Citrus Sinensis ID: 045644

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------27
MLAIPPRYIRPGQDLTTISDNNLDSRLLQSLFSEESTDSELSRLHFACKEWASFQLSYTCRFGQAFVISEEQKVDWIDIFFMTTLPIHLRKPHLFPKLPLYPLDFSLSEYFENGFQSMGMNYYPPCPQPEKVVGLTTNSDDSVLTMLLEINEVEGLQIKKDGKWIPVTPVPNAFVVNIGVVLEIVTNGTYRSIEHRVIVNSIQGRLSISTVYLVIYDGEMYPTSNLVSENNPLLFKRVTVEEYFRNLCARKLRGKSPLDALRIEHVQD
cccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccccccccccccccccccccccEEEEccEEccccccccccccccccccHHHHHHHHHHcccEEEEEEccccccccccccccccccccccEEEEEEccccccEEEEEccEEEEccccccEEEEEEccEEEEEEcccccccccEEEEcccccEEEEEEEEcccccccEEccccccccccccccccccHHHHHHHHHHccccccccccccccccccc
ccccccHcEcccccccccccccccEEEHHHHccccccHHHHHHHHHHHHHcccEEEEcEcccccEEEEEccccccHHHHEEEEccccHcccHHHcccccHHHHHHHHHHHHcccccEEEEccccccccccHEcccccccccccEEEEEEccccccEEEEEccEEEEcccccccEEEEEcHHHHHHcccccccccEEEcccccccEEEEEEEEccccccEEcccHHHcccccccccccccHHHHHHHHHHcccccccHHHHEEEccccc
mlaippryirpgqdlttisdnnlDSRLLQSlfseestdsELSRLHFACKEWASFQLSYTCRFGQafviseeqkvdwiDIFFMttlpihlrkphlfpklplypldfslseYFENGfqsmgmnyyppcpqpekvvglttnsddSVLTMLLEINEveglqikkdgkwipvtpvpnaFVVNIGVVLEIVtngtyrsiEHRVIVNSIQGRLSISTVYLVIydgemyptsnlvsennpllfkrVTVEEYFRNLCARklrgkspldaLRIEHVQD
mlaippryirpgqdlttisdnNLDSRLLQSLFSEESTDSELSRLHFACKEWASFQLSYTCRFGQAFVISEEQKVDWIDIFFMTTLPIHLRKPHLFPKLPLYPLDFSLSEYFENGFQSMGMNYYPPCPQPEKVVGLTTNSDDSVLTMLLEINEVEGLQIKKDGKWIPVTPVPNAFVVNIGVVLEIVTNGTYRSIEHRvivnsiqgrlSISTVYLVIYDGEMyptsnlvsennPLLFKRVTVEEYFRNLCarklrgkspldalriehvqd
MLAIPPRYIRPGQDLTTISDNNLDSRLLQSLFSEESTDSELSRLHFACKEWASFQLSYTCRFGQAFVISEEQKVDWIDIFFMTTLPIHLRKPHLFPKLPLYPLDFSLSEYFENGFQSMGMNYYPPCPQPEKVVGLTTNSDDSVLTMLLEINEVEGLQIKKDGKWIPVTPVPNAFVVNIGVVLEIVTNGTYRSIEHRVIVNSIQGRLSISTVYLVIYDGEMYPTSNLVSENNPLLFKRVTVEEYFRNLCARKLRGKSPLDALRIEHVQD
*****************************************SRLHFACKEWASFQLSYTCRFGQAFVISEEQKVDWIDIFFMTTLPIHLRKPHLFPKLPLYPLDFSLSEYFENGFQSMGMNYYPPCPQPEKVVGLTTNSDDSVLTMLLEINEVEGLQIKKDGKWIPVTPVPNAFVVNIGVVLEIVTNGTYRSIEHRVIVNSIQGRLSISTVYLVIYDGEMYPTSNLVSENNPLLFKRVTVEEYFRNLCARKLR***************
MLAIPPRYIRPGQDL****DNNLDSRLLQSLFSEES*DSELSRLHFACKEWASFQLSYTCRFGQAFVISEEQKVDWIDIFFMTTLPIHLRKPHLFPKLPLYPLDFSLSEYFENGFQSMGMNYYPPCPQPEKVVGLTTNSDDSVLTMLLEINEVEGLQIKKDGKWIPVTPVPNAFVVNIGVVLEIVTNGTYRSIEHRVIVNSIQGRLSISTVYLVIYDGEMYPTSNLVSENNPLLFKRVTVEEYFRNLCARKLRGKSPLDA*RIE****
MLAIPPRYIRPGQDLTTISDNNLDSRLLQSLF*********SRLHFACKEWASFQLSYTCRFGQAFVISEEQKVDWIDIFFMTTLPIHLRKPHLFPKLPLYPLDFSLSEYFENGFQSMGMNYYPPCPQPEKVVGLTTNSDDSVLTMLLEINEVEGLQIKKDGKWIPVTPVPNAFVVNIGVVLEIVTNGTYRSIEHRVIVNSIQGRLSISTVYLVIYDGEMYPTSNLVSENNPLLFKRVTVEEYFRNLCARKLRGKSPLDALRIEHVQD
MLAIPPRYIRPGQDLTTISDNNLDSRLLQSLFSEESTDSELSRLHFACKEWASFQLSYTCRFGQAFVISEEQKVDWIDIFFMTTLPIHLRKPHLFPKLPLYPLDFSLSEYFENGFQSMGMNYYPPCPQPEKVVGLTTNSDDSVLTMLLEINEVEGLQIKKDGKWIPVTPVPNAFVVNIGVVLEIVTNGTYRSIEHRVIVNSIQGRLSISTVYLVIYDGEMYPTSNLVSENNPLLFKRVTVEEYFRNLCARKLRGKSPLDALRIEH***
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MLAIPPRYIRPGQDLTTISDNNLDSRLLQSLFSEESTDSELSRLHFACKEWASFQLSYTCRFGQAFVISEEQKVDWIDIFFMTTLPIHLRKPHLFPKLPLYPLDFSLSEYFENGFQSMGMNYYPPCPQPEKVVGLTTNSDDSVLTMLLEINEVEGLQIKKDGKWIPVTPVPNAFVVNIGVVLEIVTNGTYRSIEHRVIVNSIQGRLSISTVYLVIYDGEMYPTSNLVSENNPLLFKRVTVEEYFRNLCARKLRGKSPLDALRIEHVQD
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query268 2.2.26 [Sep-21-2011]
Q39224358 Protein SRG1 OS=Arabidops yes no 0.966 0.723 0.447 1e-70
D4N502360 Codeine O-demethylase OS= N/A no 0.966 0.719 0.411 2e-60
D4N501364 Probable 2-oxoglutarate/F N/A no 0.966 0.711 0.418 3e-59
D4N500364 Thebaine 6-O-demethylase N/A no 0.970 0.714 0.407 2e-57
A2A1A0352 S-norcoclaurine synthase N/A no 0.966 0.735 0.312 9e-37
Q9LTH7366 1-aminocyclopropane-1-car no no 0.541 0.396 0.402 7e-25
Q9LTH8364 1-aminocyclopropane-1-car no no 0.541 0.398 0.395 2e-24
Q84MB3365 1-aminocyclopropane-1-car no no 0.529 0.389 0.397 5e-24
Q08506319 1-aminocyclopropane-1-car N/A no 0.712 0.598 0.318 7e-24
Q9MB94319 1-aminocyclopropane-1-car N/A no 0.503 0.423 0.391 7e-24
>sp|Q39224|SRG1_ARATH Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 SV=1 Back     alignment and function desciption
 Score =  266 bits (679), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 149/333 (44%), Positives = 194/333 (58%), Gaps = 74/333 (22%)

Query: 3   AIPPRYIRPGQDLTTISDNNLDSRL------LQSLFSEESTDSELSRLHFACKEWASFQL 56
            +PPRY+R  QD T + D++ D ++      ++ L S  + DSE+ +L FACKEW  FQL
Sbjct: 28  TVPPRYVRSDQDKTEV-DDDFDVKIEIPIIDMKRLCSSTTMDSEVEKLDFACKEWGFFQL 86

Query: 57  -------SYTCR----------------------------FGQAFVISEEQKVDWIDIFF 81
                  S+  +                            FGQAFV+SE+QK+DW D+FF
Sbjct: 87  VNHGIDSSFLDKVKSEIQDFFNLPMEEKKKFWQRPDEIEGFGQAFVVSEDQKLDWADLFF 146

Query: 82  MTTLPIHLRKPHLFPKLPLYPLDFSLSEYFE----------------------------- 112
            T  P+ LRKPHLFPKLPL P   +L  Y                               
Sbjct: 147 HTVQPVELRKPHLFPKLPL-PFRDTLEMYSSEVQSVAKILIAKMARALEIKPEELEKLFD 205

Query: 113 --NGFQSMGMNYYPPCPQPEKVVGLTTNSDDSVLTMLLEINEVEGLQIKKDGKWIPVTPV 170
             +  QSM MNYYPPCPQP++V+GLT +SD   LT+L+++N+VEGLQIKKDGKW+PV P+
Sbjct: 206 DVDSVQSMRMNYYPPCPQPDQVIGLTPHSDSVGLTVLMQVNDVEGLQIKKDGKWVPVKPL 265

Query: 171 PNAFVVNIGVVLEIVTNGTYRSIEHRVIVNSIQGRLSISTVYLVIYDGEMYPTSNLVSEN 230
           PNAF+VNIG VLEI+TNGTYRSIEHR +VNS + RLSI+T + V    E+ P  +LV   
Sbjct: 266 PNAFIVNIGDVLEIITNGTYRSIEHRGVVNSEKERLSIATFHNVGMYKEVGPAKSLVERQ 325

Query: 231 NPLLFKRVTVEEYFRNLCARKLRGKSPLDALRI 263
               FKR+T++EY   L +R L GK+ LDALRI
Sbjct: 326 KVARFKRLTMKEYNDGLFSRTLDGKAYLDALRI 358

Arabidopsis thaliana (taxid: 3702)
>sp|D4N502|DIOX3_PAPSO Codeine O-demethylase OS=Papaver somniferum GN=CODM PE=1 SV=1 Back     alignment and function description
>sp|D4N501|DIOX2_PAPSO Probable 2-oxoglutarate/Fe(II)-dependent dioxygenase OS=Papaver somniferum GN=DIOX2 PE=2 SV=1 Back     alignment and function description
>sp|D4N500|DIOX1_PAPSO Thebaine 6-O-demethylase OS=Papaver somniferum GN=T6ODM PE=1 SV=1 Back     alignment and function description
>sp|A2A1A0|NCS1_COPJA S-norcoclaurine synthase 1 OS=Coptis japonica GN=NCS1 PE=1 SV=1 Back     alignment and function description
>sp|Q9LTH7|ACH12_ARATH 1-aminocyclopropane-1-carboxylate oxidase homolog 12 OS=Arabidopsis thaliana GN=At5g59540 PE=2 SV=1 Back     alignment and function description
>sp|Q9LTH8|ACH11_ARATH 1-aminocyclopropane-1-carboxylate oxidase homolog 11 OS=Arabidopsis thaliana GN=At5g59530 PE=2 SV=1 Back     alignment and function description
>sp|Q84MB3|ACCH1_ARATH 1-aminocyclopropane-1-carboxylate oxidase homolog 1 OS=Arabidopsis thaliana GN=At1g06620 PE=2 SV=1 Back     alignment and function description
>sp|Q08506|ACCO1_PETHY 1-aminocyclopropane-1-carboxylate oxidase 1 OS=Petunia hybrida GN=ACO1 PE=1 SV=1 Back     alignment and function description
>sp|Q9MB94|ACCO_PRUMU 1-aminocyclopropane-1-carboxylate oxidase OS=Prunus mume GN=ACO1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query268
224061385355 predicted protein [Populus trichocarpa] 0.973 0.735 0.501 4e-80
255575141364 Leucoanthocyanidin dioxygenase, putative 0.985 0.725 0.471 1e-77
224061381359 predicted protein [Populus trichocarpa] 0.996 0.743 0.464 7e-76
358348748359 Protein SRG1 [Medicago truncatula] gi|35 0.977 0.729 0.462 3e-73
356556862353 PREDICTED: protein SRG1-like [Glycine ma 0.977 0.742 0.475 4e-73
225453297364 PREDICTED: protein SRG1 [Vitis vinifera] 0.977 0.719 0.464 8e-73
225462507366 PREDICTED: protein SRG1 [Vitis vinifera] 0.985 0.721 0.440 6e-72
297844634358 hypothetical protein ARALYDRAFT_889094 [ 0.977 0.731 0.449 2e-69
363807040358 uncharacterized protein LOC100777264 [Gl 0.966 0.723 0.459 4e-69
297734657316 unnamed protein product [Vitis vinifera] 0.880 0.746 0.475 4e-69
>gi|224061385|ref|XP_002300453.1| predicted protein [Populus trichocarpa] gi|222847711|gb|EEE85258.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  303 bits (777), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 165/329 (50%), Positives = 198/329 (60%), Gaps = 68/329 (20%)

Query: 3   AIPPRYIRPGQDLTTI-----SDNNLDSRLLQSLFSEESTDSELSRLHFACKEWASFQL- 56
           AIPPRYIRP QD  TI     S N +    +Q L  +ES DSEL++LH AC++W  FQL 
Sbjct: 27  AIPPRYIRPDQDQPTIIPSCASVNEIPVVDMQRLLDQESMDSELAKLHLACRDWGFFQLV 86

Query: 57  ----------------------------------SYTCRFGQAFVISEEQKVDWIDIFFM 82
                                                  FGQAFV+SEEQK+DW D+FFM
Sbjct: 87  NHEVSASLLEKVKTDVQDFFNLPMEEKKLFWQYPGEVEGFGQAFVVSEEQKLDWGDLFFM 146

Query: 83  TTLPIHLRKPHLFPKLPLYPLD----FSLS------------------------EYFENG 114
            T P+H RKPHLFPKLPL   D    FSL                         E F NG
Sbjct: 147 VTQPVHARKPHLFPKLPLPFRDTVEAFSLELKNLGITILGKMAKALKIEAEEVEELFGNG 206

Query: 115 FQSMGMNYYPPCPQPEKVVGLTTNSDDSVLTMLLEINEVEGLQIKKDGKWIPVTPVPNAF 174
           FQSM MNYYPPCPQP+KV+GLT +SD   LT+LL++NEVEGLQ+KKDGKW+PV P+PNAF
Sbjct: 207 FQSMRMNYYPPCPQPDKVIGLTPHSDAVGLTILLQVNEVEGLQVKKDGKWVPVKPLPNAF 266

Query: 175 VVNIGVVLEIVTNGTYRSIEHRVIVNSIQGRLSISTVYLVIYDGEMYPTSNLVSENNPLL 234
           + N+G +LEI+TNGTYRSIEHR  VNS + RLSI+T     YDG + P S+LV+E  P +
Sbjct: 267 IFNVGDILEIITNGTYRSIEHRATVNSEKERLSIATFLSPNYDGVIGPASSLVTEQTPAM 326

Query: 235 FKRVTVEEYFRNLCARKLRGKSPLDALRI 263
           FK  T EEYF+ L AR+L  KS LD +RI
Sbjct: 327 FKSTTTEEYFKGLFARELHEKSYLDVMRI 355

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255575141|ref|XP_002528475.1| Leucoanthocyanidin dioxygenase, putative [Ricinus communis] gi|223532084|gb|EEF33892.1| Leucoanthocyanidin dioxygenase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224061381|ref|XP_002300451.1| predicted protein [Populus trichocarpa] gi|222847709|gb|EEE85256.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|358348748|ref|XP_003638405.1| Protein SRG1 [Medicago truncatula] gi|355504340|gb|AES85543.1| Protein SRG1 [Medicago truncatula] Back     alignment and taxonomy information
>gi|356556862|ref|XP_003546739.1| PREDICTED: protein SRG1-like [Glycine max] Back     alignment and taxonomy information
>gi|225453297|ref|XP_002268288.1| PREDICTED: protein SRG1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|225462507|ref|XP_002269087.1| PREDICTED: protein SRG1 [Vitis vinifera] gi|297740615|emb|CBI30797.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|297844634|ref|XP_002890198.1| hypothetical protein ARALYDRAFT_889094 [Arabidopsis lyrata subsp. lyrata] gi|297336040|gb|EFH66457.1| hypothetical protein ARALYDRAFT_889094 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|363807040|ref|NP_001242069.1| uncharacterized protein LOC100777264 [Glycine max] gi|255645137|gb|ACU23067.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|297734657|emb|CBI16708.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query268
TAIR|locus:2020407358 SRG1 "senescence-related gene 0.585 0.438 0.584 8.6e-72
TAIR|locus:2122679353 AT4G25310 [Arabidopsis thalian 0.552 0.419 0.567 9.5e-69
TAIR|locus:2122669356 AT4G25300 [Arabidopsis thalian 0.552 0.415 0.540 5.7e-67
TAIR|locus:2020422361 AT1G17010 [Arabidopsis thalian 0.589 0.437 0.528 1.9e-64
TAIR|locus:2202980356 AT1G78550 [Arabidopsis thalian 0.585 0.441 0.503 6.1e-62
TAIR|locus:2089428364 LBO1 "LATERAL BRANCHING OXIDOR 0.578 0.425 0.439 1.1e-44
TAIR|locus:2149214348 AT5G20400 [Arabidopsis thalian 0.578 0.445 0.388 4.9e-38
TAIR|locus:2010242348 AT1G49390 [Arabidopsis thalian 0.496 0.382 0.413 3.3e-37
TAIR|locus:2169697371 AT5G05600 [Arabidopsis thalian 0.555 0.401 0.422 3.9e-35
TAIR|locus:2149907349 AT5G20550 [Arabidopsis thalian 0.548 0.421 0.393 4e-35
TAIR|locus:2020407 SRG1 "senescence-related gene 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 464 (168.4 bits), Expect = 8.6e-72, Sum P(3) = 8.6e-72
 Identities = 93/159 (58%), Positives = 120/159 (75%)

Query:   107 LSEYFEN--GFQSMGMNYYPPCPQPEKVVGLTTNSDDSVLTMLLEINEVEGLQIKKDGKW 164
             L + F++    QSM MNYYPPCPQP++V+GLT +SD   LT+L+++N+VEGLQIKKDGKW
Sbjct:   200 LEKLFDDVDSVQSMRMNYYPPCPQPDQVIGLTPHSDSVGLTVLMQVNDVEGLQIKKDGKW 259

Query:   165 IPVTPVPNAFVVNIGVVLEIVTNGTYRSIEHRVIVNSIQGRLSISTVYLVIYDGEMYPTS 224
             +PV P+PNAF+VNIG VLEI+TNGTYRSIEHR +VNS + RLSI+T + V    E+ P  
Sbjct:   260 VPVKPLPNAFIVNIGDVLEIITNGTYRSIEHRGVVNSEKERLSIATFHNVGMYKEVGPAK 319

Query:   225 NLVSENNPLLFKRVTVEEYFRNLCARKLRGKSPLDALRI 263
             +LV       FKR+T++EY   L +R L GK+ LDALRI
Sbjct:   320 SLVERQKVARFKRLTMKEYNDGLFSRTLDGKAYLDALRI 358
GO:0005737 "cytoplasm" evidence=ISM
GO:0009813 "flavonoid biosynthetic process" evidence=ISS
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=IEA;ISS
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0009737 "response to abscisic acid stimulus" evidence=RCA
GO:0009793 "embryo development ending in seed dormancy" evidence=RCA
GO:0009830 "cell wall modification involved in abscission" evidence=RCA
GO:0009845 "seed germination" evidence=RCA
GO:0010162 "seed dormancy process" evidence=RCA
GO:0010260 "organ senescence" evidence=IEP;RCA
GO:0016682 "oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor" evidence=ISS
TAIR|locus:2122679 AT4G25310 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2122669 AT4G25300 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2020422 AT1G17010 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2202980 AT1G78550 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2089428 LBO1 "LATERAL BRANCHING OXIDOREDUCTASE 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2149214 AT5G20400 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2010242 AT1G49390 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2169697 AT5G05600 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2149907 AT5G20550 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.14.110.766

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query268
PLN02216357 PLN02216, PLN02216, protein SRG1 3e-98
PLN02758361 PLN02758, PLN02758, oxidoreductase, 2OG-Fe(II) oxy 6e-62
PLN02393362 PLN02393, PLN02393, leucoanthocyanidin dioxygenase 2e-49
PLN03178360 PLN03178, PLN03178, leucoanthocyanidin dioxygenase 2e-40
PLN00417348 PLN00417, PLN00417, oxidoreductase, 2OG-Fe(II) oxy 1e-39
PLN02947374 PLN02947, PLN02947, oxidoreductase 1e-37
PLN02639337 PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxy 3e-37
PLN02912348 PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxy 4e-36
PLN03001262 PLN03001, PLN03001, oxidoreductase, 2OG-Fe(II) oxy 9e-36
PLN02254358 PLN02254, PLN02254, gibberellin 3-beta-dioxygenase 3e-33
PLN02750345 PLN02750, PLN02750, oxidoreductase, 2OG-Fe(II) oxy 6e-29
PLN02299321 PLN02299, PLN02299, 1-aminocyclopropane-1-carboxyl 5e-28
PLN02704335 PLN02704, PLN02704, flavonol synthase 5e-26
PLN02276361 PLN02276, PLN02276, gibberellin 20-oxidase 7e-26
PLN02904357 PLN02904, PLN02904, oxidoreductase 7e-25
pfam0317196 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase supe 3e-24
PLN02515358 PLN02515, PLN02515, naringenin,2-oxoglutarate 3-di 1e-22
PLN02403303 PLN02403, PLN02403, aminocyclopropanecarboxylate o 4e-22
COG3491322 COG3491, PcbC, Isopenicillin N synthase and relate 1e-19
PLN02485329 PLN02485, PLN02485, oxidoreductase 5e-17
PLN02156335 PLN02156, PLN02156, gibberellin 2-beta-dioxygenase 4e-16
PLN02984341 PLN02984, PLN02984, oxidoreductase, 2OG-Fe(II) oxy 2e-15
PLN02365300 PLN02365, PLN02365, 2-oxoglutarate-dependent dioxy 3e-15
PLN02997325 PLN02997, PLN02997, flavonol synthase 2e-13
PTZ00273320 PTZ00273, PTZ00273, oxidase reductase; Provisional 2e-12
PLN03002332 PLN03002, PLN03002, oxidoreductase, 2OG-Fe(II) oxy 1e-07
>gnl|CDD|215129 PLN02216, PLN02216, protein SRG1 Back     alignment and domain information 
 Score =  291 bits (746), Expect = 3e-98
 Identities = 149/331 (45%), Positives = 194/331 (58%), Gaps = 71/331 (21%)

Query: 3   AIPPRYIRPGQDLTTIS-DNNLDSRL----LQSLFSEESTDSELSRLHFACKEWASFQL- 56
            +PPRY+R  QD T I+ D+ L S +    ++ L S  + DSE+ +L FACKEW  FQL 
Sbjct: 28  TVPPRYVRSDQDKTEIAVDSGLSSEIPIIDMKRLCSSTAMDSEVEKLDFACKEWGFFQLV 87

Query: 57  ------SYTCR----------------------------FGQAFVISEEQKVDWIDIFFM 82
                 S+  +                            FGQAFV+SE+QK+DW D+FF+
Sbjct: 88  NHGIDSSFLDKVKSEIQDFFNLPMEEKKKLWQRPGEIEGFGQAFVVSEDQKLDWADMFFL 147

Query: 83  TTLPIHLRKPHLFPKLPLYPLDFSLSEY-------------------------FENGF-- 115
           T  P+ LRKPHLFPKLPL P   +L  Y                          E  F  
Sbjct: 148 TMQPVRLRKPHLFPKLPL-PFRDTLETYSAEVKSIAKILFAKMASALEIKPEEMEKLFDD 206

Query: 116 ---QSMGMNYYPPCPQPEKVVGLTTNSDDSVLTMLLEINEVEGLQIKKDGKWIPVTPVPN 172
              QS+ MNYYPPCPQP++V+GLT +SD   LT+LL++NEVEGLQIKKDGKW+ V P+PN
Sbjct: 207 DLGQSIRMNYYPPCPQPDQVIGLTPHSDAVGLTILLQVNEVEGLQIKKDGKWVSVKPLPN 266

Query: 173 AFVVNIGVVLEIVTNGTYRSIEHRVIVNSIQGRLSISTVYLVIYDGEMYPTSNLVSENNP 232
           A VVN+G +LEI+TNGTYRSIEHR +VNS + RLS++T +      E+ P  +LV     
Sbjct: 267 ALVVNVGDILEIITNGTYRSIEHRGVVNSEKERLSVATFHNTGMGKEIGPAKSLVERQKA 326

Query: 233 LLFKRVTVEEYFRNLCARKLRGKSPLDALRI 263
            LFK +T +EYF  L +R+L GK+ LDA+RI
Sbjct: 327 ALFKSLTTKEYFDGLFSRELDGKAYLDAMRI 357

Length = 357
>gnl|CDD|215404 PLN02758, PLN02758, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215220 PLN02393, PLN02393, leucoanthocyanidin dioxygenase like protein Back     alignment and domain information
>gnl|CDD|215614 PLN03178, PLN03178, leucoanthocyanidin dioxygenase; Provisional Back     alignment and domain information
>gnl|CDD|177810 PLN00417, PLN00417, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215510 PLN02947, PLN02947, oxidoreductase Back     alignment and domain information
>gnl|CDD|178245 PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178500 PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|166642 PLN03001, PLN03001, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215142 PLN02254, PLN02254, gibberellin 3-beta-dioxygenase Back     alignment and domain information
>gnl|CDD|178351 PLN02750, PLN02750, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215168 PLN02299, PLN02299, 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information
>gnl|CDD|166345 PLN02704, PLN02704, flavonol synthase Back     alignment and domain information
>gnl|CDD|215156 PLN02276, PLN02276, gibberellin 20-oxidase Back     alignment and domain information
>gnl|CDD|178492 PLN02904, PLN02904, oxidoreductase Back     alignment and domain information
>gnl|CDD|217403 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase superfamily Back     alignment and domain information
>gnl|CDD|178130 PLN02515, PLN02515, naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>gnl|CDD|178025 PLN02403, PLN02403, aminocyclopropanecarboxylate oxidase Back     alignment and domain information
>gnl|CDD|226022 COG3491, PcbC, Isopenicillin N synthase and related dioxygenases [General function prediction only] Back     alignment and domain information
>gnl|CDD|215267 PLN02485, PLN02485, oxidoreductase Back     alignment and domain information
>gnl|CDD|177816 PLN02156, PLN02156, gibberellin 2-beta-dioxygenase Back     alignment and domain information
>gnl|CDD|215534 PLN02984, PLN02984, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|177993 PLN02365, PLN02365, 2-oxoglutarate-dependent dioxygenase Back     alignment and domain information
>gnl|CDD|178576 PLN02997, PLN02997, flavonol synthase Back     alignment and domain information
>gnl|CDD|140299 PTZ00273, PTZ00273, oxidase reductase; Provisional Back     alignment and domain information
>gnl|CDD|178579 PLN03002, PLN03002, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 268
PLN02216357 protein SRG1 100.0
PLN02758361 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02947374 oxidoreductase 100.0
PLN02393362 leucoanthocyanidin dioxygenase like protein 100.0
PLN03178360 leucoanthocyanidin dioxygenase; Provisional 100.0
PLN02904357 oxidoreductase 100.0
PLN02254358 gibberellin 3-beta-dioxygenase 100.0
PLN02276361 gibberellin 20-oxidase 100.0
PLN02912348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02639337 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02515358 naringenin,2-oxoglutarate 3-dioxygenase 100.0
PLN02704335 flavonol synthase 100.0
PLN02750345 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN00417348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
KOG0143322 consensus Iron/ascorbate family oxidoreductases [S 100.0
PLN02299321 1-aminocyclopropane-1-carboxylate oxidase 100.0
PLN02997325 flavonol synthase 100.0
PTZ00273320 oxidase reductase; Provisional 100.0
PLN02156335 gibberellin 2-beta-dioxygenase 100.0
PLN02485329 oxidoreductase 100.0
PLN03002332 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02403303 aminocyclopropanecarboxylate oxidase 100.0
PLN02365300 2-oxoglutarate-dependent dioxygenase 100.0
PLN03001262 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
COG3491322 PcbC Isopenicillin N synthase and related dioxygen 100.0
PLN02984341 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PF0317198 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Ent 99.93
PF14226116 DIOX_N: non-haem dioxygenase in morphine synthesis 99.11
PLN03176120 flavanone-3-hydroxylase; Provisional 98.69
PF13640100 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; 96.45
PRK15401213 alpha-ketoglutarate-dependent dioxygenase AlkB; Pr 95.44
TIGR00568169 alkb DNA alkylation damage repair protein AlkB. Pr 90.71
smart00702178 P4Hc Prolyl 4-hydroxylase alpha subunit homologues 90.15
PRK05467226 Fe(II)-dependent oxygenase superfamily protein; Pr 86.72
PF12851171 Tet_JBP: Oxygenase domain of the 2OGFeDO superfami 85.72
>PLN02216 protein SRG1 Back     alignment and domain information 
Probab=100.00  E-value=5.9e-68  Score=492.70  Aligned_cols=263  Identities=54%  Similarity=0.913  Sum_probs=228.9

Q ss_pred             CCCCCCCccCCCCCCCCcc-Ccc--ccc-cc-ccccccccccHHHHHHHHHHHhhcceEEEec-----------------
Q 045644            1 MLAIPPRYIRPGQDLTTIS-DNN--LDS-RL-LQSLFSEESTDSELSRLHFACKEWASFQLSY-----------------   58 (268)
Q Consensus         1 ~~~vP~~y~~p~~~~~~~~-~~~--~~~-~I-l~~l~~~~~~~~~~~~l~~Ac~~~GFF~l~n-----------------   58 (268)
                      +.+||++||+|++++|.+. ..+  ..+ +| |+.+.+++.+++++++|++||++||||||+|                 
T Consensus        26 ~~~~p~~~v~p~~~~~~~~~~~~~~~~iPvIDls~~~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~~  105 (357)
T PLN02216         26 ITTVPPRYVRSDQDKTEIAVDSGLSSEIPIIDMKRLCSSTAMDSEVEKLDFACKEWGFFQLVNHGIDSSFLDKVKSEIQD  105 (357)
T ss_pred             CCCCCHhhCcCcccCCccccccCcCCCCCeEEChhccCCccHHHHHHHHHHHHHHCcEEEEECCCCCHHHHHHHHHHHHH
Confidence            3589999999999988542 111  233 56 9888776543446799999999999999999                 


Q ss_pred             ------------------ceecccccccccccccccccccccccCCcCCCCCCCCCCCCCCCCh----------------
Q 045644           59 ------------------TCRFGQAFVISEEQKVDWIDIFFMTTLPIHLRKPHLFPKLPLYPLD----------------  104 (268)
Q Consensus        59 ------------------~~gy~~~~~~~~~~~~d~~e~~~~~~~p~~~~~~n~wP~~~~~fr~----------------  104 (268)
                                        .+||+.......+++.||+|.|++...|.....+|.||+.|++||+                
T Consensus       106 FF~LP~eeK~k~~~~~~~~~Gy~~~~~~~~~~~~d~~e~~~~~~~p~~~~~~~~WP~~p~~fr~~~~~y~~~~~~l~~~l  185 (357)
T PLN02216        106 FFNLPMEEKKKLWQRPGEIEGFGQAFVVSEDQKLDWADMFFLTMQPVRLRKPHLFPKLPLPFRDTLETYSAEVKSIAKIL  185 (357)
T ss_pred             HHcCCHHHHHhhhcCCCCccccCccccccccccCCceeeeeeeccCcccccchhcccchHHHHHHHHHHHHHHHHHHHHH
Confidence                              3567655444445678999999988777666778999998889998                


Q ss_pred             ------------hhHHHhhhC-CCceEEEeecCCCCCCCceeeeeeccCCCceEEEeeeCCCCceEEeeCCeEEEecCCC
Q 045644          105 ------------FSLSEYFEN-GFQSMGMNYYPPCPQPEKVVGLTTNSDDSVLTMLLEINEVEGLQIKKDGKWIPVTPVP  171 (268)
Q Consensus       105 ------------~~f~~~~~~-~~~~~r~~~Yp~~~~~~~~~g~~~HtD~~~lTlL~q~d~v~GLqV~~~g~W~~v~p~~  171 (268)
                                  ++|.+++.. ..+.||++|||||++++..+|+++|||+|+||||+|+++++||||+++|+|++|+|++
T Consensus       186 l~~la~~Lgl~~~~f~~~~~~~~~~~lRl~~YPp~p~~~~~~G~~~HtD~g~lTlL~q~~~v~GLQV~~~g~Wi~V~p~p  265 (357)
T PLN02216        186 FAKMASALEIKPEEMEKLFDDDLGQSIRMNYYPPCPQPDQVIGLTPHSDAVGLTILLQVNEVEGLQIKKDGKWVSVKPLP  265 (357)
T ss_pred             HHHHHHHcCCCHHHHHHHhccCchheeEEeecCCCCCcccccCccCcccCceEEEEEecCCCCceeEEECCEEEECCCCC
Confidence                        567777765 3568999999999999889999999999999999996579999999999999999999


Q ss_pred             CeEEEehhhHHHHHhcCcccccccccccCCCCCcceeEEEeeeCCCeEEecCCcccCCCCCCCCCcccHHHHHHHHHHhc
Q 045644          172 NAFVVNIGVVLEIVTNGTYRSIEHRVIVNSIQGRLSISTVYLVIYDGEMYPTSNLVSENNPLLFKRVTVEEYFRNLCARK  251 (268)
Q Consensus       172 ~~~vVniGd~l~~~TnG~~kS~~HRV~~~~~~~R~Si~~F~~p~~d~~i~p~~~~v~~~~p~~y~~~~~~ey~~~~~~~~  251 (268)
                      |+|||||||+||+||||+|||++|||++++.++|||++||+.|+.|++|+|+++|+++++|++|++++++||++.++++.
T Consensus       266 galvVNiGD~L~~~TNG~~kS~~HRVv~~~~~~R~Si~~F~~P~~d~~i~p~~~lv~~~~p~~Y~~~t~~ey~~~~~~~~  345 (357)
T PLN02216        266 NALVVNVGDILEIITNGTYRSIEHRGVVNSEKERLSVATFHNTGMGKEIGPAKSLVERQKAALFKSLTTKEYFDGLFSRE  345 (357)
T ss_pred             CeEEEEcchhhHhhcCCeeeccCceeecCCCCCEEEEEEEecCCCCCeEeCcHHHcCCCCCCCCCCcCHHHHHHHHHhcc
Confidence            99999999999999999999999999998889999999999999999999999999999999999999999999999998


Q ss_pred             CCCCCccccccc
Q 045644          252 LRGKSPLDALRI  263 (268)
Q Consensus       252 ~~~~~~ld~~~~  263 (268)
                      ..+++.++.+||
T Consensus       346 ~~~~~~~~~~~~  357 (357)
T PLN02216        346 LDGKAYLDAMRI  357 (357)
T ss_pred             cCCcchhhhhcC
Confidence            889999998875

>PLN02758 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02947 oxidoreductase Back     alignment and domain information
>PLN02393 leucoanthocyanidin dioxygenase like protein Back     alignment and domain information
>PLN03178 leucoanthocyanidin dioxygenase; Provisional Back     alignment and domain information
>PLN02904 oxidoreductase Back     alignment and domain information
>PLN02254 gibberellin 3-beta-dioxygenase Back     alignment and domain information
>PLN02276 gibberellin 20-oxidase Back     alignment and domain information
>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>PLN02704 flavonol synthase Back     alignment and domain information
>PLN02750 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN00417 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>KOG0143 consensus Iron/ascorbate family oxidoreductases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only] Back     alignment and domain information
>PLN02299 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information
>PLN02997 flavonol synthase Back     alignment and domain information
>PTZ00273 oxidase reductase; Provisional Back     alignment and domain information
>PLN02156 gibberellin 2-beta-dioxygenase Back     alignment and domain information
>PLN02485 oxidoreductase Back     alignment and domain information
>PLN03002 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02403 aminocyclopropanecarboxylate oxidase Back     alignment and domain information
>PLN02365 2-oxoglutarate-dependent dioxygenase Back     alignment and domain information
>PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>COG3491 PcbC Isopenicillin N synthase and related dioxygenases [General function prediction only] Back     alignment and domain information
>PLN02984 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit Back     alignment and domain information
>PF14226 DIOX_N: non-haem dioxygenase in morphine synthesis N-terminal; PDB: 3OOX_A 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A Back     alignment and domain information
>PLN03176 flavanone-3-hydroxylase; Provisional Back     alignment and domain information
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A Back     alignment and domain information
>PRK15401 alpha-ketoglutarate-dependent dioxygenase AlkB; Provisional Back     alignment and domain information
>TIGR00568 alkb DNA alkylation damage repair protein AlkB Back     alignment and domain information
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues Back     alignment and domain information
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional Back     alignment and domain information
>PF12851 Tet_JBP: Oxygenase domain of the 2OGFeDO superfamily ; InterPro: IPR024779 TETs are 2OG- and Fe(II)-dependent oxygenases that catalyse the conversion of 5 methyl-Cytosine (5-MC) to 5-hydroxymethyl-cytosine (hmC) in cultured cells and in vitro [] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query268
1w9y_A319 The Structure Of Acc Oxidase Length = 319 2e-24
2brt_A355 Anthocyanidin Synthase From Arabidopsis Thaliana Co 2e-19
1gp5_A356 Anthocyanidin Synthase From Arabidopsis Thaliana Co 2e-19
1gp4_A356 Anthocyanidin Synthase From Arabidopsis Thaliana (S 1e-18
3oox_A312 Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenas 2e-10
3on7_A280 Crystal Structure Of A Putative Oxygenase (So_2589) 3e-05
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase Length = 319 Back     alignment and structure 
Iteration: 1

 Score =  109 bits (272), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 71/223 (31%), Positives = 109/223 (48%), Gaps = 32/223 (14%)
Query: 67  VISEEQKVDWIDIFFMTTLPIH--LRKPHLFPKLPLYPLDFS-----LSE---------- 109
           V +E    DW   FF+  LPI      P L  +      DF+     L+E          
Sbjct: 77  VQAEVTDXDWESTFFLKHLPISNISEVPDLDEEYREVXRDFAKRLEKLAEELLDLLCENL 136
Query: 110 -----YFENGF-QSMGMNY------YPPCPQPEKVVGLTTNSDDSVLTMLLEINEVEGLQ 157
                Y +N F  S G N+      YPPCP+P+ + GL  ++D   + +L + ++V GLQ
Sbjct: 137 GLEKGYLKNAFYGSKGPNFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQ 196
Query: 158 IKKDGKWIPVTPVPNAFVVNIGVVLEIVTNGTYRSIEHRVIVNSIQGRLSISTVYLVIYD 217
           + KDG+WI V P  ++ VVN+G  LE++TNG Y+S+ HRVI      R S+++ Y    D
Sbjct: 197 LLKDGQWIDVPPXRHSIVVNLGDQLEVITNGKYKSVXHRVIAQKDGARXSLASFYNPGSD 256
Query: 218 GEMYPTSNLV---SENNPLLFKRVTVEEYFRNLCARKLRGKSP 257
             +YP   LV   +E N  ++ +   ++Y +     K + K P
Sbjct: 257 AVIYPAPALVEKEAEENKQVYPKFVFDDYXKLYAGLKFQAKEP 299
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed With Naringenin Length = 355 Back     alignment and structure
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed With Trans-Dihydroquercetin Length = 356 Back     alignment and structure
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana (Selenomethionine Substituted) Length = 356 Back     alignment and structure
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase Family Protein (Cc_0200) From Caulobacter Crescentus At 1.44 A Resolution Length = 312 Back     alignment and structure
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From Shewanella Oneidensis At 2.20 A Resolution Length = 280 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query268
1gp6_A356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 2e-82
1w9y_A319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 5e-77
1dcs_A311 Deacetoxycephalosporin C synthase; ferrous oxygena 5e-37
1odm_A331 Isopenicillin N synthase; antibiotic biosynthesis, 1e-32
3on7_A280 Oxidoreductase, iron/ascorbate family; structural 1e-29
3oox_A312 Putative 2OG-Fe(II) oxygenase family protein; stru 2e-26
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-04
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Length = 356 Back     alignment and structure
 Score =  250 bits (641), Expect = 2e-82
 Identities = 86/345 (24%), Positives = 136/345 (39%), Gaps = 92/345 (26%)

Query: 4   IPPRYIRPGQDLTTISDNNLDSRL----------LQSLFSEESTDSE--LSRLHFACKEW 51
           IP  YIRP ++L +I+D  L+ +           L+++ S++    E  +  L  A  +W
Sbjct: 18  IPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKASLDW 77

Query: 52  ASFQL-------------------------------------SYTCRFGQAFVISEEQKV 74
               L                                          +G     +   ++
Sbjct: 78  GVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQL 137

Query: 75  DWIDIFFMTTLPIHLRKPHLFPKLPLYPLDF--SLSEY---------------------- 110
           +W D FF    P   R   ++PK P    D+  + SEY                      
Sbjct: 138 EWEDYFFHLAYPEEKRDLSIWPKTPS---DYIEATSEYAKCLRLLATKVFKALSVGLGLE 194

Query: 111 ----------FENGFQSMGMNYYPPCPQPEKVVGLTTNSDDSVLTMLLEINEVEGLQIKK 160
                      E     M +NYYP CPQPE  +G+  ++D S LT +L  N V GLQ+  
Sbjct: 195 PDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILH-NMVPGLQLFY 253

Query: 161 DGKWIPVTPVPNAFVVNIGVVLEIVTNGTYRSIEHRVIVNSIQGRLSISTVYLVIYDGEM 220
           +GKW+    VP++ V++IG  LEI++NG Y+SI HR +VN  + R+S +       D  +
Sbjct: 254 EGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIV 313

Query: 221 Y-PTSNLVSENNPLLFKRVTVEEYFRNLCARKLRGKSPLDALRIE 264
             P   +VS  +P  F   T  ++       KL GK   + +  +
Sbjct: 314 LKPLPEMVSVESPAKFPPRTFAQHIE----HKLFGKEQEELVSEK 354
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Length = 319 Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Length = 311 Back     alignment and structure
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Length = 331 Back     alignment and structure
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Length = 280 Back     alignment and structure
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Length = 312 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query268
1gp6_A356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 100.0
1w9y_A319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 100.0
3oox_A312 Putative 2OG-Fe(II) oxygenase family protein; stru 100.0
1odm_A331 Isopenicillin N synthase; antibiotic biosynthesis, 100.0
1dcs_A311 Deacetoxycephalosporin C synthase; ferrous oxygena 100.0
3on7_A280 Oxidoreductase, iron/ascorbate family; structural 100.0
3i3q_A211 Alpha-ketoglutarate-dependent dioxygenase ALKB; be 93.02
2hbt_A247 EGL nine homolog 1; prolyl hydroxylase, hypoxia in 89.28
3dkq_A243 PKHD-type hydroxylase SBAL_3634; putative oxygenas 88.11
2rg4_A216 Uncharacterized protein; rhodobacterales, oceanico 86.9
3s57_A204 Alpha-ketoglutarate-dependent dioxygenase ALKB HO; 86.55
2iuw_A238 Alkylated repair protein ALKB homolog 3; oxidoredu 86.15
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Back     alignment and structure
Probab=100.00  E-value=4.7e-65  Score=472.39  Aligned_cols=254  Identities=30%  Similarity=0.536  Sum_probs=218.2

Q ss_pred             CCCCCCCccCCCCCCCCccC---c-----cccc-cc-cccccccccc--HHHHHHHHHHHhhcceEEEec----------
Q 045644            1 MLAIPPRYIRPGQDLTTISD---N-----NLDS-RL-LQSLFSEEST--DSELSRLHFACKEWASFQLSY----------   58 (268)
Q Consensus         1 ~~~vP~~y~~p~~~~~~~~~---~-----~~~~-~I-l~~l~~~~~~--~~~~~~l~~Ac~~~GFF~l~n----------   58 (268)
                      +.+||++|++|.+++|....   .     ...+ +| |+.|.+++..  ++++++|++||++||||||+|          
T Consensus        15 ~~~vP~~~~~p~~~~~~~~~~~~~~~~~~~~~iPvIDls~l~~~~~~~~~~~~~~l~~A~~~~GFF~v~nHGi~~~l~~~   94 (356)
T 1gp6_A           15 IISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKASLDWGVMHLINHGIPADLMER   94 (356)
T ss_dssp             CSSCCGGGSCCHHHHTTCCCHHHHHHCCCSCCCCEEECTTTTCSCHHHHHHHHHHHHHHHHHTSEEEEESCSCCHHHHHH
T ss_pred             CCCCCHHhcCCchhcccccccccccccccCCCCCEEEchhccCCChHHHHHHHHHHHHHHHhCCEEEEeCCCCCHHHHHH
Confidence            35899999999888876332   1     1124 56 9988765542  235699999999999999999          


Q ss_pred             ---------------------------ceecccccccccccccccccccccccCCcCCCCCCCCCCCCCCCCh-------
Q 045644           59 ---------------------------TCRFGQAFVISEEQKVDWIDIFFMTTLPIHLRKPHLFPKLPLYPLD-------  104 (268)
Q Consensus        59 ---------------------------~~gy~~~~~~~~~~~~d~~e~~~~~~~p~~~~~~n~wP~~~~~fr~-------  104 (268)
                                                 .+||+........++.||+|.|+++..|.....+|.||+.+++||+       
T Consensus        95 ~~~~~~~FF~lP~eeK~~~~~~~~~~~~~Gy~~~~~~~~~~~~d~kE~~~~~~~p~~~~~~~~wP~~~~~fr~~~~~y~~  174 (356)
T 1gp6_A           95 VKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAK  174 (356)
T ss_dssp             HHHHHHHHHTSCHHHHGGGBCBGGGTBCSEEECCCCCSTTCCCCSCEEEEEEEESGGGCCGGGSCCSSTTHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHhhcccccccCccccCcCcccCCCCCCChhheeeeecCCccccccccCCCcchhhhHHHHHHHH
Confidence                                       1356554444445678999999998776544678999999999998       


Q ss_pred             ---------------------hhHHHhhh---CCCceEEEeecCCCCCCCceeeeeeccCCCceEEEeeeCCCCceEEee
Q 045644          105 ---------------------FSLSEYFE---NGFQSMGMNYYPPCPQPEKVVGLTTNSDDSVLTMLLEINEVEGLQIKK  160 (268)
Q Consensus       105 ---------------------~~f~~~~~---~~~~~~r~~~Yp~~~~~~~~~g~~~HtD~~~lTlL~q~d~v~GLqV~~  160 (268)
                                           ++|.+++.   .+.+.||++|||||++++..+|+++|||+|+||||+| |.++||||++
T Consensus       175 ~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~~~~lrl~~YPp~~~~~~~~g~~~HtD~g~lTlL~q-d~v~GLQV~~  253 (356)
T 1gp6_A          175 CLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILH-NMVPGLQLFY  253 (356)
T ss_dssp             HHHHHHHHHHHHHHHHTTSCTTHHHHHTTHHHHCEEEEEEEEECCCSSTTTCCSEEEECCCSSEEEEEE-CSCCCEEEEE
T ss_pred             HHHHHHHHHHHHHHHHcCCCHHHHHHHhcccCCccceeeeeecCCCCCcccccCcCCccCCCeEEEEEE-cCCCCeEEec
Confidence                                 57777776   4678899999999999988999999999999999999 6799999999


Q ss_pred             CCeEEEecCCCCeEEEehhhHHHHHhcCcccccccccccCCCCCcceeEEEeeeCCCe-EEecCCcccCCCCCCCCCccc
Q 045644          161 DGKWIPVTPVPNAFVVNIGVVLEIVTNGTYRSIEHRVIVNSIQGRLSISTVYLVIYDG-EMYPTSNLVSENNPLLFKRVT  239 (268)
Q Consensus       161 ~g~W~~v~p~~~~~vVniGd~l~~~TnG~~kS~~HRV~~~~~~~R~Si~~F~~p~~d~-~i~p~~~~v~~~~p~~y~~~~  239 (268)
                      +|+|++|+|++|+|||||||+||+||||+|||+.|||+++++++|||++||+.|+.|+ +|+|+++|+++++|++|+++|
T Consensus       254 ~g~Wi~V~p~pgalvVNiGD~l~~~TnG~~kS~~HRVv~~~~~~R~Sia~F~~P~~d~~~i~pl~~~~~~~~p~~y~~~t  333 (356)
T 1gp6_A          254 EGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPEMVSVESPAKFPPRT  333 (356)
T ss_dssp             TTEEEECCCCTTCEEEEECHHHHHHTTTSSCCCCEEECCCSSCCEEEEEEEEECCTTTCEECCCGGGCCSSSCCSSCCEE
T ss_pred             CCcEEECcCCCCeEEEEeccHHHHhcCCEeeccCceecCCCCCCEEEEEEeecCCCCCcEEeCChhhcCCCCCccCCCcc
Confidence            9999999999999999999999999999999999999999889999999999999999 999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCC
Q 045644          240 VEEYFRNLCARKLRGK  255 (268)
Q Consensus       240 ~~ey~~~~~~~~~~~~  255 (268)
                      ++||+..++++.++++
T Consensus       334 ~~eyl~~~~~~~~d~~  349 (356)
T 1gp6_A          334 FAQHIEHKLFGKEQEE  349 (356)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccCcc
Confidence            9999999888766544
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Back     alignment and structure
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Back     alignment and structure
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Back     alignment and structure
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Back     alignment and structure
>3i3q_A Alpha-ketoglutarate-dependent dioxygenase ALKB; beta jellyroll, DNA damage, DNA repair, iron, M binding, oxidoreductase; HET: AKG; 1.40A {Escherichia coli} SCOP: b.82.2.10 PDB: 2fd8_A* 2fdg_A* 2fdh_A* 2fdf_A* 2fdj_A 2fdk_A* 2fdi_A* 3i2o_A* 3i3m_A* 3i49_A* 3t4h_B* 3t3y_A* 3t4v_A* 3o1t_A* 3o1o_A* 3o1m_A* 3o1r_A* 3o1s_A* 3o1p_A* 3o1u_A* ... Back     alignment and structure
>2hbt_A EGL nine homolog 1; prolyl hydroxylase, hypoxia inducible factor, HIF, 2- oxoglutarate, oxygenase, oxidoreductase; HET: UN9; 1.60A {Homo sapiens} PDB: 2hbu_A* 2g1m_A* 3hqu_A* 3hqr_A* 2y33_A* 2y34_A* 2g19_A* 3ouj_A* 3ouh_A* 3oui_A* Back     alignment and structure
>3dkq_A PKHD-type hydroxylase SBAL_3634; putative oxygenase, structural genomics, JOI for structural genomics, JCSG; 2.26A {Shewanella baltica OS155} Back     alignment and structure
>2rg4_A Uncharacterized protein; rhodobacterales, oceanicola granulosus HTCC2516, Q2CBJ1_9RHO structural genomics, PSI-2; 1.90A {Oceanicola granulosus} PDB: 3bvc_A Back     alignment and structure
>3s57_A Alpha-ketoglutarate-dependent dioxygenase ALKB HO; protein-DNA complex, jelly-roll fold, dioxygenase, dsDNA BIN plasma, oxidoreductase-DNA complex; HET: AKG; 1.60A {Homo sapiens} PDB: 3s5a_A* 3rzg_A 3rzl_A 3rzh_A* 3rzj_A* 3rzk_A* 3rzm_A 3bty_A* 3buc_A* 3h8r_A* 3h8o_A* 3h8x_A* 3btx_A* 3bu0_A* 3btz_A* Back     alignment and structure
>2iuw_A Alkylated repair protein ALKB homolog 3; oxidoreductase, DNA/RNA repair, demethylase, beta jellyroll; HET: AKG; 1.50A {Homo sapiens} SCOP: b.82.2.10 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 268
d1gp6a_349 b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cr 4e-29
d1w9ya1307 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxyla 2e-26
d1dcsa_311 b.82.2.1 (A:) Deacetoxycephalosporin C synthase {S 6e-14
d1odma_329 b.82.2.1 (A:) Isopenicillin N synthase {Emericella 2e-12
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 349 Back     information, alignment and structure

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: Anthocyanidin synthase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  110 bits (276), Expect = 4e-29
 Identities = 82/335 (24%), Positives = 130/335 (38%), Gaps = 86/335 (25%)

Query: 3   AIPPRYIRPGQDLTTISDNNLDSRL----------LQSLFSEESTDSE--LSRLHFACKE 50
           +IP  YIRP ++L +I+D  L+ +           L+++ S++    E  +  L  A  +
Sbjct: 16  SIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKASLD 75

Query: 51  WASFQLSY-------------------------------------TCRFGQAFVISEEQK 73
           W    L                                          +G     +   +
Sbjct: 76  WGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQ 135

Query: 74  VDWIDIFFMTTLPIHLRKPHLFPKLPLYPLD----------------------------- 104
           ++W D FF    P   R   ++PK P   ++                             
Sbjct: 136 LEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKALSVGLGLEPD 195

Query: 105 --FSLSEYFENGFQSMGMNYYPPCPQPEKVVGLTTNSDDSVLTMLLEINEVEGLQIKKDG 162
                    E     M +NYYP CPQPE  +G+  ++D S LT +L  N V GLQ+  +G
Sbjct: 196 RLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFIL-HNMVPGLQLFYEG 254

Query: 163 KWIPVTPVPNAFVVNIGVVLEIVTNGTYRSIEHRVIVNSIQGRLSISTVYLVIYDGEMY- 221
           KW+    VP++ V++IG  LEI++NG Y+SI HR +VN  + R+S +       D  +  
Sbjct: 255 KWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLK 314

Query: 222 PTSNLVSENNPLLFKRVTVEEYFRNLCARKLRGKS 256
           P   +VS  +P  F   T  ++       KL GK 
Sbjct: 315 PLPEMVSVESPAKFPPRTFAQHIE----HKLFGKE 345
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Length = 307 Back     information, alignment and structure
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Length = 311 Back     information, alignment and structure
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Length = 329 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query268
d1gp6a_349 Anthocyanidin synthase {Mouse-ear cress (Arabidops 100.0
d1w9ya1307 1-aminocyclopropane-1-carboxylate oxidase 1 {Petun 100.0
d1odma_329 Isopenicillin N synthase {Emericella nidulans [Tax 100.0
d1dcsa_311 Deacetoxycephalosporin C synthase {Streptomyces cl 100.0
d2fdia1200 Alkylated DNA repair protein AlkB {Escherichia col 96.1
d2iuwa1210 AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606] 92.51
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: Anthocyanidin synthase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=8.7e-61  Score=438.50  Aligned_cols=249  Identities=31%  Similarity=0.534  Sum_probs=206.5

Q ss_pred             CCCCCCCccCCCCCCCCccC--------ccccc-cc-ccccccccccH--HHHHHHHHHHhhcceEEEec----------
Q 045644            1 MLAIPPRYIRPGQDLTTISD--------NNLDS-RL-LQSLFSEESTD--SELSRLHFACKEWASFQLSY----------   58 (268)
Q Consensus         1 ~~~vP~~y~~p~~~~~~~~~--------~~~~~-~I-l~~l~~~~~~~--~~~~~l~~Ac~~~GFF~l~n----------   58 (268)
                      +.+||++||+|++++|..+.        +..++ +| |+.|.+++...  +.+++|++||++||||||+|          
T Consensus        14 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~IPvIDls~l~~~d~~~r~~~~~~l~~A~~~~GFf~l~nHGI~~~li~~   93 (349)
T d1gp6a_          14 IISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKASLDWGVMHLINHGIPADLMER   93 (349)
T ss_dssp             CSSCCGGGSCCHHHHTTCCCHHHHHHCCCSCCCCEEECTTTTCSCHHHHHHHHHHHHHHHHHTSEEEEESCSCCHHHHHH
T ss_pred             CccCCHhhcCChhhcCCCCccccccccCCCCCcCeEEChhcCCCCHHHHHHHHHHHHHHHHhCCEEEEEccCCCHHHHHH
Confidence            56899999999999886532        12233 56 99998877643  35699999999999999999          


Q ss_pred             ---------------------------ceecccccccccccccccccccccccCCcCCCCCCCCCCCCCCCCh-------
Q 045644           59 ---------------------------TCRFGQAFVISEEQKVDWIDIFFMTTLPIHLRKPHLFPKLPLYPLD-------  104 (268)
Q Consensus        59 ---------------------------~~gy~~~~~~~~~~~~d~~e~~~~~~~p~~~~~~n~wP~~~~~fr~-------  104 (268)
                                                 ..+|+...........+|.+.+.....+.....+|.||+.++.||+       
T Consensus        94 ~~~~~~~FF~lP~eeK~k~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~wp~~~~~f~e~~~~~~~  173 (349)
T d1gp6a_          94 VKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAK  173 (349)
T ss_dssp             HHHHHHHHHTSCHHHHGGGBCBGGGTBCSEEECCCCCSTTCCCCSCEEEEEEEESGGGCCGGGSCCSSTTHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHhhhhcccccCCccccccccccccccccchhhhhcccccccccccccccccccchHHHHHHHHHH
Confidence                                       1222222223344556676665554445555678999999999987       


Q ss_pred             ---------------------hhHHHhhh---CCCceEEEeecCCCCCCCceeeeeeccCCCceEEEeeeCCCCceEEee
Q 045644          105 ---------------------FSLSEYFE---NGFQSMGMNYYPPCPQPEKVVGLTTNSDDSVLTMLLEINEVEGLQIKK  160 (268)
Q Consensus       105 ---------------------~~f~~~~~---~~~~~~r~~~Yp~~~~~~~~~g~~~HtD~~~lTlL~q~d~v~GLqV~~  160 (268)
                                           ++|.+.+.   ...+.||++|||+++++...+|+++|||+|+||||+| +.++||||.+
T Consensus       174 ~~~~la~~ll~~la~~Lgl~~~~~~~~~~~~~~~~~~lrl~~Yp~~~~~~~~~g~~~HtD~g~lTlL~q-~~~~GLqv~~  252 (349)
T d1gp6a_         174 CLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILH-NMVPGLQLFY  252 (349)
T ss_dssp             HHHHHHHHHHHHHHHHTTSCTTHHHHHTTHHHHCEEEEEEEEECCCSSTTTCCSEEEECCCSSEEEEEE-CSCCCEEEEE
T ss_pred             HHHHHHHhhhHHHHHHcCCCHHHHHHHhccccccceeeeecccccccchhhccccccCCCCcceEEEec-cCCcceeeec
Confidence                                 45555542   3456899999999999888999999999999999999 7899999999


Q ss_pred             CCeEEEecCCCCeEEEehhhHHHHHhcCcccccccccccCCCCCcceeEEEeeeCCCeEE-ecCCcccCCCCCCCCCccc
Q 045644          161 DGKWIPVTPVPNAFVVNIGVVLEIVTNGTYRSIEHRVIVNSIQGRLSISTVYLVIYDGEM-YPTSNLVSENNPLLFKRVT  239 (268)
Q Consensus       161 ~g~W~~v~p~~~~~vVniGd~l~~~TnG~~kS~~HRV~~~~~~~R~Si~~F~~p~~d~~i-~p~~~~v~~~~p~~y~~~~  239 (268)
                      +|+|++|+|.+|++|||+||+||+||||+||||+|||+.+++++||||+||++|+.|++| +|+++|+++++|++|+|||
T Consensus       253 ~g~W~~V~p~~~a~vVNvGD~l~~~TnG~~~St~HRVv~~~~~~R~Si~~F~~p~~d~~i~~pl~~~v~~~~p~~y~~~t  332 (349)
T d1gp6a_         253 EGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPEMVSVESPAKFPPRT  332 (349)
T ss_dssp             TTEEEECCCCTTCEEEEECHHHHHHTTTSSCCCCEEECCCSSCCEEEEEEEEECCTTTCEECCCGGGCCSSSCCSSCCEE
T ss_pred             CCceEEccCCCCCeeeeHHhHHHHHhCCCccCcCccccCCCCCCeEEEEEEecCCCcceeecCCHHHcCCCCCCCCCCcc
Confidence            999999999999999999999999999999999999999999999999999999999765 8999999999999999999


Q ss_pred             HHHHHHHHHHh
Q 045644          240 VEEYFRNLCAR  250 (268)
Q Consensus       240 ~~ey~~~~~~~  250 (268)
                      ++||++.++..
T Consensus       333 ~~e~~~~rl~~  343 (349)
T d1gp6a_         333 FAQHIEHKLFG  343 (349)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhc
Confidence            99999998754
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Back     information, alignment and structure
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Back     information, alignment and structure
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Back     information, alignment and structure
>d2fdia1 b.82.2.10 (A:15-214) Alkylated DNA repair protein AlkB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2iuwa1 b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure