------------------------------~l~~n~~f~~~~~~---~~~~~~~~~~~~~~ 250 (448)
T PRK09848 223 -------------------------------------------------TLKRNRPLFMLCIG---ALCVLISTFAVSAS 250 (448)
T ss_pred -------------------------------------------------HHhCCchHHHHHHH---HHHHHHHHHHHhhh
Confidence 01111222221111 11122222222111
Q ss_pred hhhhhhccccCcccccccChhhhhhhh-hHHHHHHHHhhhhhhhhhhhhhccCCCCCCchHHHHHHHHHHHHHHHHHHHH
Q 045562 352 FTKQGVTMDRSVVADFQIPAASLQSFI-SLAIVLTIPIYDRIFVPIARTFTRKPAGITMLQRIGTGMFLSAASMTGATLV 430 (525)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~l~~~~~~~l~~r~~~~~~~~~~~~~i~ig~~l~~i~~~~~~~~ 430 (525)
.+.+ .....+. .. ..+.+...+ .+..++..|+.++ +.+|+++ ++.+.+|.++..++.+...+.
T Consensus 251 ~~~~---~~~~~g~-~~-~~~~~~~~~~~~~~~~~~~l~~~----l~~r~g~-------~~~~~~g~~~~~i~~~~~~~~ 314 (448)
T PRK09848 251 SLFY---VRYVLND-TG-LFTVLVLVQNLVGTVASAPLVPG----MVARIGK-------KNTFLIGALLGTCGYLLFFWV 314 (448)
T ss_pred heee---EeeecCC-hH-HHHHHHHHHHHHHHHHHHHHHHH----HHHHhCc-------HHHHHHHHHHHHHHHHHHHHc
Confidence 1110 1111111 00 011111222 2333444555444 6667544 377888888888877666542
Q ss_pred HHHHHhhhhhcCCcCCCCCCccchHHHHHHHHHHHHHHHHHHhhhhHHHhhhccCch-------hHHHHHHHHHHHHHHH
Q 045562 431 EMKRLKTAEEYGLVDKPNVTIPMSVWWLIPQYALLGVSEAFTMVGLQEFFYDQVPTE-------LRSVGLSLYLSIFGVG 503 (525)
Q Consensus 431 ~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~-------~rg~~~gi~~~~~~lg 503 (525)
. ..+.+.+....++.++|+++..+..++...+.+|.+ .+|.++|++++.+.+|
T Consensus 315 ~--------------------~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg 374 (448)
T PRK09848 315 S--------------------VWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCG 374 (448)
T ss_pred C--------------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHH
Confidence 1 135566666778899999999999999999998865 4699999999999999
Q ss_pred HHHHHHHHHHhhhhccCCC
Q 045562 504 SFLSSFLISAIENATGGDG 522 (525)
Q Consensus 504 ~~lg~~~~~~i~~~~~~~g 522 (525)
..+|+.+.+.+.+.+|-+.
T Consensus 375 ~aig~~i~g~~l~~~G~~~ 393 (448)
T PRK09848 375 QAIGGSIPAFILGLSGYIA 393 (448)
T ss_pred HHHHHHHHHHHHHHcCCCC
Confidence 9999999999988887543
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=7.1e-16 Score=166.55 Aligned_cols=365 Identities=15% Similarity=0.091 Sum_probs=210.7
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHH
Q 045562 77 TAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVLGLGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFS 156 (525)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (525)
+.+++.+.+.++..++.++.|+++|++ |||+.++++.+++.++.++++++.+ ..+++++
T Consensus 90 ~~s~~~s~~~lga~~g~l~~g~l~d~~-GRk~~l~~~~~~~~iG~ii~~~a~~--------------------~~~l~~G 148 (513)
T KOG0254|consen 90 RQGLLTSILNLGALVGSLLAGRLGDRI-GRKKTLLLAVVLFLIGAIIIALAPS--------------------WYQLIVG 148 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHhhh--------------------HHHHHHH
Confidence 458999999999999999999999999 9999999999999999999999865 8999999
Q ss_pred HHHHHhccccCccchhhhhhccccCCCcccccccceehhhhHHHHhhhhHHHhhhhhhcccc-cchhhhHHHHHHHHHHH
Q 045562 157 LYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWYFGMCMGTFVTLTVLNYIQDN-LNWILGFGIPCILMVIA 235 (525)
Q Consensus 157 ~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l~~~-~g~~~~f~~~~~~~~~~ 235 (525)
|++.|+|.|+.....+.+++|..|++. |+...+..+....+|..++..++....+. .+||..+.+..+..++.
T Consensus 149 R~l~G~g~G~~~~~~piy~sEiap~~~------RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~ 222 (513)
T KOG0254|consen 149 RILTGLGVGGASVLAPVYISEIAPAHI------RGTLVSLYQLFITIGILLGYCINYGTSKVYAGWRIPLGLALIPAVIL 222 (513)
T ss_pred HHHhccchhhhhhcchhhHhhcCChhh------hHHHHHHHHHHHHHHHHHHHHHhhhhccCCccHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998 99999999999999999995444444432 48998888877666665
Q ss_pred HHHHHhcccceeecCCCCCCchhhhHHHHHHHHHhccccCCchhhhHhhhhCCCCCCCccchhhhhHHHhhcCCCCCCCc
Q 045562 236 LVVFLLGTKIYRYSLKGEEKSPFLRIGQVFVTAVRNWRITPSAIALEEEARGTLPHQSSEQFKFLNKALLASNGSKGYGK 315 (525)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (525)
.+.++. .++.++..-++ ....+..+. ....++.. +.+...+..+. .............+..++
T Consensus 223 ~~~~~~-~pesp~~L~~~--g~~~~a~~~-l~~l~g~~-~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~ 285 (513)
T KOG0254|consen 223 ALGMLF-LPESPRWLIEK--GRLEEAKRS-LKRLRGLS-PEDVEVELELL------------KIKLLVEAEVAEGKASWG 285 (513)
T ss_pred HHHHHh-CCCChHHHHHc--CChHHHHHH-HHHHhCCC-CcchHHHHHHH------------HHHHHHhhhcccccccHH
Confidence 555333 33222111111 111111121 12122211 01110000000 000000000001111122
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccchh--hhhhhccccCcccccccChhhhhhhhhHHHHHHHHhhhhhh
Q 045562 316 VCSVGEVEEAKALLRLVPIWTTCLVYAIVFAQSSTFF--TKQGVTMDRSVVADFQIPAASLQSFISLAIVLTIPIYDRIF 393 (525)
Q Consensus 316 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~ 393 (525)
+... ...+|+....+.+ ..++|+.... ..+...+-...+ ...+. ........++.+...+..
T Consensus 286 ~l~~--~~~~~~~~i~~~l--------~~fqq~tG~~~~~~Y~~~if~~~g--~~~~~-~~~~~~~~~v~~~~t~~~--- 349 (513)
T KOG0254|consen 286 ELFS--PKVRKRLIIGLLL--------QLFQQLTGINYVFYYSTTIFKSAG--LKSDT-FLASIILGVVNFLGTLVA--- 349 (513)
T ss_pred HhcC--cchHHHHHHHHHH--------HHHHHHhCCceEEeehHHHHHhcC--CCCch-HHHHHHHHHHHHHHHHHH---
Confidence 2211 1223333222211 2223332110 001111111111 22222 222222222222222222
Q ss_pred hhhhhhhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCcCCCCCCccchHHHHHHHHHHHHHHHHHHh
Q 045562 394 VPIARTFTRKPAGITMLQRIGTGMFLSAASMTGATLVEMKRLKTAEEYGLVDKPNVTIPMSVWWLIPQYALLGVSEAFTM 473 (525)
Q Consensus 394 ~~l~~r~~~~~~~~~~~~~i~ig~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~ 473 (525)
.-+.||+||| +.+..|.+.+.++.++.+.......+.....+ ...+..++...+..........
T Consensus 350 ~~lvd~~gRr-------~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~v~~f~~g~g 413 (513)
T KOG0254|consen 350 TYLVDRFGRR-------KLLLFGAAGMSICLVILAVVGVFALYYPNSSK---------GAGWLAIVFLCLFIFSFAIGWG 413 (513)
T ss_pred HHHHHHhccH-------HHHHHhHHHHHHHHHHHHHHHHHhccCCCccc---------chhHHHHHHHHHHHHHHhcccc
Confidence 2367887776 78888999999988887765432110000000 1233333333344444444456
Q ss_pred hhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 045562 474 VGLQEFFYDQVPTELRSVGLSLYLSIFGVGSFLSSFLISAIENA 517 (525)
Q Consensus 474 ~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~~~~~~i~~~ 517 (525)
+..+.+..|..|.+.|+.+.++......+.+.+=..........
T Consensus 414 ~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~ 457 (513)
T KOG0254|consen 414 PVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITEA 457 (513)
T ss_pred cchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66677889999999999999999988888777666655555444
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.3e-17 Score=163.87 Aligned_cols=150 Identities=15% Similarity=0.104 Sum_probs=137.6
Q ss_pred cccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhccCCCCccCCCCcCCCch
Q 045562 69 GPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVLGLGLLTLSAVLLSGSTSECQNTSCSANQF 148 (525)
Q Consensus 69 ~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (525)
.+++.+.+++|++++...+.+.+..++.|.+.||+ |+|-.+++|+.++.+.++++++..+
T Consensus 99 ~~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~i-Gy~ipm~~Gl~vmf~sTilFafg~s------------------- 158 (464)
T KOG3764|consen 99 ISLDRENTQIGLLFASKALVQLLVNPFFGNLIDRI-GYKIPMVAGLFVMFLSTILFAFGNS------------------- 158 (464)
T ss_pred cCccccccchhHHHHHHHHHHHHhcccchhhHHHh-ccccHHHHHHHHHHHHHHHHHHcch-------------------
Confidence 34566778999999999999999999999999998 9999999999999999999999876
Q ss_pred hHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhhHHHHhhhhHHHhhhhhhcccccchhhhHHHH
Q 045562 149 QVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWYFGMCMGTFVTLTVLNYIQDNLNWILGFGIP 228 (525)
Q Consensus 149 ~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l~~~~g~~~~f~~~ 228 (525)
+++++++|.++|+|.++...+..++++|.||+++. |++++|..-....+|-.+||.++|.+.+..|++.+|++.
T Consensus 159 -y~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d~e-----r~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL 232 (464)
T KOG3764|consen 159 -YPMLFVARSLQGVGSAFADTSGLAMLADVFPEDNE-----RGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVL 232 (464)
T ss_pred -hHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccchh-----hhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHH
Confidence 78999999999999999999999999999998763 899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccc
Q 045562 229 CILMVIALVVFLLGTK 244 (525)
Q Consensus 229 ~~~~~~~~~~~~~~~~ 244 (525)
+++.++-..+.++..+
T Consensus 233 ~~v~Lld~~L~l~vi~ 248 (464)
T KOG3764|consen 233 AIVLLLDGALQLLVIE 248 (464)
T ss_pred HHHHHHHHHHHHheeC
Confidence 9888886666555554
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.75 E-value=8.5e-16 Score=158.82 Aligned_cols=155 Identities=14% Similarity=0.130 Sum_probs=135.8
Q ss_pred HHHHHHHhccccCCChHH-HHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhccCCCCcc
Q 045562 60 SSNLITYLTGPLAQSTAT-AAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVLGLGLLTLSAVLLSGSTSEC 138 (525)
Q Consensus 60 ~~~l~~yl~~~lg~s~~~-~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 138 (525)
.++...|+.+++|++..+ .|.+.+++..++.+..+++|+++||+ |.|+++.++.+...+..+++.+..+
T Consensus 45 ~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrl-G~K~vL~l~~l~Wsl~t~L~~fa~S--------- 114 (511)
T TIGR00806 45 ESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYL-RYKPVLVLQALSFVCVWLLLLLGTS--------- 114 (511)
T ss_pred HHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHHHHHHHHHHHHH---------
Confidence 466777999999999999 99999999999999999999999999 9999999999999999999998765
Q ss_pred CCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhhHHHHhhhhHHHhhhhhhcccc
Q 045562 139 QNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWYFGMCMGTFVTLTVLNYIQDN 218 (525)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l~~~ 218 (525)
+..+.+.|++.|++.|... +...++..++|+++ |+++.++...+..+|.++++++++++ ..
T Consensus 115 -----------l~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kE------R~ratsi~~sg~~vG~~Ia~~L~qll-~s 175 (511)
T TIGR00806 115 -----------VWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSR------YQRAAAYSRAAVLLGVFLSSVLGQLL-VT 175 (511)
T ss_pred -----------HHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH-Hh
Confidence 7899999999999999999 99999999999999 99999999999999999999999994 46
Q ss_pred cchhhhHHH---HHHHHHHHHHHHHhcc
Q 045562 219 LNWILGFGI---PCILMVIALVVFLLGT 243 (525)
Q Consensus 219 ~g~~~~f~~---~~~~~~~~~~~~~~~~ 243 (525)
+||+.-+.+ +.....+++++.++.+
T Consensus 176 ~gWr~y~~Ln~Isl~s~~~a~~~a~~LP 203 (511)
T TIGR00806 176 LGWISYSTLNIISLVFMTFSVFLALFLK 203 (511)
T ss_pred cCchhHHHHHHHHHHHHHHHHHHHHhCC
Confidence 888875544 4444444555544444
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.7e-15 Score=160.54 Aligned_cols=355 Identities=14% Similarity=0.097 Sum_probs=215.8
Q ss_pred cccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhccCCCCccCCCCcCCCch
Q 045562 69 GPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVLGLGLLTLSAVLLSGSTSECQNTSCSANQF 148 (525)
Q Consensus 69 ~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (525)
+..+.+........+.+.++..+++++.|.++||+ |||++++.++++.+++.++.+++.+
T Consensus 111 ~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~-GRk~~~~~~~~~~~i~~~~~a~a~~------------------- 170 (521)
T KOG0255|consen 111 NLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRF-GRKPVLLVSLLLFIIFGILTAFAPN------------------- 170 (521)
T ss_pred ceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhc-ccHHHHHHHHHHHHHHHHHHHHhCc-------------------
Confidence 56677788888999999999999999999999997 9999999999999999999998865
Q ss_pred hHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhhHHHHhhhhHHHhhhhhhcccccchhhhHHHH
Q 045562 149 QVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWYFGMCMGTFVTLTVLNYIQDNLNWILGFGIP 228 (525)
Q Consensus 149 ~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l~~~~g~~~~f~~~ 228 (525)
++.+++.|++.|++.++.......+++|++++++ |+.+.++ ......++.++|..++++.. +||+.+++.
T Consensus 171 -~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~------R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~ 240 (521)
T KOG0255|consen 171 -YWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQ------RGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWII 240 (521)
T ss_pred -HHHHHHHHHHHHhhccchhHHhHhhheeecCcch------hhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHH
Confidence 8999999999999999999999999999999999 9999999 88888888999999999887 899999988
Q ss_pred HHHHHHHHHHHHhcccceeecCCCCCCchhhhHHHHHHHHHhcc--ccCCchhhhHhhhhCCCCCCCccchhhhhHHHhh
Q 045562 229 CILMVIALVVFLLGTKIYRYSLKGEEKSPFLRIGQVFVTAVRNW--RITPSAIALEEEARGTLPHQSSEQFKFLNKALLA 306 (525)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (525)
.+..++.++..++.++..+....++ ..++..+......+.. ........... .........
T Consensus 241 ~~~~~~~~~~~~l~~Es~rwl~~~g---~~~~a~~~l~~~a~~n~~~~~~~~~~~~~--------------~~~~~~~~~ 303 (521)
T KOG0255|consen 241 SIPSGLFLLLWFLPPESPRWLLSKG---RIDEAIKILKKIAKLNGRKLSVKELLRLE--------------LLLRPLKLL 303 (521)
T ss_pred HHHHHHHHHHHHccCcChHHHHHcC---chHHHHHHHHHHHhhcCCCCCcHHHHHHH--------------HHhhHhhhh
Confidence 8776666555333322222111111 1122333333322211 11000000000 000000000
Q ss_pred cCCCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhccccCcccccccChhhhhhhhhHHHHHHH
Q 045562 307 SNGSKGYGKVCSVGEVEEAKALLRLVPIWTTCLVYAIVFAQSSTFFTKQGVTMDRSVVADFQIPAASLQSFISLAIVLTI 386 (525)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 386 (525)
..+.+..+.+.... ...+++..... +....+...++....+.. . .+............ .-.
T Consensus 304 ~~~~~~~~~~l~~~-~~l~~~~~~~~---~~~~~~~~~y~gl~~~~~--------~----lg~~~~~~~~~~~~---~~~ 364 (521)
T KOG0255|consen 304 FTEPKISFLDLFRT-PRLRYRTLYLL---FIWFVFSLVYYGLSLNVS--------G----LGGNIYLNFTLSGL---VEL 364 (521)
T ss_pred ccCCCCchhhhhcC-HHHHHHHHHHH---HHHHHHhHHHHhhhhhhh--------h----cCchHHHHHHHHHH---HHh
Confidence 00011111111110 11112211111 111111112111111110 0 11111111222222 112
Q ss_pred HhhhhhhhhhhhhhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCcCCCCCCccchHHHHHHHHHHHH
Q 045562 387 PIYDRIFVPIARTFTRKPAGITMLQRIGTGMFLSAASMTGATLVEMKRLKTAEEYGLVDKPNVTIPMSVWWLIPQYALLG 466 (525)
Q Consensus 387 ~l~~~~~~~l~~r~~~~~~~~~~~~~i~ig~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~l~g 466 (525)
|..-. .....+|.+|| .....+.++.+++.++.++.... ...+.......+..
T Consensus 365 p~~~~-~~~~~~~~gR~-------~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~ 417 (521)
T KOG0255|consen 365 PAYFR-NGLLLPEFGRR-------PPLFLSLFLAGIGLLLFGWLPDD-------------------LGGWLHWILPLLGK 417 (521)
T ss_pred hHHHH-HHHHHHHhCcH-------HHHHHHHHHHHHHHHHHHHhhcc-------------------chhHHHHHHHHHHH
Confidence 21111 12355665544 77888888889988888876311 11122333334444
Q ss_pred HHHHHHhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 045562 467 VSEAFTMVGLQEFFYDQVPTELRSVGLSLYLSIFGVGSFLSSFLISAIEN 516 (525)
Q Consensus 467 ~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~~~~~~i~~ 516 (525)
.+....+...+.+..++.|+..|+.+.+..+....+|+++++.+......
T Consensus 418 ~~~~~~~~~~~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~ 467 (521)
T KOG0255|consen 418 FFIGSAFNLIFLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQ 467 (521)
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44455555558899999999999999999999999999999999865544
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.5e-15 Score=160.20 Aligned_cols=389 Identities=15% Similarity=0.109 Sum_probs=230.1
Q ss_pred CcchH-HHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccc-----hHHHHH
Q 045562 38 GWRSA-LFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLG-----RYRAII 111 (525)
Q Consensus 38 ~~~~~-~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~G-----rr~~~~ 111 (525)
+++.. ..+...++...+. +.+...++.++.+++|.+.++.+...+...+...+-++ +|.++||+ + ||+.++
T Consensus 23 ~~~~~~~~~~~~y~~qGl~-~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~-~i~G~rRr~~l~ 99 (468)
T TIGR00788 23 HPRVVLAIGLQVLFVKGIA-GLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTF-PLFGYTKRWYLV 99 (468)
T ss_pred CcchHHHHHHHHHHHhhHH-HHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhc-CCCCccchHHHH
Confidence 34444 4455577888888 77888899999999999999998888888888777555 99999999 7 777777
Q ss_pred HHHHHHH-HHHHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCccccccc
Q 045562 112 IASLIYV-LGLGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLK 190 (525)
Q Consensus 112 ~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r 190 (525)
++.++.. ++...++... .......+.+++.+++.+...+...++..|..+ ++++ .+
T Consensus 100 ~~~~l~~~~~~~~l~~~~-------------------~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~---~~ 156 (468)
T TIGR00788 100 LSGLLGSAILYGLLPGKV-------------------SSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPS---AG 156 (468)
T ss_pred HHHHHHHHHHHHhccccc-------------------chHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCC---cC
Confidence 7766542 2222222111 113334446788899999999999999999999 4322 14
Q ss_pred ceehhhhHHHHhhhhHHHhhhhhhcccccchhhhHHHHHHHHHHHHHHHHhcccceeecCCCCCCchhhhHHHHHHHHHh
Q 045562 191 SSFFNWWYFGMCMGTFVTLTVLNYIQDNLNWILGFGIPCILMVIALVVFLLGTKIYRYSLKGEEKSPFLRIGQVFVTAVR 270 (525)
Q Consensus 191 ~~~~~~~~~~~~~g~~~gp~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (525)
+...++.+...++|..+|+.++|++.++++|+..|++.+++.++..+..++.+++.....++..++. .... . .
T Consensus 157 ~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~~~~~~~~~E~~~~~~~~~~~~~---~~~~--~--~ 229 (468)
T TIGR00788 157 PSLVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITAALLLLQLFVSNLSKERRAFVRPRIGTYL---EMNM--A--L 229 (468)
T ss_pred CCeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhcccccccccccccccc---hhhh--h--h
Confidence 5566677777789999999999999999999999999887776664444444332101111110000 0000 0 0
Q ss_pred ccccCCchhhhHhhhhCCCCCCCccchhhhhHHHhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 045562 271 NWRITPSAIALEEEARGTLPHQSSEQFKFLNKALLASNGSKGYGKVCSVGEVEEAKALLRLVPIWTTCLVYAIVFAQSST 350 (525)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 350 (525)
...+.. + ..+..+.+ .. ....++.++..+.+.+.. |........
T Consensus 230 ---~~~~~~-~------------~~~~~~~~---------------l~--~~l~~~~i~~~l~fifl~---~~~~~~~~~ 273 (468)
T TIGR00788 230 ---LTLGVL-A------------NVKVQILG---------------LR--GAIQLLEIAKPLIFIFLS---YANLPGASG 273 (468)
T ss_pred ---hhhhHH-H------------HHHHHHHH---------------HH--HHHhcHHHHHHHHHHHHH---HhhcCCCCc
Confidence 000000 0 00000000 00 011112222222211110 111111111
Q ss_pred h-hhhhhhccccCcccccccChhhhhhhhhHHHHHHHHhhhhhhhhhhhhhccCCCCCCchHHHHHHHHHHHHHHHHHHH
Q 045562 351 F-FTKQGVTMDRSVVADFQIPAASLQSFISLAIVLTIPIYDRIFVPIARTFTRKPAGITMLQRIGTGMFLSAASMTGATL 429 (525)
Q Consensus 351 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~l~~r~~~~~~~~~~~~~i~ig~~l~~i~~~~~~~ 429 (525)
. +..+ ....+. .....+......++..++...++++ +.+| .+.++.+.++.++.+++.....+
T Consensus 274 ~~f~~~----~~~lG~-s~~~~G~~~~~~~v~~i~g~~~~~~----~~~~-------~~~r~~l~~~~~l~~~~~~~~~~ 337 (468)
T TIGR00788 274 SVFCAT----TQCLPG-GPSFSGMSKVVGNLGSLCGVGGYDR----FLKT-------FPYRLLFGVTTLLYTLSSLFDLI 337 (468)
T ss_pred eeEEEE----cccCCC-CcchhhhHHHHHHHHHHHHHHHHHH----HHhh-------CCHHHHHHHHHHHHHHHHhCcee
Confidence 1 1110 111121 1111222334444445555555444 3444 45667788888888777654332
Q ss_pred HHHHHHhhhhhcCCcCCCCCCccchHHHHHHHHHHHHHHHHHHhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHH
Q 045562 430 VEMKRLKTAEEYGLVDKPNVTIPMSVWWLIPQYALLGVSEAFTMVGLQEFFYDQVPTELRSVGLSLYLSIFGVGSFLSSF 509 (525)
Q Consensus 430 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~~ 509 (525)
..+.. +...| ..+.+++....++.+++.++...+...++.+.+|++.+|+..++.+...++|..+++.
T Consensus 338 l~~~~---~~~~g---------i~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~ 405 (468)
T TIGR00788 338 LVKRW---NLAFG---------ISDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGF 405 (468)
T ss_pred eeecc---ccccC---------CCCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHH
Confidence 11000 00001 0123445556778888888989999999999999999999999999999999999999
Q ss_pred HHHHhhhhccCCCC
Q 045562 510 LISAIENATGGDGR 523 (525)
Q Consensus 510 ~~~~i~~~~~~~g~ 523 (525)
+++.+.+..|...+
T Consensus 406 ~gg~l~~~~g~~~~ 419 (468)
T TIGR00788 406 LGVLLMETIGITCD 419 (468)
T ss_pred HHHHHHHHcCCCcc
Confidence 99999999985433
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.5e-14 Score=148.93 Aligned_cols=352 Identities=17% Similarity=0.150 Sum_probs=198.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHHHHHHHHHH
Q 045562 47 GVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVLGLGLLTL 126 (525)
Q Consensus 47 ~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~~~~~l~~~ 126 (525)
...|+.-+.+-...++++.|++ +.|+|..++|.+.+...+...+.++++|+++||...+||++.++.++..+...+...
T Consensus 9 ~~~f~~f~~~G~~~p~~~~~L~-~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~ 87 (400)
T PF03825_consen 9 LMYFLYFFAYGAFLPYLPLYLE-SRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAF 87 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444455689999998 578999999999999999999999999999999856788887776666655544444
Q ss_pred hhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhhHHHHhhhhH
Q 045562 127 SAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWYFGMCMGTF 206 (525)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ 206 (525)
..+ ++.++...++..+......|...++.-+...++ +.-++-.-.-+.+|-+
T Consensus 88 ~~~--------------------f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~~~--------~~~YG~iRlwGSiGf~ 139 (400)
T PF03825_consen 88 SSS--------------------FWWLFVIMLLFSFFFSPTMPLSDSIALSYLGDR--------GKDYGRIRLWGSIGFI 139 (400)
T ss_pred hcc--------------------HHHHHHHHHHHHHHHccHHHHHHHHHHHHcccc--------cCCCCcchhhhhHHHH
Confidence 332 455566666677777777788888877776632 2223332333344444
Q ss_pred HHhhh-hhhccccc---chhhhHHHHHHHHHHHHHHHHhcccceeecCCCCCCchhhhHHHHHHHHHhccccCCchhhhH
Q 045562 207 VTLTV-LNYIQDNL---NWILGFGIPCILMVIALVVFLLGTKIYRYSLKGEEKSPFLRIGQVFVTAVRNWRITPSAIALE 282 (525)
Q Consensus 207 ~gp~~-~~~l~~~~---g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (525)
++... ++++.... +....+++.+...++.....+..++..++++.++ +....
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ll~~~~l~lp~~~~~~~~~~--~~~~~---------------------- 195 (400)
T PF03825_consen 140 VAALAFGGLLGGYLGISGTSLIFYIAAILSLLLAGFALFLPKTPPKRSAKE--SVKKL---------------------- 195 (400)
T ss_pred HHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHHHHhCCCCccccccCC--Ccccc----------------------
Confidence 44222 22222222 2233455554433322222222222111111111 00000
Q ss_pred hhhhCCCCCCCccchhhhhHHHhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhccccC
Q 045562 283 EEARGTLPHQSSEQFKFLNKALLASNGSKGYGKVCSVGEVEEAKALLRLVPIWTTCLVYAIVFAQSSTFFTKQGVTMDRS 362 (525)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (525)
.+++.. +..++++.++-.+..++.... ...++.+...+....
T Consensus 196 ------------------------------~~~~~~-~llk~~~~~~Fll~~~l~~~~-~~~~~~f~~~yl~~~------ 237 (400)
T PF03825_consen 196 ------------------------------LGLDAL-KLLKNPRFLVFLLAAFLIGIS-HAAYYTFFSIYLQEL------ 237 (400)
T ss_pred ------------------------------cchHHH-HHhcCccHHHHHHHHHHHHHH-HHHHHHHHHHHHHHc------
Confidence 000000 001111111111111111111 122222222222110
Q ss_pred cccccccChhhhhhhhhHHHHHHHHhhhhhhhhhhhhhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcC
Q 045562 363 VVADFQIPAASLQSFISLAIVLTIPIYDRIFVPIARTFTRKPAGITMLQRIGTGMFLSAASMTGATLVEMKRLKTAEEYG 442 (525)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~l~~r~~~~~~~~~~~~~i~ig~~l~~i~~~~~~~~~~~~~~~~~~~g 442 (525)
++ ..........++..+.=.|++ -..+|+-+| ++..+.+.++.+..++=+..+++..
T Consensus 238 -gg---~~~~~~g~~~~l~~~aEi~~f-----~~~~~~~~r---~g~~~ll~~a~~~~~vR~~l~a~~~----------- 294 (400)
T PF03825_consen 238 -GG---YSGSTIGILWALGVVAEIPFF-----FFSGRFLKR---FGIKWLLLLALVAYAVRWLLYAYFS----------- 294 (400)
T ss_pred -cc---chhhHHHHHHHHHHHHHHHHH-----HHHHHHHHh---cCHHHHHHHHHHHHHHHHHHHHHhc-----------
Confidence 00 111112222222222223332 133444444 5677889999999999998888752
Q ss_pred CcCCCCCCccchHHH----HHHHHHHHHHHHHHHhhhhHHHhhhccCchhHHHHHHHHHH-HHHHHHHHHHHHHHHhhhh
Q 045562 443 LVDKPNVTIPMSVWW----LIPQYALLGVSEAFTMVGLQEFFYDQVPTELRSVGLSLYLS-IFGVGSFLSSFLISAIENA 517 (525)
Q Consensus 443 ~~~~~~~~~~~~~~~----l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~-~~~lg~~lg~~~~~~i~~~ 517 (525)
.+.+. ..+..++.|+..++.......|+.+.+|++.|++++++++. ..++|..+|+.+.|++.+.
T Consensus 295 ----------~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~ 364 (400)
T PF03825_consen 295 ----------DPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDA 364 (400)
T ss_pred ----------CCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 12222 22234579999999999999999999999999999999984 5789999999999999999
Q ss_pred ccCCC
Q 045562 518 TGGDG 522 (525)
Q Consensus 518 ~~~~g 522 (525)
.|.++
T Consensus 365 ~g~~~ 369 (400)
T PF03825_consen 365 FGARG 369 (400)
T ss_pred hcchh
Confidence 88765
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.1e-14 Score=152.89 Aligned_cols=186 Identities=12% Similarity=0.120 Sum_probs=131.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhc---cchH-HHHHHHHH
Q 045562 40 RSALFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSF---LGRY-RAIIIASL 115 (525)
Q Consensus 40 ~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~---~Grr-~~~~~~~~ 115 (525)
++-+.-...++..++.+..+..++..|+++.+|+++..+|.+....-+..++.-|+.|+++||. +||| +-+.++.+
T Consensus 9 ~~k~~Yg~g~~~~~~~~~~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i 88 (460)
T PRK11462 9 KEKIGYGMGDAASHIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGAL 88 (460)
T ss_pred hHHHhhccchhhhhHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHH
Confidence 3344444667777788888888999999999999999999999999999999999999999973 3665 55556767
Q ss_pred HHHHHHHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehh
Q 045562 116 IYVLGLGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFN 195 (525)
Q Consensus 116 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 195 (525)
.++++.+++..... .+. +.....+++.-.+..++......+..++.+|+.++.++ |.+..+
T Consensus 89 ~~~i~~~llf~~p~---~s~-----------~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~e-----Rt~l~s 149 (460)
T PRK11462 89 PFGIVCVLAYSTPD---LSM-----------NGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQ-----RISLQS 149 (460)
T ss_pred HHHHHHHHHHhCCC---CCc-----------chHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHH-----HHHHHH
Confidence 77777766654421 110 12233445555556777777778889999999985432 999999
Q ss_pred hhHHHHhhhhHHHhhhhhhcccc-------cchhhhHHHHHHHHHHHHHHHHhccc
Q 045562 196 WWYFGMCMGTFVTLTVLNYIQDN-------LNWILGFGIPCILMVIALVVFLLGTK 244 (525)
Q Consensus 196 ~~~~~~~~g~~~gp~~~~~l~~~-------~g~~~~f~~~~~~~~~~~~~~~~~~~ 244 (525)
+.....++|..+++.+...+... .||+....+.+++.+++.++.+...|
T Consensus 150 ~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~~i~~~~~k 205 (460)
T PRK11462 150 WRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMMLAFCFFTTK 205 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHhcce
Confidence 99998898888887766544332 24666555555554445444444433
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.66 E-value=8.5e-14 Score=139.57 Aligned_cols=137 Identities=17% Similarity=0.140 Sum_probs=121.6
Q ss_pred HHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhccCCCC
Q 045562 57 YGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVLGLGLLTLSAVLLSGSTS 136 (525)
Q Consensus 57 y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 136 (525)
......+.+++++.++.+..+++.+..++..++.++.++.|++.+|+ |+|+.++.|+.+++++..++.-+..
T Consensus 29 ~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~-gyk~gi~lgL~l~avg~~lF~pAa~------- 100 (422)
T COG0738 29 TCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKL-GYKAGIVLGLLLYAVGAALFWPAAS------- 100 (422)
T ss_pred hhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHh-hhHHHHHHHHHHHHHHHHHHhhhhh-------
Confidence 34456677788899999999999999999999999999999999999 9999999999999999988875533
Q ss_pred ccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhhHHHHhhhhHHHhhhhhhcc
Q 045562 137 ECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWYFGMCMGTFVTLTVLNYIQ 216 (525)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l~ 216 (525)
...+.+++.+.++++.|.+....+..++++.+.|+++ ..+-++..+....+|+.+||++++++.
T Consensus 101 ----------~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~------a~~rlnl~q~fn~lGa~~gp~~g~~li 164 (422)
T COG0738 101 ----------SKSYGFFLVALFILASGIGLLETAANPYVTLLGKPES------AAFRLNLAQAFNGLGAILGPLLGSSLI 164 (422)
T ss_pred ----------hhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchh------HHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 1347899999999999999999999999999999876 667788888888999999999999876
Q ss_pred c
Q 045562 217 D 217 (525)
Q Consensus 217 ~ 217 (525)
.
T Consensus 165 l 165 (422)
T COG0738 165 L 165 (422)
T ss_pred H
Confidence 6
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.64 E-value=5.2e-14 Score=144.65 Aligned_cols=364 Identities=12% Similarity=0.017 Sum_probs=210.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHH-H
Q 045562 40 RSALFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIY-V 118 (525)
Q Consensus 40 ~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~-~ 118 (525)
++.+......+...++.-...++++.++++..|+|.+++|.+.++..+...+.+|+.|.++||+ |.||-+++...+. .
T Consensus 7 ~~~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dkl-g~kK~Ll~~i~~l~~ 85 (412)
T PF01306_consen 7 KNYWWLSLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKL-GLKKHLLWFIAILLL 85 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHC-TTCSHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchh-hhhHHHHHHHHHHHH
Confidence 4566666666666666666779999999998999999999999999999999999999999998 8666554433322 2
Q ss_pred HHHHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhc----cccCccchhhhhhccccCCCcccccccceeh
Q 045562 119 LGLGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALG----QGGHKPCVQAFGADQFDSQHPLESKLKSSFF 194 (525)
Q Consensus 119 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g----~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 194 (525)
+....+..... |.. ..-+.++.++.++. .....|...+++-+.... .+-=+
T Consensus 86 l~~pff~~v~~-pll----------------~~n~~lg~iig~i~l~~~f~~~~~~~Ea~~er~sr~--------~~feY 140 (412)
T PF01306_consen 86 LFGPFFIYVFG-PLL----------------QSNFWLGAIIGGIYLGLVFNAGVPLSEAYAERVSRR--------NGFEY 140 (412)
T ss_dssp TCHHHHHHTHH-HHH----------------HTT-HHHHHHTTTTTTTTTTTHHHHHHHHHHHHHHH--------HSS-H
T ss_pred HHHHHHHHHHH-HHH----------------HHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHH--------hcCCc
Confidence 21111111100 000 01122233333333 333334444443222211 23344
Q ss_pred hhhHHHHhhhhHHHhhhhhhcccccchhhhHHHHHHHHHHHHHHHHhcccceeecCCCCCCchhhhHHHHHHHHHhcccc
Q 045562 195 NWWYFGMCMGTFVTLTVLNYIQDNLNWILGFGIPCILMVIALVVFLLGTKIYRYSLKGEEKSPFLRIGQVFVTAVRNWRI 274 (525)
Q Consensus 195 ~~~~~~~~~g~~~gp~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (525)
|-.-.-+++|.+++..++|++.+ .+-+..|++.....++..++++..+++.+++.+.. +.
T Consensus 141 G~~R~wGSig~ai~s~~~G~L~~-i~p~~~fwi~s~~~~il~lll~~~~~~~~~~~~~~--~~----------------- 200 (412)
T PF01306_consen 141 GRARMWGSIGFAIASLLAGILFN-INPNIIFWIASAAAIILLLLLLLLKPDVPPQAEVA--DA----------------- 200 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHSS---SSSSS-SS--TT-----------------
T ss_pred chHHHHhhHHHHHHHHHhheeee-eCccHHHHHHHHHHHHHHHHHHHcCCcCchhhhhh--cc-----------------
Confidence 44555678999999999999886 56677888766555544444444433211111000 00
Q ss_pred CCchhhhHhhhhCCCCCCCccchhhhhHHHhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHH-hhccchhh
Q 045562 275 TPSAIALEEEARGTLPHQSSEQFKFLNKALLASNGSKGYGKVCSVGEVEEAKALLRLVPIWTTCLVYAIVF-AQSSTFFT 353 (525)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~ 353 (525)
.-++.++.+. ++.. .....|+++..+.+.......|..+ +|++.++.
T Consensus 201 ---------------~~~~~~~~~~---------------~~~~--~l~k~~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~ 248 (412)
T PF01306_consen 201 ---------------LGAKKDKVSL---------------KDVL--SLFKMRNFWFFVLFVIGVAAIYDVFDQQFPIYFA 248 (412)
T ss_dssp ---------------SSS------H---------------HHHH--HHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------------cccCCCCCcH---------------HHHH--HHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000000000 0000 1122234444444444444444444 44455544
Q ss_pred hhhhccccCcccccccChhhhhhhhhHHHHHHHHhhhhhhhhhhhhhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 045562 354 KQGVTMDRSVVADFQIPAASLQSFISLAIVLTIPIYDRIFVPIARTFTRKPAGITMLQRIGTGMFLSAASMTGATLVEMK 433 (525)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~l~~r~~~~~~~~~~~~~i~ig~~l~~i~~~~~~~~~~~ 433 (525)
.+-.. .+..+..+...+++-+++=.+++.. ..++.+| +++++.+.++...+.+=....++.
T Consensus 249 ~~f~~--------~~~g~~~~G~l~s~~v~~E~~~m~~-~p~li~r-------ig~k~~Lllag~i~~iRi~~~~~~--- 309 (412)
T PF01306_consen 249 SFFQS--------AGQGNQMYGYLWSVQVFLEALMMFF-SPWLINR-------IGAKNLLLLAGVIMAIRIIGSGFA--- 309 (412)
T ss_dssp HTSSS--------HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH-------H-HHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHhcc--------cccChhHHhHHHHHHHHHHHHHHHH-HHHHHHh-------cChHhHHHHHHHHHHHHHHHHhhh---
Confidence 32211 1111223333333333333333221 2236677 455588888888888888888874
Q ss_pred HHhhhhhcCCcCCCCCCccchHHHHHHHHHHHHHHHHHHhhhhHHHhhhccCchhHHHHHHHH-HHHHHHHHHHHHHHHH
Q 045562 434 RLKTAEEYGLVDKPNVTIPMSVWWLIPQYALLGVSEAFTMVGLQEFFYDQVPTELRSVGLSLY-LSIFGVGSFLSSFLIS 512 (525)
Q Consensus 434 ~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~-~~~~~lg~~lg~~~~~ 512 (525)
.+++++.+.-.+.++-..+......-|+.+..|++..++...+. ++..++|..+.+.+.|
T Consensus 310 -------------------~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G 370 (412)
T PF01306_consen 310 -------------------TNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAG 370 (412)
T ss_dssp --------------------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred -------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 47888999999999999999999999999999999999988885 6999999999999999
Q ss_pred Hhhhhcc
Q 045562 513 AIENATG 519 (525)
Q Consensus 513 ~i~~~~~ 519 (525)
.+.|..|
T Consensus 371 ~lyd~~G 377 (412)
T PF01306_consen 371 YLYDRIG 377 (412)
T ss_dssp HHHHHHH
T ss_pred hhHhhcC
Confidence 9999876
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.9e-15 Score=151.54 Aligned_cols=175 Identities=18% Similarity=0.201 Sum_probs=120.8
Q ss_pred CcchHHHHHH---HHHHHHHHHHHHHHHHHHHhcccc-------CCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchH
Q 045562 38 GWRSALFIIG---VEMAERFAYYGVSSNLITYLTGPL-------AQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRY 107 (525)
Q Consensus 38 ~~~~~~~~~~---~~~~~~~~~y~~~~~l~~yl~~~l-------g~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr 107 (525)
+|+....+.. .-|......+.+....+.+-.-+. ++++...+.+.++..++.++++++.||++|++ |||
T Consensus 36 qw~~fk~i~iAG~GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~-GRK 114 (538)
T KOG0252|consen 36 QWKHFKAIIIAGMGFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKF-GRK 114 (538)
T ss_pred hHHHHHHHHHhhhhhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhh-cch
Confidence 4555444443 333344444444444443322222 25667778888999999999999999999999 999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhccCCCCccCCCCcCCCc-hhHHHHHHHHHHHHhccccCccchhhhhhccccCCCccc
Q 045562 108 RAIIIASLIYVLGLGLLTLSAVLLSGSTSECQNTSCSANQ-FQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLE 186 (525)
Q Consensus 108 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~ 186 (525)
+++...++++++++++++++.. .+.+ .-..++++.|+++|+|.|+-+|...++.+|....+.
T Consensus 115 ~vYG~~liImIi~t~~~~~s~~--------------~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~--- 177 (538)
T KOG0252|consen 115 KVYGKELIIMIICSALSGLSVG--------------TTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKT--- 177 (538)
T ss_pred hhhhHHHHHHHHHHHHhccCCC--------------CCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhcc---
Confidence 9999999999999987776543 2222 346889999999999999999999999999998887
Q ss_pred ccccceehhhhHHHHhhh----hHHHhhhhhhcccc-----------cchhhhHHHHHHHHH
Q 045562 187 SKLKSSFFNWWYFGMCMG----TFVTLTVLNYIQDN-----------LNWILGFGIPCILMV 233 (525)
Q Consensus 187 ~~~r~~~~~~~~~~~~~g----~~~gp~~~~~l~~~-----------~g~~~~f~~~~~~~~ 233 (525)
|+...+....+...| ++++.++.+-...- .=||..|.+.++..+
T Consensus 178 ---RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~ 236 (538)
T KOG0252|consen 178 ---RGAFIAAVFAMQGFGILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPAL 236 (538)
T ss_pred ---ccceeEEEEEecchhHhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHH
Confidence 777666655555444 44444444332211 128888877665443
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.63 E-value=6.6e-14 Score=149.55 Aligned_cols=401 Identities=16% Similarity=0.102 Sum_probs=252.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHH
Q 045562 42 ALFIIGVEMAERFAYYGVSS---NLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYV 118 (525)
Q Consensus 42 ~~~~~~~~~~~~~~~y~~~~---~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~ 118 (525)
-|++.+..|..+...|++.. .+-..++++++.+..+++|+.+.......+..|+.+.+.||+ |.|++.+.|.++..
T Consensus 44 gWvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rf-g~R~v~i~G~~v~~ 122 (509)
T KOG2504|consen 44 GWVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRF-GCRTVMIAGGLVAA 122 (509)
T ss_pred eeeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhc-CchHHHHHHHHHHH
Confidence 45666666666666666653 344567789999999999999999999999999999999999 99999999999999
Q ss_pred HHHHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHH-HHHHhccccCccchhhhhhccccCCCcccccccceehhhh
Q 045562 119 LGLGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSL-YLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWW 197 (525)
Q Consensus 119 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 197 (525)
+|.++..++.+ .+.+++.. ++.|+|.|........+++..|+++ |+.+.|+-
T Consensus 123 ~g~~lssF~~~--------------------i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~kk-------R~lA~Gia 175 (509)
T KOG2504|consen 123 LGLLLSSFATS--------------------LWQLYLTFGVIGGLGLGLIYLPAVVILGTYFEKK-------RALATGIA 175 (509)
T ss_pred HHHHHHHHHhh--------------------HHHHHHHHHHHhhccchhhhcchhhhhhhHhHHH-------HHHHHhhh
Confidence 99999999865 56555544 4579999999999999999888754 79999999
Q ss_pred HHHHhhhhHHHhhhhhhcccccchhhhHHHHHHHHHHHHHHHHhcccceeecCCCCCCchhhhHHHHHHHHHhccccCCc
Q 045562 198 YFGMCMGTFVTLTVLNYIQDNLNWILGFGIPCILMVIALVVFLLGTKIYRYSLKGEEKSPFLRIGQVFVTAVRNWRITPS 277 (525)
Q Consensus 198 ~~~~~~g~~~gp~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (525)
..+..+|..+=|.+.-++.+..|||..+++.+.+.+-.++.....++.....++.++ +..+..........+..+...
T Consensus 176 ~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~- 253 (509)
T KOG2504|consen 176 VSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGALLRPLSPPKKPNEE-KDLRNSAASVESTPKPVELRI- 253 (509)
T ss_pred hccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCCCCcCCCchhh-hhhcccccccccccccccccc-
Confidence 999999999999999999999999999998887776555555555553322222110 110000000000000000000
Q ss_pred hhhhHhhhhCCCCCCCccchhhhhHHHhhcCCCC-CCCc-cc---chhhHHHHHHHHHHHHHHHHHHHHHHHHhhccchh
Q 045562 278 AIALEEEARGTLPHQSSEQFKFLNKALLASNGSK-GYGK-VC---SVGEVEEAKALLRLVPIWTTCLVYAIVFAQSSTFF 352 (525)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 352 (525)
...+.+.......+.....+ .+++.. .+-+ .. +.+...+ +.+ +.+.+.....+..+......+
T Consensus 254 ----~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~d~~ll~~-~~f---l~~~~~~~~~~~g~~~p~~~l 321 (509)
T KOG2504|consen 254 ----SERDSGLKKLSLSNLATLKR----GPDKWRNSPLQAFLSMLDLSLLKD-PKF---LLLALSNLFAYLGFNVPFVYL 321 (509)
T ss_pred ----ccCCCCCCcccccchhhhhh----CCccccccchhhhhhhhhHHHHcC-chH---HHHHHHHHHHHHHHHHHHHHH
Confidence 00000000000000000000 000000 0000 00 0011111 111 111222222222222222223
Q ss_pred hhhhhccccCcccccccChhhhhhhhhHHHHHHHHhhhhhhhhhhhhhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHH
Q 045562 353 TKQGVTMDRSVVADFQIPAASLQSFISLAIVLTIPIYDRIFVPIARTFTRKPAGITMLQRIGTGMFLSAASMTGATLVEM 432 (525)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~l~~r~~~~~~~~~~~~~i~ig~~l~~i~~~~~~~~~~ 432 (525)
+.+.. ..+. .......+.++.++.-++.-++.+. +.|+.. ++......++++..+++..+....
T Consensus 322 ~~~~~----~~g~-~~~~aa~l~Siigi~~i~gRi~~G~----laD~~~-----~~~~~~~~~~ll~~gl~~~~~p~~-- 385 (509)
T KOG2504|consen 322 PSYAK----SLGL-SSNDAAFLLSIIGVSDIIGRIILGL----LADKPG-----IRALVLFLLTLLIAGLARLFLPFA-- 385 (509)
T ss_pred HHHHh----hcCC-ChhhhHHHHHHHHHhhhhhhhhhhh----hcCccc-----cchHHHHHHHHHHHHHHHHHHHHh--
Confidence 33222 1111 2233344556666666677776666 555532 233455677777777777555553
Q ss_pred HHHhhhhhcCCcCCCCCCccchHHHHHHHHHHHHHHHHHHhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 045562 433 KRLKTAEEYGLVDKPNVTIPMSVWWLIPQYALLGVSEAFTMVGLQEFFYDQVPTELRSVGLSLYLSIFGVGSFLSSFLIS 512 (525)
Q Consensus 433 ~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~~~~~ 512 (525)
.+.+.++..-+++|++.+.........+.+.++.+.-..+.|+..++.+++..+|+.+.|
T Consensus 386 --------------------~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag 445 (509)
T KOG2504|consen 386 --------------------TTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAG 445 (509)
T ss_pred --------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccce
Confidence 366778888889999999888888889999999999999999999999999999999999
Q ss_pred HhhhhccC
Q 045562 513 AIENATGG 520 (525)
Q Consensus 513 ~i~~~~~~ 520 (525)
++.|.+|+
T Consensus 446 ~~~d~tg~ 453 (509)
T KOG2504|consen 446 LLYDITGN 453 (509)
T ss_pred eeeeccCC
Confidence 99998874
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.2e-13 Score=140.27 Aligned_cols=372 Identities=15% Similarity=0.113 Sum_probs=244.8
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhc---cc-hHHHHHHHH
Q 045562 39 WRSALFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSF---LG-RYRAIIIAS 114 (525)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~---~G-rr~~~~~~~ 114 (525)
.|+...-...++..++.+-.+..++..|.++..|+++..+|.+..+.-+..++.-|+.|.++||. +| ||+-+.++.
T Consensus 11 ~~eki~Yg~gd~~~~~~~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ 90 (467)
T COG2211 11 LKEKIGYGLGDFASNFAFGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGA 90 (467)
T ss_pred HHHHHhhcchhhHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHh
Confidence 45556666788888899888999999999999999999999999999999999999999999975 24 466667777
Q ss_pred HHHHHHHHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceeh
Q 045562 115 LIYVLGLGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFF 194 (525)
Q Consensus 115 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 194 (525)
+-.++..+++..+... +.+.+....++.-.+.+++......+..++.+++.++.++ |.+..
T Consensus 91 ip~~i~~~l~F~~p~~--------------~~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~E-----R~~l~ 151 (467)
T COG2211 91 IPFAIVAVLLFITPDF--------------SMTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQE-----RASLT 151 (467)
T ss_pred HHHHHHHHHHHcCCCc--------------ccCcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHH-----HHHHH
Confidence 8788888777766431 1123356666777788999999999999999999976432 99999
Q ss_pred hhhHHHHhhhhHHHhhhhhhcc-----c--ccchhhhHHHHHHHHHHHHHHHHhcccceee-cCCCCCCchhhhHHHHHH
Q 045562 195 NWWYFGMCMGTFVTLTVLNYIQ-----D--NLNWILGFGIPCILMVIALVVFLLGTKIYRY-SLKGEEKSPFLRIGQVFV 266 (525)
Q Consensus 195 ~~~~~~~~~g~~~gp~~~~~l~-----~--~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 266 (525)
++.....++|..+...+...+. + ..||+..-.+.+++.++..+.++...+|... ..+.+ +
T Consensus 152 s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~~~~~~~~--~---------- 219 (467)
T COG2211 152 SWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVILLLFCFFNVKERVVETQPTK--T---------- 219 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcccCccccCc--c----------
Confidence 9988888888666554444432 2 3477777666666666666665555443322 11111 0
Q ss_pred HHHhccccCCchhhhHhhhhCCCCCCCccchhhhhHHHhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045562 267 TAVRNWRITPSAIALEEEARGTLPHQSSEQFKFLNKALLASNGSKGYGKVCSVGEVEEAKALLRLVPIWTTCLVYAIVFA 346 (525)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 346 (525)
++ +.++++... ...+.|.++..+.+.++.........
T Consensus 220 ---------------------------~~---------------~~~~~~~~~-~~~~Nrp~~~~l~~~l~~~~~~~i~~ 256 (467)
T COG2211 220 ---------------------------GV---------------KLKLKDSFL-LIFKNRPLLLLLLMNLLLFIAFNIRG 256 (467)
T ss_pred ---------------------------cc---------------cccHHHHHH-HHHccchHHHHHHHHHHHHHHHHHHh
Confidence 00 000000000 01122233232223332222222222
Q ss_pred hccchhhhhhhccccCcccccccChhhhhhhhhHHHHHHHHhhhhhhhhhhhhhccCCCCCCchHHHHHHHHHHHHHHHH
Q 045562 347 QSSTFFTKQGVTMDRSVVADFQIPAASLQSFISLAIVLTIPIYDRIFVPIARTFTRKPAGITMLQRIGTGMFLSAASMTG 426 (525)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~l~~r~~~~~~~~~~~~~i~ig~~l~~i~~~~ 426 (525)
....++..+ .++. .+..+...........++..+++.+ +.+|+++| +...+|.++..++.+.
T Consensus 257 s~~~yy~~y--~lg~-----~~l~~~~~~~~~~~~~l~~~~~~p~----L~~~~gkk-------~~~~~~~~~~~i~~~~ 318 (467)
T COG2211 257 SIMVYYVTY--VLGD-----PELFAYLLLLASGAGLLIGLILWPR----LVKKFGKK-------KLFLIGLLLLAVGYLL 318 (467)
T ss_pred hhhheeEEE--EcCC-----hHHHHHHHHHHHHHHHHHHHHhHHH----HHHHhchH-------HHHHHHHHHHHHHHHH
Confidence 222222221 1221 1111222222222222232444333 66675554 8888999999999888
Q ss_pred HHHHHHHHHhhhhhcCCcCCCCCCccchHHHHHHHHHHHHHHHHHHhhhhHHHhhhccCc-------hhHHHHHHHHHHH
Q 045562 427 ATLVEMKRLKTAEEYGLVDKPNVTIPMSVWWLIPQYALLGVSEAFTMVGLQEFFYDQVPT-------ELRSVGLSLYLSI 499 (525)
Q Consensus 427 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~-------~~rg~~~gi~~~~ 499 (525)
..+.. +.+.+.+++..++.++|.+...+..++.+.+..+. +..|...|...++
T Consensus 319 ~~f~~--------------------~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~ 378 (467)
T COG2211 319 LYFTP--------------------AGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFF 378 (467)
T ss_pred HHhhc--------------------CcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHH
Confidence 88763 24567777777999999999999999999988753 4678899999999
Q ss_pred HHHHHHHHHHHHHHhhhhccCCC
Q 045562 500 FGVGSFLSSFLISAIENATGGDG 522 (525)
Q Consensus 500 ~~lg~~lg~~~~~~i~~~~~~~g 522 (525)
.-+|..++..+.|++-...|-.-
T Consensus 379 ~K~g~ala~~~~g~~L~~~Gyv~ 401 (467)
T COG2211 379 RKLGLALAGFIPGWILGAIGYVP 401 (467)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCC
Confidence 99999999999999998887543
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.61 E-value=6.7e-13 Score=131.33 Aligned_cols=344 Identities=16% Similarity=0.153 Sum_probs=236.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHHHHH
Q 045562 42 ALFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVLGL 121 (525)
Q Consensus 42 ~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~~~~ 121 (525)
+..++++.+=.+-..-++-+.++ -+.+++|.|.+.+|.+.+...++..+..++..+++.|+ |.++.+..++++..+|.
T Consensus 14 i~gIvlia~NLR~~itsvgPLL~-~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~-g~er~l~~~Llli~~G~ 91 (395)
T COG2807 14 LAGIVLIAFNLRPAITSVGPLLD-EIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRF-GEERSLFLALLLIAAGI 91 (395)
T ss_pred HHHHHHHHhccchhhhhhhhhHH-HHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-hhHHHHHHHHHHHHHHH
Confidence 33444444445556655655554 57889999999999999999999999999999999998 99999999999888887
Q ss_pred HHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhhHHHH
Q 045562 122 GLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWYFGM 201 (525)
Q Consensus 122 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 201 (525)
.+=.... ...++.+-.+.|.|.+......++.+.+.||++. +..++.|....
T Consensus 92 ~iR~~~~---------------------~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~~-------~~mtglYs~sl 143 (395)
T COG2807 92 LIRSLGG---------------------LPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKRV-------GLMTGLYSTSL 143 (395)
T ss_pred HHHhccc---------------------HHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccch-------hhHHhHHHHHH
Confidence 6655432 4678888889999999999999999999999775 88999999999
Q ss_pred hhhhHHHhhhhhhccccc-chhhhHHHHHHHHHHHHHHHHhcccceeecCCCCCCchhhhHHHHHHHHHhccccCCchhh
Q 045562 202 CMGTFVTLTVLNYIQDNL-NWILGFGIPCILMVIALVVFLLGTKIYRYSLKGEEKSPFLRIGQVFVTAVRNWRITPSAIA 280 (525)
Q Consensus 202 ~~g~~~gp~~~~~l~~~~-g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (525)
++|+.+++.+...+.++. ||+....+-+...++++++++.-..+.+.....+++.+
T Consensus 144 ~~~aaLaa~lavpla~~~~gW~~aL~~WAl~allAl~~WlPq~~r~~~~~~~~~~~~----------------------- 200 (395)
T COG2807 144 GAGAALAAALAVPLAQHSGGWRGALGFWALLALLALLIWLPQALREQAASIATKLVS----------------------- 200 (395)
T ss_pred HHHHHHHhhhhhHHHHhhccHHHHHHHHHHHHHHHHHHHhhhccccccccccccccc-----------------------
Confidence 999999999999888877 79999888777777776666554221111000000000
Q ss_pred hHhhhhCCCCCCCccchhhhhHHHhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhccc
Q 045562 281 LEEEARGTLPHQSSEQFKFLNKALLASNGSKGYGKVCSVGEVEEAKALLRLVPIWTTCLVYAIVFAQSSTFFTKQGVTMD 360 (525)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (525)
...-|+ ++...-..+-+-+.+..+|..+.+++..+.++.. +
T Consensus 201 -----------------------------~~~vw~--------~~~aW~vtLfmGlqS~~~Y~~~~WLP~ili~~G~--s 241 (395)
T COG2807 201 -----------------------------VRKVWR--------SPLAWQVTLFMGLQSLLYYIVIGWLPAILIDRGL--S 241 (395)
T ss_pred -----------------------------cccccc--------CchhHHHHHHHHhhHHHHHHHHHHHHHHHHHcCC--C
Confidence 000010 0111111222335667888888888888776432 2
Q ss_pred cCcccccccChhhhh---hhhhHHHHHHHHhhhhhhhhhhhhhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 045562 361 RSVVADFQIPAASLQ---SFISLAIVLTIPIYDRIFVPIARTFTRKPAGITMLQRIGTGMFLSAASMTGATLVEMKRLKT 437 (525)
Q Consensus 361 ~~~~~~~~~~~~~~~---~~~~~~~i~~~~l~~~~~~~l~~r~~~~~~~~~~~~~i~ig~~l~~i~~~~~~~~~~~~~~~ 437 (525)
.. ..+.+. .+..+..-+.+|+ +.+|.. +.+........++.+++..+.+..
T Consensus 242 a~-------~aG~llsl~~l~~~~~~ll~P~-------la~R~~------n~r~~~~~~~~~~l~G~~G~~~~P------ 295 (395)
T COG2807 242 AA-------EAGSLLSLMQLAQLPTALLIPL-------LARRSK------NQRPLVVLALLLMLVGLVGLLLAP------ 295 (395)
T ss_pred HH-------HhhhHHHHHHHHHHHHHHHHHH-------HHHHhc------ccchHHHHHHHHHHHHHHHHHHhh------
Confidence 11 112222 2223333344454 455521 333555666666666666666542
Q ss_pred hhhcCCcCCCCCCccchHHHHHHHHHHHHHHHHHHhhhhHHHhhhcc-CchhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 045562 438 AEEYGLVDKPNVTIPMSVWWLIPQYALLGVSEAFTMVGLQEFFYDQV-PTELRSVGLSLYLSIFGVGSFLSSFLISAIEN 516 (525)
Q Consensus 438 ~~~~g~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~-P~~~rg~~~gi~~~~~~lg~~lg~~~~~~i~~ 516 (525)
.+.+++. .++.|+|.+..+|....++.... .++..+.-+|+.+...++-+.+||.+.|++.|
T Consensus 296 ---------------~~~~~lw--~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhD 358 (395)
T COG2807 296 ---------------GQLPILW--ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHD 358 (395)
T ss_pred ---------------hhHHHHH--HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHH
Confidence 2322232 47889998998988888877555 45566778888888888999999999999999
Q ss_pred hccC
Q 045562 517 ATGG 520 (525)
Q Consensus 517 ~~~~ 520 (525)
.+|+
T Consensus 359 a~gs 362 (395)
T COG2807 359 ATGS 362 (395)
T ss_pred hcCC
Confidence 9986
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.4e-13 Score=131.99 Aligned_cols=389 Identities=12% Similarity=0.022 Sum_probs=216.7
Q ss_pred HHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhc
Q 045562 52 ERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVLGLGLLTLSAVLL 131 (525)
Q Consensus 52 ~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~~~~~l~~~~~~~~ 131 (525)
+.....++.+.+.+-+....|.+.-+..++......+..++...+|.++|++ |||+...+......+...+-..+.
T Consensus 89 ad~m~~m~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~-grr~~f~~T~l~t~v~~~is~~sp--- 164 (528)
T KOG0253|consen 89 ADAMEMMLLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTI-GRRKGFNLTFLVTGVFGVISGASP--- 164 (528)
T ss_pred HHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhh-hcchhhhhhHHHHHHHHHhhcCCC---
Confidence 3334445566666777778888888888888899999999999999999999 999999887776655555544442
Q ss_pred cCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhhHHHHhhhhHHHhhh
Q 045562 132 SGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWYFGMCMGTFVTLTV 211 (525)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~ 211 (525)
++..+++.|.+.|+|.|+ .|...++-.|..|..+ |....=+. ....+|.++...+
T Consensus 165 -----------------nf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~------r~~~~V~~-~~waig~v~ea~l 219 (528)
T KOG0253|consen 165 -----------------NFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSH------RWLLTVMS-FFWAIGQVFEALL 219 (528)
T ss_pred -----------------CeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcC------CCcchhHH-HHHHHHHHHHHHH
Confidence 378899999999999999 8999999999999888 66665555 6778999999888
Q ss_pred hhhcccccchhhhHHHHHHHHHHHHHHHHhcccceeecCCCCCCchhhhHHHHHHHHHhccccCCc-hhhhHhhhhCCCC
Q 045562 212 LNYIQDNLNWILGFGIPCILMVIALVVFLLGTKIYRYSLKGEEKSPFLRIGQVFVTAVRNWRITPS-AIALEEEARGTLP 290 (525)
Q Consensus 212 ~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 290 (525)
+-.+..++|||+-.........+....+++..+..+.....+ ++ .+....+..+.+....+.+ .+.+.+.+ ++
T Consensus 220 aw~vm~~~gwr~~l~~~~~pl~~~a~f~~w~~ESpRf~~~~G--~~-~kAletL~kiArmNg~qlplgvl~~s~~---~~ 293 (528)
T KOG0253|consen 220 AWGVMSNFGWRYLLFTSSTPLMFAARFLVWVYESPRFYLAKG--DD-YKALETLHKIARMNGKQLPLGVLESSAI---DR 293 (528)
T ss_pred HHHHHHhhhHHHHHHHHHhHHHHHHHHHhhcccCcchhhhcC--Ch-HHHHHHHHHHHHhcCCCCCcceeeeehh---hh
Confidence 888888999999776666554444445555444333222222 11 1122222232222222111 11110000 00
Q ss_pred CCCccchhhhhHHHhhc-CCCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhh-----------hhhc
Q 045562 291 HQSSEQFKFLNKALLAS-NGSKGYGKVCSVGEVEEAKALLRLVPIWTTCLVYAIVFAQSSTFFTK-----------QGVT 358 (525)
Q Consensus 291 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~ 358 (525)
.++ +..-.+..+... ++......... ...-+|+.+..-.+++.+...|....-..+-+.. ++..
T Consensus 294 ~e~--e~~~~~~~~~~a~ke~rg~~~nLl--sp~lrkttlllw~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e 369 (528)
T KOG0253|consen 294 QEQ--EESDLDDSKSSAAKEVRGGTTNLL--SPKLRKTTLLLWRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTE 369 (528)
T ss_pred hhh--hhhchhhhhhccccccccchHhhc--ChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCccccchhcchhH
Confidence 000 000000000000 00111111111 1233344333333333333222211111111111 0111
Q ss_pred cccCcccccccChhhhhhhhhHHHHHHHHhhhhhhhhhhhhhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 045562 359 MDRSVVADFQIPAASLQSFISLAIVLTIPIYDRIFVPIARTFTRKPAGITMLQRIGTGMFLSAASMTGATLVEMKRLKTA 438 (525)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~l~~r~~~~~~~~~~~~~i~ig~~l~~i~~~~~~~~~~~~~~~~ 438 (525)
++....-..-....+...+..-..=+.+.+.. ..+.||+||| +.|...++++++..+....-.
T Consensus 370 ~e~~~~c~~s~~~dYrdllitslaefPGlLIt---~~iverlGRK-------kTMal~l~~f~iflfll~~c~------- 432 (528)
T KOG0253|consen 370 LETRANCPLSVAKDYRDLLITSLAEFPGLLIT---GVIVERLGRK-------KTMALSLILFGIFLFLLTTCK------- 432 (528)
T ss_pred HHhhhcCCccchhHHHHHHHHHHhhCCchhHH---HHHHHHhcch-------hHHHHHHHHHHHHHHHHHHhc-------
Confidence 11000000000111111221111112222222 2378888887 778888888888766555421
Q ss_pred hhcCCcCCCCCCccchHHHHHHHHHHHHHHHHHHhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 045562 439 EEYGLVDKPNVTIPMSVWWLIPQYALLGVSEAFTMVGLQEFFYDQVPTELRSVGLSLYLSIFGVGSFLSSFLI 511 (525)
Q Consensus 439 ~~~g~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~~~~ 511 (525)
+........+..-+.....+...+.|..|..|...|+++.|....+..+|+++.|+++
T Consensus 433 ---------------~rn~~tvllf~arafisg~fqvaYvYtPEVyPTavRatgvGtcSsmaRIggI~~p~iA 490 (528)
T KOG0253|consen 433 ---------------TRNAYTVLLFTARAFISGAFQVAYVYTPEVYPTAVRATGVGTCSSMARIGGIFSPVIA 490 (528)
T ss_pred ---------------CcchhHHHHHHHHHHHhchheEEEEecCcccchhhhhcchhhhhhHHhhhhhhhhHHH
Confidence 1111222223333334445677789999999999999999999999999999999887
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.5e-11 Score=130.74 Aligned_cols=341 Identities=16% Similarity=0.112 Sum_probs=188.6
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHH-HHHHHHHHHHHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHH
Q 045562 78 AAENVNAWSGVASLLPLFGAFLADSFLGRYRAII-IASLIYVLGLGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFS 156 (525)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (525)
.+...++..+...+..|+.|-++|+- |+||-++ +...+..++..++.+... ..++...+.
T Consensus 72 ~~~~~sis~l~~all~P~lGa~aD~~-~~Rk~~l~~~~~~~~~~~~~l~~v~~------------------~~~~~~~~l 132 (477)
T PF11700_consen 72 WLYANSISGLLQALLAPFLGAIADYG-GRRKRFLLIFTLLGVLATALLWFVSP------------------GQWWLALVL 132 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccc-ccchHHHHHHHHHHHHHHHHHHHhCc------------------chHHHHHHH
Confidence 35667778888999999999999997 6555554 445556666666666521 113333333
Q ss_pred HHHHHhccccCccchhhhhhccccCCCcccc--------------------cccceehhhhHHHHhhhhHHHhhhhhhcc
Q 045562 157 LYLIALGQGGHKPCVQAFGADQFDSQHPLES--------------------KLKSSFFNWWYFGMCMGTFVTLTVLNYIQ 216 (525)
Q Consensus 157 ~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~--------------------~~r~~~~~~~~~~~~~g~~~gp~~~~~l~ 216 (525)
.++..++.+.......+++.|..++++..+. ..|++..+.-+..+.+|+.+...+.-.+.
T Consensus 133 ~iia~v~~~~~~vfyna~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~ 212 (477)
T PF11700_consen 133 FIIANVGYEASNVFYNAYLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLV 212 (477)
T ss_pred HHHHHHHHHHHHHHHHHHhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444566666677889999999998872000 00178888888888888888766654432
Q ss_pred c--------ccchhhhHHHHHHHHHH-HHHHHHhcccceee-cCCCCCCchhhhHHHHHHHHHhccccCCchhhhHhhhh
Q 045562 217 D--------NLNWILGFGIPCILMVI-ALVVFLLGTKIYRY-SLKGEEKSPFLRIGQVFVTAVRNWRITPSAIALEEEAR 286 (525)
Q Consensus 217 ~--------~~g~~~~f~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (525)
. ..+.|.++.+.++..++ ++..++..+++.+. ..+.. ++....-.+.+..
T Consensus 213 ~~~~~~~~~~~~~r~~~~~~a~ww~vfsiP~~~~~~~~~~~~~~~~~-~~~~~~g~~~l~~------------------- 272 (477)
T PF11700_consen 213 ISPGSTASNTWAIRVAFLIVALWWLVFSIPLFLWLPDRPGPRPLPSG-SSYLRFGFKRLWR------------------- 272 (477)
T ss_pred HcCCCccccchhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcc-hhHHHHHHHHHHH-------------------
Confidence 1 23357777777765444 44444444443221 11111 0111111111111
Q ss_pred CCCCCCCccchhhhhHHHhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhccccCcccc
Q 045562 287 GTLPHQSSEQFKFLNKALLASNGSKGYGKVCSVGEVEEAKALLRLVPIWTTCLVYAIVFAQSSTFFTKQGVTMDRSVVAD 366 (525)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (525)
..++.++......+++..+++--..+........++ ...
T Consensus 273 ----------------------------------t~k~~~~~~~~~~fLia~~l~~dg~~ti~~~~~i~a---~~~---- 311 (477)
T PF11700_consen 273 ----------------------------------TFKEIRKLRQLFLFLIAYFLYSDGVNTIISFAGIYA---TEV---- 311 (477)
T ss_pred ----------------------------------HHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHh----
Confidence 112222221222222222222222222212111111 111
Q ss_pred cccChhhhhhhhhHHHHHHHHhhhhhhhhhhhhhccCCCCCCchHHHHHHHHHHHHHHH--HHHHHHHHHHhhhhhcCCc
Q 045562 367 FQIPAASLQSFISLAIVLTIPIYDRIFVPIARTFTRKPAGITMLQRIGTGMFLSAASMT--GATLVEMKRLKTAEEYGLV 444 (525)
Q Consensus 367 ~~~~~~~~~~~~~~~~i~~~~l~~~~~~~l~~r~~~~~~~~~~~~~i~ig~~l~~i~~~--~~~~~~~~~~~~~~~~g~~ 444 (525)
.+++...+. ...++..+..-+...+..++.||++-| +.+.+.++++++.+..+ .+++... ..|
T Consensus 312 lg~s~~~l~-~~~l~~~i~a~~Ga~~~g~l~~r~g~k-----~~~~l~~~l~~~~~i~~~g~~G~~~~-------~~g-- 376 (477)
T PF11700_consen 312 LGMSTTQLI-VFGLVVQIVAIIGALLFGWLQDRFGPK-----TKRTLLISLILWIIIPLYGLFGFWPS-------FFG-- 376 (477)
T ss_pred cCcCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCCc-----hhHHHHHHHHHHHHHHHHHHHHhhhc-------ccC--
Confidence 112222211 112222223333333344477776543 11344444444422222 2222110 111
Q ss_pred CCCCCCccchHHHHHHHHHHHHHHHHHHhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC
Q 045562 445 DKPNVTIPMSVWWLIPQYALLGVSEAFTMVGLQEFFYDQVPTELRSVGLSLYLSIFGVGSFLSSFLISAIENATGG 520 (525)
Q Consensus 445 ~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~~~~~~i~~~~~~ 520 (525)
..+.+.+.+..++.|+..+...+..-++.+++.|++..+...|+|.+.....+.+||++.|.+.+.+|+
T Consensus 377 -------~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~ 445 (477)
T PF11700_consen 377 -------LKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGS 445 (477)
T ss_pred -------cccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 235566666778899999999999999999999999999999999999999999999999999999975
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.3e-11 Score=133.37 Aligned_cols=163 Identities=11% Similarity=0.036 Sum_probs=123.3
Q ss_pred HHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 045562 53 RFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVLGLGLLTLSAVLLS 132 (525)
Q Consensus 53 ~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~~~~~l~~~~~~~~~ 132 (525)
....|++. .....+++++|+|..+.+++.+... ......++.|+++||+ |||+++.++.++..++.++++++.+. .
T Consensus 40 ~g~~y~fs-v~s~~L~~~lgls~~~l~~i~svg~-~~g~~~lp~G~L~Dr~-G~R~vllig~ll~~iG~ll~ala~~~-~ 115 (591)
T PTZ00207 40 TSFMYAFN-LISGAMQARYNLTQRDLSTITTVGI-AVGYFLLPYSFIYDYL-GPRPIFVLSMTVFCLGTLLFALTFQE-V 115 (591)
T ss_pred HHHHHHHH-HHHHHHHHHhCcCHHHHHHHHHHHH-HHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHHhcc-c
Confidence 34445554 4455688899999999998877643 3446777899999999 99999999999999999999886321 0
Q ss_pred CCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhhHHHHhhhhHH-Hhhh
Q 045562 133 GSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWYFGMCMGTFV-TLTV 211 (525)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~-gp~~ 211 (525)
. ..+.+.+++.|++.|+|.+...+.....+.++|| ++ |+++.++......+|+.+ +++.
T Consensus 116 i-------------~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~------RG~a~Gi~~~~~gLGsaI~~~l~ 175 (591)
T PTZ00207 116 I-------------EGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SN------RGAVVAIMKTFTGLGSAILGSIQ 175 (591)
T ss_pred c-------------cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hh------hHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0237889999999999999888888889999997 55 899999999999999975 5555
Q ss_pred hhhcccccchhhhHHHHHHHHHHHHHHHHh
Q 045562 212 LNYIQDNLNWILGFGIPCILMVIALVVFLL 241 (525)
Q Consensus 212 ~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~ 241 (525)
.+++. .+|+..|++.+++.++..++.+.
T Consensus 176 ~~l~~--~~~~~~fl~l~vl~~vv~ll~~~ 203 (591)
T PTZ00207 176 LAFFS--DNTSAYFFFLMSFALVVGILAIV 203 (591)
T ss_pred HHHHH--HhHHHHHHHHHHHHHHHHHHHHh
Confidence 56554 35777777766555554443333
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.1e-18 Score=181.70 Aligned_cols=144 Identities=17% Similarity=0.259 Sum_probs=120.1
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHH
Q 045562 76 ATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVLGLGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFF 155 (525)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (525)
...++..+...++..++.+++|+++||+ |||++++.+.++.+++.++..++... .+.+.+++
T Consensus 46 ~~~~~~~~~~~~g~~~G~~~~g~~~d~~-GRk~~~~~~~~~~~i~~~~~~~~~~~-----------------~~~~~~~~ 107 (451)
T PF00083_consen 46 LLSSLLTSSFFIGAIVGALIFGFLADRY-GRKPALIISALLMIIGSILIAFAPSY-----------------NNFWMLLI 107 (451)
T ss_pred HHHHHHHHHHHhhhcccccccccccccc-cccccccccccccccccccccccccc-----------------cccccccc
Confidence 3467888999999999999999999999 99999999999999999999888621 12688999
Q ss_pred HHHHHHhccccCccchhhhhhccccCCCcccccccceehhhhHHHHhhhhHHHhhhhhhcccc---cchhhhHHHHHHHH
Q 045562 156 SLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWYFGMCMGTFVTLTVLNYIQDN---LNWILGFGIPCILM 232 (525)
Q Consensus 156 ~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l~~~---~g~~~~f~~~~~~~ 232 (525)
+|++.|++.|+..+....++.|..|++. |++..++.+....+|..++..++-.+.+. .+||..+.+..+..
T Consensus 108 ~R~~~G~~~g~~~~~~~~~~~E~~~~~~------R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~ 181 (451)
T PF00083_consen 108 GRFLIGFGIGGAYVVSPIYISEIAPPKH------RGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPS 181 (451)
T ss_pred cccccccccccccccccccccccccccc------cccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999999999999999999 99999999999999988887776544332 45999988887766
Q ss_pred HHHHHHHHhcc
Q 045562 233 VIALVVFLLGT 243 (525)
Q Consensus 233 ~~~~~~~~~~~ 243 (525)
++.++...+.+
T Consensus 182 l~~~~~~~~~p 192 (451)
T PF00083_consen 182 LLVLLLRFFLP 192 (451)
T ss_pred ccccccccccc
Confidence 55444444433
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.6e-12 Score=137.82 Aligned_cols=151 Identities=13% Similarity=0.116 Sum_probs=125.3
Q ss_pred hccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhccCCCCccCCCCcCCC
Q 045562 67 LTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVLGLGLLTLSAVLLSGSTSECQNTSCSAN 146 (525)
Q Consensus 67 l~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 146 (525)
+.++++....+-+.+.+++.++++++.+++|++.||+ .-.+.+....++..+-.++....+
T Consensus 72 ~~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~-~ls~~l~~~~~~w~~~~~~~~~~~------------------ 132 (495)
T KOG2533|consen 72 LKEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRF-PLSKGLSVSGILWGLFGFLTAAVH------------------ 132 (495)
T ss_pred CccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHHh------------------
Confidence 3478889999999999999999999999999999999 866666655555544444444343
Q ss_pred chhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhhHHHHhhhhHHHhhhhhhc------ccccc
Q 045562 147 QFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWYFGMCMGTFVTLTVLNYI------QDNLN 220 (525)
Q Consensus 147 ~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l------~~~~g 220 (525)
+.+.+++.|+++|+..+...|+...+++.++.+++ |+..+++++...++|.++|.+++..+ ....|
T Consensus 133 --s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e------~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~g 204 (495)
T KOG2533|consen 133 --SFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSE------RGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAG 204 (495)
T ss_pred --hhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhh------hhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCC
Confidence 37999999999999999999999999999999999 99999999999999999999999875 33568
Q ss_pred hhhhHHHHHHHHHHHHHHHHhccc
Q 045562 221 WILGFGIPCILMVIALVVFLLGTK 244 (525)
Q Consensus 221 ~~~~f~~~~~~~~~~~~~~~~~~~ 244 (525)
||+.|++.+++.++..++.++..+
T Consensus 205 W~~~FiI~G~i~~~~gi~~f~~lp 228 (495)
T KOG2533|consen 205 WRWLFIIEGVITLVLGIVVFFFLP 228 (495)
T ss_pred ceeehhHHHHHHHHHHheEEEEec
Confidence 999999999777765555554444
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=5.8e-13 Score=138.97 Aligned_cols=177 Identities=12% Similarity=0.057 Sum_probs=132.8
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHH
Q 045562 38 GWRSALFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIY 117 (525)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~ 117 (525)
+++..+..+...+.....++.+..++|.|+++++|.+..+.+.+.+...+...++.+++|+++||+ |||+.+..+....
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~-g~~~~~~~~~~~~ 292 (393)
T PRK15011 214 NRRDTLLLFVICTLMWGTNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRL-GKRFLMRVAAVAG 292 (393)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHH
Confidence 344444444444444445555667899999999999999999888877777888899999999998 9999887776555
Q ss_pred HHHHHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhh
Q 045562 118 VLGLGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWW 197 (525)
Q Consensus 118 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 197 (525)
.+....+...++ .+.+++.+++.+++.|...+..+++..|.+|+ + |+++.+++
T Consensus 293 ~~~~~~~~~~~~--------------------~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p~-~------~g~~~~~~ 345 (393)
T PRK15011 293 VCFYAGMLMAHS--------------------PAILLGLQLLNAIYIGILGGIGMLYFQDLMPG-Q------AGSATTLY 345 (393)
T ss_pred HHHHHHHHHHhh--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-C------cchHHHHH
Confidence 444433333322 45556677777777666666667778888874 4 78999999
Q ss_pred HHHHhhhhHHHhhhhhhcccccchhhhHHHHHHHHHHHHHHHHhc
Q 045562 198 YFGMCMGTFVTLTVLNYIQDNLNWILGFGIPCILMVIALVVFLLG 242 (525)
Q Consensus 198 ~~~~~~g~~~gp~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~ 242 (525)
+...++|..++|.++|++.+.+||+..|.+..++.+++++..+..
T Consensus 346 ~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~ 390 (393)
T PRK15011 346 TNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLRI 390 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhh
Confidence 888999999999999999999999999998887777766665554
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.7e-13 Score=143.82 Aligned_cols=181 Identities=18% Similarity=0.163 Sum_probs=132.1
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHH
Q 045562 38 GWRSALFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIY 117 (525)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~ 117 (525)
+++.........++..+.+|++..++|.|+++.+|++..+.+.......++..++.+++|+++||+ |||+.+..+.++.
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-grr~~~~~~~~~~ 326 (490)
T PRK10642 248 HWRSLLTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRF-GRRPFVILGSVAL 326 (490)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHH
Confidence 344444444455667788999999999999888999988888777778888889999999999999 9999988877654
Q ss_pred HHHHHH-HHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhh
Q 045562 118 VLGLGL-LTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNW 196 (525)
Q Consensus 118 ~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 196 (525)
.++... +..... .+...+++++++.+++.+...+...+++.|.+|++. |++++++
T Consensus 327 ~~~~~~~~~~~~~------------------~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~------Rg~~~g~ 382 (490)
T PRK10642 327 FVLAIPAFILINS------------------NVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHI------RYSALAA 382 (490)
T ss_pred HHHHHHHHHHHhC------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcc------chHHHHH
Confidence 433332 222211 114556777888887776666777888899999998 9999998
Q ss_pred hHHHHhhhhHHHhhhhhhcccccc-hhhhHHHHHHHHHHHHHHHHhcc
Q 045562 197 WYFGMCMGTFVTLTVLNYIQDNLN-WILGFGIPCILMVIALVVFLLGT 243 (525)
Q Consensus 197 ~~~~~~~g~~~gp~~~~~l~~~~g-~~~~f~~~~~~~~~~~~~~~~~~ 243 (525)
.+....+++.++|.+.+++.+..+ |+.++++..+..+++++..++.+
T Consensus 383 ~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~p 430 (490)
T PRK10642 383 AFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGVTMK 430 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhc
Confidence 666667777889999999877654 66666555555555554444443
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.9e-13 Score=141.65 Aligned_cols=185 Identities=20% Similarity=0.121 Sum_probs=132.5
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHH
Q 045562 36 YGGWRSALFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASL 115 (525)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~ 115 (525)
+++++.........+...+.+|.+..++|.|+++.+|.+......+.........++.++.|+++||+ |||+++..+.+
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~-grr~~~~~~~~ 324 (438)
T PRK09952 246 LRHPGAFLKIIALRLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRF-GRRRVYITGAL 324 (438)
T ss_pred HHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHH
Confidence 34444444444566677888899999999999999999987665555556667778889999999998 99999988776
Q ss_pred HHHHHHHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehh
Q 045562 116 IYVLGLGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFN 195 (525)
Q Consensus 116 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 195 (525)
+.+++...+..... .. .....+++..++.+++.+...+..+++++|.+|++. |+++.+
T Consensus 325 ~~~~~~~~~~~~~~--~~--------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~------r~tg~g 382 (438)
T PRK09952 325 IGTLSAFPFFMALE--AQ--------------SIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASY------RYSGAG 382 (438)
T ss_pred HHHHHHHHHHHHHH--cC--------------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcch------hHHHHh
Confidence 65554433332211 00 013333445566677777777888999999999988 999999
Q ss_pred hhHH-HHhhhhHHHhhhhhhccccc--chhhhHHHHHHHHHHHHHHHHhcc
Q 045562 196 WWYF-GMCMGTFVTLTVLNYIQDNL--NWILGFGIPCILMVIALVVFLLGT 243 (525)
Q Consensus 196 ~~~~-~~~~g~~~gp~~~~~l~~~~--g~~~~f~~~~~~~~~~~~~~~~~~ 243 (525)
+.+. +..+|+.++|.+.+++.+.. +|..++...++..+++.+..+..+
T Consensus 383 ~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~ 433 (438)
T PRK09952 383 VGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALLMK 433 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcc
Confidence 8554 45589999999999997743 488888777766666666555443
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=99.46 E-value=9.9e-11 Score=118.72 Aligned_cols=342 Identities=16% Similarity=0.156 Sum_probs=203.2
Q ss_pred cccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccc-----hH-HHHHHHHHHHHHHHHHHHHhhhhccCCCCccCCCC
Q 045562 69 GPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLG-----RY-RAIIIASLIYVLGLGLLTLSAVLLSGSTSECQNTS 142 (525)
Q Consensus 69 ~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~G-----rr-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 142 (525)
.+++.+..-.+..++...+.+ ..++..|+.||+. + || +-++.|.++...+..+..++......... .
T Consensus 8 vEL~vpA~lv~~lval~~~~a-p~R~~~G~~SD~~-~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~---~-- 80 (403)
T PF03209_consen 8 VELGVPAWLVALLVALHYLVA-PLRVWFGHRSDTH-PSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQ---Q-- 80 (403)
T ss_pred HHhccHHHHHHHHHHHHHHHH-HHHHHhccccccC-cccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHccccc---c--
Confidence 478888888888887777666 4689999999998 6 44 44555666666666665554321111000 0
Q ss_pred cCCCchhHH--HHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhhHHHHhhhhHHHhhhhhhcccccc
Q 045562 143 CSANQFQVI--FFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWYFGMCMGTFVTLTVLNYIQDNLN 220 (525)
Q Consensus 143 ~~~~~~~~~--~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l~~~~g 220 (525)
+..+...+ ...+...+.|+|.+....+..++++|..|+++ |+++.++.+.+.-+|.+++..+.+.+.+.++
T Consensus 81 -~~~~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~------R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s 153 (403)
T PF03209_consen 81 -SSGPFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEER------RPRVVAIVWVMLIVGIIVSAIVFGRLLDPFS 153 (403)
T ss_pred -cccccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhh------hhhhHHHHHHHHHHHHHHHHHHHHHHccccC
Confidence 00011122 34455556788888888899999999999999 9999999999999999999999998877776
Q ss_pred hhhhHH----HHHHHHHHHHHHHHhcccceeecCCCCCCchhhhHHHHHHHHHhccccCCchhhhHhhhhCCCCCCCccc
Q 045562 221 WILGFG----IPCILMVIALVVFLLGTKIYRYSLKGEEKSPFLRIGQVFVTAVRNWRITPSAIALEEEARGTLPHQSSEQ 296 (525)
Q Consensus 221 ~~~~f~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (525)
..-..- ...+..++.++.++-..++.++..+.+ ++++
T Consensus 154 ~~rL~~v~~~~a~i~~~l~~ia~wg~E~r~~~~~~~~---------------------------------------~~~~ 194 (403)
T PF03209_consen 154 PERLIQVIQGVALIALLLNLIALWGQEPRRSRRAAAA---------------------------------------ERPR 194 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCcccccCC---------------------------------------CCCC
Confidence 332222 122223333333444333332222000 0000
Q ss_pred hhhhhHHHhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhccccCcccccccC---hhh
Q 045562 297 FKFLNKALLASNGSKGYGKVCSVGEVEEAKALLRLVPIWTTCLVYAIVFAQSSTFFTKQGVTMDRSVVADFQIP---AAS 373 (525)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 373 (525)
..+.+.. ++. . ..+...+...+.+.....+.. | ...+.-++. + . ++.+ .+.
T Consensus 195 ~~f~~a~-----------~~~----~-~~~~a~~f~~fl~l~t~a~~~--Q-D~iLEPygg--~-V----fgmsv~eTT~ 248 (403)
T PF03209_consen 195 PPFREAW-----------RQV----W-ASPQARRFFVFLFLGTLAFFM--Q-DVILEPYGG--E-V----FGMSVGETTR 248 (403)
T ss_pred ccHHHHH-----------HHH----H-hCCChhHHHHHHHHHHHHHHh--h-HHHcCCchh--H-H----cCCCHHHHHH
Confidence 0111100 000 0 111111222222222211111 1 111111110 0 1 2222 223
Q ss_pred hhhhhhHHHHHHHHhhhhhhhhhhhhhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCcCCCCCCccc
Q 045562 374 LQSFISLAIVLTIPIYDRIFVPIARTFTRKPAGITMLQRIGTGMFLSAASMTGATLVEMKRLKTAEEYGLVDKPNVTIPM 453 (525)
Q Consensus 374 ~~~~~~~~~i~~~~l~~~~~~~l~~r~~~~~~~~~~~~~i~ig~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 453 (525)
+........++...+.+.+ +.+| ..+.+...+|..++.+++........ ..
T Consensus 249 Lta~~~~G~L~G~~~~g~~---l~~~-------~~~~~~a~~G~~~~~~~f~lii~a~~-------------------~~ 299 (403)
T PF03209_consen 249 LTAFWGGGTLLGMLLAGFL---LSRR-------LGKKRTAALGCLLGALAFALIILAGP-------------------LG 299 (403)
T ss_pred HHHHHHHHHHHHHHHHHHH---hcCC-------CCchHHHHHHHHHHHHHHHHHHHHHh-------------------cc
Confidence 4555555555555555553 2233 23335556677777777665554321 23
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 045562 454 SVWWLIPQYALLGVSEAFTMVGLQEFFYDQVPTELRSVGLSLYLSIFGVGSFLSSFLISAIENAT 518 (525)
Q Consensus 454 ~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~~~~~~i~~~~ 518 (525)
+.+.+....+++|++.++......+...+..+++..|..+|.|...+.++..++..+.|.+-|..
T Consensus 300 ~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~ 364 (403)
T PF03209_consen 300 SPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLV 364 (403)
T ss_pred cchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888999999999999999999999999999999999999999999999999999887764
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.46 E-value=7.1e-13 Score=141.55 Aligned_cols=178 Identities=12% Similarity=0.047 Sum_probs=134.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHHH
Q 045562 40 RSALFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVL 119 (525)
Q Consensus 40 ~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~~ 119 (525)
+.+|.+.+..++....++++..|+|.|+++.+|++..+.++......++..++.+++|+++||+ |||+.+.....+..+
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~-g~r~~~~~~~~~~~~ 336 (467)
T PRK09556 258 PVIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLA-NGRRALVACIALALI 336 (467)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCchHHHHHHHHHH
Confidence 4577777778888888888889999999999999999999999889999999999999999999 988877665444333
Q ss_pred HHHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhhHH
Q 045562 120 GLGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWYF 199 (525)
Q Consensus 120 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 199 (525)
+..++..... .+....++.+++.|+...+..........|.+|+++ |+++.++.+.
T Consensus 337 ~~~~~~~~~~------------------~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~------~g~a~gi~~~ 392 (467)
T PRK09556 337 IFTLGVYQHA------------------TSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKA------IGVANGIKGT 392 (467)
T ss_pred HHHHHHHHhc------------------CcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhh------HHHHHHHHHH
Confidence 3322222211 113445566667775443332233456679999988 9999999998
Q ss_pred HHhh-hhHHHhhhhhhccc------------ccchhhhHHHHHHHHHHHHHHHHhc
Q 045562 200 GMCM-GTFVTLTVLNYIQD------------NLNWILGFGIPCILMVIALVVFLLG 242 (525)
Q Consensus 200 ~~~~-g~~~gp~~~~~l~~------------~~g~~~~f~~~~~~~~~~~~~~~~~ 242 (525)
..++ |..++|.+.|++.+ ..||+..|.+..++.+++.+..+..
T Consensus 393 ~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 448 (467)
T PRK09556 393 FAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMAIV 448 (467)
T ss_pred HHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHHHH
Confidence 8886 77999999999998 6789999988877777765554433
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.6e-12 Score=135.63 Aligned_cols=170 Identities=14% Similarity=0.111 Sum_probs=134.9
Q ss_pred HHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhh
Q 045562 50 MAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVLGLGLLTLSAV 129 (525)
Q Consensus 50 ~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~~~~~l~~~~~~ 129 (525)
+...+.++....+++.|+.+ .|.+ +.+.....+.++..++.++.|++.||+ |||+.+..+..+..++..++....+
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (399)
T PRK05122 226 ALASIGFGTIATFITLYYAA-RGWD--GAALALTLFGVAFVGARLLFGNLINRL-GGLRVAIVSLLVEILGLLLLWLAPS 301 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHH-cccc--cchHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34455666677788888864 4653 345556677788888999999999998 9999998888877777766665433
Q ss_pred hccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhhHHHHhhhhHHHh
Q 045562 130 LLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWYFGMCMGTFVTL 209 (525)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp 209 (525)
.+.+++.+++.|++.+...|.....+.|.+|+++ |++++++++...++|..++|
T Consensus 302 --------------------~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~~~g~~~~~ 355 (399)
T PRK05122 302 --------------------PWMALIGAALTGFGFSLVFPALGVEAVKRVPPQN------RGAALGAYSVFLDLSLGITG 355 (399)
T ss_pred --------------------HHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHH------HHHHHHHHHHHHHHHHHHHH
Confidence 4556677888999998888888888889999888 99999999999999999999
Q ss_pred hhhhhcccccchhhhHHHHHHHHHHHHHHHHhcccceeec
Q 045562 210 TVLNYIQDNLNWILGFGIPCILMVIALVVFLLGTKIYRYS 249 (525)
Q Consensus 210 ~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 249 (525)
.+.|++.++.||+..|++.+++.+++++..+..+++.+++
T Consensus 356 ~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (399)
T PRK05122 356 PLAGLVASWFGYPSIFLAAALAALLGLALTWLLYRRAPRA 395 (399)
T ss_pred HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 9999999999999999988887777777666665544433
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.8e-12 Score=133.01 Aligned_cols=169 Identities=12% Similarity=0.120 Sum_probs=134.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHHHH
Q 045562 41 SALFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVLG 120 (525)
Q Consensus 41 ~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~~~ 120 (525)
..+.+....+...........+.+.|. +++|.+..+.+.+...+.+...++.++.|+++||+ |||+.+..+.++..++
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~ 283 (377)
T TIGR00890 206 QFWVLYLSFFLNAVSGLLLIGLYKPYG-QSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKI-GRQKTMSIVFGISAVG 283 (377)
T ss_pred cHHHHHHHHHHHhHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhhhhHHHHHHHHH
Confidence 344444444555555555566677775 46889988899999999999999999999999998 9999999988888887
Q ss_pred HHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhhHHH
Q 045562 121 LGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWYFG 200 (525)
Q Consensus 121 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 200 (525)
.+++..... .....++...++.+++.+...+..++++.|.+|+++ |++++++.+..
T Consensus 284 ~~~~~~~~~------------------~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~------~~~~~g~~~~~ 339 (377)
T TIGR00890 284 MAAMLFIPM------------------LNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPAN------SAANYGFLYTA 339 (377)
T ss_pred HHHHHHccc------------------chhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhh------hhhHhHHHHHH
Confidence 776665432 112334455677788888887888889999999998 99999999999
Q ss_pred HhhhhHHHhhhhhhcccccchhhhHHHHHHHHHHH
Q 045562 201 MCMGTFVTLTVLNYIQDNLNWILGFGIPCILMVIA 235 (525)
Q Consensus 201 ~~~g~~~gp~~~~~l~~~~g~~~~f~~~~~~~~~~ 235 (525)
..+|..++|.+.+++.++.||+..|.+.+++.+++
T Consensus 340 ~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~ 374 (377)
T TIGR00890 340 KAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTS 374 (377)
T ss_pred HHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHh
Confidence 99999999999999999999999998887665554
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.6e-12 Score=132.61 Aligned_cols=170 Identities=18% Similarity=0.109 Sum_probs=131.5
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHH
Q 045562 39 WRSALFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYV 118 (525)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~ 118 (525)
++..+......+......+....++|.|+++++|.+..+.+.......+...++.+++|+++||+ |||+.+..+..+..
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~ 296 (394)
T TIGR00883 218 RKPFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRI-GRRPVLIIFTVLAA 296 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-chHHHHHHHHHHHH
Confidence 33466666777778888888889999999889999999999998889999999999999999998 99998876554443
Q ss_pred HHH-HHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhh
Q 045562 119 LGL-GLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWW 197 (525)
Q Consensus 119 ~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 197 (525)
+.. .+...... . .+.+.+++..++.+++.+...+..++++.|.+|+++ |+++++..
T Consensus 297 ~~~~~~~~~~~~-~----------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~~~~~~~~ 353 (394)
T TIGR00883 297 LLAVPLLMALLD-S----------------GSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEV------RYTGASLA 353 (394)
T ss_pred HHHHHHHHHHhc-C----------------CchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccc------eeeEeeeh
Confidence 332 22221111 0 114555666778888888888999999999999988 99999984
Q ss_pred -HHHHhhhhHHHhhhhhhcccccc-hhhhHHHHHHHH
Q 045562 198 -YFGMCMGTFVTLTVLNYIQDNLN-WILGFGIPCILM 232 (525)
Q Consensus 198 -~~~~~~g~~~gp~~~~~l~~~~g-~~~~f~~~~~~~ 232 (525)
+....+|..++|.++|++.++.| |+..++...+..
T Consensus 354 ~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~~ 390 (394)
T TIGR00883 354 YNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAALA 390 (394)
T ss_pred hHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHHHH
Confidence 45567899999999999999888 887766655443
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.40 E-value=5e-12 Score=130.29 Aligned_cols=164 Identities=14% Similarity=0.103 Sum_probs=128.3
Q ss_pred HHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhh
Q 045562 50 MAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVLGLGLLTLSAV 129 (525)
Q Consensus 50 ~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~~~~~l~~~~~~ 129 (525)
++.....+....++|.|+.+++|.+..+.+.+.....+...++.+++|+++||+ |||+++.++.++..+...+....++
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~~~~~~~~~ 287 (375)
T TIGR00899 209 TLMWGCNILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRF-GKRRLMLLAALAGVAFYTGLAADNS 287 (375)
T ss_pred HHHHHHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchhHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444556788999889999999999888777777778889999999998 9999988877665555444443322
Q ss_pred hccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhhHHHHhhhhHHHh
Q 045562 130 LLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWYFGMCMGTFVTL 209 (525)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp 209 (525)
.+.+++.+++.|++.+...+....+..|..|++ ++++.++++...++|..++|
T Consensus 288 --------------------~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~g~~~g~ 340 (375)
T TIGR00899 288 --------------------LWALLMLQLLNAIFIGILAGIGMLYFQDLMPGR-------AGAATTLYTNTGRVGWIIAG 340 (375)
T ss_pred --------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcch-------hhHHHHHHHHHHHHHHHHHH
Confidence 455666777888888887788888888988753 56999999999999999999
Q ss_pred hhhhhcccccchhhhHHHHHHHHHHHHHHHHh
Q 045562 210 TVLNYIQDNLNWILGFGIPCILMVIALVVFLL 241 (525)
Q Consensus 210 ~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~ 241 (525)
.++|++.+..||+..|++.++..+++.+..+.
T Consensus 341 ~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 372 (375)
T TIGR00899 341 SVGGILAERWSYHAVYWFAIVMLIVALFCLLL 372 (375)
T ss_pred HHHHHHHHhccchhHHHHHHHHHHHHHHHHhe
Confidence 99999999999999999888777766665544
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=4.4e-12 Score=132.32 Aligned_cols=173 Identities=13% Similarity=0.107 Sum_probs=135.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHHH
Q 045562 40 RSALFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVL 119 (525)
Q Consensus 40 ~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~~ 119 (525)
+.++.+.+..+......+.+..++|.|+++.+|+|..+.+...+.+.++..++.+++|+++||+ +||+.+..+..+..+
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~l~~~~~~~~~ 283 (394)
T PRK03699 205 IGVLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFF-DLQRILTVLAGLALV 283 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHh-chhhHHHHHHHHHHH
Confidence 3456666666666777788889999999989999999999999999999999999999999998 999998877766555
Q ss_pred HHHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhhHH
Q 045562 120 GLGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWYF 199 (525)
Q Consensus 120 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 199 (525)
...++....+ ...+.+..++.|++.+...+...+...|..|++ +++..++.+.
T Consensus 284 ~~~~~~~~~~--------------------~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~-------~~~~~g~~~~ 336 (394)
T PRK03699 284 LMYLFVNTDD--------------------PSHLLYAILGLGFFSSAIYTTIITLGSQQTKVA-------SPKLVNFILT 336 (394)
T ss_pred HHHHHHHcCC--------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC-------CHHHHHHHHH
Confidence 5444433321 344455566778877777777777777777633 4666788888
Q ss_pred HHhhhhHHHhhhhhhcccccchhhhHHHHHHHHHHHHHHHH
Q 045562 200 GMCMGTFVTLTVLNYIQDNLNWILGFGIPCILMVIALVVFL 240 (525)
Q Consensus 200 ~~~~g~~~gp~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~ 240 (525)
...+|..++|.+.|++.+..|++..|++.+++.+++...+.
T Consensus 337 ~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~ 377 (394)
T PRK03699 337 CGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFVMCI 377 (394)
T ss_pred hhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHHHHH
Confidence 88999999999999999999999999887776666644433
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.40 E-value=6.7e-12 Score=127.20 Aligned_cols=173 Identities=23% Similarity=0.304 Sum_probs=149.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHH-HHHHHHHHHHH
Q 045562 41 SALFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYR-AIIIASLIYVL 119 (525)
Q Consensus 41 ~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~-~~~~~~~~~~~ 119 (525)
..+......+...........+++.|+.+.+|.+..+.+.......++..++.++.|+++||+ |||+ .+..+..+..+
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~i 254 (352)
T cd06174 176 LLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRL-GRRRLLLLIGLLLAAL 254 (352)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHH
Confidence 334444555666677777778899999888899999999999999999999999999999998 9999 99999888888
Q ss_pred HHHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhhHH
Q 045562 120 GLGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWYF 199 (525)
Q Consensus 120 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 199 (525)
+...+....+ .+..++..++.|++.+...+...+++.|.+|+++ |++.++..+.
T Consensus 255 ~~~~~~~~~~--------------------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~ 308 (352)
T cd06174 255 GLLLLALAPS--------------------LALLLVALLLLGFGLGFAFPALLTLASELAPPEA------RGTASGLFNT 308 (352)
T ss_pred HHHHHHHhcc--------------------HHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHH------HHHHHHHHHH
Confidence 8877776543 5677888899999999999999999999999988 9999999999
Q ss_pred HHhhhhHHHhhhhhhcccccchhhhHHHHHHHHHHHHHHHH
Q 045562 200 GMCMGTFVTLTVLNYIQDNLNWILGFGIPCILMVIALVVFL 240 (525)
Q Consensus 200 ~~~~g~~~gp~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~ 240 (525)
..++|..++|.+.+++.+..+|+..|.+.++..+++.+...
T Consensus 309 ~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~~ 349 (352)
T cd06174 309 FGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLL 349 (352)
T ss_pred HHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHhe
Confidence 99999999999999999989999999988877776655543
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.39 E-value=7.6e-12 Score=128.78 Aligned_cols=177 Identities=15% Similarity=0.015 Sum_probs=129.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHH-HHHHHHHHH
Q 045562 40 RSALFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRA-IIIASLIYV 118 (525)
Q Consensus 40 ~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~-~~~~~~~~~ 118 (525)
|..+......+......+.+..++|.|+.+.+|.+..+.+++.....++..++.+++|+++||+ |||+. +........
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~ 293 (399)
T TIGR00893 215 RRVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLL-LRRGKSLVFARKTAI 293 (399)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-hhcccchhHHHHHHH
Confidence 4566677777788888888889999999999999999999999999999999999999999998 88861 111111111
Q ss_pred HH---HHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehh
Q 045562 119 LG---LGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFN 195 (525)
Q Consensus 119 ~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 195 (525)
++ ..+...... .. ......+....+.+++.+ ..+...+++.|.+|+++ |+++++
T Consensus 294 ~~~~~~~~~~~~~~--~~--------------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~------~g~~~~ 350 (399)
T TIGR00893 294 IAGLVLSLLMFATN--YV--------------NIPYAALALVALGFFGLG-AGAIGWALISDNAPGNI------AGLTGG 350 (399)
T ss_pred HHHHHHHHHHHHhc--cc--------------hhHHHHHHHHHHHHhchh-hhhHHHHHHHhhcChhH------HHHHHH
Confidence 11 111111110 00 012333333333344444 78899999999999998 999999
Q ss_pred hhHHHHhhhhHHHhhhhhhcccccc-hhhhHHHHHHHHHHHHHHHH
Q 045562 196 WWYFGMCMGTFVTLTVLNYIQDNLN-WILGFGIPCILMVIALVVFL 240 (525)
Q Consensus 196 ~~~~~~~~g~~~gp~~~~~l~~~~g-~~~~f~~~~~~~~~~~~~~~ 240 (525)
+.+...++|..++|.+.+++.+..| |+..|.+.++..+++.+..+
T Consensus 351 ~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 396 (399)
T TIGR00893 351 LINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSYL 396 (399)
T ss_pred HHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988 99999887776666555443
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=5.6e-12 Score=131.66 Aligned_cols=167 Identities=15% Similarity=0.070 Sum_probs=129.9
Q ss_pred HHHHHHHHHHHHHHHHHhccccCCChH---HHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHHHHHHHHHH
Q 045562 50 MAERFAYYGVSSNLITYLTGPLAQSTA---TAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVLGLGLLTL 126 (525)
Q Consensus 50 ~~~~~~~y~~~~~l~~yl~~~lg~s~~---~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~~~~~l~~~ 126 (525)
+........+.++++.|+.+..+.... ..+.+.....++..++.+..|+++||+ |||+.+..+..+..++.+.+..
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~ 307 (408)
T PRK09874 229 LIIQVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRI-GPEKILITALIFSVLLLIPMSF 307 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccchhHHHHHHHHHHHHHHHHH
Confidence 334444455667788888765443222 234555566777888889999999998 9999999888777766665554
Q ss_pred hhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhhHHHHhhhhH
Q 045562 127 SAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWYFGMCMGTF 206 (525)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ 206 (525)
..+ .+.+++.+++.|++.+...|...+++.+..|+++ |++.+++++....+|..
T Consensus 308 ~~~--------------------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~g~~ 361 (408)
T PRK09874 308 VQT--------------------PLQLGILRFLLGAADGALLPAVQTLLVYNSSNQI------AGRIFSYNQSFRDIGNV 361 (408)
T ss_pred hcc--------------------HHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCccc------ceeeehHHHHHHHHHHH
Confidence 432 4667778889999999999999999989899888 99999999999999999
Q ss_pred HHhhhhhhcccccchhhhHHHHHHHHHHHHHHHHhcc
Q 045562 207 VTLTVLNYIQDNLNWILGFGIPCILMVIALVVFLLGT 243 (525)
Q Consensus 207 ~gp~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~ 243 (525)
+||.++|++.+++||+..|++.+++.+++.+..+...
T Consensus 362 ~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~ 398 (408)
T PRK09874 362 TGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWNSL 398 (408)
T ss_pred hhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998877777666554433
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.2e-11 Score=129.08 Aligned_cols=178 Identities=10% Similarity=0.027 Sum_probs=138.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHHHH
Q 045562 41 SALFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVLG 120 (525)
Q Consensus 41 ~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~~~ 120 (525)
..+.+....++....++++..++|.|+.+ +|.+..+.+...+.+.++..++.++.|+++||+ |||+.++.+..+..++
T Consensus 206 ~~~~l~~~~~~~~~~~~~~~~~lp~~l~~-~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~-~~~~~~~~~~~l~~~~ 283 (393)
T PRK09705 206 RAWTLGVYFGLINGGYASLIAWLPAFYIE-IGASAQYSGSLLALMTLGQAAGALLMPAMARHQ-DRRKLLMLALVLQLVG 283 (393)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhc-cchHHHHHHHHHHHHH
Confidence 45555566666778888899999999985 799999999999999999999999999999998 9999998887777666
Q ss_pred HHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhcccc-CCCcccccccceehhhhHH
Q 045562 121 LGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFD-SQHPLESKLKSSFFNWWYF 199 (525)
Q Consensus 121 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~-~~~~~~~~~r~~~~~~~~~ 199 (525)
..++..... +.... ..++.|++.+...|.......+.++ +++ |++.+++.+.
T Consensus 284 ~~~~~~~~~-------------------~~~~~--~~~l~g~g~g~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~ 336 (393)
T PRK09705 284 FCGFIWLPL-------------------QLPVL--WAMVCGLGLGGAFPLCLLLALDHSVQPAI------AGKLVAFMQG 336 (393)
T ss_pred HHHHHHccc-------------------hHHHH--HHHHHHHhccchHHHHHHHHHhhcCCHHH------HHHHHHHHHH
Confidence 654442221 01112 1245678888888877777778886 445 8999999999
Q ss_pred HHhhhhHHHhhhhhhcccccc-hhhhHHHHHHHHHHHHHHHHhccccee
Q 045562 200 GMCMGTFVTLTVLNYIQDNLN-WILGFGIPCILMVIALVVFLLGTKIYR 247 (525)
Q Consensus 200 ~~~~g~~~gp~~~~~l~~~~g-~~~~f~~~~~~~~~~~~~~~~~~~~~~ 247 (525)
..+++..++|.+.|++.|+.| |...|.+..+..++.++..+...++.+
T Consensus 337 ~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (393)
T PRK09705 337 IGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAPARF 385 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccccc
Confidence 999999999999999999886 888888877776666666555555433
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.7e-12 Score=129.60 Aligned_cols=182 Identities=16% Similarity=0.163 Sum_probs=151.1
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhcc-chHHHHHH-HHHH
Q 045562 39 WRSALFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFL-GRYRAIII-ASLI 116 (525)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~-Grr~~~~~-~~~~ 116 (525)
-|.+|.+.+..++.-..-|++..|.|.|+.|..|+|..++++..+.+-.+...++++.||+|||+. |||....+ +++.
T Consensus 251 Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~ 330 (448)
T COG2271 251 NKLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLL 330 (448)
T ss_pred ChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHH
Confidence 467899999999999999999999999999999999999999999999999999999999999997 66665544 3444
Q ss_pred HHHHHHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhh
Q 045562 117 YVLGLGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNW 196 (525)
Q Consensus 117 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 196 (525)
..++.+......+ .+..+..+..+++|+..-+.+-..-....|..|++- .|++.|+
T Consensus 331 i~~~~~~~w~~~~------------------~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~A------aGtA~Gf 386 (448)
T COG2271 331 ITASLVLYWLAPN------------------GSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKA------AGTATGF 386 (448)
T ss_pred HHHHHHHHHcCCC------------------ccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhh------ccchhch
Confidence 5555555555432 236777788888888877766666777789999988 8999999
Q ss_pred hHHHHhh-hhHHHhhhhhhcccccchhhhHHHHHHHHHHHHHHHHhccc
Q 045562 197 WYFGMCM-GTFVTLTVLNYIQDNLNWILGFGIPCILMVIALVVFLLGTK 244 (525)
Q Consensus 197 ~~~~~~~-g~~~gp~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~ 244 (525)
......+ |...+....+++.|.+||...|.+..+..+++.+.++...+
T Consensus 387 ~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~~~~~ 435 (448)
T COG2271 387 VGLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLAILLLLPVWN 435 (448)
T ss_pred hhhHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHHHHHHHHh
Confidence 8888877 99999999999999999999999888777777666655544
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.9e-12 Score=133.82 Aligned_cols=181 Identities=13% Similarity=0.045 Sum_probs=123.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhcc--chHHHHHHHHHHH
Q 045562 40 RSALFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFL--GRYRAIIIASLIY 117 (525)
Q Consensus 40 ~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~--Grr~~~~~~~~~~ 117 (525)
+.++.+.+..+......+.+..++|.|+.+++|++..+.+...+.+.++..++.+++|+++||+. +|++......+..
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~ 322 (434)
T PRK11663 243 PYIWLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGI 322 (434)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHH
Confidence 34566666666666777778889999998889999999999999999999999999999999982 2333322222111
Q ss_pred HHHHHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhh
Q 045562 118 VLGLGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWW 197 (525)
Q Consensus 118 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 197 (525)
.+..+.+..... .+........+..|++............+|.+|+++ |+++.++.
T Consensus 323 ~~~~~~~~~~~~------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~ 378 (434)
T PRK11663 323 LLSVGSLWLMPF------------------ASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEA------AGAATGFV 378 (434)
T ss_pred HHHHHHHHHccc------------------ccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhh------HHhHHHHH
Confidence 222221111111 002222233333444332222233456689998888 99999999
Q ss_pred HHHHhhhhHHHhhhhhhcccccchhhhHHHHHHHHHHHHHHHHhccc
Q 045562 198 YFGMCMGTFVTLTVLNYIQDNLNWILGFGIPCILMVIALVVFLLGTK 244 (525)
Q Consensus 198 ~~~~~~g~~~gp~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~ 244 (525)
+...++|..++|.+.|++.+..||+..|++.+++.+++.+..+...|
T Consensus 379 ~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~ 425 (434)
T PRK11663 379 GLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLLPFLN 425 (434)
T ss_pred HHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999888776666554444333
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.5e-10 Score=117.30 Aligned_cols=344 Identities=14% Similarity=0.093 Sum_probs=194.7
Q ss_pred HHHHHHHhccccCC---Ch----HHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 045562 60 SSNLITYLTGPLAQ---ST----ATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVLGLGLLTLSAVLLS 132 (525)
Q Consensus 60 ~~~l~~yl~~~lg~---s~----~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~~~~~l~~~~~~~~~ 132 (525)
..++|+|+++..+. ++ +..+...++..+..++..|+.|.++|+..-||+.+-....+.++..+++++..+
T Consensus 35 t~ifply~~~~~~~~g~~~~~~~a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~--- 111 (438)
T COG2270 35 TFIFPLYFTSVAGAGGVDPASSTAYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPP--- 111 (438)
T ss_pred eehhHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCC---
Confidence 45678888766554 33 344566677788888999999999999844555665666666667666666642
Q ss_pred CCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhhHHHHhhhhHHHhhhh
Q 045562 133 GSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWYFGMCMGTFVTLTVL 212 (525)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~ 212 (525)
...++..+....+..++..+......++..|..++++ .++..+.-+....+|+.+.-++.
T Consensus 112 --------------~s~~~~~l~~~il~~i~~~~s~Vfyds~L~~~~~k~~------~~riS~lg~~~gylgs~i~li~~ 171 (438)
T COG2270 112 --------------GSYLLLLLLFLILASIGFEFSNVFYDSMLPRLTTKDN------MGRISGLGWALGYLGSVILLIFV 171 (438)
T ss_pred --------------CchHHHHHHHHHHHHHhcchhheehhhHhhhhcCccc------cCcccccccccccccchHHHHHH
Confidence 0125666666677888888889999999999999887 44544444444555555544432
Q ss_pred --hh-cc---------------cccchhhhHHHHHHHHHHHHHHHHhcccceeecC-CCCCCchhhhHHHHHHHHHhccc
Q 045562 213 --NY-IQ---------------DNLNWILGFGIPCILMVIALVVFLLGTKIYRYSL-KGEEKSPFLRIGQVFVTAVRNWR 273 (525)
Q Consensus 213 --~~-l~---------------~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 273 (525)
+. .. +...-|.++.+.++-.++..+-.++..++.++.+ +.. +.. .+. .+
T Consensus 172 ~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iPm~~~v~~~~~~~~~~~--~~l---~~g----~k--- 239 (438)
T COG2270 172 VLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALPMILNVHDAEKISSPPP--TAL---RNG----FK--- 239 (438)
T ss_pred HHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhHHHhcccccccccccch--HHH---HHH----HH---
Confidence 11 11 2234566666666554443332333222222111 111 111 010 00
Q ss_pred cCCchhhhHhhhhCCCCCCCccchhhhhHHHhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccchhh
Q 045562 274 ITPSAIALEEEARGTLPHQSSEQFKFLNKALLASNGSKGYGKVCSVGEVEEAKALLRLVPIWTTCLVYAIVFAQSSTFFT 353 (525)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (525)
+... +.+|.++--....+++.-+.+- ....+.+.
T Consensus 240 ------------------------------------------~L~~-t~k~i~~~~~i~~FLiA~~~~~---DGv~til~ 273 (438)
T COG2270 240 ------------------------------------------ELKS-TFKEIRGRKNLVLFLIARFFYI---DGVNTILA 273 (438)
T ss_pred ------------------------------------------HHHH-HHHHHhcccchHHHHHHHHHHH---hhHHHHHH
Confidence 0000 1111111111111111111111 11122211
Q ss_pred hhhhccccCcccccccChhh---hhhhhhHHHHHHHHhhhhhhhhhhhhhccCCCCCCchHHHHHHHHHHHHHHHHHHHH
Q 045562 354 KQGVTMDRSVVADFQIPAAS---LQSFISLAIVLTIPIYDRIFVPIARTFTRKPAGITMLQRIGTGMFLSAASMTGATLV 430 (525)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~~~~l~~~~~~~l~~r~~~~~~~~~~~~~i~ig~~l~~i~~~~~~~~ 430 (525)
.-...-... +++.... +.....++.+++..+++ .+.+|++-| +.+.+++++..+..+.....
T Consensus 274 ~~~~fg~~~----~gls~~~lll~g~~~~vvA~lg~ii~g----~Ld~rfg~k-------~vl~~~lvi~~~~~~~~~~~ 338 (438)
T COG2270 274 MGGVFGAAD----LGLSSTELLLIGIALSVVAALGAIIAG----FLDERFGSK-------PVLMIGLVILSIAALYLIFL 338 (438)
T ss_pred HHHHHHHHH----cCccHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhCCc-------eeehHHHHHHHHHHHHHHHc
Confidence 111000001 1222111 12222233333333333 367776544 67777887777766655543
Q ss_pred HHHHHhhhhhcCCcCCCCCCccchHHHHHHHHHHHHHHHHHHhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHH
Q 045562 431 EMKRLKTAEEYGLVDKPNVTIPMSVWWLIPQYALLGVSEAFTMVGLQEFFYDQVPTELRSVGLSLYLSIFGVGSFLSSFL 510 (525)
Q Consensus 431 ~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~~~ 510 (525)
+ ... -....-++.|+..+-.....-++..+.+|++..++..|+|++....++++||++
T Consensus 339 ~---------------------~~~-~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~l 396 (438)
T COG2270 339 E---------------------GEL-DFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFL 396 (438)
T ss_pred c---------------------ccH-HHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHH
Confidence 2 122 223344677888888899999999999999999999999999999999999999
Q ss_pred HHHhhhhccCC
Q 045562 511 ISAIENATGGD 521 (525)
Q Consensus 511 ~~~i~~~~~~~ 521 (525)
.+.+.+.||+.
T Consensus 397 v~v~t~iTg~~ 407 (438)
T COG2270 397 VAVITQITGSS 407 (438)
T ss_pred HHHHHHHhcch
Confidence 99999999873
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.6e-12 Score=134.16 Aligned_cols=178 Identities=11% Similarity=0.132 Sum_probs=135.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccCCC--------hHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHH
Q 045562 43 LFIIGVEMAERFAYYGVSSNLITYLTGPLAQS--------TATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIAS 114 (525)
Q Consensus 43 ~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s--------~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~ 114 (525)
+..+...++..........+++.|+. +.|.+ ....+...+...+...++.++.|+++||+ |||+++..+.
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~-g~r~~l~~~~ 288 (418)
T TIGR00889 211 AIFFFFSMLLGAPLQITNIFGNGFLH-EFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRF-GIKKVMLLSL 288 (418)
T ss_pred eeHHHHHHHHHhHHHHHHHhHHHHHH-HhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHH
Confidence 33444444444444445577788876 34544 35668888888889999999999999999 9999999999
Q ss_pred HHHHHHHHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceeh
Q 045562 115 LIYVLGLGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFF 194 (525)
Q Consensus 115 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 194 (525)
++..++..++..... ++...+.+++.+++.|++.+...++...++.|.+|+++ |++++
T Consensus 289 ~~~~v~~~l~~~~~~----------------~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~------~g~~~ 346 (418)
T TIGR00889 289 VAWALRFGFFAYGDP----------------EYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHI------RASAQ 346 (418)
T ss_pred HHHHHHHHHHHHcCc----------------chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HHHHH
Confidence 888887766665321 00124566778889999998888888999999999988 99999
Q ss_pred hhhH-HHHhhhhHHHhhhhhhcccc------cchhhhHHHHHHHHHHHHHHHHhccc
Q 045562 195 NWWY-FGMCMGTFVTLTVLNYIQDN------LNWILGFGIPCILMVIALVVFLLGTK 244 (525)
Q Consensus 195 ~~~~-~~~~~g~~~gp~~~~~l~~~------~g~~~~f~~~~~~~~~~~~~~~~~~~ 244 (525)
++.+ ....+|..+||.++|++.++ +||+.+|.+.+++.+++.+.++...+
T Consensus 347 g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~ 403 (418)
T TIGR00889 347 GLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFK 403 (418)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9997 56789999999999999887 46999998887776665555554444
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.4e-12 Score=135.40 Aligned_cols=164 Identities=12% Similarity=0.105 Sum_probs=128.4
Q ss_pred HHHHHHHHHHHHHHHHhcccc---CCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHh
Q 045562 51 AERFAYYGVSSNLITYLTGPL---AQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVLGLGLLTLS 127 (525)
Q Consensus 51 ~~~~~~y~~~~~l~~yl~~~l---g~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~~~~~l~~~~ 127 (525)
.....+.....++|.|+.+.+ +.+..+.+.+.+...+...++.+++|+++||+ |||+.+..+.++..++..++.+.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~l~~~~~~l~~~~ 312 (420)
T PRK09528 234 GVACFYDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRI-GAKNALLLAGTIMAVRIIGSGFA 312 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcchhhHHHHHHHHHHHHHHHhc
Confidence 333333344455677765443 56667788888888888999999999999999 99999998888888877777665
Q ss_pred hhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhh-hHHHHhhhhH
Q 045562 128 AVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNW-WYFGMCMGTF 206 (525)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~~g~~ 206 (525)
.+ .+.+++.+++.+++.+...+....++.|.+|++. |++.++. ++....+|..
T Consensus 313 ~~--------------------~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~a~~~~~~~~~~~~lg~~ 366 (420)
T PRK09528 313 TG--------------------PLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRL------SATIYLVGFQFAKQLGAV 366 (420)
T ss_pred cc--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc------eeeeeeehHHHHHHHHHH
Confidence 43 5667778888888888777777888999999887 8888766 6777889999
Q ss_pred HHhhhhhhcccccchhhhHHHHHHHHHHHHHHHHh
Q 045562 207 VTLTVLNYIQDNLNWILGFGIPCILMVIALVVFLL 241 (525)
Q Consensus 207 ~gp~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~ 241 (525)
++|.+.|++.+.+||+.+|.+.+++.++..++.+.
T Consensus 367 ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~ 401 (420)
T PRK09528 367 FLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVF 401 (420)
T ss_pred HHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999877666655544443
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.7e-12 Score=140.65 Aligned_cols=134 Identities=9% Similarity=0.002 Sum_probs=108.9
Q ss_pred HHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHH
Q 045562 81 NVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVLGLGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLI 160 (525)
Q Consensus 81 ~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 160 (525)
......++..++.+++|+++||+ |||++++++.++.+++.+++++..+ ...+++.+++.
T Consensus 600 ~~~l~~l~~i~G~il~g~L~Dr~-GRr~~l~~~~~lsai~~ll~~~~~s--------------------~~~ll~~~~l~ 658 (742)
T TIGR01299 600 VNFLGTLAVLPGNIVSALLMDKI-GRLRMLAGSMVLSCISCFFLSFGNS--------------------ESAMIALLCLF 658 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHHcc--------------------HHHHHHHHHHH
Confidence 34455678889999999999998 9999999998888888877776543 34566667777
Q ss_pred HhccccCccchhhhhhccccCCCcccccccceehhhhHHHHhhhhHHHhhhhhhcccccchhhhHHHHHHHHHHHHHHHH
Q 045562 161 ALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWYFGMCMGTFVTLTVLNYIQDNLNWILGFGIPCILMVIALVVFL 240 (525)
Q Consensus 161 g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~ 240 (525)
+++.++..+...++++|++|+++ |++++|+.+....+|+++||.+++.+.+. +...+|++.+++.+++.++.+
T Consensus 659 g~~~~~~~~~~~a~~aEl~Pt~~------Rgta~Gi~~~~~rlGaiigp~i~g~L~~~-~~~~pf~i~a~~lll~~ll~~ 731 (742)
T TIGR01299 659 GGLSIAAWNALDVLTVELYPSDK------RATAFGFLNALCKAAAVLGILIFGSFVGI-TKAAPILFASAALACGGLLAL 731 (742)
T ss_pred HHHHHHHHHHHHHHHHHHcCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHH
Confidence 87777778889999999999998 99999999999999999999999988764 466778877777666655555
Q ss_pred hc
Q 045562 241 LG 242 (525)
Q Consensus 241 ~~ 242 (525)
+.
T Consensus 732 ~L 733 (742)
T TIGR01299 732 KL 733 (742)
T ss_pred hC
Confidence 44
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=2e-11 Score=127.12 Aligned_cols=174 Identities=11% Similarity=-0.046 Sum_probs=134.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHHHHH
Q 045562 42 ALFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVLGL 121 (525)
Q Consensus 42 ~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~~~~ 121 (525)
.+......++.....++...+++.|+.+..|.|..+.+++.....++..++.++.|+++||+ |||+.+ .+..+..++.
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-~~~~~~-~~~~~~~~~~ 284 (390)
T PRK03545 207 LVSLYLLTVVVVTAHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRH-PSGFLL-IAIALLLVCL 284 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhcc-chhHHH-HHHHHHHHHH
Confidence 44444445555566666677888899888999999999999999999999999999999998 988654 4444444433
Q ss_pred HHH-HHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhhHHH
Q 045562 122 GLL-TLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWYFG 200 (525)
Q Consensus 122 ~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 200 (525)
.+. .... +.+.+++..++.|++.+...+...+.+.+..| ++ |++++++++..
T Consensus 285 ~~l~~~~~--------------------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~------~~~~~g~~~~~ 337 (390)
T PRK03545 285 LLLLPAAN--------------------SEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAP-DA------TDVAMALFSGI 337 (390)
T ss_pred HHHHHHhc--------------------hHHHHHHHHHHHHHHHhcchHHHHHHHHHhCC-Cc------HHHHHHHHHHH
Confidence 332 2222 14566677778888888777777888888766 45 88999999999
Q ss_pred HhhhhHHHhhhhhhcccccchhhhHHHHHHHHHHHHHHHHhccc
Q 045562 201 MCMGTFVTLTVLNYIQDNLNWILGFGIPCILMVIALVVFLLGTK 244 (525)
Q Consensus 201 ~~~g~~~gp~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~ 244 (525)
..+|..+||.++|++.+++|++..|++.+.+.+++++..+...+
T Consensus 338 ~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 381 (390)
T PRK03545 338 FNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSILIFR 381 (390)
T ss_pred HHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHcc
Confidence 99999999999999999999999999998888887777666554
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.6e-11 Score=128.40 Aligned_cols=171 Identities=14% Similarity=0.049 Sum_probs=131.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHHHHHH
Q 045562 43 LFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVLGLG 122 (525)
Q Consensus 43 ~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~~~~~ 122 (525)
+.+....+......+.+..++|.|+.+ .|.+..+.+.......++..++.++.|+++||+ |||+.+..+.+...++..
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~ 300 (406)
T PRK11551 223 LLLWISYFFTLIVLYFLLNWLPSLLVG-QGLSRSQAGLVQIAFNIGGALGSLLIGALMDRL-RPRRVVLLIYAGILASLA 300 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHH
Confidence 333344455556677778889999874 799999999999999999999999999999998 999998887666655555
Q ss_pred HHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhhHHHHh
Q 045562 123 LLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWYFGMC 202 (525)
Q Consensus 123 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 202 (525)
++....+ .+.+++..++.|++.++..+..+++..|.+|+++ |+++.++.+....
T Consensus 301 ~~~~~~~--------------------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~ 354 (406)
T PRK11551 301 ALAAAPS--------------------FAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQV------RGTGVGAAVAVGR 354 (406)
T ss_pred HHHhcCc--------------------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhh------hhhhhhHHHHhhh
Confidence 4444322 3445556667788777777888999999999998 9999999999999
Q ss_pred hhhHHHhhhhhhcccccc-hhhhHHHHHHHHHHHHHHHHh
Q 045562 203 MGTFVTLTVLNYIQDNLN-WILGFGIPCILMVIALVVFLL 241 (525)
Q Consensus 203 ~g~~~gp~~~~~l~~~~g-~~~~f~~~~~~~~~~~~~~~~ 241 (525)
+|..+||.+.|++.++.+ |...+++.+...+++.+..+.
T Consensus 355 ~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (406)
T PRK11551 355 LGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAALL 394 (406)
T ss_pred HHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999988654 666666665555555444443
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.35 E-value=4.6e-12 Score=120.71 Aligned_cols=371 Identities=15% Similarity=0.151 Sum_probs=215.6
Q ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHHH
Q 045562 42 ALFIIGVEMAERFAYYGVS--SNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVL 119 (525)
Q Consensus 42 ~~~~~~~~~~~~~~~y~~~--~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~~ 119 (525)
...+.+.++...-+|+..- .-+..+...+.+.+.++..++.+.|+....+.++++||+.||..|-|..-++-+++..+
T Consensus 43 ~m~lv~mc~lgfgsyfcyd~p~alq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~ 122 (459)
T KOG4686|consen 43 FMALVFMCLLGFGSYFCYDAPGALQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFL 122 (459)
T ss_pred HHHHHHHHHhcccceeecCCchhhhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHH
Confidence 4444444444333333222 33456666667777778888899999999999999999999988888777766666677
Q ss_pred HHHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhhHH
Q 045562 120 GLGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWYF 199 (525)
Q Consensus 120 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 199 (525)
|.+.++.-. +.+++|.+.++|++.|+|.--...+.+.++.-+|..++ ...++|+...
T Consensus 123 GqliFa~Gg-----------------i~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKE------Ln~vfGlqlS 179 (459)
T KOG4686|consen 123 GQLIFAAGG-----------------ISHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKE------LNFVFGLQLS 179 (459)
T ss_pred HHHHHHhch-----------------HHHHHHHHHhhheeeccCchhhhhhhcceeEEEecCcc------ccchhhHHHH
Confidence 776665432 12458999999999999987777888999999999999 9999999999
Q ss_pred HHhhhhHHHhhhhhhcccccchhhhHHHHHHHHHHHHHHHHhcccceeecCCCCCCchhhhHHHHHHHHHhccccCC-ch
Q 045562 200 GMCMGTFVTLTVLNYIQDNLNWILGFGIPCILMVIALVVFLLGTKIYRYSLKGEEKSPFLRIGQVFVTAVRNWRITP-SA 278 (525)
Q Consensus 200 ~~~~g~~~gp~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 278 (525)
+..+|+.+-..+.+++.+..+--.+ ...-..+++..++-... . +.+.+......+.... ++
T Consensus 180 vAR~GstvNf~lm~~ly~~~~~~~~---~~ghT~LG~~l~~~~~t--c-------------~~slical~lg~~D~rAer 241 (459)
T KOG4686|consen 180 VARLGSTVNFLLMPFLYDTMGRMFP---GVGHTLLGLWLCFEVKT--C-------------KQSLICALSLGLSDDRAER 241 (459)
T ss_pred HHHhhceeeeeecHHHHHHHHHhcc---cchHHHHHHHHHHHHHH--H-------------HHHHHHHHHhhhhhhHHHH
Confidence 9999999888888888775541111 11111111111111100 0 0000000000000000 00
Q ss_pred hhhHhhhhCCCCCCCccchhhhhHHHhhcCCCCCCCcccchhhHHH-HHHHHHHHHHHHHHHHHHHHHhhccchhhhhhh
Q 045562 279 IALEEEARGTLPHQSSEQFKFLNKALLASNGSKGYGKVCSVGEVEE-AKALLRLVPIWTTCLVYAIVFAQSSTFFTKQGV 357 (525)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (525)
+...++ |. .++.+.. . .++. ...++....+++...+.|..|......+...
T Consensus 242 ilh~e~--g~-------------------~Ge~pkL---t--dv~~f~ppfw~~~iicv~yyva~fPFi~lg~~fF~~-- 293 (459)
T KOG4686|consen 242 ILHLEE--GF-------------------LGEEPKL---T--DVNTFYPPFWVLVIICVLYYVAWFPFITLGPMFFQK-- 293 (459)
T ss_pred HHhhhc--Cc-------------------ccCCccc---c--cccccCccHHHHHHHHHHHHHHHHHHhhhhHHHHHH--
Confidence 000000 00 0000000 0 0000 1122333333333334444444443322221
Q ss_pred ccccCcccccccChhhhhhhhhHHHHHHHHhhhhhhhhhhhhhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 045562 358 TMDRSVVADFQIPAASLQSFISLAIVLTIPIYDRIFVPIARTFTRKPAGITMLQRIGTGMFLSAASMTGATLVEMKRLKT 437 (525)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~l~~r~~~~~~~~~~~~~i~ig~~l~~i~~~~~~~~~~~~~~~ 437 (525)
.+|. .....+.+.+..-....+..|+++. +.||.|++ ...+..+.++...+=....+.
T Consensus 294 ----rfGl-S~~~a~~i~s~vy~Isav~spvfg~----i~Dk~G~n------~~wv~~a~~~tl~~H~~l~Ft------- 351 (459)
T KOG4686|consen 294 ----RFGL-SAVSAGNILSTVYGISAVLSPVFGA----ISDKYGFN------LWWVASACILTLLGHSGLFFT------- 351 (459)
T ss_pred ----hhCC-ChhhccchhhhhhhhhhhhhhhHHH----hHhhhcce------ehhHHHHHHHHHHHhhhHHhh-------
Confidence 1111 1112222344444556667888877 56777665 133344444333332222221
Q ss_pred hhhcCCcCCCCCCccchHHHHHHHHHHHHHHHHHHhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 045562 438 AEEYGLVDKPNVTIPMSVWWLIPQYALLGVSEAFTMVGLQEFFYDQVPTELRSVGLSLYLSIFGVGSFLSSFLISAIENA 517 (525)
Q Consensus 438 ~~~~g~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~~~~~~i~~~ 517 (525)
..++ ...+.+.|++..+..-..+..+...+|++.-|++-|..+..+++|-.+.+.++|.+.+.
T Consensus 352 --------------~lsP---y~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~ 414 (459)
T KOG4686|consen 352 --------------FLSP---YTSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADG 414 (459)
T ss_pred --------------hccH---HHHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecC
Confidence 1233 34567778888888888899999999999999999999999999999999999998876
Q ss_pred ccC
Q 045562 518 TGG 520 (525)
Q Consensus 518 ~~~ 520 (525)
-|+
T Consensus 415 ~g~ 417 (459)
T KOG4686|consen 415 DGS 417 (459)
T ss_pred CCc
Confidence 543
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.5e-10 Score=116.79 Aligned_cols=268 Identities=10% Similarity=0.033 Sum_probs=154.6
Q ss_pred hhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhhHHHHhhhhHHHhhhhhhcccc---------
Q 045562 148 FQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWYFGMCMGTFVTLTVLNYIQDN--------- 218 (525)
Q Consensus 148 ~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l~~~--------- 218 (525)
.++..++++.++.|.|.+...++.++++++..|+++ +.+.+++.+....+|..++|.+++.+...
T Consensus 8 ~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~------~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~ 81 (310)
T TIGR01272 8 RYYVLFLGALFVLASGLTILQVAANPYVSILGPIET------AASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQV 81 (310)
T ss_pred hHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcch------HHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhh
Confidence 347889999999999999999999999999999888 89999999999999999999999976631
Q ss_pred -------cchhhhHHHHHHHHHHHHHHHHhc-ccceeecCCCCCCchhhhHHHHHHHHHhccccCCchhhhHhhhhCCCC
Q 045562 219 -------LNWILGFGIPCILMVIALVVFLLG-TKIYRYSLKGEEKSPFLRIGQVFVTAVRNWRITPSAIALEEEARGTLP 290 (525)
Q Consensus 219 -------~g~~~~f~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (525)
.+|+.+|++.+.+.++..+.+... .++ .++++. +..
T Consensus 82 ~~~~~~~~~~~~~yl~ia~~~~~~~i~~~~~~~p~---~~~~~~-~~~-------------------------------- 125 (310)
T TIGR01272 82 ATANAEAAKVHTPYLLLAGALAVLAIIFAFLPLPE---LQEADV-ARV-------------------------------- 125 (310)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHccCCC---CCcccc-ccc--------------------------------
Confidence 468999986554433333333222 121 111110 000
Q ss_pred CCCccchhhhhHHHhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHH-HHhhccchhhhhhhccccCccccccc
Q 045562 291 HQSSEQFKFLNKALLASNGSKGYGKVCSVGEVEEAKALLRLVPIWTTCLVYAI-VFAQSSTFFTKQGVTMDRSVVADFQI 369 (525)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (525)
.+.+ . ..+.....++.++.. .....+|. .......+...+-... ...+. ...
T Consensus 126 -~~~~-----------------~---~~~~~~~~~~~~~l~----~~~~f~yvg~e~~~~~w~~~yl~~~-~~~g~-s~~ 178 (310)
T TIGR01272 126 -SSGD-----------------T---TQKTSAFQFTHLVLG----ALGIFVYVGAEVSAGSFLVNFLSDP-HALGL-PED 178 (310)
T ss_pred -cccc-----------------c---cchhhHHhhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhc-ccCCC-CHH
Confidence 0000 0 000001112222211 11111222 1112222222221100 01111 111
Q ss_pred ChhhhhhhhhHHHHHHHHhhhhhhhhhhhhhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCcCCCCC
Q 045562 370 PAASLQSFISLAIVLTIPIYDRIFVPIARTFTRKPAGITMLQRIGTGMFLSAASMTGATLVEMKRLKTAEEYGLVDKPNV 449 (525)
Q Consensus 370 ~~~~~~~~~~~~~i~~~~l~~~~~~~l~~r~~~~~~~~~~~~~i~ig~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~ 449 (525)
..+.....+....++...+. .++.+|++ +++.+.++.++..+..++....
T Consensus 179 ~a~~~~s~~~~~~~iGr~~~----~~l~~r~g-------~~~~l~~~~~l~~~~~~l~~~~------------------- 228 (310)
T TIGR01272 179 QAAHFTAYTWGGAMVGRFIG----SAVMPMIS-------QGRYLAFNAFLAVLLSIGAALT------------------- 228 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHhC-------HHHHHHHHHHHHHHHHHHHHHc-------------------
Confidence 11223333333333333333 34667754 3366667766666655444331
Q ss_pred CccchHHHHHHHHHHHHHHHHHHhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC
Q 045562 450 TIPMSVWWLIPQYALLGVSEAFTMVGLQEFFYDQVPTELRSVGLSLYLSIFGVGSFLSSFLISAIENATGG 520 (525)
Q Consensus 450 ~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~~~~~~i~~~~~~ 520 (525)
.+ .+.....++.+++.+..+|+..+...+..|++ .++++++. ....+|+.+.|.+.|.+.|..|-
T Consensus 229 ---~~-~~~~~~~~l~g~~~s~i~P~~~s~a~~~~~~~-~~~asai~-~~~~~Gg~i~P~l~G~lad~~g~ 293 (310)
T TIGR01272 229 ---HG-YVAMWFVLALGLFNSIMFPTIFSLALNALGRH-TSQGSGIL-CLAIVGGAIVPLLQGSLADCLGI 293 (310)
T ss_pred ---CC-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-hhhhHHHH-HHHHhcchHHHHHHHHHHHhccc
Confidence 11 22233556789999999999999999988875 56777875 56779999999999999997753
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.3e-12 Score=111.52 Aligned_cols=134 Identities=17% Similarity=0.314 Sum_probs=113.6
Q ss_pred HHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHh
Q 045562 83 NAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVLGLGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIAL 162 (525)
Q Consensus 83 ~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ 162 (525)
..+.++..++.++.|+++||+ |||+.+..+..+..++.+++....+ .+.+++.+++.|+
T Consensus 5 ~~~~~~~~~~~~~~g~~~d~~-g~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~g~ 63 (141)
T TIGR00880 5 AGYALGQLIYSPLSGLLTDRF-GRKPVLLVGLFIFVLSTAMFALSSN--------------------ITVLIIARFLQGF 63 (141)
T ss_pred EeehhHHHHHHhhHHHHHhhc-chhHHHHHHHHHHHHHHHHHHHhcc--------------------HHHHHHHHHHHHH
Confidence 345667788899999999998 9999999998888888777766533 5777888999999
Q ss_pred ccccCccchhhhhhccccCCCcccccccceehhhhHHHHhhhhHHHhhhhhhcccccchhhhHHHHHHHHHHHHHHHHhc
Q 045562 163 GQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWYFGMCMGTFVTLTVLNYIQDNLNWILGFGIPCILMVIALVVFLLG 242 (525)
Q Consensus 163 g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~ 242 (525)
+.+...+...+++.|.+|+++ |+++.++.+....+|..++|.+.+++.+..+|+..|.+..+..++..+.....
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (141)
T TIGR00880 64 GAAFALVAGAALIADIYPPEE------RGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFL 137 (141)
T ss_pred HHHHHHHhHHHHHHHHCChhh------hhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhc
Confidence 999989999999999999998 99999999999999999999999999998999999988776666655555443
Q ss_pred c
Q 045562 243 T 243 (525)
Q Consensus 243 ~ 243 (525)
.
T Consensus 138 ~ 138 (141)
T TIGR00880 138 L 138 (141)
T ss_pred C
Confidence 3
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.5e-11 Score=130.80 Aligned_cols=179 Identities=12% Similarity=0.082 Sum_probs=124.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhcc-chHHHH-HHHHHHH
Q 045562 40 RSALFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFL-GRYRAI-IIASLIY 117 (525)
Q Consensus 40 ~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~-Grr~~~-~~~~~~~ 117 (525)
+..|...+..++.....|++..++|.|+++..|++..+++.....+.++..++.+++|+++||+. |||+.. +....+.
T Consensus 253 ~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~ 332 (452)
T PRK11273 253 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLV 332 (452)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHH
Confidence 45666777777777788888899999999889999999998888888888999999999999972 333322 2222333
Q ss_pred HHHHHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhh
Q 045562 118 VLGLGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWW 197 (525)
Q Consensus 118 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 197 (525)
.++.+++..... .+....++..++.|.+.....+....+..|.+|++. |++++++.
T Consensus 333 ~~~~~~~~~~~~------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~ 388 (452)
T PRK11273 333 TIATIVYWLNPA------------------GNPTVDMACMIVIGFLIYGPVMLIGLHALELAPKKA------AGTAAGFT 388 (452)
T ss_pred HHHHHHHHHhcc------------------cChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhh------hhhHHHHH
Confidence 333332222111 012333334444454433322333456779999988 99999999
Q ss_pred HHHHhhhhHH-HhhhhhhcccccchhhhHHHHHHHHHHHHHHHHhc
Q 045562 198 YFGMCMGTFV-TLTVLNYIQDNLNWILGFGIPCILMVIALVVFLLG 242 (525)
Q Consensus 198 ~~~~~~g~~~-gp~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~ 242 (525)
+...++|+.+ +|.+.|++.+++||+..|.+.++..+++++.....
T Consensus 389 ~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~ 434 (452)
T PRK11273 389 GLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 434 (452)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 9888887654 89999999999999999988887766665554433
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.3e-11 Score=128.66 Aligned_cols=190 Identities=17% Similarity=0.211 Sum_probs=144.6
Q ss_pred CccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccch-HHHH
Q 045562 33 RSKYGGWRSALFIIGVEMAERFAYYGVSSNLITYLTG-PLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGR-YRAI 110 (525)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~-~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Gr-r~~~ 110 (525)
...+.+||.+++..+..+.....++.+.+..-+|+++ +.+.+.+..|++.++..+++.+..+..|+++.|. ++ |+-+
T Consensus 27 ~~~~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~-~~~k~Pl 105 (488)
T KOG2325|consen 27 DERKTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKT-GSVKKPL 105 (488)
T ss_pred cccCCchHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhccccccc-CCcccCH
Confidence 3346679999999999999888888888888889874 3677788899999999999999999999999998 74 6666
Q ss_pred HHHHHHHHHHHHHH-HHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccc
Q 045562 111 IIASLIYVLGLGLL-TLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKL 189 (525)
Q Consensus 111 ~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 189 (525)
+.+.++.++|.++. ++... +.. ..+.++++|++.|+|.|.. ...-+++++....++
T Consensus 106 i~s~ii~~~g~llY~~l~~~-~~~---------------~~y~mL~~R~l~Gvg~~n~-a~lR~Y~a~~s~~~d------ 162 (488)
T KOG2325|consen 106 IVSFLIAIIGNLLYLALAYV-PNG---------------VKYLMLVARILTGVGVGNF-AVLRAYIADASTVED------ 162 (488)
T ss_pred HHHHHHHHHHHHHHHHHHhc-ccc---------------hHHHHHHHHHHcCcCcccH-HHHHHHHHhccCccc------
Confidence 77888888888887 54433 211 3688999999999998874 466888888877777
Q ss_pred cceehhhhHHHHhhhhHHHhhhhhhc----ccc--------c-chhhhHHHHHHHHHHHHHHHHhcccce
Q 045562 190 KSSFFNWWYFGMCMGTFVTLTVLNYI----QDN--------L-NWILGFGIPCILMVIALVVFLLGTKIY 246 (525)
Q Consensus 190 r~~~~~~~~~~~~~g~~~gp~~~~~l----~~~--------~-g~~~~f~~~~~~~~~~~~~~~~~~~~~ 246 (525)
|.++++....+..+|..+||.+...+ .+. + -|..+-++.+++.++.++++....+|.
T Consensus 163 R~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~ 232 (488)
T KOG2325|consen 163 RPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEV 232 (488)
T ss_pred hHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeec
Confidence 89999988877777777777766443 111 1 245566677777677666655555443
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.8e-11 Score=127.48 Aligned_cols=162 Identities=16% Similarity=0.180 Sum_probs=130.5
Q ss_pred HHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhh
Q 045562 51 AERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVLGLGLLTLSAVL 130 (525)
Q Consensus 51 ~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~~~~~l~~~~~~~ 130 (525)
........+..+++.|+.+ .|.+. .+.....+.++..++.++.|++.||+ ||||.+..+..+..++.+++....+
T Consensus 227 l~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~~~~~~~~~~- 301 (392)
T PRK12382 227 LQGVGFAVIGTFVSLYFAS-KGWAM--AGFTLTAFGGAFVLMRVLFGWMPDRF-GGVKVAIVSLLVETVGLLLLWLAPT- 301 (392)
T ss_pred HHHHHHhHHHHHHHHHHHh-cCCch--hHHHHHHHHHHHHHHHHHHHHHHHhc-CCCeehHHHHHHHHHHHHHHHHccc-
Confidence 3445556667788888864 46553 45556667777888999999999998 9999999888888777766655432
Q ss_pred ccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhhHHHHhhhhHHHhh
Q 045562 131 LSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWYFGMCMGTFVTLT 210 (525)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~ 210 (525)
.+..++..++.|++.+...|...+.+.|.+|+++ |++++++++....+|..++|.
T Consensus 302 -------------------~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~~~g~~ig~~ 356 (392)
T PRK12382 302 -------------------AWVALAGAALTGAGCSLIFPALGVEVVKRVPSQV------RGTALGGYAAFQDIAYGVSGP 356 (392)
T ss_pred -------------------HHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 4556677888899988888888888899999888 999999999999999999999
Q ss_pred hhhhcccccchhhhHHHHHHHHHHHHHHHHhc
Q 045562 211 VLNYIQDNLNWILGFGIPCILMVIALVVFLLG 242 (525)
Q Consensus 211 ~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~ 242 (525)
+.+++.++.||+..|.+.+.+.+++.+..+..
T Consensus 357 ~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 388 (392)
T PRK12382 357 LAGMLATSFGYPSVFLAGAISAVLGIIVTILS 388 (392)
T ss_pred HHHHHHHHhCchHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999888777776665544
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.2e-11 Score=128.01 Aligned_cols=162 Identities=15% Similarity=0.050 Sum_probs=131.1
Q ss_pred HHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhccCCC
Q 045562 56 YYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVLGLGLLTLSAVLLSGST 135 (525)
Q Consensus 56 ~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 135 (525)
.+++..++|.|+++.+|.+..+.+++.+...++..++.++.|+++||. ++++.+..+..+..++.+++.+..+
T Consensus 239 ~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~------ 311 (417)
T PRK10489 239 ASAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSA-RPGLLMLLSTLGSFLAVGLFGLMPM------ 311 (417)
T ss_pred HHhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhcc-CcchHHHHHHHHHHHHHHHHHccch------
Confidence 345667899999988999999999999999999999999999999997 8888888887777777666654432
Q ss_pred CccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhhHHHHhhhhHHHhhhhhhc
Q 045562 136 SECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWYFGMCMGTFVTLTVLNYI 215 (525)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l 215 (525)
....++..++.|++.+...+...+++.|.+|++. |++++++++...++|..+||.+.|++
T Consensus 312 --------------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~~~g~~l~G~l 371 (417)
T PRK10489 312 --------------WILAVLCLALFGYLSAISSLLQYTLLQTQTPDEM------LGRINGLWTAQNVTGDAIGAALLGGL 371 (417)
T ss_pred --------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHH------HHHHHHHHHHHHhhhHhHHHHHHHHH
Confidence 4556667777888887777777889999999888 99999999999999999999999999
Q ss_pred ccccchhhhHHHHHHHHHHHHHHHHhccc
Q 045562 216 QDNLNWILGFGIPCILMVIALVVFLLGTK 244 (525)
Q Consensus 216 ~~~~g~~~~f~~~~~~~~~~~~~~~~~~~ 244 (525)
.+.+|++..+++.++..++..++.....+
T Consensus 372 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 400 (417)
T PRK10489 372 GAMMTPVASASASGFGLLIIGVLLLLVLG 400 (417)
T ss_pred HHHhchhhHHHHHHHHHHHHHHHHHHhcc
Confidence 99999988888776655554444433333
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.31 E-value=5e-11 Score=123.88 Aligned_cols=169 Identities=11% Similarity=-0.003 Sum_probs=142.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHHH
Q 045562 40 RSALFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVL 119 (525)
Q Consensus 40 ~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~~ 119 (525)
|+.+..+...++.....+...++.+.|+++ +|.+..+.+.+.+...+...+..++.|++.||+ |+|+.+.++.+...+
T Consensus 205 ~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~-~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~-g~~~~l~~~~~~~~~ 282 (382)
T TIGR00902 205 PMNLRFLAAVCLIQGAHAAYYGFSAIYWQA-AGISASATGLLWGIGVLAEIIIFAFSNKLFQNC-SARDLLLISAIACVG 282 (382)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhC-CHHHHHHHHHHHHHH
Confidence 456666666777777788888899999975 899999999999888889999999999999999 999999999999998
Q ss_pred HHHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhhH-
Q 045562 120 GLGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWY- 198 (525)
Q Consensus 120 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~- 198 (525)
...++.+.++ .+.+++...+.|+..+...+....++.+. |+++ |+++.++++
T Consensus 283 ~~~~~~~~~~--------------------~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~------~~~~q~~~~~ 335 (382)
T TIGR00902 283 RWAIIGAIEA--------------------FPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSE------IAKLQALYNA 335 (382)
T ss_pred HHHHHHhHhh--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhh------HHHHHHHHHH
Confidence 8888877654 67788889999999999999999999988 8777 888889876
Q ss_pred HHHhhhhHHHhhhhhhcccccchhhhHHHHHHHHHHHHHH
Q 045562 199 FGMCMGTFVTLTVLNYIQDNLNWILGFGIPCILMVIALVV 238 (525)
Q Consensus 199 ~~~~~g~~~gp~~~~~l~~~~g~~~~f~~~~~~~~~~~~~ 238 (525)
....+|..+||.++|++.|++|+ ..|++.+++.++++++
T Consensus 336 ~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~~ 374 (382)
T TIGR00902 336 LAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFFL 374 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHH
Confidence 46689999999999999999996 5677666665555443
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=4.7e-11 Score=123.96 Aligned_cols=153 Identities=15% Similarity=0.125 Sum_probs=120.8
Q ss_pred HHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 045562 53 RFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVLGLGLLTLSAVLLS 132 (525)
Q Consensus 53 ~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~~~~~l~~~~~~~~~ 132 (525)
...+.....++|.|+++ .|.+..+.+...+...+...+++++.|+++||+ |||+++..+..+..++..... .
T Consensus 213 ~~~~~~~~~~lp~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-~~~~~l~~~~~~~~~~~~~~~-~----- 284 (381)
T PRK03633 213 GIVLGSLYGLMPLYLNH-QGMSDASIGFWMALLVSAGILGQWPIGRLADRF-GRLLVLRVQVFVVILGSIAML-S----- 284 (381)
T ss_pred HHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHc-CcHHHHHHHHHHHHHHHHHHh-h-----
Confidence 33444455678888875 699999999988888899999999999999999 999999888777766654433 1
Q ss_pred CCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhhHHHHhhhhHHHhhhh
Q 045562 133 GSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWYFGMCMGTFVTLTVL 212 (525)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~ 212 (525)
.......+++.|++.+...|...+.+.|..|+++ ++...+.++...++|..+||.++
T Consensus 285 -----------------~~~~~~~~~l~g~~~~~~~p~~~~~~~~~~~~~~------~~~~~~~~~~~~~lG~~igp~~~ 341 (381)
T PRK03633 285 -----------------QAAMAPALFILGAAGFTLYPVAMAWACEKVEHHE------LVAMNQALLLSYTVGSLLGPSFT 341 (381)
T ss_pred -----------------hHHHHHHHHHHHHHHHhHHHHHHHHHHccCCHHH------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 1222345566777766778889999999998876 77778888888899999999999
Q ss_pred hhcccccchhhhHHHHHHHHHHHH
Q 045562 213 NYIQDNLNWILGFGIPCILMVIAL 236 (525)
Q Consensus 213 ~~l~~~~g~~~~f~~~~~~~~~~~ 236 (525)
|++.+++||++.|.+.+.+.++..
T Consensus 342 G~l~~~~g~~~~f~~~~~~~l~~~ 365 (381)
T PRK03633 342 AMLMQNYSDNLLFIMIASVSFIYL 365 (381)
T ss_pred HHHHHHhCccHHHHHHHHHHHHHH
Confidence 999999999999988776665443
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=4.8e-11 Score=128.17 Aligned_cols=148 Identities=18% Similarity=0.121 Sum_probs=114.8
Q ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhccCCCCc
Q 045562 58 GVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVLGLGLLTLSAVLLSGSTSE 137 (525)
Q Consensus 58 ~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 137 (525)
.+..++|.|+++++|++..+.+.+.+...++..++.+++|+++||+ |||+++..+.++..+..++......
T Consensus 293 ~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~~~~~~-------- 363 (496)
T PRK03893 293 PIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWL-GTRKAYVCSLLISQLLIIPVFAIGG-------- 363 (496)
T ss_pred hHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHhhccc--------
Confidence 4567899999889999999999999999999999999999999998 9999988877655554443332211
Q ss_pred cCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhhHHHHhhhhHHHhhhhhhccc
Q 045562 138 CQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWYFGMCMGTFVTLTVLNYIQD 217 (525)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l~~ 217 (525)
...+.+.+..++.++...+..+..++++.|.+|+++ |++++++++....+|..+||.++|++.+
T Consensus 364 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~g~~lgp~l~g~l~~ 427 (496)
T PRK03893 364 ----------ANVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQ------RAAGLGFTYNVGALGGALAPILGALIAQ 427 (496)
T ss_pred ----------cHHHHHHHHHHHHHHHhcccchhhHHHHHhhCCHHH------hhcccchhhhhhhHHHHHHHHHHHHHhc
Confidence 112333333444333333345667788899999988 9999999999999999999999999999
Q ss_pred ccchhhhHHHHHH
Q 045562 218 NLNWILGFGIPCI 230 (525)
Q Consensus 218 ~~g~~~~f~~~~~ 230 (525)
++||+..+.+.+.
T Consensus 428 ~~g~~~~~~~~~~ 440 (496)
T PRK03893 428 RLDLGTALASLSF 440 (496)
T ss_pred cCChHHHHHHHHH
Confidence 9999988765443
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.4e-11 Score=126.49 Aligned_cols=153 Identities=11% Similarity=0.024 Sum_probs=110.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHHHHHH-HH
Q 045562 46 IGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVLGLG-LL 124 (525)
Q Consensus 46 ~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~~~~~-l~ 124 (525)
....+.....++.+..++|.|+++.+|++..+.++....+.++..++.+++|+++||+ |||+.+..+..+..+... ..
T Consensus 244 ~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~-g~r~~~~~~~~~~~~~~~~~~ 322 (434)
T PRK15075 244 MLMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRI-GRRPVLIAFTVLAILTAYPAL 322 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHH
Confidence 3444456677788889999999988999999988888888888999999999999999 999988876544332221 11
Q ss_pred HHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhhHHHHh-h
Q 045562 125 TLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWYFGMC-M 203 (525)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~-~ 203 (525)
..... . .......+..++.+++.+...+....+..|.+|++. |++++++.+.... +
T Consensus 323 ~~~~~--~---------------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~------rg~~~g~~~~~~~~~ 379 (434)
T PRK15075 323 SWLVA--A---------------PSFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEV------RTAGFSLAYSLATAI 379 (434)
T ss_pred HHHHc--C---------------CchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCc------cchheeHHHHHHHHH
Confidence 11111 0 012233334445556666666667788899999998 9999998655444 4
Q ss_pred hhHHHhhhhhhcccccchh
Q 045562 204 GTFVTLTVLNYIQDNLNWI 222 (525)
Q Consensus 204 g~~~gp~~~~~l~~~~g~~ 222 (525)
++.++|.+.+++.+++|++
T Consensus 380 ~g~~~p~~~g~i~~~~g~~ 398 (434)
T PRK15075 380 FGGFTPAISTWLIHVTGDK 398 (434)
T ss_pred HhhhHHHHHHHHHHhcCCc
Confidence 5788999999999988864
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.28 E-value=2e-11 Score=130.01 Aligned_cols=172 Identities=13% Similarity=0.030 Sum_probs=135.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhcc-chHHHHHHH--HHH
Q 045562 40 RSALFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFL-GRYRAIIIA--SLI 116 (525)
Q Consensus 40 ~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~-Grr~~~~~~--~~~ 116 (525)
|+.+......++..+.++....+++.|+. ++|++..+.+.+.+...++..++.+++|+++||.. ++|+...++ .++
T Consensus 241 ~~~~~~~~~~~l~~~~~~~~~~~l~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~ 319 (455)
T TIGR00892 241 RGFLVYLSGNVIMFLGFFAPIIFLVPYAK-DKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLF 319 (455)
T ss_pred chHHHHHHHHHHHHHHccchHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHH
Confidence 45666666677777788888889999986 47999999999999999999999999999999841 344433333 233
Q ss_pred HHHHHHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhh
Q 045562 117 YVLGLGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNW 196 (525)
Q Consensus 117 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 196 (525)
..++.+++....+ .+.+++.+++.|++.+...+...+++.|.+|+++ +++++++
T Consensus 320 ~~l~~ll~~~~~~--------------------~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~------~g~~~g~ 373 (455)
T TIGR00892 320 NGLTHLLCALAGD--------------------YTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQR------FSSAVGL 373 (455)
T ss_pred HHHHHHHHHHhch--------------------HHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHH------HhhHHhH
Confidence 3333333333322 5667778889999999999999999999999888 9999999
Q ss_pred hHHHHhhhhHHHhhhhhhcccccc-hhhhHHHHHHHHHHHHHH
Q 045562 197 WYFGMCMGTFVTLTVLNYIQDNLN-WILGFGIPCILMVIALVV 238 (525)
Q Consensus 197 ~~~~~~~g~~~gp~~~~~l~~~~g-~~~~f~~~~~~~~~~~~~ 238 (525)
++...++|..+||.++|++.+.++ |+..|++.+++.+++.+.
T Consensus 374 ~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~~ 416 (455)
T TIGR00892 374 VTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGLF 416 (455)
T ss_pred HHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHHH
Confidence 999999999999999999998874 999999888766655443
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=6.4e-11 Score=125.22 Aligned_cols=169 Identities=15% Similarity=0.014 Sum_probs=111.2
Q ss_pred HHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHHHHHHHHHH-h
Q 045562 49 EMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVLGLGLLTL-S 127 (525)
Q Consensus 49 ~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~~~~~l~~~-~ 127 (525)
.+.....+|.+..|+|.|+.+.+|.+..+.+...........++.++.|+++||+ |||+.+.++.++.++....+.. .
T Consensus 252 ~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~-grr~~~~~~~~~~~~~~~~~~~~~ 330 (432)
T PRK10406 252 TAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKI-GRRTSMLCFGSLAALFTVPILSAL 330 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHHHHHHHHHHH
Confidence 3345778888999999999988999998988888887788888899999999998 9999887765544333222211 1
Q ss_pred hhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhhHHHHhh-hhH
Q 045562 128 AVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWYFGMCM-GTF 206 (525)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~-g~~ 206 (525)
.. . .+....+....+..++.+...+..+++.+|.+|++. |++++|+.+...++ ++.
T Consensus 331 ~~---~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~------r~t~~g~~~~~g~~~~g~ 387 (432)
T PRK10406 331 QN---V--------------SSPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQV------RALGVGLSYAVANALFGG 387 (432)
T ss_pred Hc---C--------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCc------cchhhhHHHHHHHHHHHh
Confidence 11 0 001211111122222233333456788899999999 99999997766553 345
Q ss_pred HHhhhhhhcccccc-hhhhHHHHHHHHHHHHHHHHhc
Q 045562 207 VTLTVLNYIQDNLN-WILGFGIPCILMVIALVVFLLG 242 (525)
Q Consensus 207 ~gp~~~~~l~~~~g-~~~~f~~~~~~~~~~~~~~~~~ 242 (525)
..|.+.+++.. .| |...+++.++..+++.+..+..
T Consensus 388 ~~p~~~~~l~~-~g~~~~~~~~~~~~~~i~~~~~~~l 423 (432)
T PRK10406 388 SAEYVALSLKS-IGMETAFFWYVTLMAVVAFLVSLML 423 (432)
T ss_pred HHHHHHHHHHH-hCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 58888886644 45 6556665555555555554443
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.2e-11 Score=125.33 Aligned_cols=158 Identities=16% Similarity=0.088 Sum_probs=123.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHHHHHHHH
Q 045562 45 IIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVLGLGLL 124 (525)
Q Consensus 45 ~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~~~~~l~ 124 (525)
+....++.+...+....++|.|+.+++|.+..+.+.+.....++..++.++.|+++||+ |||+.+..+.++..+.....
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-g~~~~~~~~~~~~~~~~~~~ 321 (405)
T TIGR00891 243 LVVLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWL-GRRKAYVCSLLAGQLLIIPV 321 (405)
T ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchhhhHHHHHHHHHHHHHH
Confidence 33444455566667778899999989999999999999999999999999999999998 99999888776543322222
Q ss_pred HHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhhHHHHhhh
Q 045562 125 TLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWYFGMCMG 204 (525)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g 204 (525)
.... .+.+.+.+..++.++..++..+..++++.|.+|+++ |++++++.+...++|
T Consensus 322 ~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~g~~~~~~~~g 376 (405)
T TIGR00891 322 FAIG-------------------ANVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQ------RAAGLGFTYQLGNLG 376 (405)
T ss_pred HHhC-------------------CchHHHHHHHHHHHHHHccchhhHHHHHhhhCCcch------hHHHhhHHHHHHHHH
Confidence 2111 113445555566676666777788899999999988 999999999999999
Q ss_pred hHHHhhhhhhcccccc-hhhhHHHH
Q 045562 205 TFVTLTVLNYIQDNLN-WILGFGIP 228 (525)
Q Consensus 205 ~~~gp~~~~~l~~~~g-~~~~f~~~ 228 (525)
..++|.+.|++.++.| |+..+...
T Consensus 377 ~~~g~~~~g~l~~~~g~~~~~~~~~ 401 (405)
T TIGR00891 377 GALAPIIGALLAQRLDEYGTALASL 401 (405)
T ss_pred HHHHHHHHHHHHHhccccchhHHhh
Confidence 9999999999999998 87766543
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.1e-10 Score=122.14 Aligned_cols=177 Identities=12% Similarity=0.064 Sum_probs=130.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHH-HHHHHHH
Q 045562 40 RSALFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAII-IASLIYV 118 (525)
Q Consensus 40 ~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~-~~~~~~~ 118 (525)
|..+...+..++.....++...++|.|++ ++|++..+.+.+.....++..++.++.|+++||+ |||+.+. .+.+...
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~~~~~~~l~~~ 299 (402)
T TIGR00897 222 PNVLLGGMVRIINTIGLFGFAVFLPMFVA-ELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKL-GWMNTVRWFGGVGCG 299 (402)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhh-cchhHHHHHHHHHHH
Confidence 35666667777788888899999999985 5899999999988889999999999999999998 9888764 3333333
Q ss_pred HHHHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhhH
Q 045562 119 LGLGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWY 198 (525)
Q Consensus 119 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 198 (525)
++...+..... ... .+.+..++..++.|++.+...+ ..+...|..| ++ |++++++.+
T Consensus 300 ~~~~~l~~~~~-~~~--------------~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~~-~~------~g~~~g~~~ 356 (402)
T TIGR00897 300 IFTLALYYIPQ-HFG--------------HSFAVALIIAIALGIFLAGYVP-LAAVFPTLAP-KH------KGAAMSVLN 356 (402)
T ss_pred HHHHHHHHHHH-ccC--------------CcHHHHHHHHHHHHHHHHHHHH-HHHHHHhhCc-ch------hHHHHHHHH
Confidence 33333322211 000 1145555667777877776544 3455666544 46 899999999
Q ss_pred HHHhhhhHHHhhhhhhcccccchhhhHHHHHHHHHHHHHHHHh
Q 045562 199 FGMCMGTFVTLTVLNYIQDNLNWILGFGIPCILMVIALVVFLL 241 (525)
Q Consensus 199 ~~~~~g~~~gp~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~ 241 (525)
....+|..++|.+++++.+.+||...|++.+++.+++.+...+
T Consensus 357 ~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~~~ 399 (402)
T TIGR00897 357 LSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFLTAF 399 (402)
T ss_pred HHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999888776665554443
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.26 E-value=5.8e-10 Score=120.94 Aligned_cols=201 Identities=17% Similarity=0.230 Sum_probs=153.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHHHHH
Q 045562 42 ALFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVLGL 121 (525)
Q Consensus 42 ~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~~~~ 121 (525)
..+++....+......++......-+.+.++++..+.|++.+.+-++..+...+..+.+-|. -|-+.+-+|.++++++.
T Consensus 98 fl~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~-HrPr~Ig~G~~~m~lgs 176 (735)
T KOG3626|consen 98 FLVLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRG-HRPRWIGIGLVLMGLGS 176 (735)
T ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhcccc-CccceeeechhHHHHHH
Confidence 34344333343444447777777788999999999999999999999999999999999996 77788889999999999
Q ss_pred HHHHHhhhh-----------------c-------------cCCCCccCCCCc--CCCchhHHHHHHHHHHHHhccccCcc
Q 045562 122 GLLTLSAVL-----------------L-------------SGSTSECQNTSC--SANQFQVIFFFFSLYLIALGQGGHKP 169 (525)
Q Consensus 122 ~l~~~~~~~-----------------~-------------~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~g~g~g~~~~ 169 (525)
+++++.+.. + ....+..++..| .+++.-+..++++.++.|+|....++
T Consensus 177 ll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~t 256 (735)
T KOG3626|consen 177 LLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFT 256 (735)
T ss_pred HHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCcc
Confidence 999877321 0 011111222233 22333445788999999999999999
Q ss_pred chhhhhhccccCCCcccccccceehhhhHHHHhhhhHHHhhhhhhccc------------------ccc-hhhhHHHHHH
Q 045562 170 CVQAFGADQFDSQHPLESKLKSSFFNWWYFGMCMGTFVTLTVLNYIQD------------------NLN-WILGFGIPCI 230 (525)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l~~------------------~~g-~~~~f~~~~~ 230 (525)
...+++=|.+.+++ -+..+|+++.+..+|.++|-++++++.+ +.| |+..|++.+.
T Consensus 257 lGisYiDDnvk~~~------SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~ 330 (735)
T KOG3626|consen 257 LGISYIDDNVKKKN------SPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGA 330 (735)
T ss_pred CCCccccccccccC------CcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHH
Confidence 99999999998888 8999999999999999999999887632 234 8889999998
Q ss_pred HHHHHHHHHHhcccceeec
Q 045562 231 LMVIALVVFLLGTKIYRYS 249 (525)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~ 249 (525)
+.++..+.++.++++.++.
T Consensus 331 ~~~~~a~p~f~fPk~lp~~ 349 (735)
T KOG3626|consen 331 LLLFSAVPLFFFPKELPKS 349 (735)
T ss_pred HHHHHHHHHHhCcccCccc
Confidence 8888777777777765543
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.2e-10 Score=123.25 Aligned_cols=179 Identities=11% Similarity=0.069 Sum_probs=121.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHHH
Q 045562 40 RSALFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVL 119 (525)
Q Consensus 40 ~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~~ 119 (525)
+..+......++.....|++..++|.|+++..|++..+.++....+.+...++.+++|+++||+ ++++....+.....+
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~-~~~~~~~~~~~~~~~ 329 (438)
T TIGR00712 251 KLLWYIAIANVFVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV-FKGNRGATGVFFMTL 329 (438)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCcccHHHHHHHHH
Confidence 3456666666666777788889999999988999999999998899999999999999999998 654322223322211
Q ss_pred ---HHHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhh
Q 045562 120 ---GLGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNW 196 (525)
Q Consensus 120 ---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 196 (525)
+...+..... .+.+......++.|++..+..........|.+|+++ |+++.++
T Consensus 330 ~~~~~~~~~~~~~------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~ 385 (438)
T TIGR00712 330 VTIAVIVYWMNPA------------------GNPLVDMICMIVIGFLIYGPVMLIGLHALELAPKKA------AGTAAGF 385 (438)
T ss_pred HHHHHHHHHhcCC------------------CchHHHHHHHHHHHHHHccHHHHHHHHHHHhcChhh------eeeehhh
Confidence 1111111100 012222333344454433322222346779999888 9999999
Q ss_pred hHHHHhhh-hHHHhhhhhhcccccchhhhHHHHHHHHHHHHHHHHhcc
Q 045562 197 WYFGMCMG-TFVTLTVLNYIQDNLNWILGFGIPCILMVIALVVFLLGT 243 (525)
Q Consensus 197 ~~~~~~~g-~~~gp~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~ 243 (525)
.+...++| ..+||.+.|++.++.||..+|++..+..+++.+..+...
T Consensus 386 ~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 433 (438)
T TIGR00712 386 TGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVM 433 (438)
T ss_pred hchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHH
Confidence 98887776 468999999999999999999877766666555544433
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.8e-10 Score=123.83 Aligned_cols=180 Identities=12% Similarity=0.079 Sum_probs=131.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHH-HHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHHHH
Q 045562 42 ALFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVN-AWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVLG 120 (525)
Q Consensus 42 ~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~-~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~~~ 120 (525)
.+.+....+......+....+.+.|+.+.+|++..+.+.... ...++..++.+++|+++||+ |||+.+.++.++.+++
T Consensus 224 ~~~~ll~~~l~~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~-g~~~~l~i~~~l~~l~ 302 (491)
T PRK11010 224 AWLILLLIVLYKLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRL-SLFRALMIFGILQGVS 302 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHH
Confidence 343444345555666666678888988889999999999875 44578889999999999999 9998887766655554
Q ss_pred HHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhhHHH
Q 045562 121 LGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWYFG 200 (525)
Q Consensus 121 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 200 (525)
...+....... .+...+....++..++.|...+...++..+..+++. +++.++..+..
T Consensus 303 ~l~~~~l~~~~----------------~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~------~~t~~gl~~s~ 360 (491)
T PRK11010 303 NAGYWLLSITD----------------KNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSF------SATQFALLSAL 360 (491)
T ss_pred HHHHHHHHhcc----------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC------cHHHHHHHHHH
Confidence 43332211100 013334444555454555555667888899999888 88899999999
Q ss_pred HhhhhHHHhhhhhhcccccchhhhHHHHHHHHHHHHHHHHhccc
Q 045562 201 MCMGTFVTLTVLNYIQDNLNWILGFGIPCILMVIALVVFLLGTK 244 (525)
Q Consensus 201 ~~~g~~~gp~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~ 244 (525)
.++|..+++.+.|++.+.+||+..|.+.+++.+++++.....++
T Consensus 361 ~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~~~ 404 (491)
T PRK11010 361 SAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVCRQ 404 (491)
T ss_pred HHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999988888887776666544
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.7e-10 Score=116.50 Aligned_cols=162 Identities=15% Similarity=0.068 Sum_probs=125.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhccc--cCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHH
Q 045562 40 RSALFIIGVEMAERFAYYGVSSNLITYLTGP--LAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIY 117 (525)
Q Consensus 40 ~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~--lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~ 117 (525)
|..++..+..|+....--++..|++.|+.+. +|++..+.+...+.+..+..++++++++++||+ |+||++.++..+.
T Consensus 140 ~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~-g~~~~l~~~~~l~ 218 (310)
T TIGR01272 140 THLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMI-SQGRYLAFNAFLA 218 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHH
Confidence 3455555555555556667788999999854 799999999999999999999999999999999 9999988887777
Q ss_pred HHHHHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhh
Q 045562 118 VLGLGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWW 197 (525)
Q Consensus 118 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 197 (525)
+++..+...... .. ...+.++.|++.+..+|+..+...+.+|++. +++.++.
T Consensus 219 ~~~~~l~~~~~~--------------------~~-~~~~~~l~g~~~s~i~P~~~s~a~~~~~~~~-------~~asai~ 270 (310)
T TIGR01272 219 VLLSIGAALTHG--------------------YV-AMWFVLALGLFNSIMFPTIFSLALNALGRHT-------SQGSGIL 270 (310)
T ss_pred HHHHHHHHHcCC--------------------HH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh-------hhhHHHH
Confidence 766654443321 11 2234557899999999999999999988653 3444554
Q ss_pred HHHHhhhhHHHhhhhhhcccccchhhhHHHHHHH
Q 045562 198 YFGMCMGTFVTLTVLNYIQDNLNWILGFGIPCIL 231 (525)
Q Consensus 198 ~~~~~~g~~~gp~~~~~l~~~~g~~~~f~~~~~~ 231 (525)
.+..+|+.+.|.+.|.+.|..|.+.+|++..++
T Consensus 271 -~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~~~~ 303 (310)
T TIGR01272 271 -CLAIVGGAIVPLLQGSLADCLGIQLAFALPVPC 303 (310)
T ss_pred -HHHHhcchHHHHHHHHHHHhccchHHHHHHHHH
Confidence 567799999999999999999999888765544
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.1e-10 Score=118.05 Aligned_cols=185 Identities=16% Similarity=0.101 Sum_probs=145.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHH
Q 045562 39 WRSALFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYV 118 (525)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~ 118 (525)
.+++|.+.+.+++..-++-++..++|.|+++++|.++.+++.....+.+...+.++.+|+|+||+ |.+|++......++
T Consensus 217 ~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~-Gg~rv~~~~f~~~~ 295 (417)
T COG2223 217 NKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRI-GGRRVTLAVFVGMA 295 (417)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhc-cchhHHHHHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999 77777777777777
Q ss_pred HHHHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhhH
Q 045562 119 LGLGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWY 198 (525)
Q Consensus 119 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 198 (525)
++..+.....+.... ..+...++...+.+++..|.-...+..++...+|++ -+.+.++..
T Consensus 296 ~~~~~l~~~~~~~~~-------------~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~~-------~G~v~G~vg 355 (417)
T COG2223 296 LAAALLSLFLTGFGH-------------GGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFPKE-------TGAVTGIVG 355 (417)
T ss_pred HHHHHHHcccccccc-------------CcchHHHHHHHHHHHHHhccCcchheeechHHHHhh-------hhHHHHHHH
Confidence 776666655321100 011344444444455555555567788888888874 589999999
Q ss_pred HHHhhhhHHHhhhhhhcccccc-hhhhHHHHHHHHHHHHHHHHhccc
Q 045562 199 FGMCMGTFVTLTVLNYIQDNLN-WILGFGIPCILMVIALVVFLLGTK 244 (525)
Q Consensus 199 ~~~~~g~~~gp~~~~~l~~~~g-~~~~f~~~~~~~~~~~~~~~~~~~ 244 (525)
.+.++|+..-|...+...+..| +...|++.....+++.+..+....
T Consensus 356 a~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~~~y~ 402 (417)
T COG2223 356 AIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTWALYA 402 (417)
T ss_pred HhccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999888888 899998888777777776555444
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.3e-12 Score=140.82 Aligned_cols=194 Identities=17% Similarity=0.215 Sum_probs=3.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHh
Q 045562 48 VEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVLGLGLLTLS 127 (525)
Q Consensus 48 ~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~~~~~l~~~~ 127 (525)
..+.. ....++......-+++.++++++++|++.+.+-++..+..++..++.+|. .|-|.+-+|.+++++|.+++++.
T Consensus 11 ~~~~q-~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~-hrprwig~g~~~~~~g~~l~~lP 88 (539)
T PF03137_consen 11 LGLFQ-MMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRG-HRPRWIGIGALLMGLGSLLFALP 88 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHH-HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCcceeeecHHHHHHHHHHHhcc
Confidence 33344 66666666666788999999999999999999999999999999999986 77778888899999999999887
Q ss_pred hhhccCC----------CCccCCCCc-----------------CCC---chhHHHHHHHHHHHHhccccCccchhhhhhc
Q 045562 128 AVLLSGS----------TSECQNTSC-----------------SAN---QFQVIFFFFSLYLIALGQGGHKPCVQAFGAD 177 (525)
Q Consensus 128 ~~~~~~~----------~~~~~~~~~-----------------~~~---~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~ 177 (525)
+.....- ....+...| .++ ...+..++++.++.|+|....++...+|+=|
T Consensus 89 hf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDD 168 (539)
T PF03137_consen 89 HFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDD 168 (539)
T ss_dssp ---------------------------------------------------------------SSS--------------
T ss_pred HhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeecc
Confidence 5422110 000111223 111 1234678899999999999999999999999
Q ss_pred cccCCCcccccccceehhhhHHHHhhhhHHHhhhhhhccc---------------------ccc-hhhhHHHHHHHHHHH
Q 045562 178 QFDSQHPLESKLKSSFFNWWYFGMCMGTFVTLTVLNYIQD---------------------NLN-WILGFGIPCILMVIA 235 (525)
Q Consensus 178 ~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l~~---------------------~~g-~~~~f~~~~~~~~~~ 235 (525)
.+++++ -+..+|+++.+..+|.++|-++++.+.+ +.| |+..|++.+++.++.
T Consensus 169 nv~~~~------splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~ 242 (539)
T PF03137_consen 169 NVSKKN------SPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLS 242 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccc------CccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHH
Confidence 999988 7899999999999999999888886532 124 888888888777776
Q ss_pred HHHHHhcccceeec
Q 045562 236 LVVFLLGTKIYRYS 249 (525)
Q Consensus 236 ~~~~~~~~~~~~~~ 249 (525)
.+.++.++|+.++.
T Consensus 243 aipl~~FPk~lp~~ 256 (539)
T PF03137_consen 243 AIPLFFFPKKLPGT 256 (539)
T ss_dssp --------------
T ss_pred HHHHHcCCccCCCc
Confidence 66666666665544
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.4e-10 Score=121.56 Aligned_cols=186 Identities=17% Similarity=0.152 Sum_probs=152.9
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchH--HHHHHHHH
Q 045562 38 GWRSALFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRY--RAIIIASL 115 (525)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr--~~~~~~~~ 115 (525)
+.|++...+...++.+-+...+......|.++.+|++..+...+.....+...++.+++|++.||+ |.| +++..++.
T Consensus 279 ~~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~-g~k~~~~l~~~l~ 357 (477)
T PF11700_consen 279 KLRQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRF-GPKTKRTLLISLI 357 (477)
T ss_pred hChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHH
Confidence 346777778888888888888999999999999999999999998899999999999999999999 988 88888776
Q ss_pred HHHHHHHHHHH--hhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCccccccccee
Q 045562 116 IYVLGLGLLTL--SAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSF 193 (525)
Q Consensus 116 ~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 193 (525)
+..+..+.-.+ ....... .+.+.+++.-++.|+..|..++...++.+|+.|+++ .+..
T Consensus 358 ~~~~i~~~g~~G~~~~~~g~--------------~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~------e~ef 417 (477)
T PF11700_consen 358 LWIIIPLYGLFGFWPSFFGL--------------KSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGR------EAEF 417 (477)
T ss_pred HHHHHHHHHHHHhhhcccCc--------------ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCch------hhHH
Confidence 65433322222 1110011 225677888889999999999999999999999998 8999
Q ss_pred hhhhHHHHhhhhHHHhhhhhhcccccc-hhhhHHHHHHHHHHHHHHHHhccc
Q 045562 194 FNWWYFGMCMGTFVTLTVLNYIQDNLN-WILGFGIPCILMVIALVVFLLGTK 244 (525)
Q Consensus 194 ~~~~~~~~~~g~~~gp~~~~~l~~~~g-~~~~f~~~~~~~~~~~~~~~~~~~ 244 (525)
+|++.......+.+||++.|.+.+.+| .|..+....++.++++++++....
T Consensus 418 Fgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~~v~~ 469 (477)
T PF11700_consen 418 FGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILLFFVDV 469 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhccc
Confidence 999999999999999999999998887 888888888777777777755443
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.2e-09 Score=113.26 Aligned_cols=362 Identities=15% Similarity=0.105 Sum_probs=212.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHH-HHHHHHH----HHHHHhhhhhHHHHhhhccchHHHHHHHHHHH
Q 045562 43 LFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATA-AENVNAW----SGVASLLPLFGAFLADSFLGRYRAIIIASLIY 117 (525)
Q Consensus 43 ~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~-~~~~~~~----~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~ 117 (525)
....+...+.-...+........+.....+.+.... +...... .+...+..+..|.++||+ |||..+.+.+...
T Consensus 24 ~~~~fl~~fa~~l~~~~~~~~~~~~~ct~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~iG~lSD~~-grk~~L~~~~~~~ 102 (463)
T KOG2816|consen 24 EPLLFLYMFSWGLSSTVMTNVILYLACTFGDDYQLENGLLLGVKQVTAGLLTLISSPLIGALSDRY-GRKVVLLLPLFGT 102 (463)
T ss_pred HHHHHHHHHHHHhcCcchhhhhhhhhcccccCccchhhhhhhHHHHhhHHHHHHHHhhhHHhhhhh-hhhhhHHHHHHHH
Confidence 333333333333333333555566665655544322 2333333 566778889999999999 9999999998887
Q ss_pred HHHHHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHH--hccccCccchhhhhhccccCCCcccccccceehh
Q 045562 118 VLGLGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIA--LGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFN 195 (525)
Q Consensus 118 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g--~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 195 (525)
.+..+...+.. +|.++ +.+ -+.+.......++++|....++ |...++
T Consensus 103 ~l~~~~~~~~~---------------------~~~~~----~~~l~g~~~~~~s~~~a~vadis~~~~------R~~~~g 151 (463)
T KOG2816|consen 103 ILPALCLLFQG---------------------YWFFL----LLGLSGGFSAIFSVGFAYVADISSEEE------RSSSIG 151 (463)
T ss_pred HHhHHHHHHHH---------------------HHHhh----hcccccchhhhhhhhhhheeeccchhH------HHHHHH
Confidence 77776666553 12222 322 2334456677888999999888 999999
Q ss_pred hhHHHHhhhhHHHhhhhhhcccccchhhhHHHHHHHHHHHHHHHHhcccceeecCCCCCCchhhhHHHHHHHHHhccccC
Q 045562 196 WWYFGMCMGTFVTLTVLNYIQDNLNWILGFGIPCILMVIALVVFLLGTKIYRYSLKGEEKSPFLRIGQVFVTAVRNWRIT 275 (525)
Q Consensus 196 ~~~~~~~~g~~~gp~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (525)
+.+.....+..++|.+++.+.+..|...+|.+..+..++..+..+...|+...++... . .+.. +.+..+
T Consensus 152 ll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~--~--~~~~-------~~~~~~ 220 (463)
T KOG2816|consen 152 LLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKERS--D--ATLR-------ELTPGS 220 (463)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCccccc--c--cccc-------ccCCCc
Confidence 9999999999999999999999999999999999888888777766666543322221 0 0000 000000
Q ss_pred CchhhhHhhhhCCCCCCCccchhhhhHHHhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhh
Q 045562 276 PSAIALEEEARGTLPHQSSEQFKFLNKALLASNGSKGYGKVCSVGEVEEAKALLRLVPIWTTCLVYAIVFAQSSTFFTKQ 355 (525)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (525)
. ...+. ..+++...+ ...+|..+.++ +...........+.....
T Consensus 221 ~---------------~~~~~--------------~~~~~~~~~--~~~~r~~l~l~--l~~~~~~~~~~~~~~~~~--- 264 (463)
T KOG2816|consen 221 L---------------DSSHV--------------ADAFQSLTK--VGPDRLLLLLL--LVAFLSSLPEAGGASDVL--- 264 (463)
T ss_pred c---------------cchhh--------------hhhhhhhcc--cCCCccchHHH--HHHHHHHHHHhcCceeEE---
Confidence 0 00000 000000100 01111111111 111111111111111011
Q ss_pred hhccccCcccccccChhhhhhhhhHHHHHHHHhhhhhhhhh-hhhhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 045562 356 GVTMDRSVVADFQIPAASLQSFISLAIVLTIPIYDRIFVPI-ARTFTRKPAGITMLQRIGTGMFLSAASMTGATLVEMKR 434 (525)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~l-~~r~~~~~~~~~~~~~i~ig~~l~~i~~~~~~~~~~~~ 434 (525)
...++..++. .....+.+.........+.+.+ ..|+ .+.++.+ +.+..|+..-.+...++++.+
T Consensus 265 ~~yl~~~f~w-~~~~~s~~~~~~~~~~~i~~l~----~~~~l~~~l~~~-------~~i~lGl~~~~~~~~~~af~~--- 329 (463)
T KOG2816|consen 265 LLYLKAKFGW-NKKEFSDLLSLVSILGIISQLL----LLPLLSSILGEK-------RLISLGLLSEFLQLLLFAFAT--- 329 (463)
T ss_pred EEEEeeecCc-CHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhhh-------hHhhHHHHHHHHHHHHHHHhc---
Confidence 1122222222 1122222334444444333333 2323 3333322 478889999999999998853
Q ss_pred HhhhhhcCCcCCCCCCccchHHHHHHHHHHHHHHHHHHhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045562 435 LKTAEEYGLVDKPNVTIPMSVWWLIPQYALLGVSEAFTMVGLQEFFYDQVPTELRSVGLSLYLSIFGVGSFLSSFLISAI 514 (525)
Q Consensus 435 ~~~~~~~g~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~~~~~~i 514 (525)
+.|.+... ...........|...++++.+++++.+|+..++......+.+.+++.+-+.+
T Consensus 330 -------------------~~w~~~~~-~v~~~~~~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i 389 (463)
T KOG2816|consen 330 -------------------ETWMMFAA-GVVVALAGIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNI 389 (463)
T ss_pred -------------------cchhhhHH-HHHHHhhcchhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHH
Confidence 33433333 4444455677899999999999999999999999999999999999999988
Q ss_pred hhhc
Q 045562 515 ENAT 518 (525)
Q Consensus 515 ~~~~ 518 (525)
...+
T Consensus 390 ~~~t 393 (463)
T KOG2816|consen 390 FALT 393 (463)
T ss_pred HHHH
Confidence 6655
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.21 E-value=6.1e-11 Score=121.72 Aligned_cols=162 Identities=14% Similarity=0.153 Sum_probs=119.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHH--HH
Q 045562 40 RSALFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASL--IY 117 (525)
Q Consensus 40 ~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~--~~ 117 (525)
|..+.+.+..++.....+.+..++|.|+.+.+|.+..+.+.......++..++.++.|+++||+.+||+....... ..
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~ 295 (379)
T TIGR00881 216 KVLWYISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALI 295 (379)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 4566666777777777788888999999999999999999999999999999999999999986244433322211 11
Q ss_pred HHHHHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhh
Q 045562 118 VLGLGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWW 197 (525)
Q Consensus 118 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 197 (525)
.++......... .+....++..++.|+...+..+....+..|.+|+++ |+++.++.
T Consensus 296 ~~~~~~~~~~~~------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~ 351 (379)
T TIGR00881 296 IVSLLVYWLNPA------------------ANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKA------AGTAAGFV 351 (379)
T ss_pred HHHHHHHhcCcc------------------hhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcch------hHHHHHHH
Confidence 122211111100 113444455566666555555666778899999988 99999999
Q ss_pred HHHHhhhhHHHhhhhhhcccccchhhhH
Q 045562 198 YFGMCMGTFVTLTVLNYIQDNLNWILGF 225 (525)
Q Consensus 198 ~~~~~~g~~~gp~~~~~l~~~~g~~~~f 225 (525)
+...++|..++|.+.|++.+++||+..|
T Consensus 352 ~~~~~~g~~~~~~~~g~l~~~~g~~~~f 379 (379)
T TIGR00881 352 GFFAYLGGILAGLPLGYLADGFGWAGAF 379 (379)
T ss_pred HHhhhhhhhhhhhhHHHHHHhhcccccC
Confidence 9999999999999999999999998764
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.8e-10 Score=122.04 Aligned_cols=169 Identities=15% Similarity=0.078 Sum_probs=119.0
Q ss_pred HHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhccCCCCcc
Q 045562 59 VSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVLGLGLLTLSAVLLSGSTSEC 138 (525)
Q Consensus 59 ~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 138 (525)
+..+.|.+ .+++|++..+.+.......++..++.+++|+++||+ |||+.+..+..+..++..++.+.........
T Consensus 303 ~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 377 (481)
T TIGR00879 303 IMYYSPTI-FENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRF-GRRPLLLIGAAGMAICLFVLGILGASFVTGS--- 377 (481)
T ss_pred hHHHHHHH-HHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHHHHhhcccCCc---
Confidence 34445544 457899998888888888899999999999999998 9999999988877777766663221000000
Q ss_pred CCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhhHHHHhhhhHHHhhhhhhcccc
Q 045562 139 QNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWYFGMCMGTFVTLTVLNYIQDN 218 (525)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l~~~ 218 (525)
........+....+..+....+..+....+..|.+|+++ |+++++..+...++|..++|.+.+++.++
T Consensus 378 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~------~~~~~~~~~~~~~lg~~i~~~~~~~~~~~ 445 (481)
T TIGR00879 378 ------SKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSL------RPKGISIAVAANWLANFIVGFLFPTMLES 445 (481)
T ss_pred ------ccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 000012222222222222222334667788899999988 99999999999999999999999999998
Q ss_pred cchhhhHHHHHHHHHHHHHHHHhccc
Q 045562 219 LNWILGFGIPCILMVIALVVFLLGTK 244 (525)
Q Consensus 219 ~g~~~~f~~~~~~~~~~~~~~~~~~~ 244 (525)
.+|+..|++.+++.+++.+......+
T Consensus 446 ~~~~~~f~~~~~~~~~~~i~~~~~~~ 471 (481)
T TIGR00879 446 IGVGGVFIFFGGLNVLGLIFVYFFLP 471 (481)
T ss_pred cCccceehhHHHHHHHHHHHHheecc
Confidence 99999998877776665555544443
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=4.2e-10 Score=116.93 Aligned_cols=169 Identities=9% Similarity=0.013 Sum_probs=130.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHHH
Q 045562 40 RSALFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVL 119 (525)
Q Consensus 40 ~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~~ 119 (525)
|..+......++..........+++.|+. +.|.+..+.+.+.+...+...+..++.|++.||+ |+|+.+..+.....+
T Consensus 205 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~l~~~~~~~~~ 282 (382)
T PRK11128 205 PTVWRFLLCVSLLQGSHAAYYGFSAIYWQ-AAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRW-SARDLLLLSAICGVV 282 (382)
T ss_pred hhHHHHHHHHHHHHHHhHhHHHHHHHHHH-HCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHH
Confidence 45565555566666666667778889996 5899999999998888888889999999999998 999999998888888
Q ss_pred HHHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhhH-
Q 045562 120 GLGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWY- 198 (525)
Q Consensus 120 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~- 198 (525)
+..++...++ .+.+++..++.|++.+...+....++.+. ++++ ++++.+.++
T Consensus 283 ~~~~~~~~~~--------------------~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~------~~~~~~~~~~ 335 (382)
T PRK11128 283 RWGLMGSTTA--------------------LPWLIVIQILHCGTFTVCHLAAMRYIAAR-PGSE------VIRLQALYSA 335 (382)
T ss_pred HHHHHHhhhh--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhh------hHHHHHHHHH
Confidence 7766665543 56677888889999888888888887776 5545 677888765
Q ss_pred HHHhhhhHHHhhhhhhcccccchhhhHHHHHHHHHHHHHH
Q 045562 199 FGMCMGTFVTLTVLNYIQDNLNWILGFGIPCILMVIALVV 238 (525)
Q Consensus 199 ~~~~~g~~~gp~~~~~l~~~~g~~~~f~~~~~~~~~~~~~ 238 (525)
....+|..+||.++|++.|.+|+ ..|+..+++.++++.+
T Consensus 336 ~~~~~g~~ig~~i~G~l~~~~g~-~~~~~~~~~~~~~~~~ 374 (382)
T PRK11128 336 LAMGGSIAIMTVLSGFLYQHLGA-GVFWVMALVALPALFI 374 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHH
Confidence 55678889999999999999987 4666666555544443
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.3e-09 Score=108.15 Aligned_cols=348 Identities=11% Similarity=0.005 Sum_probs=196.1
Q ss_pred HHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhccCCCCccCCC
Q 045562 62 NLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVLGLGLLTLSAVLLSGSTSECQNT 141 (525)
Q Consensus 62 ~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 141 (525)
.+..|..+.+| +...+-|...+|.+.+....+++-|+.|++ |-|....++..+..+|..+=..+.. +..
T Consensus 66 ~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~-GLR~a~llgt~ln~iGa~Ir~iss~-p~v-------- 134 (480)
T KOG2563|consen 66 PINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKF-GLRTALLLGTVLNGIGAWIRLISSL-PFV-------- 134 (480)
T ss_pred hHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhccc-chHHHHHHHHHHHHHHHHHhhhccC-ccc--------
Confidence 45566777777 666777889999999999999999999999 9999999999999999877666543 211
Q ss_pred CcCCCchhHH--HHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhhHHHHhhhhHHHhhhhhhccc--
Q 045562 142 SCSANQFQVI--FFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWYFGMCMGTFVTLTVLNYIQD-- 217 (525)
Q Consensus 142 ~~~~~~~~~~--~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l~~-- 217 (525)
+..++ ....+..+.+..+-.+....+-+.+-+||+++ |..+...-.++..+|..+|.++...+..
T Consensus 135 -----~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~q------ra~A~~~~v~~n~LGvavg~llppilV~~~ 203 (480)
T KOG2563|consen 135 -----PPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQ------RAIATVLGVMGNPLGVAVGFLLPPILVPSS 203 (480)
T ss_pred -----cccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcch------hhhhhhHHHhcchHHHHHHhhccceecCCC
Confidence 11233 66777778877777777776777888999999 8888887666666666666655555543
Q ss_pred ----ccchhhh--HHHHHHHHHHHHHHHHhcccceeecCCCCCCchhhhHHHHHHHHHhccccCCchhhhHhhhhCCCCC
Q 045562 218 ----NLNWILG--FGIPCILMVIALVVFLLGTKIYRYSLKGEEKSPFLRIGQVFVTAVRNWRITPSAIALEEEARGTLPH 291 (525)
Q Consensus 218 ----~~g~~~~--f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (525)
...|... |+...++..+.+......+++.++.+|.. +. +..
T Consensus 204 ~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tPps~--s~--~~~----------------------------- 250 (480)
T KOG2563|consen 204 KDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPTPPSA--SQ--AAL----------------------------- 250 (480)
T ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCch--hH--hhh-----------------------------
Confidence 2346553 44333333333333444444333333221 00 000
Q ss_pred CCccchhhhhHHHhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhccccCcccccccCh
Q 045562 292 QSSEQFKFLNKALLASNGSKGYGKVCSVGEVEEAKALLRLVPIWTTCLVYAIVFAQSSTFFTKQGVTMDRSVVADFQIPA 371 (525)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (525)
.+.++.... ++..+++.-++.........-.++..+..+..-+..... + +...
T Consensus 251 ---~~~~f~~si---------------~~~~~n~~F~il~~~ygi~~g~F~~l~~~l~~~l~~sgY--~-------~~~a 303 (480)
T KOG2563|consen 251 ---QDASFPKSI---------------KSCFKNRQFIILAICYGIGLGLFNSLSTLLNLALCPSGY--E-------GVFA 303 (480)
T ss_pred ---hcCcHHHHH---------------HHHHcCccHHHHHHHHhhhHHHHHHHHHHhhhccccccC--C-------cccc
Confidence 000111110 001222222222222222222223222222111111000 0 1122
Q ss_pred hhhhhhhhHHHHHHHHhhhhhhhhhhhhhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCcCCCCCCc
Q 045562 372 ASLQSFISLAIVLTIPIYDRIFVPIARTFTRKPAGITMLQRIGTGMFLSAASMTGATLVEMKRLKTAEEYGLVDKPNVTI 451 (525)
Q Consensus 372 ~~~~~~~~~~~i~~~~l~~~~~~~l~~r~~~~~~~~~~~~~i~ig~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 451 (525)
+++.....+..++.+.+ ...+.||..+ .+..+.+-+....++...+..... +
T Consensus 304 G~ig~l~iv~Gmlga~~----~gii~Dktk~------fk~~~~v~~~~~~v~~~~l~~~t~---------~--------- 355 (480)
T KOG2563|consen 304 GYIGALMIVAGMLGALA----SGIIADKTKK------FKLTTLVLYLFALVGTLMLLTCTL---------F--------- 355 (480)
T ss_pred chhHHHHHHHHHHHHHH----HHhhhhhhhh------HHHHHHHHHHHHHHHHHHHHHhhc---------c---------
Confidence 33333333444444444 4446777322 122233333333333222221110 0
Q ss_pred cchHHHHHHHHHHHHHHHHHHhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 045562 452 PMSVWWLIPQYALLGVSEAFTMVGLQEFFYDQVPTELRSVGLSLYLSIFGVGSFLSSFLISAIENATG 519 (525)
Q Consensus 452 ~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~~~~~~i~~~~~ 519 (525)
+-..+++.....+.|.++....|+..++..|..-+...++.+|+.++..++-+++-.+.-+...+..+
T Consensus 356 ~~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~~~~ 423 (480)
T KOG2563|consen 356 LGDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGILAEDLG 423 (480)
T ss_pred CCceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHHHHhhccC
Confidence 23445566666778888889999999999999999999999999987766666666666665555444
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.16 E-value=4.8e-10 Score=117.02 Aligned_cols=171 Identities=11% Similarity=0.112 Sum_probs=125.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcccc---CCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHH
Q 045562 41 SALFIIGVEMAERFAYYGVSSNLITYLTGPL---AQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIY 117 (525)
Q Consensus 41 ~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~l---g~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~ 117 (525)
..+......+.....+.....+++.|+.+.+ +.+....+...+...+...++.+..|++.||+ |||+.+.++.++.
T Consensus 216 ~~~~~~l~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~-g~~~~l~~~~~l~ 294 (396)
T TIGR00882 216 KFWMFVLYVVGVACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRI-GAKNALLIAGTIM 294 (396)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccchhHHHHHHHH
Confidence 3444444444444444445556788877655 45566678888888888888999999999998 9999999988887
Q ss_pred HHHHHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhh-
Q 045562 118 VLGLGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNW- 196 (525)
Q Consensus 118 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~- 196 (525)
.++..+.....+ .+.+++..++.|++..........+..+.+|++. +++..+.
T Consensus 295 ~l~~~~~~~~~~--------------------~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~at~~~~~ 348 (396)
T TIGR00882 295 SVRIIGSSFATT--------------------ALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRL------SATIYLIG 348 (396)
T ss_pred HHHHHHHHhcCC--------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcce------EEEeehHH
Confidence 777766555432 4556777888888765554445556666677666 7777776
Q ss_pred hHHHHhhhhHHHhhhhhhcccccchhhhHHHHHHHHHHHHHH
Q 045562 197 WYFGMCMGTFVTLTVLNYIQDNLNWILGFGIPCILMVIALVV 238 (525)
Q Consensus 197 ~~~~~~~g~~~gp~~~~~l~~~~g~~~~f~~~~~~~~~~~~~ 238 (525)
++....+|..++|.++|++.+.+||+.+|.+.+++.++..++
T Consensus 349 ~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~ 390 (396)
T TIGR00882 349 FQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLI 390 (396)
T ss_pred HHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 677889999999999999999999999999888776655443
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.16 E-value=7.4e-10 Score=118.15 Aligned_cols=179 Identities=15% Similarity=0.067 Sum_probs=124.8
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHH--------
Q 045562 39 WRSALFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAI-------- 110 (525)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~-------- 110 (525)
.+.+|.+.+..+.....++.+..++|.|+.+.+|.+..+.++..+...++..++.+++|+++||+ ++|+..
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~-~~~~~~~~~~~~~~ 338 (465)
T TIGR00894 260 SLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFL-KSSKTLSLTAARKI 338 (465)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCcHHHHHHH
Confidence 35678888888889999999999999999999999999999999999999999999999999997 544211
Q ss_pred HHHHHHHHHHHHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCccccccc
Q 045562 111 IIASLIYVLGLGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLK 190 (525)
Q Consensus 111 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r 190 (525)
..+......+..++..... . .+....++...+.+.+.++..+.......|..|+ . +
T Consensus 339 ~~~~~~~~~~~~~~~~~~~--~---------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~------~ 394 (465)
T TIGR00894 339 FNGIGGLGPGIFAYALPYL--S---------------AAFYLTIIILTLANAVSSGPLAGVLINSLDLAPR-F------L 394 (465)
T ss_pred HHHHHHHHHHHHHHHHHHc--C---------------CchHHHHHHHHHHHHHhhhhhhhhhhchhhcChh-H------H
Confidence 1111111111111111110 0 0123333344444555555555555556666664 5 8
Q ss_pred ceehhhhHHHHhhhhHHHhhhhhhccccc---chhhhHHHHHHHHHHHHHHHHhc
Q 045562 191 SSFFNWWYFGMCMGTFVTLTVLNYIQDNL---NWILGFGIPCILMVIALVVFLLG 242 (525)
Q Consensus 191 ~~~~~~~~~~~~~g~~~gp~~~~~l~~~~---g~~~~f~~~~~~~~~~~~~~~~~ 242 (525)
+.+.++.+...++|+.++|.+.+++.+.. +|..+|.+.++..+++.+.....
T Consensus 395 g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~ 449 (465)
T TIGR00894 395 GFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYLIF 449 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHeeee
Confidence 99999999999999999999999987643 48889988887777766555443
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.15 E-value=8.5e-10 Score=114.86 Aligned_cols=174 Identities=13% Similarity=0.018 Sum_probs=124.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHH-HHHhhhhhHHHHhhhccchHHHHHHHHHHHHHH
Q 045562 42 ALFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSG-VASLLPLFGAFLADSFLGRYRAIIIASLIYVLG 120 (525)
Q Consensus 42 ~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~-~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~~~ 120 (525)
.+..+...++.........++.+.|+.| .|++..+.+.+...... ...++.+++|++.||+ |+|+.+..+..+..+.
T Consensus 210 ~~~~~~~~~l~~~~~~~~~~~~~~~l~~-~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~-g~~~~l~~~~~~~~~~ 287 (390)
T TIGR02718 210 AWSLLALALLSAMTAVSGFGLSKLYLVD-AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRA-GLWRTFILGVGLAGSL 287 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHh-cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHH
Confidence 4444445555556666666788899975 79999999998887764 5566788999999998 9999998877665333
Q ss_pred HHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccC-CCcccccccceehhhhHH
Q 045562 121 LGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDS-QHPLESKLKSSFFNWWYF 199 (525)
Q Consensus 121 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~-~~~~~~~~r~~~~~~~~~ 199 (525)
......... .... ......+....+.+++.+...+...+...+..++ ++ +++.++..+.
T Consensus 288 ~~~~~~~~~-~~~~-------------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~ 347 (390)
T TIGR02718 288 ALLWFAQAA-FWLA-------------PGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQ------AGTDVTAVQS 347 (390)
T ss_pred HHHHHHHHH-cccC-------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccc------hHHHHHHHHH
Confidence 322221111 0000 0123334444555666777777777887777766 55 8999999999
Q ss_pred HHhhhhHHHhhhhhhcccccchhhhHHHHHHHHHHHHH
Q 045562 200 GMCMGTFVTLTVLNYIQDNLNWILGFGIPCILMVIALV 237 (525)
Q Consensus 200 ~~~~g~~~gp~~~~~l~~~~g~~~~f~~~~~~~~~~~~ 237 (525)
..++|..+||.++|++.++.||+..|.+.+++.+++.+
T Consensus 348 ~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~ 385 (390)
T TIGR02718 348 TRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAIL 385 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999887766655544
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.14 E-value=5e-10 Score=117.71 Aligned_cols=166 Identities=7% Similarity=-0.005 Sum_probs=116.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHH-HHHHHHHH
Q 045562 40 RSALFIIGVEMAERFAYYGVSSNLITYLTG-PLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRA-IIIASLIY 117 (525)
Q Consensus 40 ~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~-~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~-~~~~~~~~ 117 (525)
+..+......++....++++..++|.|+++ ..|.+..+.+.......++..++.+++|+++||+ +||+. +....++.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~-~~r~~~~~~~~~~~ 320 (412)
T TIGR02332 242 PAIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRL-KERKHHTALPYLFA 320 (412)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhccc-CccHHHHHHHHHHH
Confidence 345666677777888889999999999986 3577888889888899999999999999999998 86664 33333333
Q ss_pred HHHHHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhh
Q 045562 118 VLGLGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWW 197 (525)
Q Consensus 118 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 197 (525)
.++.++ ..... . ....+++..+.++|.....+.......|.+|+++ |++++++.
T Consensus 321 ~~~~~~-~~~~~------------------~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~------~~~a~g~~ 374 (412)
T TIGR02332 321 AAGWLL-ASATD------------------H-NLIQLLGIIMASMGSFSAMAIFWTTPDQSISLQA------RAIAIAVI 374 (412)
T ss_pred HHHHHH-HHhcC------------------C-HHHHHHHHHHHHHHhhhhhhHHHhhcccccchHH------HHHHHHHH
Confidence 333222 11110 0 1111222223333333333444455567888888 99999999
Q ss_pred HHHHhhhhHHHhhhhhhcccccc-hhhhHHHHHHHH
Q 045562 198 YFGMCMGTFVTLTVLNYIQDNLN-WILGFGIPCILM 232 (525)
Q Consensus 198 ~~~~~~g~~~gp~~~~~l~~~~g-~~~~f~~~~~~~ 232 (525)
+...++|..++|.+.+.+.+..| |+..|.+.++..
T Consensus 375 ~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~~~~~~ 410 (412)
T TIGR02332 375 NATGNIGSALSPFLIGILKDATGSFNSGLWFVAALL 410 (412)
T ss_pred HHhhhhhhhhhhhhcccccccCCCCchhHHHHHHHH
Confidence 99999999999999999999875 999988766543
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.14 E-value=7.8e-10 Score=105.72 Aligned_cols=182 Identities=11% Similarity=0.088 Sum_probs=137.7
Q ss_pred cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHH
Q 045562 35 KYGGWRSALFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIAS 114 (525)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~ 114 (525)
.+...+..|.+....+....+.+=+...-|.+.++.+|+|+.+++-+.+.....+++..++.|.++||+ ||+-..+.+.
T Consensus 259 v~~f~ppfw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~-G~n~~wv~~a 337 (459)
T KOG4686|consen 259 VNTFYPPFWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKY-GFNLWWVASA 337 (459)
T ss_pred ccccCccHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhh-cceehhHHHH
Confidence 344455678777777776666665556677899999999999999999999999999999999999999 9988777664
Q ss_pred -HHHHHHHHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCccccccccee
Q 045562 115 -LIYVLGLGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSF 193 (525)
Q Consensus 115 -~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 193 (525)
+...++...+.+... .=+.+..++|+.......+.+..++..+|+++ .+++
T Consensus 338 ~~~tl~~H~~l~Ft~l----------------------sPy~~m~~lGLsysllAcslWP~va~~vpE~q------LGTa 389 (459)
T KOG4686|consen 338 CILTLLGHSGLFFTFL----------------------SPYTSMTFLGLSYSLLACSLWPCVASLVPEEQ------LGTA 389 (459)
T ss_pred HHHHHHHhhhHHhhhc----------------------cHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHH------hcch
Confidence 456666666665532 22344456777777766668889999999998 9999
Q ss_pred hhhhHHHHhhhhHHHhhhhhhcccccc---hhhhHHHHHHHH-HHHHHHHHhcccc
Q 045562 194 FNWWYFGMCMGTFVTLTVLNYIQDNLN---WILGFGIPCILM-VIALVVFLLGTKI 245 (525)
Q Consensus 194 ~~~~~~~~~~g~~~gp~~~~~l~~~~g---~~~~f~~~~~~~-~~~~~~~~~~~~~ 245 (525)
++..+...|+|-.+-|+++|++.++-| |--+|.+....+ +....+++...++
T Consensus 390 ygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~aL~svgil~~~N~k 445 (459)
T KOG4686|consen 390 YGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLMALTSVGILFYLNKK 445 (459)
T ss_pred HHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHHHHHHHHHHhheecc
Confidence 999999999999999999999988655 555665554443 3344445554443
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=9e-10 Score=117.63 Aligned_cols=158 Identities=14% Similarity=0.031 Sum_probs=123.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHHHH
Q 045562 41 SALFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVLG 120 (525)
Q Consensus 41 ~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~~~ 120 (525)
.....+...++....+.....+.|.|++..+|.++.+.++......++..++.++.|+++||+ |||+++..+.++..++
T Consensus 262 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-g~~~~~~~~~~~~~~~ 340 (471)
T PRK10504 262 TFSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRF-GYRRVLVATTLGLALV 340 (471)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHHH
Confidence 444555556666666655556788888877899999999988888888888889999999999 9999999888877777
Q ss_pred HHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhhHHH
Q 045562 121 LGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWYFG 200 (525)
Q Consensus 121 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 200 (525)
..++.+.... ...+.+.+..++.|++.+...+..++++.+.+|+++ ++.++++.+..
T Consensus 341 ~~~~~~~~~~-----------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~ 397 (471)
T PRK10504 341 SLLFMLVALL-----------------GWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNL------ASSGNSLLSMI 397 (471)
T ss_pred HHHHHhcccc-----------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHh------ccchHHHHHHH
Confidence 6665543210 112334445667788888888888999999999888 99999999999
Q ss_pred HhhhhHHHhhhhhhcccccchh
Q 045562 201 MCMGTFVTLTVLNYIQDNLNWI 222 (525)
Q Consensus 201 ~~~g~~~gp~~~~~l~~~~g~~ 222 (525)
..+|..+|+.++|.+.+..|+.
T Consensus 398 ~~~g~~ig~~i~g~ll~~~g~~ 419 (471)
T PRK10504 398 MQLSMSIGVTIAGLLLGLFGQQ 419 (471)
T ss_pred HHHHHHHHHHHHHHHHHHhhhh
Confidence 9999999999999887766653
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.2e-09 Score=112.30 Aligned_cols=172 Identities=13% Similarity=-0.140 Sum_probs=126.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHHHH
Q 045562 41 SALFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVLG 120 (525)
Q Consensus 41 ~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~~~ 120 (525)
..+......++.....+....+.|.|+.+++|.++.+.++......++..++.++.|+++||+ |+|+.+..+.++..++
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~-~~~~~~~~~~~~~~~g 294 (406)
T PRK15402 216 RFVAGALALGLVSLPLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRR-PLRSLIRMGLWPMVAG 294 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHH
Confidence 344444444455555566667788888888999999998887777788889999999999998 9999999888877777
Q ss_pred HHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhhHHH
Q 045562 121 LGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWYFG 200 (525)
Q Consensus 121 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 200 (525)
..++........ .+.+.+++..++.|+|.+...+......... ++++ |+++.+.++..
T Consensus 295 ~~~~~~~~~~~~---------------~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~-~~~~------~g~~~~~~~~~ 352 (406)
T PRK15402 295 LLLAALATVISS---------------HAYLWLTAGLSLYAFGIGLANAGLYRLTLFS-SDVS------KGTVSAAMGML 352 (406)
T ss_pred HHHHHHHHHccc---------------ccHHHHHHHHHHHHHHHHHHhhhHHHHHhhh-cccc------ccHHHHHHHHH
Confidence 776665421000 1245566777888888887776666555333 3455 89999999999
Q ss_pred HhhhhHHHhhhhhhcccccchhhhHHHHHHHHHHH
Q 045562 201 MCMGTFVTLTVLNYIQDNLNWILGFGIPCILMVIA 235 (525)
Q Consensus 201 ~~~g~~~gp~~~~~l~~~~g~~~~f~~~~~~~~~~ 235 (525)
..+|..+|+.+.+++.+..++....+..++..++.
T Consensus 353 ~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~ 387 (406)
T PRK15402 353 SMLIFTVGIELSKHAYLGGGNGLFNLFNLANGLLW 387 (406)
T ss_pred HHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHHH
Confidence 99999999999999988888666555544444443
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=8.8e-10 Score=118.08 Aligned_cols=173 Identities=9% Similarity=-0.031 Sum_probs=114.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHH-------HHHHHH
Q 045562 42 ALFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYR-------AIIIAS 114 (525)
Q Consensus 42 ~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~-------~~~~~~ 114 (525)
.|.+.+..+......+.+..++|.|+.+.+|++..+++.+.+.+.++..++.+++|+++||+ |||+ ......
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~-~~r~~~~~r~~~~~~~~ 332 (476)
T PLN00028 254 TWILALTYGYSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVA-ARRFGMRGRLWALWIVQ 332 (476)
T ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-HHhcCcchhHHHHHHHH
Confidence 45444444445555566778899999988999999999999999999999999999999998 8752 222222
Q ss_pred HHHHHHHHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceeh
Q 045562 115 LIYVLGLGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFF 194 (525)
Q Consensus 115 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 194 (525)
.+..+..+++.... +.+..++..++.+++.+...+...+++.+..| ++ |+.+.
T Consensus 333 ~l~~i~~~~~~~~~--------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~------~g~~~ 385 (476)
T PLN00028 333 TLGGVFCIWLGRAN--------------------SLGAAIVVMILFSIFVQAACGATFGIVPFVSR-RS------LGVIS 385 (476)
T ss_pred HHHHHHHHHhcccc--------------------hHHHHHHHHHHHHHHHHHhhhhhcccCcccCh-hh------chhhh
Confidence 22222222222221 12333344445555544444445555666544 45 89999
Q ss_pred hhhHHHHhhhhHHHhhhhhhcccccchhhhHHHHHHHHHHHHHHHHhcc
Q 045562 195 NWWYFGMCMGTFVTLTVLNYIQDNLNWILGFGIPCILMVIALVVFLLGT 243 (525)
Q Consensus 195 ~~~~~~~~~g~~~gp~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~ 243 (525)
++.+...++|+.++|.+.+ ..+..+|+.+|++.+++.+++.++.++.+
T Consensus 386 g~~~~~g~lg~~i~~~l~~-~~~~~~y~~~f~~~~~~~~i~~~~~~~~~ 433 (476)
T PLN00028 386 GLTGAGGNVGAVLTQLLFF-TGSSYSTETGISLMGVMIIACTLPVAFIH 433 (476)
T ss_pred hhhhccccHHHHHHHHHHH-hcCCccHhhHHHHHHHHHHHHHHHHHhee
Confidence 9988777788877776654 23345699999998877777766666654
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.6e-09 Score=110.57 Aligned_cols=179 Identities=17% Similarity=0.134 Sum_probs=143.5
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHH
Q 045562 39 WRSALFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYV 118 (525)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~ 118 (525)
.+.++..+...++...+.|...+++.+|+++..|+|....+++...+.++..++..++|+++|| +.|+.+.....+.+
T Consensus 210 ~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr--~~~~~l~~~~~l~a 287 (394)
T COG2814 210 RPGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR--GPRRALIAALLLLA 287 (394)
T ss_pred CchHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc--cchhHHHHHHHHHH
Confidence 3467778888888888888888999999999999999999999999999999999999999998 77788877777777
Q ss_pred HHHHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhhH
Q 045562 119 LGLGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWY 198 (525)
Q Consensus 119 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 198 (525)
+....+.+... +.+..++..++.|+..+......+.-.++.. ++. +..+.+++.
T Consensus 288 ~~~l~l~~~~~-------------------~~~~~~~~~~~wg~a~~~~~~~~~~~~a~~~-p~~------~~~a~sl~~ 341 (394)
T COG2814 288 LALLALTFTGA-------------------SPALALALLFLWGFAFSPALQGLQTRLARLA-PDA------ADLAGSLNV 341 (394)
T ss_pred HHHHHHHHhcc-------------------hHHHHHHHHHHHHHHhhhhhhHHHHHhcccC-CCc------hHHHHHHHH
Confidence 66666665532 1455555555667776655444444455522 344 799999999
Q ss_pred HHHhhhhHHHhhhhhhcccccchhhhHHHHHHHHHHHHHHHHhcccc
Q 045562 199 FGMCMGTFVTLTVLNYIQDNLNWILGFGIPCILMVIALVVFLLGTKI 245 (525)
Q Consensus 199 ~~~~~g~~~gp~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~ 245 (525)
...|+|...|..++|.+.+++|+....++.+++.++++...+...++
T Consensus 342 aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~~~~~ 388 (394)
T COG2814 342 AAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLALLSARK 388 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999888887777665553
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=99.13 E-value=1e-08 Score=108.30 Aligned_cols=162 Identities=17% Similarity=0.111 Sum_probs=117.5
Q ss_pred HHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhcc----chHHHHHHHHHHHHHHHHHHHHhhhhccCCCCcc
Q 045562 63 LITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFL----GRYRAIIIASLIYVLGLGLLTLSAVLLSGSTSEC 138 (525)
Q Consensus 63 l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~----Grr~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 138 (525)
...|+.+++|+++++.....+...+.- ...++.|.++|.+. .||+-++++.++..++...++......
T Consensus 12 ~~~~l~~~l~ls~~~~~~~~~~~~lPw-~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~------- 83 (433)
T PF03092_consen 12 IYPFLKDDLGLSPAQLQRLSSLASLPW-SIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASE------- 83 (433)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHhCch-HHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhccccc-------
Confidence 445788999999999887665555443 56788899999982 466666677766655555555432200
Q ss_pred CCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhhHHHHhhhhHHHhhhhhhcccc
Q 045562 139 QNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWYFGMCMGTFVTLTVLNYIQDN 218 (525)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l~~~ 218 (525)
.+.....+..++..+|.........+++.|...++... |+...++.+....+|.+++..+.|++.+.
T Consensus 84 ---------~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~----~g~lqS~~~~~~~~G~lv~~~l~G~l~~~ 150 (433)
T PF03092_consen 84 ---------SSAAIAVVLLFLASFGYAFADVAADALVVELARREPES----RGDLQSFVWGVRSVGSLVGSLLSGPLLDS 150 (433)
T ss_pred ---------chhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCch----hHHHHHHHHHHHHHHHHHHHHhhhhhhhc
Confidence 12344555667778888888889999999998655421 77888888888999999999999999999
Q ss_pred cchhhhHHHHHHHHHHHHHHHHhcccc
Q 045562 219 LNWILGFGIPCILMVIALVVFLLGTKI 245 (525)
Q Consensus 219 ~g~~~~f~~~~~~~~~~~~~~~~~~~~ 245 (525)
.+++..|.+.+++..+..+..+...++
T Consensus 151 ~~~~~~f~i~~~~~~l~~~~~~~~~~e 177 (433)
T PF03092_consen 151 FGPQGVFLISAALPLLMLIVALFLLEE 177 (433)
T ss_pred CCCeEEehHHHHHHHHHHHHHHHhhhh
Confidence 999999998887766665555444443
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.3e-09 Score=114.71 Aligned_cols=148 Identities=16% Similarity=0.022 Sum_probs=109.2
Q ss_pred HHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 045562 53 RFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVLGLGLLTLSAVLLS 132 (525)
Q Consensus 53 ~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~~~~~l~~~~~~~~~ 132 (525)
....+.+..++|.|+.+ .|.+..+.+.......++..++.++.|+++||+ |||+.+..+.++..+...+......
T Consensus 244 ~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~-~~~~~~~~~~~~~~~~~~~~~~~~~--- 318 (426)
T PRK12307 244 FGANWPIFGLLPTYLAG-EGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRI-GLKKTFSIGLLMSFLFIFPLFRIPQ--- 318 (426)
T ss_pred HHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHHcc---
Confidence 33444567789999875 699999999888888899999999999999998 9999998887766555444433211
Q ss_pred CCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhhHHHHhhhhHHHhhhh
Q 045562 133 GSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWYFGMCMGTFVTLTVL 212 (525)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~ 212 (525)
.....+....+..+++..+..+..+.++.|.+|++. |++++|+.+....+|+.++|.+.
T Consensus 319 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~~~~~~~~~gp~~~ 377 (426)
T PRK12307 319 ---------------DNYLLLGACLFGLMATNVGVGGLVPKFLYDYFPLEV------RGLGTGLIYNLAATSGTFNSMAA 377 (426)
T ss_pred ---------------ccHHHHHHHHHHHHHhcccHhHHHHHHHHHhCcHHH------HhhhhhHHHHHHhHHHHHHHHHH
Confidence 001222222222333333444566788899999988 99999999999999999999999
Q ss_pred hhcccccchhhhHH
Q 045562 213 NYIQDNLNWILGFG 226 (525)
Q Consensus 213 ~~l~~~~g~~~~f~ 226 (525)
+++.+.+|+.....
T Consensus 378 g~l~~~~g~~~~~~ 391 (426)
T PRK12307 378 TWLGITMGLGAALT 391 (426)
T ss_pred HHHHHcccHHHHHH
Confidence 99999888765433
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.11 E-value=5.7e-10 Score=113.95 Aligned_cols=155 Identities=12% Similarity=0.061 Sum_probs=127.0
Q ss_pred chHHHHHHHHHHHHHHHHHHH-HHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHH
Q 045562 40 RSALFIIGVEMAERFAYYGVS-SNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYV 118 (525)
Q Consensus 40 ~~~~~~~~~~~~~~~~~y~~~-~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~ 118 (525)
|..+......+......+... .+.|.|.++.+|.+..+.+.+.....++..++.++.|++.||+ |||+.+..+..+..
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~ 288 (365)
T TIGR00900 210 PLLRTLLLLALLFNLVFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYF-KRMALMTGAIFVIG 288 (365)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-chhHHHHHHHHHHH
Confidence 345555555566666666665 7788888877999999999999999999999999999999998 99999988776666
Q ss_pred HHHHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhhH
Q 045562 119 LGLGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWY 198 (525)
Q Consensus 119 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 198 (525)
++..+...... +.+.+++..++.|++.+...+...+++.|.+|+++ |+++++..+
T Consensus 289 ~~~~~~~~~~~-------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~ 343 (365)
T TIGR00900 289 LAILVVGLTPP-------------------NFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAEL------LGRVFGAQF 343 (365)
T ss_pred HHHHHHHhhch-------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HHHHHHHHH
Confidence 66555554321 14666777888999999999999999999999988 999999999
Q ss_pred HHHhhhhHHHhhhhhhcccccc
Q 045562 199 FGMCMGTFVTLTVLNYIQDNLN 220 (525)
Q Consensus 199 ~~~~~g~~~gp~~~~~l~~~~g 220 (525)
...++|..++|.++|++.|++|
T Consensus 344 ~~~~~~~~~g~~~~g~l~~~~g 365 (365)
T TIGR00900 344 SLSHAAWPLGLILAGPLADHLG 365 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999988654
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.6e-09 Score=113.26 Aligned_cols=174 Identities=15% Similarity=0.087 Sum_probs=128.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhc--cccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHH
Q 045562 41 SALFIIGVEMAERFAYYGVSSNLITYLT--GPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYV 118 (525)
Q Consensus 41 ~~~~~~~~~~~~~~~~y~~~~~l~~yl~--~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~ 118 (525)
..+......++..+.+.....+++.|+. ++.+.+....+.+...+........++.|++.||+ ++|+.+..+..+..
T Consensus 207 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~l~~~~~~~~ 285 (395)
T PRK10054 207 ALLWFTCSGFLASFVSGAFASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAA-NIRPLMTAGTLCFV 285 (395)
T ss_pred eehHHHHHHHHHHHHHHHhhhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHccC-CchhHHHHHHHHHH
Confidence 4444445555555555555566677764 24456666777777777777777788999999998 99999998888777
Q ss_pred HHHHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhhH
Q 045562 119 LGLGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWY 198 (525)
Q Consensus 119 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 198 (525)
++...+.+..+ +.+.+++..++.++|.+...|...+.+.+..|++. |+++++..+
T Consensus 286 ~~~~~~~~~~~-------------------~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~------~~~~~~~~~ 340 (395)
T PRK10054 286 IGLVGFIFSGN-------------------SLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGM------KASYFSAQS 340 (395)
T ss_pred HHHHHHHHcch-------------------HHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCccc------ceehHhHHH
Confidence 77766654321 14556677788999988888888999999999888 888888654
Q ss_pred HHHhhhhHHHhhhhhhcccccchhhhHHHHHHHHHHHHHHHHh
Q 045562 199 FGMCMGTFVTLTVLNYIQDNLNWILGFGIPCILMVIALVVFLL 241 (525)
Q Consensus 199 ~~~~~g~~~gp~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~ 241 (525)
...+|..+||.++|++.|+.|....|++.+....++++...+
T Consensus 341 -~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 382 (395)
T PRK10054 341 -LGWLGAAINPLVSGVILTTLPPWSLFVILALAIVAAWLLMLK 382 (395)
T ss_pred -HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHHHHHHh
Confidence 566899999999999999999888888766555555554443
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.08 E-value=6.9e-10 Score=114.80 Aligned_cols=147 Identities=13% Similarity=0.054 Sum_probs=114.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHHHH
Q 045562 41 SALFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVLG 120 (525)
Q Consensus 41 ~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~~~ 120 (525)
..+.+....++....++.+..++| ++.+++|.+..+.+.......++..++.++.|+++||+ |||+.+.......+..
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~ 328 (398)
T TIGR00895 251 ITVLLWLLYFMLLVGVYFLTNWLP-KLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRL-GPRVTALLLLLGAVFA 328 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-chHHHHHHHHHHHHHH
Confidence 344455555566777777778888 66678899999999999999999999999999999998 9985554433333333
Q ss_pred HHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhhHHH
Q 045562 121 LGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWYFG 200 (525)
Q Consensus 121 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 200 (525)
..+.....+ ....++..++.|++.+...+...+++.|.+|+++ |++++++.+..
T Consensus 329 ~~~~~~~~~--------------------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~ 382 (398)
T TIGR00895 329 VLVGSTLFS--------------------PTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAI------RATGVGWAIGI 382 (398)
T ss_pred HHHHHHhhC--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHH------HHHHHHHHHHH
Confidence 222221211 4556667788899999889999999999999988 99999999999
Q ss_pred HhhhhHHHhhhhhhc
Q 045562 201 MCMGTFVTLTVLNYI 215 (525)
Q Consensus 201 ~~~g~~~gp~~~~~l 215 (525)
..+|..+||.+.|++
T Consensus 383 ~~~g~~~g~~~~G~l 397 (398)
T TIGR00895 383 GRLGAIIGPILAGYL 397 (398)
T ss_pred HHHHHHHHHHhHHhc
Confidence 999999999999875
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.2e-09 Score=110.25 Aligned_cols=153 Identities=14% Similarity=0.054 Sum_probs=117.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHHHH
Q 045562 41 SALFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVLG 120 (525)
Q Consensus 41 ~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~~~ 120 (525)
..+.+....++....++++..++|.|+++ .|.+..+.+...+...++..++.++.|+++||+.+||+.+..+.++.+++
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~lp~~~~~-~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~ 276 (355)
T TIGR00896 198 LAWQVTVFFGLQSGLYYSLIGWLPAILIS-HGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVG 276 (355)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHH
Confidence 44555555556677788888999999975 79999999999999999999999999999999845666777777777777
Q ss_pred HHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhhHHH
Q 045562 121 LGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWYFG 200 (525)
Q Consensus 121 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 200 (525)
.+.+.+... .... ...++.|++.+...|...+.+.+..++++. ++..+++.+..
T Consensus 277 ~~~~~~~~~--------------------~~~~-~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~-----~g~~~~~~~~~ 330 (355)
T TIGR00896 277 LCGLLFAPM--------------------HGLW-AWALVLGLGQGGAFPLALTLIGLRSRQAAQ-----AAALSAMAQSI 330 (355)
T ss_pred HHHHHHhhh--------------------hHHH-HHHHHHHHhhhhHhHHHHHHHHHhccCHHH-----HHHHHHHHHHH
Confidence 666655422 1111 134678999999888877777766654331 68888888888
Q ss_pred HhhhhHHHhhhhhhcccccc
Q 045562 201 MCMGTFVTLTVLNYIQDNLN 220 (525)
Q Consensus 201 ~~~g~~~gp~~~~~l~~~~g 220 (525)
..+|..++|.+.|++.|+.|
T Consensus 331 ~~~~~~~gp~~~G~l~~~~g 350 (355)
T TIGR00896 331 GYLLAALGPLFVGVLHDISG 350 (355)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 89999999999999998776
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=4.3e-09 Score=109.33 Aligned_cols=171 Identities=12% Similarity=0.024 Sum_probs=116.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHHHHH
Q 045562 42 ALFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVLGL 121 (525)
Q Consensus 42 ~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~~~~ 121 (525)
.+..+...++.....+....++++|+.+.+|.+..+.+.......++..++.++.|+++||+ |+|+.+..+..+.+++.
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~-~~~~~~~~~~~~~~i~~ 279 (382)
T PRK10091 201 PWLIFAATMFGNAGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRY-SPLRIAAVTDFIIVLAL 279 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheecccc-CchhHHHHHHHHHHHHH
Confidence 34444444444455555566778888888999999999999999999999999999999998 99999998887777776
Q ss_pred HHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccc-cCCCcccccccceehhhhHHH
Q 045562 122 GLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQF-DSQHPLESKLKSSFFNWWYFG 200 (525)
Q Consensus 122 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~-~~~~~~~~~~r~~~~~~~~~~ 200 (525)
+++....+ +.+..++..++.+++..+..+.......+.. |++. ++.+ ..+..
T Consensus 280 ~~~~~~~~-------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~------~~~~--~~~~~ 332 (382)
T PRK10091 280 LMLFFFGG-------------------MKTASLIFAFICCAGLFALSAPLQILLLQNAKGGEL------LGAA--GGQIA 332 (382)
T ss_pred HHHHHHHh-------------------hHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchH------HHHH--HHHHH
Confidence 55543221 0233344444555554444443343333333 3333 4433 33566
Q ss_pred HhhhhHHHhhhhhhcccc-cchhhhHHHHHHHHHHHHHHHH
Q 045562 201 MCMGTFVTLTVLNYIQDN-LNWILGFGIPCILMVIALVVFL 240 (525)
Q Consensus 201 ~~~g~~~gp~~~~~l~~~-~g~~~~f~~~~~~~~~~~~~~~ 240 (525)
..+|..+||.++|++.+. .+|+..+.+.++..++.+..+.
T Consensus 333 ~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (382)
T PRK10091 333 FNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSLL 373 (382)
T ss_pred HHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHHHH
Confidence 789999999999998885 6899999988766665544443
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.6e-09 Score=114.14 Aligned_cols=161 Identities=12% Similarity=0.064 Sum_probs=112.7
Q ss_pred HHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhccCCCCccC
Q 045562 60 SSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVLGLGLLTLSAVLLSGSTSECQ 139 (525)
Q Consensus 60 ~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 139 (525)
..+.|.++ +++|.+.....+......+...++.+++|+++||+ |||+.++.+.++.+++.+++......+.
T Consensus 291 ~~~~p~i~-~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~-g~r~~~i~~~~~~~v~~~~l~~~~~~~~------- 361 (479)
T PRK10077 291 LYYAPEIF-KTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMAIGMFSLGTAFYTQA------- 361 (479)
T ss_pred HHHHHHHH-HHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHh-cChHHHHHhHHHHHHHHHHHHHHHhcCc-------
Confidence 33445444 56888877777777777888889999999999998 9999999999988888777764422110
Q ss_pred CCCcCCCchhHHHHHHHHHHHHhcccc-CccchhhhhhccccCCCcccccccceehhhhHHHHhhhhHHHhhhhh-----
Q 045562 140 NTSCSANQFQVIFFFFSLYLIALGQGG-HKPCVQAFGADQFDSQHPLESKLKSSFFNWWYFGMCMGTFVTLTVLN----- 213 (525)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~l~g~g~g~-~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~----- 213 (525)
. ........++.+++.+. ..|..++++.|.+|+++ |++++++.+...++|..+++.+.+
T Consensus 362 --------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~------r~~~~g~~~~~~~~g~~~~~~~~p~~~~~ 426 (479)
T PRK10077 362 --------P-GIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAI------RGKALAIAVAAQWIANYFVSWTFPMMDKN 426 (479)
T ss_pred --------c-cHHHHHHHHHHHHHHhccccchhHHHhHhhCChhH------HHHHHHHHHHHHHHHHHHHHHHhHHHHhc
Confidence 1 11222233333333332 34778899999999988 999999999988888888755544
Q ss_pred -hcccccchhhhHHHHHHHHHHHHHHHHhccc
Q 045562 214 -YIQDNLNWILGFGIPCILMVIALVVFLLGTK 244 (525)
Q Consensus 214 -~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~ 244 (525)
++.++.+|+..|++.++..+++.+..+...+
T Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (479)
T PRK10077 427 SWLVAHFHNGFSYWIYGCMGVLAALFMWKFVP 458 (479)
T ss_pred cchhhhccCccHHHHHHHHHHHHHHHHHhccc
Confidence 4556788998888877665555555544444
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=5e-09 Score=110.99 Aligned_cols=167 Identities=13% Similarity=0.083 Sum_probs=124.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-ccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHHHH
Q 045562 42 ALFIIGVEMAERFAYYGVSSNLITYL-TGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVLG 120 (525)
Q Consensus 42 ~~~~~~~~~~~~~~~y~~~~~l~~yl-~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~~~ 120 (525)
.+......++.....++...+++.|+ ++.+|+++.+.+.....+.++..++.+++|++.||+ |||+++..+.++..++
T Consensus 260 ~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~-g~~~~l~~~~~~~~~~ 338 (438)
T PRK10133 260 WRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-APHKVLAAYALIAMAL 338 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHH
Confidence 33344444555566666777888896 567899999999999999999999999999999998 9999998887766655
Q ss_pred HHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhhHHH
Q 045562 121 LGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWYFG 200 (525)
Q Consensus 121 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 200 (525)
..+..+... . ..+....+.|++.+...|+..+...+.+|++. +.+.++...
T Consensus 339 ~~~~~~~~~--------------------~-~~~~~~~l~glg~~~i~P~~~s~a~~~~~~~~-------~~as~l~~~- 389 (438)
T PRK10133 339 CLISAFAGG--------------------H-VGLIALTLCSAFMSIQYPTIFSLGIKNLGQDT-------KYGSSFIVM- 389 (438)
T ss_pred HHHHHHcCC--------------------h-HHHHHHHHHHHHHHHHHHHHHHHHHcccchhh-------ccchhHHhH-
Confidence 544433221 1 12445667899999999999999999988643 556665543
Q ss_pred HhhhhHHHhhhhhhcccccc-hhhhHHHHHHHHHHHHHH
Q 045562 201 MCMGTFVTLTVLNYIQDNLN-WILGFGIPCILMVIALVV 238 (525)
Q Consensus 201 ~~~g~~~gp~~~~~l~~~~g-~~~~f~~~~~~~~~~~~~ 238 (525)
..+|+.++|.+.|++.+..| -+..|++..++.+..+..
T Consensus 390 ~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~~~~~~~ 428 (438)
T PRK10133 390 TIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIF 428 (438)
T ss_pred HhccchHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHH
Confidence 44688889999999999887 788888766555444333
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.03 E-value=3e-09 Score=107.87 Aligned_cols=178 Identities=16% Similarity=0.151 Sum_probs=145.4
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHH
Q 045562 39 WRSALFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYV 118 (525)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~ 118 (525)
.+++...++..++.+=+.-.+...-..|...++|++..+..++.....+...++++++|+|.||+ |.|+++..+++++.
T Consensus 251 ~~~i~~FLiA~~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rf-g~k~vl~~~lvi~~ 329 (438)
T COG2270 251 RKNLVLFLIARFFYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERF-GSKPVLMIGLVILS 329 (438)
T ss_pred ccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCceeehHHHHHHH
Confidence 34677677777776666667777888899999999999999999999999999999999999999 99999999988877
Q ss_pred HHHHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhhH
Q 045562 119 LGLGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWY 198 (525)
Q Consensus 119 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 198 (525)
+..+...+... ..-+.+.-.+.|+..|+.+...-++.++.+|+++ -++.+|+++
T Consensus 330 ~~~~~~~~~~~--------------------~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k------~~~fFglya 383 (438)
T COG2270 330 IAALYLIFLEG--------------------ELDFWILGLLVGTSLGGAQASSRSYLARLVPKGK------EGRFFGLYA 383 (438)
T ss_pred HHHHHHHHccc--------------------cHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCcc------ccceeehhh
Confidence 76655554432 2344455568899999999999999999999998 899999999
Q ss_pred HHHhhhhHHHhhhhhhcccccc-hhhhHHHHHHHHHHHHHHHHhcc
Q 045562 199 FGMCMGTFVTLTVLNYIQDNLN-WILGFGIPCILMVIALVVFLLGT 243 (525)
Q Consensus 199 ~~~~~g~~~gp~~~~~l~~~~g-~~~~f~~~~~~~~~~~~~~~~~~ 243 (525)
.....+..+||...+.+.+-+| -|..+....++..+++++++..+
T Consensus 384 ltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~L~~v~ 429 (438)
T COG2270 384 LTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLLLLRVK 429 (438)
T ss_pred hhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhhEEeec
Confidence 9999999999999998877665 77777666666666666555544
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.03 E-value=7e-09 Score=108.53 Aligned_cols=157 Identities=13% Similarity=0.130 Sum_probs=106.1
Q ss_pred HHHHHHhccccCCChHHHHHHHHHHH-HHHHhhhhhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhccCCCCccC
Q 045562 61 SNLITYLTGPLAQSTATAAENVNAWS-GVASLLPLFGAFLADSFLGRYRAIIIASLIYVLGLGLLTLSAVLLSGSTSECQ 139 (525)
Q Consensus 61 ~~l~~yl~~~lg~s~~~~~~~~~~~~-~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 139 (525)
.+.+.|+.+++|++..+.+++..... .+..++.+++|++.||+ |||+.+..+.++..+..+.+......+
T Consensus 230 ~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~-g~~~~l~~~~~~~~l~~l~~~~~~~~~-------- 300 (402)
T PRK11902 230 SLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRL-GLYRSLMLFGVLQAVSNLGYWVLAVTP-------- 300 (402)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHhcC--------
Confidence 44556777789999999998876654 45788899999999998 999988877766555544332211100
Q ss_pred CCCcCCCchhHHHHHHHH----HHHHhccccCccchhhhhhccccCCCcccccccceehhhhHHHHhhhhHHHhhhhhhc
Q 045562 140 NTSCSANQFQVIFFFFSL----YLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWYFGMCMGTFVTLTVLNYI 215 (525)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~----~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l 215 (525)
.+.+.+++.. +..|++.+...+....++.+.+|.++ ++.+....++|..+++.++|++
T Consensus 301 --------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~l~~~~~~~~~G~l 362 (402)
T PRK11902 301 --------KHLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFSATQ----------YALLSALASVGRVYVGPTSGYL 362 (402)
T ss_pred --------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHH----------HHHHHHHHHHHHHHHHHHHHHH
Confidence 0123334333 34455566556666667776666443 3455555567777667789999
Q ss_pred ccccchhhhHHHHHHHHHHHHHHHHhccc
Q 045562 216 QDNLNWILGFGIPCILMVIALVVFLLGTK 244 (525)
Q Consensus 216 ~~~~g~~~~f~~~~~~~~~~~~~~~~~~~ 244 (525)
.|.+||+..|.+.+++.+++++..+...+
T Consensus 363 ~~~~G~~~~f~~~~~~~~~~~~~~~~~~~ 391 (402)
T PRK11902 363 VEAYGWPGFYLMTVVIALPGLALLWLMRG 391 (402)
T ss_pred HHHhChHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999988777776666554444
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.03 E-value=3.2e-09 Score=111.99 Aligned_cols=162 Identities=15% Similarity=0.095 Sum_probs=121.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHHH
Q 045562 40 RSALFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVL 119 (525)
Q Consensus 40 ~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~~ 119 (525)
|..+..+...++.....+....+.+.|.+..++ +....+.+.....++..++.++.|+++||+ |||+++..+.++.++
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-g~~~~~~~~~~~~~~ 299 (437)
T TIGR00792 222 DQLLILCLAYLFYNLAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKF-GRKILFAGGILLMVL 299 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHH
Confidence 445556666666667766665666666665666 555667777777888999999999999999 999999999888877
Q ss_pred HHHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcc-cccccceehhhhH
Q 045562 120 GLGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPL-ESKLKSSFFNWWY 198 (525)
Q Consensus 120 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~-~~~~r~~~~~~~~ 198 (525)
+.+++.+... +.+.+++..++.|++.+...+..+++++|..|.++.+ ....++.++++++
T Consensus 300 ~~~~~~~~~~-------------------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~ 360 (437)
T TIGR00792 300 GYLIFFFAGS-------------------NLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRT 360 (437)
T ss_pred HHHHHHHcch-------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHH
Confidence 7766654321 1455566677888999888899999999998743210 0112688899999
Q ss_pred HHHhhhhHHHhhhhhhcccccchh
Q 045562 199 FGMCMGTFVTLTVLNYIQDNLNWI 222 (525)
Q Consensus 199 ~~~~~g~~~gp~~~~~l~~~~g~~ 222 (525)
....+|..+++.+.|++.+..||.
T Consensus 361 ~~~~~g~~lg~~i~g~ll~~~G~~ 384 (437)
T TIGR00792 361 FVRKLGQALAGFLVGLILGIIGYV 384 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCC
Confidence 999999999999999998877764
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.8e-09 Score=115.42 Aligned_cols=156 Identities=12% Similarity=0.090 Sum_probs=128.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHHH
Q 045562 40 RSALFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVL 119 (525)
Q Consensus 40 ~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~~ 119 (525)
|+.+......++..+.+++...++|.|+++.+|.++.+.++......++..++.++.|++.||+ |||+.+..+..+..+
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~g~~~~~~ 333 (485)
T TIGR00711 255 RNFTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKI-DPRKLVTIGLILYAV 333 (485)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CcHHHHHHHHHHHHH
Confidence 3455556666777788888888999999999999999999999999999999999999999998 999999998888877
Q ss_pred HHHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhhHH
Q 045562 120 GLGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWYF 199 (525)
Q Consensus 120 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 199 (525)
+..++....... ...+.++...++.|+|.+...+.......+.+|+++ |+++.++++.
T Consensus 334 ~~~~~~~~~~~~----------------~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~ 391 (485)
T TIGR00711 334 GFYWRAFTFTPD----------------TPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHK------IARGSSLSNF 391 (485)
T ss_pred HHHHHhccCCCC----------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH------HhHHHHHHHH
Confidence 777665321100 124555666778899998887777787888899888 9999999999
Q ss_pred HHhhhhHHHhhhhhhcccc
Q 045562 200 GMCMGTFVTLTVLNYIQDN 218 (525)
Q Consensus 200 ~~~~g~~~gp~~~~~l~~~ 218 (525)
..++|..+|+.+.+.+.++
T Consensus 392 ~~~~g~~ig~~i~g~~~~~ 410 (485)
T TIGR00711 392 TRQLGGSIGTALITTILTN 410 (485)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999987764
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=7e-09 Score=109.31 Aligned_cols=187 Identities=12% Similarity=0.075 Sum_probs=125.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHHH
Q 045562 40 RSALFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVL 119 (525)
Q Consensus 40 ~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~~ 119 (525)
+.+|.+.+.+++...++.++..++|.|+++.+. ............+...+.++++|+++||+ |+||++.++.+..++
T Consensus 252 ~~~Wllslly~~tFG~fvg~s~~lp~~~~~~~~--~~~~l~~~~l~~l~~~l~rplgG~LADRi-G~~~vl~~~~i~~~i 328 (462)
T PRK15034 252 LHLWLLSLLYLATFGSFIGFSAGFAMLAKTQFP--DVNILRLAFFGPFIGAIARSVGGAISDKF-GGVRVTLINFIFMAI 328 (462)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--hHHHHHHHHHHHHHHHHHHHhhHHHHHhc-CchHHHHHHHHHHHH
Confidence 357777777777666666677799999987653 33332223344677889999999999999 999999988877666
Q ss_pred HHHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcc--------------
Q 045562 120 GLGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPL-------------- 185 (525)
Q Consensus 120 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~-------------- 185 (525)
+......... ... ..+++.+.+..+.+.++.|.-..+...++.+.+|+++.+
T Consensus 329 ~~~~~~l~lp-~~~-------------~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~ 394 (462)
T PRK15034 329 FSALLFLTLP-GTG-------------SGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQR 394 (462)
T ss_pred HHHHHHHHhc-ccc-------------ccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhHHhh
Confidence 6544332211 000 022455555555555666666667788888888741000
Q ss_pred -cccccceehhhhHHHHhhhhHHHhhhhhhcccccc-hhhhHHHHHHHHHHHHHHHHhcc
Q 045562 186 -ESKLKSSFFNWWYFGMCMGTFVTLTVLNYIQDNLN-WILGFGIPCILMVIALVVFLLGT 243 (525)
Q Consensus 186 -~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l~~~~g-~~~~f~~~~~~~~~~~~~~~~~~ 243 (525)
.++.-+.+.|+......+|+.+-|.+.+...+.+| +...|+...+..++++++.+...
T Consensus 395 ~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~y 454 (462)
T PRK15034 395 EAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWLVY 454 (462)
T ss_pred HHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 00125678888888899999999988777766655 88888888877777776655543
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.3e-08 Score=106.31 Aligned_cols=166 Identities=7% Similarity=-0.073 Sum_probs=118.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHHHH
Q 045562 41 SALFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVLG 120 (525)
Q Consensus 41 ~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~~~ 120 (525)
.++......+......++...++++++.+++|++..+.+.+...+.++..++.++.|++.||. +|+..+....+.....
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~-~~~~l~~~~~~~~~~~ 295 (394)
T PRK10213 217 GVMAGMIAIFMSFAGQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRS-VKLALAGAPLVLAVSA 295 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhcc-chhHHHHHHHHHHHHH
Confidence 344444444444455555566664444567899999999999999999999999999999996 6554444333333333
Q ss_pred HHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhhHHH
Q 045562 121 LGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWYFG 200 (525)
Q Consensus 121 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 200 (525)
..+.....+ .+.+.+..++.|++.+...+..++++.+..|++ +++..+..+..
T Consensus 296 ~~l~~~~~~--------------------~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~ 348 (394)
T PRK10213 296 LVLTLWGSD--------------------KIVATGVAIIWGLTFALVPVGWSTWITRSLADQ-------AEKAGSIQVAV 348 (394)
T ss_pred HHHHHHhhh--------------------HHHHHHHHHHHHHHHHhhhHHHHHHHHHHCccc-------HHHHHHHHHHH
Confidence 333333222 456666778889999998888888888888743 45666777778
Q ss_pred HhhhhHHHhhhhhhcccccchhhhHHHHHHHHHH
Q 045562 201 MCMGTFVTLTVLNYIQDNLNWILGFGIPCILMVI 234 (525)
Q Consensus 201 ~~~g~~~gp~~~~~l~~~~g~~~~f~~~~~~~~~ 234 (525)
.++|..+||.++|++.+..|++..+...+++.++
T Consensus 349 ~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~~~ 382 (394)
T PRK10213 349 IQLANTCGAAIGGYALDNIGLTSPLMLSGTLMLL 382 (394)
T ss_pred HHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHH
Confidence 8999999999999999999999888887655443
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.00 E-value=3.3e-09 Score=114.47 Aligned_cols=169 Identities=16% Similarity=0.121 Sum_probs=110.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccccCCChHHHHH------------HHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHH
Q 045562 47 GVEMAERFAYYGVSSNLITYLTGPLAQSTATAAE------------NVNAWSGVASLLPLFGAFLADSFLGRYRAIIIAS 114 (525)
Q Consensus 47 ~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~------------~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~ 114 (525)
...+...+.+|++..+.|.+++ +.|++..+.+. ......++..++.++.++++||+ |||++++.+.
T Consensus 295 ~~~~~~~~~~y~~~~~~p~i~~-~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~-gRR~~l~~~~ 372 (502)
T TIGR00887 295 GSWFLLDIAFYGVNLNQKVILS-AIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDII-GRKPIQLMGF 372 (502)
T ss_pred HHHHHHHHHHHccccccHHHHH-HHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-cchhHHHHHH
Confidence 3444566778888888888885 67776542211 12223345556778899999999 9999998888
Q ss_pred HHHHHHHHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceeh
Q 045562 115 LIYVLGLGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFF 194 (525)
Q Consensus 115 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 194 (525)
.+..++..++........ . ...+....+...++..+..+..+.+.+|.+|++. |++++
T Consensus 373 ~~~~~~~~~l~~~~~~~~---------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~------R~~~~ 430 (502)
T TIGR00887 373 FILTVLFFVLGFAYNHLS---------------T-HGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRY------RSTAH 430 (502)
T ss_pred HHHHHHHHHHHHHHHhcc---------------h-hHHHHHHHHHHHHHhcCCCchhhhhhhccCchhH------HHHHH
Confidence 777766655554321000 0 1111111112222223344566778899999999 99999
Q ss_pred hhhHHHHhhhhHHHhhhhhhcccc----------cchhhhHHHHHHHHHHHHHHH
Q 045562 195 NWWYFGMCMGTFVTLTVLNYIQDN----------LNWILGFGIPCILMVIALVVF 239 (525)
Q Consensus 195 ~~~~~~~~~g~~~gp~~~~~l~~~----------~g~~~~f~~~~~~~~~~~~~~ 239 (525)
++.+....+|+.++|.+.+++.+. .++...|++.++..+++.+..
T Consensus 431 g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~ 485 (502)
T TIGR00887 431 GISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILFT 485 (502)
T ss_pred HHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHHh
Confidence 999999999999999999988773 344556666665555554433
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=8e-09 Score=108.12 Aligned_cols=153 Identities=15% Similarity=0.108 Sum_probs=110.3
Q ss_pred HHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhccCCCCcc
Q 045562 59 VSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVLGLGLLTLSAVLLSGSTSEC 138 (525)
Q Consensus 59 ~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 138 (525)
...++|.|+++..+ ++.+.+++.+...........+.+++.||..+.++.+..+..+..++..++...++
T Consensus 227 ~~~~~p~~~~~~~~-~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~--------- 296 (400)
T PRK11646 227 VMLMLPIMVNDIAG-SPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVSN--------- 296 (400)
T ss_pred HHHhhhhhHHhhcC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhh---------
Confidence 44678888876655 66778888777766666555555666665437677777777777777666655533
Q ss_pred CCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhhHHHHhhhhHHHhhhhhhcccc
Q 045562 139 QNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWYFGMCMGTFVTLTVLNYIQDN 218 (525)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l~~~ 218 (525)
.+.+.+...+.+++.+...|...+++.|.+|+++ |++++++++....+|..+||.++|++.++
T Consensus 297 -----------~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~------~g~~~g~~~~~~~~g~~ig~~l~G~l~~~ 359 (400)
T PRK11646 297 -----------LQQLFTLICLFYIGSIIAEPARETLSASLADARA------RGSYMGFSRLGLALGGAIGYIGGGWLFDL 359 (400)
T ss_pred -----------HHHHHHHHHHHHHHHHHHHccHHHHHHhcCCccc------chhhhhHHHHHHHHHHHhcccchHHHHHH
Confidence 4445556667788888888888999999999988 99999999999999999999999999886
Q ss_pred c---c-hhhhHHHHHHHHHHHHHH
Q 045562 219 L---N-WILGFGIPCILMVIALVV 238 (525)
Q Consensus 219 ~---g-~~~~f~~~~~~~~~~~~~ 238 (525)
. + ...+|.+..++.+++.+.
T Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~ 383 (400)
T PRK11646 360 GKALNQPELPWMMLGIIGLITLLA 383 (400)
T ss_pred HhhcCCcchHHHHHHHHHHHHHHH
Confidence 4 2 345555544444444333
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=98.99 E-value=5.8e-09 Score=112.24 Aligned_cols=173 Identities=14% Similarity=0.120 Sum_probs=144.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHHHH
Q 045562 41 SALFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVLG 120 (525)
Q Consensus 41 ~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~~~ 120 (525)
.+..++...++.++....+...+|.+..+.+|.++...|++.+++.++..++.++.+++.+|+ ++++.+..+.++++++
T Consensus 219 ~l~~~l~~~~~~~l~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~-~~~~lv~~~~~~~a~~ 297 (524)
T PF05977_consen 219 PLRSVLLRSFLFNLFASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRL-SSRRLVLLASLLFALA 297 (524)
T ss_pred HHHHHHHHHHHHHHhhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhccc-CcchhhHHHHHHHHHH
Confidence 343344444444555555667789999999999999999999999999999999999999998 9999998888888888
Q ss_pred HHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhhHHH
Q 045562 121 LGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWYFG 200 (525)
Q Consensus 121 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 200 (525)
.+.+++..+ .+..++..++.|++.........+.+-+..|++. |+|++++++..
T Consensus 298 ~~~lal~~~--------------------~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~------~GRv~si~~~~ 351 (524)
T PF05977_consen 298 LLLLALSPS--------------------FWLALIALFLAGAAWIIANSSLNTLVQLSVPDWV------RGRVFSIYQMV 351 (524)
T ss_pred HHHHhcchH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HhHHHHHHHHH
Confidence 877777654 6777778888899988888888899999999998 99999999999
Q ss_pred HhhhhHHHhhhhhhcccccchhhhHHHHHHHHHHHHHHHH
Q 045562 201 MCMGTFVTLTVLNYIQDNLNWILGFGIPCILMVIALVVFL 240 (525)
Q Consensus 201 ~~~g~~~gp~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~ 240 (525)
...+..+|..+.|++.+.+|-+.++.+.++..+++.++.+
T Consensus 352 ~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~~ 391 (524)
T PF05977_consen 352 FFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIAL 391 (524)
T ss_pred HHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998887776665555443
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=4.3e-09 Score=113.33 Aligned_cols=154 Identities=9% Similarity=-0.036 Sum_probs=127.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHHH
Q 045562 40 RSALFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVL 119 (525)
Q Consensus 40 ~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~~ 119 (525)
|.........++....+++...++|.|+++.+|.|+.+.+.....+.+...++.++.|++.||+ |||+.+..+.++..+
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~g~~~~~~ 337 (495)
T PRK14995 259 RIILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRL-GLRLVATGGMALSAL 337 (495)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHH
Confidence 3445555666667777888888999999999999999999999999999999999999999999 999999888888777
Q ss_pred HHHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhhHH
Q 045562 120 GLGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWYF 199 (525)
Q Consensus 120 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 199 (525)
+..++..... . .+.+..+...++.|+|.|...+.....+.+.+|+++ ++.+.++++.
T Consensus 338 ~~~~l~~~~~-~----------------~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~------~g~~~~~~~~ 394 (495)
T PRK14995 338 SFYGLAMTDF-S----------------TQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEK------AAAAGAIETM 394 (495)
T ss_pred HHHHHHHhcC-C----------------CchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHh------cchHHHHHHH
Confidence 7766554321 0 113445567788899999988888888899999888 9999999999
Q ss_pred HHhhhhHHHhhhhhhccc
Q 045562 200 GMCMGTFVTLTVLNYIQD 217 (525)
Q Consensus 200 ~~~~g~~~gp~~~~~l~~ 217 (525)
..++|..+|+.+.+.+.+
T Consensus 395 ~~~lG~~~G~ai~g~i~~ 412 (495)
T PRK14995 395 AYELGAGLGIAIFGLLLS 412 (495)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999998765
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.9e-08 Score=103.80 Aligned_cols=164 Identities=10% Similarity=0.063 Sum_probs=117.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHHHH
Q 045562 41 SALFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVLG 120 (525)
Q Consensus 41 ~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~~~ 120 (525)
..+...+...+.....+....+.|.|+.+.+|.++.+.+.+.....++..++.++.|++.||+ |||+.+..+..+..++
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~-~~~~~~~~~~~~~~~~ 285 (385)
T TIGR00710 207 MFWGYALIYGASFGGFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKW-GAKSLLRMGLILFAVS 285 (385)
T ss_pred hhHHHHHHHHHHHHHHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHH
Confidence 344444455555666677777889999889999999999999999999999999999999998 9999998887777777
Q ss_pred HHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhhHHH
Q 045562 121 LGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWYFG 200 (525)
Q Consensus 121 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 200 (525)
.+++........ .....++...++.|++.+...+.......|..| ++ |+++.+..+..
T Consensus 286 ~~~~~~~~~~~~---------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~------~g~~~~~~~~~ 343 (385)
T TIGR00710 286 AVLLEITAILGL---------------GSWAMIIGPMMFVGIGNSMISSIAMAYALEDFP-HV------AGTASALFGTL 343 (385)
T ss_pred HHHHHHHHHhcc---------------chHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-cc------chHHHHHHHHH
Confidence 666655432100 113444555667888888888888888888876 45 78999987776
Q ss_pred Hh-hhhHHHhhhhhhcccccchhhhHHHH
Q 045562 201 MC-MGTFVTLTVLNYIQDNLNWILGFGIP 228 (525)
Q Consensus 201 ~~-~g~~~gp~~~~~l~~~~g~~~~f~~~ 228 (525)
.. .|...+|. .+.+.+..+|...+...
T Consensus 344 ~~~~g~i~~~~-~~~~~~~~~~~~~~~~~ 371 (385)
T TIGR00710 344 RLVLGAIVGYL-VSLIHGNTAWPMSLSCL 371 (385)
T ss_pred HHHHHHHHHHH-HHhccccChHHHHHHHH
Confidence 65 45555555 44555555555544433
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.96 E-value=8.7e-09 Score=122.09 Aligned_cols=164 Identities=13% Similarity=0.026 Sum_probs=130.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChH-HHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHHH
Q 045562 41 SALFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTA-TAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVL 119 (525)
Q Consensus 41 ~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~-~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~~ 119 (525)
.++..++..++.....+.+..++|.|+.+.+|.+.. ..+++.+...++..++.++.|+++||+ ++++++.++.++.++
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~-~~~~~~~~~~~~~~~ 311 (1146)
T PRK08633 233 VLWLAIIGLSYFWFISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRH-IELGLVPLGALGLAL 311 (1146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-eEccchhHHHHHHHH
Confidence 444444444555556666778899999999999998 899999999999999999999999998 999988888887777
Q ss_pred HHHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhhHH
Q 045562 120 GLGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWYF 199 (525)
Q Consensus 120 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 199 (525)
+.+++.+..+ .+.+++..++.|++.++..+...+++.+.+|++. |++++++.+.
T Consensus 312 ~~~~~~~~~~--------------------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------rg~~~~~~~~ 365 (1146)
T PRK08633 312 SLFLLPTAPS--------------------LASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKE------LGKVLAANNF 365 (1146)
T ss_pred HHHHHHHhhh--------------------HHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccc------hhhhhHHHHH
Confidence 7766665533 5666777888999999988899999999999998 9999999999
Q ss_pred HHhhhhHHHhhhhhhccc-ccchhhhHHHHHHH
Q 045562 200 GMCMGTFVTLTVLNYIQD-NLNWILGFGIPCIL 231 (525)
Q Consensus 200 ~~~~g~~~gp~~~~~l~~-~~g~~~~f~~~~~~ 231 (525)
..++|..+++.+++.+.. .+++...|++.+.+
T Consensus 366 ~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 398 (1146)
T PRK08633 366 LQNVGMLLFLALTTLFSGLGLSPAGLFYLIALV 398 (1146)
T ss_pred HHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 999999888888776643 23455555554433
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.7e-08 Score=102.99 Aligned_cols=167 Identities=13% Similarity=-0.019 Sum_probs=114.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccch---HHHHHH-HHH
Q 045562 40 RSALFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGR---YRAIII-ASL 115 (525)
Q Consensus 40 ~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Gr---r~~~~~-~~~ 115 (525)
|..|.+....++....+|++..|+|.|+.+ .|++.. .+.......+... +..++++||. .| |+.... ..+
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~wlp~~L~~-~g~s~~-~~~~~~l~~~~g~---~g~~~~~d~~-~r~~~r~~~~~~~~~ 265 (368)
T TIGR00903 192 KDLWIIGAILGFGVALFDNLAIWLEAALRP-AGLEDI-AGDAVALAILAGL---IGVAVIPDRV-ARAGLRSIYIRAAAL 265 (368)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCChH-HHHHHHHHHHHHH---HHHHHhhHHh-hhhhhHHHHHHHHHH
Confidence 567888888899999999999999999964 678764 4444444444333 4457888886 54 333332 333
Q ss_pred HHHHHHHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehh
Q 045562 116 IYVLGLGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFN 195 (525)
Q Consensus 116 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 195 (525)
+.++...+.....+ ....++...+.+++.....+..+++.+|.+|++. |+++.|
T Consensus 266 ~~a~~~~~~~~~~~--------------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------rgt~~G 319 (368)
T TIGR00903 266 LIAAFFLALAFELN--------------------RLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKEL------HGKAAG 319 (368)
T ss_pred HHHHHHHHHHHccc--------------------cHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhh------cCcccc
Confidence 33333333332211 2233344455666677777778899999999999 999999
Q ss_pred hhHHHHhhhhHHHhhhhhhcccccchhhhHHHHHHHHHHHHHHHH
Q 045562 196 WWYFGMCMGTFVTLTVLNYIQDNLNWILGFGIPCILMVIALVVFL 240 (525)
Q Consensus 196 ~~~~~~~~g~~~gp~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~ 240 (525)
+.+...++|+..+|.+.+.+.. |....|.+.++..+++.+..+
T Consensus 320 ~~~~~g~~~~~~~~~~~~~~~~--~~~~~f~~~~~~~~i~~~~~~ 362 (368)
T TIGR00903 320 AIGFTSRAISVALALAAMLFIS--SAEAYFTFLAILITIAFAIAL 362 (368)
T ss_pred hhhHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999987763 666777776666666555544
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=9.6e-09 Score=121.72 Aligned_cols=185 Identities=10% Similarity=-0.071 Sum_probs=132.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHHH
Q 045562 40 RSALFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVL 119 (525)
Q Consensus 40 ~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~~ 119 (525)
|.++...+..++..+..+.+..++|.|+.+.+|.+....+++.+.+.++..++.++.|+++|+. ++++.+..+.++..+
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~-~~~~~~~~~~~~~~~ 303 (1140)
T PRK06814 225 KRIWLAILGISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGR-ITLLYVPIGALLMGL 303 (1140)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCc-eeeeeehHHHHHHHH
Confidence 4566666666677777778888999999999999999999999999999999999999999987 766666666555554
Q ss_pred HHHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhhHH
Q 045562 120 GLGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWYF 199 (525)
Q Consensus 120 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 199 (525)
+.+.+.+..............-.|.....+.+.+++..++.|++.+...+...+++.+.+|++. |+++++..+.
T Consensus 304 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~G~v~g~~~~ 377 (1140)
T PRK06814 304 FGLDLAFASSSVPAEPAQLKSILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAH------RARVIAANNV 377 (1140)
T ss_pred HHHHHHhcccccccccccccchhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCccc------ceeeeHHHHH
Confidence 4443333200000000000000000000114566777888999999999999999999999999 9999999999
Q ss_pred HHhhhhHHHhhhhhhccc-ccchhhhHHHHHHH
Q 045562 200 GMCMGTFVTLTVLNYIQD-NLNWILGFGIPCIL 231 (525)
Q Consensus 200 ~~~~g~~~gp~~~~~l~~-~~g~~~~f~~~~~~ 231 (525)
...+|..+++++.+.+.+ ..++...|++.+++
T Consensus 378 ~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~~ 410 (1140)
T PRK06814 378 LNAAFMVAGTIILALLQALGFSIPWIILFIALA 410 (1140)
T ss_pred HHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 999999999999998864 45666666554443
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=8.7e-09 Score=109.47 Aligned_cols=163 Identities=13% Similarity=0.146 Sum_probs=122.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHHH
Q 045562 40 RSALFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVL 119 (525)
Q Consensus 40 ~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~~ 119 (525)
|..+......++....++......+.|+++.+|.+....++......+...++.++.++++||+ |+|+++.++.++.++
T Consensus 228 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~-g~~~~~~~g~~~~~i 306 (448)
T PRK09848 228 RPLFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARI-GKKNTFLIGALLGTC 306 (448)
T ss_pred chHHHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHH
Confidence 3455555666666666666667778888888898776666555444566778899999999999 999999999988888
Q ss_pred HHHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCccccc-ccceehhhhH
Q 045562 120 GLGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESK-LKSSFFNWWY 198 (525)
Q Consensus 120 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~-~r~~~~~~~~ 198 (525)
+.+++.+... .+.+.+++..++.++|.+...+...++.+|..|.++.+..+ .++..++.++
T Consensus 307 ~~~~~~~~~~------------------~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~ 368 (448)
T PRK09848 307 GYLLFFWVSV------------------WSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFS 368 (448)
T ss_pred HHHHHHHcCc------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHH
Confidence 8776665321 12455666777889999999999999999999865421111 1478888999
Q ss_pred HHHhhhhHHHhhhhhhcccccch
Q 045562 199 FGMCMGTFVTLTVLNYIQDNLNW 221 (525)
Q Consensus 199 ~~~~~g~~~gp~~~~~l~~~~g~ 221 (525)
+...+|..+|+.+.+.+.+..||
T Consensus 369 ~~~klg~aig~~i~g~~l~~~G~ 391 (448)
T PRK09848 369 FTRKCGQAIGGSIPAFILGLSGY 391 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999887665555
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.7e-07 Score=93.98 Aligned_cols=153 Identities=18% Similarity=0.164 Sum_probs=108.1
Q ss_pred cccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhccCCCCccCCCCcCCCch
Q 045562 69 GPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVLGLGLLTLSAVLLSGSTSECQNTSCSANQF 148 (525)
Q Consensus 69 ~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (525)
++.|++..+++.+.........+..++.|.++||+ |||+.-+...+++.++.+.--..
T Consensus 62 ~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~-Grk~~cl~~cily~~scl~k~~~--------------------- 119 (354)
T PF05631_consen 62 ESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRY-GRKKACLLFCILYSLSCLTKHSS--------------------- 119 (354)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHhcc---------------------
Confidence 57899999999999999999999999999999999 99999999888888877543322
Q ss_pred hHHHHHHHHHHHHhccccCccchhhhh-hccccCCCcccccccceehhhhH-HHHhhhhHHHhhhhhhcccccch--hhh
Q 045562 149 QVIFFFFSLYLIALGQGGHKPCVQAFG-ADQFDSQHPLESKLKSSFFNWWY-FGMCMGTFVTLTVLNYIQDNLNW--ILG 224 (525)
Q Consensus 149 ~~~~~~~~~~l~g~g~g~~~~~~~~~~-~~~~~~~~~~~~~~r~~~~~~~~-~~~~~g~~~gp~~~~~l~~~~g~--~~~ 224 (525)
++..++++|++.|+++.....+-.+-. .|--..+-++ ...+.-++... ....+-++.+..++.++.++.+. ..+
T Consensus 120 ~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~--~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaP 197 (354)
T PF05631_consen 120 NYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQ--EWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAP 197 (354)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCh--HHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcch
Confidence 278999999999999998877665544 3322111111 11344444333 22334445555666677776655 789
Q ss_pred HHHHHHHHHHHHHHHHhcccc
Q 045562 225 FGIPCILMVIALVVFLLGTKI 245 (525)
Q Consensus 225 f~~~~~~~~~~~~~~~~~~~~ 245 (525)
|....++.+++.+......+|
T Consensus 198 F~~a~~~l~~~~~~I~~~W~E 218 (354)
T PF05631_consen 198 FDAAIVLLAVAAVLILKTWPE 218 (354)
T ss_pred HHHHHHHHHHHHHHHHhcccc
Confidence 988888777776666555544
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.8e-08 Score=99.90 Aligned_cols=174 Identities=11% Similarity=0.136 Sum_probs=114.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--CC-----------------ChHHHHHHHHHHHHHHHhhhhhHHHHh
Q 045562 40 RSALFIIGVEMAERFAYYGVSSNLITYLTGPL--AQ-----------------STATAAENVNAWSGVASLLPLFGAFLA 100 (525)
Q Consensus 40 ~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~l--g~-----------------s~~~~~~~~~~~~~~~~~~~~~~G~ls 100 (525)
|..+.+....|.+.++||+.+-......+... |. +...--.-.....+...-+.++.+++.
T Consensus 326 kttlllw~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt~~iv 405 (528)
T KOG0253|consen 326 KTTLLLWRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLITSLAEFPGLLITGVIV 405 (528)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHHHHHH
Confidence 45566777888899999988754433222111 11 111111222344566777889999999
Q ss_pred hhccchHHHHHHHHHHHHHHHHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhcccc
Q 045562 101 DSFLGRYRAIIIASLIYVLGLGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFD 180 (525)
Q Consensus 101 D~~~Grr~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~ 180 (525)
||+ |||+.+..+.+++.+..+++....+ .+.....++.+|+++.. .+.+.+.|..|.+|
T Consensus 406 erl-GRKkTMal~l~~f~iflfll~~c~~----------------rn~~tvllf~arafisg----~fqvaYvYtPEVyP 464 (528)
T KOG0253|consen 406 ERL-GRKKTMALSLILFGIFLFLLTTCKT----------------RNAYTVLLFTARAFISG----AFQVAYVYTPEVYP 464 (528)
T ss_pred HHh-cchhHHHHHHHHHHHHHHHHHHhcC----------------cchhHHHHHHHHHHHhc----hheEEEEecCcccc
Confidence 998 9999999998888777766665432 22223556667766543 34567899999999
Q ss_pred CCCcccccccceehhhhHHHHhhhhHHHhhhhhhcccccchhhhHHHHHHHHHHHHHHHHh
Q 045562 181 SQHPLESKLKSSFFNWWYFGMCMGTFVTLTVLNYIQDNLNWILGFGIPCILMVIALVVFLL 241 (525)
Q Consensus 181 ~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~ 241 (525)
+.. |+.+.|.-..+..+|+++.|.++ ...+..-.-..+...+++.+.++..+++
T Consensus 465 Tav------RatgvGtcSsmaRIggI~~p~iA-~~~e~s~sl~i~vy~~~~ilagIavcff 518 (528)
T KOG0253|consen 465 TAV------RATGVGTCSSMARIGGIFSPVIA-MRAELSTSLPIFVYGALFILAGIAVCFF 518 (528)
T ss_pred hhh------hhcchhhhhhHHhhhhhhhhHHH-HHhccceeehHHHHHHHHHHHHHHheee
Confidence 999 99999999999999999999998 3333222344444444444444444433
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.89 E-value=3.9e-08 Score=97.92 Aligned_cols=167 Identities=16% Similarity=0.101 Sum_probs=136.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHHHH
Q 045562 41 SALFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVLG 120 (525)
Q Consensus 41 ~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~~~ 120 (525)
..|.+....-+.++.+|.+..|+|.++. +.|+|..+.|...+...+.+....+.+-++++|...+|+........+.+|
T Consensus 209 ~aW~vtLfmGlqS~~~Y~~~~WLP~ili-~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G 287 (395)
T COG2807 209 LAWQVTLFMGLQSLLYYIVIGWLPAILI-DRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVG 287 (395)
T ss_pred hhHHHHHHHHhhHHHHHHHHHHHHHHHH-HcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 4577777777899999999999999997 779999999999999999999999999999998878999999888888888
Q ss_pred HHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhhHHH
Q 045562 121 LGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWYFG 200 (525)
Q Consensus 121 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 200 (525)
.+-+.+... ...+...+++|+|.|+.+|....++.+..++.+. -++..++.+-.
T Consensus 288 ~~G~~~~P~---------------------~~~~lw~~llG~G~G~~F~laL~li~~rs~~a~~-----Aa~LSgmaQg~ 341 (395)
T COG2807 288 LVGLLLAPG---------------------QLPILWALLLGLGQGGAFPLALTLILLRSSDAAI-----AAALSGMAQGV 341 (395)
T ss_pred HHHHHHhhh---------------------hHHHHHHHHHhCccchHHHHHHHHHHhhcCChHH-----HHHHHHHhhhh
Confidence 888776643 1122225789999999999999999998876541 56666677777
Q ss_pred HhhhhHHHhhhhhhcccccc-hhhhHHHHHHHHHH
Q 045562 201 MCMGTFVTLTVLNYIQDNLN-WILGFGIPCILMVI 234 (525)
Q Consensus 201 ~~~g~~~gp~~~~~l~~~~g-~~~~f~~~~~~~~~ 234 (525)
+.+=+.+||.+.|++.|.+| |+.+...-+...++
T Consensus 342 GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i~ 376 (395)
T COG2807 342 GYLLAAFGPWLFGFLHDATGSWSAPLVLLALATLL 376 (395)
T ss_pred hHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHHH
Confidence 77888889999999998776 88877655544333
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.7e-08 Score=103.63 Aligned_cols=145 Identities=12% Similarity=0.054 Sum_probs=110.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHH-HHHHhhhhhHHHHhhhccchHHHHHHHHHHHHH
Q 045562 41 SALFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWS-GVASLLPLFGAFLADSFLGRYRAIIIASLIYVL 119 (525)
Q Consensus 41 ~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~-~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~~ 119 (525)
..+.+++..++....++....+++.|+.+ +|++..+.+.+..... +...++.+++|+++||+ |||+.++.+.++..+
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~-g~~~~l~~~~~~~~~ 287 (356)
T TIGR00901 210 QALLLLLLIVLYKLGDSAATVLTTLFLLD-MGFSKEEIALVAKINGLLGAILGGLIGGIIMQPL-NILYALLLFGIVQAL 287 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHH
Confidence 36666666677788888888999999986 9999999998887766 56778999999999998 999999888887777
Q ss_pred HHHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhhHH
Q 045562 120 GLGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWYF 199 (525)
Q Consensus 120 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 199 (525)
+..++....+.....+ . +..+.+.++...++.+++.+...+...++..|.+|+++ |++.+++++.
T Consensus 288 ~~~~~~~~~~~~~~~~--~-------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~~ 352 (356)
T TIGR00901 288 TNAGFVWLASNGHHDG--I-------TFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKF------GATQMALLSS 352 (356)
T ss_pred HHHHHHHHHhcCcccc--c-------ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCc------cHHHHHHHHH
Confidence 6665544321000000 0 00124566777788899999999999999999999999 9999999877
Q ss_pred HHh
Q 045562 200 GMC 202 (525)
Q Consensus 200 ~~~ 202 (525)
..+
T Consensus 353 ~~~ 355 (356)
T TIGR00901 353 LSA 355 (356)
T ss_pred HHh
Confidence 654
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=6.6e-08 Score=100.95 Aligned_cols=163 Identities=14% Similarity=-0.047 Sum_probs=120.3
Q ss_pred HHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 045562 53 RFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVLGLGLLTLSAVLLS 132 (525)
Q Consensus 53 ~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~~~~~l~~~~~~~~~ 132 (525)
..........++.|+++.+|.++.+.|.+.....++..++.++.+++.||+ ++|+++..+.. ..+...++.+.++
T Consensus 218 ~~~~~~~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~-~~~~~~~~g~~-~~~~~~~~~~~~~--- 292 (393)
T PRK11195 218 WGAGATLRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLE-TVLRVLPAGIL-MGLVVLLMALQHS--- 292 (393)
T ss_pred HHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCC-cccchHHHHHH-HHHHHHHHHHHhH---
Confidence 344445556677888888999999999999999999999999999999998 98888877753 3333333333321
Q ss_pred CCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhhHHHHhhhhHHHhhhh
Q 045562 133 GSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWYFGMCMGTFVTLTVL 212 (525)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~ 212 (525)
.+...+..++.|++.+...++.++.+.+..|++. +++++.+..+...++|..++..+.
T Consensus 293 -----------------~~~~~~~~~~~G~~~g~~~~~~~~~~q~~~~~~~-----~~g~~~a~~~~~~~~~~~~~~~~~ 350 (393)
T PRK11195 293 -----------------LLPAYPLLILIGALGGFFVVPMNALLQHRGHVLV-----GAGHSIAVQNFNENLAMLLMLGLY 350 (393)
T ss_pred -----------------HHHHHHHHHHHHHhhhhhhhhHHHHHHhhCcccc-----cchhHHHHHhHHHHHHHHHHHHHH
Confidence 4555666778899998888888888877655432 168999999999999999999998
Q ss_pred hhcccccchhhhHHHHHHHHHHHHHHHHhcc
Q 045562 213 NYIQDNLNWILGFGIPCILMVIALVVFLLGT 243 (525)
Q Consensus 213 ~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~ 243 (525)
+.+ +..|-+..+.+.++..+++.......+
T Consensus 351 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (393)
T PRK11195 351 SLL-VKLGVPVVAVIVGFGLLVALAMALLWR 380 (393)
T ss_pred HHH-HHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 865 557877777776665555544444333
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=98.86 E-value=3.1e-08 Score=104.64 Aligned_cols=163 Identities=16% Similarity=0.127 Sum_probs=129.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHHH
Q 045562 40 RSALFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVL 119 (525)
Q Consensus 40 ~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~~ 119 (525)
|....++...++..+.........+.|.+..+|.+ ...+.+.....+...++.++.++++||+ |+|+++..+..+.++
T Consensus 225 r~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~-gk~~~~~~~~~~~~~ 302 (428)
T PF13347_consen 225 RPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRF-GKKKVYIIGLLLAAL 302 (428)
T ss_pred chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHc-cceeehhhhHHHHHH
Confidence 44555666666666777666777777777777777 4556667788888999999999999999 999999999999999
Q ss_pred HHHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCccc-ccccceehhhhH
Q 045562 120 GLGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLE-SKLKSSFFNWWY 198 (525)
Q Consensus 120 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~ 198 (525)
+.+++.+... .+.+.+++..++.|++.+...+...++++|..+.++.+. +.+.+..++.+.
T Consensus 303 ~~~~~~~~~~------------------~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~ 364 (428)
T PF13347_consen 303 GFLLLFFLGP------------------GSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNS 364 (428)
T ss_pred HHHHHHHHHh------------------hhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhh
Confidence 9888887752 126888888899999999999999999999998654321 112477888899
Q ss_pred HHHhhhhHHHhhhhhhcccccchh
Q 045562 199 FGMCMGTFVTLTVLNYIQDNLNWI 222 (525)
Q Consensus 199 ~~~~~g~~~gp~~~~~l~~~~g~~ 222 (525)
+...+|..+++.+.+.+.+..|+.
T Consensus 365 ~~~k~~~~la~~i~g~~l~~~Gy~ 388 (428)
T PF13347_consen 365 FFIKIGQGLAGAIVGLLLALVGYD 388 (428)
T ss_pred hhhHHHHHHHHHHHHHHHHHhCcC
Confidence 999999999999998876655544
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=98.85 E-value=5.1e-09 Score=106.46 Aligned_cols=143 Identities=22% Similarity=0.272 Sum_probs=116.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccCCC-hHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHHHHH
Q 045562 43 LFIIGVEMAERFAYYGVSSNLITYLTGPLAQS-TATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVLGL 121 (525)
Q Consensus 43 ~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s-~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~~~~ 121 (525)
|.++...+...+..+....++|.|+.+.+|.+ ..+.+...+...+...++.++.|+++||+ |+|+..........++.
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~ 287 (352)
T PF07690_consen 209 WILLIAFFLFFFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRF-GRRRRLLIAILLLILGA 287 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhHHHHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHHHHHHHH
Confidence 43444555555677778899999999999999 78999999999999999999999999998 98887777776666666
Q ss_pred HHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhhHHHH
Q 045562 122 GLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWYFGM 201 (525)
Q Consensus 122 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 201 (525)
+.+...... .+....+...++.|++.+...+...+++.|.+|+++ |+++.+..+...
T Consensus 288 ~~~~~~~~~-----------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~g~~~~~~ 344 (352)
T PF07690_consen 288 LGLLLLPFS-----------------SSPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEY------RGTAFGLFNSIG 344 (352)
T ss_dssp HHHCCSHHH-----------------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCH------HHHHHHHHHHHH
T ss_pred HHHHHHHHh-----------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH------HHHHHHHHHHHH
Confidence 555544331 113555567778899999999999999999999998 999999999999
Q ss_pred hhhhHHHh
Q 045562 202 CMGTFVTL 209 (525)
Q Consensus 202 ~~g~~~gp 209 (525)
++|..+||
T Consensus 345 ~~~~~igP 352 (352)
T PF07690_consen 345 SLGGIIGP 352 (352)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHCC
Confidence 99999987
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=98.85 E-value=2e-08 Score=108.30 Aligned_cols=132 Identities=15% Similarity=0.050 Sum_probs=97.3
Q ss_pred HHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhc
Q 045562 84 AWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVLGLGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALG 163 (525)
Q Consensus 84 ~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g 163 (525)
...+....+.++.++++||+ |||+.+.++.++..++.+++.+... ...+..++..++.+++
T Consensus 363 ~~~~~~i~~~~~~~~l~dr~-grr~~~~~~~~~~~~~~l~~~~~~~------------------~~~~~~~~~~~~~~~~ 423 (505)
T TIGR00898 363 ISGLVELPAKLITLLLIDRL-GRRYTMAASLLLAGVALLLLLFVPV------------------DLYFLRTALAVLGKFG 423 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHcCC------------------CchHHHHHHHHHHHHH
Confidence 44566777888999999998 9999999988887777766665432 0013333444555666
Q ss_pred cccCccchhhhhhccccCCCcccccccceehhhhHHHHhhhhHHHhhhhhhcccccchhhhHHHHHHHHHHHHHHHHhc
Q 045562 164 QGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWYFGMCMGTFVTLTVLNYIQDNLNWILGFGIPCILMVIALVVFLLG 242 (525)
Q Consensus 164 ~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~ 242 (525)
.+...+..+++.+|.+|++. |++++++.+....+|+.++|.+.+ +.+ .++..++.+.+++.+++.+..++.
T Consensus 424 ~~~~~~~~~~~~~e~~p~~~------r~~~~g~~~~~~~ig~~i~p~i~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~l 494 (505)
T TIGR00898 424 ITSAFQMVYLYTAELYPTVV------RNLGVGVCSTMARVGSIISPFLVY-LGE-KWLFLPLVLFGGLALLAGILTLFL 494 (505)
T ss_pred HHHHHHHHHHHhcccccHHH------HhhhHhHHHHHHHHHHHHHhHHHH-HHH-HHHhhHHHHHHHHHHHHHHHHHcC
Confidence 66666788899999999998 999999999999999999999998 443 566667776666655554444443
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.83 E-value=2.9e-08 Score=106.40 Aligned_cols=176 Identities=14% Similarity=0.116 Sum_probs=149.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccc--hHHHHHHHHHHH
Q 045562 40 RSALFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLG--RYRAIIIASLIY 117 (525)
Q Consensus 40 ~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~G--rr~~~~~~~~~~ 117 (525)
+..+.+.+...+..++++.-..+++.|.. +.|++..+.+.+.++..+...+++++.|+++|+. . ++.+..+++++.
T Consensus 298 ~~fl~~~~~~~~~~~g~~~p~~~l~~~~~-~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~-~~~~~~~~~~~ll~~ 375 (509)
T KOG2504|consen 298 PKFLLLALSNLFAYLGFNVPFVYLPSYAK-SLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKP-GIRALVLFLLTLLIA 375 (509)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCcc-ccchHHHHHHHHHHH
Confidence 45666777777888888888888999887 8999999999999999999999999999999998 6 444555666666
Q ss_pred HHHHHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhh
Q 045562 118 VLGLGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWW 197 (525)
Q Consensus 118 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 197 (525)
.++...+.+..+ ++.++..-++.|++.|.........+.|..+.++ -+.++|+.
T Consensus 376 gl~~~~~p~~~~--------------------~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~------l~~a~Gl~ 429 (509)
T KOG2504|consen 376 GLARLFLPFATT--------------------YVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEK------LSNAYGLL 429 (509)
T ss_pred HHHHHHHHHhcc--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhh------cchHHHHH
Confidence 666666666654 6778888888999999988888889999999998 99999999
Q ss_pred HHHHhhhhHHHhhhhhhcccccc-hhhhHHHHHHHHHHHHHHHHhcc
Q 045562 198 YFGMCMGTFVTLTVLNYIQDNLN-WILGFGIPCILMVIALVVFLLGT 243 (525)
Q Consensus 198 ~~~~~~g~~~gp~~~~~l~~~~g-~~~~f~~~~~~~~~~~~~~~~~~ 243 (525)
.....++..+||+++|++.|..| |...|+..++..+++...++..+
T Consensus 430 l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 430 LLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred HHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHHHHhH
Confidence 99999999999999999999888 99999999988887766555544
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.5e-07 Score=97.90 Aligned_cols=142 Identities=12% Similarity=0.026 Sum_probs=93.1
Q ss_pred HHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhccCCCC
Q 045562 57 YGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVLGLGLLTLSAVLLSGSTS 136 (525)
Q Consensus 57 y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 136 (525)
+.+..+.|.|+++++|++..+.+.......++..++.++.|++.||+ |||+.+..+..+..++.+++.+...
T Consensus 220 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~-g~~~~~~~~~~~~~~~~~~~~~~~~------- 291 (392)
T PRK10473 220 LTFVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIF-KPRTLMLTSQVLFLAAGITLALSPS------- 291 (392)
T ss_pred HHHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence 34455677788888999999999988889999999999999999998 9999999998888877777666533
Q ss_pred ccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhhHHHHhhhhHHHhhhhhhcc
Q 045562 137 ECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWYFGMCMGTFVTLTVLNYIQ 216 (525)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l~ 216 (525)
....+....+.+.|.+...+. ....+..|.++ |+ +..+....++..+|+.+++++.
T Consensus 292 -------------~~~~~~~~~l~~~g~~~~~~~--~~~~~~~~~~~------~~---g~~~~~~~~~~~~g~~~~~~l~ 347 (392)
T PRK10473 292 -------------HAVSLFGITLICAGFSVGFGV--AMSQALGPFSL------RA---GVASSTLGIAQVCGSSLWIWLA 347 (392)
T ss_pred -------------HHHHHHHHHHHHHHHHHHhHH--HHHHHhccCcc------cc---cHHHHHHHHHHHHHHHHHHHHH
Confidence 122222233333333322222 22233445443 33 3333444567677777777777
Q ss_pred cccchhhhHHHHHH
Q 045562 217 DNLNWILGFGIPCI 230 (525)
Q Consensus 217 ~~~g~~~~f~~~~~ 230 (525)
+..|+.....+.+.
T Consensus 348 ~~~g~~~~~~~~~~ 361 (392)
T PRK10473 348 AVLGISAWNMLIGI 361 (392)
T ss_pred HHhccchhHHHHHH
Confidence 77777654444443
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.80 E-value=3.4e-08 Score=104.64 Aligned_cols=178 Identities=15% Similarity=0.126 Sum_probs=125.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccc-------hHHHHH-
Q 045562 40 RSALFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLG-------RYRAII- 111 (525)
Q Consensus 40 ~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~G-------rr~~~~- 111 (525)
+.+|.+.+..+.++++++.+..++|.|+.+.+|++..+.|+..+...+...+..+++|.++||... +||.+-
T Consensus 258 ~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~ 337 (466)
T KOG2532|consen 258 PPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNT 337 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHh
Confidence 468999999999999999999999999999999999999999999999999999999999999833 223322
Q ss_pred HHHHHHHHHHHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccc
Q 045562 112 IASLIYVLGLGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKS 191 (525)
Q Consensus 112 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~ 191 (525)
++....++..+.+++... .....+...+.++..+.|+..++.. .-..|..|++ -+
T Consensus 338 i~~~~~ai~l~~l~~~~~--------------~~~~~a~~~l~~~~~~~g~~~~Gf~----~~~~~~apq~-------a~ 392 (466)
T KOG2532|consen 338 IAFGGPAVFLLVLAFTSD--------------EHRLLAVILLTIAIGLSGFNISGFY----KNHQDIAPQH-------AG 392 (466)
T ss_pred HHHHHHHHHHHeeeecCC--------------CcchHHHHHHHHHHHHcccchhhhH----hhhhhccchH-------HH
Confidence 233333344444443321 1111122233333333333333322 2222334443 59
Q ss_pred eehhhhHHHHhhhhHHHhhhhhhcccc---cchhhhHHHHHHHHHHHHHHHHhc
Q 045562 192 SFFNWWYFGMCMGTFVTLTVLNYIQDN---LNWILGFGIPCILMVIALVVFLLG 242 (525)
Q Consensus 192 ~~~~~~~~~~~~g~~~gp~~~~~l~~~---~g~~~~f~~~~~~~~~~~~~~~~~ 242 (525)
..+++.+...++.+.++|.+.+.+.++ ..|+.+|++.+++.+++-+++.+.
T Consensus 393 ~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~f 446 (466)
T KOG2532|consen 393 FVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNIIFLFF 446 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhchheeEe
Confidence 999999999999999999999998842 369999999998888876655544
|
|
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.80 E-value=3.9e-08 Score=103.50 Aligned_cols=188 Identities=18% Similarity=0.160 Sum_probs=128.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHHH
Q 045562 40 RSALFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVL 119 (525)
Q Consensus 40 ~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~~ 119 (525)
+..++.+...+...+.-..........+-++-|++..++.++.........+..+++.++.||+ |||+.++.+..++.+
T Consensus 269 ~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~-gRRpLll~~~~~~~~ 347 (485)
T KOG0569|consen 269 RPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRL-GRRPLLLISLSLMAV 347 (485)
T ss_pred HHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcHHHHHHHHHHHH
Confidence 3455555566665555544445555566667899999999999999999999999999999999 999999999998888
Q ss_pred HHHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHH--HHhccccCccchhhhhhccccCCCcccccccceehhhh
Q 045562 120 GLGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYL--IALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWW 197 (525)
Q Consensus 120 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 197 (525)
..+++.......... +++..+..+++.++ ..++.| ..|..+-+.+|.+|++. |..++++-
T Consensus 348 ~~~~~~~~~~l~~~~-----------~~~~~y~~i~~~~~~~~~f~~G-~gpi~~fi~aELf~~~~------R~aa~s~~ 409 (485)
T KOG0569|consen 348 ALLLMSIALFLSNSF-----------GSWLSYLCIAAIFLFIISFAIG-PGPIPWFIGAELFPQSA------RSAAQSVA 409 (485)
T ss_pred HHHHHHHHHHHHHHh-----------hhHHHHHHHHHHHHHHHhhhcC-CCchhHHHHHHhCCccc------hHHHHHHH
Confidence 877776553321110 00111222233333 333333 35788899999999999 99999998
Q ss_pred HHHHhhhhHHHhhhhhhcccccchhhhHHHHHHHHHHHHHHHHhccccee
Q 045562 198 YFGMCMGTFVTLTVLNYIQDNLNWILGFGIPCILMVIALVVFLLGTKIYR 247 (525)
Q Consensus 198 ~~~~~~g~~~gp~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~ 247 (525)
+....+...+-...--.+.+.+|- +.|.+.++...+..+..+...||++
T Consensus 410 ~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~~~lPETk 458 (485)
T KOG0569|consen 410 TAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYLYRYLPETK 458 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHhCcccC
Confidence 887777777666666667777775 5555555555555555555555443
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=3.3e-07 Score=94.61 Aligned_cols=150 Identities=9% Similarity=-0.102 Sum_probs=99.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHHHH
Q 045562 41 SALFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVLG 120 (525)
Q Consensus 41 ~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~~~ 120 (525)
..+...+..++.....+.+..+.|.|+.+.+|.++.+.+.......++..++.++.|++.||+ |||+.+..+..+..+.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~ 273 (377)
T PRK11102 195 RVLGYMLASGFSFAGMFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRV-GALNMLRFGLWIQFIM 273 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHH
Confidence 344444445555566666677778888888999999999999999999999999999999998 9999999887664443
Q ss_pred HHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhhHHH
Q 045562 121 LGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWYFG 200 (525)
Q Consensus 121 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 200 (525)
.+.+......+ .+.+...+...+.+.+.+...+.....+.|..| ++ ++++.+..+..
T Consensus 274 ~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~g~~~~~~~~~ 330 (377)
T PRK11102 274 GIWLVVSALLD----------------LGFWALVVGVAAFVGCVSMISSNAMAVILDEFP-HM------AGTASSLAGTL 330 (377)
T ss_pred HHHHHHHHHHh----------------hhHHHHHHHHHHHHHHHHHhhHHHHHHHhcccc-cc------chHHHHHHHHH
Confidence 33322221100 113333444444444455555556666777766 45 78888875543
Q ss_pred -HhhhhHHHhhhhhh
Q 045562 201 -MCMGTFVTLTVLNY 214 (525)
Q Consensus 201 -~~~g~~~gp~~~~~ 214 (525)
..+|..+++.+++.
T Consensus 331 ~~~~g~~~g~~~~~~ 345 (377)
T PRK11102 331 RFGIGAIVGALLSLA 345 (377)
T ss_pred HHHHHHHHHHHHHhc
Confidence 35777777766543
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=4.4e-07 Score=94.72 Aligned_cols=153 Identities=10% Similarity=0.001 Sum_probs=108.9
Q ss_pred HHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhh
Q 045562 49 EMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVLGLGLLTLSA 128 (525)
Q Consensus 49 ~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~~~~~l~~~~~ 128 (525)
.......++....+.|.|++ +.|++..+.++.......+..++.++.+++.||+ |+|+.+.......+++.+.+....
T Consensus 212 ~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~-~~~~~~~~~~~~~~~~~~~~~~~~ 289 (401)
T PRK11043 212 FAACSAAFFAWLTGSPFILE-QMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKW-GGEQLLPWLLVLFAVSVIAIWLAS 289 (401)
T ss_pred HHHHHHHHHHHHHHhHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555666677888876 5799999999888777888888999999999998 999887666555555444333221
Q ss_pred hhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhhHHHHhhhhHHH
Q 045562 129 VLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWYFGMCMGTFVT 208 (525)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g 208 (525)
.... .....+++...+.+++.+...|...+...|..|+ + ++++.++++.....++..+
T Consensus 290 ~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~------~g~~~g~~~~~~~~~~~~~ 347 (401)
T PRK11043 290 LLSH---------------PSLVPLLIPFCVMAAANGAIYPIVVAQALRPFPQ-A------TGKAAALQNTLQLGLCFLA 347 (401)
T ss_pred Hhcc---------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCcc-c------ChHHHHHHHHHHHHHHHHH
Confidence 1000 1134445556677888888888888887777763 5 8999999998888888889
Q ss_pred hhhhhhcccccchhhhH
Q 045562 209 LTVLNYIQDNLNWILGF 225 (525)
Q Consensus 209 p~~~~~l~~~~g~~~~f 225 (525)
+.+.+.+.+.......+
T Consensus 348 ~~~~g~l~~~~~~~~~~ 364 (401)
T PRK11043 348 SLLVSALISTPLLTTGS 364 (401)
T ss_pred HHHHHHccCCChhHHHH
Confidence 99999887754444433
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=98.75 E-value=6.7e-08 Score=99.80 Aligned_cols=179 Identities=12% Similarity=0.151 Sum_probs=141.6
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhccccC---CChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHH
Q 045562 39 WRSALFIIGVEMAERFAYYGVSSNLITYLTGPLA---QSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASL 115 (525)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg---~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~ 115 (525)
-|+.|.+..........++.+-.-++.|.+..+. .+....|.+.+.-.+.-++...+..++.+|+ |.|+.++++..
T Consensus 219 ~~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~ri-g~k~~Lllag~ 297 (412)
T PF01306_consen 219 MRNFWFFVLFVIGVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRI-GAKNLLLLAGV 297 (412)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhc-ChHhHHHHHHH
Confidence 3567776666666666677666668888875443 3445567788888888899999999999998 99999999999
Q ss_pred HHHHHHHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehh
Q 045562 116 IYVLGLGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFN 195 (525)
Q Consensus 116 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 195 (525)
++.+=.+.++++++ .+.+.+.+.+.++-.+..-.+..-++++.+|++. ..+.+.
T Consensus 298 i~~iRi~~~~~~~~--------------------~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rl------sAt~y~ 351 (412)
T PF01306_consen 298 IMAIRIIGSGFATN--------------------PWVISLIKLLHALEFPLLLVAAFKYITAHFDKRL------SATLYL 351 (412)
T ss_dssp HHHHHHHHHHT--S--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGG------HHHHHH
T ss_pred HHHHHHHHHhhhcc--------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhH------HHHHHH
Confidence 98888888888765 6888999999999999988999999999999887 778888
Q ss_pred h-hHHHHhhhhHHHhhhhhhcccccchhhhHHHHHHHHHHHHHHHHhccc
Q 045562 196 W-WYFGMCMGTFVTLTVLNYIQDNLNWILGFGIPCILMVIALVVFLLGTK 244 (525)
Q Consensus 196 ~-~~~~~~~g~~~gp~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~ 244 (525)
+ ++.+..+|..+.+.++|++.|+.|++..|++.+.+.+...++.....+
T Consensus 352 v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~ 401 (412)
T PF01306_consen 352 VGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLK 401 (412)
T ss_dssp HHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeec
Confidence 8 567889999999999999999999999998877766665555554444
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.4e-07 Score=96.65 Aligned_cols=181 Identities=12% Similarity=0.058 Sum_probs=131.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHHHH
Q 045562 41 SALFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVLG 120 (525)
Q Consensus 41 ~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~~~ 120 (525)
+.++.++..+......-....+.+.|+++.-|.+....+.+.+...+.-.+.-...+++-.|+ |.|+++.++.+.+++=
T Consensus 208 ~~~~Fll~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~-g~~~ll~~a~~~~~vR 286 (400)
T PF03825_consen 208 RFLVFLLAAFLIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRF-GIKWLLLLALVAYAVR 286 (400)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHH
Confidence 344444455555555555567888998854447777777777777777888888999999998 9999999999988887
Q ss_pred HHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhhHHH
Q 045562 121 LGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWYFG 200 (525)
Q Consensus 121 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 200 (525)
..+++...++. +......+....++|+..+....+...++.+.+|++. |.++.++++..
T Consensus 287 ~~l~a~~~~~~---------------~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~------~at~Q~l~~~~ 345 (400)
T PF03825_consen 287 WLLYAYFSDPW---------------PFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPEL------RATAQGLYSAL 345 (400)
T ss_pred HHHHHHhcCCc---------------HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccc------hHHHHHHHHHH
Confidence 77777652210 0112233444567999999999999999999999999 99999998775
Q ss_pred -HhhhhHHHhhhhhhcccccchhh------hHHHHHHHHHHHHHHHHhcc
Q 045562 201 -MCMGTFVTLTVLNYIQDNLNWIL------GFGIPCILMVIALVVFLLGT 243 (525)
Q Consensus 201 -~~~g~~~gp~~~~~l~~~~g~~~------~f~~~~~~~~~~~~~~~~~~ 243 (525)
..+|..+|..++|++.|++|-+. .+.+.++..++..+.++...
T Consensus 346 ~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~f 395 (400)
T PF03825_consen 346 SFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVILF 395 (400)
T ss_pred HhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhhc
Confidence 47999999999999999877443 44555544444444444433
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=6.5e-08 Score=103.57 Aligned_cols=165 Identities=14% Similarity=0.082 Sum_probs=115.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHHH
Q 045562 40 RSALFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVL 119 (525)
Q Consensus 40 ~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~~ 119 (525)
|..+.++...++.....+......+.|.+..++ +....+.+.....+...++.++.++++||+ |||+++.++..+.++
T Consensus 231 ~~~~~ll~~~~~~~~~~~~~~~~~~y~~~y~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-gkk~~~~~~~~~~~~ 308 (473)
T PRK10429 231 DQLSCLLGMALAYNIASNIINGFAIYYFTYVIG-DADLFPYYLSYAGAANLVTLILFPRLVKSL-SRRILWAGASIFPVL 308 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhheeeEEEEECC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHHHHHH
Confidence 556666666777777776666666545443443 555666666666688889999999999999 999999988877666
Q ss_pred HHHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccc-cccceehhhhH
Q 045562 120 GLGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLES-KLKSSFFNWWY 198 (525)
Q Consensus 120 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~-~~r~~~~~~~~ 198 (525)
+.+.+......+ +.+.+.+++..++.+++.+...+..+++++|..|.++-+.. ...+..++...
T Consensus 309 ~~~~~~~~~~~~---------------~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~ 373 (473)
T PRK10429 309 SCGVLLLMGLAA---------------PHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQT 373 (473)
T ss_pred HHHHHHHHhccC---------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHH
Confidence 655544321100 01245566666778899999889999999999885431110 01345778888
Q ss_pred HHHhhhhHHHhhhhhhcccccch
Q 045562 199 FGMCMGTFVTLTVLNYIQDNLNW 221 (525)
Q Consensus 199 ~~~~~g~~~gp~~~~~l~~~~g~ 221 (525)
+...+|..+++.+.|++.+..||
T Consensus 374 ~~~K~~~al~~~i~g~~l~~~Gy 396 (473)
T PRK10429 374 MVVKGGSAFAAFFIGVVLGLIGY 396 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCC
Confidence 88999999999999988776666
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=98.71 E-value=6.4e-08 Score=99.35 Aligned_cols=141 Identities=16% Similarity=0.147 Sum_probs=102.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHHHH
Q 045562 41 SALFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVLG 120 (525)
Q Consensus 41 ~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~~~ 120 (525)
..+.+....+......+.+..+++.|+++.+|.+..+.+.......+...++.+++|+++||+ |||+.+..+......+
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-g~~~~~~~~~~~~~~~ 304 (366)
T TIGR00886 226 HTWILALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRL-GGARKLLMSFLGVAMG 304 (366)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhh-ccchhHHHHHHHHHHH
Confidence 345555555555666777888999999999999999999888889999999999999999998 9988887777666665
Q ss_pred HHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhhHHH
Q 045562 121 LGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWYFG 200 (525)
Q Consensus 121 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 200 (525)
..++.+....+ .+....++...+.+++.|...+...+++++.+| ++ +++++|+.+..
T Consensus 305 ~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~------~g~~~g~~~~~ 361 (366)
T TIGR00886 305 AFLVVLGLVSP----------------LSLAVFIVLFVALFFFSGAGNGSTFALVPHIFR-RA------TGAVSGLVGAI 361 (366)
T ss_pred HHHHHhcCCCc----------------chHHHHHHHHHHHHHHhccccchhhhcchhhch-hh------cccHHHHHHHh
Confidence 55554432100 013444444455555566666677788888887 35 89999998887
Q ss_pred Hhhhh
Q 045562 201 MCMGT 205 (525)
Q Consensus 201 ~~~g~ 205 (525)
.++|+
T Consensus 362 ~~~g~ 366 (366)
T TIGR00886 362 GNLGG 366 (366)
T ss_pred ccCCC
Confidence 77663
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=4e-07 Score=96.59 Aligned_cols=161 Identities=15% Similarity=0.097 Sum_probs=105.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHHHHH
Q 045562 42 ALFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVLGL 121 (525)
Q Consensus 42 ~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~~~~ 121 (525)
.+.++...++.......... +..|..++.--+....+.+.....+...++.+++++++||+ |||+.+..+.++.+++.
T Consensus 231 ~~~l~~~~~~~~~~~~~~~~-~~~y~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~-gk~~~~~~~~~~~~~~~ 308 (444)
T PRK09669 231 WRIMFIFNVVLLTAVVTRGG-ATLYYVNYVLLRPDLATLFLVTGMIAGLFGALLSERLLGKF-DRVRAFKWTIVAFVILS 308 (444)
T ss_pred HHHHHHHHHHHHHHHHHHhh-hhheeeeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHH
Confidence 34444444443333333333 44444433322333344455556677778889999999998 99999998876655443
Q ss_pred HHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCccccc-ccceehhhhHHH
Q 045562 122 GLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESK-LKSSFFNWWYFG 200 (525)
Q Consensus 122 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~-~r~~~~~~~~~~ 200 (525)
....+... .+.+.+++..++.|++.+...+..+++++|..|.++.+..+ ..+..++.+++.
T Consensus 309 ~~~~~~~~------------------~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~ 370 (444)
T PRK09669 309 ALIFFIPP------------------SNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFA 370 (444)
T ss_pred HHHHHhCc------------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHH
Confidence 33332211 12456677778899999999999999999999854422111 135567888889
Q ss_pred HhhhhHHHhhhhhhcccccchh
Q 045562 201 MCMGTFVTLTVLNYIQDNLNWI 222 (525)
Q Consensus 201 ~~~g~~~gp~~~~~l~~~~g~~ 222 (525)
..+|..+|+.++|++.+..||.
T Consensus 371 ~klg~alg~~i~g~ll~~~Gy~ 392 (444)
T PRK09669 371 IKLGLAIGGAVVGWILAWVDYV 392 (444)
T ss_pred HHHHHHHHHHHHHHHHHHcCCC
Confidence 9999999999999988777773
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=98.68 E-value=3.2e-07 Score=96.38 Aligned_cols=163 Identities=10% Similarity=-0.010 Sum_probs=115.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccc-CCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHHHH
Q 045562 42 ALFIIGVEMAERFAYYGVSSNLITYLTGPL-AQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVLG 120 (525)
Q Consensus 42 ~~~~~~~~~~~~~~~y~~~~~l~~yl~~~l-g~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~~~ 120 (525)
.+......++......++.++++.|+.+.. +.+....+...+.+.....++++++|+++||+ ++|+++.++.++.++.
T Consensus 234 ~~~~~l~~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~-~~~~~l~i~~~~~~~~ 312 (410)
T TIGR00885 234 YREGVIAQFFYVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYL-AAHKVLMAYAIIGMAL 312 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHHHHH
Confidence 343444455555555567788999987532 44545555556666778889999999999998 9999988888877777
Q ss_pred HHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhhHHH
Q 045562 121 LGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWYFG 200 (525)
Q Consensus 121 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 200 (525)
.++...... .. ......+.|++.+..+|+..+...+..+++. +.....+ . +
T Consensus 313 ~ll~~~~~~--------------------~~-~~~~l~~~glf~s~~fp~i~sl~~~~~g~~~------~~~s~~l-~-~ 363 (410)
T TIGR00885 313 CLGSIFAGG--------------------HV-GLYCLTLCSAFMSLMFPTIYGIALKGLGQDT------KYGAAGL-V-M 363 (410)
T ss_pred HHHHHHcCC--------------------hH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh------hhhHHHH-H-H
Confidence 666665432 12 2455667788888888999999999998665 3323332 2 2
Q ss_pred HhhhhHHHhhhhhhccccc------chhhhHHHHHHHHHH
Q 045562 201 MCMGTFVTLTVLNYIQDNL------NWILGFGIPCILMVI 234 (525)
Q Consensus 201 ~~~g~~~gp~~~~~l~~~~------g~~~~f~~~~~~~~~ 234 (525)
..+|+.+.|.+.|++.|.. +.+..|+++.++.+.
T Consensus 364 ~~~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~~~~~~~~ 403 (410)
T TIGR00885 364 AIIGGGIVPPLQGFIIDMKEIAAAPAVNTSFILPLLCFAV 403 (410)
T ss_pred HHhccchHHHHHHHHHHHhcccccCccchHHHHHHHHHHH
Confidence 3499999999999999953 478888877655443
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=98.62 E-value=3.2e-05 Score=79.79 Aligned_cols=156 Identities=17% Similarity=0.209 Sum_probs=116.7
Q ss_pred HHHHHHhccc-cCCChHHHH-HHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhccCCCCcc
Q 045562 61 SNLITYLTGP-LAQSTATAA-ENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVLGLGLLTLSAVLLSGSTSEC 138 (525)
Q Consensus 61 ~~l~~yl~~~-lg~s~~~~~-~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 138 (525)
|++..|+.+. .|++..+.. -+.-...-......++...++|.. |.|++++++.+..++...++.+..+
T Consensus 24 Pfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l-~Ykpviil~~~~~i~t~~lll~~~s--------- 93 (412)
T PF01770_consen 24 PFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYL-RYKPVIILQALSYIITWLLLLFGTS--------- 93 (412)
T ss_pred ccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHHHCc---------
Confidence 6788899987 899998874 444455556667778889999998 9999999999888887777766654
Q ss_pred CCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhhHHHHhhhhHHHhhhhhhccc-
Q 045562 139 QNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWYFGMCMGTFVTLTVLNYIQD- 217 (525)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l~~- 217 (525)
...+-+..+.-|++.+.. .+..+++=...|+++ -.++.+....+.-+|-.++..++-.+..
T Consensus 94 -----------v~~mq~~q~~yg~~~a~e-vay~sYiys~v~~~~------yq~vts~~raa~l~g~~~s~~lgQllvs~ 155 (412)
T PF01770_consen 94 -----------VLAMQLMQFFYGLATAAE-VAYYSYIYSVVDKEH------YQKVTSYTRAATLVGRFISSLLGQLLVSF 155 (412)
T ss_pred -----------HHHHHHHHHHHHHHHHHH-HHHHHHheeecCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 677888888888887764 456777777788777 7788888777777777777776665543
Q ss_pred -ccchhhhHHHHHHHHHHHHHHHHhccc
Q 045562 218 -NLNWILGFGIPCILMVIALVVFLLGTK 244 (525)
Q Consensus 218 -~~g~~~~f~~~~~~~~~~~~~~~~~~~ 244 (525)
..++.....+......++++..++.++
T Consensus 156 ~~~sy~~L~~isl~~~~~a~~~~~fLP~ 183 (412)
T PF01770_consen 156 GGVSYFQLNYISLASVSLALLIALFLPM 183 (412)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 445777777777766666666555443
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.3e-06 Score=88.35 Aligned_cols=156 Identities=17% Similarity=0.098 Sum_probs=118.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHHHH
Q 045562 41 SALFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVLG 120 (525)
Q Consensus 41 ~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~~~ 120 (525)
..+.-.+..|+.--.=-.+.++++.|+.+..|.+..++....+.+..+..++++++-++..|+ -..|.+.+..+..++-
T Consensus 237 ~~~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~-~~~k~Laf~a~~~ill 315 (422)
T COG0738 237 HLRLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRI-KPEKYLAFYALIAILL 315 (422)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHH
Confidence 344444444444444445668999999988999999999999999999999999999999998 8888887776655555
Q ss_pred HHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhhHHH
Q 045562 121 LGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWYFG 200 (525)
Q Consensus 121 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 200 (525)
++...+.++ ..-+.+.++.|+..+..+|+..+...+..|++. +.-|-.-++
T Consensus 316 ~~~~~l~~g---------------------~v~~~~l~~ig~F~simfPTIfslal~~l~~~t--------s~~s~~l~m 366 (422)
T COG0738 316 LLAVALIGG---------------------VVALYALFLIGLFNSIMFPTIFSLALKNLGEHT--------SVGSGLLVM 366 (422)
T ss_pred HHHHHHhcC---------------------hHHHHHHHHHHHHhHHHHHHHHHHHHhccCccc--------cccceeeee
Confidence 555555533 334456678899999999999999999999332 222333345
Q ss_pred HhhhhHHHhhhhhhcccccchhhhHH
Q 045562 201 MCMGTFVTLTVLNYIQDNLNWILGFG 226 (525)
Q Consensus 201 ~~~g~~~gp~~~~~l~~~~g~~~~f~ 226 (525)
..+|+.+-|.+.|++.|+.|-...+.
T Consensus 367 aivGGAiiP~l~G~i~d~~g~~~~~~ 392 (422)
T COG0738 367 AIVGGAIIPPLQGVIADMFGIQLTFL 392 (422)
T ss_pred heecchHHHHHHHHHHHhhhhHHHHH
Confidence 67899999999999999999887766
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.53 E-value=7.4e-07 Score=93.17 Aligned_cols=161 Identities=17% Similarity=0.173 Sum_probs=121.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHHHHH
Q 045562 42 ALFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVLGL 121 (525)
Q Consensus 42 ~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~~~~ 121 (525)
....+...++...+.-...+....|.+..+|.+................++.++...+++|+ |||+++.++.++.+++.
T Consensus 238 ~~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~-gkk~~~~~~~~~~~i~~ 316 (467)
T COG2211 238 LLLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKF-GKKKLFLIGLLLLAVGY 316 (467)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-chHHHHHHHHHHHHHHH
Confidence 33344445555555544456666777777888888888888888888888899999999998 99999999999999999
Q ss_pred HHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCccccccc-ceehhhhHHH
Q 045562 122 GLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLK-SSFFNWWYFG 200 (525)
Q Consensus 122 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r-~~~~~~~~~~ 200 (525)
+++.+... .+.+..++..++.++|.+...+..+++++|..+..|.+..++| |-.++.+.+.
T Consensus 317 ~~~~f~~~------------------~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~ 378 (467)
T COG2211 317 LLLYFTPA------------------GSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFF 378 (467)
T ss_pred HHHHhhcC------------------cchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHH
Confidence 88888752 2368888888999999999999999999999986654332223 4555667777
Q ss_pred HhhhhHHHhhhhhhcccccch
Q 045562 201 MCMGTFVTLTVLNYIQDNLNW 221 (525)
Q Consensus 201 ~~~g~~~gp~~~~~l~~~~g~ 221 (525)
.=+|..++..+.|++....||
T Consensus 379 ~K~g~ala~~~~g~~L~~~Gy 399 (467)
T COG2211 379 RKLGLALAGFIPGWILGAIGY 399 (467)
T ss_pred HHHHHHHHHHHHHHHHHHcCC
Confidence 778888887777776555543
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=5.1e-06 Score=86.46 Aligned_cols=142 Identities=12% Similarity=-0.009 Sum_probs=99.7
Q ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhccCCCCc
Q 045562 58 GVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVLGLGLLTLSAVLLSGSTSE 137 (525)
Q Consensus 58 ~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 137 (525)
......+.|+.+.+|.+..+.++.......+..++.++.+++.||+ +|+... ......++.+....... ...
T Consensus 225 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~-~~~~~~--~~~~~~~~~~~~~~~~~-~~~---- 296 (394)
T PRK11652 225 VFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-STLMWQ--SVICCLLAGLLMWIPGW-FGV---- 296 (394)
T ss_pred HHHHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH--HHHHHHHHHHHHHHHHH-hcc----
Confidence 3345667788888999999999888888888888888889999988 743333 22222222222221110 000
Q ss_pred cCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhhHHHHhhhhHHHhhhhhhccc
Q 045562 138 CQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWYFGMCMGTFVTLTVLNYIQD 217 (525)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l~~ 217 (525)
.+.+.++...++.+++.+...|...+...|.+|+ + ++++.+..+...++|+.+++.+++++.+
T Consensus 297 ----------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~------~g~~~~~~~~~~~lg~~~~~~~~~~~~~ 359 (394)
T PRK11652 297 ----------MNVWTLLVPAALFFFGAGMLFPLATSGAMEPFPY-L------AGTAGALLGGLQNIGSGLAALLSAMLPQ 359 (394)
T ss_pred ----------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-c------chHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 1135566677888999999899999999998874 4 7888999998889999999999998876
Q ss_pred ccchhhh
Q 045562 218 NLNWILG 224 (525)
Q Consensus 218 ~~g~~~~ 224 (525)
...+...
T Consensus 360 ~~~~~~~ 366 (394)
T PRK11652 360 TGQFSLG 366 (394)
T ss_pred CchHHHH
Confidence 5444443
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.1e-05 Score=78.17 Aligned_cols=168 Identities=14% Similarity=0.111 Sum_probs=114.0
Q ss_pred HHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 045562 53 RFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVLGLGLLTLSAVLLS 132 (525)
Q Consensus 53 ~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~~~~~l~~~~~~~~~ 132 (525)
.-..|.+. .....+.+.+|+|.++...+..+-.++..+ .++.|.+.|++ |.+.++.+|.+...+|..++.+......
T Consensus 15 ~Gt~Y~Fs-~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~-gp~~~l~iG~~~~~~GY~~~~l~~~~~i 91 (250)
T PF06813_consen 15 SGTTYTFS-AYSPQLKSRLGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRF-GPWVVLLIGAVLGFVGYGLLWLAVSGRI 91 (250)
T ss_pred cCcccchh-hhhHHHHHHhCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhc-chHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 33455554 444567889999999999998888888876 48889999999 9999999999999999999888755221
Q ss_pred CCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhhHHHHhhhhHHHhhhh
Q 045562 133 GSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWYFGMCMGTFVTLTVL 212 (525)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~ 212 (525)
.. ...+.+.+..++.+.+.+...........+.||+ + ||++.++.-....+++.+=..+.
T Consensus 92 ~~-------------~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~-~------RG~vvgilk~~~GLSaai~t~i~ 151 (250)
T PF06813_consen 92 PS-------------LPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR-S------RGTVVGILKGFFGLSAAIFTQIY 151 (250)
T ss_pred Cc-------------cchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc-c------cCceehhhhHHHHhHHHHHHHHH
Confidence 11 2356777777777777666655555666789985 5 89999997777666666544444
Q ss_pred hhcccccchhhhHHHHHHHHHHHHHHHHhcc
Q 045562 213 NYIQDNLNWILGFGIPCILMVIALVVFLLGT 243 (525)
Q Consensus 213 ~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~ 243 (525)
..+.+.-.-...+.+.....+++++.....+
T Consensus 152 ~~~f~~~~~~fll~la~~~~~v~l~~~~~vr 182 (250)
T PF06813_consen 152 SAFFGDDPSSFLLFLAVLPAVVCLVAMFFVR 182 (250)
T ss_pred HHHcCCChHHHHHHHHHHHHHHHHHHhhhee
Confidence 4333332233333334444444444444433
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.47 E-value=8.7e-05 Score=77.80 Aligned_cols=105 Identities=10% Similarity=0.059 Sum_probs=87.2
Q ss_pred HHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHH
Q 045562 82 VNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVLGLGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIA 161 (525)
Q Consensus 82 ~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g 161 (525)
..+......+..++++.+.|+. |.|..+.++...+..-...+...+ -+.++++-.++|
T Consensus 56 ~aiiY~~ftv~~l~~psiv~~i-~~K~~lv~ga~~y~~f~~gfl~~N---------------------~y~~yfssallG 113 (461)
T KOG3098|consen 56 QAIIYAFFTVSCLFAPSIVNFL-GPKWALVIGATCYAAFPLGFLFPN---------------------SYYLYFSSALLG 113 (461)
T ss_pred HHHHHHHHHHHHHhhHHHHHHh-hHHHHHHHHhHHHHHHHHHHHhcc---------------------hHHHHHHHHHhh
Confidence 5566777788899999999998 999999999988877666666554 377899999999
Q ss_pred hccccCccchhhhhhccccCCCcccccccceehhhhHHHHhhhhHHHhhhhhh
Q 045562 162 LGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWYFGMCMGTFVTLTVLNY 214 (525)
Q Consensus 162 ~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~ 214 (525)
+|.+..+...-.+.++..+++. +.+..++.....+.+-++|..+...
T Consensus 114 ~Gaallw~GqG~ylt~~st~~t------ie~Nisi~Wai~~~~li~Ggi~l~~ 160 (461)
T KOG3098|consen 114 FGAALLWTGQGGYLTSNSTRET------IERNISIFWAIGQSSLIIGGIILFI 160 (461)
T ss_pred hhHHheecccceehhhcCChhh------HHHHHHHHHHHHHHHHHhhhHhhee
Confidence 9999999999999999999888 8888888777777777777655543
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.41 E-value=4e-07 Score=91.60 Aligned_cols=183 Identities=13% Similarity=0.042 Sum_probs=134.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHH--HHHHHHHH
Q 045562 41 SALFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAI--IIASLIYV 118 (525)
Q Consensus 41 ~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~--~~~~~~~~ 118 (525)
-+++..+..-..+...-..-+.++++..+.+..+..+.|....-..+.+.++..+.|.++||+ +.-+.+ ..+++...
T Consensus 271 ~I~~~agai~~~n~~lafLePtlslwm~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~-~~~~wl~~~~gl~~~G 349 (464)
T KOG3764|consen 271 YILLIAGAITFSNSSLAFLEPTLSLWMLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKY-PHLRWLLSLGGLATVG 349 (464)
T ss_pred hHhhhhcchhhccchHHHhCcccHHHHHHhccCCCcceeeeecccccchhccCchHHHHHHhc-CchhHHHHHHHHHHHH
Confidence 455566655566666667889999999999997777999988888999999999999999999 833333 33333333
Q ss_pred HHHHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhhH
Q 045562 119 LGLGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWY 198 (525)
Q Consensus 119 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 198 (525)
+......++++ +..+++-++..+++.+..............+.++..+=.--+..+++..
T Consensus 350 ~~~~~iP~~~~--------------------~~~L~vp~~~l~~~i~~~dasl~P~l~~lvd~rh~s~~~vYGsVyaIad 409 (464)
T KOG3764|consen 350 VSSGPIPFATS--------------------IAQLWVPNFGLGFGIGLADASLIPTLGYLVDPRHVSGFNVYGSVYAIAD 409 (464)
T ss_pred HHhchhHhhhh--------------------HHHHhhhhHHHHHHHHHHHHHHhhhhHHhcchhhccccceeeeHHHHHH
Confidence 33333444433 6777778888888888777777777777777655321001678899999
Q ss_pred HHHhhhhHHHhhhhhhcccccchhhhHHHHHHHHHHHHHHHHhccc
Q 045562 199 FGMCMGTFVTLTVLNYIQDNLNWILGFGIPCILMVIALVVFLLGTK 244 (525)
Q Consensus 199 ~~~~~g~~~gp~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~ 244 (525)
.+.++|..+||.++|.+.+..|++|.-.+.++..++...++.+.+.
T Consensus 410 ~a~sla~a~GP~~gg~iv~~iGF~wl~~iig~~n~iyapvl~ll~~ 455 (464)
T KOG3764|consen 410 AAFSLAYAIGPTFGGSLVEAIGFEWLMTIIGILNLIYAPVLLLLRI 455 (464)
T ss_pred HHHHHhhhccccccchheeehhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999877777666665555554443
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=98.37 E-value=2.7e-06 Score=91.18 Aligned_cols=177 Identities=10% Similarity=0.023 Sum_probs=120.8
Q ss_pred HHHHHHHHHHHHHHHHhccccCCChHH----HHHHHHHHHHHHHhhhhhHH----HHhhhccchHHHH--HHHHHHHHHH
Q 045562 51 AERFAYYGVSSNLITYLTGPLAQSTAT----AAENVNAWSGVASLLPLFGA----FLADSFLGRYRAI--IIASLIYVLG 120 (525)
Q Consensus 51 ~~~~~~y~~~~~l~~yl~~~lg~s~~~----~~~~~~~~~~~~~~~~~~~G----~lsD~~~Grr~~~--~~~~~~~~~~ 120 (525)
+....+.-..+.++.|..++.+.+... .+++.+...+...+.+++.. ++.||..+.+... .+|.++.+++
T Consensus 283 ~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~ 362 (475)
T TIGR00924 283 VFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGAS 362 (475)
T ss_pred HHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHH
Confidence 334444444566788877665443222 55666666666666666644 4555421333433 6778888888
Q ss_pred HHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhhHHH
Q 045562 121 LGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWYFG 200 (525)
Q Consensus 121 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 200 (525)
...+.+....... ....+.+.++...++.++|.....|..++++.+..|++. |++.++.++..
T Consensus 363 ~~~~~~~~~~~~~-----------~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~------~g~~~g~~~l~ 425 (475)
T TIGR00924 363 FLTFAASIWFADA-----------GGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRL------MGQMLGMWFLA 425 (475)
T ss_pred HHHHHHHHhhcCC-----------CCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHH------HHHHHHHHHHH
Confidence 7776653110000 001347888899999999999999999999999999998 99999999999
Q ss_pred HhhhhHHHhhhhhhcccccchhhhHHHHHHHHHHHHHHHHhccc
Q 045562 201 MCMGTFVTLTVLNYIQDNLNWILGFGIPCILMVIALVVFLLGTK 244 (525)
Q Consensus 201 ~~~g~~~gp~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~ 244 (525)
..+|..+++.+.....+..+|...|...++..++..++++...|
T Consensus 426 ~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (475)
T TIGR00924 426 QAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMALMVP 469 (475)
T ss_pred HHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999887777678888887766655555444444333
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.31 E-value=8e-07 Score=91.26 Aligned_cols=116 Identities=21% Similarity=0.329 Sum_probs=101.3
Q ss_pred hhhhhhhhhHHHHHHHHhhhhhhhhhhhhhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCcCCCCCC
Q 045562 371 AASLQSFISLAIVLTIPIYDRIFVPIARTFTRKPAGITMLQRIGTGMFLSAASMTGATLVEMKRLKTAEEYGLVDKPNVT 450 (525)
Q Consensus 371 ~~~~~~~~~~~~i~~~~l~~~~~~~l~~r~~~~~~~~~~~~~i~ig~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 450 (525)
.+.++....+..+++.|+.+. +.||+-|+ +.+.+|..++.++.+..++..
T Consensus 70 ~Gll~~vf~v~~~i~sPl~gy----LadryNR~-------~v~~vG~~iW~~Av~~~~fs~------------------- 119 (493)
T KOG1330|consen 70 LGLLQTVFIVVFMIASPLFGY----LADRYNRK-------RVIAVGIFIWTLAVFASGFSN------------------- 119 (493)
T ss_pred ccchhHHHHHHHHHHHHHHHH----HHhhcCcc-------eEEeeHHHHHHHHHHHHHHHH-------------------
Confidence 345777778888899999888 67775444 889999999999999998853
Q ss_pred ccchHHHHHHHHHHHHHHHHHHhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 045562 451 IPMSVWWLIPQYALLGVSEAFTMVGLQEFFYDQVPTELRSVGLSLYLSIFGVGSFLSSFLISAIENATG 519 (525)
Q Consensus 451 ~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~~~~~~i~~~~~ 519 (525)
.+|.+.+.-.+.|+||+...|..++++++.+|.+.|++.++++++...+|..+|-...+.+.+.++
T Consensus 120 ---~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~ 185 (493)
T KOG1330|consen 120 ---HFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTF 185 (493)
T ss_pred ---HHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCcc
Confidence 678899999999999999999999999999999999999999999999999999888887776654
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=98.29 E-value=9.4e-06 Score=70.24 Aligned_cols=109 Identities=25% Similarity=0.308 Sum_probs=85.8
Q ss_pred hhHHHHHHHHhhhhhhhhhhhhhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCcCCCCCCccchHHH
Q 045562 378 ISLAIVLTIPIYDRIFVPIARTFTRKPAGITMLQRIGTGMFLSAASMTGATLVEMKRLKTAEEYGLVDKPNVTIPMSVWW 457 (525)
Q Consensus 378 ~~~~~i~~~~l~~~~~~~l~~r~~~~~~~~~~~~~i~ig~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 457 (525)
..+..++..++.++ +.||+++| +.+..+..+..++.+..... .+.+.
T Consensus 7 ~~~~~~~~~~~~g~----~~d~~g~~-------~~~~~~~~~~~~~~~~~~~~----------------------~~~~~ 53 (141)
T TIGR00880 7 YALGQLIYSPLSGL----LTDRFGRK-------PVLLVGLFIFVLSTAMFALS----------------------SNITV 53 (141)
T ss_pred ehhHHHHHHhhHHH----HHhhcchh-------HHHHHHHHHHHHHHHHHHHh----------------------ccHHH
Confidence 34455566666655 66776554 66777777777776666543 35666
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 045562 458 LIPQYALLGVSEAFTMVGLQEFFYDQVPTELRSVGLSLYLSIFGVGSFLSSFLISAIENATG 519 (525)
Q Consensus 458 l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~~~~~~i~~~~~ 519 (525)
+....++.+++.+...+....++.+..|++.|+++.++.++...+|..+++.+.+.+.+..+
T Consensus 54 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 115 (141)
T TIGR00880 54 LIIARFLQGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLG 115 (141)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccc
Confidence 77778899999999999999999999999999999999999999999999999999876543
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.4e-05 Score=81.51 Aligned_cols=172 Identities=19% Similarity=0.250 Sum_probs=138.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHHHHHHHHHH
Q 045562 47 GVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVLGLGLLTL 126 (525)
Q Consensus 47 ~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~~~~~l~~~ 126 (525)
...+...+++++=-..+=+|-.+-||++..+...+...+..+..++....|++..|..++|+...+++...++++.+..+
T Consensus 215 ~fl~l~t~a~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~ 294 (403)
T PF03209_consen 215 VFLFLGTLAFFMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIIL 294 (403)
T ss_pred HHHHHHHHHHHhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHH
Confidence 33344455555445677788889999999999999999999999999999999886559999988999988888887777
Q ss_pred hhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhhHHHHhhhhH
Q 045562 127 SAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWYFGMCMGTF 206 (525)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ 206 (525)
+... .+.+.+....+++|++.|.+....-+...|+.++++ .+..+|.+.....++..
T Consensus 295 a~~~-----------------~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~------aG~~mG~WGaaQA~A~G 351 (403)
T PF03209_consen 295 AGPL-----------------GSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGR------AGLFMGAWGAAQAIARG 351 (403)
T ss_pred HHhc-----------------ccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcc------hhHHHHHHHHHHHHHHH
Confidence 6542 225788899999999999999999999999999887 89999999999999999
Q ss_pred HHhhhhhhccc----------ccchhhhHHHHHHHHHHHHHHHHh
Q 045562 207 VTLTVLNYIQD----------NLNWILGFGIPCILMVIALVVFLL 241 (525)
Q Consensus 207 ~gp~~~~~l~~----------~~g~~~~f~~~~~~~~~~~~~~~~ 241 (525)
+|-..+|.+.| ..+|..+|.+-++.+++++.++..
T Consensus 352 lg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~ll~~ 396 (403)
T PF03209_consen 352 LGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALVLLGR 396 (403)
T ss_pred HHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 99888887643 235777888777777766665543
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.3e-05 Score=85.51 Aligned_cols=128 Identities=9% Similarity=0.012 Sum_probs=82.0
Q ss_pred hHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhccCCCCccCCCCcCCCchhHHHHH
Q 045562 75 TATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVLGLGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFF 154 (525)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (525)
....+.+...+.+...++.+++++++||+ |+|+++..+..+..+..+++.+... .....++
T Consensus 262 ~~~~~~~l~~~~i~~iig~~l~~~l~~r~-gkk~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~ 322 (460)
T PRK11462 262 PEVFVAFLTTYCVGNLIGSALAKPLTDWK-CKVTIFWWTNALLAVISLAMFFVPM------------------QASITMF 322 (460)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHHHHHhch------------------hHHHHHH
Confidence 33445566677888888999999999998 9998877655544333333322211 1122334
Q ss_pred HHHHHHHhccccCccchhhhhhccccCCCccccccc-ceehhhhHHHHhhhhHHHhhhhhhcccccch
Q 045562 155 FSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLK-SSFFNWWYFGMCMGTFVTLTVLNYIQDNLNW 221 (525)
Q Consensus 155 ~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r-~~~~~~~~~~~~~g~~~gp~~~~~l~~~~g~ 221 (525)
+..++.|++.+...+..+++.+|..+.++-+..++| +..++...+...+|..+|+.++|++.+..||
T Consensus 323 ~~~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~~Gy 390 (460)
T PRK11462 323 VFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAYGGY 390 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 444556777777777778899998885432211112 3335666678889999999888877655555
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=2e-05 Score=82.87 Aligned_cols=170 Identities=18% Similarity=0.075 Sum_probs=109.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHHH
Q 045562 40 RSALFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVL 119 (525)
Q Consensus 40 ~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~~ 119 (525)
|.++......++....++....+.|.|+++.+|.+..+.++.......+..++..+.+.+.++. ++++.+.....+..+
T Consensus 218 ~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~-~~~~~~~~~~~~~~i 296 (413)
T PRK15403 218 RLFLTGAATLSLSYIPMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDP-TEPRFIWRAVPIQLV 296 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CchhHHHHHHHHHHH
Confidence 4566555666667777777888889999999999999999988777777778777777766554 444444333333344
Q ss_pred HHHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhhHH
Q 045562 120 GLGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWYF 199 (525)
Q Consensus 120 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 199 (525)
+..++...... .. ......++..++.++|.+...|...+.. +.+.+.+ ++++.+.++.
T Consensus 297 g~~l~~~~~~~-~~--------------~~~~~~~~~~~l~~~G~~~~~p~~~~~a--l~~~~~~-----~G~a~a~~~~ 354 (413)
T PRK15403 297 GLALLIVGNLL-WP--------------HVWLWSVLGTSLYAFGIGLIFPTLFRFT--LFSNNLP-----KGTVSASLNM 354 (413)
T ss_pred HHHHHHHHHHH-cc--------------ccHHHHHHHHHHHHHHHHHHhHHHHHHH--hccCCCC-----CcHHHHHHHH
Confidence 44333322100 00 1133356677778888888777777533 2322211 6888888888
Q ss_pred HHhhhhHHHhhhhhhcccccchhhhHHHHHHHHH
Q 045562 200 GMCMGTFVTLTVLNYIQDNLNWILGFGIPCILMV 233 (525)
Q Consensus 200 ~~~~g~~~gp~~~~~l~~~~g~~~~f~~~~~~~~ 233 (525)
....+...++...+++.++ +-..+|....++..
T Consensus 355 ~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~ 387 (413)
T PRK15403 355 VILMVMAVSVEIGRWLWFN-GGRLPFHLLAVVAG 387 (413)
T ss_pred HHHHHHHHHHHHHHHHHHc-CCchHHHHHHHHHH
Confidence 8888888888888988665 55666655544433
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.6e-05 Score=77.66 Aligned_cols=153 Identities=20% Similarity=0.272 Sum_probs=112.7
Q ss_pred HHHHHHHHHHHHHhccccCCCh--HHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhc
Q 045562 54 FAYYGVSSNLITYLTGPLAQST--ATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVLGLGLLTLSAVLL 131 (525)
Q Consensus 54 ~~~y~~~~~l~~yl~~~lg~s~--~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~~~~~l~~~~~~~~ 131 (525)
..........+.+.. +++.+. ...++..+.+.+...++.++.|.++||+ |||+.+..+.....++.+++.+...
T Consensus 16 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~~~~~~~~~~~~-- 91 (338)
T COG0477 16 LDLGLLSPALPLLLS-TLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRY-GRRKVLIIGLLLFLLGTLLLALAPN-- 91 (338)
T ss_pred HhcchHHHHHHHHHH-HcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccc-cchHHHHHHHHHHHHHHHHHHhCcc--
Confidence 333333445555544 444444 5778888889999999999999999999 9998888887665555444444422
Q ss_pred cCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccC-CCcccccccceehhhhHH-HHhhhhHHHh
Q 045562 132 SGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDS-QHPLESKLKSSFFNWWYF-GMCMGTFVTL 209 (525)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~-~~~~~~~~r~~~~~~~~~-~~~~g~~~gp 209 (525)
.....+++.|+..|++.+...+...+++.|.+|+ ++ |+...+.... ...+|..++|
T Consensus 92 ----------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~ 149 (338)
T COG0477 92 ----------------VGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATE------RGLAVGLVTLGAGALGLALGP 149 (338)
T ss_pred ----------------chHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhH------HHHHHHHHHHHHHHHHHHHHH
Confidence 1267888899999999999999999999999997 44 8888888777 5788888888
Q ss_pred hhhhhcccc--cchhhhHHHHHHHH
Q 045562 210 TVLNYIQDN--LNWILGFGIPCILM 232 (525)
Q Consensus 210 ~~~~~l~~~--~g~~~~f~~~~~~~ 232 (525)
.+++.+... .+|+..|.+.....
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (338)
T COG0477 150 LLAGLLLGALLWGWRAAFLLAALLG 174 (338)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHH
Confidence 777766553 57888666555443
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.7e-06 Score=92.46 Aligned_cols=142 Identities=10% Similarity=-0.123 Sum_probs=110.2
Q ss_pred hccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhcc--CCCCccCCCCcC
Q 045562 67 LTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVLGLGLLTLSAVLLS--GSTSECQNTSCS 144 (525)
Q Consensus 67 l~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~ 144 (525)
.++.+|+++.+.|.+.....++..++..+.+++.+|+ +.|+++.++.++.+++............ ...
T Consensus 279 ~~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~-~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi--------- 348 (468)
T TIGR00788 279 TTQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTF-PYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGI--------- 348 (468)
T ss_pred EcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhC-CHHHHHHHHHHHHHHHHhCceeeeeccccccCC---------
Confidence 3467899999999999999999999999999999998 9999999999888877655432211000 000
Q ss_pred CCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhhHHHHhhhhHHHhhhhhhcccccc----
Q 045562 145 ANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWYFGMCMGTFVTLTVLNYIQDNLN---- 220 (525)
Q Consensus 145 ~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l~~~~g---- 220 (525)
...+..+...++.+++.+........++.+..|++. +++.++++....++|..+++.+++++.++.|
T Consensus 349 ---~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~------egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~~ 419 (468)
T TIGR00788 349 ---SDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGC------ESSVFALLASILHLGSSVSGFLGVLLMETIGITCD 419 (468)
T ss_pred ---CCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCc------eehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 002234445567788878878888999999999998 9999999999999999999999999988777
Q ss_pred -hhhhHHH
Q 045562 221 -WILGFGI 227 (525)
Q Consensus 221 -~~~~f~~ 227 (525)
++..+..
T Consensus 420 ~~~~~~~~ 427 (468)
T TIGR00788 420 NSNNLWLL 427 (468)
T ss_pred cccchHHH
Confidence 5544443
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.25 E-value=3.7e-06 Score=86.24 Aligned_cols=166 Identities=17% Similarity=0.181 Sum_probs=117.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhc---cchHHHHH-HHHH
Q 045562 40 RSALFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSF---LGRYRAII-IASL 115 (525)
Q Consensus 40 ~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~---~Grr~~~~-~~~~ 115 (525)
+.+..+..+.+...+.+-.=.+++++|++ ++|.+.+-.+.+-.+--+...+.+|+.|..+||. +||||-++ .+..
T Consensus 32 ~~li~v~~ia~Gvqf~wA~elsy~tPyl~-~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~ 110 (498)
T KOG0637|consen 32 RKLISVASIAAGVQFGWALELSYLTPYLQ-SLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSL 110 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccHHHH-HcCCCcccccccccccccccceecccccccccccccccccccchHHHhhH
Confidence 45555666666667776666688999997 8899988888777777777889999999999986 36666555 4456
Q ss_pred HHHHHHHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccce-eh
Q 045562 116 IYVLGLGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSS-FF 194 (525)
Q Consensus 116 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~-~~ 194 (525)
..+++..+...+.+-... -|.+..=-..+.+...++++..++=+.+-..+...-++.+|+...++ +.+ +.
T Consensus 111 ~i~~~l~Lig~aaDig~~---lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~------~~~~An 181 (498)
T KOG0637|consen 111 LIAVSLFLIGYAADIGLL---LGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDA------KKTRAN 181 (498)
T ss_pred HHHHHHhhhhhHhhhhHH---hcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChh------hhhccc
Confidence 677777777666432110 00000001223455667777777777787888899999999997665 333 99
Q ss_pred hhhHHHHhhhhHHHhhhhhhc
Q 045562 195 NWWYFGMCMGTFVTLTVLNYI 215 (525)
Q Consensus 195 ~~~~~~~~~g~~~gp~~~~~l 215 (525)
+++...+.+|..+|...++++
T Consensus 182 s~f~~f~avGnvLGY~~g~y~ 202 (498)
T KOG0637|consen 182 SVFSFFMAVGNVLGYALGSYL 202 (498)
T ss_pred hhHHHHHHhcceeeeeccccc
Confidence 999999999999998888754
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.00046 Score=73.15 Aligned_cols=166 Identities=8% Similarity=-0.006 Sum_probs=98.4
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCC-----ChHHHHHHHHHHHHHHHhh-hhhHHHHhhhccchHHHHHH
Q 045562 39 WRSALFIIGVEMAERFAYYGVSSNLITYLTGPLAQ-----STATAAENVNAWSGVASLL-PLFGAFLADSFLGRYRAIII 112 (525)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~-----s~~~~~~~~~~~~~~~~~~-~~~~G~lsD~~~Grr~~~~~ 112 (525)
.|.++......|+..+.|+.+-+ +.|.+.. +.....++-....+...+. .++-+++++|+ +|++++.+
T Consensus 6 ~~k~~~~~l~fF~il~~Y~iLR~-----lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~-~~~~lf~~ 79 (472)
T TIGR00769 6 LKKFLPLFLMFFCILFNYTILRD-----TKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNIL-SKEALFYT 79 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-----hhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHhHHH
Confidence 44555555555666666654433 3455544 3345667666665555555 88899999998 99999988
Q ss_pred HHHHHHHHHHHHHHhhhh--ccCCCCccCCCCcCCCch---------hHHHHHHHHHHHHhccccCcc-chhhhhhcccc
Q 045562 113 ASLIYVLGLGLLTLSAVL--LSGSTSECQNTSCSANQF---------QVIFFFFSLYLIALGQGGHKP-CVQAFGADQFD 180 (525)
Q Consensus 113 ~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~l~g~g~g~~~~-~~~~~~~~~~~ 180 (525)
....+++...++++.--+ +..+...-........+. +.|...+.-+...+-...... .-++++.|.++
T Consensus 80 ~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t 159 (472)
T TIGR00769 80 VISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITT 159 (472)
T ss_pred HHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 777777666666655210 000000000000000000 011111111222222233333 56899999999
Q ss_pred CCCcccccccceehhhhHHHHhhhhHHHhhhhhhcc
Q 045562 181 SQHPLESKLKSSFFNWWYFGMCMGTFVTLTVLNYIQ 216 (525)
Q Consensus 181 ~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l~ 216 (525)
.++ -.|.++++..+.++|..+++.+..++.
T Consensus 160 ~~q------akRfy~l~~~ganlg~i~sg~~~~~~~ 189 (472)
T TIGR00769 160 IDE------AKRFYALFGLGANVALIFSGRTIKYFS 189 (472)
T ss_pred HHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888 899999999999999999999888875
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=98.25 E-value=1.1e-08 Score=108.59 Aligned_cols=186 Identities=18% Similarity=0.165 Sum_probs=114.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHHHH
Q 045562 41 SALFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVLG 120 (525)
Q Consensus 41 ~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~~~ 120 (525)
+....+....+..+..+....+...++.+..+.+.. -.......+...++.+++.++.||+ |||+.++.+..+.+++
T Consensus 253 ~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-GRr~~~i~~~~~~~~~ 329 (451)
T PF00083_consen 253 RLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDRF-GRRKLLIIGLLLMAIC 329 (451)
T ss_pred cccccccccccccccccccccccccccccccccccc--ccccccccccccccccccccccccc-cccccccccccccccc
Confidence 444445555555555544444555556666777666 2222334455667777888999998 9999999998887777
Q ss_pred HHHHHH-hhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhhHH
Q 045562 121 LGLLTL-SAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWYF 199 (525)
Q Consensus 121 ~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 199 (525)
.+.++. ....... ++......+............+..+....+.+|.+|++. |+++.++.+.
T Consensus 330 ~~~~~~~~~~~~~~-----------~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~------R~~~~~~~~~ 392 (451)
T PF00083_consen 330 SLILGIIFFLGVSS-----------SSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKV------RSTGIGLSYA 392 (451)
T ss_pred cccccccccccccc-----------ccccccccceeeeeccccccccccccccccccccccccc------cccccccccc
Confidence 666641 1000000 000011111111111112222345677788999999999 9999999999
Q ss_pred HHhhhhHHHhhhhhhcccccchhhhHHHHHHHHHHHHHHHHhcccce
Q 045562 200 GMCMGTFVTLTVLNYIQDNLNWILGFGIPCILMVIALVVFLLGTKIY 246 (525)
Q Consensus 200 ~~~~g~~~gp~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~ 246 (525)
...+++.++|.+..++.+..+-...|.+.+.+.++..+..+...+|+
T Consensus 393 ~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lpET 439 (451)
T PF00083_consen 393 VGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLPET 439 (451)
T ss_pred cccccccccccccccccccccccccchhhHHHHHHHHhheeEEEeeC
Confidence 99999999999988888877734455555555555555555555543
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.15 E-value=1.7e-05 Score=75.86 Aligned_cols=156 Identities=18% Similarity=0.188 Sum_probs=94.4
Q ss_pred HHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhccCCCCccCCCCcC
Q 045562 65 TYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVLGLGLLTLSAVLLSGSTSECQNTSCS 144 (525)
Q Consensus 65 ~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 144 (525)
.|+.+++|+...+++.+..+-.....+...+.|-++|+. |||+.-+...+.++ ++.+.-. .
T Consensus 61 YyLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkq-GRKracvtycitYi----LsCiTKh-----S--------- 121 (454)
T KOG4332|consen 61 YYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQ-GRKRACVTYCITYI----LSCITKH-----S--------- 121 (454)
T ss_pred eeeehhcCccCCccceeeecccchHHHHHHHHHHHHhhh-ccccceeeehHHHH----HHHHhhc-----C---------
Confidence 467778888888998887777777788888899999998 99997665555444 3343321 1
Q ss_pred CCchhHHHHHHHHHHHHhccccCccchhh-hhhccccCCCcccccccceehhh-hHHHHhhhhHHHhhhhhhcccccc--
Q 045562 145 ANQFQVIFFFFSLYLIALGQGGHKPCVQA-FGADQFDSQHPLESKLKSSFFNW-WYFGMCMGTFVTLTVLNYIQDNLN-- 220 (525)
Q Consensus 145 ~~~~~~~~~~~~~~l~g~g~g~~~~~~~~-~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~~g~~~gp~~~~~l~~~~g-- 220 (525)
.++-.++++|.+.|+.++....+-.+ +++|-.+++. -++.+.+.-++- ..+...+-++++.+++..+.++++
T Consensus 122 ---pqYkVLmVGR~LGGiaTsLLFSaFEsWliaEHnekr~-FeqqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~slG 197 (454)
T KOG4332|consen 122 ---PQYKVLMVGRVLGGIATSLLFSAFESWLIAEHNEKRG-FEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTFSLG 197 (454)
T ss_pred ---CceEEEeehhhhhhHHHHHHHHHHHHHHHHHhhhccC-ChHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHhccC
Confidence 22567889999999998877665543 3444443221 111112222221 112223444555566666777665
Q ss_pred hhhhHHHHHHHHHHHHHHHHhcc
Q 045562 221 WILGFGIPCILMVIALVVFLLGT 243 (525)
Q Consensus 221 ~~~~f~~~~~~~~~~~~~~~~~~ 243 (525)
--.+|-..++...++..+.+-..
T Consensus 198 PVAPFdAAacfLaigmAvil~~W 220 (454)
T KOG4332|consen 198 PVAPFDAAACFLAIGMAVILSSW 220 (454)
T ss_pred CCCchHHHHHHHHHHHHHHHhhh
Confidence 55577666666666555544433
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.14 E-value=5.5e-06 Score=88.29 Aligned_cols=164 Identities=14% Similarity=0.076 Sum_probs=108.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhh----ccchHHHHHHHHH
Q 045562 40 RSALFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADS----FLGRYRAIIIASL 115 (525)
Q Consensus 40 ~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~----~~Grr~~~~~~~~ 115 (525)
+.+|...+..++.....|++..|+|.|+.+..|+|..++..+...+.++..++.++.|+++|| . .+|..+.....
T Consensus 273 p~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~-~~~~~~~~~~~ 351 (495)
T KOG2533|consen 273 PGVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIF-ARRLLFIVFLC 351 (495)
T ss_pred hhHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhH-HHHHHHHHHHH
Confidence 468888999999999999999999999998678999999999999999999999999999999 5 67777766655
Q ss_pred HHH-HHHHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceeh
Q 045562 116 IYV-LGLGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFF 194 (525)
Q Consensus 116 ~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 194 (525)
++. ++.+.+..... ......+.+....+.+...++...-..+....+. +|-+..
T Consensus 352 ~~~~~g~~~l~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~-----k~~~~~ 406 (495)
T KOG2533|consen 352 LYAIIGAISLLAAAV--------------------LPGAYGAFLIGPYGLIATAIIALSWTSANLAGNT-----KALTTV 406 (495)
T ss_pred HHHHHHHHHHHhhcc--------------------chHHhHHHHhcchhhHHHHHHHHhhccccccchH-----HhHHHH
Confidence 544 34344443322 1222222223333333334444444455554433 144444
Q ss_pred hhhHHHH-hhhhHHHhhhhhhcccccchhhhHHHHH
Q 045562 195 NWWYFGM-CMGTFVTLTVLNYIQDNLNWILGFGIPC 229 (525)
Q Consensus 195 ~~~~~~~-~~g~~~gp~~~~~l~~~~g~~~~f~~~~ 229 (525)
+.+..+. ..|.+.+++.-+.....++|...|.+..
T Consensus 407 ~~~i~~~~s~~~~~~~~~~~~~ap~y~~~~~f~~~~ 442 (495)
T KOG2533|consen 407 SAIIDGTGSAGAISGQLFRSLDAPRYGWGAVFYMLV 442 (495)
T ss_pred hhhhcchhHHHHhhhhhcccccCcchhhhhHHHHHH
Confidence 4444444 4445555555566666778998884433
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.13 E-value=5.6e-05 Score=79.16 Aligned_cols=97 Identities=15% Similarity=0.278 Sum_probs=82.2
Q ss_pred hhhhhhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCcCCCCCCccchHHHHHHHHHHHHHHHHHHhh
Q 045562 395 PIARTFTRKPAGITMLQRIGTGMFLSAASMTGATLVEMKRLKTAEEYGLVDKPNVTIPMSVWWLIPQYALLGVSEAFTMV 474 (525)
Q Consensus 395 ~l~~r~~~~~~~~~~~~~i~ig~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~ 474 (525)
++++|+| ..+.+..|+...++=++.+++++ ++|.+++.-++.|+..+....
T Consensus 428 klI~kiG-------Hv~v~~lgLa~~~~Rf~~~S~L~----------------------n~W~vLPieilqgit~aliWa 478 (618)
T KOG3762|consen 428 KLIEKIG-------HVNVMYLGLACNVGRFLYYSYLQ----------------------NPWMVLPIEILQGITHALIWA 478 (618)
T ss_pred HHHHHhc-------ccceeeehhhHHHHHHHHHHHhc----------------------CchheeeHHHHHHHHHHHHHH
Confidence 4677754 44778889999999999988864 788888899999999999999
Q ss_pred hhHHHhhhccCchhHHHHHHHHH-HHHHHHHHHHHHHHHHhhhhccC
Q 045562 475 GLQEFFYDQVPTELRSVGLSLYL-SIFGVGSFLSSFLISAIENATGG 520 (525)
Q Consensus 475 ~~~~~~~~~~P~~~rg~~~gi~~-~~~~lg~~lg~~~~~~i~~~~~~ 520 (525)
..-+|++..+|+++|..+.|+.. ...++|-.+|++++|.+.+.+|.
T Consensus 479 a~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~ 525 (618)
T KOG3762|consen 479 AIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGA 525 (618)
T ss_pred HHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehh
Confidence 99999999999999999999986 67788888888888887776653
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=98.13 E-value=1.8e-05 Score=62.06 Aligned_cols=69 Identities=25% Similarity=0.214 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHH
Q 045562 46 IGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLI 116 (525)
Q Consensus 46 ~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~ 116 (525)
-...++...+...+.++++.|+. +.|+|+.++|.+.++..+...++++++|+++||+ +|++.+.....+
T Consensus 6 k~~yf~~f~~~g~~~Pfl~~~~~-~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~-~~~~~~l~~~~~ 74 (77)
T PF12832_consen 6 KAFYFFYFAALGCLYPFLPLYLK-QLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKF-GKRKVILLGSLF 74 (77)
T ss_pred HHHHHHHHHHHHHHHhhhhHhhh-hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CccHHHHHHHHH
Confidence 34455555666677899999998 5999999999999999999999999999999999 888877766543
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.12 E-value=4.3e-06 Score=87.30 Aligned_cols=170 Identities=10% Similarity=-0.015 Sum_probs=136.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHHHHHHHH
Q 045562 45 IIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVLGLGLL 124 (525)
Q Consensus 45 ~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~~~~~l~ 124 (525)
+++..++..+..-.+..++--|++ +++..+.-.|.....-..+-++..++.+++..|+ |+-+++.+++....+=++..
T Consensus 376 ff~~av~mG~g~~lv~tFLfWHle-d~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~ki-GHv~v~~lgLa~~~~Rf~~~ 453 (618)
T KOG3762|consen 376 FFFVAVVMGAGVGLVFTFLFWHLE-DLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKI-GHVNVMYLGLACNVGRFLYY 453 (618)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHh-hcCCcceeeeehhhhhccchHHHHHHHHHHHHHh-cccceeeehhhHHHHHHHHH
Confidence 445555555665556667766665 6666666666555555667778888999999998 99999999999988888888
Q ss_pred HHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhhHHHH-hh
Q 045562 125 TLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWYFGM-CM 203 (525)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~-~~ 203 (525)
....+ .|+.+..-+++|+..+..+.++-+++++..|++- |.++.++..... .+
T Consensus 454 S~L~n--------------------~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l------~at~Q~l~~g~f~Gl 507 (618)
T KOG3762|consen 454 SYLQN--------------------PWMVLPIEILQGITHALIWAAIISYASHVAPPGL------RATAQGLLQGIFHGL 507 (618)
T ss_pred HHhcC--------------------chheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcc------hHHHHHHHHHHhccc
Confidence 88755 6888888999999999999999999999999998 899998866655 79
Q ss_pred hhHHHhhhhhhcccccchhhhHHHHHHHHHHHHHHHHhc
Q 045562 204 GTFVTLTVLNYIQDNLNWILGFGIPCILMVIALVVFLLG 242 (525)
Q Consensus 204 g~~~gp~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~ 242 (525)
|-.+|.+++|.+.+.+|-+..|.+.++..++.++.+...
T Consensus 508 G~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~~~~i 546 (618)
T KOG3762|consen 508 GKGLGSLIGGFVVERFGARTTFRIFGIACLVTLALFISI 546 (618)
T ss_pred CcchhhhhhhhhheeehhHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999988887666655544443
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=98.10 E-value=3.3e-05 Score=83.38 Aligned_cols=169 Identities=12% Similarity=0.014 Sum_probs=110.8
Q ss_pred HHHHHHHHHHHHHHHHHHhcc--ccCCCh------HHHHHHHHHHHHHHHhhhhhH----HHHhhhccchHHHHHHHHHH
Q 045562 49 EMAERFAYYGVSSNLITYLTG--PLAQST------ATAAENVNAWSGVASLLPLFG----AFLADSFLGRYRAIIIASLI 116 (525)
Q Consensus 49 ~~~~~~~~y~~~~~l~~yl~~--~lg~s~------~~~~~~~~~~~~~~~~~~~~~----G~lsD~~~Grr~~~~~~~~~ 116 (525)
.+.....+|.+..-.+.++.. ..+.+. ...++..+...+...+..++. +++.||+ +..+.+.+|.++
T Consensus 281 ~~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~~~~~~~~l~~r~-~~~~~~~~G~~l 359 (500)
T PRK09584 281 LMLEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPILAAIYNKMGDRL-PMPHKFAIGMVL 359 (500)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHHHHHHHHHHHHHHHhCcCC-CcHHHHHHHHHH
Confidence 345556666666666666442 111111 113444555555555555555 6666665 677888889999
Q ss_pred HHHHHHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhh
Q 045562 117 YVLGLGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNW 196 (525)
Q Consensus 117 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 196 (525)
.+++...+......... | ...+.+.++...+++++|.+...|...+++.+..|++. |++++|.
T Consensus 360 ~~l~f~~l~~~~~~~~~---------~--~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~------rg~~~g~ 422 (500)
T PRK09584 360 CSGAFLVLPLGAKFAND---------A--GIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRL------MGFIMGS 422 (500)
T ss_pred HHHHHHHHHHHHHhcCC---------C--CccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHH------HHHHHHH
Confidence 99998887766432110 1 01234578889999999999999999999999999998 9999999
Q ss_pred hHHHHhhhhHHHhhhhhhcc----------cccchhhhHHHHHHHHHHH
Q 045562 197 WYFGMCMGTFVTLTVLNYIQ----------DNLNWILGFGIPCILMVIA 235 (525)
Q Consensus 197 ~~~~~~~g~~~gp~~~~~l~----------~~~g~~~~f~~~~~~~~~~ 235 (525)
++....+|..++..+.+... ...++...|...++..++.
T Consensus 423 ~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~ 471 (500)
T PRK09584 423 WFLTTAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVI 471 (500)
T ss_pred HHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHH
Confidence 88877777777766664221 1123667776666554433
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.0062 Score=62.99 Aligned_cols=65 Identities=20% Similarity=0.188 Sum_probs=57.1
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 045562 453 MSVWWLIPQYALLGVSEAFTMVGLQEFFYDQVPTELRSVGLSLYLSIFGVGSFLSSFLISAIENA 517 (525)
Q Consensus 453 ~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~~~~~~i~~~ 517 (525)
.+.|.+....+..|+-.+...+.....+.+..|+++|-.++|.....-.+|-.++..++-.+.+.
T Consensus 333 psi~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~le~~ 397 (402)
T PF02487_consen 333 PSIWIVFVLIFYEGLLGGASYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPLEPW 397 (402)
T ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 36777777888889999999999999999999999999999999999999999999888777654
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.0048 Score=62.28 Aligned_cols=159 Identities=16% Similarity=0.143 Sum_probs=95.9
Q ss_pred cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhh-----hccchHHH
Q 045562 35 KYGGWRSALFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLAD-----SFLGRYRA 109 (525)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD-----~~~Grr~~ 109 (525)
.|+..++++.+++.+.....-+ +...-+|..++ .-|.|-++.+....++. =...-+++..+.| |+ ||||.
T Consensus 26 ~~~d~~~illLl~LYllQGiP~-GL~~~iP~lL~-ak~vSyt~~a~fS~ay~--P~sLKllWaPiVDs~y~k~~-Grrks 100 (510)
T KOG3574|consen 26 LKGDRSSILLLLFLYLLQGIPL-GLIGAIPLLLQ-AKGVSYTSQAIFSFAYW--PFSLKLLWAPIVDSVYSKRF-GRRKS 100 (510)
T ss_pred hhhhhhhHHHHHHHHHHcCCch-hHhhhhHHHhc-CCCcchhhhhhhhhhhh--HHHHHHHHHhhhHHHHHHhh-ccccc
Confidence 4566778899999888876655 45556666555 67888887775544433 2245677788888 98 88876
Q ss_pred HHH-HHHHHHHHHHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCccccc
Q 045562 110 III-ASLIYVLGLGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESK 188 (525)
Q Consensus 110 ~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~ 188 (525)
-+. +..+......+++...+.....+. ..++........+++-+..+..-.++....-.+..+++
T Consensus 101 Wvvp~q~llG~~mllLs~~v~~~~g~ng---------~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~----- 166 (510)
T KOG3574|consen 101 WVVPCQYLLGLFMLLLSYLVDRGLGGNG---------GLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSREN----- 166 (510)
T ss_pred eeeehHHHHHHHHHHHhhCCCcccccCC---------CCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhh-----
Confidence 543 333332333333322221111010 01122223334455666666666677777777888887
Q ss_pred ccceehhhhHHHHhhhhHHHhhhhh
Q 045562 189 LKSSFFNWWYFGMCMGTFVTLTVLN 213 (525)
Q Consensus 189 ~r~~~~~~~~~~~~~g~~~gp~~~~ 213 (525)
.+-+.....++.+.|..++..+.-
T Consensus 167 -lgyaST~q~Vg~~~GyfL~~~ifL 190 (510)
T KOG3574|consen 167 -LGYASTCQSVGQTAGYFLGNVVFL 190 (510)
T ss_pred -cCchhHHHHHHHhhhHHhhcceee
Confidence 788888888888888888765543
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=97.97 E-value=8.6e-05 Score=79.03 Aligned_cols=207 Identities=9% Similarity=-0.026 Sum_probs=138.1
Q ss_pred CccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cCCCh------HH----HHHHHHHHHHHHHhhhhhHHHHhh
Q 045562 33 RSKYGGWRSALFIIGVEMAERFAYYGVSSNLITYLTGP-LAQST------AT----AAENVNAWSGVASLLPLFGAFLAD 101 (525)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~-lg~s~------~~----~~~~~~~~~~~~~~~~~~~G~lsD 101 (525)
+..++.||.++.+..+.++.=++.+.+..+...|+.++ ++-++ .+ ..+....+.+...+..++.-++.+
T Consensus 251 ~~~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~ 330 (477)
T TIGR01301 251 GAFKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCR 330 (477)
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567789999999999999889888888888887743 33221 11 123334445555566677788899
Q ss_pred hccc-hHHHHHHHHHHHHHHHHHHHHhhhhccC-CCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccc
Q 045562 102 SFLG-RYRAIIIASLIYVLGLGLLTLSAVLLSG-STSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQF 179 (525)
Q Consensus 102 ~~~G-rr~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~ 179 (525)
++ | ||++...+.++.+++.....+..+.... +...-....=.+.....+..++...+.|+..+.....-.+++++..
T Consensus 331 ~~-g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~ 409 (477)
T TIGR01301 331 GW-GAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAITYSIPFALASIRS 409 (477)
T ss_pred Hh-ccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHc
Confidence 98 7 5677788888888887777655421000 0000000000000111355666677889998888888899999999
Q ss_pred cCCCcccccccceehhhhHHHHhhhhHHHhhhhhhcccccc--hhhhHHHHHHHHHHHHHHHHhccc
Q 045562 180 DSQHPLESKLKSSFFNWWYFGMCMGTFVTLTVLNYIQDNLN--WILGFGIPCILMVIALVVFLLGTK 244 (525)
Q Consensus 180 ~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l~~~~g--~~~~f~~~~~~~~~~~~~~~~~~~ 244 (525)
+++.. +.|..+|+.+.+..+.+.+..+..|.+.+.+| -...+.+.++.++++.+..+...+
T Consensus 410 ~~~~~----~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~ 472 (477)
T TIGR01301 410 SNLGA----GQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLP 472 (477)
T ss_pred cccCC----CCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCC
Confidence 95431 16999999999999999999988888655554 566777788877776666555544
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.0002 Score=75.18 Aligned_cols=91 Identities=16% Similarity=0.137 Sum_probs=81.5
Q ss_pred hhhhhhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCcCCCCCCccchHHHHHHHHHHHHHHHHHHhh
Q 045562 395 PIARTFTRKPAGITMLQRIGTGMFLSAASMTGATLVEMKRLKTAEEYGLVDKPNVTIPMSVWWLIPQYALLGVSEAFTMV 474 (525)
Q Consensus 395 ~l~~r~~~~~~~~~~~~~i~ig~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~ 474 (525)
.+.||++-| +.+.++.+.+++..++..+. .+++.+.+..++.|++|+...
T Consensus 84 lLaDrlG~K-------~vL~l~~l~Wsl~t~L~~fa----------------------~Sl~~L~i~R~llGvaEA~~~- 133 (511)
T TIGR00806 84 LLTDYLRYK-------PVLVLQALSFVCVWLLLLLG----------------------TSVWHMQLMEVFYSVTMAARI- 133 (511)
T ss_pred HHHHHhCch-------HHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHHH-
Confidence 378886554 88999999999998888875 378889999999999999999
Q ss_pred hhHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 045562 475 GLQEFFYDQVPTELRSVGLSLYLSIFGVGSFLSSFLISAIE 515 (525)
Q Consensus 475 ~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~~~~~~i~ 515 (525)
....++++.+|+++|++++|+++....+|.++++.+.+++.
T Consensus 134 A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~ 174 (511)
T TIGR00806 134 AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLV 174 (511)
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999844
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.018 Score=60.43 Aligned_cols=187 Identities=10% Similarity=-0.059 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHH----
Q 045562 42 ALFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIY---- 117 (525)
Q Consensus 42 ~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~---- 117 (525)
.+.+....+..++..=+..--.+.|+.+-+.-+---++..-..-.+...+..+..|.+.||. .|.+++..+.+.-
T Consensus 4 ~~~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~-~Rl~~~~~~l~~Qn~sv 82 (432)
T PF06963_consen 4 LWRLYLSHFLSTWGDRMWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRS-PRLKVIRTSLVVQNLSV 82 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCC-cchhhHHHHHHHHHHHH
Confidence 45555666666666655555566777644433333333333344566777788889999998 9999988776542
Q ss_pred HHHHHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHh-ccccCccchhhhhhccccCCCcccccccceehhh
Q 045562 118 VLGLGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIAL-GQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNW 196 (525)
Q Consensus 118 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~-g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 196 (525)
+++..++........... . +......+++...+.+. ..=......-+.=-|++..=..++...+.+.-+.
T Consensus 83 ~~s~~~~~~l~~~~~~~~--------~-~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~ 153 (432)
T PF06963_consen 83 AASCALFLLLLSYPSSSS--------Q-SSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALARMNAT 153 (432)
T ss_pred HHHHHHHHHHHhCCcccc--------c-cchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHHHHHHH
Confidence 222222222211111000 0 01112222222222221 1111111222222444431110111113444444
Q ss_pred hHHHHhhhhHHHhhhhhhcccccchhhhHHHHHHHHHHHHHH
Q 045562 197 WYFGMCMGTFVTLTVLNYIQDNLNWILGFGIPCILMVIALVV 238 (525)
Q Consensus 197 ~~~~~~~g~~~gp~~~~~l~~~~g~~~~f~~~~~~~~~~~~~ 238 (525)
+--.-.+.-++||++.|.+.+..|......+.+...++.+.+
T Consensus 154 mRRIDL~ckllaPl~vG~l~t~~s~~~~~~~i~~~N~~S~~v 195 (432)
T PF06963_consen 154 MRRIDLFCKLLAPLFVGLLMTFASPVIAAIFIAGWNLASVFV 195 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHH
Confidence 444446789999999999999888887777666666666554
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00012 Score=78.86 Aligned_cols=112 Identities=13% Similarity=0.139 Sum_probs=85.8
Q ss_pred hhhhHHHHHHHHhhhhhhhhhhhh-hccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCcCCCCCCccch
Q 045562 376 SFISLAIVLTIPIYDRIFVPIART-FTRKPAGITMLQRIGTGMFLSAASMTGATLVEMKRLKTAEEYGLVDKPNVTIPMS 454 (525)
Q Consensus 376 ~~~~~~~i~~~~l~~~~~~~l~~r-~~~~~~~~~~~~~i~ig~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 454 (525)
........+..++.++ +.|| +||| +.+.+|.++++++.+...+.. ..
T Consensus 57 ~~~~~~~~~~~~~~G~----laDr~~G~r-------~~~~~g~~~~~~g~~~~~~~~---------------------~~ 104 (489)
T PRK10207 57 GAFAALVYGLISIGGY----VGDHLLGTK-------RTIVLGAIVLAIGYFMTGMSL---------------------LK 104 (489)
T ss_pred HHHHHHHHHHHhhHHH----hhhhccchH-------HHHHHHHHHHHHHHHHHHHhc---------------------cc
Confidence 3334444455555555 7888 6666 889999999999888777631 11
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHhhhccCch--hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 045562 455 VWWLIPQYALLGVSEAFTMVGLQEFFYDQVPTE--LRSVGLSLYLSIFGVGSFLSSFLISAIENATG 519 (525)
Q Consensus 455 ~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~--~rg~~~gi~~~~~~lg~~lg~~~~~~i~~~~~ 519 (525)
...+....++.++|.++..|...+++.++.|++ .|+.+.+++++..++|..+|+.+.+++.+..|
T Consensus 105 ~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~g 171 (489)
T PRK10207 105 PDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFG 171 (489)
T ss_pred hhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 222445677889999999999999999999887 45889999999999999999999999987653
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00017 Score=79.94 Aligned_cols=172 Identities=17% Similarity=0.133 Sum_probs=118.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHH-HHHhhhhhHHHHhhhccc--hHHHHHHHHHH
Q 045562 40 RSALFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSG-VASLLPLFGAFLADSFLG--RYRAIIIASLI 116 (525)
Q Consensus 40 ~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~-~~~~~~~~~G~lsD~~~G--rr~~~~~~~~~ 116 (525)
|..+...+..++....++++..++|.|+++.+|+++.+++++.+...+ +..++.+++|+++||+ + .|+++.+++++
T Consensus 330 ~~f~~~~l~~~~~~~~~~~~~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~-~~~~~~~~~~~~~~ 408 (633)
T TIGR00805 330 PIYMLVILAQVIDSLAFNGYITFLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKF-KLNVKKAAYFAICL 408 (633)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeee-cccHHHHHHHHHHH
Confidence 356777778888899999999999999999999999999999887765 5678999999999998 6 56777777766
Q ss_pred HHHHHHHHHH---h----------h----h-----------------hccCCCC--------------------------
Q 045562 117 YVLGLGLLTL---S----------A----V-----------------LLSGSTS-------------------------- 136 (525)
Q Consensus 117 ~~~~~~l~~~---~----------~----~-----------------~~~~~~~-------------------------- 136 (525)
.+++.++... . + . ....-.|
T Consensus 409 ~~~~~~~~~~~~~~~C~~~~~agv~~~y~~~~~~~~~~~~Cn~~C~C~~~~~~PVCg~~~~tY~SpC~AGC~~~~~~~~~ 488 (633)
T TIGR00805 409 STLSYLLCSPLFLIGCESAPVAGVNNPSTDQSIYVENPTDCNRQCSCDSSFFDPVCGDNGLAYLSPCHAGCSMSVGTGSN 488 (633)
T ss_pred HHHHHHHHHHHHeecCCCCccceeeccCCCcccCCCChhccCCCCCCCCCCcccccCCCCCEEECccccCCCCccCCCCc
Confidence 6666544221 0 0 0 0000000
Q ss_pred -ccCCCC--------------cCCCchh-HHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhhHHH
Q 045562 137 -ECQNTS--------------CSANQFQ-VIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWYFG 200 (525)
Q Consensus 137 -~~~~~~--------------~~~~~~~-~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 200 (525)
.|.+-+ |.++=.. +..+++..++..+..+.........+-+.+|+++ |+.++|+....
T Consensus 489 ~~y~~CsCi~~~~~~~a~~g~C~~~C~~~~~~f~~~~~~~~~~~~~~~~p~~~i~lR~V~~~~------rs~alg~~~~~ 562 (633)
T TIGR00805 489 MVYTNCSCVQTPGNSSAKKGLCNPPCATSLLYFLILFIPLSFIAFITAVPLYMVLLRVVNPEE------KSLAIGLQWLC 562 (633)
T ss_pred ceecccccccCCCCCCCcCCCCCcccchhHHHHHHHHHHHHHHHHhccCchheEEeeccCccc------chHHhhHHHHH
Confidence 022222 3322222 3344444444444444444555566778999999 99999996666
Q ss_pred H-hhhhHHHhhhhhhcccc
Q 045562 201 M-CMGTFVTLTVLNYIQDN 218 (525)
Q Consensus 201 ~-~~g~~~gp~~~~~l~~~ 218 (525)
. -+|.+-+|++-|++.|.
T Consensus 563 ~rllg~iP~pi~fG~~iD~ 581 (633)
T TIGR00805 563 MRVFATIPAPILFGLLIDV 581 (633)
T ss_pred HHHhcCCChhHHHhhhhhc
Confidence 5 68889999999999885
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.76 E-value=2.9e-05 Score=79.87 Aligned_cols=181 Identities=15% Similarity=0.126 Sum_probs=124.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHH--------HHHHHHHHHHHh-hhhhHHHHhhhccchHHHH
Q 045562 40 RSALFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAA--------ENVNAWSGVASL-LPLFGAFLADSFLGRYRAI 110 (525)
Q Consensus 40 ~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~--------~~~~~~~~~~~~-~~~~~G~lsD~~~Grr~~~ 110 (525)
+.++......|....++|+.--+...-++ .+|+.+.... ........++.+ +..++.++.|++ |||+..
T Consensus 304 ~~Llgt~~~WFllDiafy~~nL~~s~I~~-~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~i-GRk~iq 381 (538)
T KOG0252|consen 304 KHLLGTAGTWFLLDIAFYGQNLFQSVIFS-AIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDII-GRKYIQ 381 (538)
T ss_pred HHHHHHHHHHHhhhhhhhccccHHHHHHH-hhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehh-hhHHHH
Confidence 45566667777788888877655554443 4455443222 222223333333 666778899998 999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCccccccc
Q 045562 111 IIASLIYVLGLGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLK 190 (525)
Q Consensus 111 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r 190 (525)
+.+.+++.+..+.++...+..-.. ...++..-+.+-+++-+...+...+.+|.||++. |
T Consensus 382 ~~GF~~~~i~~~~~~~~y~~~~~~---------------~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParv------R 440 (538)
T KOG0252|consen 382 LMGFFIMTIFFFVIAGPYNQLENT---------------IGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARV------R 440 (538)
T ss_pred HhhHHHHHHHHHHHcCCccccccc---------------CceeehHHHHHHHHhcCCCceeEEeehhhchHHH------h
Confidence 999998888777777654311110 1222222223334444444566667799999999 9
Q ss_pred ceehhhhHHHHhhhhHHHhhhhhhccc-----ccchhhhHHHHHHHHHHHHHHHHhcc
Q 045562 191 SSFFNWWYFGMCMGTFVTLTVLNYIQD-----NLNWILGFGIPCILMVIALVVFLLGT 243 (525)
Q Consensus 191 ~~~~~~~~~~~~~g~~~gp~~~~~l~~-----~~g~~~~f~~~~~~~~~~~~~~~~~~ 243 (525)
+++.++.-..+-+|+++|.....++.+ ..|.+.+|++.+.+++++++..++.+
T Consensus 441 ~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~p 498 (538)
T KOG0252|consen 441 STCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTLLIP 498 (538)
T ss_pred hhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHheeEEee
Confidence 999999999999999999999999998 78899999999988888887766655
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0003 Score=76.19 Aligned_cols=192 Identities=14% Similarity=0.066 Sum_probs=104.8
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHH
Q 045562 39 WRSALFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYV 118 (525)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~ 118 (525)
+|..........+..+..+....+....+.+..|.+... ............++..++.++.||+ |||+.++.+...+.
T Consensus 293 ~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~-gRr~lll~s~~~m~ 370 (513)
T KOG0254|consen 293 RKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDT-FLASIILGVVNFLGTLVATYLVDRF-GRRKLLLFGAAGMS 370 (513)
T ss_pred HHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHhHHHHH
Confidence 344444555555555554444333333344566665443 3444456667777788889999999 99999999999999
Q ss_pred HHHHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhhH
Q 045562 119 LGLGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWY 198 (525)
Q Consensus 119 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 198 (525)
++.++++........... |..... ...+....+.......+..|..+.+.+|.+|.+. |+++.++..
T Consensus 371 ~~~~~~~~~~~~~~~~~~------~~~~~~-~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~------r~~~~s~~~ 437 (513)
T KOG0254|consen 371 ICLVILAVVGVFALYYPN------SSKGAG-WLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRL------RSKGASLAV 437 (513)
T ss_pred HHHHHHHHHHHHhccCCC------cccchh-HHHHHHHHHHHHHHhcccccchhhhhhccCcHhH------HhhhHHHHH
Confidence 999888866432111000 011111 2222222222333334445667788899999998 888888855
Q ss_pred HHHhhhhHHHhhhhhhcccccchhhhHHHHHHHHHHHHH-HHHhcccc
Q 045562 199 FGMCMGTFVTLTVLNYIQDNLNWILGFGIPCILMVIALV-VFLLGTKI 245 (525)
Q Consensus 199 ~~~~~g~~~gp~~~~~l~~~~g~~~~f~~~~~~~~~~~~-~~~~~~~~ 245 (525)
....+...+-......+.+..++...|........+... ..+...+|
T Consensus 438 ~~n~~~~~~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~~~fv~~~~pE 485 (513)
T KOG0254|consen 438 AVNWLWNFLISFFFPFITEALGIGGTFGYFGGICLLSLIIFVFFFVPE 485 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHheEEccc
Confidence 544333332222222333333334444444443333333 34444443
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00065 Score=72.67 Aligned_cols=111 Identities=14% Similarity=0.083 Sum_probs=77.5
Q ss_pred hhhHHHHHHHHhhhhhhhhhhhhh-ccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCcCCCCCCccchH
Q 045562 377 FISLAIVLTIPIYDRIFVPIARTF-TRKPAGITMLQRIGTGMFLSAASMTGATLVEMKRLKTAEEYGLVDKPNVTIPMSV 455 (525)
Q Consensus 377 ~~~~~~i~~~~l~~~~~~~l~~r~-~~~~~~~~~~~~i~ig~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 455 (525)
.......+..++.+. +.||+ |+| +.+.+|.++.+++.+.....+ .+.
T Consensus 53 ~~~~~~~l~~ligG~----LaDRilGrr-------r~iliG~il~~lg~lll~~~~---------------------~~~ 100 (493)
T PRK15462 53 AYCSLVYVTPILGGF----LADKVLGNR-------MAVMLGALLMAIGHVVLGASE---------------------IHP 100 (493)
T ss_pred HHHHHHHHHHHHHHH----HHHHccCcH-------HHHHHHHHHHHHHHHHHHHhh---------------------cch
Confidence 333444444445444 78886 555 678889888888876554321 111
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHhhhccCch--hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 045562 456 WWLIPQYALLGVSEAFTMVGLQEFFYDQVPTE--LRSVGLSLYLSIFGVGSFLSSFLISAIENATG 519 (525)
Q Consensus 456 ~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~--~rg~~~gi~~~~~~lg~~lg~~~~~~i~~~~~ 519 (525)
..+.....+..+|.++..+...+++.+..|++ .|+.+.++++...++|+.++|.+.+++.+..|
T Consensus 101 ~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~G 166 (493)
T PRK15462 101 SFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYS 166 (493)
T ss_pred hHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhC
Confidence 22333444555666777777788999999876 79999999999999999999999999976554
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.001 Score=72.32 Aligned_cols=154 Identities=8% Similarity=0.005 Sum_probs=108.0
Q ss_pred cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChH---HHHHHHHHHHHHHHhhhhhHHHHhhhccchH-HHH
Q 045562 35 KYGGWRSALFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTA---TAAENVNAWSGVASLLPLFGAFLADSFLGRY-RAI 110 (525)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~---~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr-~~~ 110 (525)
+.+.+|.....+++.|+....+|+...+.|.....-++-+.. ..++....+.++..++.++.|.+.-++ +|- ..+
T Consensus 305 Lf~~~r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~i-r~~Kw~l 383 (599)
T PF06609_consen 305 LFKDRRGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKI-RHIKWQL 383 (599)
T ss_pred HhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHc-cchhHHH
Confidence 344457777778888888888999888888877666655543 566777778888888888899999877 654 444
Q ss_pred HHHHHHHHHHHHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCccccccc
Q 045562 111 IIASLIYVLGLGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLK 190 (525)
Q Consensus 111 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r 190 (525)
+.+.+++.++..+++.... ++ ....+...++.|+|.|.........+.-..|+++ .
T Consensus 384 i~~~~~~ta~~Gama~~~~----------------~n--~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~------i 439 (599)
T PF06609_consen 384 IFGSVLMTAFCGAMAAVRP----------------DN--KNAAIAFLVLAGFGIGGILVPAIVIAQLIVPDED------I 439 (599)
T ss_pred HHHHHHHHHHHHHHHHccC----------------CC--cchHHHHHHHHHHhHHHHHHHHHHeeEeeeCchH------H
Confidence 5666666665555554321 11 2233455678888888877666666666678777 8
Q ss_pred ceehhhhHHHHhhhhHHHhhhhh
Q 045562 191 SSFFNWWYFGMCMGTFVTLTVLN 213 (525)
Q Consensus 191 ~~~~~~~~~~~~~g~~~gp~~~~ 213 (525)
+.+.++....-.+|+.+|..+..
T Consensus 440 g~a~gL~~s~R~~GGsIg~aIy~ 462 (599)
T PF06609_consen 440 GTATGLTGSIRSIGGSIGYAIYN 462 (599)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHH
Confidence 88888887777888777766553
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00092 Score=67.52 Aligned_cols=152 Identities=13% Similarity=0.145 Sum_probs=112.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHh-ccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccc-hHHHHHHHHHHHH
Q 045562 41 SALFIIGVEMAERFAYYGVSSNLITYL-TGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLG-RYRAIIIASLIYV 118 (525)
Q Consensus 41 ~~~~~~~~~~~~~~~~y~~~~~l~~yl-~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~G-rr~~~~~~~~~~~ 118 (525)
.++.++....+...-.|....+...++ .+.+|+++.+.|.+.+.-.+...+.+..-....||..| -+-.+..++.++.
T Consensus 261 ~~~~i~~l~~~ly~~l~s~~~~t~~~l~~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~v 340 (451)
T KOG2615|consen 261 SVLRIFGLHYFLYLELFSGLENTVLFLTHGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIV 340 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHhhcCccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHH
Confidence 455555555554455555555555555 56799999999998888888888888888888888733 3444444444444
Q ss_pred HHHHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhhH
Q 045562 119 LGLGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWY 198 (525)
Q Consensus 119 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 198 (525)
-..++...... ...++.+..+-.+..+...++...++....|+++ ||.+.|+..
T Consensus 341 P~~llls~~~~--------------------~~~l~~~s~l~sf~~A~~vt~Lt~Lv~~~~~~~q------rG~~~Gi~~ 394 (451)
T KOG2615|consen 341 PAFLLLSLART--------------------PVVLYLGSTLKSFSTASVVTCLTSLVHKYGPQSQ------RGTLNGIFR 394 (451)
T ss_pred HHHHHHhcccc--------------------chhhhHHHHHHHHHHHHhhHHHHHHHHhcCCccc------chHHHHHHH
Confidence 44444444432 4667778888888888889999999999999999 999999999
Q ss_pred HHHhhhhHHHhhhhhhcccc
Q 045562 199 FGMCMGTFVTLTVLNYIQDN 218 (525)
Q Consensus 199 ~~~~~g~~~gp~~~~~l~~~ 218 (525)
..++++-.+||+++|.+..+
T Consensus 395 Sl~alaRaiGPlv~g~i~~W 414 (451)
T KOG2615|consen 395 SLGALARAIGPLVSGVIFSW 414 (451)
T ss_pred HHHHHHHHhhhhhhheeEEE
Confidence 99999999999999877653
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0036 Score=56.20 Aligned_cols=109 Identities=11% Similarity=0.094 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHH
Q 045562 79 AENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVLGLGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLY 158 (525)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (525)
-...++......+..++.+.+.+++ |.|+.+++|.+.+.+-........ .+.++.+-.
T Consensus 40 ~~slai~Y~~~~~s~l~~P~iv~~l-g~K~sm~lg~~~y~~y~~~~~~~~---------------------~~~l~~~s~ 97 (156)
T PF05978_consen 40 YYSLAILYGSFAISCLFAPSIVNKL-GPKWSMILGSLGYAIYIASFFYPN---------------------SYTLYPASA 97 (156)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHhhh---------------------HHHHHHHHH
Confidence 3344555666777788888999998 999999999987775544433322 578889999
Q ss_pred HHHhccccCccchhhhhhccccCCCcccccccceehhhhHHHHhhhhHHHhhhhhhc
Q 045562 159 LIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWYFGMCMGTFVTLTVLNYI 215 (525)
Q Consensus 159 l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l 215 (525)
+.|++.+..+.+...++.+..++++ |++-.+++....+.+.++|.++.-.+
T Consensus 98 l~G~~~a~lW~aqg~ylt~~s~~~~------~~~~~~ifw~i~~~s~i~G~~~~~~~ 148 (156)
T PF05978_consen 98 LLGFGAALLWTAQGTYLTSYSTEET------IGRNTGIFWAIFQSSLIFGNLFLFFI 148 (156)
T ss_pred HHhhhhHHhhHhhhHHHHHcCCHHH------HhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999888877 88888888877787877776655433
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0021 Score=68.17 Aligned_cols=151 Identities=18% Similarity=0.147 Sum_probs=115.3
Q ss_pred CcchHHHHHHHHHHH-HHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHH-HHhhhccchHHHHHHHHH
Q 045562 38 GWRSALFIIGVEMAE-RFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGA-FLADSFLGRYRAIIIASL 115 (525)
Q Consensus 38 ~~~~~~~~~~~~~~~-~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G-~lsD~~~Grr~~~~~~~~ 115 (525)
+.|..+.+.+..++. -...-...-.++.|+...++++..+.+...+.......+.+++.. .+.-.+ |-|+++..|+.
T Consensus 238 ~~r~~l~l~l~~~~~~~~~~~~~~~~~~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l-~~~~~i~lGl~ 316 (463)
T KOG2816|consen 238 PDRLLLLLLLVAFLSSLPEAGGASDVLLLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSIL-GEKRLISLGLL 316 (463)
T ss_pred CCccchHHHHHHHHHHHHHhcCceeEEEEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhHhhHHHH
Confidence 334445444444332 222222222456788899999999999998988888888888777 666666 99999999999
Q ss_pred HHHHHHHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehh
Q 045562 116 IYVLGLGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFN 195 (525)
Q Consensus 116 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 195 (525)
...+...+.++... .|+++....+.+ ..+...|...++++.+.++++ ++++++
T Consensus 317 ~~~~~~~~~af~~~--------------------~w~~~~~~v~~~-~~~~~~pa~~s~~s~~v~~~e------~g~v~~ 369 (463)
T KOG2816|consen 317 SEFLQLLLFAFATE--------------------TWMMFAAGVVVA-LAGIVFPAIRAFASILVSPEE------QGKVFG 369 (463)
T ss_pred HHHHHHHHHHHhcc--------------------chhhhHHHHHHH-hhcchhHHHHhHHHhhccccc------ccchhh
Confidence 99999999998854 466665555444 446667999999999999999 999999
Q ss_pred hhHHHHhhhhHHHhhhhhhcc
Q 045562 196 WWYFGMCMGTFVTLTVLNYIQ 216 (525)
Q Consensus 196 ~~~~~~~~g~~~gp~~~~~l~ 216 (525)
+.+..-.+.+.++|.+-+.+.
T Consensus 370 ~is~i~~l~~~~~~~~~~~i~ 390 (463)
T KOG2816|consen 370 IISGIEGLSGVVSPALYGNIF 390 (463)
T ss_pred HHHHHHHHhhhhhHHHHHHHH
Confidence 999999999999999887663
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=97.20 E-value=8.2e-05 Score=80.63 Aligned_cols=170 Identities=17% Similarity=0.202 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHH-HHHhhhhhHHHHhhhc-cchHHHHHHHHHHHHHH
Q 045562 43 LFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSG-VASLLPLFGAFLADSF-LGRYRAIIIASLIYVLG 120 (525)
Q Consensus 43 ~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~-~~~~~~~~~G~lsD~~-~Grr~~~~~~~~~~~~~ 120 (525)
.+..+...++.+..-++..++|.|++.+++.++.++.++.+...+ +..++.+++|++..|+ ++.|+++.+..+...++
T Consensus 308 ~~~~la~~~~~~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~v~ 387 (539)
T PF03137_consen 308 MCLILAGVFESFIVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSIVS 387 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHHHHH
Confidence 445566667888888889999999999999999999988877655 6678899999999998 34555555544443333
Q ss_pred HHH---HHHhh-----------hh--------ccCCCCcc-----------CCCCcCCC-chhHHHHHHHHHHHHhcccc
Q 045562 121 LGL---LTLSA-----------VL--------LSGSTSEC-----------QNTSCSAN-QFQVIFFFFSLYLIALGQGG 166 (525)
Q Consensus 121 ~~l---~~~~~-----------~~--------~~~~~~~~-----------~~~~~~~~-~~~~~~~~~~~~l~g~g~g~ 166 (525)
.++ ..+.. .+ .......| ..+.|..+ ...+..+++..++..+..+.
T Consensus 388 ~~~~~~~~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~~~~ 467 (539)
T PF03137_consen 388 VILYSPLFFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSFFTFM 467 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHeecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHHHHHHh
Confidence 322 11110 00 00111122 25677777 55666666666665555555
Q ss_pred CccchhhhhhccccCCCcccccccceehhhhHHHH-hhhhHHHhhhhhhcccc
Q 045562 167 HKPCVQAFGADQFDSQHPLESKLKSSFFNWWYFGM-CMGTFVTLTVLNYIQDN 218 (525)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~-~~g~~~gp~~~~~l~~~ 218 (525)
.........-+.+|+++ |+.+.|+..... .+|.+-||++-|.+.|.
T Consensus 468 ~~~p~~~i~LR~V~~~~------rs~AlGv~~~~~rllg~IPgPIifG~iiD~ 514 (539)
T PF03137_consen 468 SQVPSTLITLRCVPPEQ------RSFALGVQWLIIRLLGFIPGPIIFGAIIDS 514 (539)
T ss_dssp -----------------------------------------------------
T ss_pred cccchheeeeccCChhh------cchhhhHHHHHHHhhcCcchHHHHhHHHhh
Confidence 55555566678999998 999999966655 68889999999999885
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.01 Score=64.91 Aligned_cols=99 Identities=15% Similarity=0.076 Sum_probs=76.1
Q ss_pred hhhhhhhhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCcCCCCCCccchHHHHHHHHHHHHHHHHHH
Q 045562 393 FVPIARTFTRKPAGITMLQRIGTGMFLSAASMTGATLVEMKRLKTAEEYGLVDKPNVTIPMSVWWLIPQYALLGVSEAFT 472 (525)
Q Consensus 393 ~~~l~~r~~~~~~~~~~~~~i~ig~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~ 472 (525)
..++.||+++| +.+.+|.++++++.++.++... + ....+.+.+.+..++.|+|++..
T Consensus 81 ~G~L~Dr~G~R-------~vllig~ll~~iG~ll~ala~~---------~-------~i~~s~~~l~l~r~l~G~G~~~~ 137 (591)
T PTZ00207 81 YSFIYDYLGPR-------PIFVLSMTVFCLGTLLFALTFQ---------E-------VIEGSVVRLSVYNGLMTLGCMLF 137 (591)
T ss_pred HHHHHHHhCcH-------HHHHHHHHHHHHHHHHHHHHhc---------c-------cccCcHHHHHHHHHHHHHHHHHH
Confidence 34478886554 8899999999999988887421 0 00136788888889999999999
Q ss_pred hhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHH-HHHHHHHhh
Q 045562 473 MVGLQEFFYDQVPTELRSVGLSLYLSIFGVGSFL-SSFLISAIE 515 (525)
Q Consensus 473 ~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~l-g~~~~~~i~ 515 (525)
.+.....+.+..| +.||++.|+.....++|+.+ ++...+++.
T Consensus 138 ~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~ 180 (591)
T PTZ00207 138 DLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFS 180 (591)
T ss_pred HHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8988889999887 67999999999999999975 555544443
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0038 Score=64.53 Aligned_cols=184 Identities=12% Similarity=0.047 Sum_probs=112.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHHHH
Q 045562 41 SALFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVLG 120 (525)
Q Consensus 41 ~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~~~ 120 (525)
+...++++.......+|+....+-.-+ ..-|++...+|.......++..++..+.|.++||...-|++++.......++
T Consensus 267 ~F~il~~~ygi~~g~F~~l~~~l~~~l-~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~ 345 (480)
T KOG2563|consen 267 QFIILAICYGIGLGLFNSLSTLLNLAL-CPSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVG 345 (480)
T ss_pred cHHHHHHHHhhhHHHHHHHHHHhhhcc-ccccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHH
Confidence 445555555555555555554443333 4568888888998888899999999999999999955566666655555555
Q ss_pred HHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccc-cCCCcccccccceehhhhHH
Q 045562 121 LGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQF-DSQHPLESKLKSSFFNWWYF 199 (525)
Q Consensus 121 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~-~~~~~~~~~~r~~~~~~~~~ 199 (525)
. ++... |+-.+...+.++....++|++..+..|...-+..|.. |..| +.-.|..+.
T Consensus 346 ~-~~l~~---------------~t~~~~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E-------~tSsGll~~ 402 (480)
T KOG2563|consen 346 T-LMLLT---------------CTLFLGDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAE-------GTSSGLLNL 402 (480)
T ss_pred H-HHHHH---------------hhccCCceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCC-------cccceeEEe
Confidence 3 22211 1222223455667777888888888898888888885 5444 444555555
Q ss_pred HHhhhhHHHhhhhhhcccccc----hhhhHHHHHHHHHHHHHHHHhcccceee
Q 045562 200 GMCMGTFVTLTVLNYIQDNLN----WILGFGIPCILMVIALVVFLLGTKIYRY 248 (525)
Q Consensus 200 ~~~~g~~~gp~~~~~l~~~~g----~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 248 (525)
..++-+++=..+.+...+..+ +...-+......++...+..+.+++++.
T Consensus 403 ~gq~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~lva~~r~~y~R 455 (480)
T KOG2563|consen 403 SGQIFGVILVFIMGILAEDLGPPGNTFPANIFLTVSALLGAILVAFFRPDYRR 455 (480)
T ss_pred ehhHHHHHHHHHHHHHhhccCCCCCCccchhHhHHHHHHHHHHHhhhhhhHHh
Confidence 555555555566666666665 3333333333344444555555554443
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.002 Score=68.05 Aligned_cols=201 Identities=11% Similarity=0.127 Sum_probs=119.0
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHH--HHhhhhhHHHHhhhc--cchHHHHHHH
Q 045562 38 GWRSALFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGV--ASLLPLFGAFLADSF--LGRYRAIIIA 113 (525)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~--~~~~~~~~G~lsD~~--~Grr~~~~~~ 113 (525)
.++..+++++..+..++.+..+....+.+....++++..++-...+..... .....+...+..-|. ..+|+.+..+
T Consensus 260 d~~~~~vc~~~~~~~~~~~~~iet~~~~~~m~~y~w~~~~av~~~gi~~~~~g~ls~~~~l~~~f~~l~~i~~r~~~~~g 339 (488)
T KOG2325|consen 260 DWVAVLVCIFLRFVVNFIATTIETLSSALTMVMYGWTGSEAVLYNGITLSISGILSVILLLLYIFTRLGKIDKRRIILLG 339 (488)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHhccccchHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhhccceeeeeh
Confidence 356778888888888888888788777777778888877765544443222 122223333333333 0235555555
Q ss_pred HHHHHHHHHHHHHhhhhccCCCCccC--CCCcCCCch--------hH-HHHHHH-HHHHHhccccCccchhhhhhccccC
Q 045562 114 SLIYVLGLGLLTLSAVLLSGSTSECQ--NTSCSANQF--------QV-IFFFFS-LYLIALGQGGHKPCVQAFGADQFDS 181 (525)
Q Consensus 114 ~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~--------~~-~~~~~~-~~l~g~g~g~~~~~~~~~~~~~~~~ 181 (525)
.++......+........+...+.+. .+.|-.... .. +.+++. .++.|.+.-.......++-+++..+
T Consensus 340 ~l~~f~~~~i~~yp~~~~s~pv~~~~~~~~~~~~~~y~wc~~~~~v~~~~~l~~~i~~~g~~~P~~~~~~~tlySkiLgp 419 (488)
T KOG2325|consen 340 FLIFFLSYYIFTYPWGFYSGPVQPYNTTYAGCDFEEYSWCDTTTAVPLILYLISFIVVFGIAFPFISTALDTLYSKILGP 419 (488)
T ss_pred HHHHHHhhheeeeeccccccccccccccccCcCcccchhhccCcccChhhheeehhheeccccccccchHHHHHHHHhCC
Confidence 33333333222221111111111111 223333222 22 222333 2234555555555678888999988
Q ss_pred CCcccccccceehhhhHHHHhhhhHHHhhhhhhcccccchhhhHHHHHHHHHHHHHHHHhccc
Q 045562 182 QHPLESKLKSSFFNWWYFGMCMGTFVTLTVLNYIQDNLNWILGFGIPCILMVIALVVFLLGTK 244 (525)
Q Consensus 182 ~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~ 244 (525)
.+ .+...+.+......+..+||++...+....|.++...+.++..++....+....+
T Consensus 420 ~~------q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~g~~~v~~~~~~~~l~~~~l~~~~~~ 476 (488)
T KOG2325|consen 420 RD------QGTMQGVFSISGSIARVVGPIFSTAIFTLSGPRPVWIILLCLLLVVAALWIVFLK 476 (488)
T ss_pred cc------ccceeEEEEeccchhhhhhHHHHhhhHHhcCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 87 7899999999999999999999999998899998888777666655544444333
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0081 Score=47.79 Aligned_cols=74 Identities=15% Similarity=0.014 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhh
Q 045562 54 FAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVLGLGLLTLSAV 129 (525)
Q Consensus 54 ~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~~~~~l~~~~~~ 129 (525)
++-+.+.+.+|. ++++.++|.++.+++.++..+++.++.+...++.++. .+++.+..+++...+....+++.++
T Consensus 6 igRFayTplLP~-M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ma~~~~ 79 (85)
T PF06779_consen 6 IGRFAYTPLLPL-MQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHS-RPRRLLRAGLLLTVLSTAAMALTHS 79 (85)
T ss_pred hHHHHHHhHhHH-HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445556777775 5668999999999999999999999999999999987 8899999999999999888888754
|
Note that many members are hypothetical proteins. |
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0066 Score=65.83 Aligned_cols=107 Identities=18% Similarity=0.165 Sum_probs=86.8
Q ss_pred HHHHHHHHhhhhhhhhhhhhhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCcCCCCCCccchHHHHH
Q 045562 380 LAIVLTIPIYDRIFVPIARTFTRKPAGITMLQRIGTGMFLSAASMTGATLVEMKRLKTAEEYGLVDKPNVTIPMSVWWLI 459 (525)
Q Consensus 380 ~~~i~~~~l~~~~~~~l~~r~~~~~~~~~~~~~i~ig~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~ 459 (525)
.+..++..+...++.++.||+||| +.+.+++++..+.-+..++. .+++...
T Consensus 125 s~~~~G~~vG~~i~g~lsD~~GRk-------~~~~~~~~~~~i~~~~~a~a----------------------~~~~~~~ 175 (521)
T KOG0255|consen 125 SLFFLGVLVGSLIFGPLSDRFGRK-------PVLLVSLLLFIIFGILTAFA----------------------PNYWMFL 175 (521)
T ss_pred HHHHHHHHHHHhhheehHhhcccH-------HHHHHHHHHHHHHHHHHHHh----------------------CcHHHHH
Confidence 333444444555566789998877 77888888888877777763 5889999
Q ss_pred HHHHHHHHHHHHHhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 045562 460 PQYALLGVSEAFTMVGLQEFFYDQVPTELRSVGLSLYLSIFGVGSFLSSFLISAIEN 516 (525)
Q Consensus 460 ~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~~~~~~i~~ 516 (525)
+.-++.|++..........+..|..+++.|+.+..+ ......++.+++...+++..
T Consensus 176 ~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~ 231 (521)
T KOG0255|consen 176 IFRFLSGFFGSGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR 231 (521)
T ss_pred HHHHHHHhhccchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999 77778888888888777665
|
|
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.022 Score=62.92 Aligned_cols=170 Identities=15% Similarity=0.137 Sum_probs=114.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHH-HHHhhhhhHHHHhhhc-cchHHHHHHHHHHHHH
Q 045562 42 ALFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSG-VASLLPLFGAFLADSF-LGRYRAIIIASLIYVL 119 (525)
Q Consensus 42 ~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~-~~~~~~~~~G~lsD~~-~Grr~~~~~~~~~~~~ 119 (525)
..+..+...++...+-++.+++|-||.+.+|.+...+..+.+...+ +..++.+++|++..|+ ++-|.+..+.++...+
T Consensus 394 f~~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~~~~~l 473 (735)
T KOG3626|consen 394 FMLVVLASVIESLAITGYITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFVIVCSVL 473 (735)
T ss_pred HHHHHHHHHHHHHHHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHHHHHHHHH
Confidence 3455677788889999999999999999999999999988876655 5668889999999988 3445555444444333
Q ss_pred HHHH---HHHhh--------------hhccCCC--------------------CccC-----------------------
Q 045562 120 GLGL---LTLSA--------------VLLSGST--------------------SECQ----------------------- 139 (525)
Q Consensus 120 ~~~l---~~~~~--------------~~~~~~~--------------------~~~~----------------------- 139 (525)
..+. ..+.. ..+.... |-|+
T Consensus 474 ~l~~~~~~~~igC~~~~~aG~~~~y~~~~~~~~~~~~~s~Cn~~C~C~~~~~~PVCg~~G~tY~SpChAGC~~~~~~~~~ 553 (735)
T KOG3626|consen 474 SLLFYSLLFFIGCESSPVAGVTNSYEGSPAFTSHENPFSSCNSDCSCDTSEYEPVCGENGITYFSPCHAGCTESSGTSDG 553 (735)
T ss_pred HHHHHHHHHEecCCCCcccceecCCCCCCccccCCCchhhhhcCCCCCCcCcCcccCCCCCEEeChhhhCCcccccCCCC
Confidence 3333 22110 0000111 1111
Q ss_pred -----CC----------------CcCCC-chhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhh
Q 045562 140 -----NT----------------SCSAN-QFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWW 197 (525)
Q Consensus 140 -----~~----------------~~~~~-~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 197 (525)
+- .|..+ +..+..+++..++..+..+...+..+.++-+.+|+++ |.-++|+.
T Consensus 554 ~~~ytnCsCv~~~~~~~~~a~~G~C~~~c~~~~~~Fl~~~~~~sf~~~~~~~p~~~i~LR~V~~e~------ks~AlG~~ 627 (735)
T KOG3626|consen 554 NTIYTNCSCVPTNKNGNGSAKKGYCPNDCCRQFLIFLALFAIGSFIGALGAVPGMLIVLRCVPPEE------KSFALGFQ 627 (735)
T ss_pred ceeeccccccccccCCCceeecCCCCCCcchhhHHHHHHHHHHHHHHHhccCcceEEEEEccCchh------chhhhHHH
Confidence 22 33334 4455555555555555555555666777789999999 99999996
Q ss_pred HHHH-hhhhHHHhhhhhhccc
Q 045562 198 YFGM-CMGTFVTLTVLNYIQD 217 (525)
Q Consensus 198 ~~~~-~~g~~~gp~~~~~l~~ 217 (525)
.+.. .+|.+-+|++-|++.|
T Consensus 628 ~~~irllg~IPsPIifG~~ID 648 (735)
T KOG3626|consen 628 WMLIRLLGFIPSPIIFGAVID 648 (735)
T ss_pred HHHHHHHhcCCchHhhhhhHh
Confidence 6555 6899999999999876
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.038 Score=59.86 Aligned_cols=173 Identities=13% Similarity=0.031 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHH-HHHHHH-HHHHHHHH
Q 045562 48 VEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAII-IASLIY-VLGLGLLT 125 (525)
Q Consensus 48 ~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~-~~~~~~-~~~~~l~~ 125 (525)
..|...++...+-....-.+.-.+|.+....+.+++++..+..++..++|++.++. -|+...+ ++..+. .++..++.
T Consensus 22 ~~f~sg~~~L~yEv~~~r~l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~-~~~~~~~e~~i~l~~~~~~~ll~ 100 (521)
T PRK03612 22 AVFVCAACGLVYELLLGTLASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDA-AAGFVAVELLLALLGGLSALILY 100 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444455556788888889999999999999998888887543 3332221 111111 11111111
Q ss_pred HhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhhHHHHhhhh
Q 045562 126 LSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWYFGMCMGT 205 (525)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~ 205 (525)
.... .. . .....++...++.++..|+..|....+..+... ++ -++..|..|....+|+
T Consensus 101 ~~~~-~~--~------------~~~~~~~~~~~~~~~l~G~~~Pl~~~~~~~~~~-~~------~g~~~g~ly~~ntlGa 158 (521)
T PRK03612 101 AAFA-FQ--G------------LSRLLLYVLVLLIGLLIGMEIPLLMRILQRIRD-QH------LGHNVATVLAADYLGA 158 (521)
T ss_pred HHHH-HH--H------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cc------hhhhhhhhHhHHhHHH
Confidence 1111 00 0 001222333445667777766665555543222 12 3566777888888888
Q ss_pred HHHhhhhhhc-ccccch-hhhHHHHHHHHHHHHHHHHhcc
Q 045562 206 FVTLTVLNYI-QDNLNW-ILGFGIPCILMVIALVVFLLGT 243 (525)
Q Consensus 206 ~~gp~~~~~l-~~~~g~-~~~f~~~~~~~~~~~~~~~~~~ 243 (525)
++|.++.+++ ...+|- +..+.+..+..+++++.++..+
T Consensus 159 ~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a~~~~~~~~ 198 (521)
T PRK03612 159 LVGGLAFPFLLLPRLGLIRTAALTGSLNLLAALVFLWLFR 198 (521)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888864 446774 4444444444444544444433
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.49 Score=52.69 Aligned_cols=315 Identities=9% Similarity=-0.089 Sum_probs=188.4
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHH
Q 045562 77 TAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVLGLGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFS 156 (525)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (525)
........+.....+.++.....+|-.-++-..+..-.+..++..+...+... .. .+...........
T Consensus 21 ~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai-~a-----------~~~~~~~~~~~~~ 88 (654)
T TIGR00926 21 SESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSF-GA-----------IPSSGHPLHDLLD 88 (654)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh-cc-----------CcccccchHHHHH
Confidence 44556677788888888999999998866666666666666666666655543 00 0111112334556
Q ss_pred HHHHHhccccCccchhhhhhccccCCCcccccccceehhhhHHHHhhhhHHHhhhhhhcccccc-hhh-------hHHHH
Q 045562 157 LYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWYFGMCMGTFVTLTVLNYIQDNLN-WIL-------GFGIP 228 (525)
Q Consensus 157 ~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l~~~~g-~~~-------~f~~~ 228 (525)
.+.+.++.++..+.-+.+.+++.++.+ ...+.+..+++++....+.+ |.+++..+..... +.. -++..
T Consensus 89 l~gLaLia~G~GgiKp~vsaf~gdqf~---~~~~~~~~s~F~~fY~~iNi-GSlis~~i~~~l~~~~~~fg~~~~~~~aF 164 (654)
T TIGR00926 89 LLGLALIALGTGGIKPCVSAFGGDQFE---ERQLSLRSRFFSFFYFAINA-GSLISTIITPILRGDVGCFGCQDCYPLAF 164 (654)
T ss_pred HHHHHHHHhhccccccCchhhhHhhcC---ccchhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhcccccCcchHHHH
Confidence 667888999999999999999999765 23344678888888877776 4566666665443 321 22344
Q ss_pred HHHHHHHHHHHHhcccceeecCCCCCCchhhhHHHHHHHHHhccccCCchhhhHhhhhCCCCCCCccchhhhhHHHhhcC
Q 045562 229 CILMVIALVVFLLGTKIYRYSLKGEEKSPFLRIGQVFVTAVRNWRITPSAIALEEEARGTLPHQSSEQFKFLNKALLASN 308 (525)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (525)
++..++.++.++.....++..++.+ .+.....++........+ ........
T Consensus 165 ~i~~i~m~ia~lvf~~g~k~y~~~~--p~gs~l~~v~~vi~~a~~---------------------------~~~~~~~~ 215 (654)
T TIGR00926 165 GVPAILMILALIVFMAGSKMYKKKP--PKGNIVSKVIKCIVTALR---------------------------KRFSTRSE 215 (654)
T ss_pred HHHHHHHHHHHHHHHHhccccCCCC--CCccHHHHHHHHHHHHHH---------------------------HhhccCCc
Confidence 4555555556666655444333322 221111222111111000 00000000
Q ss_pred CCCCCCcccc--hhhHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhccccCcccccccChhhhhhhhhHHHHHHH
Q 045562 309 GSKGYGKVCS--VGEVEEAKALLRLVPIWTTCLVYAIVFAQSSTFFTKQGVTMDRSVVADFQIPAASLQSFISLAIVLTI 386 (525)
Q Consensus 309 ~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 386 (525)
..+..|.+.. +......+...+.+.++...+.+++.+.++......+..+++...+. ....+.....++.+-.++..
T Consensus 216 ~~~~~~ld~a~~~~~~~~V~evkrll~il~l~i~~~ifw~~~~Q~~s~~~~qa~~m~~~-l~g~~ip~~~lq~~n~L~II 294 (654)
T TIGR00926 216 HWPLHWLDYAKDKHDIRMIRSTKRLLRVLVLFIPLPMFWALFDQQGSRWTLQATRMDGD-VGGFEIQPDQMQVVNPLLIL 294 (654)
T ss_pred ccchhHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHhcCc-cCCEecCHHHHHHHHHHHHH
Confidence 0011121111 11122346677788888888888888888777777777667653332 32233345677788888888
Q ss_pred HhhhhhhhhhhhhhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 045562 387 PIYDRIFVPIARTFTRKPAGITMLQRIGTGMFLSAASMTGATLVEMKRLKTAEE 440 (525)
Q Consensus 387 ~l~~~~~~~l~~r~~~~~~~~~~~~~i~ig~~l~~i~~~~~~~~~~~~~~~~~~ 440 (525)
++...+..++.+++.++ ..+.+.+.-+.+.+.++.+.+.+++....+..+.
T Consensus 295 il~Pi~~~~lyp~l~~~---~~~ls~l~k~~iG~~la~la~~va~~ve~~~~~~ 345 (654)
T TIGR00926 295 IFVPIFDYIVYPAIAKC---GTRFTSLRKMAVGGLLAALSFFVAALVQLKVNPT 345 (654)
T ss_pred HhHHHHHHhHHHHHHhc---CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 88888777888888765 5577788889999999999888887654444333
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.29 Score=43.96 Aligned_cols=85 Identities=15% Similarity=0.145 Sum_probs=69.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCcCCCCCCccchHHHHHHHHHHHHHHHHHHhhhhHHHhhhccCchh
Q 045562 409 MLQRIGTGMFLSAASMTGATLVEMKRLKTAEEYGLVDKPNVTIPMSVWWLIPQYALLGVSEAFTMVGLQEFFYDQVPTEL 488 (525)
Q Consensus 409 ~~~~i~ig~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~ 488 (525)
+++.+.+|.+...+-.....+ .+.+.+.+.-++.|++.+......-.++.+...++.
T Consensus 66 ~K~sm~lg~~~y~~y~~~~~~-----------------------~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~ 122 (156)
T PF05978_consen 66 PKWSMILGSLGYAIYIASFFY-----------------------PNSYTLYPASALLGFGAALLWTAQGTYLTSYSTEET 122 (156)
T ss_pred hHHHHHHHHHHHHHHHHHHHh-----------------------hhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCHHH
Confidence 336777777776655444433 366788888899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 045562 489 RSVGLSLYLSIFGVGSFLSSFLISAIEN 516 (525)
Q Consensus 489 rg~~~gi~~~~~~lg~~lg~~~~~~i~~ 516 (525)
+++..|++......+.++|+.+.-.+..
T Consensus 123 ~~~~~~ifw~i~~~s~i~G~~~~~~~~~ 150 (156)
T PF05978_consen 123 IGRNTGIFWAIFQSSLIFGNLFLFFIFQ 150 (156)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999888766643
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=95.49 E-value=2.6 Score=45.18 Aligned_cols=167 Identities=13% Similarity=0.054 Sum_probs=87.8
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhcccc---CCChHHHHHHHHHHHH-HHHhhhhhHHHHhhhccchHHHHHHHH
Q 045562 39 WRSALFIIGVEMAERFAYYGVSSNLITYLTGPL---AQSTATAAENVNAWSG-VASLLPLFGAFLADSFLGRYRAIIIAS 114 (525)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~l---g~s~~~~~~~~~~~~~-~~~~~~~~~G~lsD~~~Grr~~~~~~~ 114 (525)
++..+.+.+..|+..+.+- +. --+.|.+ ...+..+..+-....+ +..+...+-.+++|++ +|.+++.+..
T Consensus 23 ~~k~~~l~~m~f~i~f~y~-~l----R~~KD~lvvt~~gae~I~flK~~~vlP~a~~f~~~y~kl~n~~-s~~~lFy~~~ 96 (491)
T PF03219_consen 23 LKKFLPLALMFFFILFNYT-IL----RDLKDTLVVTAQGAEVIPFLKVWGVLPVAILFTILYSKLSNRL-SREKLFYIII 96 (491)
T ss_pred HHHHHHHHHHHHHHHHHHH-HH----HHhcCeEEEecCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHHHHHHH
Confidence 4556666665555544442 22 1123332 1133344444332322 4556677789999998 9999988776
Q ss_pred HHHHHHHHHHHHhhhh--ccCCCCccCCCCcCCCchhH---------HHHHHHHHHHHhccccCcc-chhhhhhccccCC
Q 045562 115 LIYVLGLGLLTLSAVL--LSGSTSECQNTSCSANQFQV---------IFFFFSLYLIALGQGGHKP-CVQAFGADQFDSQ 182 (525)
Q Consensus 115 ~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~l~g~g~g~~~~-~~~~~~~~~~~~~ 182 (525)
..+.....++++.--+ ...+.+.-.+......+..+ |.+.+.-++.-+-.....+ .-++++.|.++.+
T Consensus 97 ~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~~ 176 (491)
T PF03219_consen 97 IPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTVE 176 (491)
T ss_pred HHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Confidence 6666555555543110 01110000000000000001 1010111111111111122 3488899999988
Q ss_pred CcccccccceehhhhHHHHhhhhHHHhhhhhhccc
Q 045562 183 HPLESKLKSSFFNWWYFGMCMGTFVTLTVLNYIQD 217 (525)
Q Consensus 183 ~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l~~ 217 (525)
| -.|.++.+..+.|+|.+++..+..++.+
T Consensus 177 e------AKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 177 E------AKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred H------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8 8999999999999999999888887766
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=95.09 E-value=0.23 Score=52.30 Aligned_cols=137 Identities=10% Similarity=0.019 Sum_probs=101.1
Q ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhccCCCCc
Q 045562 58 GVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVLGLGLLTLSAVLLSGSTSE 137 (525)
Q Consensus 58 ~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 137 (525)
+.-+.+..|+... |+++...|..=+.-.+....+.+...++.+|+ |..|.=.+++..-..+..++..+-..+..
T Consensus 276 sf~~lmt~yl~~~-G~s~~~igi~R~~gav~Gl~gT~~~p~l~~ri-Glvr~G~~~l~~q~~~L~~~v~~~~~~~~---- 349 (432)
T PF06963_consen 276 SFGGLMTAYLKSQ-GYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRI-GLVRAGLWSLWWQWVCLALCVVSFWAPGS---- 349 (432)
T ss_pred cCcHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchhhHHHHHHHHHHHHHHHHHHHhcCCC----
Confidence 3445677888855 99999999999999999999999999999999 98888888877655544444433221111
Q ss_pred cCCCCcCC-CchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhhHHHHhhhhHHHhhhhh
Q 045562 138 CQNTSCSA-NQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWYFGMCMGTFVTLTVLN 213 (525)
Q Consensus 138 ~~~~~~~~-~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~ 213 (525)
+ ...+...++.+..+-=+|.=++--+...++-|.+|+++ |+...+..+...++...+-....-
T Consensus 350 -------~~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~------Rg~v~gvq~sl~~lf~ll~~~~~i 413 (432)
T PF06963_consen 350 -------PFSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESE------RGAVSGVQNSLQSLFELLSFVLTI 413 (432)
T ss_pred -------CchhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHH------hhHHHHHHHHHHHHHHHHHHHHHh
Confidence 0 11334556666666667777778888999999999998 999999988888888877654443
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.64 E-value=0.16 Score=52.84 Aligned_cols=129 Identities=19% Similarity=0.135 Sum_probs=97.0
Q ss_pred hhhhhhhhHHHHHHHHhhhhhhhhhhhhhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCcCCCCC-C
Q 045562 372 ASLQSFISLAIVLTIPIYDRIFVPIARTFTRKPAGITMLQRIGTGMFLSAASMTGATLVEMKRLKTAEEYGLVDKPNV-T 450 (525)
Q Consensus 372 ~~~~~~~~~~~i~~~~l~~~~~~~l~~r~~~~~~~~~~~~~i~ig~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~-~ 450 (525)
+.+..+-++..++.+|+.+...++.-.|+|||+ .-+.++..+.++++.+..+..+.-.. +.+++.. .
T Consensus 70 S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRR------PfI~~~s~~i~~~l~Lig~aaDig~~------lgd~~~~~~ 137 (498)
T KOG0637|consen 70 SIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRR------PFILAGSLLIAVSLFLIGYAADIGLL------LGDNERKPV 137 (498)
T ss_pred cccccccccccceeccccccccccccccccccc------chHHHhhHHHHHHHhhhhhHhhhhHH------hcCCccccc
Confidence 446677789999999999999888889998884 45788888888888888876544221 2222221 1
Q ss_pred ccchHHHHHHHHHHHHHHHHHHhhhhHHHhhhccCchhHHH-HHHHHHHHHHHHHHHHHHHHH
Q 045562 451 IPMSVWWLIPQYALLGVSEAFTMVGLQEFFYDQVPTELRSV-GLSLYLSIFGVGSFLSSFLIS 512 (525)
Q Consensus 451 ~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~-~~gi~~~~~~lg~~lg~~~~~ 512 (525)
-+......++.+.+.-++-.....+.-++..+.+-.+.+-+ +.+.+.++..+|+.+|=.+.+
T Consensus 138 ~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~ 200 (498)
T KOG0637|consen 138 KPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGS 200 (498)
T ss_pred chHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeeccc
Confidence 12345555666777788887888888999999998888888 999999999999998866654
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=94.22 E-value=0.22 Score=51.74 Aligned_cols=61 Identities=7% Similarity=0.004 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhhHHHHhhhhHHHhhhhhhcc
Q 045562 150 VIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWYFGMCMGTFVTLTVLNYIQ 216 (525)
Q Consensus 150 ~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l~ 216 (525)
.+..++..+..|+..|..+......+.|..|+++ |..+++...++-.+|..++..++-++.
T Consensus 335 i~ivf~lif~eGLlGGa~YVNtF~~I~~~~~~~~------REFslg~vsvsds~GI~lAgll~l~le 395 (402)
T PF02487_consen 335 IWIVFVLIFYEGLLGGASYVNTFYRISEEVPPED------REFSLGAVSVSDSLGILLAGLLGLPLE 395 (402)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCHHH------HHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 5667777788899999999999999999999888 999999999999999988877776553
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.76 E-value=0.96 Score=47.89 Aligned_cols=139 Identities=17% Similarity=0.150 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHHhhhhhHHHHhhhccchH-------HHHHHHHHHHHHHHHHHHHhhhhccCCCCccCCCCcCCCchhHH
Q 045562 79 AENVNAWSGVASLLPLFGAFLADSFLGRY-------RAIIIASLIYVLGLGLLTLSAVLLSGSTSECQNTSCSANQFQVI 151 (525)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~G~lsD~~~Grr-------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (525)
.+..+...+.-.+..|+..++--+. +++ .-+-+++.++..+.+++......... + +...+.+
T Consensus 327 ~~fQslNp~~Iii~~pI~a~l~~~l-~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~--~--------~~~~s~~ 395 (498)
T COG3104 327 AWFQSLNPFFIILFSPILAALWTKL-GRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFGG--P--------SGLVSVW 395 (498)
T ss_pred HHHHhhCHHHHHHHHHHHHHHHhHh-hcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcC--C--------CCCcCHH
Confidence 3555555666666677777766664 333 12344555566666555544110000 0 1113478
Q ss_pred HHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhhHHHHhhhhHHHhhhhhh------cccccchhhhH
Q 045562 152 FFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWYFGMCMGTFVTLTVLNY------IQDNLNWILGF 225 (525)
Q Consensus 152 ~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~------l~~~~g~~~~f 225 (525)
+++...+++.+|.=+..|...++++...|+.- .+..++.+......|..++..+.+. ..+.......|
T Consensus 396 ~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~------~s~~ma~wfLt~a~~~~l~g~va~~~~~~~~~~~~~~~~~~F 469 (498)
T COG3104 396 WLVLSYVLQSFGELFISPVGLSMVTKLAPPAL------KSFIMAMWFLTVAAGQTLGGQVAGLTAVTDPAYTAFIEGRVF 469 (498)
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHhChHHH------HHHHHHHHHHHHHHHHHhhceecccccccchhhhhhhhhhhH
Confidence 88999999999999999999999999999887 8999999999999998888777773 23334455566
Q ss_pred HHHHHHHHH
Q 045562 226 GIPCILMVI 234 (525)
Q Consensus 226 ~~~~~~~~~ 234 (525)
...+...++
T Consensus 470 ~~~g~v~i~ 478 (498)
T COG3104 470 GTIGVVAIV 478 (498)
T ss_pred HHHHHHHHH
Confidence 655544433
|
|
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=93.54 E-value=0.2 Score=53.01 Aligned_cols=153 Identities=12% Similarity=-0.007 Sum_probs=85.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhccc----cCCChH-HHHHHHHHHHHHHHhhhhhHHHHhhhccchH-HHHHHH
Q 045562 40 RSALFIIGVEMAERFAYYGVSSNLITYLTGP----LAQSTA-TAAENVNAWSGVASLLPLFGAFLADSFLGRY-RAIIIA 113 (525)
Q Consensus 40 ~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~----lg~s~~-~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr-~~~~~~ 113 (525)
|++|...+..++..+... ..+|.+..+. .+.+.. ..-.....+.++..+++.+..+.. +.++| +.+.+.
T Consensus 269 kki~~~~~~vf~~F~vTL---~vFPgv~~~i~~~~~~~~~~~~~~i~~~~fNvgD~vGR~~~~~~~--~p~~~~~~l~i~ 343 (437)
T TIGR00939 269 TKVWLLAFSVVFVFTVTL---SVFPAITTAVTSSGLGLSNWFYPIICFLLFNLFDWLGRSLTSKFM--WPDEDSRWLPIL 343 (437)
T ss_pred HHHHHHHHHHHHHHHHHH---HhcCceEEEeeccCCCCCccHHHHHHHHHHHHHHHHHhhhhheeE--eeCCCccchHHH
Confidence 455555555555444443 3444443221 122332 444666778888888887665431 11222 133334
Q ss_pred HHHHHHHHHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCccccccccee
Q 045562 114 SLIYVLGLGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSF 193 (525)
Q Consensus 114 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 193 (525)
.+.-.+-..++.+.+..+..+.| ..=.+.+..++..++.|+.+|-.......+..+..++++ |..+
T Consensus 344 s~~R~iFIPlf~lcn~~~~~~~p--------~~~~~d~~~~~~~~l~gltnGy~~s~~m~~~p~~v~~~e------~e~a 409 (437)
T TIGR00939 344 SFLRVLFIPLFLLCNYPQRSRLP--------VFFPGDAYFIILMLLFGFSNGYLGSLSMCLAPRQVDPHE------REVA 409 (437)
T ss_pred HHHHHHHHHHHHHhcCCccccCC--------eeecccHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCHHH------HHHH
Confidence 44434444444433221100000 000125667777889999999998888888999988776 7777
Q ss_pred hhhhHHHHhhhhHHHhhh
Q 045562 194 FNWWYFGMCMGTFVTLTV 211 (525)
Q Consensus 194 ~~~~~~~~~~g~~~gp~~ 211 (525)
-.+..++..+|-..|..+
T Consensus 410 G~~~~~~l~~Gl~~Gs~l 427 (437)
T TIGR00939 410 GALMVIFLLVGLALGAVL 427 (437)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 777777777777766544
|
|
| >KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.88 E-value=0.71 Score=46.59 Aligned_cols=155 Identities=13% Similarity=0.088 Sum_probs=85.6
Q ss_pred HHHHHHhc-cccCCChHHHH-HHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhccCCCCcc
Q 045562 61 SNLITYLT-GPLAQSTATAA-ENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVLGLGLLTLSAVLLSGSTSEC 138 (525)
Q Consensus 61 ~~l~~yl~-~~lg~s~~~~~-~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 138 (525)
|++..|+. .+.+++..+.. -+.-...-...+.-++.=.+.|-. ..|+++++-.+.....-.++-+..+
T Consensus 25 P~~tpyl~gp~~NlT~~~l~~evyPvwTYSYLv~LvpvFlLTD~l-rYKPvivlq~ls~v~~w~~lv~g~s--------- 94 (433)
T KOG3810|consen 25 PYLTPYLLGPDKNLTEDQLTNEVYPVWTYSYLVGLVPVFLLTDYL-RYKPVVVLQALSGVPVWIMLVFGPS--------- 94 (433)
T ss_pred CccchhccCCCCCccHHHHhcccccchhHHHHHHHHHHHHHhhhh-hcceeeeeeccchhHHHHHHHhcCC---------
Confidence 34555665 44566655543 222222333334444555689976 8888887665544444444443322
Q ss_pred CCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhhHHHHhhhhHHHhhhhhhccc-
Q 045562 139 QNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWYFGMCMGTFVTLTVLNYIQD- 217 (525)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l~~- 217 (525)
.+.+=+.-+..|...+.. .+.++++=+.+|+++ +.++.+..-.+.-.|-..|...+-.+..
T Consensus 95 -----------V~~mQvlE~FyG~~tAaE-IAYysYIYs~Vd~~~------Yqrvt~y~RaA~L~g~~~g~vlaQlLvs~ 156 (433)
T KOG3810|consen 95 -----------VKAMQVLEFFYGPATAAE-IAYYSYIYSKVDPEM------YKRVTGYCRAAFLVGKFVGSVLAQLLVSL 156 (433)
T ss_pred -----------chheeeehhhcChHHHHH-HhhhheeeeecCHHH------HHHHHHHhHHHHHHHhHHHhHHHHHHhhh
Confidence 333333334444444432 355677777778777 8888888777777777777666655543
Q ss_pred -ccchhhhHHHHHHHHHHHHHHHHhcc
Q 045562 218 -NLNWILGFGIPCILMVIALVVFLLGT 243 (525)
Q Consensus 218 -~~g~~~~f~~~~~~~~~~~~~~~~~~ 243 (525)
+.++...=.++.....++..+.+..+
T Consensus 157 ~~~sy~~LN~ISL~~~~ia~~~A~fLP 183 (433)
T KOG3810|consen 157 ETLSYTTLNYISLAEVTIAVLLALFLP 183 (433)
T ss_pred cccchhhhchhhHHHHHHHHHHHhhCC
Confidence 33444444455555555554444433
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=92.05 E-value=2.9 Score=40.00 Aligned_cols=64 Identities=16% Similarity=0.132 Sum_probs=51.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhHHHhhhccCc-hhHHHHHHHHHH-HHHHHHHHHHHHHHHhhhh
Q 045562 454 SVWWLIPQYALLGVSEAFTMVGLQEFFYDQVPT-ELRSVGLSLYLS-IFGVGSFLSSFLISAIENA 517 (525)
Q Consensus 454 ~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~-~~rg~~~gi~~~-~~~lg~~lg~~~~~~i~~~ 517 (525)
+.+.+....++.+++.+...+....++.+..|+ +.|+...+.... ...+|..+++.+.+.+...
T Consensus 93 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (338)
T COG0477 93 GLALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGA 158 (338)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666666668899989999999999999998 778999998888 5788888888777766554
|
|
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=91.82 E-value=20 Score=38.15 Aligned_cols=165 Identities=10% Similarity=0.065 Sum_probs=96.0
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCC---ChHHHHHHHHHHHH-HHHhhhhhHHHHhhhccchHHHHHHH
Q 045562 38 GWRSALFIIGVEMAERFAYYGVSSNLITYLTGPLAQ---STATAAENVNAWSG-VASLLPLFGAFLADSFLGRYRAIIIA 113 (525)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~---s~~~~~~~~~~~~~-~~~~~~~~~G~lsD~~~Grr~~~~~~ 113 (525)
.++.++.+.+..++-.+.++..-+ +.|.+.. .+..+.++-..... ++.+..++-+++.+++ .|.+++.+-
T Consensus 25 E~~kflpl~Ll~f~I~~ny~~lR~-----lKDslvv~~~gae~I~FlK~~~vlP~avif~~iy~kl~~~l-t~~~vF~~~ 98 (509)
T COG3202 25 ELKKFLPLALLFFCILFNYNLLRS-----LKDSLVVTRQGAESISFLKTWGVLPSAVIFTIIYQKLLNIL-TREKVFYII 98 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----hhhheEeecCcchhhHHHHHHHhchHHHHHHHHHHHHHhhc-CHHHHHHHH
Confidence 355666666666665555543322 3444433 34455555555555 6677888999999998 999999887
Q ss_pred HHHHHHHHHHHHHhhhhc-cCCCCc-cCCC-CcCCCc------------hhHHHHHHHHHHHHhccccCcc-chhhhhhc
Q 045562 114 SLIYVLGLGLLTLSAVLL-SGSTSE-CQNT-SCSANQ------------FQVIFFFFSLYLIALGQGGHKP-CVQAFGAD 177 (525)
Q Consensus 114 ~~~~~~~~~l~~~~~~~~-~~~~~~-~~~~-~~~~~~------------~~~~~~~~~~~l~g~g~g~~~~-~~~~~~~~ 177 (525)
...+....+++++.-.+. ...+|. .... .-+..+ |+...+++ +.-+-...... .-+.++.|
T Consensus 99 ~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~Yi---~aELWgslV~S~lFw~faNe 175 (509)
T COG3202 99 LGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLFYI---MAELWGSLVLSLLFWQFANE 175 (509)
T ss_pred HHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 777777777777653200 000000 0000 000000 11112221 11111111111 33677789
Q ss_pred cccCCCcccccccceehhhhHHHHhhhhHHHhhhhhhccc
Q 045562 178 QFDSQHPLESKLKSSFFNWWYFGMCMGTFVTLTVLNYIQD 217 (525)
Q Consensus 178 ~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l~~ 217 (525)
+++.+| -.|.++.++...|++..++..+..++.+
T Consensus 176 itt~~e------akRFy~lf~l~~ni~lllsg~~~~~~~k 209 (509)
T COG3202 176 ITTIEE------AKRFYPLFGLGANISLLLSGEVTSWLSK 209 (509)
T ss_pred hhhHHH------hhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999888 8999999999999999999888888766
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=91.21 E-value=2.4 Score=41.21 Aligned_cols=96 Identities=15% Similarity=0.103 Sum_probs=68.3
Q ss_pred hhhhhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCcCCCCCCccchHHHHHHHHHHHHHHHHHHhhh
Q 045562 396 IARTFTRKPAGITMLQRIGTGMFLSAASMTGATLVEMKRLKTAEEYGLVDKPNVTIPMSVWWLIPQYALLGVSEAFTMVG 475 (525)
Q Consensus 396 l~~r~~~~~~~~~~~~~i~ig~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~ 475 (525)
+.|+ ..++..+.+|.++..+++......-.. ...+.+.|.+.+..++.+.+....+..
T Consensus 59 l~d~-------~gp~~~l~iG~~~~~~GY~~~~l~~~~---------------~i~~~~~~~~~~~~~l~~~s~~~~~ta 116 (250)
T PF06813_consen 59 LYDR-------FGPWVVLLIGAVLGFVGYGLLWLAVSG---------------RIPSLPVWLMCLFLFLGGNSSCWFNTA 116 (250)
T ss_pred HHHh-------cchHHHHHHHHHHHHHHHHHHHHHHhC---------------ccCccchHHHHHHHHHHcccHHHhhhH
Confidence 6677 356677889999999998776654211 011246666766677777787777777
Q ss_pred hHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045562 476 LQEFFYDQVPTELRSVGLSLYLSIFGVGSFLSSFLISAI 514 (525)
Q Consensus 476 ~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~~~~~~i 514 (525)
......+..|+ .||.+.|+--...++++.+-..+...+
T Consensus 117 ~lvt~~~NFP~-~RG~vvgilk~~~GLSaai~t~i~~~~ 154 (250)
T PF06813_consen 117 SLVTCVRNFPR-SRGTVVGILKGFFGLSAAIFTQIYSAF 154 (250)
T ss_pred HHHHHHHhCcc-ccCceehhhhHHHHhHHHHHHHHHHHH
Confidence 77777788986 699999999988888877766554433
|
|
| >KOG3097 consensus Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.19 E-value=1.9 Score=43.30 Aligned_cols=149 Identities=13% Similarity=0.048 Sum_probs=83.5
Q ss_pred CccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHH
Q 045562 33 RSKYGGWRSALFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIII 112 (525)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~ 112 (525)
+..+...|+++.+....+....++ .-..++......++|.. .. +..........++.+.+..++ |-|.++.+
T Consensus 22 r~~~~~~knv~i~s~~fl~~f~a~-~gl~nlq~~vn~~lg~~--sl----~~~y~~l~~s~m~~~~~Ir~~-g~K~tm~l 93 (390)
T KOG3097|consen 22 RKRLGILKNVLILSIAFLLTFTAY-LGLQNLQTSVNYDLGTV--SL----GALYLSLIDSSMFMPLLIRFL-GTKWTMVL 93 (390)
T ss_pred ccccchhhhhhHHHHHHHHHHHHH-HHHHHHHHHHhcCcccc--hh----hhhhHHHHHHHHHHHHHHHHH-hhHHHHHH
Confidence 333455667776555544444444 34445555444333322 11 223334445555556777776 99999998
Q ss_pred HHHHHHHHHHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcc-----cc
Q 045562 113 ASLIYVLGLGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPL-----ES 187 (525)
Q Consensus 113 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~-----~~ 187 (525)
+...+..-...--. ..+..++.+-.+.|++.+..+.+--++++++-..+... +.
T Consensus 94 av~~Y~lyiA~Nl~---------------------pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g~~ya~~~~~q~~~ 152 (390)
T KOG3097|consen 94 AVFPYALYIAANLE---------------------PRYETLVPAGLVLGMAAGPIWASKGTYLTPMGQNYANQRGEQAGD 152 (390)
T ss_pred HHHHHHHHHHhhcc---------------------hhHHhhccHHHhhccccccccccCcceecHHHHHHHHhhhhhccC
Confidence 87655443222111 22567778888999999998888888877766543211 11
Q ss_pred cccceehhhhHHHHhhhhHHHhh
Q 045562 188 KLKSSFFNWWYFGMCMGTFVTLT 210 (525)
Q Consensus 188 ~~r~~~~~~~~~~~~~g~~~gp~ 210 (525)
.-+.+.++.+......+..+|..
T Consensus 153 ~~~~~ffg~Ffii~~~~qv~gn~ 175 (390)
T KOG3097|consen 153 GMKVRFFGEFFIIFQCAQVWGNL 175 (390)
T ss_pred ceeeeehhHHHHHHHHHHHHHHH
Confidence 11245566555555555554433
|
|
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.54 E-value=29 Score=36.15 Aligned_cols=58 Identities=24% Similarity=0.254 Sum_probs=44.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 045562 454 SVWWLIPQYALLGVSEAFTMVGLQEFFYDQVPTELRSVGLSLYLSIFGVGSFLSSFLI 511 (525)
Q Consensus 454 ~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~~~~ 511 (525)
+-+|.+....+.|+.-+=.......++.+.+|++++-.+..+..++...|-..|..+.
T Consensus 342 ~~~~~~~l~~~lglsnGYltsl~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~~s 399 (406)
T KOG1479|consen 342 SDGWFIFLMSLLGLSNGYLTSLIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSLLS 399 (406)
T ss_pred CchHHHHHHHHHHhccchHhhheehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 4566777778888887777777778888888888887777777777777777776654
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.54 E-value=4.2 Score=43.14 Aligned_cols=159 Identities=14% Similarity=0.063 Sum_probs=87.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcc--ccCCChHHH-HHHHHHHHHHHHhhhhhHHHHhhhc--cchHHHHHHHHH
Q 045562 41 SALFIIGVEMAERFAYYGVSSNLITYLTG--PLAQSTATA-AENVNAWSGVASLLPLFGAFLADSF--LGRYRAIIIASL 115 (525)
Q Consensus 41 ~~~~~~~~~~~~~~~~y~~~~~l~~yl~~--~lg~s~~~~-~~~~~~~~~~~~~~~~~~G~lsD~~--~Grr~~~~~~~~ 115 (525)
+++++....+..++..--..++.|..+.- .++.+.... +........+..++..+.+.+++|. .||++++.++..
T Consensus 241 ~ml~L~~~f~~tG~~~Sf~~~iypt~i~ft~~~~~n~~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~ 320 (461)
T KOG3098|consen 241 KMLLLFPFFFYTGLETSFWISIYPTCISFTRKLGSNTTYLIAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGII 320 (461)
T ss_pred hHHHHHHHHHHHHHHHHHHHhccchhhhhhhhccCcchhHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHH
Confidence 45545544444434333334455544432 333333322 2222223344445555555565443 289999999988
Q ss_pred HHHHHHHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehh
Q 045562 116 IYVLGLGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFN 195 (525)
Q Consensus 116 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 195 (525)
+..++.++.-+....+..-.++ ...=.-++++.....+.-+++|++-+......+.++++..|+ + |..+++
T Consensus 321 ~~~~~~~li~l~~p~dap~~~t--~~~~~~~~~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~~~-~------~~~~fs 391 (461)
T KOG3098|consen 321 IHLIGFLLIHLSFPNDAPLRPT--DSPPLLFTPSYYLALIIGFLLGFGDACFNTQRYVIIALLYPD-D------RAQAFS 391 (461)
T ss_pred HHHHHHHHHhccccccCCCCCC--cccccccccchhHHHHHHHHHhhHHHHHHHHHHHHHHHHhcC-c------hHHHHH
Confidence 8877777666554322211100 000011223345666667789999999999999999999954 4 677777
Q ss_pred hhHHHHhhhhHHH
Q 045562 196 WWYFGMCMGTFVT 208 (525)
Q Consensus 196 ~~~~~~~~g~~~g 208 (525)
++-.-..++..++
T Consensus 392 i~kfyq~~~s~v~ 404 (461)
T KOG3098|consen 392 LFKFYQSVASCVA 404 (461)
T ss_pred HHHHHHHHHHHHH
Confidence 7555555555444
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=89.47 E-value=2.5 Score=44.69 Aligned_cols=93 Identities=22% Similarity=0.217 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCcCCCCCCccchHHHHHHHHHHHHHHHHHHhhhhHHHhhhcc---Cch
Q 045562 411 QRIGTGMFLSAASMTGATLVEMKRLKTAEEYGLVDKPNVTIPMSVWWLIPQYALLGVSEAFTMVGLQEFFYDQV---PTE 487 (525)
Q Consensus 411 ~~i~ig~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~---P~~ 487 (525)
.-+.+|.++..++...++..... ..+.......+++..+|.++.....-+.+.|.+ |.+
T Consensus 60 ~Y~~i~~~~~~~~~~~~~~~~~~------------------~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~ 121 (433)
T PF03092_consen 60 PYMIIGWLLGAVSALVLALLPAS------------------ESSAAIAVVLLFLASFGYAFADVAADALVVELARREPES 121 (433)
T ss_pred HHHHHHHHHHHHHHHHHHhcccc------------------cchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCch
Confidence 55777777776666666654211 234555666777888888888888877777766 555
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCC
Q 045562 488 LRSVGLSLYLSIFGVGSFLSSFLISAIENATGGDG 522 (525)
Q Consensus 488 ~rg~~~gi~~~~~~lg~~lg~~~~~~i~~~~~~~g 522 (525)
||...+..+..+.+|++++..+.|.+.+..+..+
T Consensus 122 -~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~ 155 (433)
T PF03092_consen 122 -RGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQG 155 (433)
T ss_pred -hHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeE
Confidence 8889999999999999999999999888765543
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=89.26 E-value=33 Score=36.38 Aligned_cols=64 Identities=20% Similarity=0.097 Sum_probs=53.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 045562 454 SVWWLIPQYALLGVSEAFTMVGLQEFFYDQVPTELRSVGLSLYLSIFGVGSFLSSFLISAIENA 517 (525)
Q Consensus 454 ~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~~~~~~i~~~ 517 (525)
+-++.++..++.|+..+........+..+.+++++|-.+..+..++..+|-..|+.+.-.+...
T Consensus 371 ~d~~~~~~~~l~gltnGy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~~~~~~ 434 (437)
T TIGR00939 371 GDAYFIILMLLFGFSNGYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSFLFVAI 434 (437)
T ss_pred ccHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666678889999988888889999999999999999999999999999999886655543
|
|
| >PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs | Back alignment and domain information |
|---|
Probab=86.79 E-value=0.19 Score=50.65 Aligned_cols=116 Identities=11% Similarity=0.035 Sum_probs=3.7
Q ss_pred HHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhccCC-CCccCCCCcCCCchhHHHHHHHHHH
Q 045562 81 NVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVLGLGLLTLSAVLLSGS-TSECQNTSCSANQFQVIFFFFSLYL 159 (525)
Q Consensus 81 ~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l 159 (525)
....+.++..+++.+.++.-=+...+|++++ ..+.-.+...++.+.+..+..+ .+ ..=.+.+..++..++
T Consensus 187 ~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~-~s~~R~~fiPlf~~cn~~p~~~~~~--------~~~~~d~~~~i~~~l 257 (309)
T PF01733_consen 187 LFLLFNLGDFIGRFLASWPRWPGPSPRWLWI-LSLLRFLFIPLFLLCNVQPRPRYLP--------VLFNSDAWFIILMLL 257 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHhcchhcceeEecccccccHHH-HHHHHHHHHHHHHHHHhhcccccCC--------CcccchHHHHHHHHH
Confidence 4567888899999888874311102444444 3333333333333332111100 00 000124667777889
Q ss_pred HHhccccCccchhhhhhccccCCCcccccccceehhhhHHHHhhhhHHHhhh
Q 045562 160 IALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWYFGMCMGTFVTLTV 211 (525)
Q Consensus 160 ~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~ 211 (525)
+|+.+|-.......+..+..++++ |..+-.+..+...+|-.+|..+
T Consensus 258 ~g~TNGyl~tl~m~~~p~~v~~~e------~e~aG~~~~~~L~~Gl~~Gs~l 303 (309)
T PF01733_consen 258 FGFTNGYLSTLAMMYAPKSVSPEE------RELAGSVMSFFLSFGLFIGSVL 303 (309)
T ss_dssp ---------HHHH---------------------------------------
T ss_pred HHHccchhhhceeeeCCCcCCHHH------HHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999777 6666666666666666666443
|
Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A. |
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=85.30 E-value=2.8 Score=43.24 Aligned_cols=95 Identities=18% Similarity=0.170 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCcCCCCCCccchHHHHHHHHHHHHHHHHHHhhhhHHHhhhccCch---
Q 045562 411 QRIGTGMFLSAASMTGATLVEMKRLKTAEEYGLVDKPNVTIPMSVWWLIPQYALLGVSEAFTMVGLQEFFYDQVPTE--- 487 (525)
Q Consensus 411 ~~i~ig~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~--- 487 (525)
+.+.+|.++..++.+++...... +....+.+.+.+...+++.++|.+..=|....+..++.+++
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~-------------~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~ 68 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIP-------------PSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDS 68 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTS-------------SSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTT
T ss_pred HhhhHHHHHHHHHHHHhHHHHhc-------------chhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchh
Confidence 35777888888888875554210 00001234567888888999999999999999999999876
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 045562 488 LRSVGLSLYLSIFGVGSFLSSFLISAIENAT 518 (525)
Q Consensus 488 ~rg~~~gi~~~~~~lg~~lg~~~~~~i~~~~ 518 (525)
.|..+...+++..++|+.++..+.+++.+..
T Consensus 69 ~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~ 99 (372)
T PF00854_consen 69 RRDSFFNWFYWGINIGSLFSPTLVPYIQQNY 99 (372)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS
T ss_pred hhhhhHHHHHHHHhhhhHhhcccchhhcccc
Confidence 4666777889999999999998888777543
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=83.63 E-value=56 Score=33.46 Aligned_cols=103 Identities=17% Similarity=0.113 Sum_probs=65.4
Q ss_pred hhhhhhhhhhhhhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCcCCCCCCccchHHHHHHHHHHHHH
Q 045562 388 IYDRIFVPIARTFTRKPAGITMLQRIGTGMFLSAASMTGATLVEMKRLKTAEEYGLVDKPNVTIPMSVWWLIPQYALLGV 467 (525)
Q Consensus 388 l~~~~~~~l~~r~~~~~~~~~~~~~i~ig~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~l~g~ 467 (525)
+.+.+...+.||+||| +...+-.++.+++.+..- ..+.+.+++.-++.|+
T Consensus 84 i~g~~~G~laD~~Grk-------~~cl~~cily~~scl~k~-----------------------~~~~~~L~~GRvlgGi 133 (354)
T PF05631_consen 84 IFGTFVGSLADRYGRK-------KACLLFCILYSLSCLTKH-----------------------SSNYPVLLLGRVLGGI 133 (354)
T ss_pred HHHHHHHHHHHhcCch-------HHHHHHHHHHHHHHHHHh-----------------------ccccHHHHHHHHHHHH
Confidence 3333344588888876 555555555555554322 3467888888899999
Q ss_pred HHHHHhhhhHHHh-----hhccCchhHHHHHHHHH-HHHHHHHHHHHHHHHHhhhhccC
Q 045562 468 SEAFTMVGLQEFF-----YDQVPTELRSVGLSLYL-SIFGVGSFLSSFLISAIENATGG 520 (525)
Q Consensus 468 g~~~~~~~~~~~~-----~~~~P~~~rg~~~gi~~-~~~~lg~~lg~~~~~~i~~~~~~ 520 (525)
+..+.+..--+.. .+..|++..+...+... +.+.+-++.+..++.++.++.+.
T Consensus 134 aTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~ 192 (354)
T PF05631_consen 134 ATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGF 192 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCC
Confidence 8888776544433 34557666666665554 44566677777777777777654
|
|
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=81.86 E-value=79 Score=33.99 Aligned_cols=63 Identities=11% Similarity=0.104 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 045562 457 WLIPQYALLGVSEAFTMVGLQEFFYDQVPTELRSVGLSLYLSIFGVGSFLSSFLISAIENATG 519 (525)
Q Consensus 457 ~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~~~~~~i~~~~~ 519 (525)
.++..+++..+.....++...++-++++++..=|++|-+-|+..++|+..-..++-++.|.+.
T Consensus 407 lvI~~~~l~sf~stvmFVai~AFharISDP~IGGTYMTLLNTvSNLGGtWP~~~vL~lVD~fT 469 (544)
T PF13000_consen 407 LVIIQHVLSSFMSTVMFVAIMAFHARISDPAIGGTYMTLLNTVSNLGGTWPRTFVLWLVDYFT 469 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchHHHHHHHHHHhcCCCchHHHHHHHhhhcc
Confidence 355678888998889999999999999999999999999999999999988888887777664
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=81.62 E-value=13 Score=36.60 Aligned_cols=139 Identities=14% Similarity=0.070 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHhhhccchH--HHHHHHHHHHHHHHHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHH
Q 045562 78 AAENVNAWSGVASLLPLFGAFLADSFLGRY--RAIIIASLIYVLGLGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFF 155 (525)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (525)
-|.+.+.+.....++.-+...+..|- ..| +.+.+..++.++...+..+..+ .+ |...+...-++
T Consensus 284 hGfiFatFMlASmLGSSla~Rl~s~s-~~~ve~ymqivf~vs~a~l~Lpilt~~-vs------------P~kes~~~s~i 349 (454)
T KOG4332|consen 284 HGFIFATFMLASMLGSSLASRLLSRS-SPKVESYMQIVFLVSIAALLLPILTSS-VS------------PSKESPSESLI 349 (454)
T ss_pred chhHHHHHHHHHHHhhHHHHHHHhcC-CcccchHHHHHHHHHHHHHHHHHHHhc-cC------------CCcCCchHHHH
Confidence 36788888888888777776666654 222 2333333333333222222211 11 11223444566
Q ss_pred HHHHHHhccccCccchhhhhhccccCCCcccccccceehhhhHHHHhhhhHHHhhhhhhcccccchhhhHHHHHHHHHHH
Q 045562 156 SLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWYFGMCMGTFVTLTVLNYIQDNLNWILGFGIPCILMVIA 235 (525)
Q Consensus 156 ~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l~~~~g~~~~f~~~~~~~~~~ 235 (525)
+..++-.+.|.++|..+-+-.+..|++. |++.++++-.-.++-.-++-...--=..-.+-|..|.++.+...++
T Consensus 350 ~F~~~E~cvGlfwPSimkmRsqyIPEea------rstimNfFRvPLnifvClvLynlh~~~~p~~tr~mf~icS~~~~~a 423 (454)
T KOG4332|consen 350 GFCLFEACVGLFWPSIMKMRSQYIPEEA------RSTIMNFFRVPLNIFVCLVLYNLHVDAFPTTTRNMFGICSAFLFVA 423 (454)
T ss_pred HHHHHHHHHhhcchHHHHHHHhhCCHHH------HhhhhhheechhhHhhhhhheecccccCccccchhhhhhHHHHHHH
Confidence 7777788889999999999999999998 9999999877666554433221100011124456677766655554
Q ss_pred H
Q 045562 236 L 236 (525)
Q Consensus 236 ~ 236 (525)
.
T Consensus 424 ~ 424 (454)
T KOG4332|consen 424 S 424 (454)
T ss_pred H
Confidence 3
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 525 | ||||
| 2xut_A | 524 | Crystal Structure Of A Proton Dependent Oligopeptid | 1e-21 | ||
| 4aps_A | 491 | Crystal Structure Of A Pot Family Peptide Transport | 2e-06 |
| >pdb|2XUT|A Chain A, Crystal Structure Of A Proton Dependent Oligopeptide (Pot) Family Transporter. Length = 524 | Back alignment and structure |
|
| >pdb|4APS|A Chain A, Crystal Structure Of A Pot Family Peptide Transporter In An Inward Open Conformation. Length = 491 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} Length = 524 | Back alignment and structure |
|---|
Score = 420 bits (1081), Expect = e-142
Identities = 118/516 (22%), Positives = 200/516 (38%), Gaps = 67/516 (12%)
Query: 30 VNNRSKYGGWRSAL-FIIGVEMAERFAYYGVSSNLITYLTGPLAQST------ATAAENV 82
+N+ W + +II E ERF++YG+ + L +L L S A A +
Sbjct: 1 MNSPVDAPKWPRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVF 60
Query: 83 NAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVLGLGLLTLSAVLLSGSTSECQNTS 142
+++ PL G ++AD F G+Y I+ SLIY +G L +
Sbjct: 61 HSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFE-------------- 106
Query: 143 CSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWYFGMC 202
V F+ L+LIALG GG KP V +F DQFD + L F+ +YF +
Sbjct: 107 -----HSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNK---SLAQKAFDMFYFTIN 158
Query: 203 MGTFVTLTVLNYIQDNLNWILGFGIPCILMVIALVVFLLGTKIYRYSLKGEEKSPFLRIG 262
G+F + + N + FGIP +LM +A V F LG K Y + E
Sbjct: 159 FGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIH--MPPEPKDPHGFL 216
Query: 263 QVFVTAVRNWRITPSAIAL-------EEEARGTLPHQSSEQFKFLNKALLASNGSKGYG- 314
V +A+ I L A + + L A++ G G G
Sbjct: 217 PVIRSALLTKVEGKGNIGLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGFVGAGA 276
Query: 315 --------KVCSVGEVEEAKALLRLVPIWTTCLVYAIVFAQSSTFFTKQGVTMDRSVVAD 366
K V+ +++LR++ ++ + +F Q ++ + Q M +
Sbjct: 277 SLQLERARKSHPDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDMVKP---- 332
Query: 367 FQIPAASLQSFISLAIVLTIPIYDRIFVPIARTFTRKPAGITMLQRIGTGMFLSAASMTG 426
A +Q+ L ++L IP + + P K T L+++G G+ ++ S
Sbjct: 333 QWFEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKL---TALRKMGAGIAITGLSWIV 389
Query: 427 ATLVEMKRLKTAEEYGLVDKPNVTIPMSVWWLIPQYALLGVSEAFTMVGLQEFFYDQVPT 486
+++ + +S++W I YALL E EF Y Q P
Sbjct: 390 VGTIQLMMDGGS-------------ALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPK 436
Query: 487 ELRSVGLSLYLSIFGVGSFLSSFLISAIENATGGDG 522
++ +S + VG+ ++++ T +
Sbjct: 437 AMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQ 472
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} Length = 491 | Back alignment and structure |
|---|
Score = 121 bits (306), Expect = 6e-30
Identities = 89/488 (18%), Positives = 170/488 (34%), Gaps = 60/488 (12%)
Query: 40 RSALFIIGVEMAERFAYYGVSSNLITYLT-----GPLAQSTATAAENVNAWSGVASLLPL 94
+ EM ERF+YYG+ + L+ Y+ G L + ATAA + ++ + L
Sbjct: 13 LGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGT 72
Query: 95 FGAFLADSFLGRYRAIIIASLIYVLGLGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFF 154
G F+AD +G A+ ++ +LG +L L F F
Sbjct: 73 IGGFVADRIIGARPAVFWGGVLIMLGHIVLALP--------------------FGASALF 112
Query: 155 FSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWYFGMCMGTFVTLTVLNY 214
S+ LI +G G KP V +D + + + F+ + FG+ +G F+ ++
Sbjct: 113 GSIILIIIGTGFLKPNVSTLVGTLYDE----HDRRRDAGFSIFVFGINLGAFIAPLIVGA 168
Query: 215 IQDNLNWILGFGIPCILMVIALVVFLLGTKIYRYSLKGEEKSPFLRIGQVFVTAVRNWRI 274
Q+ + + F + I M I L+V+ G K + L +V V+
Sbjct: 169 AQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTL-DPHYLRPTDPLAPEEVKPLLVKVSLA 227
Query: 275 TPSAIALEEEARGTLPHQSSEQFKFLN-KALLASNGSKGYGKVCSVGEVEEAKALLRLVP 333
IA+ + L A+ + E ++ +P
Sbjct: 228 VAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHLRVVSYIP 287
Query: 334 IWTTCLVYAIVFAQSSTFFTKQGVTMDRSVVADFQIPAASLQSFISLAIVLTIPIYDRIF 393
++ +++ + Q S V + + P + QS L I+L P + ++
Sbjct: 288 LFIAAVLFWAIEEQGSVVLA---TFAAERVDSSW-FPVSWFQSLNPLFIMLYTPFFAWLW 343
Query: 394 VPIARTFTRKPAGITMLQRIGTGMFLSAAS---MTGATLVEMKRLKTAEEYGLVDKPNVT 450
+ +P + + G+ + S M + +
Sbjct: 344 TAWKK---NQP---SSPTKFAVGLMFAGLSFLLMAIPGAL----------------YGTS 381
Query: 451 IPMSVWWLIPQYALLGVSEAFTMVGLQEFFYDQVPTELRSVGLSLYLSIFGVGSFLSSFL 510
+S WL+ +AL+ + E P S +S++ VGS L++ L
Sbjct: 382 GKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQL 441
Query: 511 ISAIENAT 518
++ +
Sbjct: 442 VTLYNAKS 449
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 49.9 bits (118), Expect = 2e-06
Identities = 83/583 (14%), Positives = 168/583 (28%), Gaps = 177/583 (30%)
Query: 5 EVLEAERPLVEDDVVDGCVDYKGRPVNNRSKYGGWRSALFII----GVEMAERFA----- 55
+V + + ++ + +D + + + + LF EM ++F
Sbjct: 37 DVQDMPKSILSKEEIDHII--MSKDAVSGTLR------LFWTLLSKQEEMVQKFVEEVLR 88
Query: 56 --YYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIA 113
Y + S + T P + + ++ R
Sbjct: 89 INYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYN----------VSR----L 134
Query: 114 SLIYVLGLGLLTLSA---VLL-----SGSTSECQNTSCSANQFQVIFFFFSLYLIALGQG 165
L LL L VL+ SG T + C + + Q F ++ + L
Sbjct: 135 QPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDV-CLSYKVQ-CKMDFKIFWLNLKN- 191
Query: 166 GHKP----------CVQ-----AFGADQFDS-QHPLES--KLKSSFFNWWYFGMCMGTFV 207
+ P Q +D + + + S + C
Sbjct: 192 CNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC----- 246
Query: 208 TLTVLNYIQDNLNWIL-GFGIPC-ILMVIALVVFLLGTKIYRYSLKGEEKSPFLRIGQV- 264
L VL +Q+ F + C IL+ T R QV
Sbjct: 247 -LLVLLNVQN--AKAWNAFNLSCKILLT---------T----------------RFKQVT 278
Query: 265 -FVTAVRNWRITPSAIALEEEARGTLPHQSSEQF-KFLNKAL--LASNGSKGYGKVCSVG 320
F++A T + I+L+ + P + K+L+ L + S+
Sbjct: 279 DFLSAA-----TTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSI- 332
Query: 321 EVEEAKALLRLVPI-WTTCLVYAIVFAQSSTFFTKQGVTMDRSVVADFQIPAASLQSFIS 379
+R W + + K ++ S+ + PA + F
Sbjct: 333 ----IAESIRDGLATWDN-------WKHVN--CDKLTTIIESSL--NVLEPAEYRKMFDR 377
Query: 380 LAIVLTIPIYDRIF---VPIARTFTRKPAG-ITML--QRIGTGMFLSAASMTGATLVEMK 433
L+ +F I P ++++ I + + + + +LVE +
Sbjct: 378 LS----------VFPPSAHI-------PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQ 420
Query: 434 ---------------RLKTAEEYGLVDKPNVTIPMSVWWLIPQYALLGV--SEAFTMVGL 476
++K EY L ++ Y + S+ L
Sbjct: 421 PKESTISIPSIYLELKVKLENEYALHRS-----------IVDHYNIPKTFDSDDLIPPYL 469
Query: 477 QEFFYDQVPTELRSVGLSLYLSIFGVGSFLS-SFLISAIENAT 518
++FY + L+++ +++F + FL FL I + +
Sbjct: 470 DQYFYSHIGHHLKNIEHPERMTLFRM-VFLDFRFLEQKIRHDS 511
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 49.1 bits (116), Expect = 3e-06
Identities = 60/388 (15%), Positives = 111/388 (28%), Gaps = 128/388 (32%)
Query: 206 FVTLTVLNYIQDNLNWILG-------FGIPCILMVIALVVFLL---GTKIYRYSLKGEEK 255
FV +QD IL + + + L ++ + ++ +
Sbjct: 29 FVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLR 88
Query: 256 S--PFLRIGQVFVTAVRNWRITPSAIALE-EEARGTL--------PHQSS--EQFKFLNK 302
FL ++ ++ + PS + E R L + S + + L +
Sbjct: 89 INYKFL------MSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQ 142
Query: 303 ALL----ASN----GSKGYGKVCSVGEVEEAKALLRLVP---IWTT---CLVYAIVFAQS 348
ALL A N G G GK +V + + + W C V
Sbjct: 143 ALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEML 202
Query: 349 STFFTK------QGVTMDRSVVADFQIPAASLQSFI-------SLAIVL-------TIPI 388
+ ++ A L+ + L +VL
Sbjct: 203 QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL-LVLLNVQNAKAWNA 261
Query: 389 YD---RIFVPIARTFTRKPAGITMLQRIGTGMFLSAASMTGATLVEMKR-LKTAEEYGLV 444
++ +I + T TR +T FLSAA+ T +L L E L+
Sbjct: 262 FNLSCKILL----T-TRF-KQVT--------DFLSAATTTHISLDHHSMTLTPDEVKSLL 307
Query: 445 DKPNVTIPMSVWWL------IPQYALLGVSEAFTMVG--LQEF-----FYDQV------- 484
K +L +P+ L +++ +++ + V
Sbjct: 308 LK----------YLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTT 357
Query: 485 ----------PTELRSVGLSLY--LSIF 500
P E R ++ LS+F
Sbjct: 358 IIESSLNVLEPAEYR----KMFDRLSVF 381
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 525 | |||
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.97 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.97 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.95 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.94 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.92 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.87 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.86 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.47 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.4 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.34 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.22 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.07 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 98.99 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 98.08 |
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.9e-29 Score=266.60 Aligned_cols=416 Identities=20% Similarity=0.272 Sum_probs=287.0
Q ss_pred cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----cCCChHHHHHHHHHHHHHHHhhhhhHHHHhhh-ccchHH
Q 045562 35 KYGGWRSALFIIGVEMAERFAYYGVSSNLITYLTGP-----LAQSTATAAENVNAWSGVASLLPLFGAFLADS-FLGRYR 108 (525)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~-----lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~-~~Grr~ 108 (525)
.++++|..+.+.+..++.++.+|++.++++.|+++. +|.+..+.+++.+.+.++..++.+++|+++|| + |||+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~-g~r~ 86 (491)
T 4aps_A 8 FFGQPLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRII-GARP 86 (491)
T ss_dssp ---CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-CHHH
T ss_pred hhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cchH
Confidence 345677889999999999999999999999999988 99999999999999999999999999999999 8 9999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCccccc
Q 045562 109 AIIIASLIYVLGLGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESK 188 (525)
Q Consensus 109 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~ 188 (525)
++..+.++..++.+++.++.+ .+.++++|+++|++.+...++..++++|++|+++++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~--- 143 (491)
T 4aps_A 87 AVFWGGVLIMLGHIVLALPFG--------------------ASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRR--- 143 (491)
T ss_dssp HHHHHHHHHHHHHHHHHSCCS--------------------TTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTH---
T ss_pred HHHHHHHHHHHHHHHHHHhhh--------------------HHHHHHHHHHHHHHHHhccchHHHHHHHHcCccccc---
Confidence 999999999999888887643 678899999999999999999999999999987632
Q ss_pred ccceehhhhHHHHhhhhHHHhhhhhhcccccchhhhHHHHHHHHHHHHHHHHhcccceeecCC--CCCCchhhhHHHHHH
Q 045562 189 LKSSFFNWWYFGMCMGTFVTLTVLNYIQDNLNWILGFGIPCILMVIALVVFLLGTKIYRYSLK--GEEKSPFLRIGQVFV 266 (525)
Q Consensus 189 ~r~~~~~~~~~~~~~g~~~gp~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 266 (525)
|++++++++...++|..++|.+++++.++.||+++|++.++..+++++.++...++..+.++ +++.....+..+...
T Consensus 144 -r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (491)
T 4aps_A 144 -RDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLV 222 (491)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHH
T ss_pred -ceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHH
Confidence 66788889999999999999999999999999999999887777666655544333222111 110011111111100
Q ss_pred H--------------HHhccccCCchhhhHhhhhCCCCCCCccchhhhhHHHh-hc-CCCCCCCcccchhhHHHHHHHHH
Q 045562 267 T--------------AVRNWRITPSAIALEEEARGTLPHQSSEQFKFLNKALL-AS-NGSKGYGKVCSVGEVEEAKALLR 330 (525)
Q Consensus 267 ~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~l~~ 330 (525)
. .......+.+. .......... .. ......+++... ...++++...
T Consensus 223 ~~g~~l~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 284 (491)
T 4aps_A 223 KVSLAVAGFIAIIVVMNLVGWNSLPA-----------------YINLLTIVAIAIPVFYFAWMISSVKV-TSTEHLRVVS 284 (491)
T ss_dssp HCCCCCHHHHHHHHHHHHHSSCCTTH-----------------HHHHHHHHHHHHHHHHHHHHC-------------CTT
T ss_pred HHHHHHHHHHHHHHHHHhccCccccc-----------------chhhhhHHHHHHHHHHHHHHhhcccc-cHHHHHHHHH
Confidence 0 00000000000 0000000000 00 000000000000 1223344444
Q ss_pred HHHHHHHHHHHHHHHhhccchhhhhhhc-cccCcccccccChhhhhhhhhHHHHHHHHhhhhhhhhhhhhhccCCCCCCc
Q 045562 331 LVPIWTTCLVYAIVFAQSSTFFTKQGVT-MDRSVVADFQIPAASLQSFISLAIVLTIPIYDRIFVPIARTFTRKPAGITM 409 (525)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~l~~r~~~~~~~~~~ 409 (525)
...++.....++..+.+....+..+... .+. .....+.+...+.+..++..++.++ +.||++||+ ...
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~----l~~r~~~r~--~~~ 353 (491)
T 4aps_A 285 YIPLFIAAVLFWAIEEQGSVVLATFAAERVDS-----SWFPVSWFQSLNPLFIMLYTPFFAW----LWTAWKKNQ--PSS 353 (491)
T ss_dssp HHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCC-----SSSCSGGGTTHHHHHHHHHHHHHHH----HHHHTTTC-----C
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHhcc-----CccCHHHHhccchHHHHHHHHHHHH----HHHHHhccC--CCc
Confidence 4555556666777777776655544322 121 1144566777778888888888776 567776653 345
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCcCCCCCCccchHHHHHHHHHHHHHHHHHHhhhhHHHhhhccCchhH
Q 045562 410 LQRIGTGMFLSAASMTGATLVEMKRLKTAEEYGLVDKPNVTIPMSVWWLIPQYALLGVSEAFTMVGLQEFFYDQVPTELR 489 (525)
Q Consensus 410 ~~~i~ig~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~r 489 (525)
.+.+.++.++.+++++......... + .....+.+++++.+++.+++++...+..++++.+..|++.|
T Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~-------~------~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~ 420 (491)
T 4aps_A 354 PTKFAVGLMFAGLSFLLMAIPGALY-------G------TSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFN 420 (491)
T ss_dssp HHHHHHHHHHHHHHHTTTHHHHHHC-------C------CCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhc-------C------CCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHH
Confidence 6677789999888887777653210 0 00024677788888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 045562 490 SVGLSLYLSIFGVGSFLSSFLISAIENA 517 (525)
Q Consensus 490 g~~~gi~~~~~~lg~~lg~~~~~~i~~~ 517 (525)
|+++|++++...+|+.+++.+.+.+.+.
T Consensus 421 g~~~g~~~~~~~~g~~i~~~~~~~~~~~ 448 (491)
T 4aps_A 421 SQMMSMWFLSSSVGSALNAQLVTLYNAK 448 (491)
T ss_dssp SSSTHHHHHHHHHHHHHHHHHGGGGGGS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999998887654
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-29 Score=271.61 Aligned_cols=432 Identities=25% Similarity=0.413 Sum_probs=277.5
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHhccccC------CChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHH
Q 045562 37 GGWRSALFIIGVEMAERFAYYGVSSNLITYLTGPLA------QSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAI 110 (525)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg------~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~ 110 (525)
+++|..+.+....++..+.+|++.++++.|+++++| .+..+.+++.+.+.++..++.+++|+++||++|||+++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~ 88 (524)
T 2xut_A 9 KWPRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTI 88 (524)
T ss_dssp ----CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 345677888889999999999999999999999999 99999999999999999999999999999965999999
Q ss_pred HHHHHHHHHHHHHHHHhh-hhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccc
Q 045562 111 IIASLIYVLGLGLLTLSA-VLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKL 189 (525)
Q Consensus 111 ~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~ 189 (525)
..+.++..++.+++.++. + .+.+++.|++.|++.+...|+..++++|.+|+++
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------ 142 (524)
T 2xut_A 89 LWLSLIYCVGHAFLAIFEHS--------------------VQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSN------ 142 (524)
T ss_dssp HHHHHHHHHHHHHHHHTSSC--------------------HHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTT------
T ss_pred HHHHHHHHHHHHHHHHhccc--------------------HHHHHHHHHHHHHhccccchhHHHHHHHHcCccc------
Confidence 999999999988888764 3 6888999999999999999999999999999888
Q ss_pred ccee---hhhhHHHHhhhhHHHhhhhhhcccccchhhhHHHHHHHHHHHHHHHHhcccceeecCCCCCCchhhhHHHHHH
Q 045562 190 KSSF---FNWWYFGMCMGTFVTLTVLNYIQDNLNWILGFGIPCILMVIALVVFLLGTKIYRYSLKGEEKSPFLRIGQVFV 266 (525)
Q Consensus 190 r~~~---~~~~~~~~~~g~~~gp~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (525)
|+++ +++++...++|..++|.+++++.+..||+++|++.+++.+++.+.++...++.++.++++ ++..+..+...
T Consensus 143 r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 220 (524)
T 2xut_A 143 KSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEP--KDPHGFLPVIR 220 (524)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC----------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcccccccCCCC--ccchhHHHHHH
Confidence 7554 455899999999999999999998899999999988777666665555444333222222 11111111111
Q ss_pred HHHhccccCCchhhhHhhhhC----CCCCCCccchhhhhH------HHhhcCCCCCCCc-------ccchhhHHHHHHHH
Q 045562 267 TAVRNWRITPSAIALEEEARG----TLPHQSSEQFKFLNK------ALLASNGSKGYGK-------VCSVGEVEEAKALL 329 (525)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~------~~~~~~~~~~~~~-------~~~~~~~~~~~~l~ 329 (525)
...+++..+.+......+..+ ............... ...+. ..+.+|+ ........++++++
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (524)
T 2xut_A 221 SALLTKVEGKGNIGLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGF-VGAGASLQLERARKSHPDAAVDGVRSVL 299 (524)
T ss_dssp ------CTTHHHHHHHHHHHHHHHHHHTGGGTTTTCSSHHHHHHHHHHHHH-HHTGGGTHHHHSCCSCCSSSSTTTTTHH
T ss_pred HHHhhhhcccCccchhhhhhhhhhhhhhhcccchhhhhhhhhhhhhhhhcc-cccchhhHHhhhhccccHhHHHHHHHHH
Confidence 111111110000000000000 000000000000000 00000 0001110 00000112233333
Q ss_pred HHHHHHHHHHHHHHHHhhccchhhhhhhccccCcccccccChhhhhhhhhHHHHHHHHhhhhhhhhhhhhhccCCCCCCc
Q 045562 330 RLVPIWTTCLVYAIVFAQSSTFFTKQGVTMDRSVVADFQIPAASLQSFISLAIVLTIPIYDRIFVPIARTFTRKPAGITM 409 (525)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~l~~r~~~~~~~~~~ 409 (525)
....++.....++..+.+....+..+...++... + .+.+.+...+.+..++..++.+++..+..+|.++| .++
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 372 (524)
T 2xut_A 300 RILVLFALVTPFWSLFDQKASTWILQANDMVKPQ---W-FEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVK---LTA 372 (524)
T ss_dssp HHHHHHTTSHHHHTTTSSTTTHHHHHHHHSCCCS---S-SCHHHHHTTSGGGHHHHGGGTTTC---------------CC
T ss_pred HHHHHHHHHHHHHHHHhccchhhHHhHHhcCCCe---e-ecHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCC---CCh
Confidence 3444444444555555666555555443333210 1 24566777778888888999888766666665544 456
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCcCCCCCCccchHHHHHHHHHHHHHHHHHHhhhhHHHhhhccCchhH
Q 045562 410 LQRIGTGMFLSAASMTGATLVEMKRLKTAEEYGLVDKPNVTIPMSVWWLIPQYALLGVSEAFTMVGLQEFFYDQVPTELR 489 (525)
Q Consensus 410 ~~~i~ig~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~r 489 (525)
.+.+.+|.++.+++++.....+... + .....+.+++++.+++.+++++...+..++++.+.+|+++|
T Consensus 373 ~~~~~~g~~~~~~~~~~~~~~~~~~-----~--------~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~ 439 (524)
T 2xut_A 373 LRKMGAGIAITGLSWIVVGTIQLMM-----D--------GGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMK 439 (524)
T ss_dssp HHHHHTHHHHHHHHHHTTTTTTTTT-----T--------TTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-----c--------CCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHH
Confidence 6777888888888877766532100 0 00024677788889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 045562 490 SVGLSLYLSIFGVGSFLSSFLISAIENA 517 (525)
Q Consensus 490 g~~~gi~~~~~~lg~~lg~~~~~~i~~~ 517 (525)
|+++|++++...+|+.+++.+.+.+.+.
T Consensus 440 g~~~g~~~~~~~~g~~~g~~~~g~~~~~ 467 (524)
T 2xut_A 440 GTIMSFWTLSVTVGNLWVLLANVSVKSP 467 (524)
T ss_dssp TTTHHHHGGGHHHHHHHHHHHHHHTTSC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999999999999999999999988764
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.8e-26 Score=241.70 Aligned_cols=376 Identities=9% Similarity=-0.018 Sum_probs=247.1
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHH
Q 045562 39 WRSALFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYV 118 (525)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~ 118 (525)
++..+.+....+...+..+.+.+.+|.+.. ++ .+..+.+++.+.+.++..++.+++|+++||+ |||+++.++.++..
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~ 103 (451)
T 1pw4_A 27 WQIFLGIFFGYAAYYLVRKNFALAMPYLVE-QG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAA 103 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHTSHHHHHHHTTS-ST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhc-CchHHHHHHHHHHH
Confidence 444556666666777777667777776554 66 9999999999999999999999999999999 99999999999999
Q ss_pred HHHHHHHH----hhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceeh
Q 045562 119 LGLGLLTL----SAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFF 194 (525)
Q Consensus 119 ~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 194 (525)
++.+++++ ..+ ++.++++|++.|++.+...+...+++.|.+|+++ |++++
T Consensus 104 ~~~~~~~~~~~~~~~--------------------~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~------r~~~~ 157 (451)
T 1pw4_A 104 AVMLFMGFVPWATSS--------------------IAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------RGGIV 157 (451)
T ss_dssp HHHHHHHHCHHHHSS--------------------SSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH------HHHHH
T ss_pred HHHHHHHhhhhcccc--------------------HHHHHHHHHHHHHHhhhccchHHHHHHHHCCchh------hhHHH
Confidence 99999888 533 6788899999999999999999999999999988 99999
Q ss_pred hhhHHHHhhhhHHHhhhhhhcccccc-hhhhHHHHHHHHHHHHHHHHhcccceeecCCCCCCchhhhHHHHHHHHHhccc
Q 045562 195 NWWYFGMCMGTFVTLTVLNYIQDNLN-WILGFGIPCILMVIALVVFLLGTKIYRYSLKGEEKSPFLRIGQVFVTAVRNWR 273 (525)
Q Consensus 195 ~~~~~~~~~g~~~gp~~~~~l~~~~g-~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (525)
++.+...++|..++|.+++++.+.+| |+++|++.+++.++..+..+...++.+.....++.+.. .
T Consensus 158 ~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~ 223 (451)
T 1pw4_A 158 SVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEY--------------K 223 (451)
T ss_dssp HHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTT--------------C
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhh--------------c
Confidence 99999999999999999999888888 99999998877666555444433332211111000000 0
Q ss_pred cCCchhhhHhhhhCCCCCCCccchhhhhHHHhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccchhh
Q 045562 274 ITPSAIALEEEARGTLPHQSSEQFKFLNKALLASNGSKGYGKVCSVGEVEEAKALLRLVPIWTTCLVYAIVFAQSSTFFT 353 (525)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (525)
.... + +. + .+...+.++++.........+.++..... ....+..+.....+++
T Consensus 224 --~~~~---------------~--~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 276 (451)
T 1pw4_A 224 --NDYP---------------D--DY-N----EKAEQELTAKQIFMQYVLPNKLLWYIAIA---NVFVYLLRYGILDWSP 276 (451)
T ss_dssp --CC-----------------------------------CCTHHHHHHTSSCHHHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred --cccc---------------c--cc-h----hhhhcccccccchHHHHHcCHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 0000 0 00 0 00000111111000001111222222211 1111222222222222
Q ss_pred hhhhccccCcccccccChhhhhhhhhHHHHHHHHhhhhhhhhhhhhh--ccCCCCCCchHHHHHHHHHHH-HHHHHHHHH
Q 045562 354 KQGVTMDRSVVADFQIPAASLQSFISLAIVLTIPIYDRIFVPIARTF--TRKPAGITMLQRIGTGMFLSA-ASMTGATLV 430 (525)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~l~~r~--~~~~~~~~~~~~i~ig~~l~~-i~~~~~~~~ 430 (525)
.+ +....+. .....+.+.....+..++..++.+. +.||+ ++| +.+.++..+.. ++++.+...
T Consensus 277 ~~---~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~g~----l~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~ 341 (451)
T 1pw4_A 277 TY---LKEVKHF-ALDKSSWAYFLYEYAGIPGTLLCGW----MSDKVFRGNR-------GATGVFFMTLVTIATIVYWMN 341 (451)
T ss_dssp HH---BTTBSCC-CHHHHHHHHHHHHHHHHHHHHHHHH----HHHHTSTTCH-------HHHHHHHHHHHHHHHHHTTSC
T ss_pred HH---HHHhcCC-CHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhcCCc-------hhHHHHHHHHHHHHHHHHHHh
Confidence 21 1111111 1111233445555555555555554 66775 433 45555555544 555444431
Q ss_pred HHHHHhhhhhcCCcCCCCCCccchHHHHHHHHHHHHHHHHHHhhhhHHHhhhccCchhHHHHHHHHHHHHHH-HHHHHHH
Q 045562 431 EMKRLKTAEEYGLVDKPNVTIPMSVWWLIPQYALLGVSEAFTMVGLQEFFYDQVPTELRSVGLSLYLSIFGV-GSFLSSF 509 (525)
Q Consensus 431 ~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~l-g~~lg~~ 509 (525)
. ..+.+.+....++.|++.....+..+.++.+..|++.||+++|++++...+ |..+++.
T Consensus 342 ~--------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~ 401 (451)
T 1pw4_A 342 P--------------------AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASA 401 (451)
T ss_dssp C--------------------TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred c--------------------ccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 0 125666777778888888888898899999999999999999999999999 9999999
Q ss_pred HHHHhhhhcc
Q 045562 510 LISAIENATG 519 (525)
Q Consensus 510 ~~~~i~~~~~ 519 (525)
+.|.+.+.+|
T Consensus 402 ~~g~l~~~~g 411 (451)
T 1pw4_A 402 IVGYTVDFFG 411 (451)
T ss_dssp HHHHHHHSSC
T ss_pred HHHHHHHhcC
Confidence 9999988765
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=6.1e-25 Score=229.28 Aligned_cols=355 Identities=10% Similarity=0.041 Sum_probs=238.5
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHH
Q 045562 38 GWRSALFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIY 117 (525)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~ 117 (525)
+++.++.+....+...+......+.+|. +.+++|.+..+.+++.+.+.++..++.++.|+++||+ |||++++++.++.
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~l~~~~~~~ 101 (438)
T 3o7q_A 24 YIIPFALLCSLFFLWAVANNLNDILLPQ-FQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGLFLY 101 (438)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHS-CHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchHHHHHHHHHH
Confidence 3445555556666666666655555555 6678999999999999999999999999999999999 9999999999999
Q ss_pred HHHHHHH---HHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceeh
Q 045562 118 VLGLGLL---TLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFF 194 (525)
Q Consensus 118 ~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 194 (525)
.++.+++ ....+ ++.++++|++.|++.+...+...++++|.+|+++ |++++
T Consensus 102 ~~~~~~~~~~~~~~~--------------------~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~------r~~~~ 155 (438)
T 3o7q_A 102 ALGAALFWPAAEIMN--------------------YTLFLVGLFIIAAGLGCLETAANPFVTVLGPESS------GHFRL 155 (438)
T ss_dssp HHHHHHHHHHHHTTC--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTT------HHHHH
T ss_pred HHHHHHHHhcccccc--------------------HHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchh------HHHHH
Confidence 9999888 44433 7889999999999999999999999999999999 99999
Q ss_pred hhhHHHHhhhhHHHhhhhhhcc-cccc-------------------------hhhhHHHHHHHHHHHHHHHHhcc-ccee
Q 045562 195 NWWYFGMCMGTFVTLTVLNYIQ-DNLN-------------------------WILGFGIPCILMVIALVVFLLGT-KIYR 247 (525)
Q Consensus 195 ~~~~~~~~~g~~~gp~~~~~l~-~~~g-------------------------~~~~f~~~~~~~~~~~~~~~~~~-~~~~ 247 (525)
++.+...++|..++|.+++++. +..+ |++.|++.++..++..+.++..+ ++.+
T Consensus 156 ~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~ 235 (438)
T 3o7q_A 156 NLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQ 235 (438)
T ss_dssp HHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCccc
Confidence 9999999999999999999987 5554 99999776655554444433322 2111
Q ss_pred ecCCCCCCchhhhHHHHHHHHHhccccCCchhhhHhhhhCCCCCCCccchhhhhHHHhhcCCCCCCCcccchhhHHHHHH
Q 045562 248 YSLKGEEKSPFLRIGQVFVTAVRNWRITPSAIALEEEARGTLPHQSSEQFKFLNKALLASNGSKGYGKVCSVGEVEEAKA 327 (525)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (525)
++++++ +.. +....++. .....+.
T Consensus 236 ~~~~~~--~~~----------------------------------~~~~~~~~--------------------~~~~~~~ 259 (438)
T 3o7q_A 236 SDNHSD--AKQ----------------------------------GSFSASLS--------------------RLARIRH 259 (438)
T ss_dssp TTCCCC--SST----------------------------------TSHHHHHH--------------------HHTTCSH
T ss_pred cccccc--ccc----------------------------------cchhhhHH--------------------HHHhChH
Confidence 100000 000 00000000 0000111
Q ss_pred HHHHHHH-HHHHHHHHHHHhhccchhhhhhhccccCcccccccChhhhhhhhhHHHHHHHHhhhhhhhhhhhhhccCCCC
Q 045562 328 LLRLVPI-WTTCLVYAIVFAQSSTFFTKQGVTMDRSVVADFQIPAASLQSFISLAIVLTIPIYDRIFVPIARTFTRKPAG 406 (525)
Q Consensus 328 l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~l~~r~~~~~~~ 406 (525)
++..... .+............+.++..+ ..+. .....+.+.....+..++..++.+. +.||+++|
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~g~-~~~~~~~~~~~~~~~~~~~~~~~g~----l~~r~~~~--- 325 (438)
T 3o7q_A 260 WRWAVLAQFCYVGAQTACWSYLIRYAVEE------IPGM-TAGFAANYLTGTMVCFFIGRFTGTW----LISRFAPH--- 325 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------STTC-CHHHHHHHHHHHHHHHHHHHHHHHH----HHHHSCHH---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhc------cCCc-chhHHHHHHHHHHHHHHHHHHHHHH----HHHHhcch---
Confidence 2121111 111111222222222221111 1111 1111233444444555555555554 67775443
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCcCCCCCCccchHHHHHHHHHHHHHHHHHHhhhhHHHhhhccCc
Q 045562 407 ITMLQRIGTGMFLSAASMTGATLVEMKRLKTAEEYGLVDKPNVTIPMSVWWLIPQYALLGVSEAFTMVGLQEFFYDQVPT 486 (525)
Q Consensus 407 ~~~~~~i~ig~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~ 486 (525)
+.+.++.++.+++.+...+. .+.+ .....++.+++.+...|..+++..+..|+
T Consensus 326 ----~~~~~~~~~~~~~~~~~~~~----------------------~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 378 (438)
T 3o7q_A 326 ----KVLAAYALIAMALCLISAFA----------------------GGHV-GLIALTLCSAFMSIQYPTIFSLGIKNLGQ 378 (438)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHC----------------------CHHH-HHHHHHHHHHHHTTHHHHHHHHHHSSCGG
T ss_pred ----HHHHHHHHHHHHHHHHHHHc----------------------CCcH-HHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 67777777777776666542 2333 34445778888898999999999999998
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 045562 487 ELRSVGLSLYLSIFGVGSFLSSFLISAIENATG 519 (525)
Q Consensus 487 ~~rg~~~gi~~~~~~lg~~lg~~~~~~i~~~~~ 519 (525)
+ ++.++++.. ...+|+.++|.+.|.+.+.+|
T Consensus 379 ~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g 409 (438)
T 3o7q_A 379 D-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAG 409 (438)
T ss_dssp G-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHT
T ss_pred c-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhc
Confidence 7 999999887 677999999999999999886
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.92 E-value=3.1e-24 Score=219.76 Aligned_cols=346 Identities=12% Similarity=0.076 Sum_probs=235.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHHHHHH
Q 045562 43 LFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVLGLG 122 (525)
Q Consensus 43 ~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~~~~~ 122 (525)
+.+....+...+....+.+.+|.+ .+++|.+..+.+++.+.+.+...++.++.|+++||+ |||+++..+.++..++..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~ 80 (375)
T 2gfp_A 3 LMLVLLVAVGQMAQTIYIPAIADM-ARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRV-GRRPVILVGMSIFMLATL 80 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-HTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTS-CCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHH-HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHHHHHH
Confidence 345556666777777777777765 568999999999999999999999999999999999 999999999999999998
Q ss_pred HHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhhHHHHh
Q 045562 123 LLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWYFGMC 202 (525)
Q Consensus 123 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 202 (525)
++.+.++ .+.+++.|++.|++.+...+...+++.|.+|+++ |++++++.+....
T Consensus 81 ~~~~~~~--------------------~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~ 134 (375)
T 2gfp_A 81 VAVTTSS--------------------LTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQ------LRHANSLLNMGIL 134 (375)
T ss_dssp HHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS------CCSHHHHHHHHHH
T ss_pred HHHHhcc--------------------HHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHH------HHHHHHHHHHHHH
Confidence 8888755 7889999999999999999999999999999988 9999999999999
Q ss_pred hhhHHHhhhhhhcccccchhhhHHHHHHHHHHHHHHHHhcccceeecCCCCCCchhhhHHHHHHHHHhccccCCchhhhH
Q 045562 203 MGTFVTLTVLNYIQDNLNWILGFGIPCILMVIALVVFLLGTKIYRYSLKGEEKSPFLRIGQVFVTAVRNWRITPSAIALE 282 (525)
Q Consensus 203 ~g~~~gp~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (525)
+|..++|.+++++.+.+||+..|++.++..++..+......++.+ ++++ ++
T Consensus 135 ~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~------------------------- 185 (375)
T 2gfp_A 135 VSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETR---PVDA-PR------------------------- 185 (375)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCCS---TTTC-CC-------------------------
T ss_pred HHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcccC---CCCc-cc-------------------------
Confidence 999999999999999899999998877665544442322222211 1110 00
Q ss_pred hhhhCCCCCCCccchhhhhHHHhhcCCCCCCCcccchhhHHHHHHHHHHHHHH-HHHHHHHHHHhhccchhhhhhhcccc
Q 045562 283 EEARGTLPHQSSEQFKFLNKALLASNGSKGYGKVCSVGEVEEAKALLRLVPIW-TTCLVYAIVFAQSSTFFTKQGVTMDR 361 (525)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (525)
+ ..+.+++ ...+.+.++...... +............+.++... ...+
T Consensus 186 ----------~---------------~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~- 233 (375)
T 2gfp_A 186 ----------T---------------RLLTSYK-----TLFGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAV-LGLS- 233 (375)
T ss_dssp ----------C---------------CTTTCST-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSSHHH-HHHH-
T ss_pred ----------c---------------cHHHHHH-----HHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCC-
Confidence 0 0011111 122223333222221 22222222222222222210 1111
Q ss_pred CcccccccChhhhhhhhhHHHHHHHHhhhhhhhhhhhhhccCCCCCCchHHHHHHHHH-HHHHHH--HHHHHHHHHHhhh
Q 045562 362 SVVADFQIPAASLQSFISLAIVLTIPIYDRIFVPIARTFTRKPAGITMLQRIGTGMFL-SAASMT--GATLVEMKRLKTA 438 (525)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~l~~r~~~~~~~~~~~~~i~ig~~l-~~i~~~--~~~~~~~~~~~~~ 438 (525)
....+.+.....+..++..++.++ +.||.++ ++..+..+ ...+.. ......
T Consensus 234 ------~~~~g~~~~~~~~~~~~~~~~~~~----l~~r~~~---------~~~~~~~~~~~~~~~~~~~~~~~------- 287 (375)
T 2gfp_A 234 ------SMTVSILFILPIPAAFFGAWFAGR----PNKRFST---------LMWQSVICCLLAGLLMWIPDWFG------- 287 (375)
T ss_dssp ------HHHHHHHHHTHHHHHHHHHHHHHT----TTTHHHH---------HHHHHHHHHHHTSSSSSHHHHHH-------
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH---------HHHHHHHHHHHHHHHHHHHhhhc-------
Confidence 111223344444444454544443 5565421 23344433 222222 222211
Q ss_pred hhcCCcCCCCCCccchHHHHHHHHHHHHHHHHHHhhhhHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 045562 439 EEYGLVDKPNVTIPMSVWWLIPQYALLGVSEAFTMVGLQEFFYDQVPTELRSVGLSLYLSIFGVGSFLSSFLISAIENA 517 (525)
Q Consensus 439 ~~~g~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~lg~~lg~~~~~~i~~~ 517 (525)
..+.+.+....++.+++.+...+...+++.+..| +.||++.|+.+....+|..+++.+.+.+.+.
T Consensus 288 -------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~ 352 (375)
T 2gfp_A 288 -------------VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQT 352 (375)
T ss_dssp -------------HHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHH
T ss_pred -------------cccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 1255666677888899999999999999999998 8899999999999999999999988887654
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=3.4e-21 Score=204.18 Aligned_cols=157 Identities=13% Similarity=0.163 Sum_probs=118.0
Q ss_pred hHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhccCCCCccCCCCcCCCchhHHHHH
Q 045562 75 TATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVLGLGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFF 154 (525)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (525)
....+++.+++.++..++.+++|+++||+ |||+++.++.+++.++.++++++.............. ..-..+.+.++
T Consensus 54 ~~~~g~~~s~~~~G~~iG~~~~G~laDr~-GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~--~~~a~~~~~l~ 130 (491)
T 4gc0_A 54 NSLLGFCVASALIGCIIGGALGGYCSNRF-GRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVP--VYLAGYVPEFV 130 (491)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCC--GGGGGCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHH--HHHhhhHHHHH
Confidence 45668888999999999999999999999 9999999999999999999885421100000000000 00012378999
Q ss_pred HHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhhHHHHhhhhHHHhhhhhhccc--------ccchhhhHH
Q 045562 155 FSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWYFGMCMGTFVTLTVLNYIQD--------NLNWILGFG 226 (525)
Q Consensus 155 ~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l~~--------~~g~~~~f~ 226 (525)
++|+++|+|.|+..+..+++++|..|+++ |++..++.+.+..+|..+++.++..+.. ..+|+..+.
T Consensus 131 ~~R~l~G~g~G~~~~~~~~~i~E~~p~~~------rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (491)
T 4gc0_A 131 IYRIIGGIGVGLASMLSPMYIAELAPAHI------RGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFA 204 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSCGGG------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCHHh------hhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhh
Confidence 99999999999999999999999999998 9999999999999999999888765543 235777666
Q ss_pred HHHHHHHHHHHHHH
Q 045562 227 IPCILMVIALVVFL 240 (525)
Q Consensus 227 ~~~~~~~~~~~~~~ 240 (525)
+..+..++.++..+
T Consensus 205 ~~~~~~~~~~~~~~ 218 (491)
T 4gc0_A 205 SECIPALLFLMLLY 218 (491)
T ss_dssp TTHHHHHHHHHHGG
T ss_pred hhhhhhhhhhhhhh
Confidence 65555444444333
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=4.7e-22 Score=207.32 Aligned_cols=366 Identities=11% Similarity=-0.003 Sum_probs=212.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHHH
Q 045562 40 RSALFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVL 119 (525)
Q Consensus 40 ~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~~ 119 (525)
|+.+.+....+.....+..+.+++|.|+++++|.|..+.+++.+.+.++..++++++|+++||+ |||++++++..+..+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~-Grr~~l~~~~~~~~~ 85 (417)
T 2cfq_A 7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGMLV 85 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTS-TTCCHHHHHHHHTTS
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHH
Confidence 4556666666666667777789999999999999999999999999999999999999999999 999999988876654
Q ss_pred HHHHH---HHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhh
Q 045562 120 GLGLL---TLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNW 196 (525)
Q Consensus 120 ~~~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 196 (525)
+...+ ...... ...++..+++.+++.+...+...+...+..++..+ .++..++.
T Consensus 86 ~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~----~~~~~~g~ 142 (417)
T 2cfq_A 86 MFAPFFIFIFGPLL-------------------QYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSR----RSNFEFGR 142 (417)
T ss_dssp CHHHHHHHTHHHHH-------------------HTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHH----HHTCCHHH
T ss_pred HHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhh----hcccchHH
Confidence 32211 111100 00123344455555554444444444444443211 16777888
Q ss_pred hHHHHhhhhHHHhhhhhhcccccchhhhHHHHHHHHHHHHHHHHhcccceeecCCCCCCchhhhHHHHHHHHHhccccCC
Q 045562 197 WYFGMCMGTFVTLTVLNYIQDNLNWILGFGIPCILMVIALVVFLLGTKIYRYSLKGEEKSPFLRIGQVFVTAVRNWRITP 276 (525)
Q Consensus 197 ~~~~~~~g~~~gp~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (525)
.+...++|..++|.+++++.+ .+|+..|++.++..++.++..+..+++.++ +++++ +. .
T Consensus 143 ~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~---------------~--- 201 (417)
T 2cfq_A 143 ARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCALILAVLLFFAKTDAPS-SATVA-NA---------------V--- 201 (417)
T ss_dssp HSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTTTTHHHHSCSSCCCCSC-SSCSS-SS---------------S---
T ss_pred HHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHHHHHcCccccc-ccccc-cc---------------c---
Confidence 888889999999999999887 689999887665533333322222221100 00000 00 0
Q ss_pred chhhhHhhhhCCCCCCCccchhhhhHHHhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhc-cchhhhh
Q 045562 277 SAIALEEEARGTLPHQSSEQFKFLNKALLASNGSKGYGKVCSVGEVEEAKALLRLVPIWTTCLVYAIVFAQS-STFFTKQ 355 (525)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 355 (525)
. ++.+ +.++++.. +..+ .+.++............+..+.+. +.++..+
T Consensus 202 -------------~-~~~~---------------~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (417)
T 2cfq_A 202 -------------G-ANHS---------------AFSLKLAL-ELFR-QPKLWFLSLYVIGVSCTYDVFDQQFANFFTSF 250 (417)
T ss_dssp -------------S-SCCC---------------CCCHHHHH-HHTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred -------------c-cccc---------------cccHHHHH-HHhc-CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0000 00000000 0011 122222222211111222222222 2222211
Q ss_pred hhccccCcccccccChhhhhhhhhHHHHHHHHhhhhhhhhhhhhhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045562 356 GVTMDRSVVADFQIPAASLQSFISLAIVLTIPIYDRIFVPIARTFTRKPAGITMLQRIGTGMFLSAASMTGATLVEMKRL 435 (525)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~l~~r~~~~~~~~~~~~~i~ig~~l~~i~~~~~~~~~~~~~ 435 (525)
.+.. +. .....+.+...+.+..++..++.++ +.||+++| +.+.++.++.+++++....
T Consensus 251 ---~~~~-~~-~~~~~g~~~~~~~~~~~~~~~~~g~----l~dr~g~~-------~~l~~~~~~~~~~~~~~~~------ 308 (417)
T 2cfq_A 251 ---FATG-EQ-GTRVFGYVTTMGELLNASIMFFAPL----IINRIGGK-------NALLLAGTIMSVRIIGSSF------ 308 (417)
T ss_dssp ---SSSH-HH-HTHHHHHHHHHHHHHHHHHHHHHHH----HHHHHCHH-------HHHHHHHHHHHHHHHHHTT------
T ss_pred ---Hhcc-CC-ChhHHHHHHHHHHHHHHHHHHHHHH----HHHHhcHH-------HHHHHHHHHHHHHHHHHHH------
Confidence 1100 00 0000122333333444444444444 67776554 6667777777776555543
Q ss_pred hhhhhcCCcCCCCCCccchHHHHHHHHHHHHHHHHHHhhhhHHHhhhccCchhHHHHHHH-HHHHHHHHHHHHHHHHHHh
Q 045562 436 KTAEEYGLVDKPNVTIPMSVWWLIPQYALLGVSEAFTMVGLQEFFYDQVPTELRSVGLSL-YLSIFGVGSFLSSFLISAI 514 (525)
Q Consensus 436 ~~~~~~g~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi-~~~~~~lg~~lg~~~~~~i 514 (525)
..+.+.++...++.+++.....+..+.++.+..|++.||++.++ +++...+|+.++|.+.|++
T Consensus 309 ----------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l 372 (417)
T 2cfq_A 309 ----------------ATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNM 372 (417)
T ss_dssp ----------------CCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTH
T ss_pred ----------------hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHH
Confidence 12455555666667777777777778999999999999999999 5888999999999999988
Q ss_pred hhhcc
Q 045562 515 ENATG 519 (525)
Q Consensus 515 ~~~~~ 519 (525)
.+..|
T Consensus 373 ~~~~g 377 (417)
T 2cfq_A 373 YESIG 377 (417)
T ss_dssp HHHSH
T ss_pred HHhcC
Confidence 77543
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.47 E-value=1.3e-13 Score=143.57 Aligned_cols=181 Identities=11% Similarity=0.071 Sum_probs=149.9
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhc-cchHHHHHHHHHHH
Q 045562 39 WRSALFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSF-LGRYRAIIIASLIY 117 (525)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~-~Grr~~~~~~~~~~ 117 (525)
.|..+.+.+..++..+..+++..++|.|+++.+|.+..+.+.+.+...++..++.++.|+++||+ .|||+.+..+..+.
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~ 330 (451)
T 1pw4_A 251 NKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTL 330 (451)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHH
Confidence 35677788888888889999999999999988999999999999999999999999999999994 27888877776655
Q ss_pred H-HHHHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhh
Q 045562 118 V-LGLGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNW 196 (525)
Q Consensus 118 ~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 196 (525)
. ++.+++.+... .+.+.+++..++.|++.+...+...+++.|.+|+++ |++++++
T Consensus 331 ~~~~~~~~~~~~~------------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~------~g~~~~~ 386 (451)
T 1pw4_A 331 VTIATIVYWMNPA------------------GNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKA------AGTAAGF 386 (451)
T ss_dssp HHHHHHHTTSCCT------------------TCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTH------HHHHHHH
T ss_pred HHHHHHHHHHhcc------------------cCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhh------hhhHHHH
Confidence 5 55544443311 125666777788899888888888899999999988 9999999
Q ss_pred hHHHHhh-hhHHHhhhhhhcccccchhhhHHHHHHHHHHHHHHHHhcc
Q 045562 197 WYFGMCM-GTFVTLTVLNYIQDNLNWILGFGIPCILMVIALVVFLLGT 243 (525)
Q Consensus 197 ~~~~~~~-g~~~gp~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~ 243 (525)
.+...++ |..++|.+.+++.+..||+..|++.+++.+++.+..+...
T Consensus 387 ~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 434 (451)
T 1pw4_A 387 TGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVM 434 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999 9999999999999999999999988877777666555443
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=2.7e-12 Score=133.25 Aligned_cols=170 Identities=13% Similarity=0.090 Sum_probs=138.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHH-hccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHH
Q 045562 39 WRSALFIIGVEMAERFAYYGVSSNLITY-LTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIY 117 (525)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~y~~~~~l~~y-l~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~ 117 (525)
.|..+......++.....+.+..++|.| +++.+|.+..+.+...+...++..++.+++|+++||+ |||+++..+.++.
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~~~~~~ 335 (438)
T 3o7q_A 257 IRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-APHKVLAAYALIA 335 (438)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHH
Confidence 3456667777777788888888999999 8888899999999999999999999999999999998 9999999998888
Q ss_pred HHHHHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhh
Q 045562 118 VLGLGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWW 197 (525)
Q Consensus 118 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 197 (525)
.++.+++.+... ... ++..++.|++.+...|...++..|.+|++ ++.+.++.
T Consensus 336 ~~~~~~~~~~~~--------------------~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~ 387 (438)
T 3o7q_A 336 MALCLISAFAGG--------------------HVG-LIALTLCSAFMSIQYPTIFSLGIKNLGQD-------TKYGSSFI 387 (438)
T ss_dssp HHHHHHHHHCCH--------------------HHH-HHHHHHHHHHHTTHHHHHHHHHHSSCGGG-------HHHHHHHH
T ss_pred HHHHHHHHHcCC--------------------cHH-HHHHHHHHHHHHHHHHHHHHHHHhhcccc-------ccchhhHH
Confidence 888777666543 232 33447788888988999999999999844 45566665
Q ss_pred HHHHhhhhHHHhhhhhhcccccc-hhhhHHHHHHHHHHHHHH
Q 045562 198 YFGMCMGTFVTLTVLNYIQDNLN-WILGFGIPCILMVIALVV 238 (525)
Q Consensus 198 ~~~~~~g~~~gp~~~~~l~~~~g-~~~~f~~~~~~~~~~~~~ 238 (525)
. ...+|..++|.+.|++.+..| ++..|.+.+++.++.++.
T Consensus 388 ~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 428 (438)
T 3o7q_A 388 V-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIF 428 (438)
T ss_dssp H-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 5 567999999999999999999 999999876555444433
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=2.1e-12 Score=134.09 Aligned_cols=178 Identities=8% Similarity=0.073 Sum_probs=129.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCC---hHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHH
Q 045562 40 RSALFIIGVEMAERFAYYGVSSNLITYLTGPLAQS---TATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLI 116 (525)
Q Consensus 40 ~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s---~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~ 116 (525)
|..+......+.....++....++|.|+.+.++.. ....+...+...+...++.++.|+++||+ |||+++..+.++
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~l~~~~~~ 298 (417)
T 2cfq_A 220 PKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTI 298 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cHHHHHHHHHHH
Confidence 34444444444444455555667888887666532 34456666667777888899999999999 999999888877
Q ss_pred HHHHHHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhh
Q 045562 117 YVLGLGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNW 196 (525)
Q Consensus 117 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 196 (525)
.+++..++.+..+ .+.+++..++.+++.+...+...+++.|.+|++. |+++++.
T Consensus 299 ~~~~~~~~~~~~~--------------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~ 352 (417)
T 2cfq_A 299 MSVRIIGSSFATS--------------------ALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRF------SATIYLV 352 (417)
T ss_dssp HHHHHHHHTTCCS--------------------HHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHH------HHHHHHH
T ss_pred HHHHHHHHHHhcc--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH------HHHHHHH
Confidence 7776555544322 4555566666777766666677889999999988 9999998
Q ss_pred -hHHHHhhhhHHHhhhhhhcccccchhhhHHHHHHHHHHHHHHHHhccc
Q 045562 197 -WYFGMCMGTFVTLTVLNYIQDNLNWILGFGIPCILMVIALVVFLLGTK 244 (525)
Q Consensus 197 -~~~~~~~g~~~gp~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~ 244 (525)
++....+|..++|.++|++.++.|+...|.+.+++.+++.+..+...+
T Consensus 353 ~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~ 401 (417)
T 2cfq_A 353 CFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLS 401 (417)
T ss_dssp HHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhc
Confidence 577888999999999999998889999998888776666665554444
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.22 E-value=2.6e-11 Score=128.03 Aligned_cols=186 Identities=12% Similarity=0.087 Sum_probs=135.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHH-----HHHHH
Q 045562 42 ALFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAII-----IASLI 116 (525)
Q Consensus 42 ~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~-----~~~~~ 116 (525)
.+.+....+.....++....+++.|+.+.++.+..+.+.......+...++.++.|+++||+ |||+... .+.++
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~r~~~~~~~~~~~~~~ 363 (491)
T 4aps_A 285 YIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAW-KKNQPSSPTKFAVGLMF 363 (491)
T ss_dssp HHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHT-TTC---CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHH-hccCCCchHHHHHHHHH
Confidence 44444455555566666677888999988888877777777888888889999999999998 9876554 66666
Q ss_pred HHHHHHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhh
Q 045562 117 YVLGLGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNW 196 (525)
Q Consensus 117 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 196 (525)
..++..++......... +.+.+.+.+++..++.|++.+...+...+++.|.+|++. |+++.++
T Consensus 364 ~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~ 426 (491)
T 4aps_A 364 AGLSFLLMAIPGALYGT-----------SGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAF------NSQMMSM 426 (491)
T ss_dssp HHHHHTTTHHHHHHCCC-----------CTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTC------SSSSTHH
T ss_pred HHHHHHHHHHHHHhcCC-----------CCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHH------HHHHHHH
Confidence 66666665554311000 001124666777788999999989999999999999999 9999999
Q ss_pred hHHHHhhhhHHHhhhhhhcccccchhhhHHHHHHHHHHHHHHHHhcccce
Q 045562 197 WYFGMCMGTFVTLTVLNYIQDNLNWILGFGIPCILMVIALVVFLLGTKIY 246 (525)
Q Consensus 197 ~~~~~~~g~~~gp~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~ 246 (525)
.+...++|..++|.+.+++.+ .++...|.+.+++.+++.+..+...++.
T Consensus 427 ~~~~~~~g~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (491)
T 4aps_A 427 WFLSSSVGSALNAQLVTLYNA-KSEVAYFSYFGLGSVVLGIVLVFLSKRI 475 (491)
T ss_dssp HHHHHHHHHHHHHHHGGGGGG-SSTTHHHHHTHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998876 4677778777766666666555555443
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=2.7e-10 Score=120.14 Aligned_cols=184 Identities=13% Similarity=0.079 Sum_probs=123.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHHHH
Q 045562 41 SALFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVLG 120 (525)
Q Consensus 41 ~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~~~ 120 (525)
.........++..+..+....+...++.+..+.+............+...++.++++++.||+ |||+.++.+.....++
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~-Grr~~~~~~~~~~~~~ 355 (491)
T 4gc0_A 277 VIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMAIG 355 (491)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhh-cCcchhccchHHHHHH
Confidence 344344444444444333344444556667788888777777778888899999999999999 9999999998888777
Q ss_pred HHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhhHHH
Q 045562 121 LGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWYFG 200 (525)
Q Consensus 121 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 200 (525)
.+.+......... ..........+..+++. +..|..+.+.+|.+|++. |++++++.+..
T Consensus 356 ~~~l~~~~~~~~~--------------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~E~fPt~~------R~~~~g~~~~~ 414 (491)
T 4gc0_A 356 MFSLGTAFYTQAP--------------GIVALLSMLFYVAAFAM-SWGPVCWVLLSEIFPNAI------RGKALAIAVAA 414 (491)
T ss_dssp HHHHHHHHHTTCC--------------HHHHHHHHHHHHHHHHT-TTTHHHHHHHHHSSCTTT------HHHHHHHHHHH
T ss_pred HHHHHHHHhcccc--------------hHHHHHHHHHHHHHHHh-HHHHHHHHHHHHhCCHhH------HHHHHHHHHHH
Confidence 7666554321110 11222222222233333 344677889999999999 99999999999
Q ss_pred HhhhhHHHhhhhhhccc------ccchhhhHHHHHHHHHHHHHHHHhcccce
Q 045562 201 MCMGTFVTLTVLNYIQD------NLNWILGFGIPCILMVIALVVFLLGTKIY 246 (525)
Q Consensus 201 ~~~g~~~gp~~~~~l~~------~~g~~~~f~~~~~~~~~~~~~~~~~~~~~ 246 (525)
..+++.+++.+...+.+ ..++..+|++.+++.+++.+..++..||+
T Consensus 415 ~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PET 466 (491)
T 4gc0_A 415 QWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPET 466 (491)
T ss_dssp HHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCC
Confidence 99999988887766543 34566677777777677666666655543
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.99 E-value=1.3e-10 Score=118.04 Aligned_cols=165 Identities=11% Similarity=-0.036 Sum_probs=128.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHH-HH
Q 045562 40 RSALFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLI-YV 118 (525)
Q Consensus 40 ~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~-~~ 118 (525)
|..+......++.....+.+..++|.|+++.+|.+..+.+.+.....++..++.++.|+++||+ ||+ +..+... ..
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-~~~--~~~~~~~~~~ 275 (375)
T 2gfp_A 199 SGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-STL--MWQSVICCLL 275 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHH-HHH--HHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH--HHHHHHHHHH
Confidence 4566677777788888888899999999988999999999999999999999999999999998 873 2233322 22
Q ss_pred HHHHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhhH
Q 045562 119 LGLGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWY 198 (525)
Q Consensus 119 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 198 (525)
.+..+....... ..+.+.+++..++.|++.+...+...+++.|.+| ++ |+++.+..+
T Consensus 276 ~~~~~~~~~~~~----------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~------~g~~~g~~~ 332 (375)
T 2gfp_A 276 AGLLMWIPDWFG----------------VMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FL------AGTAGALVG 332 (375)
T ss_dssp TSSSSSHHHHHH----------------HHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HH------HHHHHHHHH
T ss_pred HHHHHHHHhhhc----------------cccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cc------cchHHHHHH
Confidence 222211111100 0124556677788899999999999999999998 66 999999999
Q ss_pred HHHhhhhHHHhhhhhhcccccchhhhHHHHHH
Q 045562 199 FGMCMGTFVTLTVLNYIQDNLNWILGFGIPCI 230 (525)
Q Consensus 199 ~~~~~g~~~gp~~~~~l~~~~g~~~~f~~~~~ 230 (525)
...++|..++|.+.+.+.++.+|...+.+.++
T Consensus 333 ~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~ 364 (375)
T 2gfp_A 333 GLQNIGSGVLASLSAMLPQTGQGSLGLLMTLM 364 (375)
T ss_dssp HHHHHHHHCCSTTCTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 99999999999999999888888887776543
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=98.08 E-value=2.2e-05 Score=83.08 Aligned_cols=115 Identities=14% Similarity=0.092 Sum_probs=91.4
Q ss_pred hhhhhhhhhHHHHHHHHhhhhhhhhhhhhh-ccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCcCCCCC
Q 045562 371 AASLQSFISLAIVLTIPIYDRIFVPIARTF-TRKPAGITMLQRIGTGMFLSAASMTGATLVEMKRLKTAEEYGLVDKPNV 449 (525)
Q Consensus 371 ~~~~~~~~~~~~i~~~~l~~~~~~~l~~r~-~~~~~~~~~~~~i~ig~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~ 449 (525)
.+++.....+...+..++.+. +.||+ ++| +.+.++.++.+++.+...+.
T Consensus 56 ~g~~~~~~~~~~~~~~~~~G~----l~dr~~g~r-------~~~~~~~~~~~~~~~~~~~~------------------- 105 (524)
T 2xut_A 56 AKDVFHSFVIGVYFFPLLGGW----IADRFFGKY-------NTILWLSLIYCVGHAFLAIF------------------- 105 (524)
T ss_dssp HHHHHHHHHHHHHHTHHHHHH----HHTTSSCSH-------HHHHHHHHHHHHHHHHHHHT-------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHhcch-------HHHHHHHHHHHHHHHHHHHh-------------------
Confidence 344555556666666666665 67776 554 77888888888888777752
Q ss_pred Cccc-hHHHHHHHHHHHHHHHHHHhhhhHHHhhhccCchhHHHHHHH---HHHHHHHHHHHHHHHHHHhhhhc
Q 045562 450 TIPM-SVWWLIPQYALLGVSEAFTMVGLQEFFYDQVPTELRSVGLSL---YLSIFGVGSFLSSFLISAIENAT 518 (525)
Q Consensus 450 ~~~~-~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi---~~~~~~lg~~lg~~~~~~i~~~~ 518 (525)
. +.+.+.+..++.|++.+...+...+++.+..|++.|++..++ ++....+|..+++.+.+.+.+..
T Consensus 106 ---~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~ 175 (524)
T 2xut_A 106 ---EHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNF 175 (524)
T ss_dssp ---SSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTS
T ss_pred ---cccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3 677788888999999999999999999999999999877777 88999999999999988877643
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 525 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.94 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.9 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.43 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.37 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.94 E-value=4.2e-25 Score=227.60 Aligned_cols=364 Identities=9% Similarity=-0.054 Sum_probs=224.5
Q ss_pred HHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhccCCCCccC
Q 045562 60 SSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVLGLGLLTLSAVLLSGSTSECQ 139 (525)
Q Consensus 60 ~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 139 (525)
.+.+.++++ ++|+|.++.+++.+++.++..++.+++|+++||+ |||+++..+.++..++.+++++......
T Consensus 44 ~~~~~p~~~-~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~-g~r~~~~~~~~~~~~~~~~~~~~~~~~~------- 114 (447)
T d1pw4a_ 44 FALAMPYLV-EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAAAVMLFMGFVPWATS------- 114 (447)
T ss_dssp HHHHHHHTT-SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHHHHHCHHHHS-------
T ss_pred HHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHHHHhhccccchhhh-------
Confidence 345556776 5899999999999999999999999999999999 9999999999999998888877643111
Q ss_pred CCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhhHHHHhhhhHHHhhhhhhccccc
Q 045562 140 NTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWYFGMCMGTFVTLTVLNYIQDNL 219 (525)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~gp~~~~~l~~~~ 219 (525)
+.+.+++.|++.|++.|...+...++++|.+|+++ |++++++.+....+|..++|.+++.+.+..
T Consensus 115 ---------~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~------r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~ 179 (447)
T d1pw4a_ 115 ---------SIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKE------RGGIVSVWNCAHNVGGGIPPLLFLLGMAWF 179 (447)
T ss_dssp ---------SSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTH------HHHHHHHHHHHHHHHHTSHHHHHHHHHHHT
T ss_pred ---------hHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhc------ccccccccccccchhhhhhhhhhhhHhhhh
Confidence 25788999999999999999999999999999998 999999999999999999999988766644
Q ss_pred -chhhhHHHHHHHHHHHHHHHHhcccceeecCCCCCCchhhhHHHHHHHHHhccccCCchhhhHhhhhCCCCCCCccchh
Q 045562 220 -NWILGFGIPCILMVIALVVFLLGTKIYRYSLKGEEKSPFLRIGQVFVTAVRNWRITPSAIALEEEARGTLPHQSSEQFK 298 (525)
Q Consensus 220 -g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (525)
+|++.|++.++..++..++.+...++.++..+....+. .+.+..+ +..++.
T Consensus 180 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~--------~~~~~~---- 231 (447)
T d1pw4a_ 180 NDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEE----------------YKNDYPD--------DYNEKA---- 231 (447)
T ss_dssp CCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTT----------------TCCC---------------------
T ss_pred hcccccchhhhhhHHHHHHHHHHhcccchhhcccchhhh----------------hhhhccc--------chhhcc----
Confidence 79999998887766655555554443322211110000 0000000 000000
Q ss_pred hhhHHHhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhccccCcccccccChhhhhhhh
Q 045562 299 FLNKALLASNGSKGYGKVCSVGEVEEAKALLRLVPIWTTCLVYAIVFAQSSTFFTKQGVTMDRSVVADFQIPAASLQSFI 378 (525)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (525)
..+...+....+.....+.++..... ....+..........+.+ +....+. .....+......
T Consensus 232 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~ 294 (447)
T d1pw4a_ 232 ----------EQELTAKQIFMQYVLPNKLLWYIAIA---NVFVYLLRYGILDWSPTY---LKEVKHF-ALDKSSWAYFLY 294 (447)
T ss_dssp --------------CCTHHHHHHTSSCHHHHHHHHH---HHHHHHHHHHHHHHHHHH---BTTBSCC-CHHHHHHHHHHH
T ss_pred ----------ccccchhhHHHHHHHcCchHHHHHHH---hhhhhhhhhcchhhhhhh---ccccccc-ccchhhhhhhcc
Confidence 00000000000001111122111111 111111111111111111 1111111 111123334444
Q ss_pred hHHHHHHHHhhhhhhhhhhhhhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCcCCCCCCccchHHHH
Q 045562 379 SLAIVLTIPIYDRIFVPIARTFTRKPAGITMLQRIGTGMFLSAASMTGATLVEMKRLKTAEEYGLVDKPNVTIPMSVWWL 458 (525)
Q Consensus 379 ~~~~i~~~~l~~~~~~~l~~r~~~~~~~~~~~~~i~ig~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l 458 (525)
.+..++...+.+. +.||.+++ ...........+..++....... ...+.+..
T Consensus 295 ~~~~~~~~~~~g~----~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~ 346 (447)
T d1pw4a_ 295 EYAGIPGTLLCGW----MSDKVFRG----NRGATGVFFMTLVTIATIVYWMN--------------------PAGNPTVD 346 (447)
T ss_dssp HHHHHHHHHHHHH----HHHHTSTT----CHHHHHHHHHHHHHHHHHHTTSC--------------------CTTCHHHH
T ss_pred hhhhhhhhhhhhh----hhhhcccc----ccccccchhHHHHHHHHHHHHhc--------------------ccccHHHH
Confidence 4455555555544 66776554 11222222222222222222110 02356667
Q ss_pred HHHHHHHHHHHHHHhhhhHHHhhhccCchhHHHHHHHHHHHHHH-HHHHHHHHHHHhhhhccC
Q 045562 459 IPQYALLGVSEAFTMVGLQEFFYDQVPTELRSVGLSLYLSIFGV-GSFLSSFLISAIENATGG 520 (525)
Q Consensus 459 ~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~~~~~~l-g~~lg~~~~~~i~~~~~~ 520 (525)
....++.+++.....+....+..+..|++.||+++|+.++...+ |..+++.+.|.+.+.+|.
T Consensus 347 ~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~ 409 (447)
T d1pw4a_ 347 MICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGW 409 (447)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh
Confidence 77778888888888889999999999999999999999888776 567789999999988764
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.90 E-value=7.5e-23 Score=206.16 Aligned_cols=371 Identities=10% Similarity=-0.042 Sum_probs=223.4
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHH
Q 045562 39 WRSALFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYV 118 (525)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~ 118 (525)
.|+.|.+....++..+....+.+++|.|+++++|.|..+.|++.+++.++..++.++.|+++||+ ||||+++++..+..
T Consensus 6 n~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~-grr~~l~~~~~~~~ 84 (417)
T d1pv7a_ 6 NTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGML 84 (417)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHH-TTCTHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchHHHHHHHHHHH
Confidence 35788888888888888888889999999999999999999999999999999999999999999 99999999988888
Q ss_pred HHHHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhhH
Q 045562 119 LGLGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWY 198 (525)
Q Consensus 119 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 198 (525)
++..++........ .....++.+.+.+.+.+...........+..++++. .+....+...
T Consensus 85 ~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~ 144 (417)
T d1pv7a_ 85 VMFAPFFIFIFGPL----------------LQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSR----RSNFEFGRAR 144 (417)
T ss_dssp HTHHHHHHHTHHHH----------------HHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHH----HHSCCHHHHH
T ss_pred HHHHHHHHhhhhhh----------------HHHHHHHHHHHhhhcccccccchhhcccccccchhh----hhHHHHHHHh
Confidence 87777776543110 012223334444444444333333333333332221 1566777788
Q ss_pred HHHhhhhHHHhhhhhhcccccchhhhHHHHHHHHHHHHHHHHhcccceeecCCCCCCchhhhHHHHHHHHHhccccCCch
Q 045562 199 FGMCMGTFVTLTVLNYIQDNLNWILGFGIPCILMVIALVVFLLGTKIYRYSLKGEEKSPFLRIGQVFVTAVRNWRITPSA 278 (525)
Q Consensus 199 ~~~~~g~~~gp~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (525)
.....+..++|.+++++.+. +|+..+........+.....+...++.+..++++ +.. +...
T Consensus 145 ~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-----------~~~~----- 205 (417)
T d1pv7a_ 145 MFGCVGWALGASIVGIMFTI-NNQFVFWLGSGCALILAVLLFFAKTDAPSSATVA--NAV-----------GANH----- 205 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHSSCCCSCSSSCSS--HHH-----------HSCC-----
T ss_pred hhhccccccccccccccccc-cccccccchhhHHHHHHHHHHHHhcccccchhhh--hhh-----------hhhc-----
Confidence 88889999999999998874 4555555444444444344444333222221111 000 0000
Q ss_pred hhhHhhhhCCCCCCCccchhhhhHHHhhcCCCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhc
Q 045562 279 IALEEEARGTLPHQSSEQFKFLNKALLASNGSKGYGKVCSVGEVEEAKALLRLVPIWTTCLVYAIVFAQSSTFFTKQGVT 358 (525)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (525)
++.......+ ....++.............. +.........+.. .
T Consensus 206 -------------~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~---~ 249 (417)
T d1pv7a_ 206 -------------SAFSLKLALE-------------------LFRQPKLWFLSLYVIGVSCT-YDVFDQQFANFFT---S 249 (417)
T ss_dssp -------------CCCCHHHHHH-------------------HTTSSHHHHHHHHHHHHHHH-HHHHHHHHHHHHT---T
T ss_pred -------------cccccccccc-------------------ccccccccchhhhhHHHHHH-HHhhhcccccccc---c
Confidence 0000000000 00000000001111111111 1111111111111 0
Q ss_pred cccCcccccccChhhhhhhhhHHHHHHHHhhhhhhhhhhhhhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 045562 359 MDRSVVADFQIPAASLQSFISLAIVLTIPIYDRIFVPIARTFTRKPAGITMLQRIGTGMFLSAASMTGATLVEMKRLKTA 438 (525)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~l~~r~~~~~~~~~~~~~i~ig~~l~~i~~~~~~~~~~~~~~~~ 438 (525)
.... ...... ..........+...+...+..++.||.++ .+.+.++.++.+++.+....
T Consensus 250 ~~~~----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~r~~~-------~~~~~~~~~~~~~~~~~~~~--------- 308 (417)
T d1pv7a_ 250 FFAT----GEQGTR-VFGYVTTMGELLNASIMFFAPLIINRIGG-------KNALLLAGTIMSVRIIGSSF--------- 308 (417)
T ss_dssp SSSC----HHHHHH-HHHHHHHHHHHHHHHHHTTHHHHHHHHCH-------HHHHHHHHHHHHHHHHHHHT---------
T ss_pred cccc----cccchh-hhcccccccccccccchhhhhhhhccccc-------ccchhhhHHHHHHhhhcccc---------
Confidence 0000 111111 11111222222233333334446777544 37788888888888777775
Q ss_pred hhcCCcCCCCCCccchHHHHHHHHHHHHHHHHHHhhhhHHHhhhccCchhHHHHHHHH-HHHHHHHHHHHHHHHHHhhhh
Q 045562 439 EEYGLVDKPNVTIPMSVWWLIPQYALLGVSEAFTMVGLQEFFYDQVPTELRSVGLSLY-LSIFGVGSFLSSFLISAIENA 517 (525)
Q Consensus 439 ~~~g~~~~~~~~~~~~~~~l~~~~~l~g~g~~~~~~~~~~~~~~~~P~~~rg~~~gi~-~~~~~lg~~lg~~~~~~i~~~ 517 (525)
..+.+.+....++.+++.+...+...+++.+..|++.||++.|+. ++...+|..+++.+.|++.+.
T Consensus 309 -------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~ 375 (417)
T d1pv7a_ 309 -------------ATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYES 375 (417)
T ss_dssp -------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHH
T ss_pred -------------ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346777888889999999999999999999999999999999985 567889999999999999988
Q ss_pred cc
Q 045562 518 TG 519 (525)
Q Consensus 518 ~~ 519 (525)
+|
T Consensus 376 ~g 377 (417)
T d1pv7a_ 376 IG 377 (417)
T ss_dssp HC
T ss_pred HC
Confidence 75
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.43 E-value=2.6e-13 Score=138.13 Aligned_cols=181 Identities=10% Similarity=0.029 Sum_probs=140.1
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHH
Q 045562 39 WRSALFIIGVEMAERFAYYGVSSNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYV 118 (525)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~ 118 (525)
.|..+.+....++.....+++..+++.|+.+.++.+..+.+.......+...++.+++|+++||+ +|++..........
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~ 326 (447)
T d1pw4a_ 248 NKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV-FRGNRGATGVFFMT 326 (447)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-STTCHHHHHHHHHH
T ss_pred CchHHHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhc-cccccccccchhHH
Confidence 45677777888888888899999999999999999999999999999999999999999999998 87765544443333
Q ss_pred HHHHHHHHhhhhccCCCCccCCCCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhhH
Q 045562 119 LGLGLLTLSAVLLSGSTSECQNTSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWWY 198 (525)
Q Consensus 119 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 198 (525)
+............ ..+.+..++..++.|++.++..+....+..|.+|++. |+++.++.+
T Consensus 327 ~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~------~g~~~g~~~ 385 (447)
T d1pw4a_ 327 LVTIATIVYWMNP---------------AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKA------AGTAAGFTG 385 (447)
T ss_dssp HHHHHHHHTTSCC---------------TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTH------HHHHHHHHH
T ss_pred HHHHHHHHHHhcc---------------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH------HHHHHHHHH
Confidence 3222222221100 1225666677778888888888888999999999988 999999988
Q ss_pred HHHhh-hhHHHhhhhhhcccccchhhhHHHHHHHHHHHHHHHHh
Q 045562 199 FGMCM-GTFVTLTVLNYIQDNLNWILGFGIPCILMVIALVVFLL 241 (525)
Q Consensus 199 ~~~~~-g~~~gp~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~ 241 (525)
...++ |..++|.+.|++.+.+||+..|++.+.+.+++.+++..
T Consensus 386 ~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 429 (447)
T d1pw4a_ 386 LFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV 429 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence 87776 56778999999999999999998877666655544433
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.37 E-value=2.3e-13 Score=135.63 Aligned_cols=157 Identities=8% Similarity=0.058 Sum_probs=127.5
Q ss_pred HHHHHHhccccCCChHHHHHHHHHHHHHHHhhhhhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhhhhccCCCCccCC
Q 045562 61 SNLITYLTGPLAQSTATAAENVNAWSGVASLLPLFGAFLADSFLGRYRAIIIASLIYVLGLGLLTLSAVLLSGSTSECQN 140 (525)
Q Consensus 61 ~~l~~yl~~~lg~s~~~~~~~~~~~~~~~~~~~~~~G~lsD~~~Grr~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 140 (525)
.....+..+..+.+....+.......++..++.++.|++.||+ |||+.+..+.++..++.+++.+..+
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~----------- 311 (417)
T d1pv7a_ 244 ANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTIMSVRIIGSSFATS----------- 311 (417)
T ss_dssp HHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHTCCC-----------
T ss_pred cccccccccccccchhhhcccccccccccccchhhhhhhhccc-ccccchhhhHHHHHHhhhccccccc-----------
Confidence 3333444444555666777777888888999999999999999 9999999999888888877776643
Q ss_pred CCcCCCchhHHHHHHHHHHHHhccccCccchhhhhhccccCCCcccccccceehhhh-HHHHhhhhHHHhhhhhhccccc
Q 045562 141 TSCSANQFQVIFFFFSLYLIALGQGGHKPCVQAFGADQFDSQHPLESKLKSSFFNWW-YFGMCMGTFVTLTVLNYIQDNL 219 (525)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~~~g~~~gp~~~~~l~~~~ 219 (525)
.+.+++..++.|++.+...+...+++.|.+|++. |+++++.. .....+|..++|.+.|++.|++
T Consensus 312 ---------~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~ 376 (417)
T d1pv7a_ 312 ---------ALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRF------SATIYLVCFCFFKQLAMIFMSVLAGNMYESI 376 (417)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGG------HHHHHHHHHTTTHHHHHHHHHHHHHHHHHHH
T ss_pred ---------cchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777788888999999999999999999999998 99999985 4566799999999999999999
Q ss_pred chhhhHHHHHHHHHHHHHHHHhccc
Q 045562 220 NWILGFGIPCILMVIALVVFLLGTK 244 (525)
Q Consensus 220 g~~~~f~~~~~~~~~~~~~~~~~~~ 244 (525)
||+.+|++.+++.++..++.++..+
T Consensus 377 g~~~~~~~~~~~~~~~~~~~~~~l~ 401 (417)
T d1pv7a_ 377 GFQGAYLVLGLVALGFTLISVFTLS 401 (417)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999998887776665555544444
|