Citrus Sinensis ID: 045800
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 269 | ||||||
| 224089615 | 432 | predicted protein [Populus trichocarpa] | 0.936 | 0.583 | 0.316 | 2e-26 | |
| 255540357 | 429 | 3'-N-debenzoyl-2'-deoxytaxol N-benzoyltr | 0.947 | 0.594 | 0.286 | 1e-23 | |
| 224123764 | 432 | predicted protein [Populus trichocarpa] | 0.921 | 0.574 | 0.301 | 4e-20 | |
| 225425908 | 433 | PREDICTED: vinorine synthase-like [Vitis | 0.962 | 0.598 | 0.263 | 6e-20 | |
| 357493119 | 363 | Salutaridinol 7-O-acetyltransferase [Med | 0.951 | 0.705 | 0.270 | 7e-20 | |
| 147800921 | 392 | hypothetical protein VITISV_008568 [Viti | 0.754 | 0.517 | 0.331 | 8e-19 | |
| 224141095 | 430 | predicted protein [Populus trichocarpa] | 0.639 | 0.4 | 0.333 | 8e-19 | |
| 449515991 | 434 | PREDICTED: BAHD acyltransferase At5g4798 | 0.977 | 0.605 | 0.263 | 2e-18 | |
| 449469643 | 434 | PREDICTED: BAHD acyltransferase At5g4798 | 0.977 | 0.605 | 0.263 | 2e-18 | |
| 357463119 | 496 | Vinorine synthase [Medicago truncatula] | 0.851 | 0.461 | 0.254 | 7e-18 |
| >gi|224089615|ref|XP_002308780.1| predicted protein [Populus trichocarpa] gi|222854756|gb|EEE92303.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 104/329 (31%), Positives = 156/329 (47%), Gaps = 77/329 (23%)
Query: 5 QQLIPPSPQLSNLEISEREL-LAVQVNLFNSGEMAIGVCFSHGVADVPTAVS-------- 55
QQL+P SP + ++S ++ LAVQVN FN G +AI +C H VAD T +
Sbjct: 113 QQLLPCSPYGKSSKLSTDQVTLAVQVNYFNCGGVAISICIWHAVADASTLATFVNCWAAI 172
Query: 56 --DPK----------PTIF--------------TQDCVQKIVVRRQEDSNSKGEALI--W 87
DP T+F +D +IV++R SK AL
Sbjct: 173 SRDPNNVIDEVVFDCTTLFPPQDLSSFSLHSFVKEDVSSEIVMKRFLFDGSKVAALRDEV 232
Query: 88 GASIAVAR-ERKRAIDNMLYSHSMYYT--------------MNLRNKMNPPMFPRCMGNI 132
G ++ R R A+ ++ + M T ++LR ++ PP+ + +GNI
Sbjct: 233 GNGPSLDRPSRFIAVSTLILTAMMTVTRENEAMQINAATIAVDLRRRLKPPVPKQSIGNI 292
Query: 133 FRLVRAEWSLAEDDAIDVTNLVRAVIKAKRMGRDVMNND---------EYLDFIKDLYEA 183
F++ A+W +E + + L + ++ RM MN+D Y +F+K +
Sbjct: 293 FQVTIAKWPESESNELSYNGLAGKLHESIRM----MNDDFIRKFHAGGGYFNFLK---RS 345
Query: 184 WEDSRS------FPLTSVVGLPYYEVDFGWGKPVWFSLGPIL-LPDIAILSSTSDGEGIE 236
E++R F +S P+YE DFGWGKP+W L P L L +AI T DGEGIE
Sbjct: 346 GEEARKGSNVTVFGFSSWCNFPFYETDFGWGKPLW--LSPALKLNRVAIFLDTKDGEGIE 403
Query: 237 ALVVMFKEDMENFEQETNIMAYASANPSI 265
A + + +EDM FEQ+ I+ YAS +PSI
Sbjct: 404 AWIGLSEEDMVKFEQDPGILTYASFSPSI 432
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255540357|ref|XP_002511243.1| 3'-N-debenzoyl-2'-deoxytaxol N-benzoyltransferase, putative [Ricinus communis] gi|223550358|gb|EEF51845.1| 3'-N-debenzoyl-2'-deoxytaxol N-benzoyltransferase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
| >gi|224123764|ref|XP_002330202.1| predicted protein [Populus trichocarpa] gi|222871658|gb|EEF08789.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|225425908|ref|XP_002271612.1| PREDICTED: vinorine synthase-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|357493119|ref|XP_003616848.1| Salutaridinol 7-O-acetyltransferase [Medicago truncatula] gi|355518183|gb|AES99806.1| Salutaridinol 7-O-acetyltransferase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
| >gi|147800921|emb|CAN71181.1| hypothetical protein VITISV_008568 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|224141095|ref|XP_002323910.1| predicted protein [Populus trichocarpa] gi|222866912|gb|EEF04043.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|449515991|ref|XP_004165031.1| PREDICTED: BAHD acyltransferase At5g47980-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|449469643|ref|XP_004152528.1| PREDICTED: BAHD acyltransferase At5g47980-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|357463119|ref|XP_003601841.1| Vinorine synthase [Medicago truncatula] gi|355490889|gb|AES72092.1| Vinorine synthase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 269 | ||||||
| TAIR|locus:2102936 | 443 | AT3G30280 [Arabidopsis thalian | 0.665 | 0.404 | 0.309 | 1.5e-21 | |
| TAIR|locus:2092090 | 442 | AT3G26040 [Arabidopsis thalian | 0.650 | 0.395 | 0.287 | 1.6e-19 | |
| TAIR|locus:2024036 | 435 | AT1G24430 [Arabidopsis thalian | 0.594 | 0.367 | 0.272 | 6.5e-19 | |
| TAIR|locus:2130065 | 446 | AT4G15390 [Arabidopsis thalian | 0.312 | 0.188 | 0.379 | 4.3e-16 | |
| TAIR|locus:2024061 | 436 | AT1G24420 [Arabidopsis thalian | 0.568 | 0.350 | 0.298 | 8.7e-15 | |
| TAIR|locus:2152783 | 426 | AT5G47950 [Arabidopsis thalian | 0.304 | 0.192 | 0.423 | 3.6e-14 | |
| TAIR|locus:2178667 | 428 | AT5G23970 [Arabidopsis thalian | 0.565 | 0.355 | 0.266 | 9.5e-13 | |
| TAIR|locus:2152763 | 443 | AT5G47980 [Arabidopsis thalian | 0.293 | 0.178 | 0.365 | 3e-12 | |
| TAIR|locus:2130075 | 435 | BIA1 "BRASSINOSTEROID INACTIVA | 0.643 | 0.397 | 0.279 | 1.9e-10 | |
| TAIR|locus:2154334 | 433 | HCT "hydroxycinnamoyl-CoA shik | 0.684 | 0.424 | 0.246 | 1.4e-05 |
| TAIR|locus:2102936 AT3G30280 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 208 (78.3 bits), Expect = 1.5e-21, Sum P(2) = 1.5e-21
Identities = 61/197 (30%), Positives = 99/197 (50%)
Query: 84 ALIWGASIAVARERKRAIDNMLYSHSMYYTMNLRNKMNPPMFPRCMGNI-FRLVRAEWSL 142
AL+W A +A A A D + + NLR K+ + +GNI F V S
Sbjct: 252 ALLWKAFVAAASSNTNACDMKV----LIQPSNLRPKIPSLLAESLIGNIMFSSVVLGISQ 307
Query: 143 AEDDAID--VTNL------VRAVIKAKRMGRDVMNNDEYLDFIKDLYE--AWEDSRSFPL 192
E+ I+ V +L ++ VIK + M + + + Y ++E + +
Sbjct: 308 QEEIKIEKAVRDLRKQGDDLQNVIKEEGGSSSAMIGSKLANLMLTNYSKLSYETHEPYTV 367
Query: 193 TSVVGLPYYEVDFGWGKPVWFS--LGPILLPDIAILSSTSDGEGIEALVVMFKEDMENFE 250
+S LP YE FGWG PVW + + P +L ++ +L + DG+GIEA V + +E+M + E
Sbjct: 368 SSWCKLPLYEASFGWGSPVWIAGNVAP-MLENVTMLIDSKDGQGIEAFVTLPEENMLSLE 426
Query: 251 QETNIMAYASANPSIFI 267
Q T ++A+AS NPS+ +
Sbjct: 427 QNTELLAFASVNPSVLV 443
|
|
| TAIR|locus:2092090 AT3G26040 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2024036 AT1G24430 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2130065 AT4G15390 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2024061 AT1G24420 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2152783 AT5G47950 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2178667 AT5G23970 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2152763 AT5G47980 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2130075 BIA1 "BRASSINOSTEROID INACTIVATOR1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2154334 HCT "hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| estExt_fgenesh4_pg.C_LG_VI0095 | hypothetical protein (433 aa) | |||||||
(Populus trichocarpa) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 269 | |||
| pfam02458 | 432 | pfam02458, Transferase, Transferase family | 1e-17 | |
| PLN00140 | 444 | PLN00140, PLN00140, alcohol acetyltransferase fami | 3e-15 | |
| PLN00140 | 444 | PLN00140, PLN00140, alcohol acetyltransferase fami | 1e-06 | |
| PLN02481 | 436 | PLN02481, PLN02481, Omega-hydroxypalmitate O-ferul | 1e-06 | |
| pfam02458 | 432 | pfam02458, Transferase, Transferase family | 8e-06 | |
| PLN02663 | 431 | PLN02663, PLN02663, hydroxycinnamoyl-CoA:shikimate | 3e-05 |
| >gnl|CDD|217048 pfam02458, Transferase, Transferase family | Back alignment and domain information |
|---|
Score = 81.3 bits (201), Expect = 1e-17
Identities = 46/150 (30%), Positives = 76/150 (50%), Gaps = 7/150 (4%)
Query: 110 MYYTMNLRNKMNPPMFPRCMGNIFRLVRAEWSLAE---DDAIDVTNLVRAVIKAKRMGRD 166
+ +N+R+++NPP+ P GN + V A+ + AE + + LV+ K
Sbjct: 279 LGQAVNIRSRLNPPLPPGYFGNAYFSVVAKSTAAELESNPLGWIAELVKEAKKKVIDDEY 338
Query: 167 VMNNDEYLDFIKDL---YEAWEDSRSFPLTSVVGLPYYEVDFGWGKPVWFSLGPILLPDI 223
+ + ++++ L YE +D +F ++S P+YEVDFGWGKPV+ DI
Sbjct: 339 LESVIDWVENSLPLKGFYEGTKDDPAFLVSSWCRFPFYEVDFGWGKPVYVGPVVPPFGDI 398
Query: 224 AIL-SSTSDGEGIEALVVMFKEDMENFEQE 252
+L S D G+E V + +E M FE+E
Sbjct: 399 VLLIPSPGDDGGVEVAVCLPEEAMSKFEKE 428
|
This family includes a number of transferase enzymes. These include anthranilate N-hydroxycinnamoyl/benzoyltransferase that catalyzes the first committed reaction of phytoalexin biosynthesis. Deacetylvindoline 4-O-acetyltransferase EC:2.3.1.107 catalyzes the last step in vindoline biosynthesis is also a member of this family. The motif HXXXD is probably part of the active site. The family also includes trichothecene 3-O-acetyltransferase. Length = 432 |
| >gnl|CDD|165708 PLN00140, PLN00140, alcohol acetyltransferase family protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|165708 PLN00140, PLN00140, alcohol acetyltransferase family protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|215266 PLN02481, PLN02481, Omega-hydroxypalmitate O-feruloyl transferase | Back alignment and domain information |
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| >gnl|CDD|217048 pfam02458, Transferase, Transferase family | Back alignment and domain information |
|---|
| >gnl|CDD|166304 PLN02663, PLN02663, hydroxycinnamoyl-CoA:shikimate/quinate hydroxycinnamoyltransferase | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 269 | |||
| PLN00140 | 444 | alcohol acetyltransferase family protein; Provisio | 100.0 | |
| PLN03157 | 447 | spermidine hydroxycinnamoyl transferase; Provision | 100.0 | |
| PLN02663 | 431 | hydroxycinnamoyl-CoA:shikimate/quinate hydroxycinn | 100.0 | |
| PLN02481 | 436 | Omega-hydroxypalmitate O-feruloyl transferase | 100.0 | |
| PF02458 | 432 | Transferase: Transferase family; InterPro: IPR0034 | 100.0 | |
| PF07247 | 480 | AATase: Alcohol acetyltransferase; InterPro: IPR01 | 97.13 | |
| PRK09294 | 416 | acyltransferase PapA5; Provisional | 96.08 | |
| COG4908 | 439 | Uncharacterized protein containing a NRPS condensa | 93.1 | |
| PF00668 | 301 | Condensation: Condensation domain; InterPro: IPR00 | 88.9 |
| >PLN00140 alcohol acetyltransferase family protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-57 Score=420.30 Aligned_cols=260 Identities=27% Similarity=0.485 Sum_probs=205.9
Q ss_pred ccccCCCCCCCCCCccccccceEEEEEeeecCCeeEEEecccccccccCCCCC-----------C------C--CCC--c
Q 045800 3 LLQQLIPPSPQLSNLEISERELLAVQVNLFNSGEMAIGVCFSHGVADVPTAVS-----------D------P--KPT--I 61 (269)
Q Consensus 3 ~~~~lvp~~~~~~~~~~~~~Pll~vQvt~f~cGG~~lg~~~~H~v~Dg~~~~~-----------~------P--~~~--~ 61 (269)
.+++|+|..+........+.|+++||||+|+|||++||+++||+++||.|+++ . | ++. .
T Consensus 114 ~~~~l~p~~~~~~~~~~~~~Pll~vQvT~F~cGG~~lG~~~~H~v~Dg~s~~~Fl~~WA~~~rg~~~~~~~P~~dr~~~~ 193 (444)
T PLN00140 114 LLNKFLPCQPFSYESDPEAIPQVAIQVNTFDCGGIALGLCFSHKIIDAATASAFLDSWAANTRGHYSEVINPDLFEASSF 193 (444)
T ss_pred HHHhhCCCCcccccCCccCCceEEEEEEEeccCcEEEEeeeceEcccHHHHHHHHHHHHHHhcCCCCCCCCccccccccc
Confidence 45778886543111112347999999999999999999999999999999988 1 3 221 2
Q ss_pred cC--------------------CcceEEEEEecc--------cc-------CCchh--hHHHHHHHHHHhccccccCCce
Q 045800 62 FT--------------------QDCVQKIVVRRQ--------ED-------SNSKG--EALIWGASIAVARERKRAIDNM 104 (269)
Q Consensus 62 ~p--------------------p~~~~~~f~f~~--------~~-------~~~~~--~A~iW~~~~~Ar~~~~~~~~~~ 104 (269)
+| +++++++|+|+. ++ .++|| +||+|||++||++...+.++++
T Consensus 194 ~p~~~~~~~~~~~~~~~~~~~~~~~v~~~f~fs~~~I~~LK~~~~~~~~~~~S~~e~vsA~iWr~~~rA~~~~~~~~~~~ 273 (444)
T PLN00140 194 FPPLNSFPVQFLLLMEENWFFKENYITKRFVFDAKAIATLRAKAKSKRVPNPSRIETLSCFIWKCCTAASRSISAAPRPS 273 (444)
T ss_pred CCCCCcccccccccccccccccCceEEEEEEECHHHHHHHHHhcccccCCCCchhHHHHHHHHHHHHHHhhhccCCCCce
Confidence 22 146889999991 22 13478 9999999999975432224678
Q ss_pred eEEeeccccccCCCCCCCCCCCCcccceeeeeeeecccccccccCHHHHHHHHHHHHhc-Ccccccch-hHHH--HHHHH
Q 045800 105 LYSHSMYYTMNLRNKMNPPMFPRCMGNIFRLVRAEWSLAEDDAIDVTNLVRAVIKAKRM-GRDVMNND-EYLD--FIKDL 180 (269)
Q Consensus 105 ~l~~~~~~~vd~R~rl~pplP~~y~GN~~~~~~~~~~~~~l~~~~l~~~a~~Ir~ai~~-~~~~~~~~-~~~~--~~~~~ 180 (269)
.+.+ +||+|+|++||||++||||++..+.+..+.+|+ ..+|.++|..||+++++ +++|+++. ++.+ ...++
T Consensus 274 ~~~~----~vn~R~Rl~PpLP~~y~GN~i~~~~~~~~~~~~-~~~l~~~a~~Ir~~i~~~~~e~~~s~~~~~~~~~~~~~ 348 (444)
T PLN00140 274 ISVH----AVNIRQRTKPPMSRYSIGNLFWWALAAADPADT-KIELNELVSLTRESIANYNSDYLKSLQGENGLEGMSEY 348 (444)
T ss_pred EEEE----EEeccccCCCCCCcccccchhhhheeccccccc-ccchHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHH
Confidence 8999 999999999999999999999999888888886 58899999999999999 99999954 3321 11111
Q ss_pred hh---h-c-CCCCcEEEecCCCCCCccccccCCceeEeeeCC---CCCCcEEEEeeCCCCCcEEEEEEcCHHHHHHHhcC
Q 045800 181 YE---A-W-EDSRSFPLTSVVGLPYYEVDFGWGKPVWFSLGP---ILLPDIAILSSTSDGEGIEALVVMFKEDMENFEQE 252 (269)
Q Consensus 181 ~~---~-~-~~~~~~~vssw~~~~~y~~DFG~GkP~~v~~~~---~~~~g~v~l~p~~~~~giev~v~L~~~~m~~l~~d 252 (269)
.. . . ..++.+.+|||+||++||+|||||||.|+++.. ....|+++++++++++|+||+|+|++++|++|++|
T Consensus 349 ~~~~~~~~~~~~~~~~vssw~r~~~ye~DFGwGkP~~v~~~~~~~~~~~~~~~l~~~~~~~giev~v~L~~~~M~~f~~d 428 (444)
T PLN00140 349 LNQLVGIFSEEPEIFLFSSWLNFGLNDVDFGWGKPIWVGLLGEVGPAFRNLTVFKETGDNNGIEAWITLDEKIMAILERD 428 (444)
T ss_pred HHHHhhcccCCCceEEecccccCCccccccCCCCceeeecccccCCcccceEEEEecCCCCeEEEEEecCHHHHHHHhhC
Confidence 11 1 1 223446899999999999999999999998874 24578999999987889999999999999999999
Q ss_pred hhhhhhhccCCCCcc
Q 045800 253 TNIMAYASANPSIFI 267 (269)
Q Consensus 253 ~~~~~~~~~~~~~~~ 267 (269)
+||++|+++||+|+.
T Consensus 429 ~e~l~~~~~~~~~~~ 443 (444)
T PLN00140 429 PEFLAFATPNPSISM 443 (444)
T ss_pred HHHHhhcCCCCCCCC
Confidence 999999999999874
|
|
| >PLN03157 spermidine hydroxycinnamoyl transferase; Provisional | Back alignment and domain information |
|---|
| >PLN02663 hydroxycinnamoyl-CoA:shikimate/quinate hydroxycinnamoyltransferase | Back alignment and domain information |
|---|
| >PLN02481 Omega-hydroxypalmitate O-feruloyl transferase | Back alignment and domain information |
|---|
| >PF02458 Transferase: Transferase family; InterPro: IPR003480 This family includes a number of transferase enzymes | Back alignment and domain information |
|---|
| >PF07247 AATase: Alcohol acetyltransferase; InterPro: IPR010828 This family contains a number of alcohol acetyltransferase (2 | Back alignment and domain information |
|---|
| >PRK09294 acyltransferase PapA5; Provisional | Back alignment and domain information |
|---|
| >COG4908 Uncharacterized protein containing a NRPS condensation (elongation) domain [General function prediction only] | Back alignment and domain information |
|---|
| >PF00668 Condensation: Condensation domain; InterPro: IPR001242 This domain is found in many multi-domain enzymes which synthesize peptide antibiotics | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 269 | ||||
| 2bgh_A | 421 | Crystal Structure Of Vinorine Synthase Length = 421 | 1e-15 | ||
| 4g2m_A | 439 | Structure Of A Lys-Hct Mutant From Coffea Canephora | 2e-05 | ||
| 4g22_A | 439 | Structure Of A Lys-Hct Mutant From Coffea Canephora | 2e-05 | ||
| 4g0b_A | 436 | Structure Of Native Hct From Coffea Canephora Lengt | 5e-05 |
| >pdb|2BGH|A Chain A, Crystal Structure Of Vinorine Synthase Length = 421 | Back alignment and structure |
|
| >pdb|4G2M|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora (Crystal Form 2) Length = 439 | Back alignment and structure |
| >pdb|4G22|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora (Crystal Form 1) Length = 439 | Back alignment and structure |
| >pdb|4G0B|A Chain A, Structure Of Native Hct From Coffea Canephora Length = 436 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 269 | |||
| 2bgh_A | 421 | Vinorine synthase; VS, BAHD, acetyltransferase, au | 5e-40 | |
| 2e1v_A | 454 | Acyl transferase; BAHD superfamily, seleno-methion | 3e-26 | |
| 2e1v_A | 454 | Acyl transferase; BAHD superfamily, seleno-methion | 2e-05 | |
| 4g22_A | 439 | Hydroxycinnamoyl-COA shikimate/quinate hydroxycinn | 4e-26 | |
| 4g22_A | 439 | Hydroxycinnamoyl-COA shikimate/quinate hydroxycinn | 3e-07 | |
| 2xr7_A | 453 | Malonyltransferase; xenobiotics, naphthols; HET: M | 6e-25 | |
| 2xr7_A | 453 | Malonyltransferase; xenobiotics, naphthols; HET: M | 2e-05 | |
| 2rkv_A | 451 | Trichothecene 3-O-acetyltransferase; BAHD superfam | 5e-23 |
| >2bgh_A Vinorine synthase; VS, BAHD, acetyltransferase, auto-rickshaw, transferase; 2.6A {Rauvolfia serpentina} Length = 421 | Back alignment and structure |
|---|
Score = 142 bits (360), Expect = 5e-40
Identities = 70/317 (22%), Positives = 122/317 (38%), Gaps = 66/317 (20%)
Query: 2 ELLQQLIPPSP-QLSNLEISERELLAVQVNLFNSGEMAIGVCFSHGVAD----------- 49
E L Q +P + +E++E LAV+++ F G AIGV SH +AD
Sbjct: 116 EKLDQYLPSAAYPGGKIEVNEDVPLAVKISFFECGGTAIGVNLSHKIADVLSLATFLNAW 175
Query: 50 ---------------------VPTAVSDPKPTI------------FTQDCVQKIVVRRQE 76
P + P P + F ++ + + +
Sbjct: 176 TATCRGETEIVLPNFDLAARHFPPVDNTPSPELVPDENVVMKRFVFDKEKIGALRAQASS 235
Query: 77 DSNSKGE-------ALIWGASIAVARERKRAIDNMLYSHSMYYTMNLRNKMNPPMFPRCM 129
S K A IW + K N + +NLR++MNPP+ M
Sbjct: 236 ASEEKNFSRVQLVVAYIW-KHVIDVTRAKYGAKNKFV---VVQAVNLRSRMNPPLPHYAM 291
Query: 130 GNIFRLVRAEWSLAEDDAIDVTNLVRAVIKAKRMGRDVMNNDEYLDFIKDLYEAWE--DS 187
GNI L+ A ++ + D +L+ + + +D + +K + +E
Sbjct: 292 GNIATLLFA--AVDAEWDKDFPDLIGPLRTSLEK----TEDDHNHELLKGMTCLYELEPQ 345
Query: 188 RSFPLTSVVGLPYYEVDFGWGKPVWFSLGPILLPDIAILSSTSDGEGIEALVVMFKEDME 247
TS L +Y++DFGWGKP+ + A+L T G+G+EA + M +++M
Sbjct: 346 ELLSFTSWCRLGFYDLDFGWGKPLSACTTTFPKRNAALLMDTRSGDGVEAWLPMAEDEMA 405
Query: 248 NFEQETNIMAYASANPS 264
E +++ ++ S
Sbjct: 406 MLPVE--LLSLVDSDFS 420
|
| >2e1v_A Acyl transferase; BAHD superfamily, seleno-methionine derivative, dendranthema morifolium, DMAT; 1.80A {Chrysanthemum x morifolium} PDB: 2e1u_A 2e1t_A Length = 454 | Back alignment and structure |
|---|
| >2e1v_A Acyl transferase; BAHD superfamily, seleno-methionine derivative, dendranthema morifolium, DMAT; 1.80A {Chrysanthemum x morifolium} PDB: 2e1u_A 2e1t_A Length = 454 | Back alignment and structure |
|---|
| >4g22_A Hydroxycinnamoyl-COA shikimate/quinate hydroxycinnamoyltransferase; BAHD superfamily; 1.70A {Coffea canephora} PDB: 4g2m_A 4g0b_A Length = 439 | Back alignment and structure |
|---|
| >4g22_A Hydroxycinnamoyl-COA shikimate/quinate hydroxycinnamoyltransferase; BAHD superfamily; 1.70A {Coffea canephora} PDB: 4g2m_A 4g0b_A Length = 439 | Back alignment and structure |
|---|
| >2xr7_A Malonyltransferase; xenobiotics, naphthols; HET: MLC; 3.10A {Nicotiana tabacum} Length = 453 | Back alignment and structure |
|---|
| >2xr7_A Malonyltransferase; xenobiotics, naphthols; HET: MLC; 3.10A {Nicotiana tabacum} Length = 453 | Back alignment and structure |
|---|
| >2rkv_A Trichothecene 3-O-acetyltransferase; BAHD superfamily, deoxyniv T-2, acetyl COA, fusarium; HET: COA MPO ZBA; 1.60A {Gibberella zeae} PDB: 3b2s_A* 3b30_A* 2rkt_A* 2zba_A* Length = 451 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 269 | |||
| 2bgh_A | 421 | Vinorine synthase; VS, BAHD, acetyltransferase, au | 100.0 | |
| 4g22_A | 439 | Hydroxycinnamoyl-COA shikimate/quinate hydroxycinn | 100.0 | |
| 2e1v_A | 454 | Acyl transferase; BAHD superfamily, seleno-methion | 100.0 | |
| 2xr7_A | 453 | Malonyltransferase; xenobiotics, naphthols; HET: M | 100.0 | |
| 2rkv_A | 451 | Trichothecene 3-O-acetyltransferase; BAHD superfam | 100.0 | |
| 1q9j_A | 422 | PAPA5, polyketide synthase associated protein 5; c | 86.7 | |
| 1l5a_A | 436 | Amide synthase, VIBH; nonribosomal peptide synthet | 82.91 | |
| 4hvm_A | 493 | Tlmii; PSI-biology, midwest center for structural | 82.16 | |
| 2jgp_A | 520 | Tyrocidine synthetase 3; multifunctional enzyme, a | 80.65 |
| >2bgh_A Vinorine synthase; VS, BAHD, acetyltransferase, auto-rickshaw, transferase; 2.6A {Rauvolfia serpentina} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-52 Score=388.42 Aligned_cols=249 Identities=28% Similarity=0.451 Sum_probs=203.9
Q ss_pred ccccCCCCCCCCCC--ccccccceEEEEEeeecCCeeEEEecccccccccCCCCC-----------C-----C--CC--C
Q 045800 3 LLQQLIPPSPQLSN--LEISERELLAVQVNLFNSGEMAIGVCFSHGVADVPTAVS-----------D-----P--KP--T 60 (269)
Q Consensus 3 ~~~~lvp~~~~~~~--~~~~~~Pll~vQvt~f~cGG~~lg~~~~H~v~Dg~~~~~-----------~-----P--~~--~ 60 (269)
.+++|+|.... .. .+..+.|+++||||+|+|||++||+++||.++||.|+++ + | ++ .
T Consensus 117 ~~~~l~p~~~~-~~~~~~~~~~pll~vQvt~f~cgG~~lg~~~~H~v~Dg~~~~~fl~~wa~~~rg~~~~~~P~~dr~~~ 195 (421)
T 2bgh_A 117 KLDQYLPSAAY-PGGKIEVNEDVPLAVKISFFECGGTAIGVNLSHKIADVLSLATFLNAWTATCRGETEIVLPNFDLAAR 195 (421)
T ss_dssp GGGGGSSSCSS-SSSSSCCCTTCSEEEEEEECTTSCEEEEEEEETTTCCHHHHHHHHHHHHHHHTTCSCCCCCBCSHHHH
T ss_pred HHHhcCCCCCC-ccccccccCCceEEEEEEEEcCCCEEEEEEeeEEechHHHHHHHHHHHHHHhcCCCCCCCCccccccc
Confidence 46788887622 11 013457999999999999999999999999999999988 1 3 33 1
Q ss_pred ccC-------------CcceEEEEEecc--------cc--------CCchh--hHHHHHHHHHHhccccccCCceeEEee
Q 045800 61 IFT-------------QDCVQKIVVRRQ--------ED--------SNSKG--EALIWGASIAVARERKRAIDNMLYSHS 109 (269)
Q Consensus 61 ~~p-------------p~~~~~~f~f~~--------~~--------~~~~~--~A~iW~~~~~Ar~~~~~~~~~~~l~~~ 109 (269)
++| +++++++|+|+. ++ .++|| +||+|||+++||....+.++++.+.+
T Consensus 196 l~p~~~~~~~~~~~~~~~~~~~~f~f~~~~i~~LK~~a~~~~~~~~~St~d~l~A~iW~~~~~Ar~~~~~~~~~~~l~~- 274 (421)
T 2bgh_A 196 HFPPVDNTPSPELVPDENVVMKRFVFDKEKIGALRAQASSASEEKNFSRVQLVVAYIWKHVIDVTRAKYGAKNKFVVVQ- 274 (421)
T ss_dssp HSCCCTTCCCCCCCCCSSEEEEEEEECHHHHHHHHHHTC-----CCCCHHHHHHHHHHHHHHHHHHHHSCCCSCEEEEE-
T ss_pred cCCCcccCCCCccCCccceEEEEEEECHHHHHHHHHHhhccCCCCCCchhHhHHHHHHHHHHHHhcccCCCCCceEEEE-
Confidence 222 257899999991 22 14477 99999999999976433357889999
Q ss_pred ccccccCCCCCCCCCCCCcccceeeeeeeecccccccccCHHHHHHHHHHHHhc-Ccccccch-hHHHHHHHHhhhcCCC
Q 045800 110 MYYTMNLRNKMNPPMFPRCMGNIFRLVRAEWSLAEDDAIDVTNLVRAVIKAKRM-GRDVMNND-EYLDFIKDLYEAWEDS 187 (269)
Q Consensus 110 ~~~~vd~R~rl~pplP~~y~GN~~~~~~~~~~~~~l~~~~l~~~a~~Ir~ai~~-~~~~~~~~-~~~~~~~~~~~~~~~~ 187 (269)
+||+|+|++||+|++|+||++..+.+.+++++ +.+|+++|.+||+++.+ +++|+++. ++.+.. . ..+..
T Consensus 275 ---~vd~R~rl~pplP~~y~GN~~~~~~~~~~~~~--~~~l~~~a~~ir~ai~~~~~~~~~~~~~~~~~~---~-~~~~~ 345 (421)
T 2bgh_A 275 ---AVNLRSRMNPPLPHYAMGNIATLLFAAVDAEW--DKDFPDLIGPLRTSLEKTEDDHNHELLKGMTCL---Y-ELEPQ 345 (421)
T ss_dssp ---EEESGGGSSSCCCTTBCSCCEEEEEEEECTTC--CCCGGGGHHHHHHHTCCCSSCHHHHHHHHHHHH---H-TSCGG
T ss_pred ---EecCccccCCCCCCCccceEEEEEEEEecccc--cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---h-ccCCC
Confidence 99999999999999999999999998888875 78999999999999999 99898843 333211 1 11223
Q ss_pred CcEEEecCCCCCCccccccCCceeEeeeCCCCCCcEEEEeeCCCCCcEEEEEEcCHHHHHHHhcChhhhhhhccCCC
Q 045800 188 RSFPLTSVVGLPYYEVDFGWGKPVWFSLGPILLPDIAILSSTSDGEGIEALVVMFKEDMENFEQETNIMAYASANPS 264 (269)
Q Consensus 188 ~~~~vssw~~~~~y~~DFG~GkP~~v~~~~~~~~g~v~l~p~~~~~giev~v~L~~~~m~~l~~d~~~~~~~~~~~~ 264 (269)
+.+.+|||+|+++|++|||||||.++++...+.+|.++++|+++++|++|.|+|++++|++|++ ||++|+++||+
T Consensus 346 ~~~~vssw~~~~~y~~DFGwGkP~~v~~~~~~~~g~~~~~p~~~~~gi~v~v~L~~~~m~~f~~--e~~~~~~~~~~ 420 (421)
T 2bgh_A 346 ELLSFTSWCRLGFYDLDFGWGKPLSACTTTFPKRNAALLMDTRSGDGVEAWLPMAEDEMAMLPV--ELLSLVDSDFS 420 (421)
T ss_dssp GEEEEEEETTSCGGGCCSSSCCCSEEECCCCCSTTEEEEEECTTSSSEEEEEEEEHHHHHHSCH--HHHTTBCCCCC
T ss_pred CeEEEeccccCCCcccccCCCccCeecccccCcCCEEEEEecCCCCeEEEEEEcCHHHHHHHHH--HHHHhhcCCCC
Confidence 4689999999999999999999999998876678999999999888999999999999999988 99999999997
|
| >4g22_A Hydroxycinnamoyl-COA shikimate/quinate hydroxycinnamoyltransferase; BAHD superfamily; 1.70A {Coffea canephora} PDB: 4g2m_A 4g0b_A | Back alignment and structure |
|---|
| >2e1v_A Acyl transferase; BAHD superfamily, seleno-methionine derivative, dendranthema morifolium, DMAT; 1.80A {Chrysanthemum x morifolium} PDB: 2e1u_A 2e1t_A | Back alignment and structure |
|---|
| >2xr7_A Malonyltransferase; xenobiotics, naphthols; HET: MLC; 3.10A {Nicotiana tabacum} | Back alignment and structure |
|---|
| >2rkv_A Trichothecene 3-O-acetyltransferase; BAHD superfamily, deoxyniv T-2, acetyl COA, fusarium; HET: COA MPO ZBA; 1.60A {Gibberella zeae} PDB: 3b2s_A* 3b30_A* 2rkt_A* 2zba_A* | Back alignment and structure |
|---|
| >1q9j_A PAPA5, polyketide synthase associated protein 5; conjugating enzyme PAPA5, structural genomics, PSI protein structure initiative; 2.75A {Mycobacterium tuberculosis} SCOP: c.43.1.2 c.43.1.2 | Back alignment and structure |
|---|
| >1l5a_A Amide synthase, VIBH; nonribosomal peptide synthetase, NRPS condensation domain, vibriobactin, biosynthetic protein; 2.55A {Vibrio cholerae} SCOP: c.43.1.2 c.43.1.2 | Back alignment and structure |
|---|
| >4hvm_A Tlmii; PSI-biology, midwest center for structural genomics, MCSG, N product biosynthesis, natPro; 2.70A {Streptoalloteichus hindustanus} | Back alignment and structure |
|---|
| >2jgp_A Tyrocidine synthetase 3; multifunctional enzyme, antibiotic biosynthesis, condensatio domain, peptide bond formation, ligase; 1.85A {Brevibacillus brevis} | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 269 | |||
| d1l5aa1 | 174 | VibH {Vibrio cholerae [TaxId: 666]} | 91.58 | |
| d1q9ja2 | 238 | Polyketide synthase associated protein 5, PapA5 {M | 90.0 | |
| d1q9ja1 | 175 | Polyketide synthase associated protein 5, PapA5 {M | 84.19 |
| >d1l5aa1 c.43.1.2 (A:1-174) VibH {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: CoA-dependent acyltransferases superfamily: CoA-dependent acyltransferases family: NRPS condensation domain (amide synthase) domain: VibH species: Vibrio cholerae [TaxId: 666]
Probab=91.58 E-value=0.031 Score=42.16 Aligned_cols=35 Identities=20% Similarity=0.039 Sum_probs=30.1
Q ss_pred ccceEEEEEeeecCCeeEEEecccccccccCCCCC
Q 045800 21 ERELLAVQVNLFNSGEMAIGVCFSHGVADVPTAVS 55 (269)
Q Consensus 21 ~~Pll~vQvt~f~cGG~~lg~~~~H~v~Dg~~~~~ 55 (269)
..|++.+.+-+...|...+.+++||.++||.|+..
T Consensus 102 ~~pl~r~~l~~~~~~~~~l~~~~hHii~Dg~S~~~ 136 (174)
T d1l5aa1 102 DAPITSHQVYRLSHSEHLIYTRAHHIVLDGYGMML 136 (174)
T ss_dssp TSCSCEEEEEEEETTEEEEEEEEETTTCCHHHHHH
T ss_pred CCCcEEEEEEEeCCCceEEeeecccEEEcHhHHHH
Confidence 45888888877888999999999999999998754
|
| >d1q9ja2 c.43.1.2 (A:181-418) Polyketide synthase associated protein 5, PapA5 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
| >d1q9ja1 c.43.1.2 (A:1-175) Polyketide synthase associated protein 5, PapA5 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|