Citrus Sinensis ID: 045655

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------
MASKLFFLKTSPILIALLLFAYPSCAAADVDPTAPVPPETICMCTPNPSDCKSVLPAASPNQTADTYTYCRLSIRKALTQTQKFLNSVDNYLKSGSTLSISAIRALEDCRLLADLNMDYLSTSYQTANTTSQILPTIQADDVQALLSAILTNQQTCFDGLQTSANSFESINNGLSVPLLEDIKLSSVLLALFKKGWIGDQKKIITSWQLSSTQRLVGQNGRLPLVMSDRIRAIYESAVRGRKLSSTGDGDQGVLVTDIVTVAQDGSGNFSTITDAINFAPNNTNVSNGYFLIYITAGVYQEYVSIPKNKINLLMIGDGINQTIITGNRSVVDGWTTFNSATFIVVAPNFVASSITFRNTAGPSKGQAVALRSGADFS
cccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHccccHHHHccccccHHHHHHcccccHHHHHHHHHHHHHHHHcccccccccHHHccccccccccccccccccccccHHHHHHHHHHHcccccccccccccccccccEEEEccccccccccHHHHHHHccccccccccEEEEEEEcEEEEEEEEEccccccEEEEEEcccccEEEEcccccccccccccEEEEEEcccEEEEccEEEcccccccccEEEEEEccccc
cHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHcccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHccccccccccccccccccccccccccHHHHHHHHccccccccHHcccccccccccccEEEEcccccccccHHHHHHHccccccccccEEEEEEccEEEEccEEEccccccEEEEEcccccEEEEEccccccccccHHHccEEEcccccEEEEEEEEEcccHHHcccccEEEccccE
masklfflktSPILIALLLFaypscaaadvdptapvppeticmctpnpsdcksvlpaaspnqtadtytYCRLSIRKALTQTQKFLNSVDNYLKSGSTLSISAIRALEDCRLLADLNMDYLSTsyqtanttsqilptiQADDVQALLSAILTNQQTCfdglqtsansfesinnglsvplledIKLSSVLLALFKKGWIGDQKKIITSWQLSSTQRLvgqngrlplvMSDRIRAIYESAVRgrklsstgdgdqgvLVTDIVTVaqdgsgnfsTITDAinfapnntnvsnGYFLIYITAGVYQeyvsipknkiNLLMigdginqtiitgnrsvvdgwttfnsATFIvvapnfvassitfrntagpskgQAVALRSGADFS
MASKLFFLKTSPILIALLLFAYPSCAAADVDPTAPVPPETICMCTPNPSDCKSVLPAASPNQTADTYTYCRLSIRKALTQTQKFLNSVDNYLKSGSTLSISAIRALEDCRLLADLNMDYLSTSYQTANTTSQILPTIQADDVQALLSAILTNQQTCFDGLQTSANSFESINNGLSVPLLEDIKLSSVLLALFKKGWIGDQKKIItswqlsstqrlvgqngrlplvmsDRIRAIYESAvrgrklsstgdgdqgvlVTDIVTVAQDGSGNFSTITDAINFAPNNTNVSNGYFLIYITAGVYQEYVSIPKNKINLLMIGDGINQTIITGNRSVVDGWTTFNSATFIVVAPNFVASSITfrntagpskgqavalrsgadfs
MASKLFFLKTSPILIALLLFAYPSCaaadvdptapvppETICMCTPNPSDCKSVLPAASPNQTADTYTYCRLSIRKALTQTQKFLNSVDNYLKSGSTLSISAIRALEDCRLLADLNMDYLSTSYQTANTTSQILPTIQADDVQALLSAILTNQQTCFDGLQTSANSFESINNGLSVPLLEDIKLSSVLLALFKKGWIGDQKKIITSWQLSSTQRLVGQNGRLPLVMSDRIRAIYESAVRGRKLSSTGDGDQGVLVTDIVTVAQDGSGNFSTITDAINFAPNNTNVSNGYFLIYITAGVYQEYVSIPKNKINLLMIGDGINQTIITGNRSVVDGWTTFNSATFIVVAPNFVASSITFRNTAGPSKGQAVALRSGADFS
****LFFLKTSPILIALLLFAYPSCAAADVDPTAPVPPETICMCTP****************TADTYTYCRLSIRKALTQTQKFLNSVDNYLKSGSTLSISAIRALEDCRLLADLNMDYLSTSYQTANTTSQILPTIQADDVQALLSAILTNQQTCFDGLQTSANSFESINNGLSVPLLEDIKLSSVLLALFKKGWIGDQKKIITSWQLSSTQRLVGQNGRLPLVMSDRIRAIYESAVRGRKL***GDGDQGVLVTDIVTVAQDGSGNFSTITDAINFAPNNTNVSNGYFLIYITAGVYQEYVSIPKNKINLLMIGDGINQTIITGNRSVVDGWTTFNSATFIVVAPNFVASSITFR********************
**SKLFFLKTSPILIALLLFAY******************ICMCTPNPSDCK*****************CRLSIRKALTQTQKF********************ALEDCRLLADLNMDYLSTSYQ************QADDVQALLSAILTNQQTCFDGLQTSANSFESI***LSVPLLEDIKLSSVLLALFKKGWIG***************************MSDRIRAIYESAVRGRKLSSTGDGDQGVLVTDIVTVAQDGSGNFSTITDAINFAPNNTNVSNGYFLIYITAGVYQEYVSIPKNKINLLMIGDGINQTIITGNRSVVDGWTTFNSATFIVVAPNFVASSITFRNTAGPSKGQAVALRSGAD**
MASKLFFLKTSPILIALLLFAYPSCAAADVDPTAPVPPETICMCTPNPSDCKSVLPAASPNQTADTYTYCRLSIRKALTQTQKFLNSVDNYLKSGSTLSISAIRALEDCRLLADLNMDYLSTSYQTANTTSQILPTIQADDVQALLSAILTNQQTCFDGLQTSANSFESINNGLSVPLLEDIKLSSVLLALFKKGWIGDQKKIITSWQLSSTQRLVGQNGRLPLVMSDRIRAIYESAVR*********GDQGVLVTDIVTVAQDGSGNFSTITDAINFAPNNTNVSNGYFLIYITAGVYQEYVSIPKNKINLLMIGDGINQTIITGNRSVVDGWTTFNSATFIVVAPNFVASSITFRNT******************
MASKLFFLKTSPILIALLLFAYPSCA*****PTAPVPPETICMCTPNPSDCKSVLPAASPNQTADTYTYCRLSIRKALTQTQKFLNSVDNYLKSGSTLSISAIRALEDCRLLADLNMDYLSTSYQTANTTSQILPTIQADDVQALLSAILTNQQTCFDGLQTSANSFESINNGLSVPLLEDIKLSSVLLALFKKGWIGD***********************************E*****R***********VLVTDIVTVAQDGSGNFSTITDAINFAPNNTNVSNGYFLIYITAGVYQEYVSIPKNKINLLMIGDGINQTIITGNRSVVDGWTTFNSATFIVVAPNFVASSITFRNTAGPSKGQAVALRSG****
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MASKLFFLKTSPILIALLLFAYPSCAAADVDPTAPVPPETICMCTPNPSDCKSVLPAASPNQTADTYTYCRLSIRKALTQTQKFLNSVDNYLKSGSTLSISAIRALEDCRLLADLNMDYLSTSYQTANTTSQILPTIQADDVQALLSAILTNQQTCFDGLQTSANSFESINNGLSVPLLEDIKLSSVLLALFKKGWIGDQKKIITSWQLSSTQRLVGQNGRLPLVMSDRIRAIYESAVRGRKLSSTGDGDQGVLVTDIVTVAQDGSGNFSTITDAINFAPNNTNVSNGYFLIYITAGVYQEYVSIPKNKINLLMIGDGINQTIITGNRSVVDGWTTFNSATFIVVAPNFVASSITFRNTAGPSKGQAVALRSGADFS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query377 2.2.26 [Sep-21-2011]
Q8RXK7 573 Probable pectinesterase/p yes no 0.885 0.582 0.541 6e-99
Q9SRX4 579 Probable pectinesterase/p no no 0.880 0.573 0.55 2e-96
O22256 560 Probable pectinesterase/p no no 0.957 0.644 0.505 5e-89
Q94CB1 619 Probable pectinesterase/p no no 0.867 0.528 0.376 4e-55
Q9FF77 624 Probable pectinesterase/p no no 0.867 0.524 0.359 1e-53
O48711 547 Probable pectinesterase/p no no 0.822 0.566 0.339 1e-36
O49006 592 Pectinesterase/pectineste no no 0.893 0.569 0.333 3e-36
Q43062 522 Pectinesterase/pectineste N/A no 0.596 0.431 0.383 5e-36
P83948 584 Pectinesterase 3 OS=Citru no no 0.809 0.522 0.344 2e-35
Q42534 587 Pectinesterase 2 OS=Arabi no no 0.851 0.546 0.339 3e-35
>sp|Q8RXK7|PME41_ARATH Probable pectinesterase/pectinesterase inhibitor 41 OS=Arabidopsis thaliana GN=PME41 PE=2 SV=2 Back     alignment and function desciption
 Score =  361 bits (926), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 189/349 (54%), Positives = 248/349 (71%), Gaps = 15/349 (4%)

Query: 40  TICMCTPNPSDCKSVLPAASPNQTADTYTYCRLSIRKALTQTQKFLNSVDNYLK-SGSTL 98
           TIC  TP+P  CKSV P  S     D   Y R S+RK+LTQ++KF  ++D YLK + + L
Sbjct: 33  TICKTTPDPKFCKSVFPQTSQ---GDVREYGRFSLRKSLTQSRKFTRTIDRYLKRNNALL 89

Query: 99  SISAIRALEDCRLLADLNMDYLSTSYQTAN--TTSQILPTIQADDVQALLSAILTNQQTC 156
           S SA+ AL+DCR LA L  DYL TS++T N  T+S+ L   +AD++Q LLSA LTN+QTC
Sbjct: 90  SQSAVGALQDCRYLASLTTDYLITSFETVNITTSSKTLSFSKADEIQTLLSAALTNEQTC 149

Query: 157 FDGLQTSANSFESINNGLSVPLLEDIKLSSVLLALFKKGWIGDQKKIITSWQLSSTQRLV 216
            DG+ T+A+S  +I NG+++PL+ D KL SV LALF KGW+  +KK + S+  +  +   
Sbjct: 150 LDGINTAASSSWTIRNGVALPLINDTKLFSVSLALFTKGWVPKKKKQVASYSWAHPKNTH 209

Query: 217 GQ--------NGRLPLVMSDRIRAIYESAVRGRKLSSTGDGDQGVLVTDIVTVAQDGSGN 268
                     NG LPL M++  RA+YES  R RKL+   +    VLV+DIVTV Q+G+GN
Sbjct: 210 SHTKPFRHFRNGALPLKMTEHTRAVYESLSR-RKLADDDNDVNTVLVSDIVTVNQNGTGN 268

Query: 269 FSTITDAINFAPNNTNVSNGYFLIYITAGVYQEYVSIPKNKINLLMIGDGINQTIITGNR 328
           F+TIT+A+N APN T+ + GYF+IY+T+GVY+E V I KNK  L+MIGDGIN+T++TGNR
Sbjct: 269 FTTITEAVNSAPNKTDGTAGYFVIYVTSGVYEENVVIAKNKRYLMMIGDGINRTVVTGNR 328

Query: 329 SVVDGWTTFNSATFIVVAPNFVASSITFRNTAGPSKGQAVALRSGADFS 377
           +VVDGWTTFNSATF V +PNFVA ++TFRNTAGP K QAVA+RS AD S
Sbjct: 329 NVVDGWTTFNSATFAVTSPNFVAVNMTFRNTAGPEKHQAVAMRSSADLS 377
Acts in the modification of cell walls via demethylesterification of cell wall pectin.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 1
>sp|Q9SRX4|PME7_ARATH Probable pectinesterase/pectinesterase inhibitor 7 OS=Arabidopsis thaliana GN=PME7 PE=2 SV=1 Back     alignment and function description
>sp|O22256|PME20_ARATH Probable pectinesterase/pectinesterase inhibitor 20 OS=Arabidopsis thaliana GN=PME20 PE=2 SV=2 Back     alignment and function description
>sp|Q94CB1|PME25_ARATH Probable pectinesterase/pectinesterase inhibitor 25 OS=Arabidopsis thaliana GN=PME25 PE=2 SV=1 Back     alignment and function description
>sp|Q9FF77|PME47_ARATH Probable pectinesterase/pectinesterase inhibitor 47 OS=Arabidopsis thaliana GN=PME47 PE=2 SV=1 Back     alignment and function description
>sp|O48711|PME12_ARATH Probable pectinesterase/pectinesterase inhibitor 12 OS=Arabidopsis thaliana GN=PME12 PE=2 SV=1 Back     alignment and function description
>sp|O49006|PME3_ARATH Pectinesterase/pectinesterase inhibitor 3 OS=Arabidopsis thaliana GN=PME3 PE=2 SV=2 Back     alignment and function description
>sp|Q43062|PME_PRUPE Pectinesterase/pectinesterase inhibitor PPE8B OS=Prunus persica PE=2 SV=1 Back     alignment and function description
>sp|P83948|PME3_CITSI Pectinesterase 3 OS=Citrus sinensis PE=1 SV=1 Back     alignment and function description
>sp|Q42534|PME2_ARATH Pectinesterase 2 OS=Arabidopsis thaliana GN=PME2 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query377
255564230 566 Pectinesterase-2 precursor, putative [Ri 0.907 0.604 0.62 1e-114
224128446 560 predicted protein [Populus trichocarpa] 0.938 0.632 0.607 1e-114
224068368 558 predicted protein [Populus trichocarpa] 0.962 0.650 0.602 1e-113
356505590 556 PREDICTED: probable pectinesterase/pecti 0.891 0.604 0.600 1e-107
356572750 555 PREDICTED: probable pectinesterase/pecti 0.891 0.605 0.594 1e-107
356503911 615 PREDICTED: LOW QUALITY PROTEIN: probable 0.970 0.595 0.574 1e-107
357442451 499 Pectinesterase [Medicago truncatula] gi| 0.949 0.717 0.568 1e-105
356570974 610 PREDICTED: probable pectinesterase/pecti 0.931 0.575 0.580 1e-105
357442409 556 Pectinesterase [Medicago truncatula] gi| 0.949 0.643 0.563 1e-104
356536715 559 PREDICTED: probable pectinesterase/pecti 0.941 0.635 0.571 1e-104
>gi|255564230|ref|XP_002523112.1| Pectinesterase-2 precursor, putative [Ricinus communis] gi|223537674|gb|EEF39297.1| Pectinesterase-2 precursor, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 217/350 (62%), Positives = 264/350 (75%), Gaps = 8/350 (2%)

Query: 28  ADVDPTAPVPPETICMCTPNPSDCKSVLPAASPNQTADTYTYCRLSIRKALTQTQKFLNS 87
           AD  P+ P  P ++C  TP P+ CKSVLP       A+ Y Y R S+RK+L+Q++KFL+ 
Sbjct: 30  ADSPPSNPTSPGSLCNSTPEPAYCKSVLP----KHNANVYDYGRYSVRKSLSQSRKFLSL 85

Query: 88  VDNYLKSGSTLSISAIRALEDCRLLADLNMDYLSTSYQTANTTSQILPTIQADDVQALLS 147
           VD YL   S+LSISAIRALEDCRLLA LNMD+L  S+ T NT+S  L +++ADDVQ  LS
Sbjct: 86  VDKYLARRSSLSISAIRALEDCRLLAGLNMDFLLNSFHTVNTSSTTLSSLKADDVQTFLS 145

Query: 148 AILTNQQTCFDGLQTSANSFESINNGLSVPLLEDIKLSSVLLALFKKGWIGDQKKIITSW 207
           AILTNQQTC +GLQ +A+++ S+ NGL+VPL  D KL SV LALF KGW+  +KK  T W
Sbjct: 146 AILTNQQTCLEGLQATASAW-SVKNGLAVPLSNDTKLYSVSLALFTKGWVPKKKKGRT-W 203

Query: 208 QLSSTQRLVGQNGRLPLVMSDRIRAIYESAVRGRKLSSTGDGDQGVLVTDIVTVAQDGSG 267
           Q +  Q L   NGRLPL MS + R ++ES  R RKL  T D +  VLV+DIVTV Q+G+G
Sbjct: 204 QPTGKQ-LAFSNGRLPLRMSSKTRTVFESVSR-RKLLQTDDQNDAVLVSDIVTVNQNGTG 261

Query: 268 NFSTITDAINFAPNNTNVSNGYFLIYITAGVYQEYVSIPKNKINLLMIGDGINQTIITGN 327
           +F+TI DA+  APNNT+ SNGYF+I++TAGVY+EYVSIPKNK  L+M+G GINQTIITGN
Sbjct: 262 DFTTINDAVAAAPNNTDGSNGYFMIFVTAGVYEEYVSIPKNKKYLMMVGAGINQTIITGN 321

Query: 328 RSVVDGWTTFNSATFIVVAPNFVASSITFRNTAGPSKGQAVALRSGADFS 377
           RSVVDGWTTFNSATF VVAPN+V  +ITFRNTAG  K QAVALRSGAD S
Sbjct: 322 RSVVDGWTTFNSATFAVVAPNYVGVNITFRNTAGAIKHQAVALRSGADLS 371

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224128446|ref|XP_002320332.1| predicted protein [Populus trichocarpa] gi|222861105|gb|EEE98647.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224068368|ref|XP_002302726.1| predicted protein [Populus trichocarpa] gi|222844452|gb|EEE81999.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356505590|ref|XP_003521573.1| PREDICTED: probable pectinesterase/pectinesterase inhibitor 41-like [Glycine max] Back     alignment and taxonomy information
>gi|356572750|ref|XP_003554529.1| PREDICTED: probable pectinesterase/pectinesterase inhibitor 41-like [Glycine max] Back     alignment and taxonomy information
>gi|356503911|ref|XP_003520743.1| PREDICTED: LOW QUALITY PROTEIN: probable pectinesterase/pectinesterase inhibitor 7-like [Glycine max] Back     alignment and taxonomy information
>gi|357442451|ref|XP_003591503.1| Pectinesterase [Medicago truncatula] gi|355480551|gb|AES61754.1| Pectinesterase [Medicago truncatula] Back     alignment and taxonomy information
>gi|356570974|ref|XP_003553657.1| PREDICTED: probable pectinesterase/pectinesterase inhibitor 7-like [Glycine max] Back     alignment and taxonomy information
>gi|357442409|ref|XP_003591482.1| Pectinesterase [Medicago truncatula] gi|357442459|ref|XP_003591507.1| Pectinesterase [Medicago truncatula] gi|355480530|gb|AES61733.1| Pectinesterase [Medicago truncatula] gi|355480555|gb|AES61758.1| Pectinesterase [Medicago truncatula] Back     alignment and taxonomy information
>gi|356536715|ref|XP_003536881.1| PREDICTED: probable pectinesterase/pectinesterase inhibitor 41-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query377
TAIR|locus:2133224 573 ATPMEPCRB [Arabidopsis thalian 0.885 0.582 0.541 2.1e-91
TAIR|locus:2062013 560 AT2G47550 [Arabidopsis thalian 0.957 0.644 0.5 1.6e-88
TAIR|locus:2024750 579 AT1G02810 [Arabidopsis thalian 0.957 0.623 0.478 7.1e-77
TAIR|locus:2103212 619 AT3G10720 [Arabidopsis thalian 0.864 0.526 0.389 2.4e-53
TAIR|locus:2175334 624 AT5G04970 [Arabidopsis thalian 0.867 0.524 0.359 3.1e-51
TAIR|locus:2066195 547 AT2G26440 [Arabidopsis thalian 0.352 0.243 0.536 1e-38
TAIR|locus:2091000 592 PME3 "pectin methylesterase 3" 0.875 0.557 0.346 8.6e-38
TAIR|locus:2197056 587 PME2 "pectin methylesterase 2" 0.867 0.557 0.333 1.6e-36
TAIR|locus:2084751 527 AT3G43270 [Arabidopsis thalian 0.328 0.235 0.537 1.8e-36
TAIR|locus:2201230 554 AT1G23200 [Arabidopsis thalian 0.856 0.583 0.356 4.5e-35
TAIR|locus:2133224 ATPMEPCRB [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 911 (325.7 bits), Expect = 2.1e-91, P = 2.1e-91
 Identities = 189/349 (54%), Positives = 249/349 (71%)

Query:    40 TICMCTPNPSDCKSVLPAASPNQTADTYTYCRLSIRKALTQTQKFLNSVDNYLK-SGSTL 98
             TIC  TP+P  CKSV P  S     D   Y R S+RK+LTQ++KF  ++D YLK + + L
Sbjct:    33 TICKTTPDPKFCKSVFPQTSQG---DVREYGRFSLRKSLTQSRKFTRTIDRYLKRNNALL 89

Query:    99 SISAIRALEDCRLLADLNMDYLSTSYQTAN--TTSQILPTIQADDVQALLSAILTNQQTC 156
             S SA+ AL+DCR LA L  DYL TS++T N  T+S+ L   +AD++Q LLSA LTN+QTC
Sbjct:    90 SQSAVGALQDCRYLASLTTDYLITSFETVNITTSSKTLSFSKADEIQTLLSAALTNEQTC 149

Query:   157 FDGLQTSANSFESINNGLSVPLLEDIKLSSVLLALFKKGWIGDQKKIITSWQLSSTQRLV 216
              DG+ T+A+S  +I NG+++PL+ D KL SV LALF KGW+  +KK + S+  +  +   
Sbjct:   150 LDGINTAASSSWTIRNGVALPLINDTKLFSVSLALFTKGWVPKKKKQVASYSWAHPKNTH 209

Query:   217 G--------QNGRLPLVMSDRIRAIYESAVRGRKLSSTGDGDQGVLVTDIVTVAQDGSGN 268
                      +NG LPL M++  RA+YES  R RKL+   +    VLV+DIVTV Q+G+GN
Sbjct:   210 SHTKPFRHFRNGALPLKMTEHTRAVYESLSR-RKLADDDNDVNTVLVSDIVTVNQNGTGN 268

Query:   269 FSTITDAINFAPNNTNVSNGYFLIYITAGVYQEYVSIPKNKINLLMIGDGINQTIITGNR 328
             F+TIT+A+N APN T+ + GYF+IY+T+GVY+E V I KNK  L+MIGDGIN+T++TGNR
Sbjct:   269 FTTITEAVNSAPNKTDGTAGYFVIYVTSGVYEENVVIAKNKRYLMMIGDGINRTVVTGNR 328

Query:   329 SVVDGWTTFNSATFIVVAPNFVASSITFRNTAGPSKGQAVALRSGADFS 377
             +VVDGWTTFNSATF V +PNFVA ++TFRNTAGP K QAVA+RS AD S
Sbjct:   329 NVVDGWTTFNSATFAVTSPNFVAVNMTFRNTAGPEKHQAVAMRSSADLS 377
GO:0004857 "enzyme inhibitor activity" evidence=IEA
GO:0005576 "extracellular region" evidence=ISM
GO:0005618 "cell wall" evidence=IEA
GO:0030599 "pectinesterase activity" evidence=IEA;ISS;IMP
GO:0042545 "cell wall modification" evidence=IEA
GO:0009409 "response to cold" evidence=IEP
GO:0009741 "response to brassinosteroid stimulus" evidence=IEP
GO:0015824 "proline transport" evidence=RCA
TAIR|locus:2062013 AT2G47550 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2024750 AT1G02810 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2103212 AT3G10720 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2175334 AT5G04970 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2066195 AT2G26440 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2091000 PME3 "pectin methylesterase 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2197056 PME2 "pectin methylesterase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2084751 AT3G43270 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2201230 AT1G23200 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query377
PLN02713 566 PLN02713, PLN02713, Probable pectinesterase/pectin 1e-168
PLN03043 538 PLN03043, PLN03043, Probable pectinesterase/pectin 5e-88
pfam01095 298 pfam01095, Pectinesterase, Pectinesterase 5e-59
PLN02416 541 PLN02416, PLN02416, probable pectinesterase/pectin 9e-51
PLN02201 520 PLN02201, PLN02201, probable pectinesterase/pectin 6e-46
PLN02314 586 PLN02314, PLN02314, pectinesterase 3e-44
PLN02468 565 PLN02468, PLN02468, putative pectinesterase/pectin 8e-44
PLN02301 548 PLN02301, PLN02301, pectinesterase/pectinesterase 1e-43
PLN02313 587 PLN02313, PLN02313, Pectinesterase/pectinesterase 6e-43
PLN02933 530 PLN02933, PLN02933, Probable pectinesterase/pectin 1e-41
PLN02506 537 PLN02506, PLN02506, putative pectinesterase/pectin 3e-40
PLN02745 596 PLN02745, PLN02745, Putative pectinesterase/pectin 1e-39
PLN02484 587 PLN02484, PLN02484, probable pectinesterase/pectin 2e-37
PLN02995 539 PLN02995, PLN02995, Probable pectinesterase/pectin 3e-35
PLN02916 502 PLN02916, PLN02916, pectinesterase family protein 6e-35
PLN02217 670 PLN02217, PLN02217, probable pectinesterase/pectin 3e-34
PLN02170 529 PLN02170, PLN02170, probable pectinesterase/pectin 3e-33
PLN02708 553 PLN02708, PLN02708, Probable pectinesterase/pectin 2e-31
PLN02488 509 PLN02488, PLN02488, probable pectinesterase/pectin 2e-30
PLN02990 572 PLN02990, PLN02990, Probable pectinesterase/pectin 2e-29
PLN02197 588 PLN02197, PLN02197, pectinesterase 6e-26
PLN02432 293 PLN02432, PLN02432, putative pectinesterase 2e-18
PLN02773 317 PLN02773, PLN02773, pectinesterase 4e-18
PLN02682 369 PLN02682, PLN02682, pectinesterase family protein 4e-18
pfam04043145 pfam04043, PMEI, Plant invertase/pectin methyleste 5e-17
PLN02497 331 PLN02497, PLN02497, probable pectinesterase 2e-16
PLN02665 366 PLN02665, PLN02665, pectinesterase family protein 3e-16
PLN02480 343 PLN02480, PLN02480, Probable pectinesterase 1e-15
smart00856148 smart00856, PMEI, Plant invertase/pectin methylest 6e-15
PLN02304 379 PLN02304, PLN02304, probable pectinesterase 3e-14
PLN02634 359 PLN02634, PLN02634, probable pectinesterase 1e-12
PLN02698 497 PLN02698, PLN02698, Probable pectinesterase/pectin 2e-12
PLN02176 340 PLN02176, PLN02176, putative pectinesterase 1e-11
PLN02671 359 PLN02671, PLN02671, pectinesterase 3e-10
COG4677 405 COG4677, PemB, Pectin methylesterase [Carbohydrate 3e-10
PRK10531 422 PRK10531, PRK10531, acyl-CoA thioesterase; Provisi 8e-04
>gnl|CDD|215383 PLN02713, PLN02713, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information 
 Score =  480 bits (1238), Expect = e-168
 Identities = 229/380 (60%), Positives = 281/380 (73%), Gaps = 13/380 (3%)

Query: 1   MASKLFFLKTSPILIALLLFAYPSCAAADVDPTAPVPPETICMCTPNPSDCKSVLPAASP 60
           M+SKL  L T   L  LLL  + S +A+D  P+ PV P TIC  TP+PS CKSVLP    
Sbjct: 1   MSSKLILLTT---LALLLLLFFSSSSASDPPPSTPVSPSTICNTTPDPSFCKSVLP---H 54

Query: 61  NQTADTYTYCRLSIRKALTQTQKFLNSVDNYLKSGSTL-SISAIRALEDCRLLADLNMDY 119
           NQ  + Y Y R S+RK+L+Q++KFL+ VD YLK  STL S SAIRALEDC+ LA LN+D+
Sbjct: 55  NQPGNVYDYGRFSVRKSLSQSRKFLSLVDRYLKRNSTLLSKSAIRALEDCQFLAGLNIDF 114

Query: 120 LSTSYQTANTTSQILPTIQADDVQALLSAILTNQQTCFDGLQTSANSFESINNGLSVPLL 179
           L +S++T N++S+ L   QADDVQ LLSAILTNQQTC DGLQ +++++ S+ NGL+VPL 
Sbjct: 115 LLSSFETVNSSSKTLSDPQADDVQTLLSAILTNQQTCLDGLQAASSAW-SVRNGLAVPLS 173

Query: 180 EDIKLSSVLLALFKKGWIGDQKK--IITSWQLSSTQRLVGQNGRLPLVMSDRIRAIYESA 237
            D KL SV LALF KGW+  +KK    T  +         +NGRLPL M+++ RA+YES 
Sbjct: 174 NDTKLYSVSLALFTKGWVPKKKKGRPKTKRKAHFKPFRAFRNGRLPLKMTEKTRAVYESV 233

Query: 238 VRGRKLSSTGDGDQGVLVTDIVTVAQDGSGNFSTITDAINFAPNNTNVSNGYFLIYITAG 297
            R + L    +    VLV+DIVTV Q+G+GNF+TI DA+  APNNT+ SNGYF+IY+TAG
Sbjct: 234 SRRKLLDGDANA---VLVSDIVTVNQNGTGNFTTINDAVAAAPNNTDGSNGYFVIYVTAG 290

Query: 298 VYQEYVSIPKNKINLLMIGDGINQTIITGNRSVVDGWTTFNSATFIVVAPNFVASSITFR 357
           VY+EYVSIPKNK  L+MIGDGINQT+ITGNRSVVDGWTTFNSATF VV  NFVA +ITFR
Sbjct: 291 VYEEYVSIPKNKKYLMMIGDGINQTVITGNRSVVDGWTTFNSATFAVVGQNFVAVNITFR 350

Query: 358 NTAGPSKGQAVALRSGADFS 377
           NTAGP+K QAVALRSGAD S
Sbjct: 351 NTAGPAKHQAVALRSGADLS 370

Length = 566
>gnl|CDD|178606 PLN03043, PLN03043, Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>gnl|CDD|216297 pfam01095, Pectinesterase, Pectinesterase Back     alignment and domain information
>gnl|CDD|178037 PLN02416, PLN02416, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|177852 PLN02201, PLN02201, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215179 PLN02314, PLN02314, pectinesterase Back     alignment and domain information
>gnl|CDD|178087 PLN02468, PLN02468, putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215170 PLN02301, PLN02301, pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|177947 PLN02313, PLN02313, Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178521 PLN02933, PLN02933, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215280 PLN02506, PLN02506, putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178346 PLN02745, PLN02745, Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178102 PLN02484, PLN02484, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178574 PLN02995, PLN02995, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178504 PLN02916, PLN02916, pectinesterase family protein Back     alignment and domain information
>gnl|CDD|215130 PLN02217, PLN02217, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215114 PLN02170, PLN02170, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215379 PLN02708, PLN02708, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|178106 PLN02488, PLN02488, probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215535 PLN02990, PLN02990, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|177848 PLN02197, PLN02197, pectinesterase Back     alignment and domain information
>gnl|CDD|178051 PLN02432, PLN02432, putative pectinesterase Back     alignment and domain information
>gnl|CDD|178372 PLN02773, PLN02773, pectinesterase Back     alignment and domain information
>gnl|CDD|215367 PLN02682, PLN02682, pectinesterase family protein Back     alignment and domain information
>gnl|CDD|217858 pfam04043, PMEI, Plant invertase/pectin methylesterase inhibitor Back     alignment and domain information
>gnl|CDD|178113 PLN02497, PLN02497, probable pectinesterase Back     alignment and domain information
>gnl|CDD|215357 PLN02665, PLN02665, pectinesterase family protein Back     alignment and domain information
>gnl|CDD|178098 PLN02480, PLN02480, Probable pectinesterase Back     alignment and domain information
>gnl|CDD|214860 smart00856, PMEI, Plant invertase/pectin methylesterase inhibitor Back     alignment and domain information
>gnl|CDD|215173 PLN02304, PLN02304, probable pectinesterase Back     alignment and domain information
>gnl|CDD|215340 PLN02634, PLN02634, probable pectinesterase Back     alignment and domain information
>gnl|CDD|178301 PLN02698, PLN02698, Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>gnl|CDD|215117 PLN02176, PLN02176, putative pectinesterase Back     alignment and domain information
>gnl|CDD|178276 PLN02671, PLN02671, pectinesterase Back     alignment and domain information
>gnl|CDD|227022 COG4677, PemB, Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|236709 PRK10531, PRK10531, acyl-CoA thioesterase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 377
PLN02713 566 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02313 587 Pectinesterase/pectinesterase inhibitor 100.0
PLN02217 670 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02468 565 putative pectinesterase/pectinesterase inhibitor 100.0
PLN02484 587 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02314 586 pectinesterase 100.0
PLN02990 572 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02197 588 pectinesterase 100.0
PLN02995 539 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02506 537 putative pectinesterase/pectinesterase inhibitor 100.0
PLN02416 541 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02745 596 Putative pectinesterase/pectinesterase inhibitor 100.0
PLN02301 548 pectinesterase/pectinesterase inhibitor 100.0
PLN03043 538 Probable pectinesterase/pectinesterase inhibitor; 100.0
PLN02708 553 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02201 520 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02488 509 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02933 530 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02170 529 probable pectinesterase/pectinesterase inhibitor 100.0
PLN02916 502 pectinesterase family protein 100.0
PLN02698 497 Probable pectinesterase/pectinesterase inhibitor 100.0
PLN02671 359 pectinesterase 100.0
PLN02682 369 pectinesterase family protein 100.0
PLN02304 379 probable pectinesterase 100.0
PLN02773 317 pectinesterase 100.0
PLN02634 359 probable pectinesterase 100.0
PLN02665 366 pectinesterase family protein 100.0
PLN02497 331 probable pectinesterase 100.0
PLN02176 340 putative pectinesterase 99.98
PLN02432 293 putative pectinesterase 99.98
PF01095 298 Pectinesterase: Pectinesterase; InterPro: IPR00007 99.97
PRK10531 422 acyl-CoA thioesterase; Provisional 99.97
PLN02480 343 Probable pectinesterase 99.96
smart00856148 PMEI Plant invertase/pectin methylesterase inhibit 99.96
TIGR01614178 PME_inhib pectinesterase inhibitor domain. This mo 99.95
PF04043152 PMEI: Plant invertase/pectin methylesterase inhibi 99.93
COG4677 405 PemB Pectin methylesterase [Carbohydrate transport 99.88
TIGR03805 314 beta_helix_1 parallel beta-helix repeat-containing 98.81
PF07602 246 DUF1565: Protein of unknown function (DUF1565); In 98.17
PF14592 425 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF 97.78
PF12708 225 Pectate_lyase_3: Pectate lyase superfamily protein 97.07
TIGR03808 455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 96.77
COG3866 345 PelB Pectate lyase [Carbohydrate transport and met 85.83
COG3420 408 NosD Nitrous oxidase accessory protein [Inorganic 84.45
KOG1777 625 consensus Putative Zn-finger protein [General func 83.81
PLN03010 409 polygalacturonase 81.56
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information 
Probab=100.00  E-value=1e-79  Score=635.53  Aligned_cols=366  Identities=62%  Similarity=0.920  Sum_probs=299.7

Q ss_pred             CccccchhhhHHHHHHHHHHhhhccccCCCCCCCCCchhcccCCCCCccchhhhccCCCCCCCCCHHHHHHHHHHHHHHH
Q 045655            1 MASKLFFLKTSPILIALLLFAYPSCAAADVDPTAPVPPETICMCTPNPSDCKSVLPAASPNQTADTYTYCRLSIRKALTQ   80 (377)
Q Consensus         1 ~~~~~~~~~~~~~~ll~~l~~~~~~a~~~~~~~~~~~v~~~C~~T~yp~~C~ssL~~~~~s~~~dp~~l~~iai~~a~~~   80 (377)
                      ||++|--+.++.+  ||||+|+++.+..+ .|.....++.+|+.|+||++|+++|++.   ...+|+++++++|++++++
T Consensus         1 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~s~C~~T~YP~~C~ssLs~s---~~~d~~~l~~aaL~~tl~~   74 (566)
T PLN02713          1 MSSKLILLTTLAL--LLLLFFSSSSASDP-PPSTPVSPSTICNTTPDPSFCKSVLPHN---QPGNVYDYGRFSVRKSLSQ   74 (566)
T ss_pred             CchhHHHHHHHHH--HHHHhcchhhhcCC-CcCCCCCCccccCCCCChHHHHHHhccc---cCCCHHHHHHHHHHHHHHH
Confidence            7888776665554  66777799998884 2344578899999999999999999762   3468999999999999999


Q ss_pred             HHHHHHHHHHHhhcCCC-CCHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCccchhhHHHHHHHHHhhhhhhHhh
Q 045655           81 TQKFLNSVDNYLKSGST-LSISAIRALEDCRLLADLNMDYLSTSYQTANTTSQILPTIQADDVQALLSAILTNQQTCFDG  159 (377)
Q Consensus        81 a~~a~~~i~~l~~~~~~-~d~~~k~aL~DC~el~~~Aid~L~~S~~~l~~~~~~~~~~~~~Dl~TWLSAAlT~q~TC~DG  159 (377)
                      +..+...+..+....+. .+++++.||+||+|||++++|+|++++.+|+......+...++|+|||||||||||+||+||
T Consensus        75 a~~a~~~vs~L~~~~~~~~~~r~k~AL~DC~ELlddavD~L~~Sl~~l~~~~~~~~~~~~~DvqTWLSAALTnq~TClDG  154 (566)
T PLN02713         75 SRKFLSLVDRYLKRNSTLLSKSAIRALEDCQFLAGLNIDFLLSSFETVNSSSKTLSDPQADDVQTLLSAILTNQQTCLDG  154 (566)
T ss_pred             HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHhhcchhhhhhh
Confidence            99999999988654322 38899999999999999999999999999985432223567899999999999999999999


Q ss_pred             hccCCCcccccccccccchhhHHHHHHHHhhhhcccCcccc-cccccc--ccccccccccCCCCCCCcchhhhhhhhHHh
Q 045655          160 LQTSANSFESINNGLSVPLLEDIKLSSVLLALFKKGWIGDQ-KKIITS--WQLSSTQRLVGQNGRLPLVMSDRIRAIYES  236 (377)
Q Consensus       160 F~e~~~~~~~~~~~l~~~l~~~~~L~SNaLAiv~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~P~W~~~~~~~~~~~  236 (377)
                      |.+.+. ...+++.|...+.++.+|+||+|||++.++.... ..+...  ....|++++ .+.++||+||++.||.+++.
T Consensus       155 F~~~~~-~~~~k~~v~~~l~nvt~LtSNaLAlv~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~P~w~~~~d~~~~~~  232 (566)
T PLN02713        155 LQAASS-AWSVRNGLAVPLSNDTKLYSVSLALFTKGWVPKKKKGRPKTKRKAHFKPFRA-FRNGRLPLKMTEKTRAVYES  232 (566)
T ss_pred             hhcccc-chhHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccccccchhc-cccCCCCcCccccccccccc
Confidence            987643 2346677888899999999999999996322111 100000  001233433 23357999999987777765


Q ss_pred             hhcccccccCCCCCCCcceeeEEEEccCCCCCcccHHHHHhhCCCCCCCCCceEEEEEecceeeeEEeeCCCCCceEEEe
Q 045655          237 AVRGRKLSSTGDGDQGVLVTDIVTVAQDGSGNFSTITDAINFAPNNTNVSNGYFLIYITAGVYQEYVSIPKNKINLLMIG  316 (377)
Q Consensus       237 ~~~~r~ll~~~~~~~~~~~~~~~~V~~dg~g~f~TIq~Av~a~p~~~~~~~~~~~I~I~~G~Y~E~v~i~~~k~~i~l~G  316 (377)
                       ..+|||||...  ....+..+++|++||+|+|+|||+||+++|.+.+.+.+|++||||||+|+|+|+||++|+||+|+|
T Consensus       233 -~~~R~ll~~~~--~~~~~~~~~~Va~dGsG~f~TIq~Av~a~p~~~~~~~~~~vI~Ik~G~Y~E~V~i~~~k~~i~l~G  309 (566)
T PLN02713        233 -VSRRKLLDGDA--NAVLVSDIVTVNQNGTGNFTTINDAVAAAPNNTDGSNGYFVIYVTAGVYEEYVSIPKNKKYLMMIG  309 (566)
T ss_pred             -cccchhhcCcc--ccccCCceEEECCCCCCCCCCHHHHHHhhhcccCCCCceEEEEEcCcEEEEEEEecCCCceEEEEe
Confidence             34799999742  223345679999999999999999999999974335689999999999999999999999999999


Q ss_pred             cCCCceEEEccccccCCCCCCcceeEEEEcCCEEEEcceEEeCCCCCCCceEEEEecCCCC
Q 045655          317 DGINQTIITGNRSVVDGWTTFNSATFIVVAPNFVASSITFRNTAGPSKGQAVALRSGADFS  377 (377)
Q Consensus       317 ~g~~~tiI~~~~~~~~g~~t~~sat~~v~~~~f~~~~it~~Ntag~~~~QAvAl~v~~D~~  377 (377)
                      +|+++|||+|++++.+|++||+||||.|.|+||+++||||+|++|+.+|||||||++||++
T Consensus       310 ~g~~~TiIt~~~~~~~g~~T~~SaT~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~  370 (566)
T PLN02713        310 DGINQTVITGNRSVVDGWTTFNSATFAVVGQNFVAVNITFRNTAGPAKHQAVALRSGADLS  370 (566)
T ss_pred             cCCCCcEEEcCCcccCCCccccceeEEEECCCeEEEeeEEEeCCCCCCCceEEEEecCCcE
Confidence            9999999999999999999999999999999999999999999999999999999999985

>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PLN02698 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>PLN02497 probable pectinesterase Back     alignment and domain information
>PLN02176 putative pectinesterase Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>smart00856 PMEI Plant invertase/pectin methylesterase inhibitor Back     alignment and domain information
>TIGR01614 PME_inhib pectinesterase inhibitor domain Back     alignment and domain information
>PF04043 PMEI: Plant invertase/pectin methylesterase inhibitor; InterPro: IPR006501 This entry represents a plant domain of about 200 amino acids, characterised by four conserved cysteine residues Back     alignment and domain information
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans Back     alignment and domain information
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG1777 consensus Putative Zn-finger protein [General function prediction only] Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query377
1gq8_A 319 Pectin Methylesterase From Carrot Length = 319 4e-26
1xg2_A 317 Crystal Structure Of The Complex Between Pectin Met 2e-25
3uw0_A 364 Pectin Methylesterase From Yersinia Enterocolitica 4e-05
2ntb_A 342 Crystal Structure Of Pectin Methylesterase In Compl 7e-04
1qjv_A 342 Pectin Methylesterase Pema From Erwinia Chrysanthem 7e-04
2nsp_A 342 Crystal Structure Of Pectin Methylesterase D178a Mu 7e-04
>pdb|1GQ8|A Chain A, Pectin Methylesterase From Carrot Length = 319 Back     alignment and structure 
Iteration: 1

 Score =  115 bits (288), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 60/119 (50%), Positives = 82/119 (68%), Gaps = 3/119 (2%)
Query: 259 VTVAQDGSGNFSTITDAINFAPNNTNVSNGYFLIYITAGVYQEYVSIPKNKINLLMIGDG 318
           V VA DGSG++ T+++A+  AP ++      ++I I AGVY+E V +PK K N++ +GDG
Sbjct: 9   VVVAADGSGDYKTVSEAVAAAPEDSKTR---YVIRIKAGVYRENVDVPKKKKNIMFLGDG 65
Query: 319 INQTIITGNRSVVDGWTTFNSATFIVVAPNFVASSITFRNTAGPSKGQAVALRSGADFS 377
              TIIT +++V DG TTFNSAT   V   F+A  ITF+NTAG +K QAVALR G+D S
Sbjct: 66  RTSTIITASKNVQDGSTTFNSATVAAVGAGFLARDITFQNTAGAAKHQAVALRVGSDLS 124
>pdb|1XG2|A Chain A, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein Length = 317 Back     alignment and structure
>pdb|3UW0|A Chain A, Pectin Methylesterase From Yersinia Enterocolitica Length = 364 Back     alignment and structure
>pdb|2NTB|A Chain A, Crystal Structure Of Pectin Methylesterase In Complex With Hexasaccharide V Length = 342 Back     alignment and structure
>pdb|1QJV|A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi Length = 342 Back     alignment and structure
>pdb|2NSP|A Chain A, Crystal Structure Of Pectin Methylesterase D178a Mutant In Complex With Hexasaccharide I Length = 342 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query377
1gq8_A 319 Pectinesterase; hydrolase, carboxylic ester hydrol 1e-53
1xg2_A 317 Pectinesterase 1; protein-protein complex, beta he 2e-53
2nsp_A 342 Pectinesterase A; michaelis complex, hydrolase; HE 6e-40
3uw0_A 364 Pectinesterase; right-handed beta-helix, carbohydr 2e-39
3grh_A 422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 2e-35
1x91_A153 Invertase/pectin methylesterase inhibitor family p 9e-17
1xg2_B153 Pectinesterase inhibitor; protein-protein complex, 2e-16
2cj4_A150 Invertase inhibitor; protein binding, four-helix b 1e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Length = 319 Back     alignment and structure
 Score =  179 bits (455), Expect = 1e-53
 Identities = 61/119 (51%), Positives = 82/119 (68%), Gaps = 3/119 (2%)

Query: 259 VTVAQDGSGNFSTITDAINFAPNNTNVSNGYFLIYITAGVYQEYVSIPKNKINLLMIGDG 318
           V VA DGSG++ T+++A+  AP +   S   ++I I AGVY+E V +PK K N++ +GDG
Sbjct: 9   VVVAADGSGDYKTVSEAVAAAPED---SKTRYVIRIKAGVYRENVDVPKKKKNIMFLGDG 65

Query: 319 INQTIITGNRSVVDGWTTFNSATFIVVAPNFVASSITFRNTAGPSKGQAVALRSGADFS 377
              TIIT +++V DG TTFNSAT   V   F+A  ITF+NTAG +K QAVALR G+D S
Sbjct: 66  RTSTIITASKNVQDGSTTFNSATVAAVGAGFLARDITFQNTAGAAKHQAVALRVGSDLS 124
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Length = 317 Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Length = 342 Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Length = 364 Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Length = 422 Back     alignment and structure
>1x91_A Invertase/pectin methylesterase inhibitor family protein; four-helix bundle, alpha hairpin, disulfide bridge, domain- swapping, linker; 1.50A {Arabidopsis thaliana} SCOP: a.29.6.1 PDB: 1x8z_A 1x90_A Length = 153 Back     alignment and structure
>1xg2_B Pectinesterase inhibitor; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Actinidia chinensis} Length = 153 Back     alignment and structure
>2cj4_A Invertase inhibitor; protein binding, four-helix bundle, helical hairpin; 1.63A {Nicotiana tabacum} SCOP: a.29.6.1 PDB: 2cj5_A 2cj6_A 2cj7_A 2cj8_A 1rj1_A 1rj4_A* 2xqr_B* Length = 150 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query377
1xg2_A 317 Pectinesterase 1; protein-protein complex, beta he 99.98
1gq8_A 319 Pectinesterase; hydrolase, carboxylic ester hydrol 99.97
1x91_A153 Invertase/pectin methylesterase inhibitor family p 99.97
1xg2_B153 Pectinesterase inhibitor; protein-protein complex, 99.97
3grh_A 422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 99.97
2cj4_A150 Invertase inhibitor; protein binding, four-helix b 99.96
2nsp_A 342 Pectinesterase A; michaelis complex, hydrolase; HE 99.95
3uw0_A 364 Pectinesterase; right-handed beta-helix, carbohydr 99.95
1ru4_A 400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 99.04
1dbg_A 506 Chondroitinase B; beta helix, polysaccharide lyase 98.57
2inu_A 410 Insulin fructotransferase; right-handed parallel b 97.48
2pyg_A 377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 96.56
1pxz_A 346 Major pollen allergen JUN A 1; parallel beta-helix 93.47
3eqn_A 758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 93.09
1bhe_A 376 PEHA, polygalacturonase; family 28 glycosyl hydrol 90.16
1idk_A 359 Pectin lyase A; signal, glycoprotein, multigene fa 89.48
1qcx_A 359 Pectin lyase B; beta-helix protein, plant cell WAL 88.5
1vcl_A432 Hemolytic lectin CEL-III; hemolysis, hemagglutinat 87.97
1hg8_A 349 Endopolygalacturonase; hydrolase, pectin degradati 87.87
2iq7_A 339 Endopolygalacturonase; parallel beta helix, hydrol 87.71
1h80_A 464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 85.52
1nhc_A 336 Polygalacturonase I; beta-helix, hydrolase; HET: M 84.9
1ia5_A 339 Polygalacturonase; glycosylhydrolase, hydrolase; H 84.16
3zsc_A 340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 83.99
1pcl_A 355 Pectate lyase E; lyase (acting on polysaccharides) 83.9
3eqn_A 758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 83.08
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 82.49
2o04_A 399 Pectate lyase, PL; hexasaccharide compound II, cal 81.79
1pe9_A 361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 81.74
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
Probab=99.98  E-value=1.1e-32  Score=268.00  Aligned_cols=119  Identities=48%  Similarity=0.786  Sum_probs=114.4

Q ss_pred             eeEEEEccCCCCCcccHHHHHhhCCCCCCCCCceEEEEEecceeeeEEeeCCCCCceEEEecCCCceEEEccccccCCCC
Q 045655          256 TDIVTVAQDGSGNFSTITDAINFAPNNTNVSNGYFLIYITAGVYQEYVSIPKNKINLLMIGDGINQTIITGNRSVVDGWT  335 (377)
Q Consensus       256 ~~~~~V~~dg~g~f~TIq~Av~a~p~~~~~~~~~~~I~I~~G~Y~E~v~i~~~k~~i~l~G~g~~~tiI~~~~~~~~g~~  335 (377)
                      +++++|++||+|+|+|||+||+++|++   +++|++|+|+||+|+|+|+|++.|+||+|+|+|+++|+|+|+++..+|++
T Consensus         2 ~~~i~V~~dGsg~f~TIq~AI~aap~~---~~~~~~I~I~~G~Y~E~V~I~~~k~~Itl~G~g~~~tiI~~~~~~~~g~~   78 (317)
T 1xg2_A            2 IANAVVAQDGTGDYQTLAEAVAAAPDK---SKTRYVIYVKRGTYKENVEVASNKMNLMIVGDGMYATTITGSLNVVDGST   78 (317)
T ss_dssp             CCSEEECTTSCSSBSSHHHHHHHSCSS---CSSCEEEEECSEEEECCEEECTTSCSEEEEESCTTTEEEEECCCTTTTCC
T ss_pred             CceEEECCCCCCCcccHHHHHhhcccC---CCceEEEEEcCCEEeeeeecCCCCCcEEEEEcCCCCcEEEecccccCCCc
Confidence            468999999999999999999999998   68899999999999999999999999999999999999999999889999


Q ss_pred             CCcceeEEEEcCCEEEEcceEEeCCCCCCCceEEEEecCCCC
Q 045655          336 TFNSATFIVVAPNFVASSITFRNTAGPSKGQAVALRSGADFS  377 (377)
Q Consensus       336 t~~sat~~v~~~~f~~~~it~~Ntag~~~~QAvAl~v~~D~~  377 (377)
                      |+.|+||.|.+++|+++||||+|++|+.++|||||+++||++
T Consensus        79 t~~satv~v~a~~f~~~~lt~~Nt~g~~~~qAvAl~v~~d~~  120 (317)
T 1xg2_A           79 TFRSATLAAVGQGFILQDICIQNTAGPAKDQAVALRVGADMS  120 (317)
T ss_dssp             SGGGCSEEECSTTCEEESCEEEECCCGGGCCCCSEEECCTTE
T ss_pred             ccceeEEEEECCCEEEEEeEEecccCCccCceEEEEEeCCcE
Confidence            999999999999999999999999999889999999999974
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>1x91_A Invertase/pectin methylesterase inhibitor family protein; four-helix bundle, alpha hairpin, disulfide bridge, domain- swapping, linker; 1.50A {Arabidopsis thaliana} SCOP: a.29.6.1 PDB: 1x8z_A 1x90_A Back     alignment and structure
>1xg2_B Pectinesterase inhibitor; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Actinidia chinensis} Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure
>2cj4_A Invertase inhibitor; protein binding, four-helix bundle, helical hairpin; 1.63A {Nicotiana tabacum} SCOP: a.29.6.1 PDB: 2cj5_A 2cj6_A 2cj7_A 2cj8_A 1rj1_A 1rj4_A* 2xqr_B* Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>1vcl_A Hemolytic lectin CEL-III; hemolysis, hemagglutination, pore-forming, calcium, toxin; HET: BTB; 1.70A {Cucumaria echinata} SCOP: b.42.2.1 b.42.2.1 d.281.1.1 PDB: 2z48_A* 2z49_A* Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 377
d1gq8a_ 319 b.80.1.5 (A:) Pectin methylesterase PemA {Carrot ( 4e-44
d1qjva_ 342 b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia 8e-29
d2cj4a1147 a.29.6.1 (A:4-150) Invertase inhibitor {Common tob 1e-14
d1x91a_149 a.29.6.1 (A:) Pectin methylesterase inhibitor 1, P 1e-13
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Length = 319 Back     information, alignment and structure

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectin methylesterase
domain: Pectin methylesterase PemA
species: Carrot (Daucus carota) [TaxId: 4039]

 Score =  153 bits (387), Expect = 4e-44
 Identities = 61/119 (51%), Positives = 82/119 (68%), Gaps = 3/119 (2%)

Query: 259 VTVAQDGSGNFSTITDAINFAPNNTNVSNGYFLIYITAGVYQEYVSIPKNKINLLMIGDG 318
           V VA DGSG++ T+++A+  AP +   S   ++I I AGVY+E V +PK K N++ +GDG
Sbjct: 9   VVVAADGSGDYKTVSEAVAAAPED---SKTRYVIRIKAGVYRENVDVPKKKKNIMFLGDG 65

Query: 319 INQTIITGNRSVVDGWTTFNSATFIVVAPNFVASSITFRNTAGPSKGQAVALRSGADFS 377
              TIIT +++V DG TTFNSAT   V   F+A  ITF+NTAG +K QAVALR G+D S
Sbjct: 66  RTSTIITASKNVQDGSTTFNSATVAAVGAGFLARDITFQNTAGAAKHQAVALRVGSDLS 124
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Length = 342 Back     information, alignment and structure
>d2cj4a1 a.29.6.1 (A:4-150) Invertase inhibitor {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 147 Back     information, alignment and structure
>d1x91a_ a.29.6.1 (A:) Pectin methylesterase inhibitor 1, PMEI1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 149 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query377
d1gq8a_ 319 Pectin methylesterase PemA {Carrot (Daucus carota) 100.0
d2cj4a1147 Invertase inhibitor {Common tobacco (Nicotiana tab 99.95
d1x91a_149 Pectin methylesterase inhibitor 1, PMEI1 {Thale cr 99.95
d1qjva_ 342 Pectin methylesterase PemA {Erwinia chrysanthemi [ 99.93
d1ru4a_ 400 Pectate transeliminase {Erwinia chrysanthemi [TaxI 98.7
d1ofla_ 481 Chondroitinase B {Pedobacter heparinus [TaxId: 984 98.45
d1bhea_ 376 Polygalacturonase {Erwinia carotovora, subsp. caro 95.68
d1bn8a_ 399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 91.34
d1qcxa_ 359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 87.27
d1idka_ 359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 84.82
d1pcla_ 355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 84.31
d1pxza_ 346 Major pollen allergen Jun a 1 {Ozark white cedar ( 82.18
d1pe9a_ 361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 81.59
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectin methylesterase
domain: Pectin methylesterase PemA
species: Carrot (Daucus carota) [TaxId: 4039]

Probab=100.00  E-value=1.9e-35  Score=284.44  Aligned_cols=121  Identities=51%  Similarity=0.776  Sum_probs=116.7

Q ss_pred             ceeeEEEEccCCCCCcccHHHHHhhCCCCCCCCCceEEEEEecceeeeEEeeCCCCCceEEEecCCCceEEEccccccCC
Q 045655          254 LVTDIVTVAQDGSGNFSTITDAINFAPNNTNVSNGYFLIYITAGVYQEYVSIPKNKINLLMIGDGINQTIITGNRSVVDG  333 (377)
Q Consensus       254 ~~~~~~~V~~dg~g~f~TIq~Av~a~p~~~~~~~~~~~I~I~~G~Y~E~v~i~~~k~~i~l~G~g~~~tiI~~~~~~~~g  333 (377)
                      .++++++|++||+|+|+|||+||+++|.+   ++.|++|+|+||+|+|+|+||++|+||+|+|+|++.|+|+|+.+..++
T Consensus         4 ~~~p~i~V~~dGsGdf~TIq~AIda~p~~---~~~~~~I~I~~G~Y~E~V~I~~~k~~itl~G~g~~~tiIt~~~~~~~~   80 (319)
T d1gq8a_           4 TVGPNVVVAADGSGDYKTVSEAVAAAPED---SKTRYVIRIKAGVYRENVDVPKKKKNIMFLGDGRTSTIITASKNVQDG   80 (319)
T ss_dssp             SSCCSEEECTTSCSSBSSHHHHHHHSCSS---CSSCEEEEECSEEEECCEEECTTCCSEEEEESCTTTEEEEECCCTTTT
T ss_pred             cCCCCEEECCCCCCCccCHHHHHhhCccC---CCCcEEEEEcCceEEEEEEECCCCCeEEEEEcCCCCcEEEecccccCC
Confidence            36788999999999999999999999998   789999999999999999999999999999999999999999999999


Q ss_pred             CCCCcceeEEEEcCCEEEEcceEEeCCCCCCCceEEEEecCCCC
Q 045655          334 WTTFNSATFIVVAPNFVASSITFRNTAGPSKGQAVALRSGADFS  377 (377)
Q Consensus       334 ~~t~~sat~~v~~~~f~~~~it~~Ntag~~~~QAvAl~v~~D~~  377 (377)
                      .+|+.|+||.|.+++|+++||||+|++|+.++||||||++|||+
T Consensus        81 ~~t~~sat~~v~~~~f~a~nitf~Nt~g~~~~QAvAl~v~gd~~  124 (319)
T d1gq8a_          81 STTFNSATVAAVGAGFLARDITFQNTAGAAKHQAVALRVGSDLS  124 (319)
T ss_dssp             CCTGGGCSEEECSTTCEEEEEEEEECCCGGGCCCCSEEECCTTE
T ss_pred             CccccccceeeecCCeEEEeeEEEeCCCCCCCcEEEEEecCcce
Confidence            99999999999999999999999999999899999999999984
>d2cj4a1 a.29.6.1 (A:4-150) Invertase inhibitor {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
>d1x91a_ a.29.6.1 (A:) Pectin methylesterase inhibitor 1, PMEI1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure