Citrus Sinensis ID: 045568

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------38

MNMNIILVFLSVLSFLISLPRAYGDPWYEGHVCKDGMNFNSNSTYQSNLKLLLSTLRSNATHGSRDKISDGFYNATAGQDLDKVSGLFLCRGDVRRETCQDCVNFATSDLPQRCPVQKGAVIWYRECLLHYSNYSFLSTVDYVPYLCLANAQDSPNRSFGKQVRNLMDEAVNQALSTPKMFGTAKEDYSDFPTLYGLAQCTQNLSPDQCRNCLGDAISQLVECCKVRQGGQLLYPSCITRYELYPFYNNKLIASPTPAPPSPGSVTSSKGGEEIKTWKLWCKGEEALELMDPVIKQSCVAAELLKFIHIGLLCVQEDPADRPNMSSVAVMLASDAVPLPQPTQPAFSAGRSIARSGQSSSSDSKICSVNEVTLSDVSPR

ccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccccEEEEccccccccEEEEEEccccccHHHHHHHHHHHHHHHHHcccccccEEEEcccEEEEEcccccccccccccEEEEEccccccHHHHHHHHHHHHHHHHHHHHcccccEEEEEEcccccccEEEEEEccccccHHHHHHHHHHHHHHHHHHccccEEEEEEcccEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccHHHHHHHHHHEEEEEEccccccccHHHHHHHHccccccccccccccEEEccccccccccccccccccccccEEccccccc

ccHHHHHHHHHHHHHHHHHHHHHccccHHHcccccccccccccHHHHHHHHHHHHccccccccccccccccEEcccccccccEEEEEEEEcccccHHHHHHHHHHHHHHHHHHccccccEEEEEccEEEEEccccccccccccccEEEEccccccHHHHHHHHHHHHHHHHHHHccccccEEccccccccccEEEEEEEEcccccHHHHHHHHHHHHHHcHHHcccccccEEEcccEEEEEEEEccccccEEEEcccccccccccccccccHHHHHHHHHHccccHHHHccHHHcccccHHHHHHHHHHHHHHccccccccccHHHEEEEHccccEEcccccccEEEEcccccccccccccccccccccccEccccccc

MNMNIILVFLSVLSFLISlpraygdpwyeghvckdgmnfnsnsTYQSNLKLLLSTLRsnathgsrdkisdgfynatagqdldkvsglflcrgdvrretCQDCVNfatsdlpqrcpvqkgAVIWYRECLLhysnysflstvdyvpylclanaqdspnrsfGKQVRNLMDEAVNQAlstpkmfgtakedysdfptlyglaqctqnlspdqcrNCLGDAISQLVECCkvrqggqllypscitryelypfynnkliasptpappspgsvtsskggeeikTWKLWCKGEEALELMDPVIKQSCVAAELLKFIHIGLlcvqedpadrpnmSSVAVMLAsdavplpqptqpafsagrsiarsgqssssdskicsvnevtlsdvspr

MNMNIILVFLSVLSFLISLPRAYGDPWYEGHVCKDGMNFNSNSTYQSNLKLLLSTLRSNAThgsrdkisdgfynatagqdldkVSGLFLCRGDVRRETCQDCVNfatsdlpqrcpvQKGAVIWYRECLLHYSNYSFLSTVDYVPYLCLANAQDSPNRSFGKQVRNLMDEAVNQALSTPKMFGTAKEDYSDFPTLYGLAQCTQNLSPDQCRNCLGDAISQLVECCKVRQGGQLLYPSCITRYELYPFYNNKLIASPTPAPPSPGSvtsskggeeiKTWKLWCKGEEALELMDPVIKQSCVAAELLKFIHIGLLCVQEDPADRPNMSSVAVMLASDAVPLPQPTQPAFSAGRSIARsgqssssdskicsvnevtlsdvspr

MNMNiilvflsvlsflislPRAYGDPWYEGHVCKDGMNFNSNSTYQSNLKLLLSTLRSNATHGSRDKISDGFYNATAGQDLDKVSGLFLCRGDVRRETCQDCVNFATSDLPQRCPVQKGAVIWYRECLLHYSNYSFLSTVDYVPYLCLANAQDSPNRSFGKQVRNLMDEAVNQALSTPKMFGTAKEDYSDFPTLYGLAQCTQNLSPDQCRNCLGDAISQLVECCKVRQGGQLLYPSCITRYELYPFYNNKLIasptpappspgsvtssKGGEEIKTWKLWCKGEEALELMDPVIKQSCVAAELLKFIHIGLLCVQEDPADRPNMSSVAVMLASDAVPLPQPTQPAFsagrsiarsgqssssdskicsVNEVTLSDVSPR

***NIILVFLSVLSFLISLPRAYGDPWYEGHVCKDGMNFNSNSTYQSNLKLLLSTLR**********ISDGFYNATAGQDLDKVSGLFLCRGDVRRETCQDCVNFATSDLPQRCPVQKGAVIWYRECLLHYSNYSFLSTVDYVPYLCLANA****************************MFGTAKEDYSDFPTLYGLAQCTQNLSPDQCRNCLGDAISQLVECCKVRQGGQLLYPSCITRYELYPFYNNKLI*********************IKTWKLWCKGEEALELMDPVIKQSCVAAELLKFIHIGLLCVQ****************************************************************

**MNIILVFLSVLSFLISLPRAYGDPWYEGHVCKDGMNFNSNSTYQSNLKLLLSTLRSNATHGSRDKISDGFYNATAGQDLDKVSGLFLCRGDVRRETCQDCVNFATSDLPQRCPVQKGAVIWYRECLLHYSNYSFLSTVDYVPYLCLANAQDSPNRSFGKQVRNLMDEAVNQALSTPKMFGTAKEDYSDFPTLYGLAQCTQNLSPDQCRNCLGDAISQLVECCKVRQGGQLLYPSCITRYELYPFYNNKLIASPTPAPPSPGSVTSSKGGEEIKTWKLWCKGEEALELMDPVIKQSCVAAELLKFIHIGLLCVQEDPADRPNMSSVAVMLASDAV***QPTQ***************************VTLSDVSPR

MNMNIILVFLSVLSFLISLPRAYGDPWYEGHVCKDGMNFNSNSTYQSNLKLLLSTLRSNATHGSRDKISDGFYNATAGQDLDKVSGLFLCRGDVRRETCQDCVNFATSDLPQRCPVQKGAVIWYRECLLHYSNYSFLSTVDYVPYLCLANAQDSPNRSFGKQVRNLMDEAVNQALSTPKMFGTAKEDYSDFPTLYGLAQCTQNLSPDQCRNCLGDAISQLVECCKVRQGGQLLYPSCITRYELYPFYNNKLIASPT***************EEIKTWKLWCKGEEALELMDPVIKQSCVAAELLKFIHIGLLCVQEDPADRPNMSSVAVMLASDAVPLPQPTQPA********************CSVNEVTLSDVSPR

*NMNIILVFLSVLSFLISLPRAYGDPWYEGHVCKDGMNFNSNSTYQSNLKLLLSTLRSNATHGSRDKISDGFYNATAGQDLDKVSGLFLCRGDVRRETCQDCVNFATSDLPQRCPVQKGAVIWYRECLLHYSNYSFLSTVDYVPYLCLANAQDSPNRSFGKQVRNLMDEAVNQALSTPKMFGTAKEDYSDFPTLYGLAQCTQNLSPDQCRNCLGDAISQLVECCKVRQGGQLLYPSCITRYELYPFYNNKLIASPTPA***********GGEEIKTWKLWCKGEEALELMDPVIKQSCVAAELLKFIHIGLLCVQEDPADRPNMSSVAVMLASDAVPLPQPTQPAFSAGR*****************************

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

SSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

SSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

SSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		379	2.2.26 [Sep-21-2011]
O65468		676	Cysteine-rich receptor-li	yes	no	0.614	0.344	0.408	3e-47
Q9M0X5		675	Cysteine-rich receptor-li	no	no	0.643	0.361	0.404	9e-46
Q8GYA4		669	Cysteine-rich receptor-li	no	no	0.622	0.352	0.393	3e-42
O65482		830	Putative cysteine-rich re	no	no	0.593	0.271	0.394	1e-39
O65469		265	Putative cysteine-rich re	no	no	0.583	0.833	0.396	5e-39
Q8L7G3		659	Cysteine-rich receptor-li	no	no	0.583	0.335	0.417	1e-38
Q8W4G6		627	Cysteine-rich receptor-li	no	no	0.569	0.344	0.396	1e-37
O65479		666	Putative cysteine-rich re	no	no	0.614	0.349	0.386	3e-37
Q9C5S9		674	Cysteine-rich receptor-li	no	no	0.583	0.327	0.400	1e-35
Q8GWJ7		645	Cysteine-rich receptor-li	no	no	0.672	0.395	0.36	2e-35

>sp\|O65468\|CRK8_ARATH Cysteine-rich receptor-like protein kinase 8 OS=Arabidopsis thaliana GN=CRK8 PE=2 SV=2	Back alignment and function desciption

 Score =  189 bits (479), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 101/247 (40%), Positives = 150/247 (60%), Gaps = 14/247 (5%)

Query: 25  DPWYEGHVCKDGMNFNSNSTYQSNLKLLLSTLRS-NATHGSRDKISDGFYNATAGQDLDK 83
           +P+Y  H C +   ++SNSTY +NLK LLS+  S NA++      S GF N  AGQ  D+
Sbjct: 36  NPFYLNHDCPNRTTYSSNSTYSTNLKTLLSSFASRNASY------STGFQNIRAGQTPDR 89

Query: 84  VSGLFLCRGDVRRETCQDCVNFATSDLPQRCPVQKGAVIWYRECLLHYSNYSFLSTVDYV 143
           V+GLFLCRGD+  E C +CV F+ ++   RCP Q+ AV +Y EC+L YS+ +FLSTV Y 
Sbjct: 90  VTGLFLCRGDLSPEVCSNCVAFSVNESLTRCPNQREAVFYYEECILRYSHKNFLSTVTYE 149

Query: 144 PYLCLANAQD-----SPNRSFGKQVRNLMDEAVNQALSTPKMFGTAKEDYSDFPTLYGLA 198
             L + N  +     +    F   V++ M++A N+A ++ + F T K + +   TLYGL 
Sbjct: 150 GELIMRNPNNISSIQNQRDQFIDLVQSNMNQAANEAANSSRKFSTIKTELTSLQTLYGLV 209

Query: 199 QCTQNLSPDQCRNCLGDAISQLVECCKVRQGGQLLYPSCITRYELYPFYNNKLIASPTPA 258
           QCT +L+   C +CL  +I++++   ++  G +  +PSC +RYELY FYN   I +P+P 
Sbjct: 210 QCTPDLARQDCFSCLTSSINRMMPLFRI--GARQFWPSCNSRYELYAFYNETAIGTPSPP 267

Query: 259 PPSPGSV 265
           P  PGS 
Sbjct: 268 PLFPGST 274

Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: -

>sp\|Q9M0X5\|CRK25_ARATH Cysteine-rich receptor-like protein kinase 25 OS=Arabidopsis thaliana GN=CRK25 PE=2 SV=1	Back alignment and function description

>sp\|Q8GYA4\|CRK10_ARATH Cysteine-rich receptor-like protein kinase 10 OS=Arabidopsis thaliana GN=CRK10 PE=1 SV=3	Back alignment and function description

>sp\|O65482\|CRK23_ARATH Putative cysteine-rich receptor-like protein kinase 23 OS=Arabidopsis thaliana GN=CRK23 PE=2 SV=1	Back alignment and function description

>sp\|O65469\|CRK9_ARATH Putative cysteine-rich receptor-like protein kinase 9 OS=Arabidopsis thaliana GN=CRK9 PE=5 SV=1	Back alignment and function description

>sp\|Q8L7G3\|CRK7_ARATH Cysteine-rich receptor-like protein kinase 7 OS=Arabidopsis thaliana GN=CRK7 PE=2 SV=1	Back alignment and function description

>sp\|Q8W4G6\|CRK15_ARATH Cysteine-rich receptor-like protein kinase 15 OS=Arabidopsis thaliana GN=CRK15 PE=2 SV=2	Back alignment and function description

>sp\|O65479\|CRK20_ARATH Putative cysteine-rich receptor-like protein kinase 20 OS=Arabidopsis thaliana GN=CRK20 PE=2 SV=2	Back alignment and function description

>sp\|Q9C5S9\|CRK6_ARATH Cysteine-rich receptor-like protein kinase 6 OS=Arabidopsis thaliana GN=CRK6 PE=1 SV=1	Back alignment and function description

>sp\|Q8GWJ7\|CRK19_ARATH Cysteine-rich receptor-like protein kinase 19 OS=Arabidopsis thaliana GN=CRK19 PE=2 SV=2	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		379
255555031		674	ATP binding protein, putative [Ricinus c	0.572	0.321	0.454	2e-48
255555035		671	ATP binding protein, putative [Ricinus c	0.614	0.347	0.445	2e-47
359474717		663	PREDICTED: cysteine-rich receptor-like p	0.641	0.366	0.437	2e-47
297813907		340	hypothetical protein ARALYDRAFT_911789 [	0.646	0.720	0.409	5e-46
255555021		686	ATP binding protein, putative [Ricinus c	0.630	0.348	0.430	1e-45
356575777		671	PREDICTED: cysteine-rich receptor-like p	0.701	0.396	0.415	2e-45
152013452		676	RecName: Full=Cysteine-rich receptor-lik	0.614	0.344	0.408	2e-45
42567050		1262	cysteine-rich receptor-like protein kina	0.614	0.184	0.408	2e-45
3021268		1240	putative protein [Arabidopsis thaliana]	0.614	0.187	0.408	3e-45
224100081		468	predicted protein [Populus trichocarpa]	0.577	0.467	0.436	2e-44

>gi\|255555031\|ref\|XP_002518553.1\| ATP binding protein, putative [Ricinus communis] gi\|223542398\|gb\|EEF43940.1\| ATP binding protein, putative [Ricinus communis]	Back alignment and taxonomy information

 Score =  199 bits (506), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 104/229 (45%), Positives = 137/229 (59%), Gaps = 12/229 (5%)

Query: 25  DPWYEGHVCKDGMNFNSNSTYQSNLKLLLSTLRSNATHGSRDKISDGFYNATAGQDLDKV 84
           +P Y  HVC +   F  NSTYQ+NL  L  +L +NA +      S GFYN ++GQD D +
Sbjct: 27  EPVYLYHVCSNTTTFAPNSTYQTNLNQLFPSLSNNANN------SIGFYNRSSGQDPDDI 80

Query: 85  SGLFLCRGDVRRETCQDCVNFATSDLPQRCPVQKGAVIWYRECLLHYSNYSFLSTVDYVP 144
            GLFLCRGDV  + CQDCV FA+ D+ +RCP++K A++WY ECLLHY+N S  S +   P
Sbjct: 81  YGLFLCRGDVSTDVCQDCVTFASQDIVKRCPIEKVAIVWYDECLLHYANRSLYSIMAQEP 140

Query: 145 YLCLANA-----QDSPNRSFGKQVRNLMDEAVNQALSTPKMFGTAKEDYSDFPTLYGLAQ 199
            + L N      QD  N      +  L  EA + A S  K F    ++++ F  LY L Q
Sbjct: 141 GVFLLNVQNIADQDRFNNLLATTMGKLATEAASAA-SGEKKFAVKIDNFTAFEKLYSLVQ 199

Query: 200 CTQNLSPDQCRNCLGDAISQLVECCKVRQGGQLLYPSCITRYELYPFYN 248
           CT +LS   C  CL  AIS L  CC  ++GG++LYPSC  RYE+YPF+N
Sbjct: 200 CTPDLSNLDCGRCLQAAISNLPTCCDGKRGGRVLYPSCNIRYEVYPFFN 248

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|255555035\|ref\|XP_002518555.1\| ATP binding protein, putative [Ricinus communis] gi\|223542400\|gb\|EEF43942.1\| ATP binding protein, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|359474717\|ref\|XP_002267916.2\| PREDICTED: cysteine-rich receptor-like protein kinase 25-like isoform 1 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|297813907\|ref\|XP_002874837.1\| hypothetical protein ARALYDRAFT_911789 [Arabidopsis lyrata subsp. lyrata] gi\|297320674\|gb\|EFH51096.1\| hypothetical protein ARALYDRAFT_911789 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|255555021\|ref\|XP_002518548.1\| ATP binding protein, putative [Ricinus communis] gi\|223542393\|gb\|EEF43935.1\| ATP binding protein, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|356575777\|ref\|XP_003556013.1\| PREDICTED: cysteine-rich receptor-like protein kinase 25-like isoform 1 [Glycine max]	Back alignment and taxonomy information

>gi\|152013452\|sp\|O65468.2\|CRK8_ARATH RecName: Full=Cysteine-rich receptor-like protein kinase 8; Short=Cysteine-rich RLK8; Flags: Precursor	Back alignment and taxonomy information

>gi\|42567050\|ref\|NP_194047.2\| cysteine-rich receptor-like protein kinase 8 [Arabidopsis thaliana] gi\|332659317\|gb\|AEE84717.1\| cysteine-rich receptor-like protein kinase 8 [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|3021268\|emb\|CAA18463.1\| putative protein [Arabidopsis thaliana] gi\|7269163\|emb\|CAB79271.1\| putative protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|224100081\|ref\|XP_002334411.1\| predicted protein [Populus trichocarpa] gi\|222872074\|gb\|EEF09205.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		379
TAIR\|locus:2121651		676	CRK8 "cysteine-rich RLK (RECEP	0.580	0.325	0.405	2.4e-62
TAIR\|locus:2121676		669	CRK10 "cysteine-rich RLK (RECE	0.577	0.327	0.409	1.2e-61
TAIR\|locus:2121636		659	CRK7 "cysteine-rich RLK (RECEP	0.577	0.332	0.429	7e-61
TAIR\|locus:2115728		675	CRK25 "cysteine-rich RLK (RECE	0.580	0.325	0.431	4e-58
TAIR\|locus:2121626		830	CRK23 "cysteine-rich RLK (RECE	0.580	0.265	0.398	1.2e-52
TAIR\|locus:2121686		645	CRK19 "cysteine-rich RLK (RECE	0.562	0.330	0.405	1.4e-50
TAIR\|locus:2077147		676	CRK4 "cysteine-rich RLK (RECEP	0.546	0.306	0.411	8.8e-49
TAIR\|locus:2141762		665	CRK26 "cysteine-rich RLK (RECE	0.540	0.308	0.337	4.8e-43
TAIR\|locus:2141201		679	CRK29 "cysteine-rich RLK (RECE	0.543	0.303	0.321	9.2e-41
TAIR\|locus:2123111		669	CRK34 "cysteine-rich RLK (RECE	0.548	0.310	0.311	5e-40

TAIR\|locus:2121651 CRK8 "cysteine-rich RLK (RECEPTOR-like protein kinase) 8" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 452 (164.2 bits), Expect = 2.4e-62, Sum P(2) = 2.4e-62
 Identities = 95/234 (40%), Positives = 142/234 (60%)

Query:    25 DPWYEGHVCKDGMNFNSNSTYQSNLKLLLSTLRS-NATHGSRDKISDGFYNATAGQDLDK 83
             +P+Y  H C +   ++SNSTY +NLK LLS+  S NA++      S GF N  AGQ  D+
Sbjct:    36 NPFYLNHDCPNRTTYSSNSTYSTNLKTLLSSFASRNASY------STGFQNIRAGQTPDR 89

Query:    84 VSGLFLCRGDVRRETCQDCVNFATSDLPQRCPVQKGAVIWYRECLLHYSNYSFLSTVDYV 143
             V+GLFLCRGD+  E C +CV F+ ++   RCP Q+ AV +Y EC+L YS+ +FLSTV Y 
Sbjct:    90 VTGLFLCRGDLSPEVCSNCVAFSVNESLTRCPNQREAVFYYEECILRYSHKNFLSTVTYE 149

Query:   144 PYLCLANAQD-----SPNRSFGKQVRNLMDEAVNQALSTPKMFGTAKEDYSDFPTLYGLA 198
               L + N  +     +    F   V++ M++A N+A ++ + F T K + +   TLYGL 
Sbjct:   150 GELIMRNPNNISSIQNQRDQFIDLVQSNMNQAANEAANSSRKFSTIKTELTSLQTLYGLV 209

Query:   199 QCTQNLSPDQCRNCLGDAISQLVECCKVRQGGQLLYPSCITRYELYPFYNNKLI 252
             QCT +L+   C +CL  +I++++   ++  G +  +PSC +RYELY FYN   I
Sbjct:   210 QCTPDLARQDCFSCLTSSINRMMPLFRI--GARQFWPSCNSRYELYAFYNETAI 261

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR\|locus:2121676 CRK10 "cysteine-rich RLK (RECEPTOR-like protein kinase) 10" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2121636 CRK7 "cysteine-rich RLK (RECEPTOR-like protein kinase) 7" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2115728 CRK25 "cysteine-rich RLK (RECEPTOR-like protein kinase) 25" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2121626 CRK23 "cysteine-rich RLK (RECEPTOR-like protein kinase) 23" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2121686 CRK19 "cysteine-rich RLK (RECEPTOR-like protein kinase) 19" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2077147 CRK4 "cysteine-rich RLK (RECEPTOR-like protein kinase) 4" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2141762 CRK26 "cysteine-rich RLK (RECEPTOR-like protein kinase) 26" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2141201 CRK29 "cysteine-rich RLK (RECEPTOR-like protein kinase) 29" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2123111 CRK34 "cysteine-rich RLK (RECEPTOR-like protein kinase) 34" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00001153001	SubName- Full=Chromosome chr2 scaffold_113, whole genome shotgun sequence; (663 aa)
		(Vitis vinifera)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		379
pfam01657		106	pfam01657, Stress-antifung, Salt stress response/a	3e-30
pfam01657		106	pfam01657, Stress-antifung, Salt stress response/a	1e-20
pfam11883		48	pfam11883, DUF3403, Domain of unknown function (DU	5e-07

>gnl\|CDD\|216632 pfam01657, Stress-antifung, Salt stress response/antifungal	Back alignment and domain information

 Score =  111 bits (280), Expect = 3e-30
 Identities = 43/102 (42%), Positives = 55/102 (53%), Gaps = 4/102 (3%)

Query: 35  DGMNFNSNSTYQSNLKLLLSTLRSNATHGSRDKISDGFYNATAGQDLDKVSGLFLCRGDV 94
            G    +NST++SNL  LLS+L SNA          GF   T+G   D V GL  CRGD+
Sbjct: 9   SGNYTTANSTFESNLNALLSSLSSNAA----SSSGKGFAAGTSGAAPDTVYGLAQCRGDL 64

Query: 95  RRETCQDCVNFATSDLPQRCPVQKGAVIWYRECLLHYSNYSF 136
               C+ C+  A S+L + CP +KG  IWY  C L Y +Y F
Sbjct: 65  SASDCRSCLATAVSELRRCCPNKKGGRIWYDSCFLRYESYPF 106

This domain is often found in association with the kinase domains pfam00069 or pfam07714. In many proteins it is duplicated. It contains six conserved cysteines which are involved in disulphide bridges. It has a role in salt stress response and has antifungal activity. Length = 106

>gnl\|CDD\|216632 pfam01657, Stress-antifung, Salt stress response/antifungal	Back alignment and domain information

>gnl\|CDD\|221289 pfam11883, DUF3403, Domain of unknown function (DUF3403)	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		379
PF01657		106	Stress-antifung: Salt stress response/antifungal;	99.91
PF01657		106	Stress-antifung: Salt stress response/antifungal;	99.88
KOG1187		361	consensus Serine/threonine protein kinase [Signal	98.07
PF11883		48	DUF3403: Domain of unknown function (DUF3403); Int	95.61
PLN00113		968	leucine-rich repeat receptor-like protein kinase;	94.46
cd05038		284	PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the P	88.61
cd05081		284	PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of	84.99
cd05051		296	PTKc_DDR Catalytic domain of the Protein Tyrosine	84.28
cd05068		261	PTKc_Frk_like Catalytic domain of Fyn-related kina	84.1
cd05097		295	PTKc_DDR_like Catalytic domain of Discoidin Domain	83.76
cd05148		261	PTKc_Srm_Brk Catalytic domain of the Protein Tyros	83.25
cd05112		256	PTKc_Itk Catalytic domain of the Protein Tyrosine	82.88
cd05063		268	PTKc_EphR_A2 Catalytic domain of the Protein Tyros	82.72
cd05045		290	PTKc_RET Catalytic domain of the Protein Tyrosine	81.7
cd05094		291	PTKc_TrkC Catalytic domain of the Protein Tyrosine	81.63
cd08528		269	STKc_Nek10 Catalytic domain of the Protein Serine/	81.54
cd05053		293	PTKc_FGFR Catalytic domain of the Protein Tyrosine	81.44
cd05095		296	PTKc_DDR2 Catalytic domain of the Protein Tyrosine	81.44
cd05114		256	PTKc_Tec_Rlk Catalytic domain of the Protein Tyros	81.37
cd05052		263	PTKc_Abl Catalytic domain of the Protein Tyrosine	81.29
cd05048		283	PTKc_Ror Catalytic Domain of the Protein Tyrosine	81.28
cd05080		283	PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the	81.19
cd05050		288	PTKc_Musk Catalytic domain of the Protein Tyrosine	81.06
cd05072		261	PTKc_Lyn Catalytic domain of the Protein Tyrosine	80.86
cd05033		266	PTKc_EphR Catalytic domain of Ephrin Receptor Prot	80.53

>PF01657 Stress-antifung: Salt stress response/antifungal; InterPro: IPR002902 This domain is found in plants and has no known function	Back alignment and domain information

Probab=99.91  E-value=5.5e-25  Score=179.59  Aligned_cols=103  Identities=42%  Similarity=0.835  Sum_probs=78.2

Q ss_pred             CCCCC-C-CCcc-CCCChHHHHHHHHHHHHhhcccCCCCCCCCCCceecccCCCCCeEEEEEEccCCCCccchHHHHHHH
Q 045568           30 GHVCK-D-GMNF-NSNSTYQSNLKLLLSTLRSNATHGSRDKISDGFYNATAGQDLDKVSGLFLCRGDVRRETCQDCVNFA  106 (379)
Q Consensus        30 ~~~C~-~-~~~~-~~~s~~~~nl~~l~~~l~~~~~~~~~~~~~~~f~~~~~g~~~~~vygl~~C~~d~~~~~C~~C~~~a  106 (379)
                      |+.|+ + .++| +++++|++||+.||+.|+.+++.++    +.+|++.+.|.++++|||++||++|+++++|..||+.|
T Consensus         1 ~~~Cs~~~~~~~~~~~~~f~~~l~~ll~~l~~~a~~~~----~~~f~~~~~~~~~~~vYgl~qC~~Dls~~dC~~Cl~~a   76 (106)
T PF01657_consen    1 WHFCSSNTNNNYTTDNSTFEQNLNSLLSSLVSNAASSS----SKGFATGSAGSGPDTVYGLAQCRGDLSPSDCRACLADA   76 (106)
T ss_dssp             ---E---SSB----TT-THHHHHHHHHHHHHHHGGGTT-----TEEEEEE--ST---EEEEEEE-TTS-HHHHHHHHHHH
T ss_pred             CCcCCCCCCCCcCCCCchHHHHHHHHHHHHHHHHhhcc----ccCcEEeecCCCCCeEEEEEEcCCCCChhhhHHHHHHH
Confidence            57898 3 4567 6788899999999999999877620    25799998898999999999999999999999999999


Q ss_pred             HhhccccCCCCceEEEEcccccceeccCCc
Q 045568          107 TSDLPQRCPVQKGAVIWYRECLLHYSNYSF  136 (379)
Q Consensus       107 ~~~~~~~C~~~~~~~~~~~~C~lrys~~~f  136 (379)
                      +..+.+.|+..++|++|++.|+|||++++|
T Consensus        77 ~~~~~~~C~~~~g~~v~~~~C~lRY~~~~F  106 (106)
T PF01657_consen   77 VANISSCCPGSRGGRVWYDSCFLRYENYPF  106 (106)
T ss_dssp             HCCHHHHTTSBSSEEEEESSEEEEEESS--
T ss_pred             HHHHHHhCCCCceEEEECCCEEEEEECCCC
Confidence            999999999999999999999999999988

The structure of this domain is known and it is thought to be involved in antifungal responses in plants []. Two copies of this domain are also found together in cysteine-rich protein kinases and cysteine-rich repeat secretory proteins. The domain contains four conserved cysteines.; PDB: 3A2E_D.

>PF01657 Stress-antifung: Salt stress response/antifungal; InterPro: IPR002902 This domain is found in plants and has no known function	Back alignment and domain information

>KOG1187 consensus Serine/threonine protein kinase [Signal transduction mechanisms]	Back alignment and domain information

>PF11883 DUF3403: Domain of unknown function (DUF3403); InterPro: IPR021820 This functionally uncharacterised domain of around 50 amino acids is found in the C terminus of eukaryotic S-locus receptor kinase proteins	Back alignment and domain information

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional	Back alignment and domain information

>cd05038 PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases	Back alignment and domain information

>cd05081 PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3	Back alignment and domain information

>cd05051 PTKc_DDR Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors	Back alignment and domain information

>cd05068 PTKc_Frk_like Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases	Back alignment and domain information

>cd05097 PTKc_DDR_like Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases	Back alignment and domain information

>cd05148 PTKc_Srm_Brk Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk	Back alignment and domain information

>cd05112 PTKc_Itk Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase	Back alignment and domain information

>cd05063 PTKc_EphR_A2 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2	Back alignment and domain information

>cd05045 PTKc_RET Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein	Back alignment and domain information

>cd05094 PTKc_TrkC Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C	Back alignment and domain information

>cd08528 STKc_Nek10 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10	Back alignment and domain information

>cd05053 PTKc_FGFR Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors	Back alignment and domain information

>cd05095 PTKc_DDR2 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2	Back alignment and domain information

>cd05114 PTKc_Tec_Rlk Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase	Back alignment and domain information

>cd05052 PTKc_Abl Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase	Back alignment and domain information

>cd05048 PTKc_Ror Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors	Back alignment and domain information

>cd05080 PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2	Back alignment and domain information

>cd05050 PTKc_Musk Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase	Back alignment and domain information

>cd05072 PTKc_Lyn Catalytic domain of the Protein Tyrosine Kinase, Lyn	Back alignment and domain information

>cd05033 PTKc_EphR Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		379
3a2e_A		108	Crystal Structure Of Ginkbilobin-2, The Novel Antif		4e-04

>pdb|3A2E|A Chain A, Crystal Structure Of Ginkbilobin-2, The Novel Antifungal Protein From Ginkgo Biloba Seeds Length = 108

Back alignment and structure

Iteration: 1

Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 24/98 (24%), Positives = 44/98 (44%), Gaps = 1/98 (1%) Query: 150 NAQDSPNRS-FGKQVRNLMDEAVNQALSTPKMFGTAKEDYSDFPTLYGLAQCTQNLSPDQ 208 N Q P+ S F + +R ++ + + + T++ PT YG A C Q++S Sbjct: 11 NTQKIPSGSPFNRNLRAMLADLRQNTAFSGYDYKTSRAGSGGAPTAYGRATCKQSISQSD 70 Query: 209 CRNCLGDAISQLVECCKVRQGGQLLYPSCITRYELYPF 246 C CL + ++++ C G ++ C +YE F Sbjct: 71 CTACLSNLVNRIFSICNNAIGARVQLVDCFIQYEQRSF 108

PyMOL of 3a2e

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		379
2e79_A		108	Ginkbilobin-2; DUF26 fold, C-X8-C-X2-C motif, lect	3e-28
2e79_A		108	Ginkbilobin-2; DUF26 fold, C-X8-C-X2-C motif, lect	6e-24
3uim_A		326	Brassinosteroid insensitive 1-associated receptor;	2e-12
2nru_A		307	Interleukin-1 receptor-associated kinase 4; inhibi	1e-11
2qkw_B		321	Protein kinase; three-helix bundle motif, AVRPTO-P	4e-08
3soc_A		322	Activin receptor type-2A; structural genomics cons	2e-05
3g2f_A		336	Bone morphogenetic protein receptor type-2; kinase	5e-04

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3tl8_A* Length = 326	Back alignment and structure

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A* Length = 307	Back alignment and structure

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A* Length = 321	Back alignment and structure

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 2qlu_A* Length = 322	Back alignment and structure

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens} Length = 336	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		379
3a2e_A		108	Ginkbilobin-2; domain 26 unknown function (DUF26),	99.94
2e79_A		108	Ginkbilobin-2; DUF26 fold, C-X8-C-X2-C motif, lect	99.94
3a2e_A		108	Ginkbilobin-2; domain 26 unknown function (DUF26),	99.92
2e79_A		108	Ginkbilobin-2; DUF26 fold, C-X8-C-X2-C motif, lect	99.92
3uim_A		326	Brassinosteroid insensitive 1-associated receptor;	94.89
2qkw_B		321	Protein kinase; three-helix bundle motif, AVRPTO-P	92.65
3hmm_A		303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	89.44
3omv_A		307	RAF proto-oncogene serine/threonine-protein kinas;	89.41
4gt4_A		308	Tyrosine-protein kinase transmembrane receptor RO;	87.26
4aoj_A		329	High affinity nerve growth factor receptor; transf	86.69
2nru_A		307	Interleukin-1 receptor-associated kinase 4; inhibi	86.39
3gxj_A		303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	84.82
2y4i_B		319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	83.72
4asz_A		299	BDNF/NT-3 growth factors receptor; transferase, TR	82.95
2eva_A		307	TAK1 kinase - TAB1 chimera fusion protein; transfe	80.64

>3a2e_A Ginkbilobin-2; domain 26 unknown function (DUF26), C-X8-C-X2-C motif, antifungal protein, embryo-abundant protein (EAP), plant protein; 2.38A {Ginkgo biloba}	Back alignment and structure

Probab=99.94  E-value=6.2e-28  Score=196.20  Aligned_cols=106  Identities=21%  Similarity=0.471  Sum_probs=95.6

Q ss_pred             CCcccCCCCCCCCccCCCChHHHHHHHHHHHHhhcccCCCCCCCCCCceecccCC-CCCeEEEEEEccCCCCccchHHHH
Q 045568           25 DPWYEGHVCKDGMNFNSNSTYQSNLKLLLSTLRSNATHGSRDKISDGFYNATAGQ-DLDKVSGLFLCRGDVRRETCQDCV  103 (379)
Q Consensus        25 ~~~~~~~~C~~~~~~~~~s~~~~nl~~l~~~l~~~~~~~~~~~~~~~f~~~~~g~-~~~~vygl~~C~~d~~~~~C~~C~  103 (379)
                      ++.++++.|++ ++|+++++|++||+.||+.|+++++.+     ..+|++...|. ++++||||+|||+|+++++|..||
T Consensus         2 ~t~~v~~~Cn~-~~~t~~s~f~~nl~~ll~~L~~~a~~s-----~~~~~t~~~~~~~~~~vygl~qC~~Dls~~~C~~Cl   75 (108)
T 3a2e_A            2 NTAFVSSACNT-QKIPSGSPFNRNLRAMLADLRQNTAFS-----GYDYKTSRAGSGGAPTAYGRATCKQSISQSDCTACL   75 (108)
T ss_dssp             CCCEEEEEECS-SBCCTTCTHHHHHHHHHHHHHHHGGGT-----TSEEEEEECCSTTCCCEEEEEEECTTSCHHHHHHHH
T ss_pred             CcceeeeecCC-CccCCCChHHHHHHHHHHHHHhhCccc-----cCCceEeeccCCCCceEEEEEEEcCCCCHHHHHHHH
Confidence            56778899965 689999999999999999999988763     35577777664 459999999999999999999999


Q ss_pred             HHHHhhccccCCCCceEEEEcccccceeccCCc
Q 045568          104 NFATSDLPQRCPVQKGAVIWYRECLLHYSNYSF  136 (379)
Q Consensus       104 ~~a~~~~~~~C~~~~~~~~~~~~C~lrys~~~f  136 (379)
                      +.|+.++.+.||.+++|+||++.|+||||+++|
T Consensus        76 ~~a~~~~~~~C~~~~g~~i~~~~C~lRY~~~~F  108 (108)
T 3a2e_A           76 SNLVNRIFSICNNAIGARVQLVDCFIQYEQRSF  108 (108)
T ss_dssp             HHHHTTHHHHTTSBSSEEEEETTEEEEEESSCC
T ss_pred             HHHHHHHHHHCCCCceEEEECCCEEEEEeCCcC
Confidence            999999999999999999999999999999998

PyMOL of 3a2e

>3a2e_A Ginkbilobin-2; domain 26 unknown function (DUF26), C-X8-C-X2-C motif, antifungal protein, embryo-abundant protein (EAP), plant protein; 2.38A {Ginkgo biloba}	Back alignment and structure

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*	Back alignment and structure

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*	Back alignment and structure

>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*	Back alignment and structure

>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}	Back alignment and structure

>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A	Back alignment and structure

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}	Back alignment and structure

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*	Back alignment and structure

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}	Back alignment and structure

>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*	Back alignment and structure

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		379
d1mqba_		283	d.144.1.7 (A:) epha2 receptor tyrosine kinase {Hum	2e-05
d1vjya_		303	d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human	1e-04
d1lufa_		301	d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus n	3e-04
d1fmka3		285	d.144.1.7 (A:249-533) c-src tyrosine kinase {Human	4e-04
d1opja_		287	d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mou	4e-04
d1p4oa_		308	d.144.1.7 (A:) Insulin-like growth factor 1 recept	0.001
d1jpaa_		299	d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mou	0.001
d1qpca_		272	d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Hom	0.002
d1u59a_		285	d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Hum	0.002
d1r0pa_		311	d.144.1.7 (A:) Hepatocyte growth factor receptor,	0.002
d1u46a_		273	d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Hum	0.002
d1sm2a_		263	d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Hu	0.003
d1uwha_		276	d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens)	0.003
d1xbba_		277	d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human	0.004
d1t46a_		311	d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens	0.004

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 283	Back information, alignment and structure


class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (101), Expect = 2e-05
 Identities = 7/57 (12%), Positives = 20/57 (35%)

Query: 275 KTWKLWCKGEEALELMDPVIKQSCVAAELLKFIHIGLLCVQEDPADRPNMSSVAVML 331
           +         E ++ ++   +             + + C Q++ A RP  + +  +L
Sbjct: 211 ERPYWELSNHEVMKAINDGFRLPTPMDCPSAIYQLMMQCWQQERARRPKFADIVSIL 267

PyMOL of d1mqba_

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]} Length = 303	Back information, alignment and structure

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 301	Back information, alignment and structure

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 285	Back information, alignment and structure

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]} Length = 287	Back information, alignment and structure

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 308	Back information, alignment and structure

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 299	Back information, alignment and structure

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]} Length = 272	Back information, alignment and structure

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]} Length = 285	Back information, alignment and structure

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]} Length = 311	Back information, alignment and structure

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273	Back information, alignment and structure

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]} Length = 263	Back information, alignment and structure

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 276	Back information, alignment and structure

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]} Length = 277	Back information, alignment and structure

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 311	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		379
d1fmka3		285	c-src tyrosine kinase {Human (Homo sapiens) [TaxId	90.76
d1lufa_		301	Musk tyrosine kinase {Rat (Rattus norvegicus) [Tax	89.52
d1sm2a_		263	Tyrosine-protein kinase Itk/Tsk {Human (Homo sapie	88.78
d1mqba_		283	epha2 receptor tyrosine kinase {Human (Homo sapien	88.64
d1p4oa_		308	Insulin-like growth factor 1 receptor {Human (Homo	87.92
d1qpca_		272	Lymphocyte kinase (lck) {Human (Homo sapiens) [Tax	87.41
d1vjya_		303	Type I TGF-beta receptor R4 {Human (Homo sapiens)	86.86
d1r0pa_		311	Hepatocyte growth factor receptor, c-MET {Human (H	86.26
d1t46a_		311	c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]	86.05
d1jpaa_		299	ephb2 receptor tyrosine kinase {Mouse (Mus musculu	85.79
d1fgka_		299	Fibroblast growth factor receptor 1 {Human (Homo s	85.45
d1uwha_		276	B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}	84.94
d1fvra_		309	Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}	82.98
d1xbba_		277	Tyrosine-protein kinase SYK {Human (Homo sapiens)	82.49
d1opja_		287	Abelsone tyrosine kinase (abl) {Mouse (Mus musculu	82.23
d1byga_		262	Carboxyl-terminal src kinase (csk) {Human (Homo sa	82.09
d1ywna1		299	Vascular endothelial growth factor receptor 2 (kdr	81.23
d1k2pa_		258	Bruton's tyrosine kinase (Btk) {Human (Homo sapien	80.54

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.76  E-value=0.096  Score=46.28  Aligned_cols=30  Identities=17%  Similarity=0.432  Sum_probs=26.2

Q ss_pred             HHHHHHHhhcCCCCCCCCCHHHHHHHhccC
Q 045568          305 KFIHIGLLCVQEDPADRPNMSSVAVMLASD  334 (379)
Q Consensus       305 ~~~~ial~Cv~~~p~~RPtM~~Vv~~L~~~  334 (379)
                      .+.++...|.+.+|.+||+|.+|+++|+..
T Consensus       242 ~l~~li~~cl~~dP~~Rps~~~i~~~L~~~  271 (285)
T d1fmka3         242 SLHDLMCQCWRKEPEERPTFEYLQAFLEDY  271 (285)
T ss_dssp             HHHHHHHHHTCSSGGGSCCHHHHHHHHHTT
T ss_pred             HHHHHHHHHcccCHhHCcCHHHHHHHHhhh
Confidence            355677899999999999999999999864

PyMOL of d1fmka3

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure